BSY240_1001 SM00649 Ribosomal protein L11/L12 BSY240_1002 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BSY240_1002 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BSY240_1011 SM00967 RNA 2'-O ribose methyltransferase substrate binding BSY240_1019 SM00937 BSY240_1019 BSY240_1021 SM00646 BSY240_1021 BSY240_1028 SM00878 Biotin carboxylase C-terminal domain BSY240_1030 SM00155 Phospholipase D. Active site motifs. BSY240_1038 SM00911 HWE histidine kinase BSY240_1045 SM00845 GatB domain BSY240_105 SM00327 von Willebrand factor (vWF) type A domain BSY240_1054 SM00849 Metallo-beta-lactamase superfamily BSY240_1057 SM00732 Likely ribonuclease with RNase H fold. BSY240_106 SM00729 Elongator protein 3, MiaB family, Radical SAM BSY240_1062 SM01207 BSY240_1062 BSY240_1065 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BSY240_1065 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BSY240_1065 SM00493 BSY240_1065 BSY240_1066 SM00316 Ribosomal protein S1-like RNA-binding domain BSY240_1066 SM00955 BSY240_1066 BSY240_1070 SM00267 diguanylate cyclase BSY240_1070 SM00448 cheY-homologous receiver domain BSY240_1071 SM00448 cheY-homologous receiver domain BSY240_1077 SM00481 DNA polymerase alpha chain like domain BSY240_1078 SM00382 ATPases associated with a variety of cellular activities BSY240_1083 SM00849 Metallo-beta-lactamase superfamily BSY240_1092 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BSY240_1094 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BSY240_1106 SM01130 BSY240_1106 BSY240_1107 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_1107 SM00895 BSY240_1107 BSY240_1108 SM00984 UDP binding domain BSY240_1114 SM00411 bacterial (prokaryotic) histone like domain BSY240_1115 SM00382 ATPases associated with a variety of cellular activities BSY240_1115 SM00464 Found in ATP-dependent protease La (LON) BSY240_1116 SM00382 ATPases associated with a variety of cellular activities BSY240_1116 SM00994 ClpX C4-type zinc finger BSY240_1116 SM01086 C-terminal, D2-small domain, of ClpB protein BSY240_1118 SM00267 diguanylate cyclase BSY240_112 SM00100 Cyclic nucleotide-monophosphate binding domain BSY240_112 SM00419 helix_turn_helix, cAMP Regulatory protein BSY240_1125 SM00881 CoA binding domain BSY240_1127 SM00881 CoA binding domain BSY240_1132 SM00859 Semialdehyde dehydrogenase, NAD binding domain BSY240_1147 SM00422 helix_turn_helix, mercury resistance BSY240_1148 SM00411 bacterial (prokaryotic) histone like domain BSY240_116 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BSY240_1164 SM00347 helix_turn_helix multiple antibiotic resistance protein BSY240_1166 SM01004 Delta-aminolevulinic acid dehydratase BSY240_1170 SM00052 Putative diguanylate phosphodiesterase BSY240_1170 SM00267 diguanylate cyclase BSY240_1171 SM00100 Cyclic nucleotide-monophosphate binding domain BSY240_1172 SM00434 DNA Topoisomerase IV BSY240_118 SM00100 Cyclic nucleotide-monophosphate binding domain BSY240_118 SM00419 helix_turn_helix, cAMP Regulatory protein BSY240_1184 SM00849 Metallo-beta-lactamase superfamily BSY240_1185 SM00474 3'-5' exonuclease BSY240_119 SM00421 helix_turn_helix, Lux Regulon BSY240_119 SM00448 cheY-homologous receiver domain BSY240_1199 SM00382 ATPases associated with a variety of cellular activities BSY240_120 SM00091 PAS domain BSY240_120 SM00387 Histidine kinase-like ATPases BSY240_120 SM00388 His Kinase A (phosphoacceptor) domain BSY240_1200 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BSY240_1206 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BSY240_1206 SM00465 GIY-YIG type nucleases (URI domain) BSY240_1210 SM00562 BSY240_1210 BSY240_1213 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_1215 SM00267 diguanylate cyclase BSY240_1216 SM00382 ATPases associated with a variety of cellular activities BSY240_1217 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_1217 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_1225 SM00650 Ribosomal RNA adenine dimethylases BSY240_1226 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_1226 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_1230 SM00072 Guanylate kinase homologues. BSY240_1233 SM00825 Beta-ketoacyl synthase BSY240_1234 SM00823 Phosphopantetheine attachment site BSY240_1235 SM00822 BSY240_1235 BSY240_1236 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BSY240_1243 SM00382 ATPases associated with a variety of cellular activities BSY240_1246 SM00342 helix_turn_helix, arabinose operon control protein BSY240_1247 SM01005 Alanine racemase, C-terminal domain BSY240_1250 SM00382 ATPases associated with a variety of cellular activities BSY240_1254 SM00267 diguanylate cyclase BSY240_1258 SM00966 SpoVT / AbrB like domain BSY240_1264 SM00917 LeuA allosteric (dimerisation) domain BSY240_1267 SM00257 Lysin motif BSY240_1268 SM00382 ATPases associated with a variety of cellular activities BSY240_1269 SM00091 PAS domain BSY240_1269 SM00267 diguanylate cyclase BSY240_1288 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSY240_1296 SM00358 Double-stranded RNA binding motif BSY240_1296 SM00535 Ribonuclease III family BSY240_13 SM00382 ATPases associated with a variety of cellular activities BSY240_1301 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSY240_1301 SM00954 Region found in RelA / SpoT proteins BSY240_1302 SM01409 BSY240_1302 BSY240_1304 SM00342 helix_turn_helix, arabinose operon control protein BSY240_1312 SM01130 BSY240_1312 BSY240_132 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_132 SM00895 BSY240_132 BSY240_133 SM00382 ATPases associated with a variety of cellular activities BSY240_1333 SM00822 BSY240_1333 BSY240_1335 SM01230 BSY240_1335 BSY240_1339 SM00382 ATPases associated with a variety of cellular activities BSY240_134 SM00382 ATPases associated with a variety of cellular activities BSY240_1343 SM00829 Enoylreductase BSY240_1344 SM00344 helix_turn_helix ASNC type BSY240_1356 SM00986 Uracil DNA glycosylase superfamily BSY240_1356 SM00987 UreE urease accessory protein, C-terminal domain BSY240_1364 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BSY240_1364 SM00387 Histidine kinase-like ATPases BSY240_1364 SM00388 His Kinase A (phosphoacceptor) domain BSY240_1366 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_1366 SM00387 Histidine kinase-like ATPases BSY240_1366 SM00388 His Kinase A (phosphoacceptor) domain BSY240_1367 SM00448 cheY-homologous receiver domain BSY240_1367 SM00862 Transcriptional regulatory protein, C terminal BSY240_1368 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSY240_1374 SM00028 Tetratricopeptide repeats BSY240_1376 SM00387 Histidine kinase-like ATPases BSY240_1376 SM00388 His Kinase A (phosphoacceptor) domain BSY240_1377 SM00448 cheY-homologous receiver domain BSY240_1377 SM00862 Transcriptional regulatory protein, C terminal BSY240_14 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_14 SM00895 BSY240_14 BSY240_1406 SM00886 Stress responsive A/B Barrel Domain BSY240_1412 SM00267 diguanylate cyclase BSY240_1415 SM00422 helix_turn_helix, mercury resistance BSY240_1421 SM00267 diguanylate cyclase BSY240_1422 SM00267 diguanylate cyclase BSY240_1433 SM00530 Helix-turn-helix XRE-family like proteins BSY240_1436 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSY240_1442 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_1445 SM00387 Histidine kinase-like ATPases BSY240_1445 SM00388 His Kinase A (phosphoacceptor) domain BSY240_1449 SM00760 Bacterial dnaA protein helix-turn-helix domain BSY240_1462 SM00341 Helicase and RNase D C-terminal BSY240_1462 SM00487 DEAD-like helicases superfamily BSY240_1462 SM00490 helicase superfamily c-terminal domain BSY240_1462 SM00956 BSY240_1462 BSY240_1465 SM00342 helix_turn_helix, arabinose operon control protein BSY240_1467 SM00829 Enoylreductase BSY240_1473 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_1473 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_1477 SM00382 ATPases associated with a variety of cellular activities BSY240_148 SM01018 B12 binding domain BSY240_1490 SM00387 Histidine kinase-like ATPases BSY240_1490 SM00911 HWE histidine kinase BSY240_1491 SM00822 BSY240_1491 BSY240_1493 SM00354 helix_turn _helix lactose operon repressor BSY240_1497 SM00052 Putative diguanylate phosphodiesterase BSY240_1504 SM00357 Cold shock protein domain BSY240_1510 SM00347 helix_turn_helix multiple antibiotic resistance protein BSY240_1513 SM00347 helix_turn_helix multiple antibiotic resistance protein BSY240_1521 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_1521 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_1521 SM01358 BSY240_1521 BSY240_1523 SM00347 helix_turn_helix multiple antibiotic resistance protein BSY240_1525 SM00710 Parallel beta-helix repeats BSY240_1526 SM00052 Putative diguanylate phosphodiesterase BSY240_1526 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BSY240_1526 SM00267 diguanylate cyclase BSY240_153 SM00829 Enoylreductase BSY240_1537 SM00267 diguanylate cyclase BSY240_1538 SM00829 Enoylreductase BSY240_154 SM00382 ATPases associated with a variety of cellular activities BSY240_1540 