locus-tag	class	description
At1D1108_00010	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
At1D1108_00020	COG0635	Involved in the biosynthesis of porphyrin-containing compound
At1D1108_00030	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
At1D1108_00040	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
At1D1108_00050	COG1420	regulation of RNA biosynthetic process
At1D1108_00060	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
At1D1108_00070	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
At1D1108_00080	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
At1D1108_00100	COG1137	ATPase activity
At1D1108_00110	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
At1D1108_00130	COG0616	signal peptide processing
At1D1108_00140	COG0776	regulation of translation
At1D1108_00170	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
At1D1108_00180	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
At1D1108_00190	COG2205	protein histidine kinase activity
At1D1108_00190	COG0784	Response regulator, receiver
At1D1108_00190	COG5002	protein histidine kinase activity
At1D1108_00210	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
At1D1108_00220	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
At1D1108_00230	COG0728	peptidoglycan biosynthetic process
At1D1108_00250	COG0180	Tryptophanyl-tRNA synthetase
At1D1108_00270	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
At1D1108_00280	COG1214	PFAM Peptidase M22, glycoprotease
At1D1108_00290	COG1214	PFAM Peptidase M22, glycoprotease
At1D1108_00290	COG0456	acetyltransferase
At1D1108_00320	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
At1D1108_00330	COG1702	phosphate starvation-inducible protein PhoH
At1D1108_00340	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
At1D1108_00360	COG0815	Transfers the fatty acyl group on membrane lipoproteins
At1D1108_00370	COG1396	sequence-specific DNA binding
At1D1108_00380	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
At1D1108_00390	COG0220	tRNA (guanine-N7-)-methyltransferase activity
At1D1108_00400	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1108_00420	COG0242	peptide deformylase activity
At1D1108_00430	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
At1D1108_00440	COG0101	tRNA pseudouridine synthase activity
At1D1108_00460	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
At1D1108_00470	COG2171	N-acyltransferase activity
At1D1108_00490	COG0840	transmembrane signaling receptor activity
At1D1108_00510	COG0071	Belongs to the small heat shock protein (HSP20) family
At1D1108_00560	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
At1D1108_00580	COG0218	Necessary for normal cell division and for the maintenance of normal septation
At1D1108_00590	COG0706	membrane insertase activity
At1D1108_00600	COG0594	ribonuclease P activity
At1D1108_00610	COG0840	transmembrane signaling receptor activity
At1D1108_00630	COG2226	methyltransferase
At1D1108_00640	COG3842	ATPase activity
At1D1108_00650	COG1175	transmembrane transport
At1D1108_00660	COG0395	ABC-type sugar transport system, permease component
At1D1108_00690	COG0427	acetyl-CoA hydrolase
At1D1108_00710	COG3938	Belongs to the proline racemase family
At1D1108_00720	COG0418	dihydroorotase activity
At1D1108_00730	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
At1D1108_00770	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
At1D1108_00780	COG0166	Belongs to the GPI family
At1D1108_00790	COG0318	PFAM AMP-dependent synthetase and ligase
At1D1108_00800	COG3842	ATPase activity
At1D1108_00810	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D1108_00820	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
At1D1108_00830	COG4774	siderophore transport
At1D1108_00900	COG2326	polyphosphate kinase activity
At1D1108_00910	COG5002	protein histidine kinase activity
At1D1108_00920	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
At1D1108_00930	COG0573	inorganic phosphate transmembrane transporter activity
At1D1108_00950	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
At1D1108_00960	COG0704	Plays a role in the regulation of phosphate uptake
At1D1108_00970	COG0745	RESPONSE REGULATOR receiver
At1D1108_00990	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
At1D1108_01000	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
At1D1108_01010	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
At1D1108_01020	COG2967	ApaG domain
At1D1108_01040	COG0717	Belongs to the dCTP deaminase family
At1D1108_01050	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
At1D1108_01150	COG0167	dihydroorotate dehydrogenase activity
At1D1108_01180	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
At1D1108_01220	COG1959	2 iron, 2 sulfur cluster binding
At1D1108_01230	COG1201	RNA secondary structure unwinding
At1D1108_01290	COG1960	acyl-CoA dehydrogenase activity
At1D1108_01300	COG0183	Belongs to the thiolase family
At1D1108_01310	COG1250	3-hydroxyacyl-CoA dehydrogenase
At1D1108_01310	COG1024	Enoyl-CoA hydratase
At1D1108_01340	COG1320	monovalent cation:proton antiporter activity
At1D1108_01350	COG2212	antiporter activity
At1D1108_01360	COG1863	multisubunit Na H antiporter MnhE subunit
At1D1108_01370	COG0651	ATP synthesis coupled electron transport
At1D1108_01380	COG1006	Multisubunit Na H antiporter MnhC subunit
At1D1108_01390	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
At1D1108_01390	COG2111	Na H antiporter
At1D1108_01410	COG0840	transmembrane signaling receptor activity
At1D1108_01440	COG2198	Histidine kinase
At1D1108_01440	COG0643	Histidine kinase
At1D1108_01450	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
At1D1108_01460	COG2201	protein-glutamate methylesterase activity
At1D1108_01470	COG0745	RESPONSE REGULATOR receiver
At1D1108_01480	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
At1D1108_01500	COG1766	The M ring may be actively involved in energy transduction
At1D1108_01510	COG2771	luxR family
At1D1108_01530	COG2972	Histidine kinase
At1D1108_01530	COG0840	transmembrane signaling receptor activity
At1D1108_01540	COG0784	Response regulator, receiver
At1D1108_01540	COG2205	protein histidine kinase activity
At1D1108_01540	COG2198	Histidine kinase
At1D1108_01550	COG1970	mechanosensitive ion channel activity
At1D1108_01560	COG0436	Aminotransferase
At1D1108_01590	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
At1D1108_01600	COG0424	maF-like protein
At1D1108_01610	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
At1D1108_01630	COG5328	Belongs to the UPF0262 family
At1D1108_01640	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
At1D1108_01660	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
At1D1108_01690	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
At1D1108_01710	COG1338	Plays a role in the flagellum-specific transport system
At1D1108_01730	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
At1D1108_01750	COG1706	bacterial-type flagellum-dependent cell motility
At1D1108_01760	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
At1D1108_01770	COG4786	Flagellar basal body rod
At1D1108_01780	COG1677	Flagellar hook-basal body complex protein FliE
At1D1108_01790	COG1558	bacterial-type flagellum-dependent cell motility
