locus-tag class description At12D1_00010 PF00308 Bacterial dnaA protein At12D1_00010 PF08299 Bacterial dnaA protein helix-turn-helix At12D1_00010 PF11638 DnaA N-terminal domain At12D1_00020 PF04055 Radical SAM superfamily At12D1_00020 PF06969 HemN C-terminal domain At12D1_00030 PF01725 Ham1 family At12D1_00040 PF01138 3' exoribonuclease family, domain 1 At12D1_00040 PF03725 3' exoribonuclease family, domain 2 At12D1_00050 PF01628 HrcA protein C terminal domain At12D1_00060 PF01025 GrpE At12D1_00070 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 At12D1_00080 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein At12D1_00080 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus At12D1_00090 PF04552 Sigma-54, DNA binding domain At12D1_00090 PF04963 Sigma-54 factor, core binding domain At12D1_00090 PF00309 Sigma-54 factor, Activator interacting domain (AID) At12D1_00100 PF00005 ABC transporter At12D1_00110 PF03968 OstA-like protein At12D1_00130 PF01343 Peptidase family S49 At12D1_00140 PF00216 Bacterial DNA-binding protein At12D1_00160 PF17785 PUA-like domain At12D1_00160 PF10672 S-adenosylmethionine-dependent methyltransferase At12D1_00170 PF08032 RNA 2'-O ribose methyltransferase substrate binding At12D1_00170 PF00588 SpoU rRNA Methylase family At12D1_00180 PF01252 Signal peptidase (SPase) II At12D1_00190 PF00672 HAMP domain At12D1_00190 PF00072 Response regulator receiver domain At12D1_00190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_00190 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) At12D1_00190 PF01627 Hpt domain At12D1_00190 PF00512 His Kinase A (phospho-acceptor) domain At12D1_00210 PF00488 MutS domain V At12D1_00210 PF01624 MutS domain I At12D1_00210 PF05188 MutS domain II At12D1_00210 PF05192 MutS domain III At12D1_00210 PF05190 MutS family domain IV At12D1_00220 PF01909 Nucleotidyltransferase domain At12D1_00220 PF01842 ACT domain At12D1_00220 PF01966 HD domain At12D1_00220 PF08335 GlnD PII-uridylyltransferase At12D1_00230 PF03023 Lipid II flippase MurJ At12D1_00250 PF00579 tRNA synthetases class I (W and Y) At12D1_00270 PF01106 NifU-like domain At12D1_00280 PF00814 Glycoprotease family At12D1_00300 PF01475 Ferric uptake regulator family At12D1_00310 PF01553 Acyltransferase At12D1_00320 PF04055 Radical SAM superfamily At12D1_00320 PF01938 TRAM domain At12D1_00320 PF00919 Uncharacterized protein family UPF0004 At12D1_00330 PF02562 PhoH-like protein At12D1_00340 PF02130 Uncharacterized protein family UPF0054 At12D1_00350 PF00571 CBS domain At12D1_00350 PF03471 Transporter associated domain At12D1_00360 PF00795 Carbon-nitrogen hydrolase At12D1_00370 PF01381 Helix-turn-helix At12D1_00380 PF02772 S-adenosylmethionine synthetase, central domain At12D1_00380 PF00438 S-adenosylmethionine synthetase, N-terminal domain At12D1_00380 PF02773 S-adenosylmethionine synthetase, C-terminal domain At12D1_00390 PF02390 Putative methyltransferase At12D1_00400 PF00294 pfkB family carbohydrate kinase At12D1_00410 PF02646 RmuC family At12D1_00420 PF01327 Polypeptide deformylase At12D1_00430 PF00551 Formyl transferase At12D1_00430 PF02911 Formyl transferase, C-terminal domain At12D1_00440 PF01416 tRNA pseudouridine synthase At12D1_00460 PF07687 Peptidase dimerisation domain At12D1_00460 PF01546 Peptidase family M20/M25/M40 At12D1_00470 PF00132 Bacterial transferase hexapeptide (six repeats) At12D1_00470 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal At12D1_00470 PF14602 Hexapeptide repeat of succinyl-transferase At12D1_00490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_00490 PF00672 HAMP domain At12D1_00500 PF01156 Inosine-uridine preferring nucleoside hydrolase At12D1_00510 PF00011 Hsp20/alpha crystallin family At12D1_00560 PF00696 Amino acid kinase family At12D1_00580 PF01926 50S ribosome-binding GTPase At12D1_00590 PF02096 60Kd inner membrane protein At12D1_00590 PF14849 YidC periplasmic domain At12D1_00600 PF00825 Ribonuclease P At12D1_00610 PF02203 Tar ligand binding domain homologue At12D1_00610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_00610 PF00672 HAMP domain At12D1_00630 PF00512 His Kinase A (phospho-acceptor) domain At12D1_00630 PF00672 HAMP domain At12D1_00630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_00640 PF01209 ubiE/COQ5 methyltransferase family At12D1_00660 PF00005 ABC transporter At12D1_00670 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_00680 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_00700 PF00149 Calcineurin-like phosphoesterase At12D1_00710 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain At12D1_00710 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain At12D1_00730 PF05544 Proline racemase At12D1_00740 PF01979 Amidohydrolase family At12D1_00750 PF00156 Phosphoribosyl transferase domain At12D1_00760 PF00294 pfkB family carbohydrate kinase At12D1_00790 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain At12D1_00790 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain At12D1_00800 PF00342 Phosphoglucose isomerase At12D1_00810 PF13193 AMP-binding enzyme C-terminal domain At12D1_00810 PF00501 AMP-binding enzyme At12D1_00820 PF08402 TOBE domain At12D1_00820 PF00005 ABC transporter At12D1_00840 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_00850 PF00593 TonB dependent receptor At12D1_00850 PF07715 TonB-dependent Receptor Plug Domain At12D1_00890 PF01679 Proteolipid membrane potential modulator At12D1_00930 PF03976 Polyphosphate kinase 2 (PPK2) At12D1_00940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_00940 PF00512 His Kinase A (phospho-acceptor) domain At12D1_00940 PF00989 PAS fold At12D1_00940 PF16736 Single Cache-like At12D1_00950 PF12849 PBP superfamily domain At12D1_00960 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_00970 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_00980 PF00005 ABC transporter At12D1_00990 PF01895 PhoU domain At12D1_01000 PF00072 Response regulator receiver domain At12D1_01000 PF00486 Transcriptional regulatory protein, C terminal At12D1_01020 PF00202 Aminotransferase class-III At12D1_01030 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain At12D1_01030 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain At12D1_01040 PF01430 Hsp33 protein At12D1_01050 PF04379 ApaG domain At12D1_01060 PF01053 Cys/Met metabolism PLP-dependent enzyme At12D1_01070 PF00692 dUTPase At12D1_01080 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family At12D1_01090 PF00230 Major intrinsic protein At12D1_01180 PF00072 Response regulator receiver domain At12D1_01180 PF00196 Bacterial regulatory proteins, luxR family At12D1_01200 PF01180 Dihydroorotate dehydrogenase At12D1_01230 PF08241 Methyltransferase domain At12D1_01270 PF02082 Transcriptional regulator At12D1_01280 PF00271 Helicase conserved C-terminal domain At12D1_01280 PF00270 DEAD/DEAH box helicase At12D1_01280 PF08494 DEAD/H associated At12D1_01320 PF01925 Sulfite exporter TauE/SafE At12D1_01340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain At12D1_01340 PF02770 Acyl-CoA dehydrogenase, middle domain At12D1_01340 PF12806 Acetyl-CoA dehydrogenase C-terminal like At12D1_01340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain At12D1_01350 PF02803 Thiolase, C-terminal domain At12D1_01350 PF00108 Thiolase, N-terminal domain At12D1_01360 PF00378 Enoyl-CoA hydratase/isomerase At12D1_01360 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain At12D1_01360 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain At12D1_01390 PF03334 Na+/H+ antiporter subunit At12D1_01400 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) At12D1_01410 PF01899 Na+/H+ ion antiporter subunit At12D1_01420 PF00361 Proton-conducting membrane transporter At12D1_01430 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L At12D1_01440 PF13244 Domain of unknown function (DUF4040) At12D1_01440 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter At12D1_01440 PF00361 Proton-conducting membrane transporter At12D1_01440 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus At12D1_01460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_01490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_01490 PF02895 Signal transducing histidine kinase, homodimeric domain At12D1_01490 PF01584 CheW-like domain At12D1_01490 PF01627 Hpt domain At12D1_01500 PF03705 CheR methyltransferase, all-alpha domain At12D1_01500 PF01739 CheR methyltransferase, SAM binding domain At12D1_01510 PF00072 Response regulator receiver domain At12D1_01510 PF01339 CheB methylesterase At12D1_01520 PF00072 Response regulator receiver domain At12D1_01530 PF03975 CheD chemotactic sensory transduction At12D1_01550 PF08345 Flagellar M-ring protein C-terminal At12D1_01550 PF01514 Secretory protein of YscJ/FliF family At12D1_01560 PF03472 Autoinducer binding domain At12D1_01560 PF00196 Bacterial regulatory proteins, luxR family At12D1_01580 PF00672 HAMP domain At12D1_01580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_01590 PF01627 Hpt domain At12D1_01590 PF00512 His Kinase A (phospho-acceptor) domain At12D1_01590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_01590 PF00672 HAMP domain At12D1_01590 PF00072 Response regulator receiver domain At12D1_01600 PF01741 Large-conductance mechanosensitive channel, MscL At12D1_01610 PF00155 Aminotransferase class I and II At12D1_01620 PF01370 NAD dependent epimerase/dehydratase family At12D1_01640 PF03884 DNA gyrase inhibitor YacG At12D1_01650 PF02545 Maf-like protein At12D1_01660 PF01176 Translation initiation factor 1A / IF-1 At12D1_01680 PF06793 Uncharacterised protein family (UPF0262) At12D1_01690 PF00815 Histidinol dehydrogenase At12D1_01710 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) At12D1_01730 PF00700 Bacterial flagellin C-terminal helical region At12D1_01730 PF00669 Bacterial flagellin N-terminal helical region At12D1_01740 PF00700 Bacterial flagellin C-terminal helical region At12D1_01740 PF00669 Bacterial flagellin N-terminal helical region At12D1_01750 PF00669 Bacterial flagellin N-terminal helical region At12D1_01750 PF00700 Bacterial flagellin C-terminal helical region At12D1_01760 PF00813 FliP family At12D1_01780 PF02107 Flagellar L-ring protein At12D1_01800 PF02119 Flagellar P-ring protein At12D1_01810 PF13144 Chaperone for flagella basal body P-ring formation At12D1_01820 PF06429 Flagellar basal body rod FlgEFG protein C-terminal At12D1_01820 PF00460 Flagella basal body rod protein At12D1_01830 PF02049 Flagellar hook-basal body complex protein FliE At12D1_01840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal At12D1_01850 PF00460 Flagella basal body rod protein At12D1_01870 PF18269 T3SS EscN ATPase C-terminal domain At12D1_01870 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain At12D1_01880 PF06429 Flagellar basal body rod FlgEFG protein C-terminal At12D1_01880 PF00460 Flagella basal body rod protein At12D1_01900 PF01618 MotA/TolQ/ExbB proton channel family At12D1_01910 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term At12D1_01920 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term At12D1_01930 PF14842 FliG N-terminal domain At12D1_01930 PF14841 FliG middle domain At12D1_01930 PF01706 FliG C-terminal domain At12D1_01940 PF01312 FlhB HrpN YscU SpaS Family At12D1_01960 PF00700 Bacterial flagellin C-terminal helical region At12D1_01960 PF00669 Bacterial flagellin N-terminal helical region At12D1_01980 PF00691 OmpA family At12D1_01980 PF13677 Membrane MotB of proton-channel complex MotA/MotB At12D1_02020 PF00486 Transcriptional regulatory protein, C terminal At12D1_02030 PF07559 Flagellar basal body protein FlaE At12D1_02030 PF00460 Flagella basal body rod protein At12D1_02030 PF06429 Flagellar basal body rod FlgEFG protein C-terminal At12D1_02070 PF07378 Flagellar protein FlbT At12D1_02080 PF03963 Flagellar hook capping protein - N-terminal region At12D1_02090 PF01313 Bacterial export proteins, family 3 At12D1_02100 PF00771 FHIPEP family At12D1_02110 PF01311 Bacterial export proteins, family 1 At12D1_02180 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain At12D1_02180 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain At12D1_02190 PF00356 Bacterial regulatory proteins, lacI family At12D1_02200 PF01547 Bacterial extracellular solute-binding protein At12D1_02210 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_02220 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_02230 PF00128 Alpha amylase, catalytic domain At12D1_02240 PF03459 TOBE domain At12D1_02240 PF17912 MalK OB fold domain At12D1_02240 PF00005 ABC transporter At12D1_02270 PF00920 Dehydratase family At12D1_02280 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase At12D1_02290 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain At12D1_02290 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain At12D1_02310 PF01266 FAD dependent oxidoreductase At12D1_02320 PF00120 Glutamine synthetase, catalytic domain At12D1_02370 PF00463 Isocitrate lyase family At12D1_02380 PF06114 IrrE N-terminal-like domain At12D1_02380 PF01381 Helix-turn-helix At12D1_02380 PF09856 Predicted transcriptional regulator (DUF2083) At12D1_02390 PF13416 Bacterial extracellular solute-binding protein At12D1_02400 PF00005 ABC transporter At12D1_02400 PF08402 TOBE domain At12D1_02410 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_02420 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_02440 PF13426 PAS domain At12D1_02440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_02440 PF13188 PAS domain At12D1_02440 PF00989 PAS fold At12D1_02440 PF00512 His Kinase A (phospho-acceptor) domain At12D1_02450 PF02541 Ppx/GppA phosphatase family At12D1_02460 PF01728 FtsJ-like methyltransferase At12D1_02470 PF07690 Major Facilitator Superfamily At12D1_02480 PF00753 Metallo-beta-lactamase superfamily At12D1_02490 PF00571 CBS domain At12D1_02490 PF00478 IMP dehydrogenase / GMP reductase domain At12D1_02510 PF00107 Zinc-binding dehydrogenase At12D1_02510 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_02520 PF01738 Dienelactone hydrolase family At12D1_02530 PF00994 Probable molybdopterin binding domain At12D1_02540 PF00288 GHMP kinases N terminal domain At12D1_02540 PF08544 GHMP kinases C terminal At12D1_02560 PF00348 Polyprenyl synthetase At12D1_02590 PF06965 Na+/H+ antiporter 1 At12D1_02590 PF01343 Peptidase family S49 At12D1_02610 PF02091 Glycyl-tRNA synthetase alpha subunit At12D1_02630 PF04011 LemA family At12D1_02640 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) At12D1_02660 PF05746 DALR anticodon binding domain At12D1_02660 PF02092 Glycyl-tRNA synthetase beta subunit At12D1_02670 PF04463 Protein of unknown function (DUF523) At12D1_02680 PF17200 Single Cache domain 2 At12D1_02680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_02680 PF00672 HAMP domain At12D1_02700 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain At12D1_02700 PF02843 Phosphoribosylglycinamide synthetase, C domain At12D1_02700 PF02844 Phosphoribosylglycinamide synthetase, N domain At12D1_02710 PF16921 Tex protein YqgF-like domain At12D1_02710 PF17674 HHH domain At12D1_02710 PF00575 S1 RNA binding domain At12D1_02710 PF09371 Tex-like protein N-terminal domain At12D1_02740 PF01040 UbiA prenyltransferase family At12D1_02770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_02770 PF03466 LysR substrate binding domain At12D1_02790 PF04107 Glutamate-cysteine ligase family 2(GCS2) At12D1_02800 PF04452 RNA methyltransferase At12D1_02810 PF01384 Phosphate transporter family At12D1_02830 PF05116 Sucrose-6F-phosphate phosphohydrolase At12D1_02840 PF00534 Glycosyl transferases group 1 At12D1_02840 PF13439 Glycosyltransferase Family 4 At12D1_02850 PF00392 Bacterial regulatory proteins, gntR family At12D1_02850 PF07729 FCD domain At12D1_02870 PF03466 LysR substrate binding domain At12D1_02870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_02880 PF02913 FAD linked oxidases, C-terminal domain At12D1_02880 PF01565 FAD binding domain At12D1_02890 PF01565 FAD binding domain At12D1_02890 PF02913 FAD linked oxidases, C-terminal domain At12D1_02900 PF13183 4Fe-4S dicluster domain At12D1_02900 PF02754 Cysteine-rich domain At12D1_02920 PF03734 L,D-transpeptidase catalytic domain At12D1_02920 PF17969 L,D-transpeptidase C-terminal domain At12D1_02930 PF03352 Methyladenine glycosylase At12D1_02950 PF03601 Conserved hypothetical protein 698 At12D1_02960 PF03466 LysR substrate binding domain At12D1_02960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_03020 PF03129 Anticodon binding domain At12D1_03020 PF13393 Histidyl-tRNA synthetase At12D1_03040 PF13393 Histidyl-tRNA synthetase At12D1_03050 PF01634 ATP phosphoribosyltransferase At12D1_03060 PF07681 DoxX At12D1_03080 PF00118 TCP-1/cpn60 chaperonin family At12D1_03090 PF00166 Chaperonin 10 Kd subunit At12D1_03110 PF06574 FAD synthetase At12D1_03110 PF01687 Riboflavin kinase At12D1_03120 PF08264 Anticodon-binding domain of tRNA At12D1_03120 PF00133 tRNA synthetases class I (I, L, M and V) At12D1_03140 PF14437 MafB19-like deaminase At12D1_03150 PF01479 S4 domain At12D1_03150 PF00849 RNA pseudouridylate synthase At12D1_03170 PF01734 Patatin-like phospholipase At12D1_03180 PF00999 Sodium/hydrogen exchanger family At12D1_03180 PF02254 TrkA-N domain At12D1_03190 PF01523 Putative modulator of DNA gyrase At12D1_03200 PF00459 Inositol monophosphatase family At12D1_03220 PF00534 Glycosyl transferases group 1 At12D1_03220 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) At12D1_03240 PF02606 Tetraacyldisaccharide-1-P 4'-kinase At12D1_03260 PF08676 MutL C terminal dimerisation domain At12D1_03260 PF01119 DNA mismatch repair protein, C-terminal domain At12D1_03270 PF00072 Response regulator receiver domain At12D1_03270 PF00486 Transcriptional regulatory protein, C terminal At12D1_03280 PF13188 PAS domain At12D1_03280 PF03707 Bacterial signalling protein N terminal repeat At12D1_03280 PF00990 Diguanylate cyclase, GGDEF domain At12D1_03280 PF00563 EAL domain At12D1_03290 PF08450 SMP-30/Gluconolactonase/LRE-like region At12D1_03300 PF01081 KDPG and KHG aldolase At12D1_03310 PF05035 2-keto-3-deoxy-galactonokinase At12D1_03330 PF01614 Bacterial transcriptional regulator At12D1_03330 PF09339 IclR helix-turn-helix domain At12D1_03340 PF00196 Bacterial regulatory proteins, luxR family At12D1_03340 PF03472 Autoinducer binding domain At12D1_03360 PF10609 NUBPL iron-transfer P-loop NTPase At12D1_03370 PF01544 CorA-like Mg2+ transporter protein At12D1_03380 PF02705 K+ potassium transporter At12D1_03410 PF00119 ATP synthase A chain At12D1_03420 PF00137 ATP synthase subunit C At12D1_03430 PF00430 ATP synthase B/B' CF(0) At12D1_03440 PF00430 ATP synthase B/B' CF(0) At12D1_03450 PF09828 Chromate resistance exported protein At12D1_03460 PF02417 Chromate transporter At12D1_03470 PF01351 Ribonuclease HII At12D1_03500 PF02913 FAD linked oxidases, C-terminal domain At12D1_03500 PF01565 FAD binding domain At12D1_03510 PF01300 Telomere recombination At12D1_03510 PF03481 Putative GTP-binding controlling metal-binding At12D1_03530 PF00355 Rieske [2Fe-2S] domain At12D1_03530 PF00848 Ring hydroxylating alpha subunit (catalytic domain) At12D1_03540 PF00111 2Fe-2S iron-sulfur cluster binding domain At12D1_03540 PF00970 Oxidoreductase FAD-binding domain At12D1_03540 PF00175 Oxidoreductase NAD-binding domain At12D1_03550 PF07886 BA14K-like protein At12D1_03560 PF07886 BA14K-like protein At12D1_03580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain At12D1_03580 PF12806 Acetyl-CoA dehydrogenase C-terminal like At12D1_03580 PF02770 Acyl-CoA dehydrogenase, middle domain At12D1_03580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain At12D1_03610 PF05958 tRNA (Uracil-5-)-methyltransferase At12D1_03620 PF01728 FtsJ-like methyltransferase At12D1_03620 PF01479 S4 domain At12D1_03630 PF02203 Tar ligand binding domain homologue At12D1_03630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_03630 PF00672 HAMP domain At12D1_03650 PF01037 Lrp/AsnC ligand binding domain At12D1_03700 PF02780 Transketolase, C-terminal domain At12D1_03700 PF02779 Transketolase, pyrimidine binding domain At12D1_03700 PF13292 1-deoxy-D-xylulose-5-phosphate synthase At12D1_03710 PF02678 Pirin At12D1_03710 PF05726 Pirin C-terminal cupin domain At12D1_03720 PF02609 Exonuclease VII small subunit At12D1_03730 PF00850 Histone deacetylase domain At12D1_03740 PF02632 BioY family At12D1_03750 PF02361 Cobalt transport protein At12D1_03760 PF00005 ABC transporter At12D1_03770 PF06224 Winged helix DNA-binding domain At12D1_03780 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase At12D1_03780 PF00925 GTP cyclohydrolase II At12D1_03790 PF01264 Chorismate synthase At12D1_03810 PF00300 Histidine phosphatase superfamily (branch 1) At12D1_03830 PF00226 DnaJ domain At12D1_03830 PF01556 DnaJ C terminal domain At12D1_03830 PF00684 DnaJ central domain At12D1_03850 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region At12D1_03850 PF01243 Pyridoxamine 5'-phosphate oxidase At12D1_03890 PF13419 Haloacid dehalogenase-like hydrolase At12D1_03910 PF01523 Putative modulator of DNA gyrase At12D1_03930 PF02790 Cytochrome C oxidase subunit II, transmembrane domain At12D1_03930 PF00116 Cytochrome C oxidase subunit II, periplasmic domain At12D1_03940 PF00115 Cytochrome C and Quinol oxidase polypeptide I At12D1_03950 PF01040 UbiA prenyltransferase family At12D1_03970 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 At12D1_03980 PF00510 Cytochrome c oxidase subunit III At12D1_04000 PF02104 SURF1 family At12D1_04010 PF02401 LytB protein At12D1_04020 PF01636 Phosphotransferase enzyme family At12D1_04030 PF00075 RNase H At12D1_04050 PF08534 Redoxin At12D1_04050 PF00462 Glutaredoxin At12D1_04070 PF02622 Uncharacterized ACR, COG1678 At12D1_04080 PF05532 CsbD-like At12D1_04090 PF15887 Putative zinc-binding metallo-peptidase At12D1_04090 PF10005 zinc-ribbon domain At12D1_04100 PF00563 EAL domain At12D1_04100 PF13188 PAS domain At12D1_04100 PF00990 Diguanylate cyclase, GGDEF domain At12D1_04100 PF03707 Bacterial signalling protein N terminal repeat At12D1_04110 PF13302 Acetyltransferase (GNAT) domain At12D1_04120 PF00675 Insulinase (Peptidase family M16) At12D1_04120 PF05193 Peptidase M16 inactive domain At12D1_04130 PF00291 Pyridoxal-phosphate dependent enzyme At12D1_04130 PF14821 Threonine synthase N terminus At12D1_04170 PF13419 Haloacid dehalogenase-like hydrolase At12D1_04180 PF07729 FCD domain At12D1_04180 PF00392 Bacterial regulatory proteins, gntR family At12D1_04210 PF01555 DNA methylase At12D1_04210 PF18755 Restriction Enzyme Adenine Methylase Associated At12D1_04220 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH At12D1_04230 PF05016 ParE toxin of type II toxin-antitoxin system, parDE At12D1_04250 PF14815 NUDIX domain At12D1_04250 PF00730 HhH-GPD superfamily base excision DNA repair protein At12D1_04280 PF13462 Thioredoxin At12D1_04290 PF02463 RecF/RecN/SMC N terminal domain At12D1_04300 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily At12D1_04310 PF00391 PEP-utilising enzyme, mobile domain At12D1_04310 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain At12D1_04310 PF02896 PEP-utilising enzyme, TIM barrel domain At12D1_04400 PF01047 MarR family At12D1_04410 PF07690 Major Facilitator Superfamily At12D1_04420 PF07690 Major Facilitator Superfamily At12D1_04430 PF01965 DJ-1/PfpI family At12D1_04450 PF00132 Bacterial transferase hexapeptide (six repeats) At12D1_04460 PF07690 Major Facilitator Superfamily At12D1_04480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_04480 PF03466 LysR substrate binding domain At12D1_04570 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) At12D1_04570 PF06594 Haemolysin-type calcium binding protein related domain At12D1_04580 PF03412 Peptidase C39 family At12D1_04580 PF00005 ABC transporter At12D1_04580 PF00664 ABC transporter transmembrane region At12D1_04590 PF13533 Biotin-lipoyl like At12D1_04600 PF06412 Conjugal transfer protein TraD At12D1_04610 PF17841 BID domain of Bartonella effector protein (Bep) At12D1_04610 PF01443 Viral (Superfamily 1) RNA helicase At12D1_04610 PF03389 MobA/MobL family At12D1_04620 PF07693 KAP family P-loop domain At12D1_04730 PF06039 Malate:quinone oxidoreductase (Mqo) At12D1_04750 PF00009 Elongation factor Tu GTP binding domain At12D1_04760 PF01507 Phosphoadenosine phosphosulfate reductase family At12D1_04770 PF01507 Phosphoadenosine phosphosulfate reductase family At12D1_04780 PF02082 Transcriptional regulator At12D1_04800 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_04810 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_04820 PF00005 ABC transporter At12D1_04820 PF12857 TOBE-like domain At12D1_04830 PF00107 Zinc-binding dehydrogenase At12D1_04830 PF16197 Ketoacyl-synthetase C-terminal extension At12D1_04830 PF00698 Acyl transferase domain At12D1_04830 PF08659 KR domain At12D1_04830 PF02801 Beta-ketoacyl synthase, C-terminal domain At12D1_04830 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_04830 PF00109 Beta-ketoacyl synthase, N-terminal domain At12D1_04830 PF14765 Polyketide synthase dehydratase At12D1_04830 PF00550 Phosphopantetheine attachment site At12D1_04840 PF00563 EAL domain At12D1_04840 PF00989 PAS fold At12D1_04840 PF00990 Diguanylate cyclase, GGDEF domain At12D1_04840 PF01590 GAF domain At12D1_04860 PF13977 BetI-type transcriptional repressor, C-terminal At12D1_04860 PF00440 Bacterial regulatory proteins, tetR family At12D1_04870 PF00171 Aldehyde dehydrogenase family At12D1_04880 PF00732 GMC oxidoreductase At12D1_04880 PF05199 GMC oxidoreductase At12D1_04940 PF02798 Glutathione S-transferase, N-terminal domain At12D1_04940 PF00043 Glutathione S-transferase, C-terminal domain At12D1_04960 PF07690 Major Facilitator Superfamily At12D1_04980 PF05973 Phage derived protein Gp49-like (DUF891) At12D1_05000 PF04679 ATP dependent DNA ligase C terminal region At12D1_05000 PF04675 DNA ligase N terminus At12D1_05000 PF01068 ATP dependent DNA ligase domain At12D1_05020 PF04488 Glycosyltransferase sugar-binding region containing DXD motif At12D1_05030 PF00403 Heavy-metal-associated domain At12D1_05040 PF03734 L,D-transpeptidase catalytic domain At12D1_05040 PF17969 L,D-transpeptidase C-terminal domain At12D1_05050 PF03734 L,D-transpeptidase catalytic domain At12D1_05050 PF17969 L,D-transpeptidase C-terminal domain At12D1_05060 PF01047 MarR family At12D1_05070 PF02566 OsmC-like protein At12D1_05100 PF00005 ABC transporter At12D1_05100 PF12848 ABC transporter At12D1_05100 PF16326 ABC transporter C-terminal domain At12D1_05160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_05160 PF03466 LysR substrate binding domain At12D1_05170 PF00106 short chain dehydrogenase At12D1_05200 PF05872 Bacterial protein of unknown function (DUF853) At12D1_05220 PF01638 HxlR-like helix-turn-helix At12D1_05230 PF00106 short chain dehydrogenase At12D1_05240 PF12833 Helix-turn-helix domain At12D1_05260 PF00248 Aldo/keto reductase family At12D1_05270 PF01062 Bestrophin, RFP-TM, chloride channel At12D1_05280 PF13280 WYL domain At12D1_05280 PF08279 HTH domain At12D1_05310 PF01063 Amino-transferase class IV At12D1_05320 PF00672 HAMP domain At12D1_05320 PF02203 Tar ligand binding domain homologue At12D1_05320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_05360 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain At12D1_05360 PF02777 Iron/manganese superoxide dismutases, C-terminal domain At12D1_05390 PF01810 LysE type translocator At12D1_05400 PF01322 Cytochrome C' At12D1_05410 PF00034 Cytochrome c At12D1_05470 PF00376 MerR family regulatory protein At12D1_05470 PF09278 MerR, DNA binding At12D1_05490 PF02583 Metal-sensitive transcriptional repressor At12D1_05520 PF00571 CBS domain At12D1_05520 PF00005 ABC transporter At12D1_05530 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_05550 PF00326 Prolyl oligopeptidase family At12D1_05550 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain At12D1_05590 PF12833 Helix-turn-helix domain At12D1_05590 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain At12D1_05590 PF02805 Metal binding domain of Ada At12D1_05590 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain At12D1_05600 PF01594 AI-2E family transporter At12D1_05610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily At12D1_05640 PF03006 Haemolysin-III related At12D1_05660 PF01810 LysE type translocator At12D1_05670 PF01641 SelR domain At12D1_05690 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter At12D1_05700 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L At12D1_05730 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) At12D1_05740 PF03334 Na+/H+ antiporter subunit At12D1_05750 PF05443 ROS/MUCR transcriptional regulator protein At12D1_05780 PF02657 Fe-S metabolism associated domain At12D1_05790 PF17264 Family of unknown function (DUF5330) At12D1_05800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_05800 PF00512 His Kinase A (phospho-acceptor) domain At12D1_05910 PF00905 Penicillin binding protein transpeptidase domain At12D1_05910 PF00912 Transglycosylase At12D1_05920 PF03692 Putative zinc- or iron-chelating domain At12D1_05930 PF00905 Penicillin binding protein transpeptidase domain At12D1_05940 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ At12D1_05950 PF04221 RelB antitoxin At12D1_05960 PF00403 Heavy-metal-associated domain At12D1_05970 PF09278 MerR, DNA binding At12D1_05970 PF00376 MerR family regulatory protein At12D1_06020 PF07690 Major Facilitator Superfamily At12D1_06040 PF00251 Glycosyl hydrolases family 32 N-terminal domain At12D1_06040 PF08244 Glycosyl hydrolases family 32 C terminal At12D1_06050 PF02696 Uncharacterized ACR, YdiU/UPF0061 family At12D1_06070 PF13404 AsnC-type helix-turn-helix domain At12D1_06070 PF01037 Lrp/AsnC ligand binding domain At12D1_06160 PF04860 Phage portal protein At12D1_06340 PF00072 Response regulator receiver domain At12D1_06340 PF00486 Transcriptional regulatory protein, C terminal At12D1_06350 PF00512 His Kinase A (phospho-acceptor) domain At12D1_06350 PF00672 HAMP domain At12D1_06350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_06350 PF00989 PAS fold At12D1_06380 PF03100 CcmE At12D1_06390 PF01578 Cytochrome C assembly protein At12D1_06390 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal At12D1_06400 PF03918 Cytochrome C biogenesis protein At12D1_06410 PF13180 PDZ domain At12D1_06420 PF00072 Response regulator receiver domain At12D1_06420 PF00486 Transcriptional regulatory protein, C terminal At12D1_06430 PF00072 Response regulator receiver domain At12D1_06430 PF13426 PAS domain At12D1_06430 PF08448 PAS fold At12D1_06430 PF00512 His Kinase A (phospho-acceptor) domain At12D1_06430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_06440 PF04134 Protein of unknown function, DUF393 At12D1_06450 PF06629 MltA-interacting protein MipA At12D1_06460 PF08335 GlnD PII-uridylyltransferase At12D1_06460 PF03710 Glutamate-ammonia ligase adenylyltransferase At12D1_06470 PF00989 PAS fold At12D1_06470 PF00512 His Kinase A (phospho-acceptor) domain At12D1_06470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_06490 PF11940 Domain of unknown function (DUF3458) Ig-like fold At12D1_06490 PF01433 Peptidase family M1 domain At12D1_06490 PF17432 Domain of unknown function (DUF3458_C) ARM repeats At12D1_06510 PF13817 IS66 C-terminal element At12D1_06510 PF13005 zinc-finger binding domain of transposase IS66 At12D1_06510 PF13007 Transposase C of IS166 homeodomain At12D1_06510 PF03050 Transposase IS66 family At12D1_06520 PF05717 IS66 Orf2 like protein At12D1_06530 PF01527 Transposase At12D1_06550 PF00892 EamA-like transporter family At12D1_06580 PF00012 Hsp70 protein At12D1_06590 PF03707 Bacterial signalling protein N terminal repeat At12D1_06590 PF00563 EAL domain At12D1_06590 PF00990 Diguanylate cyclase, GGDEF domain At12D1_06650 PF00107 Zinc-binding dehydrogenase At12D1_06650 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_06660 PF01638 HxlR-like helix-turn-helix At12D1_06670 PF02673 Bacitracin resistance protein BacA At12D1_06680 PF00571 CBS domain At12D1_06680 PF01769 Divalent cation transporter At12D1_06680 PF03448 MgtE