SM00052 Putative diguanylate phosphodiesterase BSY240_1540 SM00267 diguanylate cyclase BSY240_1562 SM00422 helix_turn_helix, mercury resistance BSY240_1564 SM00091 PAS domain BSY240_1564 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_1565 SM00354 helix_turn _helix lactose operon repressor BSY240_1573 SM00965 Secretin and TonB N terminus short domain BSY240_1577 SM00382 ATPases associated with a variety of cellular activities BSY240_1582 SM00342 helix_turn_helix, arabinose operon control protein BSY240_1583 SM00382 ATPases associated with a variety of cellular activities BSY240_1590 SM00849 Metallo-beta-lactamase superfamily BSY240_1602 SM00968 SMC proteins Flexible Hinge Domain BSY240_1608 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain BSY240_1608 SM01080 BSY240_1608 BSY240_1609 SM00100 Cyclic nucleotide-monophosphate binding domain BSY240_1610 SM00100 Cyclic nucleotide-monophosphate binding domain BSY240_1612 SM00478 endonuclease III BSY240_1620 SM01240 BSY240_1620 BSY240_1624 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_1624 SM00895 BSY240_1624 BSY240_1629 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSY240_163 SM01230 BSY240_163 BSY240_1633 SM00046 Diacylglycerol kinase catalytic domain (presumed) BSY240_1635 SM00530 Helix-turn-helix XRE-family like proteins BSY240_1640 SM00052 Putative diguanylate phosphodiesterase BSY240_1640 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BSY240_1640 SM00267 diguanylate cyclase BSY240_1642 SM00342 helix_turn_helix, arabinose operon control protein BSY240_1642 SM00871 Bacterial transcription activator, effector binding domain BSY240_1647 SM00886 Stress responsive A/B Barrel Domain BSY240_1651 SM00052 Putative diguanylate phosphodiesterase BSY240_1651 SM00091 PAS domain BSY240_1651 SM00267 diguanylate cyclase BSY240_1667 SM00422 helix_turn_helix, mercury resistance BSY240_1672 SM00271 DnaJ molecular chaperone homology domain BSY240_1674 SM00855 Phosphoglycerate mutase family BSY240_1676 SM00052 Putative diguanylate phosphodiesterase BSY240_1676 SM00091 PAS domain BSY240_1676 SM00267 diguanylate cyclase BSY240_1679 SM00953 BSY240_1679 BSY240_168 SM00347 helix_turn_helix multiple antibiotic resistance protein BSY240_1683 SM00382 ATPases associated with a variety of cellular activities BSY240_1687 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_1687 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_1694 SM00861 Transketolase, pyrimidine binding domain BSY240_1697 SM00448 cheY-homologous receiver domain BSY240_1701 SM00344 helix_turn_helix ASNC type BSY240_1702 SM00382 ATPases associated with a variety of cellular activities BSY240_1703 SM00062 Bacterial periplasmic substrate-binding proteins BSY240_1712 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BSY240_1712 SM00091 PAS domain BSY240_1712 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_1713 SM00363 S4 RNA-binding domain BSY240_1717 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_1717 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_1729 SM00267 diguanylate cyclase BSY240_173 SM00342 helix_turn_helix, arabinose operon control protein BSY240_1733 SM00382 ATPases associated with a variety of cellular activities BSY240_1744 SM00422 helix_turn_helix, mercury resistance BSY240_1757 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BSY240_1757 SM00316 Ribosomal protein S1-like RNA-binding domain BSY240_1757 SM00732 Likely ribonuclease with RNase H fold. BSY240_1758 SM01209 BSY240_1758 BSY240_1758 SM01210 BSY240_1758 BSY240_1760 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_1760 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_1760 SM01049 BSY240_1760 BSY240_1768 SM00387 Histidine kinase-like ATPases BSY240_1768 SM00388 His Kinase A (phosphoacceptor) domain BSY240_1769 SM00448 cheY-homologous receiver domain BSY240_177 SM00382 ATPases associated with a variety of cellular activities BSY240_1771 SM00911 HWE histidine kinase BSY240_1777 SM00028 Tetratricopeptide repeats BSY240_1779 SM00852 Probable molybdopterin binding domain BSY240_178 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_178 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_1781 SM00729 Elongator protein 3, MiaB family, Radical SAM BSY240_179 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSY240_1793 SM00421 helix_turn_helix, Lux Regulon BSY240_1799 SM00052 Putative diguanylate phosphodiesterase BSY240_1799 SM00267 diguanylate cyclase BSY240_1800 SM00448 cheY-homologous receiver domain BSY240_1801 SM00853 MutL C terminal dimerisation domain BSY240_1801 SM01340 BSY240_1801 BSY240_1812 SM00363 S4 RNA-binding domain BSY240_182 SM00641 Glycosyl hydrolases family 25 BSY240_1823 SM00904 Riboflavin kinase BSY240_1826 SM00883 Chaperonin 10 Kd subunit BSY240_185 SM00052 Putative diguanylate phosphodiesterase BSY240_185 SM00267 diguanylate cyclase BSY240_1852 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_1852 SM00895 BSY240_1852 BSY240_1863 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_1863 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_1869 SM00829 Enoylreductase BSY240_1873 SM00116 Domain in cystathionine beta-synthase and other proteins. BSY240_1873 SM01240 BSY240_1873 BSY240_1875 SM00849 Metallo-beta-lactamase superfamily BSY240_1883 SM00849 Metallo-beta-lactamase superfamily BSY240_190 SM00271 DnaJ molecular chaperone homology domain BSY240_1901 SM00448 cheY-homologous receiver domain BSY240_1901 SM00862 Transcriptional regulatory protein, C terminal BSY240_1902 SM00387 Histidine kinase-like ATPases BSY240_1902 SM00388 His Kinase A (phosphoacceptor) domain BSY240_1903 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_1903 SM00866 BSY240_1903 BSY240_1906 SM00382 ATPases associated with a variety of cellular activities BSY240_1908 SM00387 Histidine kinase-like ATPases BSY240_1908 SM00388 His Kinase A (phosphoacceptor) domain BSY240_1909 SM00448 cheY-homologous receiver domain BSY240_1909 SM00862 Transcriptional regulatory protein, C terminal BSY240_191 SM00644 BSY240_191 BSY240_1919 SM00422 helix_turn_helix, mercury resistance BSY240_1924 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_1924 SM00387 Histidine kinase-like ATPases BSY240_1924 SM00388 His Kinase A (phosphoacceptor) domain BSY240_1925 SM00448 cheY-homologous receiver domain BSY240_1925 SM00862 Transcriptional regulatory protein, C terminal BSY240_1927 SM00116 Domain in cystathionine beta-synthase and other proteins. BSY240_1928 SM00155 Phospholipase D. Active site motifs. BSY240_1932 SM00382 ATPases associated with a variety of cellular activities BSY240_1936 SM00448 cheY-homologous receiver domain BSY240_1936 SM00862 Transcriptional regulatory protein, C terminal BSY240_1937 SM00387 Histidine kinase-like ATPases BSY240_1939 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BSY240_1942 SM00382 ATPases associated with a variety of cellular activities BSY240_1946 SM00448 cheY-homologous receiver domain BSY240_1946 SM01012 BSY240_1946 BSY240_1947 SM00382 ATPases associated with a variety of cellular activities BSY240_1955 SM00448 cheY-homologous receiver domain BSY240_1957 SM00138 Methyltransferase, chemotaxis proteins BSY240_1957 SM00387 Histidine kinase-like ATPases BSY240_1957 SM00388 His Kinase A (phosphoacceptor) domain BSY240_1957 SM00421 helix_turn_helix, Lux Regulon BSY240_1957 SM00448 cheY-homologous receiver domain BSY240_1967 SM01133 BSY240_1967 BSY240_1972 SM00382 ATPases associated with a variety of cellular activities BSY240_1976 SM00460 Transglutaminase/protease-like homologues BSY240_1982 SM00357 Cold shock protein domain BSY240_1984 SM01034 Sensors of blue-light using FAD BSY240_1985 SM00448 cheY-homologous receiver domain BSY240_2 SM00062 Bacterial periplasmic substrate-binding proteins BSY240_2004 SM00387 Histidine kinase-like ATPases BSY240_2004 SM00388 His Kinase A (phosphoacceptor) domain BSY240_2005 SM00382 ATPases associated with a variety of cellular activities BSY240_2005 SM00448 cheY-homologous receiver domain BSY240_2007 SM00965 Secretin and TonB N terminus short domain BSY240_2024 SM00382 ATPases associated with a variety of cellular activities BSY240_2027 SM00382 ATPases associated with a variety of cellular activities BSY240_2031 SM00354 helix_turn _helix lactose operon repressor BSY240_2036 SM00342 helix_turn_helix, arabinose operon control protein BSY240_2041 SM00382 ATPases associated with a variety of cellular activities BSY240_2046 SM00052 Putative diguanylate phosphodiesterase BSY240_2046 SM00267 diguanylate cyclase BSY240_2046 SM01080 BSY240_2046 BSY240_2048 SM01230 BSY240_2048 BSY240_206 SM00267 diguanylate cyclase BSY240_2066 SM00091 PAS domain BSY240_2066 SM00387 Histidine kinase-like ATPases BSY240_2066 SM00388 His Kinase A (phosphoacceptor) domain BSY240_2074 SM00382 ATPases associated with a variety of cellular activities BSY240_2076 SM00530 Helix-turn-helix XRE-family like proteins BSY240_2081 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_2081 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_2084 SM01230 BSY240_2084 BSY240_2089 