At1D1108_01800	COG1815	bacterial-type flagellum-dependent cell motility
At1D1108_01820	COG1157	protein secretion by the type III secretion system
At1D1108_01830	COG4786	Flagellar basal body rod
At1D1108_01850	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
At1D1108_01860	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
At1D1108_01870	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
At1D1108_01880	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
At1D1108_01890	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
At1D1108_01930	COG1360	Flagellar Motor Protein
At1D1108_01980	COG1749	Flagellar hook protein flgE
At1D1108_02020	COG5443	negative regulation of bacterial-type flagellum assembly
At1D1108_02030	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
At1D1108_02050	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
At1D1108_02130	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
At1D1108_02140	COG1609	Transcriptional regulator
At1D1108_02150	COG1653	transport
At1D1108_02160	COG1175	transmembrane transport
At1D1108_02170	COG0395	ABC-type sugar transport system, permease component
At1D1108_02180	COG0366	Alpha amylase catalytic
At1D1108_02190	COG3842	ATPase activity
At1D1108_02220	COG0129	dihydroxy-acid dehydratase activity
At1D1108_02230	COG0363	glucosamine-6-phosphate deaminase activity
At1D1108_02240	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
At1D1108_02260	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1108_02280	COG2081	HI0933 family
At1D1108_02320	COG2224	Isocitrate lyase
At1D1108_02350	COG3842	ATPase activity
At1D1108_02360	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1108_02370	COG1177	transmembrane transport
At1D1108_02390	COG2205	protein histidine kinase activity
At1D1108_02410	COG0248	Ppx GppA phosphatase
At1D1108_02420	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
At1D1108_02430	COG0477	Major facilitator Superfamily
At1D1108_02490	COG0521	Mo-molybdopterin cofactor biosynthetic process
At1D1108_02500	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
At1D1108_02520	COG0142	geranyltranstransferase activity
At1D1108_02570	COG0752	glycyl-tRNA synthetase alpha subunit
At1D1108_02580	COG1704	LemA family
At1D1108_02590	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
At1D1108_02610	COG0751	glycine-tRNA ligase activity
At1D1108_02620	COG1683	Conserved Protein
At1D1108_02630	COG0840	transmembrane signaling receptor activity
At1D1108_02650	COG0151	Belongs to the GarS family
At1D1108_02660	COG2183	response to ionizing radiation
At1D1108_02670	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
At1D1108_02720	COG0583	DNA-binding transcription factor activity
At1D1108_02760	COG0306	phosphate transporter
At1D1108_02780	COG0561	phosphatase activity
At1D1108_02790	COG0438	transferase activity, transferring glycosyl groups
At1D1108_02800	COG2186	Transcriptional regulator
At1D1108_02820	COG0583	DNA-binding transcription factor activity
At1D1108_02830	COG0277	FAD linked oxidase domain protein
At1D1108_02850	COG0277	FAD linked oxidase domain protein
At1D1108_02860	COG0247	lactate metabolic process
At1D1108_02880	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1108_02890	COG2818	Glycosylase
At1D1108_02910	COG2855	membrane
At1D1108_02920	COG0583	DNA-binding transcription factor activity
At1D1108_02960	COG0124	histidyl-tRNA synthetase
At1D1108_02980	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
At1D1108_02990	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
At1D1108_03000	COG2259	Doxx family
At1D1108_03020	COG0459	protein refolding
At1D1108_03030	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
At1D1108_03050	COG0196	riboflavin kinase activity
At1D1108_03060	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
At1D1108_03080	COG0590	tRNA wobble adenosine to inosine editing
At1D1108_03090	COG1187	pseudouridine synthase activity
At1D1108_03100	COG0742	ribosomal rna small subunit methyltransferase
At1D1108_03110	COG1752	Esterase of the alpha-beta hydrolase superfamily
At1D1108_03130	COG0312	modulator of DNA gyrase
At1D1108_03160	COG1519	Transferase
At1D1108_03180	COG1663	tetraacyldisaccharide 4'-kinase activity
At1D1108_03200	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
At1D1108_03210	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1108_03210	COG2205	protein histidine kinase activity
At1D1108_03220	COG3300	MHYT domain
At1D1108_03220	COG5001	Diguanylate cyclase
At1D1108_03230	COG3386	PFAM SMP-30 Gluconolaconase
At1D1108_03240	COG0800	Aldolase
At1D1108_03250	COG3734	2-keto-3-deoxy-galactonokinase
At1D1108_03260	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_03280	COG2197	response regulator
At1D1108_03310	COG0598	Magnesium transport protein CorA
At1D1108_03320	COG3158	transport of potassium into the cell
At1D1108_03350	COG0356	it plays a direct role in the translocation of protons across the membrane
At1D1108_03370	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
At1D1108_03380	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
At1D1108_03400	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
At1D1108_03440	COG0009	L-threonylcarbamoyladenylate synthase
At1D1108_03460	COG4638	Rieske (2fe-2S)
At1D1108_03510	COG1960	acyl-CoA dehydrogenase activity
At1D1108_03540	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
At1D1108_03550	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
At1D1108_03560	COG0840	transmembrane signaling receptor activity
At1D1108_03610	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
At1D1108_03620	COG1741	Belongs to the pirin family
At1D1108_03630	COG1722	exodeoxyribonuclease VII activity
At1D1108_03640	COG0123	including yeast histone deacetylase and acetoin utilization protein
At1D1108_03650	COG1268	BioY protein
At1D1108_03660	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
At1D1108_03670	COG1122	ATPase activity
At1D1108_03680	COG3214	Protein conserved in bacteria
At1D1108_03700	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
At1D1108_03730	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
At1D1108_03740	COG0484	heat shock protein binding
At1D1108_03760	COG0259	pyridoxamine-phosphate oxidase activity
At1D1108_03790	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
At1D1108_03810	COG0312	modulator of DNA gyrase
At1D1108_03840	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
At1D1108_03850	COG0109	protoheme IX farnesyltransferase activity
At1D1108_03870	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
At1D1108_03900	COG3346	SURF1 family
At1D1108_03910	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
At1D1108_03920	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
At1D1108_03930	COG0328	RNA-DNA hybrid ribonuclease activity
At1D1108_03950	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
At1D1108_03950	COG0678	peroxiredoxin activity
At1D1108_03970	COG1678	Uncharacterized ACR, COG1678
At1D1108_04010	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
At1D1108_04020	COG0612	Peptidase, M16
At1D1108_04050	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
At1D1108_04090	COG2189	Belongs to the N(4) N(6)-methyltransferase family
At1D1108_04130	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