intracellular N domain At12D1_06690 PF07690 Major Facilitator Superfamily At12D1_06700 PF00781 Diacylglycerol kinase catalytic domain At12D1_06710 PF00202 Aminotransferase class-III At12D1_06730 PF09957 Bacterial antitoxin of type II TA system, VapB At12D1_06740 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus At12D1_06740 PF01048 Phosphorylase superfamily At12D1_06800 PF00155 Aminotransferase class I and II At12D1_06820 PF14759 Reductase C-terminal At12D1_06820 PF07992 Pyridine nucleotide-disulphide oxidoreductase At12D1_06830 PF03328 HpcH/HpaI aldolase/citrate lyase family At12D1_06870 PF02530 Porin subfamily At12D1_06880 PF02530 Porin subfamily At12D1_06890 PF01464 Transglycosylase SLT domain At12D1_06890 PF14718 Soluble lytic murein transglycosylase L domain At12D1_06900 PF00701 Dihydrodipicolinate synthetase family At12D1_06910 PF01668 SmpB protein At12D1_06920 PF02203 Tar ligand binding domain homologue At12D1_06920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_06920 PF00672 HAMP domain At12D1_06940 PF01192 RNA polymerase Rpb6 At12D1_06950 PF13291 ACT domain At12D1_06950 PF04607 Region found in RelA / SpoT proteins At12D1_06950 PF02824 TGS domain At12D1_06980 PF01648 4'-phosphopantetheinyl transferase superfamily At12D1_06990 PF10502 Signal peptidase, peptidase S26 At12D1_07000 PF14622 Ribonuclease-III-like At12D1_07000 PF00035 Double-stranded RNA binding motif At12D1_07010 PF07650 KH domain At12D1_07010 PF01926 50S ribosome-binding GTPase At12D1_07030 PF00072 Response regulator receiver domain At12D1_07040 PF02565 Recombination protein O C terminal At12D1_07040 PF11967 Recombination protein O N terminal At12D1_07050 PF07690 Major Facilitator Superfamily At12D1_07060 PF08241 Methyltransferase domain At12D1_07080 PF01966 HD domain At12D1_07100 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily At12D1_07120 PF00005 ABC transporter At12D1_07130 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_07140 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment At12D1_07150 PF00924 Mechanosensitive ion channel At12D1_07150 PF05552 Conserved TM helix At12D1_07170 PF01966 HD domain At12D1_07180 PF01571 Aminomethyltransferase folate-binding domain At12D1_07220 PF00293 NUDIX domain At12D1_07230 PF02694 Uncharacterised BCR, YnfA/UPF0060 family At12D1_07250 PF00990 Diguanylate cyclase, GGDEF domain At12D1_07250 PF00072 Response regulator receiver domain At12D1_07270 PF01066 CDP-alcohol phosphatidyltransferase At12D1_07280 PF02666 Phosphatidylserine decarboxylase At12D1_07290 PF00664 ABC transporter transmembrane region At12D1_07290 PF00005 ABC transporter At12D1_07310 PF03641 Possible lysine decarboxylase At12D1_07320 PF00905 Penicillin binding protein transpeptidase domain At12D1_07320 PF03717 Penicillin-binding Protein dimerisation domain At12D1_07330 PF00892 EamA-like transporter family At12D1_07340 PF00561 alpha/beta hydrolase fold At12D1_07370 PF04480 Protein of unknown function (DUF559) At12D1_07380 PF01406 tRNA synthetases class I (C) catalytic domain At12D1_07380 PF09190 DALR domain At12D1_07390 PF00106 short chain dehydrogenase At12D1_07400 PF00156 Phosphoribosyl transferase domain At12D1_07400 PF13537 Glutamine amidotransferase domain At12D1_07410 PF02674 Colicin V production protein At12D1_07420 PF06745 KaiC At12D1_07420 PF18073 Rubredoxin metal binding domain At12D1_07450 PF01168 Alanine racemase, N-terminal domain At12D1_07450 PF00842 Alanine racemase, C-terminal domain At12D1_07460 PF12833 Helix-turn-helix domain At12D1_07460 PF12852 Cupin At12D1_07470 PF03591 AzlC protein At12D1_07490 PF00772 DnaB-like helicase N terminal domain At12D1_07490 PF03796 DnaB-like helicase C terminal domain At12D1_07520 PF13533 Biotin-lipoyl like At12D1_07530 PF03948 Ribosomal protein L9, C-terminal domain At12D1_07530 PF01281 Ribosomal protein L9, N-terminal domain At12D1_07550 PF01084 Ribosomal protein S18 At12D1_07560 PF01250 Ribosomal protein S6 At12D1_07580 PF00248 Aldo/keto reductase family At12D1_07590 PF00698 Acyl transferase domain At12D1_07610 PF00550 Phosphopantetheine attachment site At12D1_07620 PF00109 Beta-ketoacyl synthase, N-terminal domain At12D1_07620 PF02801 Beta-ketoacyl synthase, C-terminal domain At12D1_07640 PF02618 YceG-like family At12D1_07650 PF08340 Domain of unknown function (DUF1732) At12D1_07650 PF03755 YicC-like family, N-terminal region At12D1_07660 PF00625 Guanylate kinase At12D1_07690 PF00398 Ribosomal RNA adenine dimethylase At12D1_07700 PF04166 Pyridoxal phosphate biosynthetic protein PdxA At12D1_07720 PF03968 OstA-like protein At12D1_07720 PF04453 LPS transport system D At12D1_07750 PF02789 Cytosol aminopeptidase family, N-terminal domain At12D1_07750 PF00883 Cytosol aminopeptidase family, catalytic domain At12D1_07770 PF03707 Bacterial signalling protein N terminal repeat At12D1_07770 PF00563 EAL domain At12D1_07770 PF00990 Diguanylate cyclase, GGDEF domain At12D1_07780 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_07790 PF01590 GAF domain At12D1_07790 PF00990 Diguanylate cyclase, GGDEF domain At12D1_07790 PF00360 Phytochrome region At12D1_07790 PF00563 EAL domain At12D1_07800 PF00563 EAL domain At12D1_07800 PF03707 Bacterial signalling protein N terminal repeat At12D1_07800 PF00990 Diguanylate cyclase, GGDEF domain At12D1_07810 PF00512 His Kinase A (phospho-acceptor) domain At12D1_07810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_07810 PF00989 PAS fold At12D1_07820 PF00196 Bacterial regulatory proteins, luxR family At12D1_07820 PF00072 Response regulator receiver domain At12D1_07840 PF12848 ABC transporter At12D1_07840 PF00005 ABC transporter At12D1_07850 PF00990 Diguanylate cyclase, GGDEF domain At12D1_07850 PF17158 Membrane-associated sensor, integral membrane domain At12D1_07860 PF13417 Glutathione S-transferase, N-terminal domain At12D1_07870 PF00334 Nucleoside diphosphate kinase At12D1_07910 PF02391 MoaE protein At12D1_07930 PF01066 CDP-alcohol phosphatidyltransferase At12D1_07940 PF02151 UvrB/uvrC motif At12D1_07940 PF01541 GIY-YIG catalytic domain At12D1_07940 PF08459 UvrC Helix-hairpin-helix N-terminal At12D1_07960 PF13505 Outer membrane protein beta-barrel domain At12D1_07980 PF00445 Ribonuclease T2 family At12D1_08000 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ At12D1_08010 PF01568 Molydopterin dinucleotide binding domain At12D1_08010 PF00384 Molybdopterin oxidoreductase At12D1_08010 PF04879 Molybdopterin oxidoreductase Fe4S4 domain At12D1_08020 PF00293 NUDIX domain At12D1_08060 PF00551 Formyl transferase At12D1_08070 PF02769 AIR synthase related protein, C-terminal domain At12D1_08070 PF00586 AIR synthase related protein, N-terminal domain At12D1_08080 PF01209 ubiE/COQ5 methyltransferase family At12D1_08090 PF01594 AI-2E family transporter At12D1_08110 PF13089 Polyphosphate kinase N-terminal domain At12D1_08110 PF13090 Polyphosphate kinase C-terminal domain 2 At12D1_08110 PF02503 Polyphosphate kinase middle domain At12D1_08110 PF17941 Polyphosphate kinase C-terminal domain 1 At12D1_08120 PF02541 Ppx/GppA phosphatase family At12D1_08130 PF00132 Bacterial transferase hexapeptide (six repeats) At12D1_08170 PF00211 Adenylate and Guanylate cyclase catalytic domain At12D1_08190 PF00570 HRDC domain At12D1_08190 PF01612 3'-5' exonuclease At12D1_08200 PF07690 Major Facilitator Superfamily At12D1_08210 PF02938 GAD domain At12D1_08210 PF01336 OB-fold nucleic acid binding domain At12D1_08210 PF00152 tRNA synthetases class II (D, K and N) At12D1_08230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_08230 PF02203 Tar ligand binding domain homologue At12D1_08230 PF00672 HAMP domain At12D1_08240 PF00916 Sulfate permease family At12D1_08240 PF01740 STAS domain At12D1_08260 PF00521 DNA gyrase/topoisomerase IV, subunit A At12D1_08260 PF03989 DNA gyrase C-terminal domain, beta-propeller At12D1_08270 PF04377 Arginine-tRNA-protein transferase, C terminus At12D1_08270 PF04376 Arginine-tRNA-protein transferase, N terminus At12D1_08290 PF00490 Delta-aminolevulinic acid dehydratase At12D1_08330 PF00464 Serine hydroxymethyltransferase At12D1_08340 PF03477 ATP cone domain At12D1_08350 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region At12D1_08350 PF01872 RibD C-terminal domain At12D1_08360 PF00677 Lumazine binding domain At12D1_08370 PF01810 LysE type translocator At12D1_08380 PF00885 6,7-dimethyl-8-ribityllumazine synthase At12D1_08390 PF01029 NusB family At12D1_08400 PF07690 Major Facilitator Superfamily At12D1_08410 PF03030 Inorganic H+ pyrophosphatase At12D1_08450 PF02504 Fatty acid synthesis protein At12D1_08460 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III At12D1_08460 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal At12D1_08470 PF00216 Bacterial DNA-binding protein At12D1_08480 PF13411 MerR HTH family regulatory protein At12D1_08500 PF00403 Heavy-metal-associated domain At12D1_08510 PF00111 2Fe-2S iron-sulfur cluster binding domain At12D1_08510 PF00970 Oxidoreductase FAD-binding domain At12D1_08510 PF00175 Oxidoreductase NAD-binding domain At12D1_08520 PF00376 MerR family regulatory protein At12D1_08520 PF09278 MerR, DNA binding At12D1_08530 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_08540 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_08540 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_08550 PF00005 ABC transporter At12D1_08550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_08560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_08560 PF00005 ABC transporter At12D1_08570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_08590 PF02386 Cation transport protein At12D1_08600 PF00291 Pyridoxal-phosphate dependent enzyme At12D1_08600 PF00585 C-terminal regulatory domain of Threonine dehydratase At12D1_08620 PF00072 Response regulator receiver domain At12D1_08620 PF00990 Diguanylate cyclase, GGDEF domain At12D1_08630 PF02525 Flavodoxin-like fold At12D1_08640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_08640 PF03466 LysR substrate binding domain At12D1_08650 PF00149 Calcineurin-like phosphoesterase At12D1_08650 PF02872 5'-nucleotidase, C-terminal domain At12D1_08690 PF00581 Rhodanese-like domain At12D1_08700 PF02272 DHHA1 domain At12D1_08700 PF01411 tRNA synthetases class II (A) At12D1_08700 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain At12D1_08710 PF00571 CBS domain At12D1_08710 PF00291 Pyridoxal-phosphate dependent enzyme At12D1_08720 PF00875 DNA photolyase At12D1_08720 PF03441 FAD binding domain of DNA photolyase At12D1_08740 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain At12D1_08740 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain At12D1_08790 PF06055 Exopolysaccharide synthesis, ExoD At12D1_08810 PF09335 SNARE associated Golgi protein At12D1_08890 PF02397 Bacterial sugar transferase At12D1_08900 PF00534 Glycosyl transferases group 1 At12D1_08950 PF02628 Cytochrome oxidase assembly protein At12D1_08960 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase At12D1_08970 PF01118 Semialdehyde dehydrogenase, NAD binding domain At12D1_08980 PF00491 Arginase family At12D1_08990 PF00380 Ribosomal protein S9/S16 At12D1_09000 PF00572 Ribosomal protein L13 At12D1_09020 PF13380 CoA binding domain At12D1_09030 PF01053 Cys/Met metabolism PLP-dependent enzyme At12D1_09080 PF00067 Cytochrome P450 At12D1_09090 PF00990 Diguanylate cyclase, GGDEF domain At12D1_09100 PF00574 Clp protease At12D1_09110 PF07724 AAA domain (Cdc48 subfamily) At12D1_09110 PF10431 C-terminal, D2-small domain, of ClpB protein At12D1_09110 PF06689 ClpX C4-type zinc finger At12D1_09130 PF02190 ATP-dependent protease La (LON) substrate-binding domain At12D1_09130 PF00004 ATPase family associated with various cellular activities (AAA) At12D1_09130 PF05362 Lon protease (S16) C-terminal proteolytic domain At12D1_09140 PF00216 Bacterial DNA-binding protein At12D1_09150 PF04166 Pyridoxal phosphate biosynthetic protein PdxA At12D1_09160 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 At12D1_09170 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit At12D1_09180 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit At12D1_09200 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit At12D1_09230 PF10531 SLBB domain At12D1_09230 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region At12D1_09230 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit At12D1_09240 PF00384 Molybdopterin oxidoreductase At12D1_09240 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal At12D1_09240 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region At12D1_09250 PF00146 NADH dehydrogenase At12D1_09260 PF12838 4Fe-4S dicluster domain At12D1_09270 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 At12D1_09280 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L At12D1_09290 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus At12D1_09290 PF00361 Proton-conducting membrane transporter At12D1_09300 PF00361 Proton-conducting membrane transporter At12D1_09300 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus At12D1_09310 PF00361 Proton-conducting membrane transporter At12D1_09320 PF02237 Biotin protein ligase C terminal domain At12D1_09320 PF03099 Biotin/lipoate A/B protein ligase family At12D1_09320 PF08279 HTH domain At12D1_09330 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain At12D1_09330 PF17770 Ribonuclease J C-terminal domain At12D1_09330 PF12706 Beta-lactamase superfamily domain At12D1_09350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) At12D1_09350 PF03129 Anticodon binding domain At12D1_09360 PF12704 MacB-like periplasmic core domain At12D1_09360 PF02687 FtsX-like permease family At12D1_09370 PF00005 ABC transporter At12D1_09380 PF14579 Helix-hairpin-helix motif At12D1_09380 PF02811 PHP domain At12D1_09380 PF07733 Bacterial DNA polymerase III alpha NTPase domain At12D1_09380 PF17657 Bacterial DNA polymerase III alpha subunit finger domain At12D1_09400 PF00817 impB/mucB/samB family At12D1_09400 PF11799 impB/mucB/samB family C-terminal domain At12D1_09440 PF00072 Response regulator receiver domain At12D1_09450 PF00990 Diguanylate cyclase, GGDEF domain At12D1_09450 PF00072 Response regulator receiver domain At12D1_09460 PF00471 Ribosomal protein L33 At12D1_09470 PF07690 Major Facilitator Superfamily At12D1_09500 PF08206 Ribonuclease B OB domain At12D1_09500 PF17876 Cold shock domain At12D1_09500 PF08461 Ribonuclease R winged-helix domain At12D1_09500 PF00575 S1 RNA binding domain At12D1_09500 PF00773 RNB domain At12D1_09510 PF01751 Toprim domain At12D1_09510 PF01396 Topoisomerase DNA binding C4 zinc finger At12D1_09510 PF01131 DNA topoisomerase At12D1_09510 PF13368 Topoisomerase C-terminal repeat At12D1_09530 PF02481 DNA recombination-mediator protein A At12D1_09530 PF17782 DprA winged helix domain At12D1_09540 PF02660 Glycerol-3-phosphate acyltransferase At12D1_09550 PF01979 Amidohydrolase family At12D1_09560 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain At12D1_09560 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain At12D1_09590 PF18158 Adaptive response protein AidB N-terminal domain At12D1_09590 PF02770 Acyl-CoA dehydrogenase, middle domain At12D1_09590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain At12D1_09600 PF00583 Acetyltransferase (GNAT) family At12D1_09640 PF03652 Holliday junction resolvase At12D1_09650 PF03831 PhnA domain At12D1_09650 PF08274 PhnA Zinc-Ribbon At12D1_09670 PF02686 Glu-tRNAGln amidotransferase C subunit At12D1_09680 PF01425 Amidase At12D1_09690 PF13673 Acetyltransferase (GNAT) domain At12D1_09690 PF00583 Acetyltransferase (GNAT) family At12D1_09700 PF09857 Putative toxin of bacterial toxin-antitoxin pair At12D1_09730 PF02637 GatB domain At12D1_09730 PF02934 GatB/GatE catalytic domain At12D1_09750 PF00583 Acetyltransferase (GNAT) family At12D1_09790 PF03588 Leucyl/phenylalanyl-tRNA protein transferase At12D1_09800 PF02785 Biotin carboxylase C-terminal domain At12D1_09800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain At12D1_09800 PF00289 Biotin carboxylase, N-terminal domain At12D1_09810 PF00364 Biotin-requiring enzyme At12D1_09820 PF01220 Dehydroquinase class II At12D1_09840 PF00155 Aminotransferase class I and II At12D1_09890 PF10150 Ribonuclease E/G family At12D1_09890 PF00575 S1 RNA binding domain At12D1_09890 PF12111 Polyribonucleotide phosphorylase C terminal At12D1_09900 PF01520 N-acetylmuramoyl-L-alanine amidase At12D1_09910 PF00905 Penicillin binding protein transpeptidase domain At12D1_09910 PF00912 Transglycosylase At12D1_09910 PF17092 Penicillin-binding protein OB-like domain At12D1_09920 PF03462 PCRF domain At12D1_09920 PF00472 RF-1 domain At12D1_09950 PF01513 ATP-NAD kinase At12D1_09960 PF02567 Phenazine biosynthesis-like protein At12D1_09970 PF03764 Elongation factor G, domain IV At12D1_09970 PF00679 Elongation factor G C-terminus At12D1_09970 PF00009 Elongation factor Tu GTP binding domain At12D1_10010 PF00111 2Fe-2S iron-sulfur cluster binding domain At12D1_10030 PF00809 Pterin binding enzyme At12D1_10040 PF02152 Dihydroneopterin aldolase At12D1_10050 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) At12D1_10070 PF05128 Domain of unknown function (DUF697) At12D1_10080 PF04317 YcjX-like family, DUF463 At12D1_10100 PF01258 Prokaryotic dksA/traR C4-type zinc finger At12D1_10130 PF08448 PAS fold At12D1_10130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_10130 PF13188 PAS domain At12D1_10130 PF00512 His Kinase A (phospho-acceptor) domain At12D1_10130 PF00072 Response regulator receiver domain At12D1_10140 PF02617 ATP-dependent Clp protease adaptor protein ClpS At12D1_10150 PF07724 AAA domain (Cdc48 subfamily) At12D1_10150 PF17871 AAA lid domain At12D1_10150 PF02861 Clp amino terminal domain, pathogenicity island component At12D1_10150 PF00004 ATPase family associated with various cellular activities (AAA) At12D1_10150 PF10431 C-terminal, D2-small domain, of ClpB protein At12D1_10190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_10190 PF03466 LysR substrate binding domain At12D1_10210 PF01230 HIT domain At12D1_10260 PF00318 Ribosomal protein S2 At12D1_10270 PF00889 Elongation factor TS At12D1_10280 PF00696 Amino acid kinase family At12D1_10290 PF01765 Ribosome recycling factor At12D1_10300 PF01255 Putative undecaprenyl diphosphate synthase At12D1_10320 PF17820 PDZ domain At12D1_10320 PF02163 Peptidase family M50 At12D1_10330 PF07244 Surface antigen variable number repeat At12D1_10330 PF01103 Surface antigen At12D1_10340 PF00132 Bacterial transferase hexapeptide (six repeats) At12D1_10340 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD At12D1_10350 PF07977 FabA-like domain At12D1_10360 PF00132 Bacterial transferase hexapeptide (six repeats) At12D1_10360 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 At12D1_10370 PF17930 LpxI N-terminal domain At12D1_10370 PF06230 LpxI C-terminal domain At12D1_10380 PF02684 Lipid-A-disaccharide synthetase At12D1_10390 PF00392 Bacterial regulatory proteins, gntR family At12D1_10390 PF07729 FCD domain At12D1_10400 PF00497 Bacterial extracellular solute-binding proteins, family 3 At12D1_10410 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_10430 PF00005 ABC transporter At12D1_10440 PF00285 Citrate synthase, C-terminal domain At12D1_10470 PF00717 Peptidase S24-like At12D1_10470 PF01726 LexA DNA binding domain At12D1_10490 PF00793 DAHP synthetase I family At12D1_10500 PF03952 Enolase, N-terminal domain At12D1_10500 PF00113 Enolase, C-terminal TIM barrel domain At12D1_10520 PF00676 Dehydrogenase E1 component At12D1_10530 PF02780 Transketolase, C-terminal domain At12D1_10530 PF02779 Transketolase, pyrimidine binding domain At12D1_10530 PF00364 Biotin-requiring enzyme At12D1_10540 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) At12D1_10540 PF02817 e3 binding domain At12D1_10540 PF00364 Biotin-requiring enzyme At12D1_10560 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain At12D1_10560 PF07992 Pyridine nucleotide-disulphide oxidoreductase At12D1_10580 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family At12D1_10580 PF04055 Radical SAM superfamily At12D1_10590 PF00892 EamA-like transporter family At12D1_10630 PF03364 Polyketide cyclase / dehydrase and lipid transport At12D1_10640 PF02464 Competence-damaged protein At12D1_10640 PF00994 Probable molybdopterin binding domain At12D1_10640 PF18146 Damage-inducible protein CinA KH domain At12D1_10650 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase At12D1_10650 PF02542 YgbB family At12D1_10660 PF01207 Dihydrouridine synthase (Dus) At12D1_10670 PF00989 PAS fold At12D1_10670 PF00512 His Kinase A (phospho-acceptor) domain At12D1_10670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_10680 PF02954 Bacterial regulatory protein, Fis family At12D1_10680 PF00158 Sigma-54 interaction domain At12D1_10680 PF00072 Response regulator receiver domain At12D1_10690 PF00672 HAMP domain At12D1_10690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_10690 PF00512 His Kinase A (phospho-acceptor) domain At12D1_10690 PF00989 PAS fold At12D1_10700 PF00158 Sigma-54 interaction domain At12D1_10700 PF02954 Bacterial regulatory protein, Fis family At12D1_10700 PF00072 Response regulator receiver domain At12D1_10710 PF02080 TrkA-C domain At12D1_10710 PF02254 TrkA-N domain At12D1_10720 PF17209 Hfq protein At12D1_10730 PF16360 GTP-binding GTPase Middle Region At12D1_10730 PF13167 GTP-binding GTPase N-terminal At12D1_10730 PF01926 50S ribosome-binding GTPase At12D1_10740 PF03819 MazG nucleotide pyrophosphohydrolase domain At12D1_10760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases At12D1_10760 PF14824 Sirohaem biosynthesis protein central At12D1_10760 PF10414 Sirohaem synthase dimerisation region At12D1_10800 PF00175 Oxidoreductase NAD-binding domain At12D1_10800 PF00970 Oxidoreductase FAD-binding domain At12D1_10810 PF07690 Major Facilitator Superfamily At12D1_10840 PF02347 Glycine cleavage system P-protein At12D1_10850 PF01597 Glycine cleavage H-protein At12D1_10860 PF08669 Glycine cleavage T-protein C-terminal barrel domain At12D1_10860 PF01571 Aminomethyltransferase folate-binding domain At12D1_10910 PF02537 CrcB-like protein, Camphor Resistance (CrcB) At12D1_10920 PF00849 RNA pseudouridylate synthase At12D1_10920 PF01479 S4 domain At12D1_10930 PF13419 Haloacid dehalogenase-like hydrolase At12D1_10960 PF01042 Endoribonuclease L-PSP At12D1_10970 PF00756 Putative esterase At12D1_10990 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 At12D1_11020 PF00578 AhpC/TSA family At12D1_11020 PF10417 C-terminal domain of 1-Cys peroxiredoxin At12D1_11030 PF00043 Glutathione S-transferase, C-terminal domain At12D1_11030 PF02798 Glutathione S-transferase, N-terminal domain At12D1_11060 PF03358 NADPH-dependent FMN reductase At12D1_11070 PF03960 ArsC family At12D1_11080 PF01758 Sodium Bile acid symporter family At12D1_11090 PF01451 Low molecular weight phosphotyrosine protein phosphatase At12D1_11110 PF00654 Voltage gated chloride channel At12D1_11120 PF12706 Beta-lactamase superfamily domain At12D1_11120 PF03099 Biotin/lipoate A/B protein ligase family At12D1_11130 PF01026 TatD related DNase At12D1_11140 PF08264 Anticodon-binding domain of tRNA At12D1_11140 PF09334 tRNA synthetases class I (M) At12D1_11150 PF09115 DNA polymerase III, delta subunit, C terminal At12D1_11160 PF02223 Thymidylate kinase At12D1_11170 PF00768 D-alanyl-D-alanine carboxypeptidase At12D1_11170 PF07943 Penicillin-binding protein 5, C-terminal domain At12D1_11180 PF05036 Sporulation related domain At12D1_11180 PF03330 Lytic transglycolase At12D1_11260 PF00521 DNA gyrase/topoisomerase IV, subunit A At12D1_11260 PF03989 DNA gyrase C-terminal domain, beta-propeller At12D1_11270 PF01914 MarC family integral membrane protein At12D1_11280 PF03448 MgtE intracellular N domain At12D1_11280 PF01769 Divalent cation transporter At12D1_11280 PF00571 CBS domain At12D1_11300 PF00436 Single-strand binding protein family At12D1_11310 PF17760 UvrA interaction domain At12D1_11310 PF17755 UvrA DNA-binding domain At12D1_11330 PF01207 Dihydrouridine synthase (Dus) At12D1_11340 PF01557 Fumarylacetoacetate (FAA) hydrolase family At12D1_11350 PF00132 Bacterial transferase hexapeptide (six repeats) At12D1_11370 PF00950 ABC 3 transport family At12D1_11380 PF00005 ABC transporter At12D1_11390 PF01297 Zinc-uptake complex component A periplasmic At12D1_11400 PF00356 Bacterial regulatory proteins, lacI family At12D1_11420 PF00248 Aldo/keto reductase family At12D1_11450 PF13332 Hemagglutinin repeat At12D1_11450 PF05860 haemagglutination activity domain At12D1_11450 PF04829 Pre-toxin domain with VENN motif At12D1_11470 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB At12D1_11470 PF17287 POTRA domain At12D1_11470 PF08479 POTRA domain, ShlB-type At12D1_11550 PF17841 BID domain of Bartonella effector protein (Bep) At12D1_11550 PF03389 MobA/MobL family At12D1_11550 PF01443 Viral (Superfamily 1) RNA helicase At12D1_11570 PF01381 Helix-turn-helix At12D1_11660 PF01757 Acyltransferase family At12D1_11720 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain At12D1_11720 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase At12D1_11730 PF03597 Cytochrome oxidase maturation protein cbb3-type At12D1_11750 PF05751 FixH At12D1_11760 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase At12D1_11760 PF12801 4Fe-4S binding domain At12D1_11760 PF13746 4Fe-4S dicluster domain At12D1_11800 PF13442 Cytochrome C oxidase, cbb3-type, subunit III At12D1_11800 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP At12D1_11830 PF00115 Cytochrome C and Quinol oxidase polypeptide I At12D1_11840 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase At12D1_11870 PF00376 MerR family regulatory protein At12D1_11870 PF09278 MerR, DNA binding At12D1_11880 PF01769 Divalent cation transporter At12D1_11880 PF00571 CBS domain At12D1_11880 PF03448 MgtE intracellular N domain At12D1_11890 PF00384 Molybdopterin oxidoreductase At12D1_11910 PF01327 Polypeptide deformylase At12D1_11940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_11940 PF00512 His Kinase A (phospho-acceptor) domain At12D1_11940 PF00989 PAS fold At12D1_11960 PF03099 Biotin/lipoate A/B protein ligase family At12D1_11970 PF00107 Zinc-binding dehydrogenase At12D1_11970 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_12020 PF02355 Protein export membrane protein At12D1_12020 PF07549 SecD/SecF GG Motif At12D1_12030 PF02699 Preprotein translocase subunit At12D1_12050 PF01262 Alanine dehydrogenase/PNT, C-terminal domain At12D1_12050 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_12060 PF00440 Bacterial regulatory proteins, tetR family At12D1_12060 PF08360 QacR-like protein, C-terminal region At12D1_12070 PF00067 Cytochrome P450 At12D1_12090 PF00132 Bacterial transferase hexapeptide (six repeats) At12D1_12090 PF06426 Serine acetyltransferase, N-terminal At12D1_12100 PF00561 alpha/beta hydrolase fold At12D1_12120 PF01494 FAD binding domain At12D1_12130 PF01053 Cys/Met metabolism PLP-dependent enzyme At12D1_12140 PF00497 Bacterial extracellular solute-binding proteins, family 3 At12D1_12150 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_12160 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_12170 PF00005 ABC transporter At12D1_12180 PF17768 RecJ OB domain At12D1_12180 PF02272 DHHA1 domain At12D1_12180 PF01368 DHH family At12D1_12200 PF03447 Homoserine dehydrogenase, NAD binding domain At12D1_12200 PF01842 ACT domain At12D1_12200 PF00742 Homoserine dehydrogenase At12D1_12210 PF00155 Aminotransferase class I and II At12D1_12220 PF01156 Inosine-uridine preferring nucleoside hydrolase At12D1_12230 PF01925 Sulfite exporter TauE/SafE At12D1_12260 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_12260 PF00107 Zinc-binding dehydrogenase At12D1_12270 PF02801 Beta-ketoacyl synthase, C-terminal domain At12D1_12270 PF00109 Beta-ketoacyl synthase, N-terminal domain At12D1_12290 PF07977 FabA-like domain At12D1_12300 PF00550 Phosphopantetheine attachment site At12D1_12310 PF04055 Radical SAM superfamily At12D1_12320 PF13545 Crp-like helix-turn-helix domain At12D1_12320 PF00027 Cyclic nucleotide-binding domain At12D1_12340 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus At12D1_12350 PF17746 SfsA N-terminal OB domain At12D1_12350 PF03749 Sugar fermentation stimulation protein RE domain At12D1_12360 PF00557 Metallopeptidase family M24 At12D1_12370 PF04002 RadC-like JAB domain At12D1_12400 PF01474 Class-II DAHP synthetase family At12D1_12430 PF07992 Pyridine nucleotide-disulphide oxidoreductase At12D1_12430 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain At12D1_12450 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) At12D1_12460 PF13419 Haloacid dehalogenase-like hydrolase At12D1_12480 PF00206 Lyase At12D1_12480 PF10415 Fumarase C C-terminus At12D1_12500 PF00117 Glutamine amidotransferase class-I At12D1_12500 PF06418 CTP synthase N-terminus At12D1_12510 PF03840 Preprotein translocase SecG subunit At12D1_12520 PF00121 Triosephosphate isomerase At12D1_12540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_12540 PF00986 DNA gyrase B subunit, carboxyl terminus At12D1_12540 PF00204 DNA gyrase B At12D1_12540 PF01751 Toprim domain At12D1_12550 PF01370 NAD dependent epimerase/dehydratase family At12D1_12560 PF00574 Clp protease At12D1_12580 PF01022 Bacterial regulatory protein, arsR family At12D1_12590 PF13091 PLD-like domain At12D1_12610 PF16350 FAD dependent oxidoreductase central domain At12D1_12610 PF01571 Aminomethyltransferase folate-binding domain At12D1_12610 PF08669 Glycine cleavage T-protein C-terminal barrel domain At12D1_12610 PF01266 FAD dependent oxidoreductase At12D1_12650 PF12794 Mechanosensitive ion channel inner membrane domain 1 At12D1_12650 PF00924 Mechanosensitive ion channel At12D1_12650 PF12795 Mechanosensitive ion channel porin domain At12D1_12770 PF00005 ABC transporter At12D1_12780 PF02405 Permease MlaE At12D1_12790 PF13378 Enolase C-terminal domain-like At12D1_12790 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain At12D1_12810 PF00390 Malic enzyme, N-terminal domain At12D1_12810 PF03949 Malic enzyme, NAD binding domain At12D1_12810 PF01515 Phosphate acetyl/butaryl transferase At12D1_12830 PF00881 Nitroreductase family At12D1_12840 PF07676 WD40-like Beta Propeller Repeat At12D1_12860 PF00795 Carbon-nitrogen hydrolase At12D1_12860 PF02540 NAD synthase At12D1_12870 PF00884 Sulfatase At12D1_12890 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain At12D1_12890 PF07992 Pyridine nucleotide-disulphide oxidoreductase At12D1_12920 PF05697 Bacterial trigger factor protein (TF) At12D1_12920 PF05698 Bacterial trigger factor protein (TF) C-terminus At12D1_12920 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase At12D1_12950 PF01134 Glucose inhibited division protein A At12D1_12990 PF00107 Zinc-binding dehydrogenase At12D1_12990 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_13010 PF00550 Phosphopantetheine attachment site At12D1_13020 PF13193 AMP-binding enzyme C-terminal domain At12D1_13020 PF00501 AMP-binding enzyme At12D1_13030 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain At12D1_13030 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain At12D1_13040 PF00425 chorismate binding enzyme At12D1_13040 PF04715 Anthranilate synthase component I, N terminal region At12D1_13040 PF00117 Glutamine amidotransferase class-I At12D1_13050 PF01702 Queuine tRNA-ribosyltransferase At12D1_13060 PF02547 Queuosine biosynthesis protein At12D1_13070 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD At12D1_13080 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD At12D1_13090 PF01467 Cytidylyltransferase-like At12D1_13130 PF00591 Glycosyl transferase family, a/b domain At12D1_13130 PF02885 Glycosyl transferase family, helical bundle domain At12D1_13140 PF00218 Indole-3-glycerol phosphate synthase At12D1_13150 PF01967 MoaC family At12D1_13160 PF03453 MoeA N-terminal region (domain I and II) At12D1_13160 PF00994 Probable molybdopterin binding domain At12D1_13160 PF03454 MoeA C-terminal region (domain IV) At12D1_13170 PF17158 Membrane-associated sensor, integral membrane domain At12D1_13170 PF00990 