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BSY240_2089 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_209 SM00842 Cell division protein FtsA BSY240_2096 SM00382 ATPases associated with a variety of cellular activities BSY240_2097 SM00642 Alpha-amylase domain BSY240_210 SM00864 Tubulin/FtsZ family, GTPase domain BSY240_210 SM00865 Tubulin/FtsZ family, C-terminal domain BSY240_2101 SM00354 helix_turn _helix lactose operon repressor BSY240_2117 SM00862 Transcriptional regulatory protein, C terminal BSY240_2132 SM00858 BSY240_2132 BSY240_2138 SM00382 ATPases associated with a variety of cellular activities BSY240_214 SM00155 Phospholipase D. Active site motifs. BSY240_2146 SM00421 helix_turn_helix, Lux Regulon BSY240_2147 SM00421 helix_turn_helix, Lux Regulon BSY240_2151 SM00448 cheY-homologous receiver domain BSY240_2152 SM00448 cheY-homologous receiver domain BSY240_2153 SM00138 Methyltransferase, chemotaxis proteins BSY240_2154 SM00260 Two component signalling adaptor domain BSY240_2155 SM00073 Histidine Phosphotransfer domain BSY240_2155 SM00260 Two component signalling adaptor domain BSY240_2155 SM00387 Histidine kinase-like ATPases BSY240_2155 SM01231 BSY240_2155 BSY240_2156 SM00448 cheY-homologous receiver domain BSY240_2158 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_2159 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BSY240_216 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BSY240_216 SM00292 breast cancer carboxy-terminal domain BSY240_216 SM00532 Ligase N family BSY240_2161 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BSY240_2169 SM00911 HWE histidine kinase BSY240_217 SM00267 diguanylate cyclase BSY240_2173 SM00641 Glycosyl hydrolases family 25 BSY240_2176 SM00822 BSY240_2176 BSY240_2177 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_2177 SM00895 BSY240_2177 BSY240_2181 SM00796 Allophanate hydrolase subunit 1 BSY240_2181 SM00797 Allophanate hydrolase subunit 2 BSY240_2182 SM00878 Biotin carboxylase C-terminal domain BSY240_2186 SM00347 helix_turn_helix multiple antibiotic resistance protein BSY240_2190 SM00342 helix_turn_helix, arabinose operon control protein BSY240_22 SM00382 ATPases associated with a variety of cellular activities BSY240_220 SM00487 DEAD-like helicases superfamily BSY240_220 SM00490 helicase superfamily c-terminal domain BSY240_2205 SM00382 ATPases associated with a variety of cellular activities BSY240_2207 SM00327 von Willebrand factor (vWF) type A domain BSY240_2209 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_2209 SM00895 BSY240_2209 BSY240_2210 SM01130 BSY240_2210 BSY240_2211 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BSY240_2217 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BSY240_2217 SM00267 diguanylate cyclase BSY240_2219 SM00421 helix_turn_helix, Lux Regulon BSY240_2219 SM00448 cheY-homologous receiver domain BSY240_222 SM00479 BSY240_222 BSY240_2220 SM00387 Histidine kinase-like ATPases BSY240_2222 SM00382 ATPases associated with a variety of cellular activities BSY240_2229 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BSY240_2229 SM00091 PAS domain BSY240_2233 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_2233 SM00895 BSY240_2233 BSY240_2237 SM00382 ATPases associated with a variety of cellular activities BSY240_2240 SM00344 helix_turn_helix ASNC type BSY240_2241 SM00382 ATPases associated with a variety of cellular activities BSY240_2242 SM00382 ATPases associated with a variety of cellular activities BSY240_225 SM00260 Two component signalling adaptor domain BSY240_2257 SM01007 Class II Aldolase and Adducin N-terminal domain BSY240_226 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_226 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_2260 SM00382 ATPases associated with a variety of cellular activities BSY240_2264 SM00861 Transketolase, pyrimidine binding domain BSY240_2271 SM00318 Staphylococcal nuclease homologues BSY240_2280 SM00487 DEAD-like helicases superfamily BSY240_2280 SM00490 helicase superfamily c-terminal domain BSY240_2290 SM00226 Low molecular weight phosphatase family BSY240_2301 SM00382 ATPases associated with a variety of cellular activities BSY240_2306 SM00387 Histidine kinase-like ATPases BSY240_2306 SM00388 His Kinase A (phosphoacceptor) domain BSY240_2306 SM00448 cheY-homologous receiver domain BSY240_2308 SM00640 Glycosyl hydrolases family 32 BSY240_2314 SM00671 Sel1-like repeats. BSY240_2318 SM00487 DEAD-like helicases superfamily BSY240_2318 SM00490 helicase superfamily c-terminal domain BSY240_2320 SM00028 Tetratricopeptide repeats BSY240_2327 SM00421 helix_turn_helix, Lux Regulon BSY240_2327 SM00448 cheY-homologous receiver domain BSY240_2331 SM00062 Bacterial periplasmic substrate-binding proteins BSY240_2343 SM00448 cheY-homologous receiver domain BSY240_2343 SM00862 Transcriptional regulatory protein, C terminal BSY240_2345 SM00382 ATPases associated with a variety of cellular activities BSY240_2349 SM00387 Histidine kinase-like ATPases BSY240_2349 SM00388 His Kinase A (phosphoacceptor) domain BSY240_2363 SM00448 cheY-homologous receiver domain BSY240_2363 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSY240_2364 SM00073 Histidine Phosphotransfer domain BSY240_2364 SM00387 Histidine kinase-like ATPases BSY240_2364 SM00388 His Kinase A (phosphoacceptor) domain BSY240_2364 SM00448 cheY-homologous receiver domain BSY240_2366 SM00448 cheY-homologous receiver domain BSY240_2368 SM00382 ATPases associated with a variety of cellular activities BSY240_2373 SM00100 Cyclic nucleotide-monophosphate binding domain BSY240_2373 SM00419 helix_turn_helix, cAMP Regulatory protein BSY240_2376 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_2376 SM00387 Histidine kinase-like ATPases BSY240_238 SM00564 beta-propeller repeat BSY240_2381 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. BSY240_2397 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_2398 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_24 SM00420 helix_turn_helix, Deoxyribose operon repressor BSY240_24 SM01134 BSY240_24 BSY240_2401 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_2401 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_2407 SM00530 Helix-turn-helix XRE-family like proteins BSY240_2409 SM01091 Transporter associated domain BSY240_2412 SM00729 Elongator protein 3, MiaB family, Radical SAM BSY240_2413 SM00563 Phosphate acyltransferases BSY240_2417 SM00932 Scaffold protein Nfu/NifU N terminal BSY240_2423 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSY240_2424 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BSY240_2424 SM00534 ATPase domain of DNA mismatch repair MUTS family BSY240_2426 SM00919 Malic enzyme, NAD binding domain BSY240_2426 SM01274 BSY240_2426 BSY240_2429 SM00967 RNA 2'-O ribose methyltransferase substrate binding BSY240_2432 SM00411 bacterial (prokaryotic) histone like domain BSY240_2435 SM00382 ATPases associated with a variety of cellular activities BSY240_2444 SM00729 Elongator protein 3, MiaB family, Radical SAM BSY240_2446 SM00382 ATPases associated with a variety of cellular activities BSY240_2446 SM00760 Bacterial dnaA protein helix-turn-helix domain BSY240_2449 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BSY240_2449 SM01232 BSY240_2449 BSY240_2452 SM00387 Histidine kinase-like ATPases BSY240_2452 SM00388 His Kinase A (phosphoacceptor) domain BSY240_2453 SM00448 cheY-homologous receiver domain BSY240_2454 SM00387 Histidine kinase-like ATPases BSY240_2454 SM00448 cheY-homologous receiver domain BSY240_2464 SM00344 helix_turn_helix ASNC type BSY240_2470 SM00911 HWE histidine kinase BSY240_2471 SM00382 ATPases associated with a variety of cellular activities BSY240_2473 SM00382 ATPases associated with a variety of cellular activities BSY240_2479 SM00480 DNA polymerase III beta subunit BSY240_2481 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BSY240_25 SM01120 BSY240_25 BSY240_2500 SM00822 BSY240_2500 BSY240_2509 SM00357 Cold shock protein domain BSY240_2519 SM00342 helix_turn_helix, arabinose operon control protein BSY240_252 SM00244 prohibitin homologues BSY240_2523 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_2526 SM00342 helix_turn_helix, arabinose operon control protein BSY240_253 SM00244 prohibitin homologues BSY240_2530 SM00873 B3/4 domain BSY240_2530 SM00874 tRNA synthetase B5 domain BSY240_2530 SM00896 Ferredoxin-fold anticodon binding domain BSY240_2537 SM00387 Histidine kinase-like ATPases BSY240_2538 SM00448 cheY-homologous receiver domain BSY240_2538 SM00862 Transcriptional regulatory protein, C terminal BSY240_255 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSY240_2554 SM00530 Helix-turn-helix XRE-family like proteins BSY240_2555 SM00530 Helix-turn-helix XRE-family like proteins BSY240_2557 SM00829 Enoylreductase BSY240_256 SM00052 Putative diguanylate phosphodiesterase BSY240_256 SM00267 diguanylate cyclase BSY240_2564 SM00838 Elongation factor G C-terminus BSY240_2583 SM00347 helix_turn_helix multiple antibiotic resistance protein BSY240_2585 SM00028 Tetratricopeptide repeats BSY240_2588 SM00843 BSY240_2588 BSY240_2595 