At1D1108_04140	COG1196	nuclear chromosome segregation
At1D1108_04150	COG2514	catechol 2,3-dioxygenase activity
At1D1108_04160	COG0574	Belongs to the PEP-utilizing enzyme family
At1D1108_04160	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
At1D1108_04230	COG0579	oxidoreductase
At1D1108_04280	COG2895	sulfate adenylyltransferase (ATP) activity
At1D1108_04290	COG0175	sulfate reduction
At1D1108_04300	COG0175	sulfate reduction
At1D1108_04310	COG1959	2 iron, 2 sulfur cluster binding
At1D1108_04320	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
At1D1108_04330	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
At1D1108_04340	COG4208	sulfate ABC transporter
At1D1108_04350	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
At1D1108_04380	COG2203	Gaf domain
At1D1108_04380	COG2199	diguanylate cyclase activity
At1D1108_04380	COG2200	EAL domain
At1D1108_04400	COG1309	transcriptional regulator
At1D1108_04410	COG1012	belongs to the aldehyde dehydrogenase family
At1D1108_04420	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
At1D1108_04510	COG0477	Major facilitator Superfamily
At1D1108_04530	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
At1D1108_04530	COG1793	dna ligase
At1D1108_04560	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1108_04570	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1108_04580	COG1846	Transcriptional regulator
At1D1108_04590	COG1764	response to oxidative stress
At1D1108_04620	COG0488	(ABC) transporter
At1D1108_04690	COG0583	DNA-binding transcription factor activity
At1D1108_04700	COG4221	oxidoreductase activity
At1D1108_04720	COG0433	COG0433 Predicted ATPase
At1D1108_04740	COG1733	regulation of RNA biosynthetic process
At1D1108_04750	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
At1D1108_04780	COG1280	lysine exporter protein (LysE YggA)
At1D1108_04790	COG0656	L-ascorbic acid biosynthetic process
At1D1108_04820	COG4106	trans-aconitate 2-methyltransferase activity
At1D1108_04830	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
At1D1108_04840	COG0840	transmembrane signaling receptor activity
At1D1108_04880	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
At1D1108_04920	COG3909	cytochrome
At1D1108_04930	COG2010	Cytochrome c
At1D1108_04990	COG0789	Transcriptional regulator
At1D1108_05020	COG1230	cation diffusion facilitator family transporter
At1D1108_05060	COG4176	ABC-type proline glycine betaine transport system permease component
At1D1108_05100	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1108_05120	COG2169	Transcriptional regulator
At1D1108_05120	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
At1D1108_05140	COG2514	catechol 2,3-dioxygenase activity
At1D1108_05170	COG1272	protein, Hemolysin III
At1D1108_05190	COG1280	lysine exporter protein (LysE YggA)
At1D1108_05200	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
At1D1108_05220	COG2111	Na H antiporter
At1D1108_05230	COG1006	Multisubunit Na H antiporter MnhC subunit
At1D1108_05250	COG1863	multisubunit Na H antiporter MnhE subunit
At1D1108_05260	COG2212	antiporter activity
At1D1108_05270	COG1320	monovalent cation:proton antiporter activity
At1D1108_05280	COG4957	zinc ion binding
At1D1108_05310	COG2166	iron-sulfur cluster assembly
At1D1108_05330	COG2205	protein histidine kinase activity
At1D1108_05400	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
At1D1108_05450	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
At1D1108_05460	COG2983	Belongs to the UPF0260 family
At1D1108_05530	COG1621	beta-fructofuranosidase activity
At1D1108_05540	COG3920	Histidine kinase
At1D1108_05540	COG2202	Pas domain
At1D1108_05550	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
At1D1108_05660	COG4695	Portal protein
At1D1108_05840	COG0745	RESPONSE REGULATOR receiver
At1D1108_05850	COG0642	Histidine kinase
At1D1108_05870	COG4235	cytochrome complex assembly
At1D1108_05880	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
At1D1108_05890	COG1138	Cytochrome C-type biogenesis protein
At1D1108_05900	COG3088	subunit of a heme lyase
At1D1108_05910	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
At1D1108_05920	COG0745	RESPONSE REGULATOR receiver
At1D1108_05940	COG3011	Protein conserved in bacteria
At1D1108_05960	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
At1D1108_05970	COG2202	Pas domain
At1D1108_05970	COG2205	protein histidine kinase activity
At1D1108_05990	COG0308	aminopeptidase N
At1D1108_06030	COG0443	Heat shock 70 kDa protein
At1D1108_06050	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_06100	COG0604	alcohol dehydrogenase
At1D1108_06110	COG1733	regulation of RNA biosynthetic process
At1D1108_06120	COG1968	undecaprenyl-diphosphatase activity
At1D1108_06130	COG2239	Acts as a magnesium transporter
At1D1108_06140	COG2814	Major facilitator Superfamily
At1D1108_06180	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
At1D1108_06240	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
At1D1108_06320	COG0741	lytic transglycosylase activity
At1D1108_06330	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1108_06340	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
At1D1108_06350	COG0840	transmembrane signaling receptor activity
At1D1108_06370	COG1758	RNA polymerase activity
At1D1108_06410	COG0736	holo-[acyl-carrier-protein] synthase activity
At1D1108_06420	COG0681	Belongs to the peptidase S26 family
At1D1108_06430	COG0571	ribonuclease III activity
At1D1108_06440	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
At1D1108_06450	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
At1D1108_06460	COG0784	Response regulator, receiver
At1D1108_06470	COG1381	Involved in DNA repair and RecF pathway recombination
At1D1108_06490	COG2226	methyltransferase
At1D1108_06510	COG1418	mRNA catabolic process
At1D1108_06530	COG0346	lactoylglutathione lyase activity
At1D1108_06560	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1108_06570	COG3443	Belongs to the bacterial solute-binding protein 9 family
At1D1108_06580	COG0668	transmembrane transport
At1D1108_06600	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
At1D1108_06660	COG1742	UPF0060 membrane protein
At1D1108_06680	COG0745	RESPONSE REGULATOR receiver
At1D1108_06680	COG3706	GGDEF domain
At1D1108_06700	COG1183	phosphatidylcholine synthase activity
At1D1108_06710	COG0688	phosphatidylethanolamine metabolic process
At1D1108_06720	COG5265	(ABC) transporter
At1D1108_06810	COG2852	Protein conserved in bacteria
At1D1108_06820	COG0215	cysteine-tRNA ligase activity
At1D1108_06830	COG4221	oxidoreductase activity
At1D1108_06840	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
At1D1108_06850	COG1286	toxin biosynthetic process
At1D1108_06890	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
At1D1108_06910	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
At1D1108_06970	COG0359	binds to the 23S rRNA
At1D1108_06990	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
At1D1108_07000	COG0360	Binds together with S18 to 16S ribosomal RNA
At1D1108_07010	COG0667	Aldo Keto reductase
At1D1108_07020	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
At1D1108_07040	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
At1D1108_07050	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