Diguanylate cyclase, GGDEF domain At12D1_13190 PF00999 Sodium/hydrogen exchanger family At12D1_13190 PF02254 TrkA-N domain At12D1_13210 PF04055 Radical SAM superfamily At12D1_13210 PF06463 Molybdenum Cofactor Synthesis C At12D1_13230 PF07690 Major Facilitator Superfamily At12D1_13240 PF12804 MobA-like NTP transferase domain At12D1_13250 PF03205 Molybdopterin guanine dinucleotide synthesis protein B At12D1_13260 PF01551 Peptidase family M23 At12D1_13280 PF01975 Survival protein SurE At12D1_13290 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) At12D1_13290 PF02403 Seryl-tRNA synthetase N-terminal domain At12D1_13300 PF00902 Sec-independent protein translocase protein (TatC) At12D1_13310 PF02416 mttA/Hcf106 family At12D1_13320 PF02416 mttA/Hcf106 family At12D1_13330 PF04079 Segregation and condensation complex subunit ScpB At12D1_13340 PF02616 Segregation and condensation protein ScpA At12D1_13350 PF00933 Glycosyl hydrolase family 3 N terminal domain At12D1_13370 PF05746 DALR anticodon binding domain At12D1_13370 PF03485 Arginyl tRNA synthetase N terminal domain At12D1_13370 PF00750 tRNA synthetases class I (R) At12D1_13380 PF01966 HD domain At12D1_13380 PF13286 Phosphohydrolase-associated domain At12D1_13390 PF01521 Iron-sulphur cluster biosynthesis At12D1_13410 PF08238 Sel1 repeat At12D1_13430 PF08264 Anticodon-binding domain of tRNA At12D1_13430 PF00133 tRNA synthetases class I (I, L, M and V) At12D1_13430 PF10458 Valyl tRNA synthetase tRNA binding arm At12D1_13540 PF03358 NADPH-dependent FMN reductase At12D1_13550 PF00994 Probable molybdopterin binding domain At12D1_13550 PF02464 Competence-damaged protein At12D1_13550 PF18146 Damage-inducible protein CinA KH domain At12D1_13560 PF00582 Universal stress protein family At12D1_13570 PF00156 Phosphoribosyl transferase domain At12D1_13580 PF02867 Ribonucleotide reductase, barrel domain At12D1_13580 PF08471 Class II vitamin B12-dependent ribonucleotide reductase At12D1_13630 PF10137 Predicted nucleotide-binding protein containing TIR-like domain At12D1_13670 PF13289 SIR2-like domain At12D1_13700 PF13683 Integrase core domain At12D1_13700 PF13276 HTH-like domain At12D1_13710 PF01527 Transposase At12D1_13720 PF17862 AAA+ lid domain At12D1_13720 PF00004 ATPase family associated with various cellular activities (AAA) At12D1_13720 PF01434 Peptidase family M41 At12D1_13810 PF01566 Natural resistance-associated macrophage protein At12D1_13830 PF00005 ABC transporter At12D1_13830 PF00664 ABC transporter transmembrane region At12D1_13840 PF01594 AI-2E family transporter At12D1_13850 PF00583 Acetyltransferase (GNAT) family At12D1_13910 PF03129 Anticodon binding domain At12D1_13910 PF02824 TGS domain At12D1_13910 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain At12D1_13910 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) At12D1_13930 PF01809 Putative membrane protein insertion efficiency factor At12D1_13950 PF01227 GTP cyclohydrolase I At12D1_13960 PF01502 Phosphoribosyl-AMP cyclohydrolase At12D1_13970 PF01734 Patatin-like phospholipase At12D1_13990 PF00478 IMP dehydrogenase / GMP reductase domain At12D1_13990 PF00571 CBS domain At12D1_14050 PF03315 Serine dehydratase beta chain At12D1_14050 PF03313 Serine dehydratase alpha chain At12D1_14120 PF03466 LysR substrate binding domain At12D1_14120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_14140 PF12833 Helix-turn-helix domain At12D1_14140 PF01965 DJ-1/PfpI family At12D1_14150 PF01256 Carbohydrate kinase At12D1_14150 PF03853 YjeF-related protein N-terminus At12D1_14160 PF00543 Nitrogen regulatory protein P-II At12D1_14170 PF00120 Glutamine synthetase, catalytic domain At12D1_14170 PF03951 Glutamine synthetase, beta-Grasp domain At12D1_14190 PF01609 Transposase DDE domain At12D1_14200 PF13340 Putative transposase of IS4/5 family (DUF4096) At12D1_14210 PF08755 Hemimethylated DNA-binding protein YccV like At12D1_14230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_14250 PF00892 EamA-like transporter family At12D1_14270 PF00271 Helicase conserved C-terminal domain At12D1_14270 PF03461 TRCF domain At12D1_14270 PF00270 DEAD/DEAH box helicase At12D1_14270 PF02559 CarD-like/TRCF domain At12D1_14270 PF17757 UvrB interaction domain At12D1_14290 PF00270 DEAD/DEAH box helicase At12D1_14290 PF00271 Helicase conserved C-terminal domain At12D1_14290 PF17191 RecG wedge domain At12D1_14320 PF01850 PIN domain At12D1_14350 PF01380 SIS domain At12D1_14360 PF14602 Hexapeptide repeat of succinyl-transferase At12D1_14360 PF00132 Bacterial transferase hexapeptide (six repeats) At12D1_14360 PF12804 MobA-like NTP transferase domain At12D1_14370 PF07729 FCD domain At12D1_14370 PF00392 Bacterial regulatory proteins, gntR family At12D1_14380 PF02608 ABC transporter substrate-binding protein PnrA-like At12D1_14410 PF00005 ABC transporter At12D1_14430 PF01494 FAD binding domain At12D1_14440 PF03547 Membrane transport protein At12D1_14450 PF02683 Cytochrome C biogenesis protein transmembrane region At12D1_14480 PF00313 'Cold-shock' DNA-binding domain At12D1_14570 PF12704 MacB-like periplasmic core domain At12D1_14570 PF00005 ABC transporter At12D1_14570 PF02687 FtsX-like permease family At12D1_14580 PF00005 ABC transporter At12D1_14580 PF12704 MacB-like periplasmic core domain At12D1_14580 PF02687 FtsX-like permease family At12D1_14620 PF01521 Iron-sulphur cluster biosynthesis At12D1_14630 PF01883 Iron-sulfur cluster assembly protein At12D1_14640 PF00266 Aminotransferase class-V At12D1_14650 PF01458 Uncharacterized protein family (UPF0051) At12D1_14660 PF00005 ABC transporter At12D1_14670 PF01458 Uncharacterized protein family (UPF0051) At12D1_14680 PF00266 Aminotransferase class-V At12D1_14690 PF02129 X-Pro dipeptidyl-peptidase (S15 family) At12D1_14700 PF03702 Anhydro-N-acetylmuramic acid kinase At12D1_14710 PF00579 tRNA synthetases class I (W and Y) At12D1_14730 PF00578 AhpC/TSA family At12D1_14740 PF04305 Protein of unknown function (DUF455) At12D1_14750 PF01476 LysM domain At12D1_14750 PF08525 Opacity-associated protein A N-terminal motif At12D1_14750 PF01551 Peptidase family M23 At12D1_14760 PF00270 DEAD/DEAH box helicase At12D1_14760 PF00271 Helicase conserved C-terminal domain At12D1_14790 PF00834 Ribulose-phosphate 3 epimerase family At12D1_14810 PF00206 Lyase At12D1_14810 PF10397 Adenylosuccinate lyase C-terminus At12D1_14830 PF01259 SAICAR synthetase At12D1_14840 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase At12D1_14880 PF00392 Bacterial regulatory proteins, gntR family At12D1_14880 PF00155 Aminotransferase class I and II At12D1_14890 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain At12D1_14890 PF00586 AIR synthase related protein, N-terminal domain At12D1_14890 PF02769 AIR synthase related protein, C-terminal domain At12D1_14940 PF00462 Glutaredoxin At12D1_14950 PF07690 Major Facilitator Superfamily At12D1_14960 PF00459 Inositol monophosphatase family At12D1_14970 PF00459 Inositol monophosphatase family At12D1_14980 PF01171 PP-loop family At12D1_14990 PF04960 Glutaminase At12D1_15000 PF00163 Ribosomal protein S4/S9 N-terminal domain At12D1_15000 PF01479 S4 domain At12D1_15010 PF03741 Integral membrane protein TerC family At12D1_15030 PF00892 EamA-like transporter family At12D1_15040 PF01810 LysE type translocator At12D1_15070 PF01177 Asp/Glu/Hydantoin racemase At12D1_15080 PF00588 SpoU rRNA Methylase family At12D1_15100 PF00180 Isocitrate/isopropylmalate dehydrogenase At12D1_15120 PF01411 tRNA synthetases class II (A) At12D1_15120 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain At12D1_15120 PF02272 DHHA1 domain At12D1_15130 PF00154 recA bacterial DNA recombination protein At12D1_15140 PF00294 pfkB family carbohydrate kinase At12D1_15150 PF04227 Indigoidine synthase A like protein At12D1_15160 PF01389 OmpA-like transmembrane domain At12D1_15160 PF00691 OmpA family At12D1_15170 PF00497 Bacterial extracellular solute-binding proteins, family 3 At12D1_15180 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_15190 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_15200 PF06233 Usg-like family At12D1_15220 PF09084 NMT1/THI5 like At12D1_15230 PF13404 AsnC-type helix-turn-helix domain At12D1_15230 PF01037 Lrp/AsnC ligand binding domain At12D1_15240 PF03167 Uracil DNA glycosylase superfamily At12D1_15260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_15260 PF00512 His Kinase A (phospho-acceptor) domain At12D1_15260 PF00989 PAS fold At12D1_15270 PF01219 Prokaryotic diacylglycerol kinase At12D1_15280 PF02277 Phosphoribosyltransferase At12D1_15290 PF02654 Cobalamin-5-phosphate synthase At12D1_15320 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase At12D1_15330 PF01061 ABC-2 type transporter At12D1_15340 PF00005 ABC transporter At12D1_15380 PF00672 HAMP domain At12D1_15380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_15380 PF17200 Single Cache domain 2 At12D1_15400 PF00004 ATPase family associated with various cellular activities (AAA) At12D1_15400 PF12002 MgsA AAA+ ATPase C terminal At12D1_15400 PF16193 AAA C-terminal domain At12D1_15410 PF00595 PDZ domain At12D1_15410 PF13180 PDZ domain At12D1_15450 PF00920 Dehydratase family At12D1_15460 PF00174 Oxidoreductase molybdopterin binding domain At12D1_15470 PF01794 Ferric reductase like transmembrane component At12D1_15490 PF05675 Protein of unknown function (DUF817) At12D1_15500 PF01196 Ribosomal protein L17 At12D1_15510 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain At12D1_15510 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain At12D1_15510 PF01000 RNA polymerase Rpb3/RpoA insert domain At12D1_15520 PF00411 Ribosomal protein S11 At12D1_15530 PF00416 Ribosomal protein S13/S18 At12D1_15550 PF00344 SecY translocase At12D1_15560 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A At12D1_15570 PF00327 Ribosomal protein L30p/L7e At12D1_15580 PF00333 Ribosomal protein S5, N-terminal domain At12D1_15580 PF03719 Ribosomal protein S5, C-terminal domain At12D1_15590 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast At12D1_15600 PF00347 Ribosomal protein L6 At12D1_15610 PF00410 Ribosomal protein S8 At12D1_15620 PF00253 Ribosomal protein S14p/S29e At12D1_15630 PF00281 Ribosomal protein L5 At12D1_15630 PF00673 ribosomal L5P family C-terminus At12D1_15640 PF00467 KOW motif At12D1_15640 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 At12D1_15650 PF00238 Ribosomal protein L14p/L23e At12D1_15660 PF00366 Ribosomal protein S17 At12D1_15670 PF00831 Ribosomal L29 protein At12D1_15680 PF00252 Ribosomal protein L16p/L10e At12D1_15690 PF00189 Ribosomal protein S3, C-terminal domain At12D1_15690 PF07650 KH domain At12D1_15700 PF00237 Ribosomal protein L22p/L17e At12D1_15710 PF00203 Ribosomal protein S19 At12D1_15720 PF00181 Ribosomal Proteins L2, RNA binding domain At12D1_15720 PF03947 Ribosomal Proteins L2, C-terminal domain At12D1_15730 PF00276 Ribosomal protein L23 At12D1_15740 PF00573 Ribosomal protein L4/L1 family At12D1_15750 PF00297 Ribosomal protein L3 At12D1_15760 PF00338 Ribosomal protein S10p/S20e At12D1_15770 PF00009 Elongation factor Tu GTP binding domain At12D1_15770 PF03144 Elongation factor Tu domain 2 At12D1_15770 PF03143 Elongation factor Tu C-terminal domain At12D1_15780 PF03144 Elongation factor Tu domain 2 At12D1_15780 PF14492 Elongation Factor G, domain II At12D1_15780 PF00679 Elongation factor G C-terminus At12D1_15780 PF00009 Elongation factor Tu GTP binding domain At12D1_15780 PF03764 Elongation factor G, domain IV At12D1_15790 PF00177 Ribosomal protein S7p/S5e At12D1_15800 PF00164 Ribosomal protein S12/S23 At12D1_15840 PF05000 RNA polymerase Rpb1, domain 4 At12D1_15840 PF04997 RNA polymerase Rpb1, domain 1 At12D1_15840 PF04983 RNA polymerase Rpb1, domain 3 At12D1_15840 PF00623 RNA polymerase Rpb1, domain 2 At12D1_15840 PF04998 RNA polymerase Rpb1, domain 5 At12D1_15850 PF04565 RNA polymerase Rpb2, domain 3 At12D1_15850 PF00562 RNA polymerase Rpb2, domain 6 At12D1_15850 PF04560 RNA polymerase Rpb2, domain 7 At12D1_15850 PF04563 RNA polymerase beta subunit At12D1_15850 PF10385 RNA polymerase beta subunit external 1 domain At12D1_15850 PF04561 RNA polymerase Rpb2, domain 2 At12D1_15860 PF16320 Ribosomal protein L7/L12 dimerisation domain At12D1_15860 PF00542 Ribosomal protein L7/L12 C-terminal domain At12D1_15870 PF00466 Ribosomal protein L10 At12D1_15880 PF00687 Ribosomal protein L1p/L10e family At12D1_15890 PF03946 Ribosomal protein L11, N-terminal domain At12D1_15890 PF00298 Ribosomal protein L11, RNA binding domain At12D1_15900 PF00467 KOW motif At12D1_15900 PF02357 Transcription termination factor nusG At12D1_15910 PF00584 SecE/Sec61-gamma subunits of protein translocation complex At12D1_15920 PF02719 Polysaccharide biosynthesis protein At12D1_15920 PF08485 Polysaccharide biosynthesis protein C-terminal At12D1_15930 PF03144 Elongation factor Tu domain 2 At12D1_15930 PF03143 Elongation factor Tu C-terminal domain At12D1_15930 PF00009 Elongation factor Tu GTP binding domain At12D1_15940 PF03741 Integral membrane protein TerC family At12D1_15950 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme At12D1_15990 PF00664 ABC transporter transmembrane region At12D1_15990 PF00005 ABC transporter At12D1_16070 PF04542 Sigma-70 region 2 At12D1_16070 PF04545 Sigma-70, region 4 At12D1_16090 PF00158 Sigma-54 interaction domain At12D1_16090 PF02954 Bacterial regulatory protein, Fis family At12D1_16090 PF00072 Response regulator receiver domain At12D1_16100 PF00072 Response regulator receiver domain At12D1_16100 PF08769 Sporulation initiation factor Spo0A C terminal At12D1_16110 PF00497 Bacterial extracellular solute-binding proteins, family 3 At12D1_16110 PF00072 Response regulator receiver domain At12D1_16110 PF01627 Hpt domain At12D1_16110 PF00512 His Kinase A (phospho-acceptor) domain At12D1_16110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_16120 PF00072 Response regulator receiver domain At12D1_16130 PF08447 PAS fold At12D1_16130 PF13426 PAS domain At12D1_16130 PF07536 HWE histidine kinase At12D1_16140 PF00072 Response regulator receiver domain At12D1_16150 PF01590 GAF domain At12D1_16150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_16150 PF00512 His Kinase A (phospho-acceptor) domain At12D1_16150 PF08446 PAS fold At12D1_16150 PF00360 Phytochrome region At12D1_16160 PF08032 RNA 2'-O ribose methyltransferase substrate binding At12D1_16160 PF00588 SpoU rRNA Methylase family At12D1_16170 PF03061 Thioesterase superfamily At12D1_16210 PF13460 NAD(P)H-binding At12D1_16220 PF01638 HxlR-like helix-turn-helix At12D1_16250 PF12344 Ultra-violet resistance protein B At12D1_16250 PF17757 UvrB interaction domain At12D1_16250 PF02151 UvrB/uvrC motif At12D1_16250 PF04851 Type III restriction enzyme, res subunit At12D1_16250 PF00271 Helicase conserved C-terminal domain At12D1_16270 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) At12D1_16270 PF00756 Putative esterase At12D1_16310 PF00684 DnaJ central domain At12D1_16310 PF01556 DnaJ C terminal domain At12D1_16310 PF00226 DnaJ domain At12D1_16350 PF00990 Diguanylate cyclase, GGDEF domain At12D1_16350 PF17151 Periplasmic sensor domain At12D1_16370 PF00005 ABC transporter At12D1_16370 PF08402 TOBE domain At12D1_16390 PF01547 Bacterial extracellular solute-binding protein At12D1_16400 PF00155 Aminotransferase class I and II At12D1_16410 PF05025 RbsD / FucU transport protein family At12D1_16430 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain At12D1_16430 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain At12D1_16440 PF00440 Bacterial regulatory proteins, tetR family At12D1_16450 PF12833 Helix-turn-helix domain At12D1_16450 PF06719 AraC-type transcriptional regulator N-terminus At12D1_16460 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_16460 PF00107 Zinc-binding dehydrogenase At12D1_16470 PF07992 Pyridine nucleotide-disulphide oxidoreductase At12D1_16480 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ At12D1_16490 PF00196 Bacterial regulatory proteins, luxR family At12D1_16490 PF03472 Autoinducer binding domain At12D1_16500 PF14490 Helix-hairpin-helix containing domain At12D1_16500 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain At12D1_16500 PF13538 UvrD-like helicase C-terminal domain At12D1_16540 PF08281 Sigma-70, region 4 At12D1_16540 PF04542 Sigma-70 region 2 At12D1_16570 PF00248 Aldo/keto reductase family At12D1_16600 PF10369 Small subunit of acetolactate synthase At12D1_16610 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain At12D1_16610 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain At12D1_16610 PF00205 Thiamine pyrophosphate enzyme, central domain At12D1_16650 PF13302 Acetyltransferase (GNAT) domain At12D1_16670 PF13180 PDZ domain At12D1_16680 PF01145 SPFH domain / Band 7 family At12D1_16690 PF01145 SPFH domain / Band 7 family At12D1_16700 PF00186 Dihydrofolate reductase At12D1_16710 PF00303 Thymidylate synthase At12D1_16770 PF01565 FAD binding domain At12D1_16770 PF02913 FAD linked oxidases, C-terminal domain At12D1_16780 PF00873 AcrB/AcrD/AcrF family At12D1_16790 PF13533 Biotin-lipoyl like At12D1_16810 PF00580 UvrD/REP helicase N-terminal domain At12D1_16810 PF13361 UvrD-like helicase C-terminal domain At12D1_16860 PF00857 Isochorismatase family At12D1_16900 PF00557 Metallopeptidase family M24 At12D1_16900 PF01321 Creatinase/Prolidase N-terminal domain At12D1_16930 PF02630 SCO1/SenC At12D1_16950 PF01584 CheW-like domain At12D1_16970 PF00929 Exonuclease At12D1_16980 PF03466 LysR substrate binding domain At12D1_16980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_17000 PF00583 Acetyltransferase (GNAT) family At12D1_17010 PF01636 Phosphotransferase enzyme family At12D1_17020 PF12826 Helix-hairpin-helix motif At12D1_17020 PF03119 NAD-dependent DNA ligase C4 zinc finger domain At12D1_17020 PF03120 NAD-dependent DNA ligase OB-fold domain At12D1_17020 PF01653 NAD-dependent DNA ligase adenylation domain At12D1_17020 PF00533 BRCA1 C Terminus (BRCT) domain At12D1_17030 PF02463 RecF/RecN/SMC N terminal domain At12D1_17040 PF13525 Outer membrane lipoprotein At12D1_17050 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase At12D1_17060 PF12327 FtsZ family, C-terminal domain At12D1_17060 PF00091 Tubulin/FtsZ family, GTPase domain At12D1_17070 PF02491 SHS2 domain inserted in FTSA At12D1_17080 PF08478 POTRA domain, FtsQ-type At12D1_17080 PF03799 Cell division protein FtsQ At12D1_17090 PF07478 D-ala D-ala ligase C-terminus At12D1_17090 PF01820 D-ala D-ala ligase N-terminus At12D1_17100 PF07690 Major Facilitator Superfamily At12D1_17100 PF00083 Sugar (and other) transporter At12D1_17110 PF00990 Diguanylate cyclase, GGDEF domain At12D1_17110 PF00563 EAL domain At12D1_17120 PF01565 FAD binding domain At12D1_17120 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain At12D1_17130 PF08245 Mur ligase middle domain At12D1_17130 PF02875 Mur ligase family, glutamate ligase domain At12D1_17130 PF01225 Mur ligase family, catalytic domain At12D1_17140 PF04101 Glycosyltransferase family 28 C-terminal domain At12D1_17140 PF03033 Glycosyltransferase family 28 N-terminal domain At12D1_17150 PF01098 Cell cycle protein At12D1_17160 PF02875 Mur ligase family, glutamate ligase domain At12D1_17160 PF08245 Mur ligase middle domain At12D1_17170 PF00953 Glycosyl transferase family 4 At12D1_17170 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 At12D1_17180 PF02875 Mur ligase family, glutamate ligase domain At12D1_17180 PF08245 Mur ligase middle domain At12D1_17180 PF01225 Mur ligase family, catalytic domain At12D1_17190 PF01225 Mur ligase family, catalytic domain At12D1_17190 PF02875 Mur ligase family, glutamate ligase domain At12D1_17190 PF08245 Mur ligase middle domain At12D1_17200 PF03717 Penicillin-binding Protein dimerisation domain At12D1_17200 PF00905 Penicillin binding protein transpeptidase domain At12D1_17220 PF01795 MraW methylase family At12D1_17230 PF02381 MraZ protein, putative antitoxin-like At12D1_17240 PF03994 Domain of Unknown Function (DUF350) At12D1_17260 PF03738 Glutathionylspermidine synthase preATP-grasp At12D1_17300 PF01510 N-acetylmuramoyl-L-alanine amidase At12D1_17310 PF00226 DnaJ domain At12D1_17310 PF05099 Tellurite resistance protein TerB At12D1_17320 PF00365 Phosphofructokinase At12D1_17360 PF13649 Methyltransferase domain At12D1_17370 PF01183 Glycosyl hydrolases family 25 At12D1_17390 PF02219 Methylenetetrahydrofolate reductase At12D1_17400 PF01209 ubiE/COQ5 methyltransferase family At12D1_17410 PF00005 ABC transporter At12D1_17410 PF12848 ABC transporter At12D1_17420 PF12146 Serine aminopeptidase, S33 At12D1_17430 PF02515 CoA-transferase family III At12D1_17440 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain At12D1_17440 PF00205 Thiamine pyrophosphate enzyme, central domain At12D1_17440 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain At12D1_17460 PF01042 Endoribonuclease L-PSP At12D1_17490 PF03734 L,D-transpeptidase catalytic domain At12D1_17490 PF01476 LysM domain At12D1_17500 PF07690 Major Facilitator Superfamily At12D1_17540 PF10609 NUBPL iron-transfer P-loop NTPase At12D1_17560 PF00465 Iron-containing alcohol dehydrogenase At12D1_17570 PF00171 Aldehyde dehydrogenase family At12D1_17580 PF03951 Glutamine synthetase, beta-Grasp domain At12D1_17580 PF00120 Glutamine synthetase, catalytic domain At12D1_17590 PF13520 Amino acid permease At12D1_17610 PF01418 Helix-turn-helix domain, rpiR family At12D1_17610 PF01380 SIS domain At12D1_17620 PF13416 Bacterial extracellular solute-binding protein At12D1_17650 PF08402 TOBE domain At12D1_17650 PF00005 ABC transporter At12D1_17660 PF00107 Zinc-binding dehydrogenase At12D1_17660 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_17690 PF07690 Major Facilitator Superfamily At12D1_17700 PF02607 B12 binding domain At12D1_17700 PF02965 Vitamin B12 dependent methionine synthase, activation domain At12D1_17700 PF00809 Pterin binding enzyme At12D1_17700 PF02310 B12 binding domain At12D1_17700 PF02574 Homocysteine S-methyltransferase At12D1_17740 PF13505 Outer membrane protein beta-barrel domain At12D1_17760 PF04402 Protein of unknown function (DUF541) At12D1_17780 PF01894 Uncharacterised protein family UPF0047 At12D1_17790 PF01590 GAF domain At12D1_17790 PF00512 His Kinase A (phospho-acceptor) domain At12D1_17790 PF08446 PAS fold At12D1_17790 PF00360 Phytochrome region At12D1_17790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_17810 PF04539 Sigma-70 region 3 At12D1_17810 PF04545 Sigma-70, region 4 At12D1_17810 PF04542 Sigma-70 region 2 At12D1_17810 PF04546 Sigma-70, non-essential region At12D1_17810 PF03979 Sigma-70 factor, region 1.1 At12D1_17810 PF00140 Sigma-70 factor, region 1.2 At12D1_17820 PF10410 DnaB-helicase binding domain of primase At12D1_17820 PF01807 CHC2 zinc finger At12D1_17820 PF08278 DNA primase DnaG DnaB-binding At12D1_17820 PF08275 DNA primase catalytic core, N-terminal domain At12D1_17850 PF00117 Glutamine amidotransferase class-I At12D1_17850 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain At12D1_17860 PF01554 MatE At12D1_17870 PF02743 Cache domain At12D1_17870 PF00672 HAMP domain At12D1_17870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_17890 PF04228 Putative neutral zinc metallopeptidase At12D1_17920 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain At12D1_17920 PF02142 MGS-like domain At12D1_17920 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain At12D1_17940 PF07694 5TMR of 5TMR-LYT At12D1_17940 PF00990 Diguanylate cyclase, GGDEF domain At12D1_17970 PF03449 Transcription elongation factor, N-terminal At12D1_17970 PF01272 Transcription elongation factor, GreA/GreB, C-term At12D1_17980 PF00534 Glycosyl transferases group 1 At12D1_17990 PF01037 Lrp/AsnC ligand binding domain At12D1_18000 PF07992 Pyridine nucleotide-disulphide oxidoreductase At12D1_18010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_18010 PF03466 LysR substrate binding domain At12D1_18030 PF00724 NADH:flavin oxidoreductase / NADH oxidase family At12D1_18060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_18060 PF03466 LysR substrate binding domain At12D1_18080 PF01699 Sodium/calcium exchanger protein At12D1_18100 PF00563 EAL domain At12D1_18100 PF05231 MASE1 At12D1_18130 PF00313 'Cold-shock' DNA-binding domain At12D1_18140 PF00753 Metallo-beta-lactamase superfamily At12D1_18160 PF12802 MarR family At12D1_18170 PF00486 Transcriptional regulatory protein, C terminal At12D1_18170 PF00072 Response regulator receiver domain At12D1_18180 PF00672 HAMP domain At12D1_18180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_18180 PF00512 His Kinase A (phospho-acceptor) domain At12D1_18190 PF01588 Putative tRNA binding domain At12D1_18200 PF03807 NADP oxidoreductase coenzyme F420-dependent At12D1_18200 PF14748 Pyrroline-5-carboxylate reductase dimerisation At12D1_18230 PF01790 Prolipoprotein diacylglyceryl transferase At12D1_18280 PF14572 Phosphoribosyl synthetase-associated domain At12D1_18280 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase At12D1_18300 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase At12D1_18320 PF00535 Glycosyl transferase family 2 At12D1_18330 PF02203 Tar ligand binding domain homologue At12D1_18330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_18330 PF00672 HAMP domain At12D1_18340 PF00171 Aldehyde dehydrogenase family At12D1_18350 PF02954 Bacterial regulatory protein, Fis family At12D1_18360 PF00990 Diguanylate cyclase, GGDEF domain At12D1_18360 PF03707 Bacterial signalling protein N terminal repeat At12D1_18360 PF13188 PAS domain At12D1_18360 PF00563 EAL domain At12D1_18370 PF01386 Ribosomal L25p family At12D1_18370 PF14693 Ribosomal protein TL5, C-terminal domain At12D1_18380 PF08447 PAS fold At12D1_18380 PF08448 PAS fold At12D1_18380 PF00563 EAL domain At12D1_18380 PF00990 Diguanylate cyclase, GGDEF domain At12D1_18400 PF01195 Peptidyl-tRNA hydrolase At12D1_18420 PF02617 ATP-dependent Clp protease adaptor protein ClpS At12D1_18430 PF06071 Protein of unknown function (DUF933) At12D1_18430 PF01926 50S ribosome-binding GTPase At12D1_18470 PF00156 Phosphoribosyl transferase domain At12D1_18490 PF00033 Cytochrome b/b6/petB At12D1_18490 PF02167 Cytochrome C1 family At12D1_18490 PF00032 Cytochrome b(C-terminal)/b6/petD At12D1_18500 PF00032 Cytochrome b(C-terminal)/b6/petD At12D1_18500 PF00033 Cytochrome b/b6/petB At12D1_18510 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal At12D1_18510 PF00355 Rieske [2Fe-2S] domain At12D1_18530 PF00005 ABC transporter At12D1_18530 PF00664 ABC transporter transmembrane region At12D1_18540 PF00664 ABC transporter transmembrane region At12D1_18540 PF00005 ABC transporter At12D1_18560 PF00588 SpoU rRNA Methylase family At12D1_18570 PF02690 Na+/Pi-cotransporter At12D1_18590 PF01218 Coproporphyrinogen III oxidase At12D1_18620 PF13735 tRNA nucleotidyltransferase domain 2 putative At12D1_18620 PF12627 Probable RNA and SrmB- binding site of polymerase A At12D1_18620 PF01743 Poly A polymerase head domain At12D1_18630 PF00293 NUDIX domain At12D1_18650 PF07726 ATPase family associated with various cellular activities (AAA) At12D1_18650 PF17863 AAA lid domain At12D1_18690 PF00583 Acetyltransferase (GNAT) family At12D1_18700 PF03466 LysR substrate binding domain At12D1_18700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_18720 PF07690 Major Facilitator Superfamily At12D1_18740 PF13409 Glutathione S-transferase, N-terminal domain At12D1_18750 PF00293 NUDIX domain At12D1_18770 PF00682 HMGL-like At12D1_18770 PF08502 LeuA allosteric (dimerisation) domain At12D1_18780 PF03594 Benzoate membrane transport protein At12D1_18810 PF04545 Sigma-70, region 4 At12D1_18810 PF04542 Sigma-70 region 2 At12D1_18830 PF00574 Clp protease At12D1_18840 PF04955 HupE / UreJ protein At12D1_18860 PF14489 QueF-like protein At12D1_18870 PF16916 Dimerisation domain of Zinc Transporter At12D1_18870 PF01545 Cation efflux family At12D1_18890 PF13458 Periplasmic binding protein At12D1_18910 PF01022 Bacterial regulatory protein, arsR family At12D1_18920 PF00571 CBS domain At12D1_18920 PF00005 ABC transporter At12D1_18930 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_18940 PF04069 Substrate binding domain of ABC-type glycine betaine transport system At12D1_18950 PF00265 Thymidine kinase At12D1_18960 PF00127 Copper binding proteins, plastocyanin/azurin family At12D1_18980 PF00196 Bacterial regulatory proteins, luxR family At12D1_18980 PF03472 Autoinducer binding domain At12D1_18990 PF03350 Uncharacterized protein family, UPF0114 At12D1_19000 PF00593 TonB dependent receptor At12D1_19000 PF04886 PT repeat At12D1_19000 PF07715 TonB-dependent Receptor Plug Domain At12D1_19020 PF00425 chorismate binding enzyme At12D1_19020 PF04715 Anthranilate synthase component I, N terminal region At12D1_19020 PF00117 Glutamine amidotransferase class-I At12D1_19040 PF01966 HD domain At12D1_19040 PF11871 Domain of unknown function (DUF3391) At12D1_19050 PF13382 Adenine deaminase C-terminal domain At12D1_19050 PF01979 Amidohydrolase family At12D1_19060 PF00583 Acetyltransferase (GNAT) family At12D1_19070 PF00128 Alpha amylase, catalytic domain At12D1_19080 PF00294 pfkB family carbohydrate kinase At12D1_19120 PF01926 50S ribosome-binding GTPase At12D1_19120 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal At12D1_19160 PF05992 SbmA/BacA-like family At12D1_19180 PF00557 Metallopeptidase family M24 At12D1_19210 PF01799 [2Fe-2S] binding domain At12D1_19210 PF00111 2Fe-2S iron-sulfur cluster binding domain At12D1_19220 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain At12D1_19220 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase At12D1_19250 PF03466 LysR substrate binding domain At12D1_19250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_19280 PF01979 Amidohydrolase family At12D1_19300 PF01070 FMN-dependent dehydrogenase At12D1_19310 PF00893 Small Multidrug Resistance protein At12D1_19320 PF00440 Bacterial regulatory proteins, tetR family At12D1_19320 PF17932 Tetracyclin repressor-like, C-terminal domain At12D1_19330 PF07943 Penicillin-binding protein 5, C-terminal domain At12D1_19330 PF00768 D-alanyl-D-alanine carboxypeptidase At12D1_19350 PF00576 HIUase/Transthyretin family At12D1_19360 PF04115 Ureidoglycolate lyase At12D1_19390 PF09349 OHCU decarboxylase At12D1_19390 PF01014 Uricase At12D1_19410 PF06299 Protein of unknown function (DUF1045) At12D1_19420 PF01266 FAD dependent oxidoreductase At12D1_19430 PF01266 FAD dependent oxidoreductase At12D1_19430 PF05430 S-adenosyl-L-methionine-dependent methyltransferase At12D1_19440 PF00672 HAMP domain At12D1_19440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_19440 PF00512 His Kinase A (phospho-acceptor) domain At12D1_19440 PF01627 Hpt domain At12D1_19440 PF00072 Response regulator receiver domain At12D1_19440 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) At12D1_19450 PF00271 Helicase conserved C-terminal domain At12D1_19450 PF00270 DEAD/DEAH box helicase At12D1_19470 PF07681 DoxX At12D1_19480 PF01476 LysM domain At12D1_19480 PF03734 L,D-transpeptidase catalytic domain At12D1_19500 PF14403 Circularly permuted ATP-grasp type 2 At12D1_19520 PF01841 Transglutaminase-like superfamily At12D1_19520 PF08379 Bacterial transglutaminase-like N-terminal region At12D1_19560 PF00300 Histidine phosphatase superfamily (branch 1) At12D1_19580 PF02653 Branched-chain amino acid transport system / permease component At12D1_19590 PF00005 ABC transporter At12D1_19600 PF13407 Periplasmic binding protein domain At12D1_19610 PF03466 LysR substrate binding domain At12D1_19610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_19740 PF00239 Resolvase, N terminal domain At12D1_19740 PF02796 Helix-turn-helix domain of resolvase At12D1_19780 PF10137 Predicted nucleotide-binding protein containing TIR-like domain At12D1_19790 PF01609 Transposase DDE domain At12D1_19800 PF13340 Putative transposase of IS4/5 family (DUF4096) At12D1_19820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_19820 PF00672 HAMP domain At12D1_19830 PF07690 Major Facilitator Superfamily At12D1_19850 PF02574 Homocysteine S-methyltransferase At12D1_19850 PF00809 Pterin binding enzyme At12D1_19850 PF02965 Vitamin