SM00419 helix_turn_helix, cAMP Regulatory protein BSY240_2597 SM00342 helix_turn_helix, arabinose operon control protein BSY240_2599 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_2599 SM00895 BSY240_2599 BSY240_26 SM00382 ATPases associated with a variety of cellular activities BSY240_2600 SM00062 Bacterial periplasmic substrate-binding proteins BSY240_2600 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BSY240_2602 SM00382 ATPases associated with a variety of cellular activities BSY240_2605 SM01130 BSY240_2605 BSY240_2609 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_2618 SM00382 ATPases associated with a variety of cellular activities BSY240_2623 SM01133 BSY240_2623 BSY240_2624 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BSY240_263 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSY240_2646 SM00382 ATPases associated with a variety of cellular activities BSY240_2653 SM00851 MGS-like domain BSY240_2655 SM00382 ATPases associated with a variety of cellular activities BSY240_2657 SM00855 Phosphoglycerate mutase family BSY240_2659 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BSY240_2659 SM00474 3'-5' exonuclease BSY240_2659 SM00475 5'-3' exonuclease BSY240_2659 SM00479 BSY240_2659 BSY240_2659 SM00482 DNA polymerase A domain BSY240_2660 SM00347 helix_turn_helix multiple antibiotic resistance protein BSY240_2666 SM00271 DnaJ molecular chaperone homology domain BSY240_2671 SM00382 ATPases associated with a variety of cellular activities BSY240_2676 SM00287 Bacterial SH3 domain homologues BSY240_2683 SM00382 ATPases associated with a variety of cellular activities BSY240_2687 SM00493 BSY240_2687 BSY240_2691 SM00316 Ribosomal protein S1-like RNA-binding domain BSY240_2691 SM00322 K homology RNA-binding domain BSY240_2696 SM01387 BSY240_2696 BSY240_2697 SM00316 Ribosomal protein S1-like RNA-binding domain BSY240_2697 SM00322 K homology RNA-binding domain BSY240_2699 SM00342 helix_turn_helix, arabinose operon control protein BSY240_27 SM00382 ATPases associated with a variety of cellular activities BSY240_2700 SM00421 helix_turn_helix, Lux Regulon BSY240_2701 SM00825 Beta-ketoacyl synthase BSY240_271 SM00421 helix_turn_helix, Lux Regulon BSY240_271 SM00422 helix_turn_helix, mercury resistance BSY240_2712 SM00316 Ribosomal protein S1-like RNA-binding domain BSY240_2717 SM00474 3'-5' exonuclease BSY240_2733 SM00382 ATPases associated with a variety of cellular activities BSY240_2736 SM00420 helix_turn_helix, Deoxyribose operon repressor BSY240_2736 SM01134 BSY240_2736 BSY240_2739 SM00382 ATPases associated with a variety of cellular activities BSY240_2750 SM00382 ATPases associated with a variety of cellular activities BSY240_2751 SM00822 BSY240_2751 BSY240_276 SM00344 helix_turn_helix ASNC type BSY240_2762 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_2762 SM00866 BSY240_2762 BSY240_2778 SM00382 ATPases associated with a variety of cellular activities BSY240_2779 SM00849 Metallo-beta-lactamase superfamily BSY240_2781 SM01130 BSY240_2781 BSY240_2782 SM00382 ATPases associated with a variety of cellular activities BSY240_2790 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_2790 SM00895 BSY240_2790 BSY240_2792 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_2792 SM00895 BSY240_2792 BSY240_2796 SM00829 Enoylreductase BSY240_2799 SM01007 Class II Aldolase and Adducin N-terminal domain BSY240_2801 SM00354 helix_turn _helix lactose operon repressor BSY240_2803 SM00382 ATPases associated with a variety of cellular activities BSY240_2816 SM00487 DEAD-like helicases superfamily BSY240_2816 SM00490 helicase superfamily c-terminal domain BSY240_2816 SM00847 Helicase associated domain (HA2) Add an annotation BSY240_2817 SM00387 Histidine kinase-like ATPases BSY240_2817 SM00388 His Kinase A (phosphoacceptor) domain BSY240_2818 SM00448 cheY-homologous receiver domain BSY240_2825 SM00382 ATPases associated with a variety of cellular activities BSY240_2825 SM01086 C-terminal, D2-small domain, of ClpB protein BSY240_2836 SM00448 cheY-homologous receiver domain BSY240_2836 SM00862 Transcriptional regulatory protein, C terminal BSY240_2837 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_2837 SM00387 Histidine kinase-like ATPases BSY240_2837 SM00388 His Kinase A (phosphoacceptor) domain BSY240_284 SM00267 diguanylate cyclase BSY240_2841 SM00996 S-adenosyl-L-homocysteine hydrolase BSY240_2841 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BSY240_2842 SM00091 PAS domain BSY240_2842 SM00387 Histidine kinase-like ATPases BSY240_2842 SM00388 His Kinase A (phosphoacceptor) domain BSY240_2857 SM00387 Histidine kinase-like ATPases BSY240_2857 SM00433 TopoisomeraseII BSY240_2858 SM00530 Helix-turn-helix XRE-family like proteins BSY240_2859 SM00463 Small MutS-related domain BSY240_2860 SM00925 MltA specific insert domain BSY240_2861 SM00978 BSY240_2861 BSY240_2864 SM00479 BSY240_2864 BSY240_2871 SM00357 Cold shock protein domain BSY240_2871 SM00382 ATPases associated with a variety of cellular activities BSY240_2871 SM00959 Rho termination factor, N-terminal domain BSY240_2873 SM01228 BSY240_2873 BSY240_2877 SM00470 ParB-like nuclease domain BSY240_2884 SM00318 Staphylococcal nuclease homologues BSY240_2889 SM00798 AICARFT/IMPCHase bienzyme BSY240_2889 SM00851 MGS-like domain BSY240_2893 SM00947 Carbonic anhydrase BSY240_2895 SM00859 Semialdehyde dehydrogenase, NAD binding domain BSY240_290 SM00382 ATPases associated with a variety of cellular activities BSY240_2900 SM00382 ATPases associated with a variety of cellular activities BSY240_2910 SM00382 ATPases associated with a variety of cellular activities BSY240_2917 SM00382 ATPases associated with a variety of cellular activities BSY240_2917 SM00962 SRP54-type protein, GTPase domain BSY240_2917 SM00963 SRP54-type protein, helical bundle domain BSY240_2918 SM00729 Elongator protein 3, MiaB family, Radical SAM BSY240_2926 SM00382 ATPases associated with a variety of cellular activities BSY240_2926 SM00962 SRP54-type protein, GTPase domain BSY240_2926 SM00963 SRP54-type protein, helical bundle domain BSY240_2927 SM00830 Chorismate mutase type II BSY240_2936 SM00672 Putative lipopolysaccharide-modifying enzyme. BSY240_2938 SM00062 Bacterial periplasmic substrate-binding proteins BSY240_2938 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BSY240_2942 SM00448 cheY-homologous receiver domain BSY240_2942 SM00862 Transcriptional regulatory protein, C terminal BSY240_2943 SM00100 Cyclic nucleotide-monophosphate binding domain BSY240_2946 SM00382 ATPases associated with a variety of cellular activities BSY240_2946 SM00843 BSY240_2946 BSY240_2948 SM00938 Nitrogen regulatory protein P-II BSY240_2952 SM00464 Found in ATP-dependent protease La (LON) BSY240_2964 SM01329 BSY240_2964 BSY240_2967 SM00347 helix_turn_helix multiple antibiotic resistance protein BSY240_2969 SM00382 ATPases associated with a variety of cellular activities BSY240_297 SM00448 cheY-homologous receiver domain BSY240_2973 SM00382 ATPases associated with a variety of cellular activities BSY240_2974 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BSY240_2977 SM00382 ATPases associated with a variety of cellular activities BSY240_298 SM00267 diguanylate cyclase BSY240_298 SM00448 cheY-homologous receiver domain BSY240_2981 SM00481 DNA polymerase alpha chain like domain BSY240_2985 SM00822 BSY240_2985 BSY240_2986 SM00342 helix_turn_helix, arabinose operon control protein BSY240_2987 SM00450 Rhodanese Homology Domain BSY240_299 SM00382 ATPases associated with a variety of cellular activities BSY240_2990 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSY240_2990 SM00245 tail specific protease BSY240_2996 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BSY240_3 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_3 SM00895 BSY240_3 BSY240_3010 SM00382 ATPases associated with a variety of cellular activities BSY240_3012 SM00382 ATPases associated with a variety of cellular activities BSY240_3013 SM00382 ATPases associated with a variety of cellular activities BSY240_3018 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_3018 SM00866 BSY240_3018 BSY240_3020 SM00831 Cation transporter/ATPase, N-terminus BSY240_3021 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_3021 SM00895 BSY240_3021 BSY240_3026 SM00829 Enoylreductase BSY240_3028 SM00382 ATPases associated with a variety of cellular activities BSY240_3032 SM00858 BSY240_3032 BSY240_3033 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_3033 SM00895 BSY240_3033 BSY240_3035 SM00342 helix_turn_helix, arabinose operon control protein BSY240_3040 SM00382 ATPases associated with a variety of cellular activities BSY240_3046 SM00382 ATPases associated with a variety of cellular activities BSY240_3047 SM00421 helix_turn_helix, Lux Regulon BSY240_3048 SM00878 Biotin carboxylase C-terminal domain BSY240_3049 SM01068 Putative carbohydrate binding domain BSY240_305 SM00387 Histidine kinase-like ATPases BSY240_305 SM00388 His Kinase A (phosphoacceptor) domain BSY240_3065 SM00822 BSY240_3065 BSY240_3069 SM00490 helicase superfamily