At1D1108_07060	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
At1D1108_07070	COG1561	YicC-like family, N-terminal region
At1D1108_07080	COG0194	GDP metabolic process
At1D1108_07100	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
At1D1108_07110	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
At1D1108_07130	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
At1D1108_07160	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
At1D1108_07210	COG0488	(ABC) transporter
At1D1108_07220	COG3706	GGDEF domain
At1D1108_07240	COG0105	UTP biosynthetic process
At1D1108_07290	COG0314	molybdopterin synthase activity
At1D1108_07310	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
At1D1108_07320	COG0322	excinuclease ABC activity
At1D1108_07330	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_07350	COG0625	glutathione transferase activity
At1D1108_07380	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
At1D1108_07390	COG0243	molybdopterin cofactor binding
At1D1108_07430	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
At1D1108_07440	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
At1D1108_07450	COG0628	permease
At1D1108_07470	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
At1D1108_07480	COG0248	Ppx GppA phosphatase
At1D1108_07530	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
At1D1108_07550	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
At1D1108_07560	COG0477	Major facilitator Superfamily
At1D1108_07570	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
At1D1108_07580	COG4452	Inner membrane protein CreD
At1D1108_07590	COG0659	secondary active sulfate transmembrane transporter activity
At1D1108_07610	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
At1D1108_07630	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
At1D1108_07650	COG0113	porphobilinogen synthase activity
At1D1108_07690	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
At1D1108_07700	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
At1D1108_07710	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
At1D1108_07710	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
At1D1108_07730	COG1280	lysine exporter protein (LysE YggA)
At1D1108_07740	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
At1D1108_07750	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
At1D1108_07760	COG2814	Major facilitator Superfamily
At1D1108_07770	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
At1D1108_07810	COG0416	fatty acid biosynthetic process
At1D1108_07820	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
At1D1108_07830	COG0776	regulation of translation
At1D1108_07900	COG0601	transmembrane transport
At1D1108_07910	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_07920	COG0444	Belongs to the ABC transporter superfamily
At1D1108_07960	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
At1D1108_07970	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
At1D1108_07990	COG0745	RESPONSE REGULATOR receiver
At1D1108_07990	COG3706	GGDEF domain
At1D1108_08000	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
At1D1108_08010	COG0583	DNA-binding transcription factor activity
At1D1108_08030	COG0737	Belongs to the 5'-nucleotidase family
At1D1108_08080	COG2897	thiosulfate sulfurtransferase activity
At1D1108_08120	COG0415	Belongs to the DNA photolyase family
At1D1108_08140	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
At1D1108_08190	COG3932	Exopolysaccharide synthesis, ExoD
At1D1108_08210	COG1238	metal cluster binding
At1D1108_08240	COG4139	cobalamin transport
At1D1108_08250	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
At1D1108_08270	COG3794	PFAM blue (type 1) copper domain protein
At1D1108_08280	COG1528	Iron-storage protein
At1D1108_08410	COG1612	heme a metabolic process
At1D1108_08430	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
At1D1108_08440	COG0010	Belongs to the arginase family
At1D1108_08450	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
At1D1108_08460	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
At1D1108_08480	COG1832	CoA-binding protein
At1D1108_08520	COG2199	diguanylate cyclase activity
At1D1108_08530	COG0740	serine-type endopeptidase activity
At1D1108_08540	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
At1D1108_08550	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
At1D1108_08570	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
At1D1108_08590	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
At1D1108_08600	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
At1D1108_08610	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
At1D1108_08630	COG0649	NAD binding
At1D1108_08650	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
At1D1108_08660	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
At1D1108_08680	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
At1D1108_08690	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
At1D1108_08710	COG0713	ATP synthesis coupled electron transport
At1D1108_08740	COG1007	ATP synthesis coupled electron transport
At1D1108_08780	COG0442	prolyl-tRNA aminoacylation
At1D1108_08800	COG1136	(ABC) transporter
At1D1108_08810	COG0587	DNA-directed DNA polymerase activity
At1D1108_08830	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
At1D1108_08850	COG0784	Response regulator, receiver
At1D1108_08860	COG3706	GGDEF domain
At1D1108_08860	COG0745	RESPONSE REGULATOR receiver
At1D1108_08870	COG0267	Belongs to the bacterial ribosomal protein bL33 family
At1D1108_08880	COG0477	Major facilitator Superfamily
At1D1108_08910	COG0557	exoribonuclease II activity
At1D1108_08920	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
At1D1108_08940	COG0758	DNA mediated transformation
At1D1108_08950	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
At1D1108_08970	COG0540	Belongs to the ATCase OTCase family
At1D1108_08980	COG1960	acyl-CoA dehydrogenase activity
At1D1108_08990	COG0456	acetyltransferase
At1D1108_09030	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
At1D1108_09040	COG2824	Alkylphosphonate utilization operon protein PhnA
At1D1108_09050	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
At1D1108_09060	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
At1D1108_09070	COG0154	amidase activity
At1D1108_09080	COG3811	Belongs to the UPF0386 family
At1D1108_09110	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
At1D1108_09130	COG0456	acetyltransferase
At1D1108_09160	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
At1D1108_09180	COG0511	ligase activity, forming carbon-carbon bonds
At1D1108_09190	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
At1D1108_09210	COG0436	Aminotransferase
At1D1108_09250	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_09260	COG1530	ribonuclease E activity
At1D1108_09290	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
At1D1108_09330	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
At1D1108_09340	COG0384	phenazine biosynthesis protein PhzF
At1D1108_09380	COG0633	Ferredoxin
At1D1108_09410	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
At1D1108_09420	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
At1D1108_09440	COG3768	UPF0283 membrane protein
At1D1108_09450	COG3106	COG3106 Predicted ATPase