B12 dependent methionine synthase, activation domain At12D1_19850 PF02607 B12 binding domain At12D1_19850 PF02310 B12 binding domain At12D1_19860 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_19870 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_19880 PF00497 Bacterial extracellular solute-binding proteins, family 3 At12D1_19890 PF00005 ABC transporter At12D1_19930 PF00331 Glycosyl hydrolase family 10 At12D1_19940 PF00535 Glycosyl transferase family 2 At12D1_19970 PF03808 Glycosyl transferase WecB/TagA/CpsF family At12D1_20000 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I At12D1_20000 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain At12D1_20000 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III At12D1_20000 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II At12D1_20030 PF01152 Bacterial-like globin At12D1_20070 PF00440 Bacterial regulatory proteins, tetR family At12D1_20070 PF08362 YcdC-like protein, C-terminal region At12D1_20080 PF01546 Peptidase family M20/M25/M40 At12D1_20080 PF07687 Peptidase dimerisation domain At12D1_20090 PF01979 Amidohydrolase family At12D1_20100 PF00293 NUDIX domain At12D1_20110 PF00005 ABC transporter At12D1_20120 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_20130 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_20160 PF00873 AcrB/AcrD/AcrF family At12D1_20190 PF02492 CobW/HypB/UreG, nucleotide-binding domain At12D1_20200 PF01730 UreF At12D1_20210 PF05194 UreE urease accessory protein, C-terminal domain At12D1_20210 PF02814 UreE urease accessory protein, N-terminal domain At12D1_20220 PF08534 Redoxin At12D1_20240 PF00449 Urease alpha-subunit, N-terminal domain At12D1_20240 PF01979 Amidohydrolase family At12D1_20260 PF07007 Lysozyme inhibitor LprI At12D1_20280 PF00699 Urease beta subunit At12D1_20290 PF06906 Protein of unknown function (DUF1272) At12D1_20300 PF00547 Urease, gamma subunit At12D1_20310 PF01774 UreD urease accessory protein At12D1_20330 PF00005 ABC transporter At12D1_20350 PF12399 Branched-chain amino acid ATP-binding cassette transporter At12D1_20350 PF00005 ABC transporter At12D1_20370 PF02653 Branched-chain amino acid transport system / permease component At12D1_20390 PF10931 Protein of unknown function (DUF2735) At12D1_20400 PF03951 Glutamine synthetase, beta-Grasp domain At12D1_20400 PF00120 Glutamine synthetase, catalytic domain At12D1_20410 PF00106 short chain dehydrogenase At12D1_20420 PF18415 Histidine kinase receptor ArcB trans-membrane domain At12D1_20420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_20420 PF01627 Hpt domain At12D1_20420 PF00989 PAS fold At12D1_20420 PF00072 Response regulator receiver domain At12D1_20420 PF00512 His Kinase A (phospho-acceptor) domain At12D1_20430 PF00072 Response regulator receiver domain At12D1_20450 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain At12D1_20450 PF01522 Polysaccharide deacetylase At12D1_20460 PF13458 Periplasmic binding protein At12D1_20480 PF00005 ABC transporter At12D1_20490 PF00005 ABC transporter At12D1_20490 PF12399 Branched-chain amino acid ATP-binding cassette transporter At12D1_20500 PF02653 Branched-chain amino acid transport system / permease component At12D1_20500 PF11862 Domain of unknown function (DUF3382) At12D1_20510 PF02653 Branched-chain amino acid transport system / permease component At12D1_20520 PF00459 Inositol monophosphatase family At12D1_20580 PF00486 Transcriptional regulatory protein, C terminal At12D1_20580 PF00072 Response regulator receiver domain At12D1_20620 PF10090 Histidine phosphotransferase C-terminal domain At12D1_20650 PF00588 SpoU rRNA Methylase family At12D1_20670 PF00849 RNA pseudouridylate synthase At12D1_20690 PF04542 Sigma-70 region 2 At12D1_20690 PF04545 Sigma-70, region 4 At12D1_20690 PF00140 Sigma-70 factor, region 1.2 At12D1_20710 PF00709 Adenylosuccinate synthetase At12D1_20760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily At12D1_20780 PF03167 Uracil DNA glycosylase superfamily At12D1_20790 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily At12D1_20800 PF04304 Protein of unknown function (DUF454) At12D1_20810 PF00005 ABC transporter At12D1_20820 PF01032 FecCD transport family At12D1_20830 PF01497 Periplasmic binding protein At12D1_20850 PF06228 Haem utilisation ChuX/HutX At12D1_20880 PF13443 Cro/C1-type HTH DNA-binding domain At12D1_20900 PF00551 Formyl transferase At12D1_20910 PF05973 Phage derived protein Gp49-like (DUF891) At12D1_20930 PF00512 His Kinase A (phospho-acceptor) domain At12D1_20930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_20930 PF00672 HAMP domain At12D1_20940 PF00072 Response regulator receiver domain At12D1_20940 PF00486 Transcriptional regulatory protein, C terminal At12D1_20960 PF03401 Tripartite tricarboxylate transporter family receptor At12D1_20980 PF01970 Tripartite tricarboxylate transporter TctA family At12D1_21010 PF01032 FecCD transport family At12D1_21020 PF01032 FecCD transport family At12D1_21030 PF00005 ABC transporter At12D1_21040 PF00210 Ferritin-like domain At12D1_21060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_21060 PF00672 HAMP domain At12D1_21070 PF00248 Aldo/keto reductase family At12D1_21080 PF07690 Major Facilitator Superfamily At12D1_21090 PF03466 LysR substrate binding domain At12D1_21090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_21100 PF03466 LysR substrate binding domain At12D1_21100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_21120 PF13533 Biotin-lipoyl like At12D1_21130 PF00873 AcrB/AcrD/AcrF family At12D1_21160 PF13091 PLD-like domain At12D1_21160 PF13396 Phospholipase_D-nuclease N-terminal At12D1_21170 PF08543 Phosphomethylpyrimidine kinase At12D1_21180 PF00484 Carbonic anhydrase At12D1_21200 PF01118 Semialdehyde dehydrogenase, NAD binding domain At12D1_21200 PF02774 Semialdehyde dehydrogenase, dimerisation domain At12D1_21210 PF00083 Sugar (and other) transporter At12D1_21220 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch At12D1_21220 PF05222 Alanine dehydrogenase/PNT, N-terminal domain At12D1_21220 PF01262 Alanine dehydrogenase/PNT, C-terminal domain At12D1_21230 PF02233 NAD(P) transhydrogenase beta subunit At12D1_21240 PF01613 Flavin reductase like domain At12D1_21250 PF00881 Nitroreductase family At12D1_21260 PF00561 alpha/beta hydrolase fold At12D1_21270 PF01042 Endoribonuclease L-PSP At12D1_21280 PF00857 Isochorismatase family At12D1_21290 PF00296 Luciferase-like monooxygenase At12D1_21300 PF01126 Heme oxygenase At12D1_21310 PF00701 Dihydrodipicolinate synthetase family At12D1_21320 PF00392 Bacterial regulatory proteins, gntR family At12D1_21320 PF07729 FCD domain At12D1_21340 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_21350 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_21360 PF03459 TOBE domain At12D1_21360 PF17912 MalK OB fold domain At12D1_21360 PF00005 ABC transporter At12D1_21370 PF00294 pfkB family carbohydrate kinase At12D1_21380 PF03576 Peptidase family S58 At12D1_21390 PF01063 Amino-transferase class IV At12D1_21400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_21400 PF03466 LysR substrate binding domain At12D1_21410 PF00144 Beta-lactamase At12D1_21420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_21420 PF00005 ABC transporter At12D1_21430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_21430 PF00005 ABC transporter At12D1_21450 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_21460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_21470 PF01244 Membrane dipeptidase (Peptidase family M19) At12D1_21490 PF03706 Lysylphosphatidylglycerol synthase TM region At12D1_21490 PF09924 Uncharacterised conserved protein (DUF2156) At12D1_21520 PF07690 Major Facilitator Superfamily At12D1_21540 PF04444 Catechol dioxygenase N terminus At12D1_21540 PF00775 Dioxygenase At12D1_21550 PF00465 Iron-containing alcohol dehydrogenase At12D1_21560 PF04909 Amidohydrolase At12D1_21570 PF08028 Acyl-CoA dehydrogenase, C-terminal domain At12D1_21570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain At12D1_21580 PF01613 Flavin reductase like domain At12D1_21620 PF00512 His Kinase A (phospho-acceptor) domain At12D1_21620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_21630 PF00486 Transcriptional regulatory protein, C terminal At12D1_21630 PF00072 Response regulator receiver domain At12D1_21650 PF00724 NADH:flavin oxidoreductase / NADH oxidase family At12D1_21660 PF08402 TOBE domain At12D1_21660 PF00005 ABC transporter At12D1_21670 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_21700 PF00486 Transcriptional regulatory protein, C terminal At12D1_21700 PF00072 Response regulator receiver domain At12D1_21710 PF13188 PAS domain At12D1_21710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_21710 PF00512 His Kinase A (phospho-acceptor) domain At12D1_21710 PF08448 PAS fold At12D1_21710 PF00072 Response regulator receiver domain At12D1_21720 PF00202 Aminotransferase class-III At12D1_21730 PF03466 LysR substrate binding domain At12D1_21730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_21740 PF00313 'Cold-shock' DNA-binding domain At12D1_21760 PF14525 AraC-binding-like domain At12D1_21770 PF00795 Carbon-nitrogen hydrolase At12D1_21780 PF00795 Carbon-nitrogen hydrolase At12D1_21840 PF00392 Bacterial regulatory proteins, gntR family At12D1_21840 PF00155 Aminotransferase class I and II At12D1_21860 PF00795 Carbon-nitrogen hydrolase At12D1_21890 PF00586 AIR synthase related protein, N-terminal domain At12D1_21890 PF02769 AIR synthase related protein, C-terminal domain At12D1_21900 PF13439 Glycosyltransferase Family 4 At12D1_21900 PF00534 Glycosyl transferases group 1 At12D1_21940 PF12146 Serine aminopeptidase, S33 At12D1_21960 PF07690 Major Facilitator Superfamily At12D1_21970 PF00106 short chain dehydrogenase At12D1_21980 PF00175 Oxidoreductase NAD-binding domain At12D1_21980 PF00111 2Fe-2S iron-sulfur cluster binding domain At12D1_21980 PF00970 Oxidoreductase FAD-binding domain At12D1_21990 PF00866 Ring hydroxylating beta subunit At12D1_22000 PF00848 Ring hydroxylating alpha subunit (catalytic domain) At12D1_22000 PF00355 Rieske [2Fe-2S] domain At12D1_22010 PF04444 Catechol dioxygenase N terminus At12D1_22010 PF00775 Dioxygenase At12D1_22020 PF02426 Muconolactone delta-isomerase At12D1_22030 PF13378 Enolase C-terminal domain-like At12D1_22030 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain At12D1_22040 PF03466 LysR substrate binding domain At12D1_22040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_22070 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_22080 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_22090 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_22090 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_22100 PF00005 ABC transporter At12D1_22100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_22130 PF00291 Pyridoxal-phosphate dependent enzyme At12D1_22140 PF00106 short chain dehydrogenase At12D1_22170 PF12833 Helix-turn-helix domain At12D1_22170 PF02311 AraC-like ligand binding domain At12D1_22180 PF13005 zinc-finger binding domain of transposase IS66 At12D1_22180 PF13007 Transposase C of IS166 homeodomain At12D1_22180 PF03050 Transposase IS66 family At12D1_22180 PF13817 IS66 C-terminal element At12D1_22210 PF13378 Enolase C-terminal domain-like At12D1_22210 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain At12D1_22220 PF01070 FMN-dependent dehydrogenase At12D1_22230 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain At12D1_22230 PF00205 Thiamine pyrophosphate enzyme, central domain At12D1_22230 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain At12D1_22240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_22240 PF03466 LysR substrate binding domain At12D1_22260 PF07690 Major Facilitator Superfamily At12D1_22270 PF00171 Aldehyde dehydrogenase family At12D1_22280 PF00795 Carbon-nitrogen hydrolase At12D1_22300 PF02322 Cytochrome bd terminal oxidase subunit II At12D1_22310 PF01654 Cytochrome bd terminal oxidase subunit I At12D1_22320 PF13276 HTH-like domain At12D1_22320 PF13683 Integrase core domain At12D1_22330 PF01527 Transposase At12D1_22340 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_22340 PF00107 Zinc-binding dehydrogenase At12D1_22360 PF02653 Branched-chain amino acid transport system / permease component At12D1_22370 PF02653 Branched-chain amino acid transport system / permease component At12D1_22380 PF00005 ABC transporter At12D1_22390 PF13407 Periplasmic binding protein domain At12D1_22400 PF00356 Bacterial regulatory proteins, lacI family At12D1_22410 PF13592 Winged helix-turn helix At12D1_22420 PF02371 Transposase IS116/IS110/IS902 family At12D1_22420 PF01548 Transposase At12D1_22430 PF13358 DDE superfamily endonuclease At12D1_22440 PF13407 Periplasmic binding protein domain At12D1_22450 PF02653 Branched-chain amino acid transport system / permease component At12D1_22460 PF00005 ABC transporter At12D1_22480 PF00106 short chain dehydrogenase At12D1_22490 PF08013 Tagatose 6 phosphate kinase At12D1_22500 PF00294 pfkB family carbohydrate kinase At12D1_22510 PF01325 Iron dependent repressor, N-terminal DNA binding domain At12D1_22510 PF00480 ROK family At12D1_22520 PF01261 Xylose isomerase-like TIM barrel At12D1_22530 PF00005 ABC transporter At12D1_22540 PF02653 Branched-chain amino acid transport system / permease component At12D1_22550 PF13407 Periplasmic binding protein domain At12D1_22560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_22560 PF00672 HAMP domain At12D1_22570 PF00005 ABC transporter At12D1_22580 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_22590 PF01527 Transposase At12D1_22600 PF05717 IS66 Orf2 like protein At12D1_22610 PF13005 zinc-finger binding domain of transposase IS66 At12D1_22610 PF13007 Transposase C of IS166 homeodomain At12D1_22610 PF13817 IS66 C-terminal element At12D1_22610 PF03050 Transposase IS66 family At12D1_22640 PF03328 HpcH/HpaI aldolase/citrate lyase family At12D1_22670 PF00072 Response regulator receiver domain At12D1_22670 PF00486 Transcriptional regulatory protein, C terminal At12D1_22680 PF00512 His Kinase A (phospho-acceptor) domain At12D1_22680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_22680 PF00672 HAMP domain At12D1_22720 PF13505 Outer membrane protein beta-barrel domain At12D1_22750 PF03743 Bacterial conjugation TrbI-like protein At12D1_22810 PF03135 CagE, TrbE, VirB family, component of type IV transporter system At12D1_22830 PF00291 Pyridoxal-phosphate dependent enzyme At12D1_22860 PF01970 Tripartite tricarboxylate transporter TctA family At12D1_22870 PF17831 Pyruvate dehydrogenase E1 component middle domain At12D1_22870 PF00456 Transketolase, thiamine diphosphate binding domain At12D1_22890 PF00291 Pyridoxal-phosphate dependent enzyme At12D1_22900 PF00288 GHMP kinases N terminal domain At12D1_22910 PF06067 Domain of unknown function (DUF932) At12D1_22920 PF05284 Protein of unknown function (DUF736) At12D1_23020 PF01259 SAICAR synthetase At12D1_23030 PF00440 Bacterial regulatory proteins, tetR family At12D1_23040 PF00529 HlyD membrane-fusion protein of T1SS At12D1_23040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion At12D1_23050 PF00873 AcrB/AcrD/AcrF family At12D1_23060 PF02321 Outer membrane efflux protein At12D1_23070 PF09285 Elongation factor P, C-terminal At12D1_23070 PF08207 Elongation factor P (EF-P) KOW-like domain At12D1_23070 PF01132 Elongation factor P (EF-P) OB domain At12D1_23080 PF00152 tRNA synthetases class II (D, K and N) At12D1_23090 PF12544 Lysine-2,3-aminomutase At12D1_23090 PF04055 Radical SAM superfamily At12D1_23120 PF03466 LysR substrate binding domain At12D1_23120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_23130 PF01266 FAD dependent oxidoreductase At12D1_23150 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_23160 PF03459 TOBE domain At12D1_23160 PF00005 ABC transporter At12D1_23180 PF03576 Peptidase family S58 At12D1_23190 PF05690 Thiazole biosynthesis protein ThiG At12D1_23210 PF01266 FAD dependent oxidoreductase At12D1_23220 PF13667 ThiC-associated domain At12D1_23220 PF01964 Radical SAM ThiC family At12D1_23240 PF00550 Phosphopantetheine attachment site At12D1_23300 PF00005 ABC transporter At12D1_23300 PF00664 ABC transporter transmembrane region At12D1_23310 PF13545 Crp-like helix-turn-helix domain At12D1_23310 PF00027 Cyclic nucleotide-binding domain At12D1_23330 PF00211 Adenylate and Guanylate cyclase catalytic domain At12D1_23330 PF00672 HAMP domain At12D1_23350 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain At12D1_23350 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain At12D1_23350 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain At12D1_23360 PF00534 Glycosyl transferases group 1 At12D1_23360 PF13439 Glycosyltransferase Family 4 At12D1_23390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_23390 PF00005 ABC transporter At12D1_23400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_23410 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_23420 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_23420 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_23450 PF03033 Glycosyltransferase family 28 N-terminal domain At12D1_23450 PF04101 Glycosyltransferase family 28 C-terminal domain At12D1_23460 PF03932 CutC family At12D1_23470 PF07690 Major Facilitator Superfamily At12D1_23490 PF02838 Glycosyl hydrolase family 20, domain 2 At12D1_23490 PF00728 Glycosyl hydrolase family 20, catalytic domain At12D1_23510 PF01380 SIS domain At12D1_23510 PF01418 Helix-turn-helix domain, rpiR family At12D1_23530 PF00005 ABC transporter At12D1_23530 PF17912 MalK OB fold domain At12D1_23540 PF01547 Bacterial extracellular solute-binding protein At12D1_23550 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_23560 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_23590 PF01380 SIS domain At12D1_23600 PF01979 Amidohydrolase family At12D1_23610 PF00480 ROK family At12D1_23620 PF01494 FAD binding domain At12D1_23630 PF01569 PAP2 superfamily At12D1_23640 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain At12D1_23640 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase At12D1_23640 PF13288 DXP reductoisomerase C-terminal domain At12D1_23650 PF00155 Aminotransferase class I and II At12D1_23670 PF07244 Surface antigen variable number repeat At12D1_23670 PF17243 POTRA domain TamA domain 1 At12D1_23670 PF01103 Surface antigen At12D1_23690 PF01584 CheW-like domain At12D1_23700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_23700 PF13426 PAS domain At12D1_23700 PF08447 PAS fold At12D1_23710 PF02634 FdhD/NarQ family At12D1_23720 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain At12D1_23730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain At12D1_23730 PF02874 ATP synthase alpha/beta family, beta-barrel domain At12D1_23740 PF00231 ATP synthase At12D1_23750 PF00306 ATP synthase alpha/beta chain, C terminal domain At12D1_23750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain At12D1_23750 PF02874 ATP synthase alpha/beta family, beta-barrel domain At12D1_23760 PF00213 ATP synthase delta (OSCP) subunit At12D1_23780 PF00270 DEAD/DEAH box helicase At12D1_23780 PF17764 3′ DNA-binding domain (3′BD) At12D1_23780 PF18074 Primosomal protein N C-terminal domain At12D1_23780 PF18319 PriA DNA helicase Cys-rich region (CRR) domain At12D1_23790 PF02899 Phage integrase, N-terminal SAM-like domain At12D1_23790 PF00589 Phage integrase family At12D1_23830 PF07992 Pyridine nucleotide-disulphide oxidoreductase At12D1_23830 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain At12D1_23840 PF01810 LysE type translocator At12D1_23860 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) At12D1_23860 PF00364 Biotin-requiring enzyme At12D1_23860 PF02817 e3 binding domain At12D1_23870 PF02779 Transketolase, pyrimidine binding domain At12D1_23870 PF16870 2-oxoglutarate dehydrogenase C-terminal At12D1_23870 PF00676 Dehydrogenase E1 component At12D1_23870 PF16078 2-oxoglutarate dehydrogenase N-terminus At12D1_23880 PF00549 CoA-ligase At12D1_23880 PF02629 CoA binding domain At12D1_23890 PF08442 ATP-grasp domain At12D1_23890 PF00549 CoA-ligase At12D1_23900 PF00056 lactate/malate dehydrogenase, NAD binding domain At12D1_23900 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain At12D1_23910 PF03969 AFG1-like ATPase At12D1_23920 PF02974 Protease inhibitor Inh At12D1_23930 PF13237 4Fe-4S dicluster domain At12D1_23930 PF13085 2Fe-2S iron-sulfur cluster binding domain At12D1_23940 PF00890 FAD binding domain At12D1_23940 PF02910 Fumarate reductase flavoprotein C-term At12D1_23960 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit At12D1_24010 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus At12D1_24010 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus At12D1_24020 PF00814 Glycoprotease family At12D1_24030 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain At12D1_24030 PF03900 Porphobilinogen deaminase, C-terminal domain At12D1_24080 PF00117 Glutamine amidotransferase class-I At12D1_24100 PF02325 YGGT family At12D1_24110 PF02594 Uncharacterised ACR, YggU family COG1872 At12D1_24120 PF00719 Inorganic pyrophosphatase At12D1_24150 PF01432 Peptidase family M3 At12D1_24160 PF01047 MarR family At12D1_24170 PF07690 Major Facilitator Superfamily At12D1_24180 PF00764 Arginosuccinate synthase At12D1_24190 PF00106 short chain dehydrogenase At12D1_24200 PF01810 LysE type translocator At12D1_24220 PF02653 Branched-chain amino acid transport system / permease component At12D1_24240 PF04055 Radical SAM superfamily At12D1_24270 PF01329 Pterin 4 alpha carbinolamine dehydratase At12D1_24280 PF01451 Low molecular weight phosphotyrosine protein phosphatase At12D1_24290 PF02834 LigT like Phosphoesterase At12D1_24300 PF13472 GDSL-like Lipase/Acylhydrolase family At12D1_24310 PF00005 ABC transporter At12D1_24330 PF01027 Inhibitor of apoptosis-promoting Bax1 At12D1_24360 PF00694 Aconitase C-terminal domain At12D1_24360 PF00330 Aconitase family (aconitate hydratase) At12D1_24370 PF00005 ABC transporter At12D1_24380 PF03379 CcmB protein At12D1_24390 PF01578 Cytochrome C assembly protein At12D1_24410 PF08534 Redoxin At12D1_24420 PF00990 Diguanylate cyclase, GGDEF domain At12D1_24430 PF10755 Protein of unknown function (DUF2585) At12D1_24440 PF04279 Intracellular septation protein A At12D1_24450 PF00448 SRP54-type protein, GTPase domain At12D1_24450 PF02881 SRP54-type protein, helical bundle domain At12D1_24460 PF04055 Radical SAM superfamily At12D1_24460 PF00919 Uncharacterized protein family UPF0004 At12D1_24470 PF01678 Diaminopimelate epimerase At12D1_24480 PF12706 Beta-lactamase superfamily domain At12D1_24490 PF00448 SRP54-type protein, GTPase domain At12D1_24490 PF02881 SRP54-type protein, helical bundle domain At12D1_24490 PF02978 Signal peptide binding domain At12D1_24500 PF01817 Chorismate mutase type II At12D1_24500 PF02153 Prephenate dehydrogenase At12D1_24510 PF00886 Ribosomal protein S16 At12D1_24520 PF01782 RimM N-terminal domain At12D1_24520 PF05239 PRC-barrel domain At12D1_24530 PF01746 tRNA (Guanine-1)-methyltransferase At12D1_24550 PF01245 Ribosomal protein L19 At12D1_24560 PF00005 ABC transporter At12D1_24560 PF00664 ABC transporter transmembrane region At12D1_24570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion At12D1_24570 PF00529 HlyD membrane-fusion protein of T1SS At12D1_24590 PF07690 Major Facilitator Superfamily At12D1_24600 PF00330 Aconitase family (aconitate hydratase) At12D1_24630 PF01435 Peptidase family M48 At12D1_24640 PF00005 ABC transporter At12D1_24650 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_24660 PF01547 Bacterial extracellular solute-binding protein At12D1_24700 PF04204 Homoserine O-succinyltransferase At12D1_24710 PF01263 Aldose 1-epimerase At12D1_24720 PF00912 Transglycosylase At12D1_24730 PF00348 Polyprenyl synthetase At12D1_24740 PF13488 Glycine zipper At12D1_24740 PF00691 OmpA family At12D1_24750 PF04551 GcpE protein At12D1_24760 PF07690 Major Facilitator Superfamily At12D1_24770 PF00455 DeoR C terminal sensor domain At12D1_24770 PF08220 DeoR-like helix-turn-helix domain At12D1_24780 PF00364 Biotin-requiring enzyme At12D1_24780 PF00289 Biotin carboxylase, N-terminal domain At12D1_24780 PF02785 Biotin carboxylase C-terminal domain At12D1_24780 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain At12D1_24780 PF02436 Conserved carboxylase domain At12D1_24780 PF00682 HMGL-like At12D1_24790 PF00072 Response regulator receiver domain At12D1_24790 PF00196 Bacterial regulatory proteins, luxR family At12D1_24800 PF00005 ABC transporter At12D1_24800 PF00664 ABC transporter transmembrane region At12D1_24820 PF10091 Putative glucoamylase At12D1_24820 PF06165 Glycosyltransferase family 36 At12D1_24820 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain At12D1_24830 PF01546 Peptidase family M20/M25/M40 At12D1_24830 PF07687 Peptidase dimerisation domain At12D1_24850 PF01266 FAD dependent oxidoreductase At12D1_24860 PF00291 Pyridoxal-phosphate dependent enzyme At12D1_24870 PF00920 Dehydratase family At12D1_24880 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase At12D1_24880 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase At12D1_24890 PF01370 NAD dependent epimerase/dehydratase family At12D1_24900 PF02913 FAD linked oxidases, C-terminal domain At12D1_24900 PF01565 FAD binding domain At12D1_24910 PF00392 Bacterial regulatory proteins, gntR family At12D1_24930 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component At12D1_24940 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component At12D1_24950 PF03480 Bacterial extracellular solute-binding protein, family 7 At12D1_24960 PF16177 Acetyl-coenzyme A synthetase N-terminus At12D1_24960 PF00501 AMP-binding enzyme At12D1_24960 PF13193 AMP-binding enzyme C-terminal domain At12D1_24980 PF01168 Alanine racemase, N-terminal domain At12D1_24990 PF13603 Leucyl-tRNA synthetase, Domain 2 At12D1_24990 PF08264 Anticodon-binding domain of tRNA At12D1_24990 PF00133 tRNA synthetases class I (I, L, M and V) At12D1_25020 PF00037 4Fe-4S binding domain At12D1_25020 PF11953 Domain of unknown function (DUF3470) At12D1_25030 PF00579 tRNA synthetases class I (W and Y) At12D1_25030 PF01479 S4 domain At12D1_25050 PF01494 FAD binding domain At12D1_25070 PF00543 Nitrogen regulatory protein P-II At12D1_25080 PF00909 Ammonium Transporter Family At12D1_25090 PF17854 FtsK alpha domain At12D1_25090 PF09397 Ftsk gamma domain At12D1_25090 PF13491 4TM region of DNA translocase FtsK/SpoIIIE At12D1_25090 PF01580 FtsK/SpoIIIE family At12D1_25100 PF03548 Outer membrane lipoprotein carrier protein LolA At12D1_25130 PF00486 Transcriptional regulatory protein, C terminal At12D1_25130 PF00072 Response regulator receiver domain At12D1_25150 PF02559 CarD-like/TRCF domain At12D1_25160 PF05088 Bacterial NAD-glutamate dehydrogenase At12D1_25170 PF11700 Vacuole effluxer Atg22 like At12D1_25180 PF07879 PHB/PHA accumulation regulator DNA-binding domain At12D1_25180 PF05233 PHB accumulation regulatory domain At12D1_25190 PF02803 Thiolase, C-terminal domain At12D1_25190 PF00108 Thiolase, N-terminal domain At12D1_25220 PF00210 Ferritin-like domain At12D1_25230 PF00293 NUDIX domain At12D1_25240 PF04748 Divergent polysaccharide deacetylase At12D1_25250 PF03572 Peptidase family S41 At12D1_25250 PF13180 PDZ domain At12D1_25270 PF02590 Predicted SPOUT methyltransferase At12D1_25290 PF01467 Cytidylyltransferase-like At12D1_25300 PF00171 Aldehyde dehydrogenase family At12D1_25310 PF00696 Amino acid kinase family At12D1_25310 PF01472 PUA domain At12D1_25320 PF01018 GTP1/OBG At12D1_25320 PF01926 50S ribosome-binding GTPase At12D1_25330 PF13302 Acetyltransferase (GNAT) domain At12D1_25350 PF01016 Ribosomal L27 protein At12D1_25360 PF00829 Ribosomal prokaryotic L21 protein At12D1_25400 PF03328 HpcH/HpaI aldolase/citrate lyase family At12D1_25420 PF00694 Aconitase C-terminal domain At12D1_25430 PF00180 Isocitrate/isopropylmalate dehydrogenase At12D1_25440 PF03150 Di-haem cytochrome c peroxidase At12D1_25450 PF07685 CobB/CobQ-like glutamine amidotransferase domain At12D1_25450 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain At12D1_25460 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases At12D1_25470 PF01888 CbiD At12D1_25480 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases At12D1_25500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases At12D1_25510 PF02571 Precorrin-6x reductase CbiJ/CobK At12D1_25520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases At12D1_25530 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases At12D1_25540 PF02570 Precorrin-8X methylmutase At12D1_25550 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain At12D1_25560 PF02514 CobN/Magnesium Chelatase At12D1_25570 PF07683 Cobalamin synthesis protein cobW C-terminal domain At12D1_25570 PF02492 CobW/HypB/UreG, nucleotide-binding domain At12D1_25590 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP At12D1_25590 PF12557 Cob(I)alamin adenosyltransferase N terminal At12D1_25600 PF07685 CobB/CobQ-like glutamine amidotransferase domain At12D1_25600 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain At12D1_25610 PF03186 CobD/Cbib protein At12D1_25620 PF00155 Aminotransferase class I and II At12D1_25630 PF13378 Enolase C-terminal domain-like At12D1_25630 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain At12D1_25640 PF05336 L-rhamnose mutarotase At12D1_25650 PF01232 Mannitol dehydrogenase Rossmann domain At12D1_25650 PF08125 Mannitol dehydrogenase C-terminal domain At12D1_25660 PF00107 Zinc-binding dehydrogenase At12D1_25660 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_25680 PF00248 Aldo/keto reductase family At12D1_25700 PF02653 Branched-chain amino acid transport system / permease component At12D1_25710 PF00005 ABC transporter At12D1_25720 PF00392 Bacterial regulatory proteins, gntR family At12D1_25720 PF07729 FCD domain At12D1_25730 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus At12D1_25730 PF08666 SAF domain At12D1_25740 PF01808 AICARFT/IMPCHase bienzyme At12D1_25740 PF02142 MGS-like domain At12D1_25760 PF01029 NusB family At12D1_25760 PF01189 16S rRNA methyltransferase RsmB/F At12D1_25770 PF01435 Peptidase family M48 At12D1_25790 PF02195 ParB-like nuclease domain At12D1_25790 PF17762 HTH domain found in ParB protein At12D1_25800 PF13614 AAA domain At12D1_25810 PF02527 rRNA small subunit methyltransferase G At12D1_25820 PF01134 Glucose inhibited division protein A At12D1_25820 PF13932 GidA associated domain At12D1_25830 PF01926 50S ribosome-binding GTPase At12D1_25830 PF12631 MnmE helical domain At12D1_25830 PF10396 GTP-binding protein TrmE N-terminus At12D1_25840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain At12D1_25840 PF07497 Rho termination factor, RNA-binding domain At12D1_25840 PF07498 Rho termination factor, N-terminal domain At12D1_25860 PF01208 Uroporphyrinogen decarboxylase (URO-D) At12D1_25870 PF03618 Kinase/pyrophosphorylase At12D1_25880 PF02545 Maf-like protein At12D1_25890 PF08501 Shikimate dehydrogenase substrate binding domain At12D1_25890 PF01488 Shikimate / quinate 5-dehydrogenase At12D1_25890 PF18317 Shikimate 5'-dehydrogenase C-terminal domain At12D1_25900 PF01121 Dephospho-CoA kinase At12D1_25910 PF00929 Exonuclease At12D1_25920 PF02556 Preprotein translocase subunit SecB At12D1_25930 PF04186 FxsA cytoplasmic membrane protein At12D1_25950 PF06725 3D domain At12D1_25950 PF03562 MltA specific insert domain At12D1_25980 PF01751 Toprim domain At12D1_25980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_25980 PF00986 DNA gyrase B subunit, carboxyl terminus At12D1_25980 PF00204 DNA gyrase B At12D1_26000 PF01557 Fumarylacetoacetate (FAA) hydrolase family At12D1_26030 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase At12D1_26040 PF00291 Pyridoxal-phosphate dependent enzyme At12D1_26050 PF00290 Tryptophan synthase alpha chain At12D1_26060 PF01039 Carboxyl transferase domain At12D1_26070 PF02875 Mur ligase family, glutamate ligase domain At12D1_26070 PF08245 Mur ligase middle domain At12D1_26080 PF00085 Thioredoxin At12D1_26090 