c-terminal domain BSY240_307 SM00318 Staphylococcal nuclease homologues BSY240_3070 SM00363 S4 RNA-binding domain BSY240_3072 SM01058 CarD-like/TRCF domain BSY240_3075 SM00382 ATPases associated with a variety of cellular activities BSY240_3077 SM00226 Low molecular weight phosphatase family BSY240_308 SM00986 Uracil DNA glycosylase superfamily BSY240_308 SM00987 UreE urease accessory protein, C-terminal domain BSY240_309 SM00344 helix_turn_helix ASNC type BSY240_3095 SM01152 BSY240_3095 BSY240_3118 SM00881 CoA binding domain BSY240_3119 SM00861 Transketolase, pyrimidine binding domain BSY240_3123 SM00822 BSY240_3123 BSY240_3129 SM00563 Phosphate acyltransferases BSY240_313 SM00028 Tetratricopeptide repeats BSY240_3130 SM00487 DEAD-like helicases superfamily BSY240_3130 SM00490 helicase superfamily c-terminal domain BSY240_3135 SM00382 ATPases associated with a variety of cellular activities BSY240_3138 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BSY240_3142 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSY240_3145 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BSY240_3146 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BSY240_3146 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BSY240_3149 SM00870 BSY240_3149 BSY240_3150 SM00260 Two component signalling adaptor domain BSY240_3151 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BSY240_3151 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_3153 SM00344 helix_turn_helix ASNC type BSY240_3158 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BSY240_3159 SM01092 CO dehydrogenase flavoprotein C-terminal domain BSY240_3161 SM00342 helix_turn_helix, arabinose operon control protein BSY240_3165 SM00749 bacterial OsmY and nodulation domain BSY240_3177 SM00833 Cobalamin synthesis protein cobW C-terminal domain BSY240_318 SM00062 Bacterial periplasmic substrate-binding proteins BSY240_318 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BSY240_3184 SM00116 Domain in cystathionine beta-synthase and other proteins. BSY240_3184 SM01091 Transporter associated domain BSY240_3186 SM00271 DnaJ molecular chaperone homology domain BSY240_3188 SM00327 von Willebrand factor (vWF) type A domain BSY240_3196 SM00849 Metallo-beta-lactamase superfamily BSY240_32 SM00354 helix_turn _helix lactose operon repressor BSY240_3202 SM00563 Phosphate acyltransferases BSY240_3205 SM00382 ATPases associated with a variety of cellular activities BSY240_3208 SM00448 cheY-homologous receiver domain BSY240_3214 SM00052 Putative diguanylate phosphodiesterase BSY240_3215 SM00382 ATPases associated with a variety of cellular activities BSY240_3220 SM00893 Electron transfer flavoprotein domain BSY240_3221 SM00893 Electron transfer flavoprotein domain BSY240_3228 SM00478 endonuclease III BSY240_3229 SM00507 HNH nucleases BSY240_3238 SM00957 SecA DEAD-like domain BSY240_3238 SM00958 SecA preprotein cross-linking domain BSY240_324 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_324 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_325 SM00729 Elongator protein 3, MiaB family, Radical SAM BSY240_3255 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BSY240_3256 SM00937 BSY240_3256 BSY240_3259 SM00382 ATPases associated with a variety of cellular activities BSY240_3259 SM01086 C-terminal, D2-small domain, of ClpB protein BSY240_326 SM00347 helix_turn_helix multiple antibiotic resistance protein BSY240_3269 SM00857 Resolvase, N terminal domain BSY240_3274 SM00344 helix_turn_helix ASNC type BSY240_3276 SM00062 Bacterial periplasmic substrate-binding proteins BSY240_3283 SM00382 ATPases associated with a variety of cellular activities BSY240_3284 SM00382 ATPases associated with a variety of cellular activities BSY240_3287 SM00346 helix_turn_helix isocitrate lyase regulation BSY240_3294 SM00382 ATPases associated with a variety of cellular activities BSY240_3296 SM01012 BSY240_3296 BSY240_330 SM00267 diguanylate cyclase BSY240_3301 SM00382 ATPases associated with a variety of cellular activities BSY240_3302 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BSY240_3302 SM00091 PAS domain BSY240_3302 SM00387 Histidine kinase-like ATPases BSY240_3302 SM00448 cheY-homologous receiver domain BSY240_3305 SM01060 BSY240_3305 BSY240_3306 SM00448 cheY-homologous receiver domain BSY240_3307 SM00387 Histidine kinase-like ATPases BSY240_3308 SM00911 HWE histidine kinase BSY240_3312 SM00052 Putative diguanylate phosphodiesterase BSY240_3312 SM00267 diguanylate cyclase BSY240_3313 SM00382 ATPases associated with a variety of cellular activities BSY240_3316 SM00382 ATPases associated with a variety of cellular activities BSY240_332 SM00267 diguanylate cyclase BSY240_3321 SM00382 ATPases associated with a variety of cellular activities BSY240_3324 SM00421 helix_turn_helix, Lux Regulon BSY240_3324 SM00448 cheY-homologous receiver domain BSY240_3325 SM00382 ATPases associated with a variety of cellular activities BSY240_3329 SM01092 CO dehydrogenase flavoprotein C-terminal domain BSY240_3330 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BSY240_3334 SM00382 ATPases associated with a variety of cellular activities BSY240_3335 SM00382 ATPases associated with a variety of cellular activities BSY240_3336 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_3336 SM00895 BSY240_3336 BSY240_3339 SM01133 BSY240_3339 BSY240_3343 SM00354 helix_turn _helix lactose operon repressor BSY240_3349 SM00354 helix_turn _helix lactose operon repressor BSY240_3354 SM00382 ATPases associated with a variety of cellular activities BSY240_3360 SM00382 ATPases associated with a variety of cellular activities BSY240_3367 SM00100 Cyclic nucleotide-monophosphate binding domain BSY240_3367 SM00116 Domain in cystathionine beta-synthase and other proteins. BSY240_3369 SM00479 BSY240_3369 BSY240_3374 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BSY240_3374 SM00091 PAS domain BSY240_3374 SM00911 HWE histidine kinase BSY240_3380 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_3380 SM00895 BSY240_3380 BSY240_3391 SM00382 ATPases associated with a variety of cellular activities BSY240_3393 SM00420 helix_turn_helix, Deoxyribose operon repressor BSY240_3393 SM01134 BSY240_3393 BSY240_3394 SM01007 Class II Aldolase and Adducin N-terminal domain BSY240_3409 SM01359 BSY240_3409 BSY240_3409 SM01360 BSY240_3409 BSY240_3413 SM00642 Alpha-amylase domain BSY240_3415 SM00822 BSY240_3415 BSY240_3446 SM00841 Elongation factor P, C-terminal BSY240_3446 SM01185 BSY240_3446 BSY240_3451 SM00422 helix_turn_helix, mercury resistance BSY240_3451 SM00530 Helix-turn-helix XRE-family like proteins BSY240_3470 SM00903 Flavin reductase like domain BSY240_3473 SM00903 Flavin reductase like domain BSY240_3475 SM00062 Bacterial periplasmic substrate-binding proteins BSY240_3476 SM00062 Bacterial periplasmic substrate-binding proteins BSY240_3479 SM00382 ATPases associated with a variety of cellular activities BSY240_3492 SM00382 ATPases associated with a variety of cellular activities BSY240_3494 SM00342 helix_turn_helix, arabinose operon control protein BSY240_3495 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BSY240_3500 SM00849 Metallo-beta-lactamase superfamily BSY240_3502 SM00387 Histidine kinase-like ATPases BSY240_3502 SM00388 His Kinase A (phosphoacceptor) domain BSY240_3503 SM00448 cheY-homologous receiver domain BSY240_3503 SM00862 Transcriptional regulatory protein, C terminal BSY240_3509 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSY240_351 SM00421 helix_turn_helix, Lux Regulon BSY240_352 SM00919 Malic enzyme, NAD binding domain BSY240_352 SM01274 BSY240_352 BSY240_3523 SM00849 Metallo-beta-lactamase superfamily BSY240_3524 SM00387 Histidine kinase-like ATPases BSY240_3524 SM00388 His Kinase A (phosphoacceptor) domain BSY240_3525 SM00448 cheY-homologous receiver domain BSY240_3525 SM00862 Transcriptional regulatory protein, C terminal BSY240_3529 SM01130 BSY240_3529 BSY240_3532 SM00382 ATPases associated with a variety of cellular activities BSY240_3533 SM00382 ATPases associated with a variety of cellular activities BSY240_3540 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_3540 SM00895 BSY240_3540 BSY240_3541 SM00729 Elongator protein 3, MiaB family, Radical SAM BSY240_3545 SM00382 ATPases associated with a variety of cellular activities BSY240_3546 SM00382 ATPases associated with a variety of cellular activities BSY240_3547 SM00100 Cyclic nucleotide-monophosphate binding domain BSY240_3548 SM00382 ATPases associated with a variety of cellular activities BSY240_3549 SM00382 ATPases associated with a variety of cellular activities BSY240_355 SM00382 ATPases associated with a variety of cellular activities BSY240_3556 SM00382 ATPases associated with a variety of cellular activities BSY240_3559 SM00878 Biotin carboxylase C-terminal domain BSY240_3564 SM00861 Transketolase, pyrimidine binding domain BSY240_3566 SM00342 helix_turn_helix, arabinose operon control protein BSY240_3567 SM00822 BSY240_3567 BSY240_3571 SM00382 ATPases associated with a variety of cellular activities BSY240_3572 SM00382 ATPases