At1D1108_09470	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
At1D1108_09520	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
At1D1108_09590	COG0537	adenosine 5'-monophosphoramidase activity
At1D1108_09650	COG0052	Belongs to the universal ribosomal protein uS2 family
At1D1108_09660	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
At1D1108_09670	COG0528	UMP kinase activity
At1D1108_09680	COG0233	cytoplasmic translational termination
At1D1108_09690	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
At1D1108_09700	COG0575	Belongs to the CDS family
At1D1108_09710	COG0750	zinc metalloprotease
At1D1108_09720	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
At1D1108_09730	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
At1D1108_09740	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
At1D1108_09750	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
At1D1108_09760	COG3494	Protein of unknown function (DUF1009)
At1D1108_09770	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
At1D1108_09780	COG0372	Belongs to the citrate synthase family
At1D1108_09810	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
At1D1108_09830	COG2877	3-deoxy-8-phosphooctulonate synthase activity
At1D1108_09840	COG0148	phosphopyruvate hydratase activity
At1D1108_09860	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
At1D1108_09870	COG0022	dehydrogenase e1 component
At1D1108_09870	COG0508	dehydrogenase complex catalyzes the overall conversion of
At1D1108_09880	COG0508	dehydrogenase complex catalyzes the overall conversion of
At1D1108_09900	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
At1D1108_09920	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
At1D1108_09930	COG0697	spore germination
At1D1108_09970	COG2867	negative regulation of translational initiation
At1D1108_09980	COG1546	Belongs to the CinA family
At1D1108_09990	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
At1D1108_09990	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
At1D1108_10010	COG3852	Histidine kinase
At1D1108_10020	COG2204	response regulator
At1D1108_10030	COG5000	phosphorelay sensor kinase activity
At1D1108_10040	COG2204	response regulator
At1D1108_10050	COG0569	domain protein
At1D1108_10060	COG1923	regulation of RNA biosynthetic process
At1D1108_10070	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
At1D1108_10080	COG3956	TIGRFAM MazG family protein
At1D1108_10100	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
At1D1108_10100	COG1648	precorrin-2 dehydrogenase activity
At1D1108_10180	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
At1D1108_10180	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
At1D1108_10190	COG0509	glycine decarboxylation via glycine cleavage system
At1D1108_10200	COG0404	The glycine cleavage system catalyzes the degradation of glycine
At1D1108_10260	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
At1D1108_10270	COG0564	pseudouridine synthase activity
At1D1108_10280	COG0546	phosphoglycolate phosphatase activity
At1D1108_10320	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
At1D1108_10340	COG1671	Belongs to the UPF0178 family
At1D1108_10360	COG0450	alkyl hydroperoxide reductase
At1D1108_10440	COG2801	Transposase and inactivated derivatives
At1D1108_10450	COG0583	DNA-binding transcription factor activity
At1D1108_10460	COG2828	Protein conserved in bacteria
At1D1108_10490	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1108_10500	COG4191	Histidine kinase
At1D1108_10500	COG0784	Response regulator, receiver
At1D1108_10510	COG0784	Response regulator, receiver
At1D1108_10520	COG2202	Pas domain
At1D1108_10520	COG3920	Histidine kinase
At1D1108_10530	COG0784	Response regulator, receiver
At1D1108_10530	COG4191	Histidine kinase
At1D1108_10590	COG0673	inositol 2-dehydrogenase activity
At1D1108_10610	COG1609	Transcriptional regulator
At1D1108_10620	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_10630	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_10640	COG1129	ABC transporter
At1D1108_10650	COG1879	ABC-type sugar transport system periplasmic component
At1D1108_10660	COG0328	RNA-DNA hybrid ribonuclease activity
At1D1108_10680	COG2226	methyltransferase
At1D1108_10700	COG0321	lipoyl(octanoyl) transferase activity
At1D1108_10700	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
At1D1108_10710	COG0084	hydrolase, TatD family'
At1D1108_10720	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
At1D1108_10740	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
At1D1108_10830	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
At1D1108_10840	COG2095	MarC family integral membrane protein
At1D1108_10860	COG0629	single-stranded DNA binding
At1D1108_10870	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
At1D1108_10890	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
At1D1108_10900	COG0179	Fumarylacetoacetate (FAA) hydrolase
At1D1108_10930	COG1108	ABC-type Mn2 Zn2 transport systems permease components
At1D1108_10940	COG1121	(ABC) transporter
At1D1108_10950	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
At1D1108_10980	COG0667	Aldo Keto reductase
At1D1108_11000	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
At1D1108_11150	COG2239	Acts as a magnesium transporter
At1D1108_11160	COG0243	molybdopterin cofactor binding
At1D1108_11180	COG0242	peptide deformylase activity
At1D1108_11230	COG0321	lipoyl(octanoyl) transferase activity
At1D1108_11240	COG1064	alcohol dehydrogenase
At1D1108_11340	COG2124	cytochrome p450
At1D1108_11400	COG0626	cystathionine gamma-synthase activity
At1D1108_11410	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1108_11420	COG4597	amino acid ABC transporter
At1D1108_11430	COG0765	amino acid transport
At1D1108_11440	COG1126	abc transporter atp-binding protein
At1D1108_11450	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
At1D1108_11480	COG0436	Aminotransferase
At1D1108_11540	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
At1D1108_11560	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
At1D1108_11570	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
At1D1108_11580	COG0635	Involved in the biosynthesis of porphyrin-containing compound
At1D1108_11610	COG3243	poly(R)-hydroxyalkanoic acid synthase
At1D1108_11620	COG1489	DNA binding
At1D1108_11630	COG0024	Methionine aminopeptidase
At1D1108_11640	COG2003	Belongs to the UPF0758 family
At1D1108_11670	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
At1D1108_11700	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
At1D1108_11710	COG0546	phosphoglycolate phosphatase activity
At1D1108_11740	COG0114	fumarate hydratase activity
At1D1108_11760	COG0504	CTP synthase activity
At1D1108_11780	COG0149	triose-phosphate isomerase activity
At1D1108_11800	COG0187	DNA topoisomerase II activity
At1D1108_11810	COG0740	serine-type endopeptidase activity
At1D1108_11830	COG0640	Transcriptional regulator
At1D1108_11840	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
At1D1108_11890	COG3264	Mechanosensitive ion channel
At1D1108_11890	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
At1D1108_11970	COG2963	transposase activity
At1D1108_11980	COG3436	PFAM IS66 Orf2 family protein
At1D1108_11990	COG4372	Transposase