PF13361 UvrD-like helicase C-terminal domain At12D1_26090 PF00580 UvrD/REP helicase N-terminal domain At12D1_26090 PF12705 PD-(D/E)XK nuclease superfamily At12D1_26110 PF12804 MobA-like NTP transferase domain At12D1_26120 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE At12D1_26130 PF00512 His Kinase A (phospho-acceptor) domain At12D1_26130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_26140 PF05221 S-adenosyl-L-homocysteine hydrolase At12D1_26140 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain At12D1_26150 PF00381 PTS HPr component phosphorylation site At12D1_26160 PF03830 PTS system sorbose subfamily IIB component At12D1_26160 PF03610 PTS system fructose IIA component At12D1_26170 PF07475 HPr Serine kinase C-terminal domain At12D1_26170 PF02603 HPr Serine kinase N terminus At12D1_26180 PF00512 His Kinase A (phospho-acceptor) domain At12D1_26180 PF13755 Sensor N-terminal transmembrane domain At12D1_26180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_26180 PF00672 HAMP domain At12D1_26180 PF13756 Stimulus-sensing domain At12D1_26190 PF00072 Response regulator receiver domain At12D1_26190 PF00486 Transcriptional regulatory protein, C terminal At12D1_26200 PF01293 Phosphoenolpyruvate carboxykinase At12D1_26210 PF00472 RF-1 domain At12D1_26220 PF01476 LysM domain At12D1_26220 PF04972 BON domain At12D1_26230 PF00485 Phosphoribulokinase / Uridine kinase family At12D1_26240 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase At12D1_26250 PF00977 Histidine biosynthesis protein At12D1_26260 PF00977 Histidine biosynthesis protein At12D1_26270 PF00117 Glutamine amidotransferase class-I At12D1_26290 PF00475 Imidazoleglycerol-phosphate dehydratase At12D1_26300 PF00227 Proteasome subunit At12D1_26310 PF00004 ATPase family associated with various cellular activities (AAA) At12D1_26310 PF07724 AAA domain (Cdc48 subfamily) At12D1_26310 PF10431 C-terminal, D2-small domain, of ClpB protein At12D1_26330 PF01274 Malate synthase At12D1_26360 PF00072 Response regulator receiver domain At12D1_26370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_26370 PF00512 His Kinase A (phospho-acceptor) domain At12D1_26380 PF08482 ATP-dependent helicase C-terminal At12D1_26380 PF04408 Helicase associated domain (HA2) At12D1_26380 PF00271 Helicase conserved C-terminal domain At12D1_26380 PF00270 DEAD/DEAH box helicase At12D1_26400 PF13276 HTH-like domain At12D1_26400 PF13683 Integrase core domain At12D1_26410 PF01527 Transposase At12D1_26420 PF16124 RecQ zinc-binding At12D1_26420 PF09382 RQC domain At12D1_26420 PF00271 Helicase conserved C-terminal domain At12D1_26420 PF00270 DEAD/DEAH box helicase At12D1_26420 PF00570 HRDC domain At12D1_26430 PF00480 ROK family At12D1_26440 PF13407 Periplasmic binding protein domain At12D1_26450 PF02653 Branched-chain amino acid transport system / permease component At12D1_26460 PF00005 ABC transporter At12D1_26470 PF00485 Phosphoribulokinase / Uridine kinase family At12D1_26480 PF00462 Glutaredoxin At12D1_26490 PF07972 NrdI Flavodoxin like At12D1_26500 PF02867 Ribonucleotide reductase, barrel domain At12D1_26500 PF08343 Ribonucleotide reductase N-terminal At12D1_26500 PF00317 Ribonucleotide reductase, all-alpha domain At12D1_26510 PF00268 Ribonucleotide reductase, small chain At12D1_26530 PF02463 RecF/RecN/SMC N terminal domain At12D1_26540 PF00899 ThiF family At12D1_26540 PF00581 Rhodanese-like domain At12D1_26570 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain At12D1_26570 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain At12D1_26590 PF00294 pfkB family carbohydrate kinase At12D1_26610 PF08468 Methyltransferase small domain N-terminal At12D1_26610 PF05175 Methyltransferase small domain At12D1_26620 PF01138 3' exoribonuclease family, domain 1 At12D1_26620 PF03725 3' exoribonuclease family, domain 2 At12D1_26620 PF00575 S1 RNA binding domain At12D1_26620 PF00013 KH domain At12D1_26620 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain At12D1_26630 PF00312 Ribosomal protein S15 At12D1_26640 PF16198 tRNA pseudouridylate synthase B C-terminal domain At12D1_26640 PF01509 TruB family pseudouridylate synthase (N terminal domain) At12D1_26640 PF09157 Pseudouridine synthase II TruB, C-terminal At12D1_26650 PF02033 Ribosome-binding factor A At12D1_26660 PF03144 Elongation factor Tu domain 2 At12D1_26660 PF11987 Translation-initiation factor 2 At12D1_26660 PF04760 Translation initiation factor IF-2, N-terminal region At12D1_26660 PF08364 Bacterial translation initiation factor IF-2 associated region At12D1_26660 PF00009 Elongation factor Tu GTP binding domain At12D1_26680 PF00575 S1 RNA binding domain At12D1_26680 PF08529 NusA N-terminal domain At12D1_26680 PF13184 NusA-like KH domain At12D1_26690 PF02576 RimP N-terminal domain At12D1_26690 PF17384 RimP C-terminal SH3 domain At12D1_26700 PF05977 Transmembrane secretion effector At12D1_26710 PF13406 Transglycosylase SLT domain At12D1_26720 PF13662 Toprim domain At12D1_26720 PF02132 RecR protein At12D1_26740 PF02575 YbaB/EbfC DNA-binding family At12D1_26750 PF12170 DNA polymerase III tau subunit V interacting with alpha At12D1_26750 PF12169 DNA polymerase III subunits gamma and tau domain III At12D1_26750 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding At12D1_26770 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain At12D1_26770 PF00293 NUDIX domain At12D1_26770 PF09297 NADH pyrophosphatase zinc ribbon domain At12D1_26780 PF01817 Chorismate mutase type II At12D1_26780 PF00800 Prephenate dehydratase At12D1_26790 PF02348 Cytidylyltransferase At12D1_26800 PF00034 Cytochrome c At12D1_26810 PF02397 Bacterial sugar transferase At12D1_26820 PF00912 Transglycosylase At12D1_26820 PF00905 Penicillin binding protein transpeptidase domain At12D1_26830 PF04073 Aminoacyl-tRNA editing domain At12D1_26840 PF00313 'Cold-shock' DNA-binding domain At12D1_26850 PF01546 Peptidase family M20/M25/M40 At12D1_26850 PF07687 Peptidase dimerisation domain At12D1_26860 PF01047 MarR family At12D1_26870 PF00476 DNA polymerase family A At12D1_26870 PF01612 3'-5' exonuclease At12D1_26870 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain At12D1_26870 PF01367 5'-3' exonuclease, C-terminal SAM fold At12D1_26880 PF01783 Ribosomal L32p protein family At12D1_26890 PF02743 Cache domain At12D1_26890 PF00512 His Kinase A (phospho-acceptor) domain At12D1_26890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_26900 PF02954 Bacterial regulatory protein, Fis family At12D1_26900 PF00072 Response regulator receiver domain At12D1_26900 PF00158 Sigma-54 interaction domain At12D1_26910 PF03401 Tripartite tricarboxylate transporter family receptor At12D1_26920 PF07331 Tripartite tricarboxylate transporter TctB family At12D1_26930 PF01970 Tripartite tricarboxylate transporter TctA family At12D1_26940 PF04102 SlyX At12D1_26960 PF01556 DnaJ C terminal domain At12D1_26960 PF00226 DnaJ domain At12D1_26960 PF00684 DnaJ central domain At12D1_26970 PF00012 Hsp70 protein At12D1_26990 PF01625 Peptide methionine sulfoxide reductase At12D1_27040 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region At12D1_27050 PF01048 Phosphorylase superfamily At12D1_27060 PF01791 DeoC/LacD family aldolase At12D1_27070 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain At12D1_27070 PF00591 Glycosyl transferase family, a/b domain At12D1_27070 PF02885 Glycosyl transferase family, helical bundle domain At12D1_27100 PF00962 Adenosine/AMP deaminase At12D1_27110 PF01676 Metalloenzyme superfamily At12D1_27130 PF03626 Prokaryotic Cytochrome C oxidase subunit IV At12D1_27140 PF00510 Cytochrome c oxidase subunit III At12D1_27150 PF00115 Cytochrome C and Quinol oxidase polypeptide I At12D1_27160 PF00116 Cytochrome C oxidase subunit II, periplasmic domain At12D1_27160 PF06481 COX Aromatic Rich Motif At12D1_27170 PF00083 Sugar (and other) transporter At12D1_27170 PF07690 Major Facilitator Superfamily At12D1_27180 PF01493 GXGXG motif At12D1_27180 PF01645 Conserved region in glutamate synthase At12D1_27180 PF04898 Glutamate synthase central domain At12D1_27180 PF00310 Glutamine amidotransferases class-II At12D1_27190 PF00175 Oxidoreductase NAD-binding domain At12D1_27190 PF00258 Flavodoxin At12D1_27190 PF00667 FAD binding domain At12D1_27230 PF00109 Beta-ketoacyl synthase, N-terminal domain At12D1_27230 PF02801 Beta-ketoacyl synthase, C-terminal domain At12D1_27240 PF07977 FabA-like domain At12D1_27260 PF03458 UPF0126 domain At12D1_27280 PF06912 Protein of unknown function (DUF1275) At12D1_27300 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_27310 PF00005 ABC transporter At12D1_27320 PF00392 Bacterial regulatory proteins, gntR family At12D1_27320 PF07702 UTRA domain At12D1_27330 PF01618 MotA/TolQ/ExbB proton channel family At12D1_27340 PF02472 Biopolymer transport protein ExbD/TolR At12D1_27360 PF02615 Malate/L-lactate dehydrogenase At12D1_27390 PF00625 Guanylate kinase At12D1_27400 PF07969 Amidohydrolase family At12D1_27410 PF06299 Protein of unknown function (DUF1045) At12D1_27420 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_27430 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_27450 PF00005 ABC transporter At12D1_27470 PF00005 ABC transporter At12D1_27480 PF00005 ABC transporter At12D1_27490 PF06007 Phosphonate metabolism protein PhnJ At12D1_27510 PF05861 Bacterial phosphonate metabolism protein (PhnI) At12D1_27520 PF05845 Bacterial phosphonate metabolism protein (PhnH) At12D1_27530 PF06754 Phosphonate metabolism protein PhnG At12D1_27540 PF07702 UTRA domain At12D1_27540 PF00392 Bacterial regulatory proteins, gntR family At12D1_27550 PF05173 Dihydrodipicolinate reductase, C-terminus At12D1_27550 PF01113 Dihydrodipicolinate reductase, N-terminus At12D1_27560 PF02685 Glucokinase At12D1_27570 PF02142 MGS-like domain At12D1_27580 PF03411 Penicillin-insensitive murein endopeptidase At12D1_27590 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_27600 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_27610 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_27610 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_27620 PF00005 ABC transporter At12D1_27620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_27630 PF01266 FAD dependent oxidoreductase At12D1_27640 PF00120 Glutamine synthetase, catalytic domain At12D1_27650 PF01266 FAD dependent oxidoreductase At12D1_27670 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_27680 PF00005 ABC transporter At12D1_27690 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_27700 PF04069 Substrate binding domain of ABC-type glycine betaine transport system At12D1_27720 PF02082 Transcriptional regulator At12D1_27730 PF13416 Bacterial extracellular solute-binding protein At12D1_27740 PF01435 Peptidase family M48 At12D1_27750 PF05987 Bacterial protein of unknown function (DUF898) At12D1_27760 PF00171 Aldehyde dehydrogenase family At12D1_27770 PF03466 LysR substrate binding domain At12D1_27770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_27780 PF00892 EamA-like transporter family At12D1_27810 PF00877 NlpC/P60 family At12D1_27830 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain At12D1_27830 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family At12D1_27840 PF02789 Cytosol aminopeptidase family, N-terminal domain At12D1_27840 PF00883 Cytosol aminopeptidase family, catalytic domain At12D1_27880 PF00437 Type II/IV secretion system protein At12D1_27910 PF04972 BON domain At12D1_27910 PF00263 Bacterial type II and III secretion system protein At12D1_27910 PF13629 Pilus formation protein N terminal region At12D1_27980 PF00117 Glutamine amidotransferase class-I At12D1_27990 PF07411 Domain of unknown function (DUF1508) At12D1_28000 PF01183 Glycosyl hydrolases family 25 At12D1_28010 PF00892 EamA-like transporter family At12D1_28020 PF00155 Aminotransferase class I and II At12D1_28020 PF00392 Bacterial regulatory proteins, gntR family At12D1_28050 PF07992 Pyridine nucleotide-disulphide oxidoreductase At12D1_28080 PF00679 Elongation factor G C-terminus At12D1_28080 PF06421 GTP-binding protein LepA C-terminus At12D1_28080 PF00009 Elongation factor Tu GTP binding domain At12D1_28080 PF03144 Elongation factor Tu domain 2 At12D1_28090 PF00795 Carbon-nitrogen hydrolase At12D1_28150 PF02311 AraC-like ligand binding domain At12D1_28150 PF12833 Helix-turn-helix domain At12D1_28160 PF03480 Bacterial extracellular solute-binding protein, family 7 At12D1_28210 PF05198 Translation initiation factor IF-3, N-terminal domain At12D1_28210 PF00707 Translation initiation factor IF-3, C-terminal domain At12D1_28220 PF01632 Ribosomal protein L35 At12D1_28230 PF00453 Ribosomal protein L20 At12D1_28250 PF01409 tRNA synthetases class II core domain (F) At12D1_28250 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain At12D1_28260 PF01588 Putative tRNA binding domain At12D1_28260 PF03483 B3/4 domain At12D1_28260 PF03484 tRNA synthetase B5 domain At12D1_28260 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain At12D1_28260 PF03147 Ferredoxin-fold anticodon binding domain At12D1_28270 PF00248 Aldo/keto reductase family At12D1_28280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_28280 PF03466 LysR substrate binding domain At12D1_28310 PF01965 DJ-1/PfpI family At12D1_28310 PF12833 Helix-turn-helix domain At12D1_28330 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_28330 PF02894 Oxidoreductase family, C-terminal alpha/beta domain At12D1_28360 PF02601 Exonuclease VII, large subunit At12D1_28360 PF13742 OB-fold nucleic acid binding domain At12D1_28370 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain At12D1_28370 PF13378 Enolase C-terminal domain-like At12D1_28380 PF07729 FCD domain At12D1_28380 PF00392 Bacterial regulatory proteins, gntR family At12D1_28390 PF01047 MarR family At12D1_28400 PF00892 EamA-like transporter family At12D1_28410 PF02073 Thermophilic metalloprotease (M29) At12D1_28420 PF04073 Aminoacyl-tRNA editing domain At12D1_28430 PF03960 ArsC family At12D1_28470 PF00440 Bacterial regulatory proteins, tetR family At12D1_28490 PF00117 Glutamine amidotransferase class-I At12D1_28490 PF00958 GMP synthase C terminal domain At12D1_28520 PF03073 TspO/MBR family At12D1_28570 PF01189 16S rRNA methyltransferase RsmB/F At12D1_28570 PF01029 NusB family At12D1_28580 PF03330 Lytic transglycolase At12D1_28600 PF08331 Domain of unknown function (DUF1730) At12D1_28610 PF13417 Glutathione S-transferase, N-terminal domain At12D1_28610 PF00043 Glutathione S-transferase, C-terminal domain At12D1_28620 PF02673 Bacitracin resistance protein BacA At12D1_28650 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family At12D1_28670 PF00398 Ribosomal RNA adenine dimethylase At12D1_28680 PF02767 DNA polymerase III beta subunit, central domain At12D1_28680 PF02768 DNA polymerase III beta subunit, C-terminal domain At12D1_28680 PF00712 DNA polymerase III beta subunit, N-terminal domain At12D1_28690 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases At12D1_28700 PF02021 Uncharacterised protein family UPF0102 At12D1_28710 PF12464 Maltose acetyltransferase At12D1_28710 PF14602 Hexapeptide repeat of succinyl-transferase At12D1_28720 PF13416 Bacterial extracellular solute-binding protein At12D1_28730 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_28740 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_28750 PF00005 ABC transporter At12D1_28770 PF02951 Prokaryotic glutathione synthetase, N-terminal domain At12D1_28770 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain At12D1_28780 PF13335 Magnesium chelatase, subunit ChlI C-terminal At12D1_28780 PF01078 Magnesium chelatase, subunit ChlI At12D1_28790 PF00291 Pyridoxal-phosphate dependent enzyme At12D1_28800 PF01810 LysE type translocator At12D1_28810 PF00692 dUTPase At12D1_28820 PF16658 Class II release factor RF3, C-terminal domain At12D1_28820 PF03144 Elongation factor Tu domain 2 At12D1_28820 PF00009 Elongation factor Tu GTP binding domain At12D1_28830 PF04127 DNA / pantothenate metabolism flavoprotein At12D1_28830 PF02441 Flavoprotein At12D1_28860 PF03109 ABC1 family At12D1_28870 PF01209 ubiE/COQ5 methyltransferase family At12D1_28880 PF06827 Zinc finger found in FPG and IleRS At12D1_28880 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain At12D1_28880 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain At12D1_28890 PF00378 Enoyl-CoA hydratase/isomerase At12D1_28900 PF01649 Ribosomal protein S20 At12D1_28960 PF13649 Methyltransferase domain At12D1_29000 PF00313 'Cold-shock' DNA-binding domain At12D1_29040 PF13458 Periplasmic binding protein At12D1_29050 PF02653 Branched-chain amino acid transport system / permease component At12D1_29060 PF02653 Branched-chain amino acid transport system / permease component At12D1_29070 PF12399 Branched-chain amino acid ATP-binding cassette transporter At12D1_29070 PF00005 ABC transporter At12D1_29080 PF09383 NIL domain At12D1_29080 PF00005 ABC transporter At12D1_29090 PF00795 Carbon-nitrogen hydrolase At12D1_29100 PF00465 Iron-containing alcohol dehydrogenase At12D1_29110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_29120 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_29130 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_29130 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_29140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_29140 PF00005 ABC transporter At12D1_29150 PF08220 DeoR-like helix-turn-helix domain At12D1_29150 PF00455 DeoR C terminal sensor domain At12D1_29160 PF01546 Peptidase family M20/M25/M40 At12D1_29190 PF00459 Inositol monophosphatase family At12D1_29200 PF06751 Ethanolamine ammonia lyase large subunit (EutB) At12D1_29210 PF05985 Ethanolamine ammonia-lyase light chain (EutC) At12D1_29220 PF00999 Sodium/hydrogen exchanger family At12D1_29230 PF13649 Methyltransferase domain At12D1_29250 PF01266 FAD dependent oxidoreductase At12D1_29260 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_29260 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_29270 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_29280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_29290 PF01266 FAD dependent oxidoreductase At12D1_29300 PF00106 short chain dehydrogenase At12D1_29300 PF00300 Histidine phosphatase superfamily (branch 1) At12D1_29320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_29320 PF00005 ABC transporter At12D1_29330 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain At12D1_29330 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase At12D1_29340 PF08448 PAS fold At12D1_29340 PF00990 Diguanylate cyclase, GGDEF domain At12D1_29350 PF07690 Major Facilitator Superfamily At12D1_29370 PF17991 Thioredoxin like C-terminal domain At12D1_29370 PF02683 Cytochrome C biogenesis protein transmembrane region At12D1_29370 PF00578 AhpC/TSA family At12D1_29390 PF00561 alpha/beta hydrolase fold At12D1_29400 PF00072 Response regulator receiver domain At12D1_29400 PF00486 Transcriptional regulatory protein, C terminal At12D1_29410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_29410 PF00512 His Kinase A (phospho-acceptor) domain At12D1_29410 PF00672 HAMP domain At12D1_29420 PF02566 OsmC-like protein At12D1_29430 PF00171 Aldehyde dehydrogenase family At12D1_29440 PF06441 Epoxide hydrolase N terminus At12D1_29470 PF00561 alpha/beta hydrolase fold At12D1_29480 PF00210 Ferritin-like domain At12D1_29490 PF00384 Molybdopterin oxidoreductase At12D1_29500 PF08448 PAS fold At12D1_29500 PF13426 PAS domain At12D1_29500 PF00512 His Kinase A (phospho-acceptor) domain At12D1_29500 PF00072 Response regulator receiver domain At12D1_29500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_29510 PF00196 Bacterial regulatory proteins, luxR family At12D1_29510 PF00072 Response regulator receiver domain At12D1_29520 PF00072 Response regulator receiver domain At12D1_29520 PF00196 Bacterial regulatory proteins, luxR family At12D1_29540 PF00190 Cupin At12D1_29550 PF01494 FAD binding domain At12D1_29560 PF04199 Putative cyclase At12D1_29570 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component At12D1_29580 PF03480 Bacterial extracellular solute-binding protein, family 7 At12D1_29580 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component At12D1_29600 PF09339 IclR helix-turn-helix domain At12D1_29600 PF01614 Bacterial transcriptional regulator At12D1_29620 PF13193 AMP-binding enzyme C-terminal domain At12D1_29620 PF00501 AMP-binding enzyme At12D1_29670 PF01037 Lrp/AsnC ligand binding domain At12D1_29700 PF01594 AI-2E family transporter At12D1_29730 PF13520 Amino acid permease At12D1_29740 PF13520 Amino acid permease At12D1_29750 PF00873 AcrB/AcrD/AcrF family At12D1_29760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion At12D1_29780 PF02308 MgtC family At12D1_29790 PF01494 FAD binding domain At12D1_29810 PF13460 NAD(P)H-binding At12D1_29820 PF00873 AcrB/AcrD/AcrF family At12D1_29830 PF00529 HlyD membrane-fusion protein of T1SS At12D1_29830 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion At12D1_29840 PF00486 Transcriptional regulatory protein, C terminal At12D1_29840 PF00072 Response regulator receiver domain At12D1_29850 PF16736 Single Cache-like At12D1_29850 PF00989 PAS fold At12D1_29850 PF00512 His Kinase A (phospho-acceptor) domain At12D1_29850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_29860 PF07690 Major Facilitator Superfamily At12D1_29880 PF00860 Permease family At12D1_29900 PF00144 Beta-lactamase At12D1_29910 PF03466 LysR substrate binding domain At12D1_29910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_29990 PF01177 Asp/Glu/Hydantoin racemase At12D1_30000 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_30010 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_30030 PF00005 ABC transporter At12D1_30030 PF08402 TOBE domain At12D1_30080 PF08447 PAS fold At12D1_30080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_30080 PF13426 PAS domain At12D1_30110 PF13416 Bacterial extracellular solute-binding protein At12D1_30120 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_30130 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_30140 PF00005 ABC transporter At12D1_30140 PF17912 MalK OB fold domain At12D1_30150 PF00296 Luciferase-like monooxygenase At12D1_30160 PF09084 NMT1/THI5 like At12D1_30170 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_30180 PF00005 ABC transporter At12D1_30190 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_30200 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_30220 PF00005 ABC transporter At12D1_30220 PF17912 MalK OB fold domain At12D1_30230 PF06964 Alpha-L-arabinofuranosidase C-terminal domain At12D1_30260 PF00356 Bacterial regulatory proteins, lacI family At12D1_30280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain At12D1_30280 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain At12D1_30280 PF01842 ACT domain At12D1_30290 PF01261 Xylose isomerase-like TIM barrel At12D1_30300 PF03459 TOBE domain At12D1_30300 PF00005 ABC transporter At12D1_30300 PF17912 MalK OB fold domain At12D1_30310 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_30320 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_30330 PF13416 Bacterial extracellular solute-binding protein At12D1_30340 PF17938 Tetracyclin repressor-like, C-terminal domain At12D1_30340 PF00440 Bacterial regulatory proteins, tetR family At12D1_30350 PF02894 Oxidoreductase family, C-terminal alpha/beta domain At12D1_30350 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_30380 PF02894 Oxidoreductase family, C-terminal alpha/beta domain At12D1_30380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_30410 PF00313 'Cold-shock' DNA-binding domain At12D1_30430 PF01165 Ribosomal protein S21 At12D1_30490 PF00550 Phosphopantetheine attachment site At12D1_30500 PF07470 Glycosyl Hydrolase Family 88 At12D1_30510 PF00295 Glycosyl hydrolases family 28 At12D1_30540 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_30550 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_30560 PF02311 AraC-like ligand binding domain At12D1_30560 PF12833 Helix-turn-helix domain At12D1_30570 PF04909 Amidohydrolase At12D1_30580 PF13378 Enolase C-terminal domain-like At12D1_30580 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain At12D1_30590 PF00701 Dihydrodipicolinate synthetase family At12D1_30610 PF04962 KduI/IolB family At12D1_30620 PF01370 NAD dependent epimerase/dehydratase family At12D1_30630 PF00392 Bacterial regulatory proteins, gntR family At12D1_30630 PF07729 FCD domain At12D1_30660 PF00248 Aldo/keto reductase family At12D1_30670 PF17912 MalK OB fold domain At12D1_30670 PF00005 ABC transporter At12D1_30680 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_30690 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_30700 PF13416 Bacterial extracellular solute-binding protein At12D1_30720 PF12833 Helix-turn-helix domain At12D1_30720 PF02311 AraC-like ligand binding domain At12D1_30730 PF07690 Major Facilitator Superfamily At12D1_30740 PF00356 Bacterial regulatory proteins, lacI family At12D1_30750 PF16912 Glucose dehydrogenase C-terminus At12D1_30750 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_30780 PF00294 pfkB family carbohydrate kinase At12D1_30790 PF08013 Tagatose 6 phosphate kinase At12D1_30800 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_30810 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_30820 PF08402 TOBE domain At12D1_30820 PF00005 ABC transporter At12D1_30830 PF00005 ABC transporter At12D1_30830 PF17912 MalK OB fold domain At12D1_30840 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_30850 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_30870 PF01053 Cys/Met metabolism PLP-dependent enzyme At12D1_30900 PF00583 Acetyltransferase (GNAT) family At12D1_30910 PF01297 Zinc-uptake complex component A periplasmic At12D1_30920 PF00950 ABC 3 transport family At12D1_30930 PF00005 ABC transporter At12D1_30940 PF07683 Cobalamin synthesis protein cobW C-terminal domain At12D1_30940 PF02492 CobW/HypB/UreG, nucleotide-binding domain At12D1_30970 PF07683 Cobalamin synthesis protein cobW C-terminal domain At12D1_30970 PF02492 CobW/HypB/UreG, nucleotide-binding domain At12D1_30980 PF13416 Bacterial extracellular solute-binding protein At12D1_30990 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_31000 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_31010 PF00005 ABC transporter At12D1_31010 PF08402 TOBE domain At12D1_31030 PF03922 OmpW family At12D1_31070 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain At12D1_31070 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain At12D1_31080 PF03466 LysR substrate binding domain At12D1_31080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_31090 PF13407 Periplasmic binding protein domain At12D1_31100 PF02653 Branched-chain amino acid transport system / permease component At12D1_31110 PF00005 ABC transporter At12D1_31120 PF00440 Bacterial regulatory proteins, tetR family At12D1_31120 PF08361 MAATS-type transcriptional repressor, C-terminal region At12D1_31130 PF00873 AcrB/AcrD/AcrF family At12D1_31140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion At12D1_31140 PF00529 HlyD membrane-fusion protein of T1SS At12D1_31150 PF17151 Periplasmic sensor domain At12D1_31150 PF00990 Diguanylate cyclase, GGDEF domain At12D1_31160 PF05899 Protein of unknown function (DUF861) At12D1_31160 PF07883 Cupin domain At12D1_31180 PF00563 EAL domain At12D1_31180 PF00990 Diguanylate cyclase, GGDEF domain At12D1_31180 PF08448 PAS fold At12D1_31180 PF08447 PAS fold At12D1_31190 PF02615 Malate/L-lactate dehydrogenase At12D1_31200 PF01580 FtsK/SpoIIIE family At12D1_31200 PF17854 FtsK alpha domain At12D1_31200 PF13491 4TM region of DNA translocase FtsK/SpoIIIE At12D1_31200 PF09397 Ftsk gamma domain At12D1_31210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_31220 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_31230 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_31240 PF00005 ABC transporter At12D1_31240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_31250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_31250 PF00005 ABC transporter At12D1_31260 PF00266 Aminotransferase class-V At12D1_31280 PF12833 Helix-turn-helix domain At12D1_31290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily At12D1_31300 PF00920 Dehydratase family At12D1_31310 PF13407 Periplasmic binding protein domain At12D1_31320 PF00005 ABC transporter At12D1_31330 PF02653 Branched-chain amino acid transport system / permease component At12D1_31340 PF02653 Branched-chain amino acid transport system / permease component At12D1_31350 PF07729 FCD domain At12D1_31350 PF00392 Bacterial regulatory proteins, gntR family At12D1_31360 PF07690 Major Facilitator Superfamily At12D1_31380 PF01209 ubiE/COQ5 methyltransferase family At12D1_31390 PF01336 OB-fold nucleic acid binding domain At12D1_31390 PF02811 PHP domain At12D1_31390 PF07733 Bacterial DNA polymerase III alpha NTPase domain At12D1_31390 PF14579 Helix-hairpin-helix motif At12D1_31390 PF17657 Bacterial DNA polymerase III alpha subunit finger domain At12D1_31430 PF13660 Domain of unknown function (DUF4147) At12D1_31430 PF05161 MOFRL family At12D1_31450 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_31450 PF02894 Oxidoreductase family, C-terminal alpha/beta domain At12D1_31470 PF03459 TOBE domain At12D1_31470 PF17912 MalK OB fold domain At12D1_31470 PF00005 ABC transporter At12D1_31480 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_31490 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_31500 PF01547 Bacterial extracellular solute-binding protein At12D1_31520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_31540 PF01425 Amidase At12D1_31550 PF00563 EAL domain At12D1_31550 PF08447 PAS fold At12D1_31550 PF00990 Diguanylate cyclase, GGDEF domain At12D1_31550 PF08448 PAS fold At12D1_31580 PF03776 Septum formation topological specificity factor MinE At12D1_31590 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain At12D1_31600 PF03775 Septum formation inhibitor MinC, C-terminal domain At12D1_31600 PF05209 Septum formation inhibitor MinC, N-terminal domain At12D1_31610 PF13419 Haloacid dehalogenase-like hydrolase At12D1_31620 PF00392 Bacterial regulatory proteins, gntR family At12D1_31620 PF07729 FCD domain At12D1_31630 PF03480 Bacterial extracellular solute-binding protein, family 7 At12D1_31650 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component At12D1_31660 PF00107 Zinc-binding dehydrogenase At12D1_31660 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_31670 PF03786 D-mannonate dehydratase (UxuA) At12D1_31690 PF00171 Aldehyde dehydrogenase family At12D1_31710 PF03480 Bacterial extracellular solute-binding protein, family 7 At12D1_31720 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component At12D1_31730 PF00296 Luciferase-like monooxygenase At12D1_31760 PF00043 Glutathione S-transferase, C-terminal domain At12D1_31760 PF02798 Glutathione S-transferase, N-terminal domain At12D1_31770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_31770 PF00005 ABC transporter At12D1_31780 PF03841 L-seryl-tRNA selenium transferase At12D1_31810 PF01979 Amidohydrolase family At12D1_31820 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_31820 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_31830 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_31840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_31850 PF13439 Glycosyltransferase Family 4 At12D1_31850 PF00534 Glycosyl transferases group 1 At12D1_31860 PF02563 Polysaccharide biosynthesis/export protein At12D1_31880 PF00873 AcrB/AcrD/AcrF family At12D1_31910 PF01613 Flavin reductase like domain At12D1_31920 PF00248 Aldo/keto reductase family At12D1_31930 PF00296 Luciferase-like monooxygenase At12D1_31950 PF00005 ABC transporter At12D1_31950 PF08402 TOBE domain At12D1_31960 PF01547 Bacterial extracellular solute-binding protein At12D1_31970 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_31980 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_31990 PF01055 Glycosyl hydrolases family 31 At12D1_32010 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_32020 