associated with a variety of cellular activities BSY240_3580 SM00346 helix_turn_helix isocitrate lyase regulation BSY240_3586 SM00382 ATPases associated with a variety of cellular activities BSY240_3587 SM00382 ATPases associated with a variety of cellular activities BSY240_3602 SM00382 ATPases associated with a variety of cellular activities BSY240_3607 SM00382 ATPases associated with a variety of cellular activities BSY240_3608 SM00813 Alpha-L-arabinofuranosidase C-terminus BSY240_3609 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSY240_3611 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_3611 SM00895 BSY240_3611 BSY240_3613 SM00354 helix_turn _helix lactose operon repressor BSY240_3619 SM00382 ATPases associated with a variety of cellular activities BSY240_3620 SM01230 BSY240_3620 BSY240_3624 SM00530 Helix-turn-helix XRE-family like proteins BSY240_3629 SM00903 Flavin reductase like domain BSY240_363 SM00905 Dihydroneopterin aldolase BSY240_3632 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_3632 SM00866 BSY240_3632 BSY240_3634 SM00642 Alpha-amylase domain BSY240_3636 SM00861 Transketolase, pyrimidine binding domain BSY240_3643 SM00091 PAS domain BSY240_3678 SM00327 von Willebrand factor (vWF) type A domain BSY240_3679 SM00382 ATPases associated with a variety of cellular activities BSY240_368 SM00855 Phosphoglycerate mutase family BSY240_3683 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSY240_3686 SM00260 Two component signalling adaptor domain BSY240_3689 SM00382 ATPases associated with a variety of cellular activities BSY240_3692 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_3692 SM00895 BSY240_3692 BSY240_3693 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_3693 SM00895 BSY240_3693 BSY240_3694 SM00382 ATPases associated with a variety of cellular activities BSY240_37 SM00382 ATPases associated with a variety of cellular activities BSY240_3704 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_3704 SM00866 BSY240_3704 BSY240_3709 SM00382 ATPases associated with a variety of cellular activities BSY240_371 SM00091 PAS domain BSY240_371 SM00387 Histidine kinase-like ATPases BSY240_371 SM00388 His Kinase A (phosphoacceptor) domain BSY240_371 SM00448 cheY-homologous receiver domain BSY240_3711 SM01119 BSY240_3711 BSY240_3721 SM00052 Putative diguanylate phosphodiesterase BSY240_3721 SM00267 diguanylate cyclase BSY240_3724 SM00882 Coenzyme A transferase BSY240_3725 SM00882 Coenzyme A transferase BSY240_3726 SM00346 helix_turn_helix isocitrate lyase regulation BSY240_374 SM00382 ATPases associated with a variety of cellular activities BSY240_3741 SM00710 Parallel beta-helix repeats BSY240_3743 SM00382 ATPases associated with a variety of cellular activities BSY240_3747 SM00342 helix_turn_helix, arabinose operon control protein BSY240_3749 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_3749 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_375 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BSY240_3750 SM00387 Histidine kinase-like ATPases BSY240_3750 SM00388 His Kinase A (phosphoacceptor) domain BSY240_3751 SM00382 ATPases associated with a variety of cellular activities BSY240_3751 SM00448 cheY-homologous receiver domain BSY240_3755 SM00387 Histidine kinase-like ATPases BSY240_3755 SM00388 His Kinase A (phosphoacceptor) domain BSY240_3756 SM00448 cheY-homologous receiver domain BSY240_3756 SM00862 Transcriptional regulatory protein, C terminal BSY240_3758 SM00052 Putative diguanylate phosphodiesterase BSY240_3759 SM00642 Alpha-amylase domain BSY240_376 SM00267 diguanylate cyclase BSY240_3762 SM00354 helix_turn _helix lactose operon repressor BSY240_3781 SM00382 ATPases associated with a variety of cellular activities BSY240_3786 SM00878 Biotin carboxylase C-terminal domain BSY240_379 SM01329 BSY240_379 BSY240_3791 SM00530 Helix-turn-helix XRE-family like proteins BSY240_3793 SM00347 helix_turn_helix multiple antibiotic resistance protein BSY240_3803 SM00448 cheY-homologous receiver domain BSY240_3804 SM00911 HWE histidine kinase BSY240_3814 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BSY240_3814 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BSY240_3819 SM00346 helix_turn_helix isocitrate lyase regulation BSY240_3828 SM00382 ATPases associated with a variety of cellular activities BSY240_3835 SM00014 Acid phosphatase homologues BSY240_384 SM00116 Domain in cystathionine beta-synthase and other proteins. BSY240_384 SM01091 Transporter associated domain BSY240_3840 SM00382 ATPases associated with a variety of cellular activities BSY240_3844 SM00478 endonuclease III BSY240_3846 SM00342 helix_turn_helix, arabinose operon control protein BSY240_3857 SM00382 ATPases associated with a variety of cellular activities BSY240_3861 SM00382 ATPases associated with a variety of cellular activities BSY240_3864 SM00382 ATPases associated with a variety of cellular activities BSY240_387 SM00382 ATPases associated with a variety of cellular activities BSY240_3877 SM00354 helix_turn _helix lactose operon repressor BSY240_3882 SM00354 helix_turn _helix lactose operon repressor BSY240_3883 SM00382 ATPases associated with a variety of cellular activities BSY240_3892 SM00052 Putative diguanylate phosphodiesterase BSY240_3892 SM00267 diguanylate cyclase BSY240_3894 SM00450 Rhodanese Homology Domain BSY240_3898 SM00880 BSY240_3898 BSY240_3899 SM00382 ATPases associated with a variety of cellular activities BSY240_39 SM00382 ATPases associated with a variety of cellular activities BSY240_390 SM00363 S4 RNA-binding domain BSY240_390 SM01390 BSY240_390 BSY240_3900 SM01118 BSY240_3900 BSY240_3912 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_3912 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_3913 SM00320 WD40 repeats BSY240_3915 SM00833 Cobalamin synthesis protein cobW C-terminal domain BSY240_3918 SM00347 helix_turn_helix multiple antibiotic resistance protein BSY240_3919 SM00354 helix_turn _helix lactose operon repressor BSY240_3925 SM00052 Putative diguanylate phosphodiesterase BSY240_3925 SM00267 diguanylate cyclase BSY240_3928 SM00028 Tetratricopeptide repeats BSY240_3938 SM00642 Alpha-amylase domain BSY240_3942 SM00226 Low molecular weight phosphatase family BSY240_3943 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSY240_3947 SM00642 Alpha-amylase domain BSY240_3949 SM00327 von Willebrand factor (vWF) type A domain BSY240_3950 SM00460 Transglutaminase/protease-like homologues BSY240_3952 SM00460 Transglutaminase/protease-like homologues BSY240_3957 SM00448 cheY-homologous receiver domain BSY240_3974 SM00116 Domain in cystathionine beta-synthase and other proteins. BSY240_3977 SM00244 prohibitin homologues BSY240_3978 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_3978 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_3981 SM00257 Lysin motif BSY240_3991 SM00382 ATPases associated with a variety of cellular activities BSY240_3991 SM00448 cheY-homologous receiver domain BSY240_40 SM00382 ATPases associated with a variety of cellular activities BSY240_4000 SM00530 Helix-turn-helix XRE-family like proteins BSY240_4001 SM00028 Tetratricopeptide repeats BSY240_4004 SM01001 AIR carboxylase BSY240_4007 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSY240_4010 SM00671 Sel1-like repeats. BSY240_4016 SM00382 ATPases associated with a variety of cellular activities BSY240_4027 SM01091 Transporter associated domain BSY240_4029 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BSY240_4030 SM00861 Transketolase, pyrimidine binding domain BSY240_4033 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_4033 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_4036 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_404 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_4041 SM00382 ATPases associated with a variety of cellular activities BSY240_4053 SM00382 ATPases associated with a variety of cellular activities BSY240_4055 SM00966 SpoVT / AbrB like domain BSY240_4058 SM00966 SpoVT / AbrB like domain BSY240_4061 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_4061 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_4068 SM00978 BSY240_4068 BSY240_407 SM01211 BSY240_407 BSY240_4077 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BSY240_4081 SM00382 ATPases associated with a variety of cellular activities BSY240_4081 SM00448 cheY-homologous receiver domain BSY240_4082 SM00387 Histidine kinase-like ATPases BSY240_4082 SM00388 His Kinase A (phosphoacceptor) domain BSY240_4091 SM00986 Uracil DNA glycosylase superfamily BSY240_4091 SM00987 UreE urease accessory protein, C-terminal domain BSY240_4098 SM00788 Adenylosuccinate synthetase BSY240_4100 SM00382 ATPases associated with a variety of cellular activities BSY240_4103 SM00363 S4 RNA-binding domain BSY240_4110 SM00448 cheY-homologous receiver domain BSY240_4111 SM00448 cheY-homologous receiver domain BSY240_4111 SM00862 Transcriptional regulatory protein, C terminal BSY240_4117 SM00421 helix_turn_helix, Lux Regulon BSY240_412 SM00052 Putative diguanylate phosphodiesterase BSY240_412 