At1D1108_12000	COG0501	Belongs to the peptidase M48B family
At1D1108_12060	COG1609	Transcriptional regulator
At1D1108_12060	COG2207	Transcriptional regulator
At1D1108_12220	COG1475	DNA binding
At1D1108_12340	COG1127	ABC transporter
At1D1108_12350	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
At1D1108_12360	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1108_12380	COG0280	phosphate acetyltransferase
At1D1108_12380	COG0281	malic enzyme
At1D1108_12400	COG0778	Nitroreductase
At1D1108_12410	COG0823	Involved in the tonB-independent uptake of proteins
At1D1108_12440	COG1368	sulfuric ester hydrolase activity
At1D1108_12500	COG0544	peptidyl-prolyl cis-trans isomerase activity
At1D1108_12540	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
At1D1108_12580	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
At1D1108_12630	COG0512	Glutamine amidotransferase of anthranilate synthase
At1D1108_12630	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
At1D1108_12640	COG0343	queuine tRNA-ribosyltransferase activity
At1D1108_12650	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
At1D1108_12660	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
At1D1108_12670	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
At1D1108_12680	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
At1D1108_12720	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
At1D1108_12730	COG0134	indole-3-glycerol-phosphate synthase activity
At1D1108_12740	COG0315	cyclic pyranopterin monophosphate synthase activity
At1D1108_12750	COG0303	'Molybdopterin
At1D1108_12760	COG3706	GGDEF domain
At1D1108_12780	COG0475	glutathione-regulated potassium exporter activity
At1D1108_12780	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
At1D1108_12800	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
At1D1108_12810	COG0697	spore germination
At1D1108_12820	COG2814	Major facilitator Superfamily
At1D1108_12830	COG0746	molybdenum cofactor guanylyltransferase activity
At1D1108_12840	COG1763	Mo-molybdopterin cofactor biosynthetic process
At1D1108_12850	COG0739	heme binding
At1D1108_12860	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
At1D1108_12870	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
At1D1108_12880	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
At1D1108_12890	COG0805	protein transport
At1D1108_12900	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
At1D1108_12910	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
At1D1108_12920	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
At1D1108_12930	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
At1D1108_12940	COG1472	Belongs to the glycosyl hydrolase 3 family
At1D1108_12960	COG0018	arginyl-trna synthetase
At1D1108_12970	COG0232	Belongs to the dGTPase family. Type 2 subfamily
At1D1108_12980	COG0316	Belongs to the HesB IscA family
At1D1108_13010	COG2067	long-chain fatty acid transport protein
At1D1108_13020	COG0525	valine-tRNA ligase activity
At1D1108_13040	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
At1D1108_13110	COG0655	NAD(P)H dehydrogenase (quinone) activity
At1D1108_13120	COG1058	Belongs to the CinA family
At1D1108_13120	COG1546	Belongs to the CinA family
At1D1108_13130	COG0589	response to stress
At1D1108_13140	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
At1D1108_13150	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
At1D1108_13170	COG1914	H( )-stimulated, divalent metal cation uptake system
At1D1108_13190	COG1132	(ABC) transporter
At1D1108_13200	COG0628	permease
At1D1108_13270	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
At1D1108_13290	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
At1D1108_13310	COG0302	gtp cyclohydrolase
At1D1108_13320	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
At1D1108_13330	COG1752	Esterase of the alpha-beta hydrolase superfamily
At1D1108_13340	COG0517	IMP dehydrogenase activity
At1D1108_13340	COG0516	GMP reductase activity
At1D1108_13400	COG1760	l-serine dehydratase
At1D1108_13470	COG0583	DNA-binding transcription factor activity
At1D1108_13500	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
At1D1108_13500	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
At1D1108_13510	COG0347	Belongs to the P(II) protein family
At1D1108_13520	COG0174	glutamine synthetase
At1D1108_13580	COG0697	spore germination
At1D1108_13600	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
At1D1108_13620	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
At1D1108_13680	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
At1D1108_13690	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
At1D1108_13700	COG2186	Transcriptional regulator
At1D1108_13740	COG1129	ABC transporter
At1D1108_13750	COG1183	phosphatidylcholine synthase activity
At1D1108_13760	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D1108_13770	COG0679	Auxin Efflux Carrier
At1D1108_13780	COG0785	Cytochrome C biogenesis protein
At1D1108_13830	COG0346	lactoylglutathione lyase activity
At1D1108_13840	COG1278	Cold shock
At1D1108_13930	COG0577	efflux transmembrane transporter activity
At1D1108_13930	COG1136	(ABC) transporter
At1D1108_13940	COG0577	efflux transmembrane transporter activity
At1D1108_13940	COG1136	(ABC) transporter
At1D1108_13970	COG2151	metal-sulfur cluster biosynthetic enzyme
At1D1108_13980	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
At1D1108_13990	COG0719	Fe-S assembly protein
At1D1108_14000	COG0396	ATPase activity
At1D1108_14010	COG0719	Fe-S assembly protein
At1D1108_14020	COG1104	cysteine desulfurase activity
At1D1108_14030	COG2945	thiolester hydrolase activity
At1D1108_14040	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
At1D1108_14050	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
At1D1108_14070	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
At1D1108_14080	COG2833	Protein of unknown function (DUF455)
At1D1108_14090	COG0739	heme binding
At1D1108_14100	COG0513	Belongs to the DEAD box helicase family
At1D1108_14150	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
At1D1108_14170	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
At1D1108_14180	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
At1D1108_14190	COG0047	phosphoribosylformylglycinamidine synthase activity
At1D1108_14220	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D1108_14240	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
At1D1108_14280	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
At1D1108_14290	COG2814	Major facilitator Superfamily
At1D1108_14300	COG0483	inositol monophosphate 1-phosphatase activity
At1D1108_14310	COG0483	inositol monophosphate 1-phosphatase activity
At1D1108_14320	COG0037	tRNA processing
At1D1108_14330	COG2066	Belongs to the glutaminase family
At1D1108_14340	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
At1D1108_14350	COG0861	Integral membrane protein TerC family
At1D1108_14390	COG1280	lysine exporter protein (LysE YggA)
At1D1108_14420	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
At1D1108_14430	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
At1D1108_14450	COG0538	isocitrate dehydrogenase activity
At1D1108_14480	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