PF09084 NMT1/THI5 like At12D1_32030 PF02110 Hydroxyethylthiazole kinase family At12D1_32040 PF02581 Thiamine monophosphate synthase At12D1_32050 PF08543 Phosphomethylpyrimidine kinase At12D1_32060 PF01037 Lrp/AsnC ligand binding domain At12D1_32070 PF00842 Alanine racemase, C-terminal domain At12D1_32070 PF01168 Alanine racemase, N-terminal domain At12D1_32080 PF01266 FAD dependent oxidoreductase At12D1_32110 PF02954 Bacterial regulatory protein, Fis family At12D1_32110 PF00072 Response regulator receiver domain At12D1_32110 PF00158 Sigma-54 interaction domain At12D1_32120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_32120 PF00512 His Kinase A (phospho-acceptor) domain At12D1_32130 PF00375 Sodium:dicarboxylate symporter family At12D1_32140 PF00202 Aminotransferase class-III At12D1_32190 PF01270 Glycosyl hydrolases family 8 At12D1_32210 PF00535 Glycosyl transferase family 2 At12D1_32210 PF07238 PilZ domain At12D1_32210 PF03552 Cellulose synthase At12D1_32270 PF16363 GDP-mannose 4,6 dehydratase At12D1_32280 PF01370 NAD dependent epimerase/dehydratase family At12D1_32300 PF00196 Bacterial regulatory proteins, luxR family At12D1_32300 PF00072 Response regulator receiver domain At12D1_32330 PF00664 ABC transporter transmembrane region At12D1_32330 PF00005 ABC transporter At12D1_32340 PF00529 HlyD membrane-fusion protein of T1SS At12D1_32370 PF02563 Polysaccharide biosynthesis/export protein At12D1_32380 PF02397 Bacterial sugar transferase At12D1_32400 PF00202 Aminotransferase class-III At12D1_32410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_32410 PF00672 HAMP domain At12D1_32420 PF17969 L,D-transpeptidase C-terminal domain At12D1_32420 PF03734 L,D-transpeptidase catalytic domain At12D1_32460 PF02245 Methylpurine-DNA glycosylase (MPG) At12D1_32490 PF00356 Bacterial regulatory proteins, lacI family At12D1_32500 PF01547 Bacterial extracellular solute-binding protein At12D1_32510 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_32520 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_32530 PF03459 TOBE domain At12D1_32530 PF17912 MalK OB fold domain At12D1_32530 PF00005 ABC transporter At12D1_32550 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_32550 PF02894 Oxidoreductase family, C-terminal alpha/beta domain At12D1_32560 PF04055 Radical SAM superfamily At12D1_32570 PF01242 6-pyruvoyl tetrahydropterin synthase At12D1_32580 PF06508 Queuosine biosynthesis protein QueC At12D1_32610 PF02894 Oxidoreductase family, C-terminal alpha/beta domain At12D1_32610 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_32630 PF17912 MalK OB fold domain At12D1_32630 PF00005 ABC transporter At12D1_32640 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_32660 PF01547 Bacterial extracellular solute-binding protein At12D1_32690 PF01050 Mannose-6-phosphate isomerase At12D1_32690 PF00483 Nucleotidyl transferase At12D1_32700 PF01011 PQQ enzyme repeat At12D1_32710 PF03466 LysR substrate binding domain At12D1_32710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_32720 PF01515 Phosphate acetyl/butaryl transferase At12D1_32720 PF03949 Malic enzyme, NAD binding domain At12D1_32720 PF00390 Malic enzyme, N-terminal domain At12D1_32730 PF00497 Bacterial extracellular solute-binding proteins, family 3 At12D1_32740 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_32750 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_32760 PF00005 ABC transporter At12D1_32770 PF03972 MmgE/PrpD family At12D1_32790 PF13426 PAS domain At12D1_32790 PF08447 PAS fold At12D1_32790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_32800 PF01266 FAD dependent oxidoreductase At12D1_32830 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component At12D1_32840 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component At12D1_32850 PF03480 Bacterial extracellular solute-binding protein, family 7 At12D1_32860 PF07722 Peptidase C26 At12D1_32870 PF02653 Branched-chain amino acid transport system / permease component At12D1_32880 PF00005 ABC transporter At12D1_32890 PF13407 Periplasmic binding protein domain At12D1_32900 PF01546 Peptidase family M20/M25/M40 At12D1_32910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_32930 PF00005 ABC transporter At12D1_32930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_32950 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_32960 PF03466 LysR substrate binding domain At12D1_32960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_32970 PF01112 Asparaginase At12D1_33000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_33030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_33030 PF00005 ABC transporter At12D1_33050 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_33060 PF00196 Bacterial regulatory proteins, luxR family At12D1_33060 PF00072 Response regulator receiver domain At12D1_33070 PF03737 Aldolase/RraA At12D1_33080 PF01370 NAD dependent epimerase/dehydratase family At12D1_33090 PF00920 Dehydratase family At12D1_33100 PF00005 ABC transporter At12D1_33100 PF17912 MalK OB fold domain At12D1_33110 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_33120 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_33140 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_33140 PF02894 Oxidoreductase family, C-terminal alpha/beta domain At12D1_33150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain At12D1_33150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_33160 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_33160 PF02894 Oxidoreductase family, C-terminal alpha/beta domain At12D1_33170 PF00392 Bacterial regulatory proteins, gntR family At12D1_33170 PF07729 FCD domain At12D1_33190 PF00529 HlyD membrane-fusion protein of T1SS At12D1_33190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion At12D1_33200 PF00664 ABC transporter transmembrane region At12D1_33200 PF00005 ABC transporter At12D1_33240 PF12680 SnoaL-like domain At12D1_33240 PF08281 Sigma-70, region 4 At12D1_33240 PF04542 Sigma-70 region 2 At12D1_33250 PF00005 ABC transporter At12D1_33260 PF01032 FecCD transport family At12D1_33290 PF01209 ubiE/COQ5 methyltransferase family At12D1_33300 PF00127 Copper binding proteins, plastocyanin/azurin family At12D1_33310 PF00005 ABC transporter At12D1_33320 PF01032 FecCD transport family At12D1_33350 PF07687 Peptidase dimerisation domain At12D1_33350 PF01546 Peptidase family M20/M25/M40 At12D1_33360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain At12D1_33390 PF01968 Hydantoinase/oxoprolinase At12D1_33390 PF05378 Hydantoinase/oxoprolinase N-terminal region At12D1_33410 PF00171 Aldehyde dehydrogenase family At12D1_33420 PF00180 Isocitrate/isopropylmalate dehydrogenase At12D1_33430 PF00171 Aldehyde dehydrogenase family At12D1_33440 PF01266 FAD dependent oxidoreductase At12D1_33470 PF00202 Aminotransferase class-III At12D1_33490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_33500 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_33520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_33520 PF00005 ABC transporter At12D1_33530 PF01037 Lrp/AsnC ligand binding domain At12D1_33540 PF01266 FAD dependent oxidoreductase At12D1_33550 PF01266 FAD dependent oxidoreductase At12D1_33560 PF07992 Pyridine nucleotide-disulphide oxidoreductase At12D1_33560 PF04324 BFD-like [2Fe-2S] binding domain At12D1_33580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_33580 PF03466 LysR substrate binding domain At12D1_33610 PF00005 ABC transporter At12D1_33630 PF07687 Peptidase dimerisation domain At12D1_33630 PF01546 Peptidase family M20/M25/M40 At12D1_33640 PF00296 Luciferase-like monooxygenase At12D1_33650 PF00296 Luciferase-like monooxygenase At12D1_33660 PF02082 Transcriptional regulator At12D1_33680 PF01613 Flavin reductase like domain At12D1_33690 PF00296 Luciferase-like monooxygenase At12D1_33720 PF00581 Rhodanese-like domain At12D1_33740 PF00296 Luciferase-like monooxygenase At12D1_33750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain At12D1_33750 PF02770 Acyl-CoA dehydrogenase, middle domain At12D1_33750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain At12D1_33770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_33780 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_33790 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_33800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_33800 PF00005 ABC transporter At12D1_33810 PF00005 ABC transporter At12D1_33810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_33820 PF00248 Aldo/keto reductase family At12D1_33840 PF03466 LysR substrate binding domain At12D1_33840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_33860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_33880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_33890 PF01546 Peptidase family M20/M25/M40 At12D1_33890 PF07687 Peptidase dimerisation domain At12D1_33900 PF00296 Luciferase-like monooxygenase At12D1_33910 PF05368 NmrA-like family At12D1_33940 PF00296 Luciferase-like monooxygenase At12D1_33950 PF13378 Enolase C-terminal domain-like At12D1_33950 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain At12D1_33970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_33980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_33980 PF00005 ABC transporter At12D1_33990 PF00005 ABC transporter At12D1_33990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_34000 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_34000 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_34010 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_34030 PF07729 FCD domain At12D1_34030 PF00392 Bacterial regulatory proteins, gntR family At12D1_34050 PF00561 alpha/beta hydrolase fold At12D1_34060 PF00106 short chain dehydrogenase At12D1_34080 PF04273 Putative phosphatase (DUF442) At12D1_34080 PF00753 Metallo-beta-lactamase superfamily At12D1_34100 PF04143 Sulphur transport At12D1_34120 PF06415 BPG-independent PGAM N-terminus (iPGM_N) At12D1_34120 PF01676 Metalloenzyme superfamily At12D1_34130 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) At12D1_34130 PF00364 Biotin-requiring enzyme At12D1_34130 PF02817 e3 binding domain At12D1_34140 PF02779 Transketolase, pyrimidine binding domain At12D1_34140 PF02780 Transketolase, C-terminal domain At12D1_34150 PF00676 Dehydrogenase E1 component At12D1_34150 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal At12D1_34160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain At12D1_34160 PF02770 Acyl-CoA dehydrogenase, middle domain At12D1_34160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain At12D1_34170 PF00108 Thiolase, N-terminal domain At12D1_34170 PF02803 Thiolase, C-terminal domain At12D1_34180 PF01037 Lrp/AsnC ligand binding domain At12D1_34190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain At12D1_34190 PF02770 Acyl-CoA dehydrogenase, middle domain At12D1_34190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain At12D1_34200 PF01039 Carboxyl transferase domain At12D1_34210 PF02785 Biotin carboxylase C-terminal domain At12D1_34210 PF00289 Biotin carboxylase, N-terminal domain At12D1_34210 PF00364 Biotin-requiring enzyme At12D1_34210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain At12D1_34220 PF00682 HMGL-like At12D1_34240 PF02569 Pantoate-beta-alanine ligase At12D1_34250 PF02548 Ketopantoate hydroxymethyltransferase At12D1_34260 PF01261 Xylose isomerase-like TIM barrel At12D1_34270 PF00596 Class II Aldolase and Adducin N-terminal domain At12D1_34280 PF08220 DeoR-like helix-turn-helix domain At12D1_34280 PF00455 DeoR C terminal sensor domain At12D1_34290 PF13407 Periplasmic binding protein domain At12D1_34300 PF00005 ABC transporter At12D1_34310 PF02653 Branched-chain amino acid transport system / permease component At12D1_34320 PF02653 Branched-chain amino acid transport system / permease component At12D1_34330 PF05336 L-rhamnose mutarotase At12D1_34350 PF00561 alpha/beta hydrolase fold At12D1_34370 PF00990 Diguanylate cyclase, GGDEF domain At12D1_34370 PF08447 PAS fold At12D1_34370 PF00563 EAL domain At12D1_34370 PF08448 PAS fold At12D1_34390 PF00171 Aldehyde dehydrogenase family At12D1_34400 PF08713 DNA alkylation repair enzyme At12D1_34410 PF00005 ABC transporter At12D1_34420 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_34430 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_34460 PF00378 Enoyl-CoA hydratase/isomerase At12D1_34490 PF08241 Methyltransferase domain At12D1_34510 PF00795 Carbon-nitrogen hydrolase At12D1_34520 PF00462 Glutaredoxin At12D1_34540 PF08241 Methyltransferase domain At12D1_34570 PF00293 NUDIX domain At12D1_34580 PF00583 Acetyltransferase (GNAT) family At12D1_34580 PF13508 Acetyltransferase (GNAT) domain At12D1_34590 PF01960 ArgJ family At12D1_34610 PF02810 SEC-C motif At12D1_34610 PF07516 SecA Wing and Scaffold domain At12D1_34610 PF01043 SecA preprotein cross-linking domain At12D1_34610 PF07517 SecA DEAD-like domain At12D1_34620 PF00892 EamA-like transporter family At12D1_34630 PF01757 Acyltransferase family At12D1_34740 PF01943 Polysaccharide biosynthesis protein At12D1_34780 PF01757 Acyltransferase family At12D1_34800 PF13807 G-rich domain on putative tyrosine kinase At12D1_34800 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain At12D1_34800 PF02706 Chain length determinant protein At12D1_34840 PF00534 Glycosyl transferases group 1 At12D1_34840 PF13439 Glycosyltransferase Family 4 At12D1_34850 PF00534 Glycosyl transferases group 1 At12D1_34850 PF13439 Glycosyltransferase Family 4 At12D1_34880 PF01527 Transposase At12D1_34890 PF05717 IS66 Orf2 like protein At12D1_34900 PF13817 IS66 C-terminal element At12D1_34900 PF13007 Transposase C of IS166 homeodomain At12D1_34900 PF13005 zinc-finger binding domain of transposase IS66 At12D1_34900 PF03050 Transposase IS66 family At12D1_34930 PF01272 Transcription elongation factor, GreA/GreB, C-term At12D1_34930 PF03449 Transcription elongation factor, N-terminal At12D1_34940 PF00722 Glycosyl hydrolases family 16 At12D1_34940 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) At12D1_34960 PF03009 Glycerophosphoryl diester phosphodiesterase family At12D1_34970 PF17912 MalK OB fold domain At12D1_34970 PF03459 TOBE domain At12D1_34970 PF00005 ABC transporter At12D1_34980 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_34990 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_35010 PF01047 MarR family At12D1_35010 PF00480 ROK family At12D1_35060 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding At12D1_35090 PF01381 Helix-turn-helix At12D1_35120 PF01717 Cobalamin-independent synthase, Catalytic domain At12D1_35120 PF08267 Cobalamin-independent synthase, N-terminal domain At12D1_35130 PF00005 ABC transporter At12D1_35140 PF02653 Branched-chain amino acid transport system / permease component At12D1_35150 PF13407 Periplasmic binding protein domain At12D1_35170 PF16901 C-terminal domain of alpha-glycerophosphate oxidase At12D1_35170 PF01266 FAD dependent oxidoreductase At12D1_35200 PF00364 Biotin-requiring enzyme At12D1_35200 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain At12D1_35200 PF00289 Biotin carboxylase, N-terminal domain At12D1_35200 PF02785 Biotin carboxylase C-terminal domain At12D1_35230 PF02798 Glutathione S-transferase, N-terminal domain At12D1_35240 PF01039 Carboxyl transferase domain At12D1_35250 PF09856 Predicted transcriptional regulator (DUF2083) At12D1_35250 PF06114 IrrE N-terminal-like domain At12D1_35250 PF01381 Helix-turn-helix At12D1_35260 PF06029 AlkA N-terminal domain At12D1_35260 PF12833 Helix-turn-helix domain At12D1_35260 PF00730 HhH-GPD superfamily base excision DNA repair protein At12D1_35260 PF02805 Metal binding domain of Ada At12D1_35270 PF00749 tRNA synthetases class I (E and Q), catalytic domain At12D1_35290 PF00106 short chain dehydrogenase At12D1_35310 PF01923 Cobalamin adenosyltransferase At12D1_35330 PF01012 Electron transfer flavoprotein domain At12D1_35340 PF00766 Electron transfer flavoprotein FAD-binding domain At12D1_35340 PF01012 Electron transfer flavoprotein domain At12D1_35350 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain At12D1_35350 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain At12D1_35370 PF08534 Redoxin At12D1_35380 PF14698 Argininosuccinate lyase C-terminal At12D1_35380 PF00206 Lyase At12D1_35400 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain At12D1_35400 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain At12D1_35420 PF00072 Response regulator receiver domain At12D1_35430 PF00156 Phosphoribosyl transferase domain At12D1_35450 PF00005 ABC transporter At12D1_35490 PF04752 ChaC-like protein At12D1_35510 PF02153 Prephenate dehydrogenase At12D1_35520 PF00155 Aminotransferase class I and II At12D1_35530 PF01209 ubiE/COQ5 methyltransferase family At12D1_35540 PF16123 Hydroxyacylglutathione hydrolase C-terminus At12D1_35540 PF00753 Metallo-beta-lactamase superfamily At12D1_35570 PF00830 Ribosomal L28 family At12D1_35580 PF02592 Putative vitamin uptake transporter At12D1_35610 PF11775 Cobalamin biosynthesis protein CobT VWA domain At12D1_35610 PF06213 Cobalamin biosynthesis protein CobT At12D1_35620 PF07728 AAA domain (dynein-related subfamily) At12D1_35620 PF08406 CbbQ/NirQ/NorQ C-terminal At12D1_35620 PF12556 Cobaltochelatase CobS subunit N terminal At12D1_35630 PF00226 DnaJ domain At12D1_35640 PF01722 BolA-like protein At12D1_35660 PF01761 3-dehydroquinate synthase At12D1_35670 PF01202 Shikimate kinase At12D1_35690 PF02899 Phage integrase, N-terminal SAM-like domain At12D1_35690 PF00589 Phage integrase family At12D1_35700 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit At12D1_35710 PF03734 L,D-transpeptidase catalytic domain At12D1_35720 PF01206 Sulfurtransferase TusA At12D1_35720 PF00581 Rhodanese-like domain At12D1_35730 PF07683 Cobalamin synthesis protein cobW C-terminal domain At12D1_35730 PF02492 CobW/HypB/UreG, nucleotide-binding domain At12D1_35740 PF00768 D-alanyl-D-alanine carboxypeptidase At12D1_35740 PF07943 Penicillin-binding protein 5, C-terminal domain At12D1_35750 PF07687 Peptidase dimerisation domain At12D1_35750 PF01546 Peptidase family M20/M25/M40 At12D1_35770 PF00905 Penicillin binding protein transpeptidase domain At12D1_35770 PF00912 Transglycosylase At12D1_35770 PF06832 Penicillin-Binding Protein C-terminus Family At12D1_35780 PF17962 Bacterial macroglobulin domain 6 At12D1_35780 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain At12D1_35780 PF11974 Bacterial alpha-2-macroglobulin MG3 domain At12D1_35780 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain At12D1_35780 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain At12D1_35780 PF00207 Alpha-2-macroglobulin family At12D1_35780 PF01835 MG2 domain At12D1_35780 PF07703 Alpha-2-macroglobulin bait region domain At12D1_35780 PF07678 A-macroglobulin TED domain At12D1_35790 PF03966 Trm112p-like protein At12D1_35810 PF00085 Thioredoxin At12D1_35870 PF01842 ACT domain At12D1_35870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain At12D1_35870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain At12D1_35890 PF13505 Outer membrane protein beta-barrel domain At12D1_35900 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain At12D1_35900 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I At12D1_35900 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II At12D1_35900 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III At12D1_35910 PF01434 Peptidase family M41 At12D1_35910 PF00004 ATPase family associated with various cellular activities (AAA) At12D1_35910 PF17862 AAA+ lid domain At12D1_35910 PF06480 FtsH Extracellular At12D1_35920 PF01171 PP-loop family At12D1_35940 PF00691 OmpA family At12D1_35950 PF04052 TolB amino-terminal domain At12D1_35950 PF07676 WD40-like Beta Propeller Repeat At12D1_35970 PF02472 Biopolymer transport protein ExbD/TolR At12D1_35980 PF01618 MotA/TolQ/ExbB proton channel family At12D1_35990 PF03061 Thioesterase superfamily At12D1_36000 PF00293 NUDIX domain At12D1_36010 PF00293 NUDIX domain At12D1_36040 PF17864 RuvB AAA lid domain At12D1_36040 PF05496 Holliday junction DNA helicase RuvB P-loop domain At12D1_36040 PF05491 RuvB C-terminal winged helix domain At12D1_36050 PF01330 RuvA N terminal domain At12D1_36050 PF07499 RuvA, C-terminal domain At12D1_36060 PF02075 Crossover junction endodeoxyribonuclease RuvC At12D1_36070 PF02203 Tar ligand binding domain homologue At12D1_36070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_36070 PF00672 HAMP domain At12D1_36080 PF00296 Luciferase-like monooxygenase At12D1_36090 PF01709 Transcriptional regulator At12D1_36120 PF13277 YmdB-like protein At12D1_36140 PF01595 Cyclin M transmembrane N-terminal domain At12D1_36140 PF00571 CBS domain At12D1_36140 PF03471 Transporter associated domain At12D1_36170 PF00456 Transketolase, thiamine diphosphate binding domain At12D1_36170 PF02780 Transketolase, C-terminal domain At12D1_36170 PF02779 Transketolase, pyrimidine binding domain At12D1_36180 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain At12D1_36180 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain At12D1_36200 PF00999 Sodium/hydrogen exchanger family At12D1_36200 PF03471 Transporter associated domain At12D1_36210 PF00162 Phosphoglycerate kinase At12D1_36220 PF00274 Fructose-bisphosphate aldolase class-I At12D1_36270 PF01197 Ribosomal protein L31 At12D1_36280 PF00005 ABC transporter At12D1_36280 PF00664 ABC transporter transmembrane region At12D1_36290 PF00890 FAD binding domain At12D1_36310 PF01389 OmpA-like transmembrane domain At12D1_36310 PF00691 OmpA family At12D1_36330 PF00459 Inositol monophosphatase family At12D1_36390 PF00731 AIR carboxylase At12D1_36400 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain At12D1_36400 PF02222 ATP-grasp domain At12D1_36410 PF00444 Ribosomal protein L36 At12D1_36430 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) At12D1_36470 PF02887 Pyruvate kinase, alpha/beta domain At12D1_36470 PF00224 Pyruvate kinase, barrel domain At12D1_36480 PF05951 Bacterial protein of unknown function (DUF882) At12D1_36490 PF00072 Response regulator receiver domain At12D1_36490 PF02954 Bacterial regulatory protein, Fis family At12D1_36490 PF00158 Sigma-54 interaction domain At12D1_36500 PF01432 Peptidase family M3 At12D1_36500 PF08439 Oligopeptidase F At12D1_36510 PF01063 Amino-transferase class IV At12D1_36520 PF00990 Diguanylate cyclase, GGDEF domain At12D1_36520 PF00072 Response regulator receiver domain At12D1_36530 PF03435 Saccharopine dehydrogenase NADP binding domain At12D1_36530 PF16653 Saccharopine dehydrogenase C-terminal domain At12D1_36550 PF00149 Calcineurin-like phosphoesterase At12D1_36550 PF02872 5'-nucleotidase, C-terminal domain At12D1_36560 PF00762 Ferrochelatase At12D1_36570 PF01145 SPFH domain / Band 7 family At12D1_36570 PF16200 C-terminal region of band_7 At12D1_36590 PF00571 CBS domain At12D1_36590 PF01380 SIS domain At12D1_36620 PF00483 Nucleotidyl transferase At12D1_36630 PF13406 Transglycosylase SLT domain At12D1_36650 PF00486 Transcriptional regulatory protein, C terminal At12D1_36650 PF00072 Response regulator receiver domain At12D1_36660 PF00672 HAMP domain At12D1_36660 PF00512 His Kinase A (phospho-acceptor) domain At12D1_36660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_36670 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster At12D1_36670 PF07992 Pyridine nucleotide-disulphide oxidoreductase At12D1_36680 PF04898 Glutamate synthase central domain At12D1_36680 PF01645 Conserved region in glutamate synthase At12D1_36680 PF01493 GXGXG motif At12D1_36680 PF00310 Glutamine amidotransferases class-II At12D1_36690 PF01212 Beta-eliminating lyase At12D1_36700 PF00486 Transcriptional regulatory protein, C terminal At12D1_36700 PF00072 Response regulator receiver domain At12D1_36710 PF13493 Domain of unknown function (DUF4118) At12D1_36710 PF00512 His Kinase A (phospho-acceptor) domain At12D1_36710 PF02702 Osmosensitive K+ channel His kinase sensor domain At12D1_36710 PF13492 GAF domain At12D1_36710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_36720 PF02669 K+-transporting ATPase, c chain At12D1_36750 PF03814 Potassium-transporting ATPase A subunit At12D1_36770 PF17763 Glutaminase/Asparaginase C-terminal domain At12D1_36770 PF00710 Asparaginase, N-terminal At12D1_36780 PF00324 Amino acid permease At12D1_36790 PF00206 Lyase At12D1_36790 PF10415 Fumarase C C-terminus At12D1_36800 PF07729 FCD domain At12D1_36800 PF00392 Bacterial regulatory proteins, gntR family At12D1_36810 PF00873 AcrB/AcrD/AcrF family At12D1_36830 PF00529 HlyD membrane-fusion protein of T1SS At12D1_36830 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion At12D1_36840 PF00440 Bacterial regulatory proteins, tetR family At12D1_36840 PF13977 BetI-type transcriptional repressor, C-terminal At12D1_36850 PF00392 Bacterial regulatory proteins, gntR family At12D1_36850 PF07702 UTRA domain At12D1_36880 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_36890 PF00571 CBS domain At12D1_36890 PF00005 ABC transporter At12D1_36900 PF00221 Aromatic amino acid lyase At12D1_36910 PF00356 Bacterial regulatory proteins, lacI family At12D1_36930 PF02653 Branched-chain amino acid transport system / permease component At12D1_36940 PF00005 ABC transporter At12D1_36950 PF01261 Xylose isomerase-like TIM barrel At12D1_36960 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_36960 PF02894 Oxidoreductase family, C-terminal alpha/beta domain At12D1_36970 PF01261 Xylose isomerase-like TIM barrel At12D1_36980 PF01261 Xylose isomerase-like TIM barrel At12D1_36990 PF00701 Dihydrodipicolinate synthetase family At12D1_37000 PF00005 ABC transporter At12D1_37000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_37020 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_37030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_37050 PF04166 Pyridoxal phosphate biosynthetic protein PdxA At12D1_37060 PF00465 Iron-containing alcohol dehydrogenase At12D1_37070 PF07729 FCD domain At12D1_37070 PF00392 Bacterial regulatory proteins, gntR family At12D1_37100 PF03061 Thioesterase superfamily At12D1_37140 PF14403 Circularly permuted ATP-grasp type 2 At12D1_37140 PF04168 A predicted alpha-helical domain with a conserved ER motif. At12D1_37150 PF08379 Bacterial transglutaminase-like N-terminal region At12D1_37150 PF01841 Transglutaminase-like superfamily At12D1_37170 PF12848 ABC transporter At12D1_37170 PF00005 ABC transporter At12D1_37180 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain At12D1_37180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain At12D1_37190 PF07729 FCD domain At12D1_37190 PF00392 Bacterial regulatory proteins, gntR family At12D1_37220 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_37230 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_37240 PF07470 Glycosyl Hydrolase Family 88 At12D1_37250 PF03459 TOBE domain At12D1_37250 PF17912 MalK OB fold domain At12D1_37250 PF00005 ABC transporter At12D1_37270 PF01547 Bacterial extracellular solute-binding protein At12D1_37290 PF14602 Hexapeptide repeat of succinyl-transferase At12D1_37290 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal At12D1_37290 PF00132 Bacterial transferase hexapeptide (six repeats) At12D1_37300 PF01070 FMN-dependent dehydrogenase At12D1_37330 PF00107 Zinc-binding dehydrogenase At12D1_37330 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_37340 PF03737 Aldolase/RraA At12D1_37350 PF00497 Bacterial extracellular solute-binding proteins, family 3 At12D1_37360 PF00005 ABC transporter At12D1_37370 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_37380 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_37390 PF00106 short chain dehydrogenase At12D1_37400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain At12D1_37400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain At12D1_37420 PF01370 NAD dependent epimerase/dehydratase family At12D1_37430 PF01970 Tripartite tricarboxylate transporter TctA family At12D1_37450 PF03737 Aldolase/RraA At12D1_37460 PF03401 Tripartite tricarboxylate transporter family receptor At12D1_37470 PF03466 LysR substrate binding domain At12D1_37470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_37480 PF00892 EamA-like transporter family At12D1_37490 PF00892 EamA-like transporter family At12D1_37500 PF00364 Biotin-requiring enzyme At12D1_37510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain At12D1_37510 PF00289 Biotin carboxylase, N-terminal domain At12D1_37510 PF02785 Biotin carboxylase C-terminal domain At12D1_37530 PF02682 Carboxyltransferase domain, subdomain C and D At12D1_37540 PF02626 Carboxyltransferase domain, subdomain A and B At12D1_37550 PF03746 LamB/YcsF family At12D1_37560 PF08402 TOBE domain At12D1_37560 PF00005 ABC transporter At12D1_37580 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_37590 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_37610 PF00300 Histidine phosphatase superfamily (branch 1) At12D1_37610 PF00106 short chain dehydrogenase At12D1_37620 PF03466 LysR substrate binding domain At12D1_37620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_37630 PF00672 HAMP domain At12D1_37630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_37640 PF02782 FGGY family of carbohydrate kinases, C-terminal domain At12D1_37640 PF00370 FGGY family of carbohydrate kinases, N-terminal domain At12D1_37650 PF01791 DeoC/LacD family aldolase At12D1_37660 PF16901 C-terminal domain of alpha-glycerophosphate oxidase At12D1_37660 PF01266 FAD dependent oxidoreductase At12D1_37670 PF00248 Aldo/keto reductase family At12D1_37690 PF02653 Branched-chain amino acid transport system / permease component At12D1_37700 PF00005 ABC transporter At12D1_37720 PF00072 Response regulator receiver domain At12D1_37740 PF00459 Inositol monophosphatase family At12D1_37760 PF00011 Hsp20/alpha crystallin family At12D1_37770 PF13593 SBF-like CPA transporter family (DUF4137) At12D1_37780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_37780 PF03466 LysR substrate binding domain At12D1_37790 PF00370 FGGY family of carbohydrate kinases, N-terminal domain At12D1_37790 PF02782 FGGY family of carbohydrate kinases, C-terminal domain At12D1_37820 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_37830 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_37840 PF00005 ABC transporter At12D1_37840 PF17912 MalK OB fold domain At12D1_37850 PF08402 TOBE domain At12D1_37850 PF00005 ABC transporter At12D1_37860 PF16901 C-terminal domain of alpha-glycerophosphate oxidase At12D1_37860 PF01266 FAD dependent oxidoreductase At12D1_37870 PF08220 DeoR-like helix-turn-helix domain At12D1_37870 PF00455 DeoR C terminal sensor domain At12D1_37880 PF10414 Sirohaem synthase dimerisation region At12D1_37880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases At12D1_37880 PF14824 Sirohaem biosynthesis protein central At12D1_37890 PF00384 Molybdopterin oxidoreductase At12D1_37890 PF01568 Molydopterin dinucleotide binding domain At12D1_37890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain At12D1_37890 PF04324 BFD-like [2Fe-2S] binding domain At12D1_37920 PF07992 Pyridine nucleotide-disulphide oxidoreductase At12D1_37920 PF18267 Rubredoxin NAD+ reductase C-terminal domain At12D1_37920 PF04324 BFD-like [2Fe-2S] binding domain At12D1_37920 PF01077 Nitrite and sulphite reductase 4Fe-4S domain At12D1_37920 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain At12D1_37930 PF00005 ABC transporter At12D1_37940 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_37970 PF03861 ANTAR domain At12D1_37970 PF08376 Nitrate and nitrite sensing At12D1_37980 PF00392 Bacterial regulatory proteins, gntR family At12D1_37980 PF07729 FCD domain At12D1_37990 PF01566 Natural resistance-associated macrophage protein At12D1_38000 PF03746 LamB/YcsF family At12D1_38010 PF07286 Protein of unknown function (DUF1445) At12D1_38020 PF02682 Carboxyltransferase domain, subdomain C and D At12D1_38030 PF00364 Biotin-requiring enzyme At12D1_38030 PF00289 Biotin carboxylase, N-terminal domain At12D1_38030 PF02785 Biotin carboxylase C-terminal domain At12D1_38030 