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BSY240_412 SM00267 diguanylate cyclase BSY240_4130 SM00382 ATPases associated with a variety of cellular activities BSY240_4131 SM00382 ATPases associated with a variety of cellular activities BSY240_4135 SM00421 helix_turn_helix, Lux Regulon BSY240_4135 SM00448 cheY-homologous receiver domain BSY240_4136 SM00387 Histidine kinase-like ATPases BSY240_4136 SM00388 His Kinase A (phosphoacceptor) domain BSY240_4136 SM00448 cheY-homologous receiver domain BSY240_4138 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BSY240_4138 SM00448 cheY-homologous receiver domain BSY240_4138 SM00911 HWE histidine kinase BSY240_4143 SM00382 ATPases associated with a variety of cellular activities BSY240_4144 SM00382 ATPases associated with a variety of cellular activities BSY240_4153 SM00267 diguanylate cyclase BSY240_4154 SM00988 UreE urease accessory protein, N-terminal domain BSY240_4157 SM00100 Cyclic nucleotide-monophosphate binding domain BSY240_4157 SM00419 helix_turn_helix, cAMP Regulatory protein BSY240_4164 SM00382 ATPases associated with a variety of cellular activities BSY240_417 SM00998 Adenylosuccinate lyase C-terminus BSY240_4172 SM00052 Putative diguanylate phosphodiesterase BSY240_4172 SM00267 diguanylate cyclase BSY240_4172 SM01079 BSY240_4172 BSY240_4180 SM00382 ATPases associated with a variety of cellular activities BSY240_4190 SM00347 helix_turn_helix multiple antibiotic resistance protein BSY240_4192 SM00460 Transglutaminase/protease-like homologues BSY240_4196 SM00487 DEAD-like helicases superfamily BSY240_4196 SM00490 helicase superfamily c-terminal domain BSY240_4201 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_4201 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_4204 SM00091 PAS domain BSY240_4204 SM00387 Histidine kinase-like ATPases BSY240_4204 SM00388 His Kinase A (phosphoacceptor) domain BSY240_4204 SM00448 cheY-homologous receiver domain BSY240_4210 SM00829 Enoylreductase BSY240_4213 SM01230 BSY240_4213 BSY240_4214 SM00347 helix_turn_helix multiple antibiotic resistance protein BSY240_4226 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BSY240_4227 SM01092 CO dehydrogenase flavoprotein C-terminal domain BSY240_423 SM00903 Flavin reductase like domain BSY240_4239 SM00642 Alpha-amylase domain BSY240_4248 SM00450 Rhodanese Homology Domain BSY240_4255 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSY240_4257 SM00382 ATPases associated with a variety of cellular activities BSY240_4265 SM00530 Helix-turn-helix XRE-family like proteins BSY240_4268 SM00421 helix_turn_helix, Lux Regulon BSY240_4269 SM00344 helix_turn_helix ASNC type BSY240_4289 SM00530 Helix-turn-helix XRE-family like proteins BSY240_4296 SM00052 Putative diguanylate phosphodiesterase BSY240_4298 SM00344 helix_turn_helix ASNC type BSY240_4300 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSY240_4301 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSY240_4305 SM00530 Helix-turn-helix XRE-family like proteins BSY240_431 SM00487 DEAD-like helicases superfamily BSY240_431 SM00490 helicase superfamily c-terminal domain BSY240_4311 SM00267 diguanylate cyclase BSY240_4315 SM00917 LeuA allosteric (dimerisation) domain BSY240_4327 SM00382 ATPases associated with a variety of cellular activities BSY240_4331 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. BSY240_4339 SM00382 ATPases associated with a variety of cellular activities BSY240_4340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_4340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_4341 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_4341 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_4344 SM00382 ATPases associated with a variety of cellular activities BSY240_4350 SM00342 helix_turn_helix, arabinose operon control protein BSY240_4354 SM00419 helix_turn_helix, cAMP Regulatory protein BSY240_4365 SM00052 Putative diguanylate phosphodiesterase BSY240_4365 SM00091 PAS domain BSY240_4365 SM00267 diguanylate cyclase BSY240_4365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_4367 SM00052 Putative diguanylate phosphodiesterase BSY240_4367 SM00267 diguanylate cyclase BSY240_4371 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_4371 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_4373 SM01400 BSY240_4373 BSY240_4383 SM00387 Histidine kinase-like ATPases BSY240_4383 SM00388 His Kinase A (phosphoacceptor) domain BSY240_4384 SM00448 cheY-homologous receiver domain BSY240_4384 SM00862 Transcriptional regulatory protein, C terminal BSY240_4385 SM00347 helix_turn_helix multiple antibiotic resistance protein BSY240_4387 SM00849 Metallo-beta-lactamase superfamily BSY240_4389 SM00357 Cold shock protein domain BSY240_4401 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSY240_4404 SM00344 helix_turn_helix ASNC type BSY240_4408 SM00729 Elongator protein 3, MiaB family, Radical SAM BSY240_4409 SM00986 Uracil DNA glycosylase superfamily BSY240_4409 SM00987 UreE urease accessory protein, C-terminal domain BSY240_4411 SM00448 cheY-homologous receiver domain BSY240_4411 SM00862 Transcriptional regulatory protein, C terminal BSY240_4412 SM00387 Histidine kinase-like ATPases BSY240_4412 SM00388 His Kinase A (phosphoacceptor) domain BSY240_4417 SM00851 MGS-like domain BSY240_4417 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BSY240_442 SM00100 Cyclic nucleotide-monophosphate binding domain BSY240_442 SM00419 helix_turn_helix, cAMP Regulatory protein BSY240_4420 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_4420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_4422 SM00829 Enoylreductase BSY240_4424 SM00850 LytTr DNA-binding domain BSY240_4429 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BSY240_443 SM00729 Elongator protein 3, MiaB family, Radical SAM BSY240_4433 SM00400 zinc finger BSY240_4433 SM00493 BSY240_4433 BSY240_4434 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain BSY240_4449 SM00530 Helix-turn-helix XRE-family like proteins BSY240_4458 SM00382 ATPases associated with a variety of cellular activities BSY240_4462 SM00342 helix_turn_helix, arabinose operon control protein BSY240_4464 SM00382 ATPases associated with a variety of cellular activities BSY240_447 SM00825 Beta-ketoacyl synthase BSY240_448 SM00829 Enoylreductase BSY240_4487 SM00387 Histidine kinase-like ATPases BSY240_4487 SM00388 His Kinase A (phosphoacceptor) domain BSY240_4488 SM00448 cheY-homologous receiver domain BSY240_4488 SM00862 Transcriptional regulatory protein, C terminal BSY240_4492 SM00822 BSY240_4492 BSY240_4494 SM00342 helix_turn_helix, arabinose operon control protein BSY240_4497 SM00342 helix_turn_helix, arabinose operon control protein BSY240_45 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_45 SM00866 BSY240_45 BSY240_450 SM00091 PAS domain BSY240_4504 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BSY240_4505 SM00346 helix_turn_helix isocitrate lyase regulation BSY240_4510 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_4510 SM00895 BSY240_4510 BSY240_4514 SM00382 ATPases associated with a variety of cellular activities BSY240_4520 SM00530 Helix-turn-helix XRE-family like proteins BSY240_4523 SM00829 Enoylreductase BSY240_4524 SM00382 ATPases associated with a variety of cellular activities BSY240_4529 SM00878 Biotin carboxylase C-terminal domain BSY240_4530 SM00796 Allophanate hydrolase subunit 1 BSY240_4531 SM00797 Allophanate hydrolase subunit 2 BSY240_4533 SM00382 ATPases associated with a variety of cellular activities BSY240_4541 SM00530 Helix-turn-helix XRE-family like proteins BSY240_4544 SM00530 Helix-turn-helix XRE-family like proteins BSY240_4547 SM00267 diguanylate cyclase BSY240_4549 SM00357 Cold shock protein domain BSY240_4550 SM00530 Helix-turn-helix XRE-family like proteins BSY240_4552 SM00530 Helix-turn-helix XRE-family like proteins BSY240_4556 SM00052 Putative diguanylate phosphodiesterase BSY240_4559 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BSY240_4562 SM00984 UDP binding domain BSY240_4574 SM00382 ATPases associated with a variety of cellular activities BSY240_460 SM01350 BSY240_460 BSY240_4604 SM00354 helix_turn _helix lactose operon repressor BSY240_4607 SM00382 ATPases associated with a variety of cellular activities BSY240_461 SM00849 Metallo-beta-lactamase superfamily BSY240_4610 SM01120 BSY240_4610 BSY240_4612 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_4612 SM00895 BSY240_4612 BSY240_4613 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BSY240_4617 SM00100 Cyclic nucleotide-monophosphate binding domain BSY240_462 SM00267 diguanylate cyclase BSY240_4625 SM00342 helix_turn_helix, arabinose operon control protein BSY240_463 SM00354 helix_turn _helix lactose operon repressor BSY240_4632 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_4632 SM00387 Histidine kinase-like ATPases BSY240_4632 SM00388 His Kinase A (phosphoacceptor) domain BSY240_4633 SM00448 cheY-homologous receiver domain BSY240_4633 SM00862 Transcriptional regulatory protein, C terminal BSY240_4634 SM00287 Bacterial SH3 domain homologues BSY240_4638 SM00382 