At1D1108_14490	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
At1D1108_14500	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1108_14510	COG2313	pseudouridylate synthase activity
At1D1108_14530	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1108_14540	COG4215	(ABC) transporter
At1D1108_14560	COG5425	PFAM Usg family protein
At1D1108_14580	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D1108_14590	COG1522	sequence-specific DNA binding
At1D1108_14600	COG1573	uracil-dna glycosylase
At1D1108_14620	COG2205	protein histidine kinase activity
At1D1108_14620	COG2202	Pas domain
At1D1108_14640	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
At1D1108_14650	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
At1D1108_14680	COG0842	Transport permease protein
At1D1108_14690	COG1131	(ABC) transporter
At1D1108_14700	COG0730	response to heat
At1D1108_14720	COG0840	transmembrane signaling receptor activity
At1D1108_14720	COG0840	transmembrane signaling receptor activity
At1D1108_14740	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
At1D1108_14750	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
At1D1108_14780	COG0129	dihydroxy-acid dehydratase activity
At1D1108_14790	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
At1D1108_14800	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
At1D1108_14820	COG3739	integral membrane protein
At1D1108_14840	COG0203	ribosomal protein L17
At1D1108_14850	COG0202	RNA polymerase activity
At1D1108_14860	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
At1D1108_14870	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
At1D1108_14880	COG0563	adenylate kinase activity
At1D1108_14890	COG0201	protein transport
At1D1108_14900	COG0200	Binds to the 23S rRNA
At1D1108_14910	COG1841	ribosomal large subunit assembly
At1D1108_14920	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
At1D1108_14930	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
At1D1108_14940	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
At1D1108_14950	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
At1D1108_14960	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
At1D1108_14970	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
At1D1108_14980	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
At1D1108_14990	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
At1D1108_15000	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
At1D1108_15010	COG0255	Belongs to the universal ribosomal protein uL29 family
At1D1108_15020	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
At1D1108_15030	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
At1D1108_15040	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
At1D1108_15050	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
At1D1108_15060	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
At1D1108_15070	COG0089	rRNA binding
At1D1108_15080	COG0088	Forms part of the polypeptide exit tunnel
At1D1108_15090	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
At1D1108_15100	COG0051	transcription antitermination factor activity, RNA binding
At1D1108_15110	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
At1D1108_15120	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
At1D1108_15130	COG0049	tRNA binding
At1D1108_15140	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
At1D1108_15170	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
At1D1108_15180	COG0085	RNA polymerase activity
At1D1108_15190	COG0222	ribosome binding
At1D1108_15200	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
At1D1108_15210	COG0081	regulation of translation
At1D1108_15220	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
At1D1108_15260	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
At1D1108_15270	COG0861	Integral membrane protein TerC family
At1D1108_15320	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
At1D1108_15330	COG1607	acyl-coa hydrolase
At1D1108_15380	COG2910	NAD(P)H-binding
At1D1108_15390	COG1733	regulation of RNA biosynthetic process
At1D1108_15410	COG0556	nucleotide-excision repair
At1D1108_15420	COG2382	esterase
At1D1108_15460	COG0484	heat shock protein binding
At1D1108_15500	COG3842	ATPase activity
At1D1108_15520	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D1108_15530	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D1108_15560	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
At1D1108_15590	COG2207	Transcriptional regulator
At1D1108_15600	COG1064	alcohol dehydrogenase
At1D1108_15610	COG1252	NADH dehydrogenase
At1D1108_15620	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
At1D1108_15630	COG2197	response regulator
At1D1108_15640	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
At1D1108_15650	COG1090	epimerase
At1D1108_15730	COG0656	L-ascorbic acid biosynthetic process
At1D1108_15760	COG0440	acetolactate synthase activity
At1D1108_15770	COG0028	Belongs to the TPP enzyme family
At1D1108_15790	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
At1D1108_15800	COG3830	Belongs to the UPF0237 family
At1D1108_15800	COG0560	Phosphoserine phosphatase
At1D1108_15840	COG0330	HflC and HflK could
At1D1108_15850	COG0330	HflC and HflK could
At1D1108_15870	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
At1D1108_15940	COG0277	FAD linked oxidase domain protein
At1D1108_15970	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
At1D1108_16080	COG1335	isochorismatase
At1D1108_16120	COG0006	proline dipeptidase activity
At1D1108_16140	COG2264	protein methyltransferase activity
At1D1108_16150	COG1999	signal sequence binding
At1D1108_16170	COG0835	chemotaxis
At1D1108_16190	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
At1D1108_16200	COG0583	DNA-binding transcription factor activity
At1D1108_16220	COG1247	-acetyltransferase
At1D1108_16240	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
At1D1108_16250	COG1280	lysine exporter protein (LysE YggA)
At1D1108_16260	COG0497	DNA recombination
At1D1108_16270	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
At1D1108_16290	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
At1D1108_16300	COG0849	cell division
At1D1108_16310	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
At1D1108_16320	COG1181	Belongs to the D-alanine--D-alanine ligase family
At1D1108_16330	COG0477	Major facilitator Superfamily
At1D1108_16340	COG3706	GGDEF domain
At1D1108_16350	COG0812	UDP-N-acetylmuramate dehydrogenase activity
At1D1108_16360	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
At1D1108_16370	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
At1D1108_16390	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
At1D1108_16400	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
At1D1108_16420	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
At1D1108_16450	COG0275	rRNA processing
At1D1108_16460	COG2001	Belongs to the MraZ family
At1D1108_16500	COG3023	N-Acetylmuramoyl-L-alanine amidase
At1D1108_16510	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
At1D1108_16560	COG4106	trans-aconitate 2-methyltransferase activity
At1D1108_16620	COG2267	carboxylic ester hydrolase activity
At1D1108_16630	COG1804	L-carnitine dehydratase bile acid-inducible protein F
At1D1108_16660	COG0251	oxidation-reduction process