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain At12D1_38040 PF00128 Alpha amylase, catalytic domain At12D1_38040 PF02806 Alpha amylase, C-terminal all-beta domain At12D1_38050 PF00376 MerR family regulatory protein At12D1_38050 PF09278 MerR, DNA binding At12D1_38060 PF00593 TonB dependent receptor At12D1_38060 PF07715 TonB-dependent Receptor Plug Domain At12D1_38070 PF02885 Glycosyl transferase family, helical bundle domain At12D1_38070 PF00591 Glycosyl transferase family, a/b domain At12D1_38080 PF06772 Bacterial low temperature requirement A protein (LtrA) At12D1_38110 PF11800 Replication protein C C-terminal region At12D1_38110 PF03428 Replication protein C N-terminal domain At12D1_38120 PF07506 RepB plasmid partitioning protein At12D1_38120 PF02195 ParB-like nuclease domain At12D1_38130 PF13614 AAA domain At12D1_38160 PF01042 Endoribonuclease L-PSP At12D1_38170 PF14031 Putative serine dehydratase domain At12D1_38170 PF01168 Alanine racemase, N-terminal domain At12D1_38180 PF07171 MlrC C-terminus At12D1_38180 PF07364 Metallopeptidase family M81 At12D1_38190 PF05962 HutD At12D1_38200 PF01175 Urocanase Rossmann-like domain At12D1_38200 PF17391 Urocanase N-terminal domain At12D1_38200 PF17392 Urocanase C-terminal domain At12D1_38220 PF00221 Aromatic amino acid lyase At12D1_38230 PF01979 Amidohydrolase family At12D1_38240 PF01979 Amidohydrolase family At12D1_38270 PF01527 Transposase At12D1_38280 PF13683 Integrase core domain At12D1_38280 PF13276 HTH-like domain At12D1_38290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_38290 PF00005 ABC transporter At12D1_38300 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_38300 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_38310 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_38320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_38330 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_38340 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_38360 PF13533 Biotin-lipoyl like At12D1_38400 PF12833 Helix-turn-helix domain At12D1_38400 PF02311 AraC-like ligand binding domain At12D1_38410 PF00440 Bacterial regulatory proteins, tetR family At12D1_38470 PF01047 MarR family At12D1_38480 PF03466 LysR substrate binding domain At12D1_38480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_38490 PF04303 PrpF protein At12D1_38510 PF00005 ABC transporter At12D1_38520 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_38550 PF00672 HAMP domain At12D1_38550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_38570 PF03275 UDP-galactopyranose mutase At12D1_38590 PF00535 Glycosyl transferase family 2 At12D1_38610 PF03466 LysR substrate binding domain At12D1_38610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_38620 PF07690 Major Facilitator Superfamily At12D1_38640 PF02129 X-Pro dipeptidyl-peptidase (S15 family) At12D1_38650 PF03466 LysR substrate binding domain At12D1_38650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_38660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily At12D1_38690 PF07969 Amidohydrolase family At12D1_38730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_38730 PF03466 LysR substrate binding domain At12D1_38740 PF07690 Major Facilitator Superfamily At12D1_38760 PF00512 His Kinase A (phospho-acceptor) domain At12D1_38760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_38760 PF00672 HAMP domain At12D1_38770 PF00072 Response regulator receiver domain At12D1_38770 PF00486 Transcriptional regulatory protein, C terminal At12D1_38780 PF01569 PAP2 superfamily At12D1_38870 PF13673 Acetyltransferase (GNAT) domain At12D1_38880 PF06968 Biotin and Thiamin Synthesis associated domain At12D1_38880 PF04055 Radical SAM superfamily At12D1_38890 PF00155 Aminotransferase class I and II At12D1_38910 PF00202 Aminotransferase class-III At12D1_38920 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal At12D1_38920 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III At12D1_38950 PF01527 Transposase At12D1_38960 PF05717 IS66 Orf2 like protein At12D1_38970 PF13007 Transposase C of IS166 homeodomain At12D1_38970 PF03050 Transposase IS66 family At12D1_38970 PF13005 zinc-finger binding domain of transposase IS66 At12D1_38970 PF13817 IS66 C-terminal element At12D1_39000 PF13307 Helicase C-terminal domain At12D1_39000 PF00929 Exonuclease At12D1_39000 PF04851 Type III restriction enzyme, res subunit At12D1_39050 PF00491 Arginase family At12D1_39060 PF02423 Ornithine cyclodeaminase/mu-crystallin family At12D1_39070 PF00892 EamA-like transporter family At12D1_39080 PF02894 Oxidoreductase family, C-terminal alpha/beta domain At12D1_39080 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_39090 PF00672 HAMP domain At12D1_39090 PF00211 Adenylate and Guanylate cyclase catalytic domain At12D1_39110 PF07756 Protein of unknown function (DUF1612) At12D1_39110 PF11972 HTH DNA binding domain At12D1_39120 PF00083 Sugar (and other) transporter At12D1_39130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_39130 PF00512 His Kinase A (phospho-acceptor) domain At12D1_39140 PF00072 Response regulator receiver domain At12D1_39140 PF00486 Transcriptional regulatory protein, C terminal At12D1_39150 PF00884 Sulfatase At12D1_39150 PF08019 Phosphoethanolamine transferase EptA/EptB At12D1_39170 PF03466 LysR substrate binding domain At12D1_39170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_39180 PF00593 TonB dependent receptor At12D1_39180 PF07715 TonB-dependent Receptor Plug Domain At12D1_39200 PF01032 FecCD transport family At12D1_39210 PF00005 ABC transporter At12D1_39230 PF00034 Cytochrome c At12D1_39240 PF02631 RecX family At12D1_39250 PF08450 SMP-30/Gluconolactonase/LRE-like region At12D1_39270 PF02653 Branched-chain amino acid transport system / permease component At12D1_39280 PF00005 ABC transporter At12D1_39290 PF13407 Periplasmic binding protein domain At12D1_39300 PF07730 Histidine kinase At12D1_39300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_39310 PF00196 Bacterial regulatory proteins, luxR family At12D1_39310 PF00072 Response regulator receiver domain At12D1_39330 PF07995 Glucose / Sorbosone dehydrogenase At12D1_39350 PF04445 Putative SAM-dependent methyltransferase At12D1_39360 PF00849 RNA pseudouridylate synthase At12D1_39370 PF01205 Uncharacterized protein family UPF0029 At12D1_39380 PF07992 Pyridine nucleotide-disulphide oxidoreductase At12D1_39380 PF00724 NADH:flavin oxidoreductase / NADH oxidase family At12D1_39390 PF00005 ABC transporter At12D1_39390 PF00571 CBS domain At12D1_39400 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_39420 PF00072 Response regulator receiver domain At12D1_39420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_39420 PF13426 PAS domain At12D1_39430 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain At12D1_39440 PF02706 Chain length determinant protein At12D1_39440 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain At12D1_39440 PF13807 G-rich domain on putative tyrosine kinase At12D1_39450 PF00483 Nucleotidyl transferase At12D1_39460 PF00535 Glycosyl transferase family 2 At12D1_39470 PF00535 Glycosyl transferase family 2 At12D1_39480 PF00535 Glycosyl transferase family 2 At12D1_39500 PF00722 Glycosyl hydrolases family 16 At12D1_39510 PF01757 Acyltransferase family At12D1_39520 PF01943 Polysaccharide biosynthesis protein At12D1_39530 PF00535 Glycosyl transferase family 2 At12D1_39540 PF04230 Polysaccharide pyruvyl transferase At12D1_39550 PF00535 Glycosyl transferase family 2 At12D1_39560 PF11089 Exopolysaccharide production repressor At12D1_39590 PF01165 Ribosomal protein S21 At12D1_39600 PF01266 FAD dependent oxidoreductase At12D1_39630 PF01571 Aminomethyltransferase folate-binding domain At12D1_39630 PF08669 Glycine cleavage T-protein C-terminal barrel domain At12D1_39630 PF17806 Sarcosine oxidase A3 domain At12D1_39630 PF07992 Pyridine nucleotide-disulphide oxidoreductase At12D1_39680 PF01575 MaoC like domain At12D1_39690 PF00128 Alpha amylase, catalytic domain At12D1_39690 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) At12D1_39690 PF18390 Glycogen debranching enzyme C-terminal domain At12D1_39700 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain At12D1_39700 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I At12D1_39700 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II At12D1_39700 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III At12D1_39710 PF00534 Glycosyl transferases group 1 At12D1_39710 PF08323 Starch synthase catalytic domain At12D1_39720 PF00483 Nucleotidyl transferase At12D1_39730 PF00128 Alpha amylase, catalytic domain At12D1_39730 PF02806 Alpha amylase, C-terminal all-beta domain At12D1_39730 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) At12D1_39740 PF00343 Carbohydrate phosphorylase At12D1_39760 PF01177 Asp/Glu/Hydantoin racemase At12D1_39770 PF01037 Lrp/AsnC ligand binding domain At12D1_39790 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase At12D1_39790 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase At12D1_39810 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_39810 PF00107 Zinc-binding dehydrogenase At12D1_39830 PF00005 ABC transporter At12D1_39830 PF00664 ABC transporter transmembrane region At12D1_39840 PF00005 ABC transporter At12D1_39840 PF00664 ABC transporter transmembrane region At12D1_39850 PF01654 Cytochrome bd terminal oxidase subunit I At12D1_39860 PF02322 Cytochrome bd terminal oxidase subunit II At12D1_39870 PF08173 Membrane bound YbgT-like protein At12D1_39910 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain At12D1_39910 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain At12D1_39920 PF00890 FAD binding domain At12D1_39920 PF02910 Fumarate reductase flavoprotein C-term At12D1_39930 PF02445 Quinolinate synthetase A protein At12D1_39980 PF13274 Protein of unknown function (DUF4065) At12D1_40000 PF02224 Cytidylate kinase At12D1_40010 PF00575 S1 RNA binding domain At12D1_40070 PF00106 short chain dehydrogenase At12D1_40080 PF01321 Creatinase/Prolidase N-terminal domain At12D1_40080 PF00557 Metallopeptidase family M24 At12D1_40090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_40100 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_40110 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_40110 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_40120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_40120 PF00005 ABC transporter At12D1_40130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_40130 PF00005 ABC transporter At12D1_40140 PF01232 Mannitol dehydrogenase Rossmann domain At12D1_40140 PF08125 Mannitol dehydrogenase C-terminal domain At12D1_40150 PF00392 Bacterial regulatory proteins, gntR family At12D1_40150 PF07729 FCD domain At12D1_40160 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain At12D1_40160 PF13378 Enolase C-terminal domain-like At12D1_40170 PF00296 Luciferase-like monooxygenase At12D1_40200 PF12399 Branched-chain amino acid ATP-binding cassette transporter At12D1_40200 PF00005 ABC transporter At12D1_40210 PF00005 ABC transporter At12D1_40220 PF02653 Branched-chain amino acid transport system / permease component At12D1_40230 PF11862 Domain of unknown function (DUF3382) At12D1_40230 PF02653 Branched-chain amino acid transport system / permease component At12D1_40240 PF00732 GMC oxidoreductase At12D1_40240 PF05199 GMC oxidoreductase At12D1_40250 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase At12D1_40250 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase At12D1_40260 PF13193 AMP-binding enzyme C-terminal domain At12D1_40260 PF00501 AMP-binding enzyme At12D1_40300 PF01011 PQQ enzyme repeat At12D1_40310 PF05974 Domain of unknown function (DUF892) At12D1_40330 PF05430 S-adenosyl-L-methionine-dependent methyltransferase At12D1_40330 PF01266 FAD dependent oxidoreductase At12D1_40370 PF01965 DJ-1/PfpI family At12D1_40410 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain At12D1_40410 PF02951 Prokaryotic glutathione synthetase, N-terminal domain At12D1_40420 PF16363 GDP-mannose 4,6 dehydratase At12D1_40430 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain At12D1_40430 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain At12D1_40430 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain At12D1_40450 PF13409 Glutathione S-transferase, N-terminal domain At12D1_40460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_40460 PF03466 LysR substrate binding domain At12D1_40470 PF00171 Aldehyde dehydrogenase family At12D1_40480 PF09084 NMT1/THI5 like At12D1_40490 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_40500 PF00005 ABC transporter At12D1_40510 PF01619 Proline dehydrogenase At12D1_40510 PF14850 DNA-binding domain of Proline dehydrogenase At12D1_40510 PF00171 Aldehyde dehydrogenase family At12D1_40510 PF18327 Proline utilization A proline dehydrogenase N-terminal domain At12D1_40520 PF01037 Lrp/AsnC ligand binding domain At12D1_40530 PF04542 Sigma-70 region 2 At12D1_40530 PF08281 Sigma-70, region 4 At12D1_40550 PF00072 Response regulator receiver domain At12D1_40560 PF08447 PAS fold At12D1_40560 PF07536 HWE histidine kinase At12D1_40560 PF13426 PAS domain At12D1_40570 PF07536 HWE histidine kinase At12D1_40570 PF13581 Histidine kinase-like ATPase domain At12D1_40570 PF13426 PAS domain At12D1_40590 PF16363 GDP-mannose 4,6 dehydratase At12D1_40620 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain At12D1_40630 PF03435 Saccharopine dehydrogenase NADP binding domain At12D1_40630 PF16653 Saccharopine dehydrogenase C-terminal domain At12D1_40640 PF00271 Helicase conserved C-terminal domain At12D1_40640 PF00270 DEAD/DEAH box helicase At12D1_40650 PF13840 ACT domain At12D1_40650 PF01842 ACT domain At12D1_40650 PF00696 Amino acid kinase family At12D1_40660 PF01590 GAF domain At12D1_40660 PF05524 PEP-utilising enzyme, N-terminal At12D1_40660 PF00391 PEP-utilising enzyme, mobile domain At12D1_40660 PF02896 PEP-utilising enzyme, TIM barrel domain At12D1_40670 PF00472 RF-1 domain At12D1_40670 PF03462 PCRF domain At12D1_40680 PF05175 Methyltransferase small domain At12D1_40680 PF17827 PrmC N-terminal domain At12D1_40700 PF02861 Clp amino terminal domain, pathogenicity island component At12D1_40700 PF10431 C-terminal, D2-small domain, of ClpB protein At12D1_40700 PF17871 AAA lid domain At12D1_40700 PF00004 ATPase family associated with various cellular activities (AAA) At12D1_40700 PF07724 AAA domain (Cdc48 subfamily) At12D1_40710 PF01551 Peptidase family M23 At12D1_40710 PF01464 Transglycosylase SLT domain At12D1_40710 PF10145 Phage-related minor tail protein At12D1_40780 PF00216 Bacterial DNA-binding protein At12D1_40790 PF00364 Biotin-requiring enzyme At12D1_40790 PF00561 alpha/beta hydrolase fold At12D1_40810 PF05284 Protein of unknown function (DUF736) At12D1_40820 PF06067 Domain of unknown function (DUF932) At12D1_40830 PF00288 GHMP kinases N terminal domain At12D1_40840 PF00291 Pyridoxal-phosphate dependent enzyme At12D1_40870 PF00456 Transketolase, thiamine diphosphate binding domain At12D1_40870 PF17831 Pyruvate dehydrogenase E1 component middle domain At12D1_40880 PF01970 Tripartite tricarboxylate transporter TctA family At12D1_40910 PF00291 Pyridoxal-phosphate dependent enzyme At12D1_40920 PF00557 Metallopeptidase family M24 At12D1_40920 PF01321 Creatinase/Prolidase N-terminal domain At12D1_40940 PF01381 Helix-turn-helix At12D1_40960 PF00196 Bacterial regulatory proteins, luxR family At12D1_40960 PF03472 Autoinducer binding domain At12D1_41020 PF10502 Signal peptidase, peptidase S26 At12D1_41040 PF01551 Peptidase family M23 At12D1_41040 PF10145 Phage-related minor tail protein At12D1_41040 PF01464 Transglycosylase SLT domain At12D1_41100 PF02534 Type IV secretory system Conjugative DNA transfer At12D1_41120 PF00437 Type II/IV secretion system protein At12D1_41130 PF04956 TrbC/VIRB2 family At12D1_41150 PF03135 CagE, TrbE, VirB family, component of type IV transporter system At12D1_41210 PF03743 Bacterial conjugation TrbI-like protein At12D1_41220 PF00665 Integrase core domain At12D1_41230 PF13005 zinc-finger binding domain of transposase IS66 At12D1_41230 PF13817 IS66 C-terminal element At12D1_41230 PF13007 Transposase C of IS166 homeodomain At12D1_41230 PF03050 Transposase IS66 family At12D1_41240 PF05717 IS66 Orf2 like protein At12D1_41250 PF01527 Transposase At12D1_41260 PF00563 EAL domain At12D1_41260 PF00990 Diguanylate cyclase, GGDEF domain At12D1_41260 PF13188 PAS domain At12D1_41260 PF03707 Bacterial signalling protein N terminal repeat At12D1_41270 PF01022 Bacterial regulatory protein, arsR family At12D1_41280 PF12951 Passenger-associated-transport-repeat At12D1_41290 PF03707 Bacterial signalling protein N terminal repeat At12D1_41290 PF00563 EAL domain At12D1_41290 PF00990 Diguanylate cyclase, GGDEF domain At12D1_41300 PF13426 PAS domain At12D1_41300 PF13581 Histidine kinase-like ATPase domain At12D1_41300 PF07536 HWE histidine kinase At12D1_41310 PF08281 Sigma-70, region 4 At12D1_41310 PF00665 Integrase core domain At12D1_41320 PF00665 Integrase core domain At12D1_41320 PF08281 Sigma-70, region 4 At12D1_41330 PF01695 IstB-like ATP binding protein At12D1_41340 PF01527 Transposase At12D1_41350 PF00665 Integrase core domain At12D1_41350 PF13333 Integrase core domain At12D1_41350 PF13276 HTH-like domain At12D1_41360 PF01381 Helix-turn-helix At12D1_41370 PF07804 HipA-like C-terminal domain At12D1_41370 PF13657 HipA N-terminal domain At12D1_41390 PF00194 Eukaryotic-type carbonic anhydrase At12D1_41400 PF03707 Bacterial signalling protein N terminal repeat At12D1_41400 PF00563 EAL domain At12D1_41400 PF00990 Diguanylate cyclase, GGDEF domain At12D1_41410 PF03707 Bacterial signalling protein N terminal repeat At12D1_41410 PF00563 EAL domain At12D1_41410 PF00990 Diguanylate cyclase, GGDEF domain At12D1_41410 PF13188 PAS domain At12D1_41420 PF03707 Bacterial signalling protein N terminal repeat At12D1_41420 PF00990 Diguanylate cyclase, GGDEF domain At12D1_41420 PF00563 EAL domain At12D1_41420 PF13188 PAS domain At12D1_41430 PF00563 EAL domain At12D1_41430 PF01590 GAF domain At12D1_41430 PF00360 Phytochrome region At12D1_41430 PF00990 Diguanylate cyclase, GGDEF domain At12D1_41450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain At12D1_41450 PF02203 Tar ligand binding domain homologue At12D1_41450 PF00672 HAMP domain At12D1_41470 PF00563 EAL domain At12D1_41470 PF00990 Diguanylate cyclase, GGDEF domain At12D1_41470 PF08447 PAS fold At12D1_41470 PF08448 PAS fold At12D1_41480 PF01695 IstB-like ATP binding protein At12D1_41490 PF00665 Integrase core domain At12D1_41500 PF08447 PAS fold At12D1_41500 PF00563 EAL domain At12D1_41500 PF00990 Diguanylate cyclase, GGDEF domain At12D1_41500 PF08448 PAS fold At12D1_41510 PF00486 Transcriptional regulatory protein, C terminal At12D1_41510 PF00072 Response regulator receiver domain At12D1_41520 PF00990 Diguanylate cyclase, GGDEF domain At12D1_41520 PF08447 PAS fold At12D1_41520 PF08448 PAS fold At12D1_41520 PF00563 EAL domain At12D1_41530 PF02796 Helix-turn-helix domain of resolvase At12D1_41530 PF00239 Resolvase, N terminal domain At12D1_41540 PF00196 Bacterial regulatory proteins, luxR family At12D1_41540 PF00563 EAL domain At12D1_41550 PF12951 Passenger-associated-transport-repeat At12D1_41560 PF00230 Major intrinsic protein At12D1_41570 PF06776 Invasion associated locus B (IalB) protein At12D1_41580 PF07411 Domain of unknown function (DUF1508) At12D1_41590 PF03734 L,D-transpeptidase catalytic domain At12D1_41610 PF12951 Passenger-associated-transport-repeat At12D1_41640 PF12900 Pyridoxamine 5'-phosphate oxidase At12D1_41680 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_41680 PF13823 Alcohol dehydrogenase GroES-associated At12D1_41680 PF00107 Zinc-binding dehydrogenase At12D1_41690 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain At12D1_41690 PF00753 Metallo-beta-lactamase superfamily At12D1_41690 PF10996 Beta-Casp domain At12D1_41700 PF00118 TCP-1/cpn60 chaperonin family At12D1_41710 PF00689 Cation transporting ATPase, C-terminus At12D1_41710 PF00690 Cation transporter/ATPase, N-terminus At12D1_41720 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase At12D1_41720 PF09363 XFP C-terminal domain At12D1_41720 PF09364 XFP N-terminal domain At12D1_41730 PF00871 Acetokinase family At12D1_41750 PF00072 Response regulator receiver domain At12D1_41750 PF00486 Transcriptional regulatory protein, C terminal At12D1_41760 PF00027 Cyclic nucleotide-binding domain At12D1_41760 PF13545 Crp-like helix-turn-helix domain At12D1_41770 PF00072 Response regulator receiver domain At12D1_41770 PF13426 PAS domain At12D1_41770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_41800 PF01434 Peptidase family M41 At12D1_41800 PF17862 AAA+ lid domain At12D1_41800 PF00004 ATPase family associated with various cellular activities (AAA) At12D1_41810 PF02525 Flavodoxin-like fold At12D1_41830 PF01810 LysE type translocator At12D1_41860 PF00440 Bacterial regulatory proteins, tetR family At12D1_41870 PF00106 short chain dehydrogenase At12D1_41880 PF00724 NADH:flavin oxidoreductase / NADH oxidase family At12D1_41890 PF00106 short chain dehydrogenase At12D1_41900 PF00561 alpha/beta hydrolase fold At12D1_41910 PF00107 Zinc-binding dehydrogenase At12D1_41910 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_41950 PF00313 'Cold-shock' DNA-binding domain At12D1_41980 PF18011 C-terminal domain found in long catalases At12D1_41980 PF00199 Catalase At12D1_41980 PF06628 Catalase-related immune-responsive At12D1_42040 PF13426 PAS domain At12D1_42040 PF13581 Histidine kinase-like ATPase domain At12D1_42040 PF07536 HWE histidine kinase At12D1_42060 PF01527 Transposase At12D1_42090 PF00005 ABC transporter At12D1_42100 PF02653 Branched-chain amino acid transport system / permease component At12D1_42110 PF02653 Branched-chain amino acid transport system / permease component At12D1_42120 PF00296 Luciferase-like monooxygenase At12D1_42140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain At12D1_42140 PF08028 Acyl-CoA dehydrogenase, C-terminal domain At12D1_42150 PF02770 Acyl-CoA dehydrogenase, middle domain At12D1_42150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain At12D1_42150 PF08028 Acyl-CoA dehydrogenase, C-terminal domain At12D1_42160 PF00248 Aldo/keto reductase family At12D1_42190 PF02653 Branched-chain amino acid transport system / permease component At12D1_42200 PF00005 ABC transporter At12D1_42210 PF13407 Periplasmic binding protein domain At12D1_42230 PF02910 Fumarate reductase flavoprotein C-term At12D1_42230 PF00890 FAD binding domain At12D1_42250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_42250 PF00005 ABC transporter At12D1_42260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_42260 PF00005 ABC transporter At12D1_42280 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_42290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_42330 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_42340 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_42350 PF00497 Bacterial extracellular solute-binding proteins, family 3 At12D1_42370 PF00091 Tubulin/FtsZ family, GTPase domain At12D1_42370 PF12327 FtsZ family, C-terminal domain At12D1_42390 PF00109 Beta-ketoacyl synthase, N-terminal domain At12D1_42390 PF02801 Beta-ketoacyl synthase, C-terminal domain At12D1_42400 PF00440 Bacterial regulatory proteins, tetR family At12D1_42420 PF00873 AcrB/AcrD/AcrF family At12D1_42430 PF02798 Glutathione S-transferase, N-terminal domain At12D1_42440 PF00106 short chain dehydrogenase At12D1_42490 PF02129 X-Pro dipeptidyl-peptidase (S15 family) At12D1_42510 PF03466 LysR substrate binding domain At12D1_42510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_42520 PF00248 Aldo/keto reductase family At12D1_42530 PF00248 Aldo/keto reductase family At12D1_42560 PF00497 Bacterial extracellular solute-binding proteins, family 3 At12D1_42570 PF00005 ABC transporter At12D1_42580 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_42580 PF02894 Oxidoreductase family, C-terminal alpha/beta domain At12D1_42630 PF02733 Dak1 domain At12D1_42640 PF01037 Lrp/AsnC ligand binding domain At12D1_42650 PF01053 Cys/Met metabolism PLP-dependent enzyme At12D1_42680 PF03358 NADPH-dependent FMN reductase At12D1_42690 PF08028 Acyl-CoA dehydrogenase, C-terminal domain At12D1_42700 PF00296 Luciferase-like monooxygenase At12D1_42720 PF00005 ABC transporter At12D1_42720 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_42730 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_42730 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_42740 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_42750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_42760 PF01568 Molydopterin dinucleotide binding domain At12D1_42760 PF00384 Molybdopterin oxidoreductase At12D1_42770 PF01565 FAD binding domain At12D1_42770 PF02913 FAD linked oxidases, C-terminal domain At12D1_42780 PF01323 DSBA-like thioredoxin domain At12D1_42810 PF00881 Nitroreductase family At12D1_42820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_42850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_42850 PF03466 LysR substrate binding domain At12D1_42870 PF00392 Bacterial regulatory proteins, gntR family At12D1_42870 PF00155 Aminotransferase class I and II At12D1_42900 PF02567 Phenazine biosynthesis-like protein At12D1_42910 PF00293 NUDIX domain At12D1_42920 PF05163 DinB family At12D1_42930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_42930 PF03466 LysR substrate binding domain At12D1_42950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_42950 PF03466 LysR substrate binding domain At12D1_42960 PF00857 Isochorismatase family At12D1_42970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_42970 PF03466 LysR substrate binding domain At12D1_42980 PF00795 Carbon-nitrogen hydrolase At12D1_43010 PF00005 ABC transporter At12D1_43010 PF08402 TOBE domain At12D1_43020 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_43030 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_43040 PF04324 BFD-like [2Fe-2S] binding domain At12D1_43040 PF01266 FAD dependent oxidoreductase At12D1_43050 PF07992 Pyridine nucleotide-disulphide oxidoreductase At12D1_43050 PF04324 BFD-like [2Fe-2S] binding domain At12D1_43060 PF02782 FGGY family of carbohydrate kinases, C-terminal domain At12D1_43060 PF00370 FGGY family of carbohydrate kinases, N-terminal domain At12D1_43090 PF00005 ABC transporter At12D1_43100 PF01032 FecCD transport family At12D1_43110 PF01032 FecCD transport family At12D1_43120 PF01497 Periplasmic binding protein At12D1_43130 PF07715 TonB-dependent Receptor Plug Domain At12D1_43140 PF03928 Haem-degrading At12D1_43150 PF00356 Bacterial regulatory proteins, lacI family At12D1_43160 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_43160 PF02894 Oxidoreductase family, C-terminal alpha/beta domain At12D1_43170 PF01144 Coenzyme A transferase At12D1_43180 PF00378 Enoyl-CoA hydratase/isomerase At12D1_43200 PF01547 Bacterial extracellular solute-binding protein At12D1_43220 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_43230 PF03459 TOBE domain At12D1_43230 PF00005 ABC transporter At12D1_43230 PF17912 MalK OB fold domain At12D1_43240 PF00732 GMC oxidoreductase At12D1_43240 PF05199 GMC oxidoreductase At12D1_43250 PF05199 GMC oxidoreductase At12D1_43250 PF00732 GMC oxidoreductase At12D1_43260 PF02910 Fumarate reductase flavoprotein C-term At12D1_43260 PF00890 FAD binding domain At12D1_43280 PF00034 Cytochrome c At12D1_43290 PF00116 Cytochrome C oxidase subunit II, periplasmic domain At12D1_43300 PF00115 Cytochrome C and Quinol oxidase polypeptide I At12D1_43310 PF00510 Cytochrome c oxidase subunit III At12D1_43320 PF00510 Cytochrome c oxidase subunit III At12D1_43340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_43340 PF03466 LysR substrate binding domain At12D1_43370 PF02687 FtsX-like permease family At12D1_43370 PF12704 MacB-like periplasmic core domain At12D1_43370 PF00005 ABC transporter At12D1_43410 PF00072 Response regulator receiver domain At12D1_43410 PF00486 Transcriptional regulatory protein, C terminal At12D1_43420 PF00512 His Kinase A (phospho-acceptor) domain At12D1_43420 PF00672 HAMP domain At12D1_43420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_43440 PF00196 Bacterial regulatory proteins, luxR family At12D1_43480 PF00005 ABC transporter At12D1_43480 PF08402 TOBE domain At12D1_43500 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_43510 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_43520 PF01177 Asp/Glu/Hydantoin racemase At12D1_43540 PF00480 ROK family At12D1_43540 PF01325 Iron dependent repressor, N-terminal DNA binding domain At12D1_43550 PF13407 Periplasmic binding protein domain At12D1_43560 PF02653 Branched-chain amino acid transport system / permease component At12D1_43570 PF00005 ABC transporter At12D1_43580 PF02782 FGGY family of carbohydrate kinases, C-terminal domain At12D1_43580 PF00370 FGGY family of carbohydrate kinases, N-terminal domain At12D1_43590 PF00455 DeoR C terminal sensor domain At12D1_43590 PF08220 DeoR-like helix-turn-helix domain At12D1_43640 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_43650 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_43660 PF17912 MalK OB fold domain At12D1_43660 PF00005 ABC transporter At12D1_43690 PF11799 impB/mucB/samB family C-terminal domain At12D1_43690 PF00817 impB/mucB/samB family At12D1_43700 PF01979 Amidohydrolase family At12D1_43720 PF07690 Major Facilitator Superfamily At12D1_43770 PF00005 ABC transporter At12D1_43800 PF07969 Amidohydrolase family At12D1_43810 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_43810 PF00107 Zinc-binding dehydrogenase At12D1_43850 PF00248 Aldo/keto reductase family At12D1_43860 PF00248 Aldo/keto reductase family At12D1_43880 PF00848 Ring hydroxylating alpha subunit (catalytic domain) At12D1_43880 PF00355 Rieske [2Fe-2S] domain At12D1_43890 PF00175 Oxidoreductase NAD-binding domain At12D1_43890 PF00111 2Fe-2S iron-sulfur cluster binding domain At12D1_43890 PF00970 Oxidoreductase FAD-binding domain At12D1_43930 PF14748 Pyrroline-5-carboxylate reductase dimerisation At12D1_43930 PF03807 NADP oxidoreductase coenzyme F420-dependent At12D1_43940 PF05544 Proline racemase At12D1_43950 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_43960 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_43970 PF00005 ABC transporter At12D1_43970 PF00571 CBS domain At12D1_43990 PF01266 FAD dependent oxidoreductase At12D1_44000 PF00171 Aldehyde dehydrogenase family At12D1_44010 PF00701 Dihydrodipicolinate synthetase family At12D1_44040 PF01266 FAD dependent oxidoreductase At12D1_44060 PF07992 Pyridine nucleotide-disulphide oxidoreductase At12D1_44060 PF17806 Sarcosine oxidase A3 domain At12D1_44060 PF08669 Glycine cleavage T-protein C-terminal barrel domain At12D1_44060 PF01571 Aminomethyltransferase folate-binding domain At12D1_44080 PF00464 Serine hydroxymethyltransferase At12D1_44090 PF00551 Formyl transferase At12D1_44110 PF00440 Bacterial regulatory proteins, tetR family At12D1_44120 PF00245 Alkaline phosphatase At12D1_44140 PF00005 ABC transporter At12D1_44170 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_44170 PF00107 Zinc-binding dehydrogenase At12D1_44180 PF12833 Helix-turn-helix domain At12D1_44190 PF13407 Periplasmic binding protein domain At12D1_44200 PF00005 ABC transporter At12D1_44210 PF02653 Branched-chain amino acid transport system / permease component At12D1_44220 PF00106 short chain dehydrogenase At12D1_44230 PF02782 FGGY family of carbohydrate kinases, C-terminal domain At12D1_44230 PF00370 FGGY family of carbohydrate kinases, N-terminal domain At12D1_44250 PF00083 Sugar (and other) transporter At12D1_44250 PF08946 Osmosensory transporter coiled coil At12D1_44270 PF02563 Polysaccharide biosynthesis/export protein At12D1_44310 PF00691 OmpA family At12D1_44420 PF17871 AAA lid domain At12D1_44420 PF07724 AAA domain (Cdc48 subfamily) At12D1_44420 PF10431 C-terminal, D2-small domain, of ClpB protein At12D1_44420 PF00004 ATPase family associated with various cellular activities (AAA) At12D1_44460 