ATPases associated with a variety of cellular activities BSY240_4646 SM00421 helix_turn_helix, Lux Regulon BSY240_4647 SM00342 helix_turn_helix, arabinose operon control protein BSY240_4649 SM00327 von Willebrand factor (vWF) type A domain BSY240_4652 SM00354 helix_turn _helix lactose operon repressor BSY240_4656 SM00382 ATPases associated with a variety of cellular activities BSY240_4665 SM00530 Helix-turn-helix XRE-family like proteins BSY240_4666 SM00267 diguanylate cyclase BSY240_467 SM00382 ATPases associated with a variety of cellular activities BSY240_4675 SM00773 Proposed nucleic acid binding domain BSY240_4691 SM00671 Sel1-like repeats. BSY240_4703 SM00984 UDP binding domain BSY240_4725 SM00530 Helix-turn-helix XRE-family like proteins BSY240_4729 SM00382 ATPases associated with a variety of cellular activities BSY240_4735 SM00530 Helix-turn-helix XRE-family like proteins BSY240_4743 SM00382 ATPases associated with a variety of cellular activities BSY240_4747 SM00342 helix_turn_helix, arabinose operon control protein BSY240_4755 SM00862 Transcriptional regulatory protein, C terminal BSY240_4756 SM00448 cheY-homologous receiver domain BSY240_4756 SM00862 Transcriptional regulatory protein, C terminal BSY240_4757 SM00421 helix_turn_helix, Lux Regulon BSY240_4764 SM00382 ATPases associated with a variety of cellular activities BSY240_4767 SM00382 ATPases associated with a variety of cellular activities BSY240_4770 SM00470 ParB-like nuclease domain BSY240_4772 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_4772 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_48 SM00530 Helix-turn-helix XRE-family like proteins BSY240_480 SM00530 Helix-turn-helix XRE-family like proteins BSY240_488 SM00116 Domain in cystathionine beta-synthase and other proteins. BSY240_488 SM00924 MgtE intracellular N domain BSY240_489 SM00422 helix_turn_helix, mercury resistance BSY240_498 SM00357 Cold shock protein domain BSY240_499 SM00271 DnaJ molecular chaperone homology domain BSY240_50 SM00382 ATPases associated with a variety of cellular activities BSY240_505 SM00487 DEAD-like helicases superfamily BSY240_505 SM00490 helicase superfamily c-terminal domain BSY240_507 SM00052 Putative diguanylate phosphodiesterase BSY240_507 SM00267 diguanylate cyclase BSY240_510 SM00530 Helix-turn-helix XRE-family like proteins BSY240_512 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_512 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_512 SM01049 BSY240_512 BSY240_516 SM00342 helix_turn_helix, arabinose operon control protein BSY240_52 SM01130 BSY240_52 BSY240_521 SM00855 Phosphoglycerate mutase family BSY240_524 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_538 SM01018 B12 binding domain BSY240_545 SM00382 ATPases associated with a variety of cellular activities BSY240_558 SM00487 DEAD-like helicases superfamily BSY240_567 SM00382 ATPases associated with a variety of cellular activities BSY240_571 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSY240_571 SM00895 BSY240_571 BSY240_575 SM00487 DEAD-like helicases superfamily BSY240_575 SM00490 helicase superfamily c-terminal domain BSY240_577 SM00487 DEAD-like helicases superfamily BSY240_577 SM00490 helicase superfamily c-terminal domain BSY240_577 SM00982 BSY240_577 BSY240_577 SM01058 CarD-like/TRCF domain BSY240_582 SM00992 Hemimethylated DNA-binding protein YccV like BSY240_584 SM01230 BSY240_584 BSY240_585 SM00938 Nitrogen regulatory protein P-II BSY240_59 SM00062 Bacterial periplasmic substrate-binding proteins BSY240_598 SM00382 ATPases associated with a variety of cellular activities BSY240_607 SM00387 Histidine kinase-like ATPases BSY240_611 SM00434 DNA Topoisomerase IV BSY240_62 SM00354 helix_turn _helix lactose operon repressor BSY240_624 SM00758 BSY240_624 BSY240_624 SM01217 BSY240_624 BSY240_628 SM00849 Metallo-beta-lactamase superfamily BSY240_633 SM00936 Penicillin-binding protein 5, C-terminal domain BSY240_637 SM00834 Putative regulatory protein BSY240_639 SM00382 ATPases associated with a variety of cellular activities BSY240_64 SM00382 ATPases associated with a variety of cellular activities BSY240_640 SM00382 ATPases associated with a variety of cellular activities BSY240_644 SM00387 Histidine kinase-like ATPases BSY240_644 SM00388 His Kinase A (phosphoacceptor) domain BSY240_644 SM00448 cheY-homologous receiver domain BSY240_645 SM00421 helix_turn_helix, Lux Regulon BSY240_645 SM00448 cheY-homologous receiver domain BSY240_646 SM00850 LytTr DNA-binding domain BSY240_647 SM01092 CO dehydrogenase flavoprotein C-terminal domain BSY240_649 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BSY240_650 SM00382 ATPases associated with a variety of cellular activities BSY240_660 SM00382 ATPases associated with a variety of cellular activities BSY240_672 SM00729 Elongator protein 3, MiaB family, Radical SAM BSY240_677 SM00382 ATPases associated with a variety of cellular activities BSY240_677 SM00448 cheY-homologous receiver domain BSY240_678 SM00091 PAS domain BSY240_678 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_678 SM00387 Histidine kinase-like ATPases BSY240_678 SM00388 His Kinase A (phosphoacceptor) domain BSY240_679 SM00382 ATPases associated with a variety of cellular activities BSY240_679 SM00448 cheY-homologous receiver domain BSY240_680 SM00387 Histidine kinase-like ATPases BSY240_680 SM00388 His Kinase A (phosphoacceptor) domain BSY240_687 SM00729 Elongator protein 3, MiaB family, Radical SAM BSY240_693 SM00861 Transketolase, pyrimidine binding domain BSY240_696 SM01192 BSY240_696 BSY240_696 SM01193 BSY240_696 BSY240_707 SM00852 Probable molybdopterin binding domain BSY240_712 SM00387 Histidine kinase-like ATPases BSY240_712 SM00433 TopoisomeraseII BSY240_716 SM00903 Flavin reductase like domain BSY240_719 SM00563 Phosphate acyltransferases BSY240_720 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BSY240_722 SM01234 BSY240_722 BSY240_727 SM00116 Domain in cystathionine beta-synthase and other proteins. BSY240_73 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_737 SM00382 ATPases associated with a variety of cellular activities BSY240_739 SM00833 Cobalamin synthesis protein cobW C-terminal domain BSY240_746 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSY240_761 SM00382 ATPases associated with a variety of cellular activities BSY240_761 SM01086 C-terminal, D2-small domain, of ClpB protein BSY240_765 SM00971 Serine acetyltransferase, N-terminal BSY240_771 SM00062 Bacterial periplasmic substrate-binding proteins BSY240_774 SM00382 ATPases associated with a variety of cellular activities BSY240_780 SM00357 Cold shock protein domain BSY240_8 SM00382 ATPases associated with a variety of cellular activities BSY240_8 SM00989 BSY240_8 BSY240_82 SM00052 Putative diguanylate phosphodiesterase BSY240_82 SM00267 diguanylate cyclase BSY240_83 SM00116 Domain in cystathionine beta-synthase and other proteins. BSY240_835 SM00421 helix_turn_helix, Lux Regulon BSY240_837 SM00344 helix_turn_helix ASNC type BSY240_84 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_84 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_843 SM00903 Flavin reductase like domain BSY240_847 SM00382 ATPases associated with a variety of cellular activities BSY240_863 SM01323 BSY240_863 BSY240_865 SM00257 Lysin motif BSY240_872 SM00382 ATPases associated with a variety of cellular activities BSY240_878 SM00836 DALR anticodon binding domain BSY240_878 SM01016 Arginyl tRNA synthetase N terminal dom BSY240_879 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSY240_882 SM00671 Sel1-like repeats. BSY240_899 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BSY240_900 SM00450 Rhodanese Homology Domain BSY240_905 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BSY240_905 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BSY240_906 SM00344 helix_turn_helix ASNC type BSY240_912 SM00052 Putative diguanylate phosphodiesterase BSY240_912 SM00267 diguanylate cyclase BSY240_919 SM00382 ATPases associated with a variety of cellular activities BSY240_924 SM00852 Probable molybdopterin binding domain BSY240_930 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSY240_934 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSY240_934 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSY240_937 SM00465 GIY-YIG type nucleases (URI domain) BSY240_94 SM00382 ATPases associated with a variety of cellular activities BSY240_942 SM00267 diguanylate cyclase BSY240_943 SM00382 ATPases associated with a variety of cellular activities BSY240_944 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSY240_951 SM01007 Class II Aldolase and Adducin N-terminal domain BSY240_965 SM00662 RNA polymerases D BSY240_978 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BSY240_979 SM01374 BSY240_979 BSY240_983 SM00322 K homology RNA-binding domain BSY240_986 SM01382 BSY240_986 BSY240_986 SM01383 BSY240_986 BSY240_990 SM01403 BSY240_990 BSY240_992 SM00838 Elongation factor G C-terminus BSY240_992 SM00889 Elongation factor G, domain IV BSY240_996 SM00663 RNA polymerase I subunit A N-terminus