PF04717 Type VI secretion system, phage-baseplate injector At12D1_44530 PF00990 Diguanylate cyclase, GGDEF domain At12D1_44530 PF13188 PAS domain At12D1_44530 PF03707 Bacterial signalling protein N terminal repeat At12D1_44530 PF00563 EAL domain At12D1_44540 PF00459 Inositol monophosphatase family At12D1_44570 PF00356 Bacterial regulatory proteins, lacI family At12D1_44580 PF03471 Transporter associated domain At12D1_44580 PF03741 Integral membrane protein TerC family At12D1_44610 PF03459 TOBE domain At12D1_44610 PF17912 MalK OB fold domain At12D1_44610 PF00005 ABC transporter At12D1_44620 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_44630 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_44640 PF13416 Bacterial extracellular solute-binding protein At12D1_44650 PF01261 Xylose isomerase-like TIM barrel At12D1_44660 PF02894 Oxidoreductase family, C-terminal alpha/beta domain At12D1_44660 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_44670 PF00356 Bacterial regulatory proteins, lacI family At12D1_44700 PF03466 LysR substrate binding domain At12D1_44700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_44720 PF13407 Periplasmic binding protein domain At12D1_44730 PF00005 ABC transporter At12D1_44740 PF02653 Branched-chain amino acid transport system / permease component At12D1_44750 PF02653 Branched-chain amino acid transport system / permease component At12D1_44760 PF00356 Bacterial regulatory proteins, lacI family At12D1_44780 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_44780 PF02894 Oxidoreductase family, C-terminal alpha/beta domain At12D1_44820 PF00034 Cytochrome c At12D1_44850 PF07732 Multicopper oxidase At12D1_44850 PF00394 Multicopper oxidase At12D1_44890 PF00092 von Willebrand factor type A domain At12D1_44900 PF08406 CbbQ/NirQ/NorQ C-terminal At12D1_44900 PF07728 AAA domain (dynein-related subfamily) At12D1_44910 PF00115 Cytochrome C and Quinol oxidase polypeptide I At12D1_44920 PF00034 Cytochrome c At12D1_44940 PF00510 Cytochrome c oxidase subunit III At12D1_44970 PF02441 Flavoprotein At12D1_44980 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase At12D1_44990 PF04343 Protein of unknown function, DUF488 At12D1_45060 PF00005 ABC transporter At12D1_45080 PF06796 Periplasmic nitrate reductase protein NapE At12D1_45110 PF04879 Molybdopterin oxidoreductase Fe4S4 domain At12D1_45110 PF00384 Molybdopterin oxidoreductase At12D1_45110 PF01568 Molydopterin dinucleotide binding domain At12D1_45120 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) At12D1_45130 PF03264 NapC/NirT cytochrome c family, N-terminal region At12D1_45150 PF17837 4'-phosphopantetheinyl transferase N-terminal domain At12D1_45150 PF01648 4'-phosphopantetheinyl transferase superfamily At12D1_45170 PF00550 Phosphopantetheine attachment site At12D1_45170 PF00857 Isochorismatase family At12D1_45180 PF00501 AMP-binding enzyme At12D1_45180 PF13193 AMP-binding enzyme C-terminal domain At12D1_45190 PF00425 chorismate binding enzyme At12D1_45200 PF00550 Phosphopantetheine attachment site At12D1_45200 PF00668 Condensation domain At12D1_45200 PF13193 AMP-binding enzyme C-terminal domain At12D1_45200 PF00501 AMP-binding enzyme At12D1_45210 PF00668 Condensation domain At12D1_45210 PF00550 Phosphopantetheine attachment site At12D1_45210 PF00501 AMP-binding enzyme At12D1_45210 PF00975 Thioesterase domain At12D1_45220 PF00668 Condensation domain At12D1_45220 PF13193 AMP-binding enzyme C-terminal domain At12D1_45220 PF00501 AMP-binding enzyme At12D1_45220 PF00550 Phosphopantetheine attachment site At12D1_45220 PF00975 Thioesterase domain At12D1_45240 PF04954 Siderophore-interacting protein At12D1_45240 PF08021 Siderophore-interacting FAD-binding domain At12D1_45260 PF01032 FecCD transport family At12D1_45270 PF01032 FecCD transport family At12D1_45280 PF00005 ABC transporter At12D1_45310 PF07715 TonB-dependent Receptor Plug Domain At12D1_45320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain At12D1_45320 PF02770 Acyl-CoA dehydrogenase, middle domain At12D1_45320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain At12D1_45330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_45330 PF03466 LysR substrate binding domain At12D1_45340 PF00356 Bacterial regulatory proteins, lacI family At12D1_45360 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_45380 PF08402 TOBE domain At12D1_45380 PF00005 ABC transporter At12D1_45400 PF01979 Amidohydrolase family At12D1_45400 PF13382 Adenine deaminase C-terminal domain At12D1_45410 PF03466 LysR substrate binding domain At12D1_45410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_45420 PF07690 Major Facilitator Superfamily At12D1_45430 PF01546 Peptidase family M20/M25/M40 At12D1_45430 PF07687 Peptidase dimerisation domain At12D1_45440 PF00156 Phosphoribosyl transferase domain At12D1_45450 PF01244 Membrane dipeptidase (Peptidase family M19) At12D1_45460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_45470 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_45490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_45490 PF00005 ABC transporter At12D1_45500 PF00005 ABC transporter At12D1_45500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_45510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_45510 PF03466 LysR substrate binding domain At12D1_45520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_45530 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_45540 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_45540 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_45550 PF01425 Amidase At12D1_45560 PF01965 DJ-1/PfpI family At12D1_45580 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_45580 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_45590 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_45600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_45610 PF01546 Peptidase family M20/M25/M40 At12D1_45610 PF07687 Peptidase dimerisation domain At12D1_45620 PF00005 ABC transporter At12D1_45620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_45630 PF04198 Putative sugar-binding domain At12D1_45650 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_45660 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_45670 PF00005 ABC transporter At12D1_45670 PF08402 TOBE domain At12D1_45690 PF01232 Mannitol dehydrogenase Rossmann domain At12D1_45690 PF08125 Mannitol dehydrogenase C-terminal domain At12D1_45700 PF13419 Haloacid dehalogenase-like hydrolase At12D1_45710 PF02782 FGGY family of carbohydrate kinases, C-terminal domain At12D1_45710 PF00370 FGGY family of carbohydrate kinases, N-terminal domain At12D1_45740 PF10576 Iron-sulfur binding domain of endonuclease III At12D1_45740 PF00730 HhH-GPD superfamily base excision DNA repair protein At12D1_45740 PF00633 Helix-hairpin-helix motif At12D1_45760 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain At12D1_45760 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain At12D1_45790 PF13936 Helix-turn-helix domain At12D1_45790 PF04198 Putative sugar-binding domain At12D1_45800 PF00923 Transaldolase/Fructose-6-phosphate aldolase At12D1_45810 PF01614 Bacterial transcriptional regulator At12D1_45810 PF09339 IclR helix-turn-helix domain At12D1_45840 PF00950 ABC 3 transport family At12D1_45850 PF00950 ABC 3 transport family At12D1_45860 PF00005 ABC transporter At12D1_45870 PF01297 Zinc-uptake complex component A periplasmic At12D1_45890 PF01734 Patatin-like phospholipase At12D1_45900 PF01336 OB-fold nucleic acid binding domain At12D1_45900 PF00152 tRNA synthetases class II (D, K and N) At12D1_45910 PF00749 tRNA synthetases class I (E and Q), catalytic domain At12D1_45920 PF03600 Citrate transporter At12D1_45920 PF02080 TrkA-C domain At12D1_45930 PF01541 GIY-YIG catalytic domain At12D1_45940 PF03741 Integral membrane protein TerC family At12D1_45940 PF03471 Transporter associated domain At12D1_45950 PF00440 Bacterial regulatory proteins, tetR family At12D1_45960 PF13533 Biotin-lipoyl like At12D1_45970 PF07690 Major Facilitator Superfamily At12D1_45990 PF00356 Bacterial regulatory proteins, lacI family At12D1_45990 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family At12D1_46000 PF02782 FGGY family of carbohydrate kinases, C-terminal domain At12D1_46000 PF00370 FGGY family of carbohydrate kinases, N-terminal domain At12D1_46010 PF01261 Xylose isomerase-like TIM barrel At12D1_46020 PF00232 Glycosyl hydrolase family 1 At12D1_46030 PF00881 Nitroreductase family At12D1_46040 PF09383 NIL domain At12D1_46040 PF00005 ABC transporter At12D1_46050 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_46060 PF03180 NLPA lipoprotein At12D1_46070 PF03707 Bacterial signalling protein N terminal repeat At12D1_46070 PF00563 EAL domain At12D1_46070 PF13188 PAS domain At12D1_46070 PF00990 Diguanylate cyclase, GGDEF domain At12D1_46110 PF01081 KDPG and KHG aldolase At12D1_46150 PF03824 High-affinity nickel-transport protein At12D1_46190 PF13505 Outer membrane protein beta-barrel domain At12D1_46220 PF02492 CobW/HypB/UreG, nucleotide-binding domain At12D1_46220 PF07683 Cobalamin synthesis protein cobW C-terminal domain At12D1_46230 PF02633 Creatinine amidohydrolase At12D1_46240 PF01047 MarR family At12D1_46250 PF00356 Bacterial regulatory proteins, lacI family At12D1_46260 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain At12D1_46260 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain At12D1_46270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_46270 PF02894 Oxidoreductase family, C-terminal alpha/beta domain At12D1_46280 PF04962 KduI/IolB family At12D1_46290 PF01261 Xylose isomerase-like TIM barrel At12D1_46300 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain At12D1_46300 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain At12D1_46300 PF00205 Thiamine pyrophosphate enzyme, central domain At12D1_46310 PF00294 pfkB family carbohydrate kinase At12D1_46330 PF00005 ABC transporter At12D1_46340 PF12399 Branched-chain amino acid ATP-binding cassette transporter At12D1_46340 PF00005 ABC transporter At12D1_46370 PF13458 Periplasmic binding protein At12D1_46390 PF12833 Helix-turn-helix domain At12D1_46410 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_46410 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_46420 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_46430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_46440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_46440 PF00005 ABC transporter At12D1_46460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily At12D1_46480 PF01220 Dehydroquinase class II At12D1_46490 PF08501 Shikimate dehydrogenase substrate binding domain At12D1_46490 PF18317 Shikimate 5'-dehydrogenase C-terminal domain At12D1_46500 PF00005 ABC transporter At12D1_46510 PF00497 Bacterial extracellular solute-binding proteins, family 3 At12D1_46520 PF00497 Bacterial extracellular solute-binding proteins, family 3 At12D1_46530 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_46540 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_46550 PF10397 Adenylosuccinate lyase C-terminus At12D1_46550 PF00206 Lyase At12D1_46560 PF00775 Dioxygenase At12D1_46570 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal At12D1_46570 PF00775 Dioxygenase At12D1_46580 PF02627 Carboxymuconolactone decarboxylase family At12D1_46590 PF00561 alpha/beta hydrolase fold At12D1_46600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_46600 PF03466 LysR substrate binding domain At12D1_46610 PF01494 FAD binding domain At12D1_46630 PF01614 Bacterial transcriptional regulator At12D1_46630 PF09339 IclR helix-turn-helix domain At12D1_46640 PF01144 Coenzyme A transferase At12D1_46650 PF01144 Coenzyme A transferase At12D1_46660 PF02803 Thiolase, C-terminal domain At12D1_46660 PF00108 Thiolase, N-terminal domain At12D1_46680 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain At12D1_46680 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II At12D1_46680 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III At12D1_46680 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I At12D1_46690 PF00356 Bacterial regulatory proteins, lacI family At12D1_46700 PF13407 Periplasmic binding protein domain At12D1_46710 PF13407 Periplasmic binding protein domain At12D1_46720 PF01261 Xylose isomerase-like TIM barrel At12D1_46730 PF01408 Oxidoreductase family, NAD-binding Rossmann fold At12D1_46730 PF02894 Oxidoreductase family, C-terminal alpha/beta domain At12D1_46750 PF00356 Bacterial regulatory proteins, lacI family At12D1_46760 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_46770 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_46780 PF00005 ABC transporter At12D1_46780 PF17912 MalK OB fold domain At12D1_46800 PF07470 Glycosyl Hydrolase Family 88 At12D1_46840 PF07690 Major Facilitator Superfamily At12D1_46850 PF07715 TonB-dependent Receptor Plug Domain At12D1_46850 PF00593 TonB dependent receptor At12D1_46860 PF04773 FecR protein At12D1_46860 PF16220 Domain of unknown function (DUF4880) At12D1_46880 PF00480 ROK family At12D1_46880 PF01325 Iron dependent repressor, N-terminal DNA binding domain At12D1_46890 PF03009 Glycerophosphoryl diester phosphodiesterase family At12D1_46900 PF00106 short chain dehydrogenase At12D1_46910 PF12833 Helix-turn-helix domain At12D1_46910 PF12852 Cupin At12D1_46930 PF11953 Domain of unknown function (DUF3470) At12D1_46930 PF00037 4Fe-4S binding domain At12D1_46940 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain At12D1_46940 PF02777 Iron/manganese superoxide dismutases, C-terminal domain At12D1_46950 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB At12D1_46950 PF17287 POTRA domain At12D1_46950 PF08479 POTRA domain, ShlB-type At12D1_46970 PF13332 Hemagglutinin repeat At12D1_46970 PF04829 Pre-toxin domain with VENN motif At12D1_46970 PF04829 Pre-toxin domain with VENN motif At12D1_46970 PF15526 Novel toxin 21 At12D1_46970 PF05860 haemagglutination activity domain At12D1_46970 PF13332 Hemagglutinin repeat At12D1_46970 PF05594 Haemagluttinin repeat At12D1_46970 PF15526 Novel toxin 21 At12D1_46970 PF05860 haemagglutination activity domain At12D1_46970 PF05594 Haemagluttinin repeat At12D1_46980 PF07262 CDI immunity protein At12D1_47010 PF01527 Transposase At12D1_47020 PF05717 IS66 Orf2 like protein At12D1_47030 PF03050 Transposase IS66 family At12D1_47030 PF13005 zinc-finger binding domain of transposase IS66 At12D1_47030 PF13817 IS66 C-terminal element At12D1_47030 PF13007 Transposase C of IS166 homeodomain At12D1_47050 PF17841 BID domain of Bartonella effector protein (Bep) At12D1_47050 PF01443 Viral (Superfamily 1) RNA helicase At12D1_47050 PF03389 MobA/MobL family At12D1_47080 PF02534 Type IV secretory system Conjugative DNA transfer At12D1_47090 PF01758 Sodium Bile acid symporter family At12D1_47100 PF00248 Aldo/keto reductase family At12D1_47110 PF03466 LysR substrate binding domain At12D1_47110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_47140 PF00005 ABC transporter At12D1_47140 PF00664 ABC transporter transmembrane region At12D1_47150 PF01050 Mannose-6-phosphate isomerase At12D1_47150 PF00483 Nucleotidyl transferase At12D1_47160 PF13439 Glycosyltransferase Family 4 At12D1_47160 PF00534 Glycosyl transferases group 1 At12D1_47170 PF16363 GDP-mannose 4,6 dehydratase At12D1_47180 PF16363 GDP-mannose 4,6 dehydratase At12D1_47230 PF00535 Glycosyl transferase family 2 At12D1_47270 PF00485 Phosphoribulokinase / Uridine kinase family At12D1_47320 PF01032 FecCD transport family At12D1_47330 PF01032 FecCD transport family At12D1_47340 PF00005 ABC transporter At12D1_47350 PF07715 TonB-dependent Receptor Plug Domain At12D1_47360 PF13361 UvrD-like helicase C-terminal domain At12D1_47360 PF00580 UvrD/REP helicase N-terminal domain At12D1_47390 PF00356 Bacterial regulatory proteins, lacI family At12D1_47400 PF07992 Pyridine nucleotide-disulphide oxidoreductase At12D1_47400 PF01571 Aminomethyltransferase folate-binding domain At12D1_47400 PF17806 Sarcosine oxidase A3 domain At12D1_47400 PF08669 Glycine cleavage T-protein C-terminal barrel domain At12D1_47420 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_47430 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_47440 PF00005 ABC transporter At12D1_47440 PF17912 MalK OB fold domain At12D1_47440 PF03459 TOBE domain At12D1_47450 PF00005 ABC transporter At12D1_47450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_47460 PF00005 ABC transporter At12D1_47460 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_47470 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_47470 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_47480 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_47490 PF00392 Bacterial regulatory proteins, gntR family At12D1_47490 PF07729 FCD domain At12D1_47500 PF03786 D-mannonate dehydratase (UxuA) At12D1_47510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_47530 PF00563 EAL domain At12D1_47530 PF00990 Diguanylate cyclase, GGDEF domain At12D1_47530 PF03707 Bacterial signalling protein N terminal repeat At12D1_47530 PF13188 PAS domain At12D1_47560 PF02735 Ku70/Ku80 beta-barrel domain At12D1_47570 PF01068 ATP dependent DNA ligase domain At12D1_47570 PF04679 ATP dependent DNA ligase C terminal region At12D1_47570 PF13298 DNA polymerase Ligase (LigD) At12D1_47580 PF02735 Ku70/Ku80 beta-barrel domain At12D1_47590 PF01384 Phosphate transporter family At12D1_47600 PF01865 Protein of unknown function DUF47 At12D1_47630 PF00873 AcrB/AcrD/AcrF family At12D1_47640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion At12D1_47640 PF00529 HlyD membrane-fusion protein of T1SS At12D1_47650 PF00072 Response regulator receiver domain At12D1_47650 PF00486 Transcriptional regulatory protein, C terminal At12D1_47660 PF00672 HAMP domain At12D1_47660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_47660 PF00512 His Kinase A (phospho-acceptor) domain At12D1_47680 PF03466 LysR substrate binding domain At12D1_47680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_47690 PF00141 Peroxidase At12D1_47710 PF02311 AraC-like ligand binding domain At12D1_47710 PF12833 Helix-turn-helix domain At12D1_47720 PF00593 TonB dependent receptor At12D1_47720 PF07715 TonB-dependent Receptor Plug Domain At12D1_47740 PF01032 FecCD transport family At12D1_47750 PF01032 FecCD transport family At12D1_47760 PF00005 ABC transporter At12D1_47780 PF01381 Helix-turn-helix At12D1_47790 PF12833 Helix-turn-helix domain At12D1_47790 PF10114 Sensory domain found in PocR At12D1_47810 PF02653 Branched-chain amino acid transport system / permease component At12D1_47830 PF00005 ABC transporter At12D1_47830 PF12399 Branched-chain amino acid ATP-binding cassette transporter At12D1_47840 PF00005 ABC transporter At12D1_47850 PF00171 Aldehyde dehydrogenase family At12D1_47860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_47860 PF03466 LysR substrate binding domain At12D1_47870 PF04069 Substrate binding domain of ABC-type glycine betaine transport system At12D1_47880 PF12411 Choline sulfatase enzyme C terminal At12D1_47880 PF00884 Sulfatase At12D1_47890 PF00294 pfkB family carbohydrate kinase At12D1_47900 PF00005 ABC transporter At12D1_47900 PF08402 TOBE domain At12D1_47910 PF14698 Argininosuccinate lyase C-terminal At12D1_47910 PF00206 Lyase At12D1_47920 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_47930 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_47940 PF13416 Bacterial extracellular solute-binding protein At12D1_47950 PF00480 ROK family At12D1_48000 PF11975 Family 4 glycosyl hydrolase C-terminal domain At12D1_48000 PF02056 Family 4 glycosyl hydrolase At12D1_48010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_48020 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_48030 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_48030 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_48040 PF00005 ABC transporter At12D1_48040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_48050 PF02056 Family 4 glycosyl hydrolase At12D1_48050 PF11975 Family 4 glycosyl hydrolase C-terminal domain At12D1_48060 PF13533 Biotin-lipoyl like At12D1_48070 PF00005 ABC transporter At12D1_48110 PF00072 Response regulator receiver domain At12D1_48120 PF12327 FtsZ family, C-terminal domain At12D1_48120 PF00091 Tubulin/FtsZ family, GTPase domain At12D1_48130 PF07729 FCD domain At12D1_48130 PF00392 Bacterial regulatory proteins, gntR family At12D1_48140 PF00701 Dihydrodipicolinate synthetase family At12D1_48150 PF02615 Malate/L-lactate dehydrogenase At12D1_48170 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_48180 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_48190 PF00005 ABC transporter At12D1_48200 PF01266 FAD dependent oxidoreductase At12D1_48220 PF05544 Proline racemase At12D1_48230 PF00356 Bacterial regulatory proteins, lacI family At12D1_48250 PF00497 Bacterial extracellular solute-binding proteins, family 3 At12D1_48270 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_48280 PF00005 ABC transporter At12D1_48290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain At12D1_48290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain At12D1_48300 PF00563 EAL domain At12D1_48300 PF03707 Bacterial signalling protein N terminal repeat At12D1_48300 PF00990 Diguanylate cyclase, GGDEF domain At12D1_48310 PF02530 Porin subfamily At12D1_48320 PF01613 Flavin reductase like domain At12D1_48330 PF03466 LysR substrate binding domain At12D1_48330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_48350 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit At12D1_48350 PF00037 4Fe-4S binding domain At12D1_48350 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region At12D1_48360 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region At12D1_48360 PF00384 Molybdopterin oxidoreductase At12D1_48360 PF04879 Molybdopterin oxidoreductase Fe4S4 domain At12D1_48360 PF01568 Molydopterin dinucleotide binding domain At12D1_48360 PF00037 4Fe-4S binding domain At12D1_48380 PF07690 Major Facilitator Superfamily At12D1_48390 PF00701 Dihydrodipicolinate synthetase family At12D1_48400 PF08450 SMP-30/Gluconolactonase/LRE-like region At12D1_48410 PF07729 FCD domain At12D1_48410 PF00392 Bacterial regulatory proteins, gntR family At12D1_48420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_48430 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_48440 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_48440 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_48450 PF00005 ABC transporter At12D1_48450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_48460 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain At12D1_48460 PF13378 Enolase C-terminal domain-like At12D1_48480 PF07729 FCD domain At12D1_48480 PF00392 Bacterial regulatory proteins, gntR family At12D1_48490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_48500 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_48530 PF00005 ABC transporter At12D1_48530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_48540 PF00459 Inositol monophosphatase family At12D1_48560 PF00005 ABC transporter At12D1_48560 PF17850 CysA C-terminal regulatory domain At12D1_48570 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_48610 PF05532 CsbD-like At12D1_48630 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain At12D1_48630 PF02777 Iron/manganese superoxide dismutases, C-terminal domain At12D1_48640 PF03401 Tripartite tricarboxylate transporter family receptor At12D1_48650 PF00664 ABC transporter transmembrane region At12D1_48650 PF00005 ABC transporter At12D1_48670 PF00005 ABC transporter At12D1_48690 PF13954 PapC N-terminal domain At12D1_48690 PF00577 Outer membrane usher protein At12D1_48690 PF13953 PapC C-terminal domain At12D1_48720 PF11791 Aconitate B N-terminal domain At12D1_48720 PF00330 Aconitase family (aconitate hydratase) At12D1_48720 PF06434 Aconitate hydratase 2 N-terminus At12D1_48730 PF00132 Bacterial transferase hexapeptide (six repeats) At12D1_48750 PF00107 Zinc-binding dehydrogenase At12D1_48750 PF08240 Alcohol dehydrogenase GroES-like domain At12D1_48760 PF01590 GAF domain At12D1_48760 PF02954 Bacterial regulatory protein, Fis family At12D1_48760 PF00158 Sigma-54 interaction domain At12D1_48780 PF00356 Bacterial regulatory proteins, lacI family At12D1_48800 PF00005 ABC transporter At12D1_48810 PF02653 Branched-chain amino acid transport system / permease component At12D1_48820 PF02653 Branched-chain amino acid transport system / permease component At12D1_48830 PF01261 Xylose isomerase-like TIM barrel At12D1_48840 PF00485 Phosphoribulokinase / Uridine kinase family At12D1_48850 PF01261 Xylose isomerase-like TIM barrel At12D1_48900 PF00005 ABC transporter At12D1_48900 PF06472 ABC transporter transmembrane region 2 At12D1_49000 PF13614 AAA domain At12D1_49010 PF02195 ParB-like nuclease domain At12D1_49010 PF07506 RepB plasmid partitioning protein At12D1_49020 PF03428 Replication protein C N-terminal domain At12D1_49020 PF11800 Replication protein C C-terminal region At12D1_49030 PF00239 Resolvase, N terminal domain At12D1_49040 PF11972 HTH DNA binding domain At12D1_49040 PF07756 Protein of unknown function (DUF1612) At12D1_49080 PF08808 RES domain At12D1_49130 PF03466 LysR substrate binding domain At12D1_49130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_49160 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_49170 PF00005 ABC transporter At12D1_49180 PF09084 NMT1/THI5 like At12D1_49200 PF00296 Luciferase-like monooxygenase At12D1_49240 PF05199 GMC oxidoreductase At12D1_49240 PF00732 GMC oxidoreductase At12D1_49250 PF00561 alpha/beta hydrolase fold At12D1_49290 PF02653 Branched-chain amino acid transport system / permease component At12D1_49300 PF00005 ABC transporter At12D1_49320 PF00753 Metallo-beta-lactamase superfamily At12D1_49330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain At12D1_49330 PF02770 Acyl-CoA dehydrogenase, middle domain At12D1_49330 PF08028 Acyl-CoA dehydrogenase, C-terminal domain At12D1_49340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_49350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_49350 PF00005 ABC transporter At12D1_49370 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_49390 PF00296 Luciferase-like monooxygenase At12D1_49410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_49410 PF03466 LysR substrate binding domain At12D1_49420 PF17862 AAA+ lid domain At12D1_49420 PF01434 Peptidase family M41 At12D1_49420 PF00004 ATPase family associated with various cellular activities (AAA) At12D1_49440 PF09084 NMT1/THI5 like At12D1_49460 PF00072 Response regulator receiver domain At12D1_49460 PF00486 Transcriptional regulatory protein, C terminal At12D1_49470 PF00512 His Kinase A (phospho-acceptor) domain At12D1_49470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase At12D1_49470 PF00672 HAMP domain At12D1_49520 PF13340 Putative transposase of IS4/5 family (DUF4096) At12D1_49540 PF13505 Outer membrane protein beta-barrel domain At12D1_49570 PF17657 Bacterial DNA polymerase III alpha subunit finger domain At12D1_49570 PF07733 Bacterial DNA polymerase III alpha NTPase domain At12D1_49570 PF02811 PHP domain At12D1_49570 PF14579 Helix-hairpin-helix motif At12D1_49610 PF02661 Fic/DOC family At12D1_49610 PF17841 BID domain of Bartonella effector protein (Bep) At12D1_49660 PF17762 HTH domain found in ParB protein At12D1_49660 PF02195 ParB-like nuclease domain At12D1_49710 PF08401 Domain of unknown function (DUF1738) At12D1_49710 PF18818 Metallopeptidase superfamily domain At12D1_49710 PF13362 Toprim domain At12D1_49720 PF02899 Phage integrase, N-terminal SAM-like domain At12D1_49720 PF00589 Phage integrase family At12D1_49730 PF00589 Phage integrase family At12D1_49730 PF02899 Phage integrase, N-terminal SAM-like domain At12D1_49740 PF00589 Phage integrase family At12D1_49740 PF02899 Phage integrase, N-terminal SAM-like domain At12D1_49760 PF00892 EamA-like transporter family At12D1_49800 PF01850 PIN domain At12D1_49810 PF05284 Protein of unknown function (DUF736) At12D1_49830 PF00216 Bacterial DNA-binding protein At12D1_49860 PF02534 Type IV secretory system Conjugative DNA transfer At12D1_49870 PF06412 Conjugal transfer protein TraD At12D1_49880 PF07820 TraC-like protein At12D1_49890 PF17841 BID domain of Bartonella effector protein (Bep) At12D1_49890 PF03389 MobA/MobL family At12D1_49890 PF01443 Viral (Superfamily 1) RNA helicase At12D1_49900 PF10502 Signal peptidase, peptidase S26 At12D1_49910 PF00795 Carbon-nitrogen hydrolase At12D1_49920 PF06871 TraH_2 At12D1_49930 PF03466 LysR substrate binding domain At12D1_49930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_49950 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_49960 PF00497 Bacterial extracellular solute-binding proteins, family 3 At12D1_49990 PF09228 Prokaryotic Transcriptional repressor TraM At12D1_50010 PF03472 Autoinducer binding domain At12D1_50010 PF00196 Bacterial regulatory proteins, luxR family At12D1_50020 PF00128 Alpha amylase, catalytic domain At12D1_50030 PF02690 Na+/Pi-cotransporter At12D1_50040 PF08220 DeoR-like helix-turn-helix domain At12D1_50040 PF00455 DeoR C terminal sensor domain At12D1_50050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_50060 PF00005 ABC transporter At12D1_50060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_50070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_50070 PF00005 ABC transporter At12D1_50080 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_50090 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_50090 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_50100 PF03009 Glycerophosphoryl diester phosphodiesterase family At12D1_50110 PF00459 Inositol monophosphatase family At12D1_50140 PF13419 Haloacid dehalogenase-like hydrolase At12D1_50150 PF12911 N-terminal TM domain of oligopeptide transport permease C At12D1_50150 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_50160 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_50170 PF03009 Glycerophosphoryl diester phosphodiesterase family At12D1_50180 PF00005 ABC transporter At12D1_50180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_50190 PF00005 ABC transporter At12D1_50190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region At12D1_50200 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle At12D1_50210 PF00300 Histidine phosphatase superfamily (branch 1) At12D1_50220 PF00325 Bacterial regulatory proteins, crp family At12D1_50220 PF04198 Putative sugar-binding domain At12D1_50230 PF03472 Autoinducer binding domain At12D1_50230 PF00196 Bacterial regulatory proteins, luxR family At12D1_50260 PF02423 Ornithine cyclodeaminase/mu-crystallin family At12D1_50270 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain At12D1_50280 PF00491 Arginase family At12D1_50290 PF07992 Pyridine nucleotide-disulphide oxidoreductase At12D1_50290 PF04324 BFD-like [2Fe-2S] binding domain At12D1_50310 PF01266 FAD dependent oxidoreductase At12D1_50320 PF01968 Hydantoinase/oxoprolinase At12D1_50320 PF05378 Hydantoinase/oxoprolinase N-terminal region At12D1_50340 PF03466 LysR substrate binding domain At12D1_50340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_50350 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_50360 PF00528 Binding-protein-dependent transport system inner membrane component At12D1_50370 PF00497 Bacterial extracellular solute-binding proteins, family 3 At12D1_50380 PF00005 ABC transporter At12D1_50390 PF03466 LysR substrate binding domain At12D1_50390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family At12D1_50410 PF03743 Bacterial conjugation TrbI-like protein At12D1_50430 PF03524 Conjugal transfer protein At12D1_50440 PF04335 VirB8 protein At12D1_50450 PF04610 TrbL/VirB6 plasmid conjugal transfer protein At12D1_50460 PF10907 Protein of unknown function (DUF2749) At12D1_50480 PF03135 CagE, TrbE, VirB family, component of type IV transporter system At12D1_50490 PF05101 Type IV secretory pathway, VirB3-like protein At12D1_50500 PF04956 TrbC/VIRB2 family At12D1_50510 PF00437 Type II/IV secretion system protein At12D1_50520 PF00765 Autoinducer synthase