At1D1108_16690	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1108_16700	COG2814	Major facilitator Superfamily
At1D1108_16750	COG1012	belongs to the aldehyde dehydrogenase family
At1D1108_16760	COG0174	glutamine synthetase
At1D1108_16770	COG0531	amino acid
At1D1108_16790	COG1737	Transcriptional regulator
At1D1108_16830	COG3842	ATPase activity
At1D1108_16940	COG2968	Membrane
At1D1108_16960	COG0432	Pfam Uncharacterised protein family UPF0047
At1D1108_16990	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
At1D1108_17000	COG0358	DNA primase activity
At1D1108_17020	COG0505	Belongs to the CarA family
At1D1108_17030	COG0534	Mate efflux family protein
At1D1108_17060	COG2321	neutral zinc metallopeptidase
At1D1108_17090	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
At1D1108_17100	COG3706	GGDEF domain
At1D1108_17110	COG1573	uracil-dna glycosylase
At1D1108_17130	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
At1D1108_17150	COG1522	sequence-specific DNA binding
At1D1108_17160	COG0492	ferredoxin-NADP+ reductase activity
At1D1108_17170	COG0583	DNA-binding transcription factor activity
At1D1108_17190	COG1902	pentaerythritol trinitrate reductase activity
At1D1108_17240	COG0387	Pfam Sodium calcium exchanger
At1D1108_17260	COG2200	EAL domain
At1D1108_17260	COG2199	diguanylate cyclase activity
At1D1108_17290	COG1278	Cold shock
At1D1108_17300	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
At1D1108_17320	COG1846	Transcriptional regulator
At1D1108_17330	COG0745	RESPONSE REGULATOR receiver
At1D1108_17340	COG2205	protein histidine kinase activity
At1D1108_17350	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
At1D1108_17400	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
At1D1108_17450	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
At1D1108_17470	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
At1D1108_17490	COG0463	Glycosyl transferase, family 2
At1D1108_17500	COG0840	transmembrane signaling receptor activity
At1D1108_17510	COG1012	belongs to the aldehyde dehydrogenase family
At1D1108_17530	COG3300	MHYT domain
At1D1108_17530	COG5001	Diguanylate cyclase
At1D1108_17540	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
At1D1108_17550	COG5001	Diguanylate cyclase
At1D1108_17570	COG0193	aminoacyl-tRNA hydrolase activity
At1D1108_17590	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
At1D1108_17630	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
At1D1108_17640	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
At1D1108_17660	COG2857	Cytochrome c1
At1D1108_17660	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
At1D1108_17700	COG1132	(ABC) transporter
At1D1108_17710	COG1132	(ABC) transporter
At1D1108_17730	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
At1D1108_17760	COG0408	coproporphyrinogen oxidase activity
At1D1108_17790	COG0617	tRNA 3'-terminal CCA addition
At1D1108_17820	COG0714	Associated with various cellular activities
At1D1108_17860	COG0454	-acetyltransferase
At1D1108_17870	COG0477	Major facilitator Superfamily
At1D1108_17890	COG0435	Glutathione S-transferase
At1D1108_17920	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
At1D1108_17930	COG3135	benzoate transporter
At1D1108_17940	COG4944	Protein of unknown function (DUF1109)
At1D1108_17970	COG0740	serine-type endopeptidase activity
At1D1108_18000	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
At1D1108_18010	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
At1D1108_18060	COG4175	Glycine betaine
At1D1108_18090	COG1435	thymidine kinase activity
At1D1108_18130	COG2862	Uncharacterized protein family, UPF0114
At1D1108_18160	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
At1D1108_18160	COG0512	Glutamine amidotransferase of anthranilate synthase
At1D1108_18180	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
At1D1108_18200	COG0366	Alpha amylase catalytic
At1D1108_18210	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1108_18240	COG1160	GTP binding
At1D1108_18280	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
At1D1108_18300	COG0024	Methionine aminopeptidase
At1D1108_18320	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_18340	COG1529	Aldehyde oxidase and xanthine dehydrogenase
At1D1108_18360	COG0583	DNA-binding transcription factor activity
At1D1108_18390	COG0402	S-adenosylhomocysteine deaminase activity
At1D1108_18410	COG1304	FMN binding
At1D1108_18430	COG1309	transcriptional regulator
At1D1108_18440	COG1686	Belongs to the peptidase S11 family
At1D1108_18460	COG2351	hydroxyisourate hydrolase activity
At1D1108_18470	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
At1D1108_18520	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
At1D1108_18540	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1108_18540	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
At1D1108_18550	COG5002	protein histidine kinase activity
At1D1108_18550	COG2205	protein histidine kinase activity
At1D1108_18550	COG0784	Response regulator, receiver
At1D1108_18560	COG0513	Belongs to the DEAD box helicase family
At1D1108_18580	COG2259	Doxx family
At1D1108_18590	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1108_18610	COG2308	Evidence 4 Homologs of previously reported genes of
At1D1108_18630	COG1305	Transglutaminase-like
At1D1108_18690	COG4214	carbohydrate transport
At1D1108_18700	COG1129	ABC transporter
At1D1108_18710	COG4213	ABC transporter substrate-binding protein
At1D1108_18780	COG0840	transmembrane signaling receptor activity
At1D1108_18810	COG4215	(ABC) transporter
At1D1108_18820	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1108_18880	COG1215	transferase activity, transferring glycosyl groups
At1D1108_18910	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
At1D1108_18940	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
At1D1108_18950	COG2346	COG2346, Truncated hemoglobins
At1D1108_18990	COG1309	transcriptional regulator
At1D1108_19020	COG0494	nUDIX hydrolase
At1D1108_19040	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1108_19050	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1108_19110	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
At1D1108_19120	COG0830	nickel cation binding
At1D1108_19130	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
At1D1108_19160	COG0804	urea catabolic process
At1D1108_19170	COG1442	glycosyl transferase family 8
At1D1108_19180	COG3755	Protein conserved in bacteria
At1D1108_19200	COG0832	Belongs to the urease beta subunit family
At1D1108_19210	COG3813	Protein conserved in bacteria
At1D1108_19220	COG0831	urea catabolic process
At1D1108_19230	COG0829	nickel cation binding
At1D1108_19260	COG0411	ABC transporter
At1D1108_19280	COG0559	Belongs to the binding-protein-dependent transport system permease family
At1D1108_19310	COG0174	glutamine synthetase
At1D1108_19320	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_19330	COG2198	Histidine kinase
At1D1108_19330	COG5002	protein histidine kinase activity
At1D1108_19330	COG0784	Response regulator, receiver
At1D1108_19390	COG0411	ABC transporter
At1D1108_19420	COG1218	3'(2'),5'-bisphosphate nucleotidase
At1D1108_19580	COG0564	pseudouridine synthase activity
At1D1108_19610	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
At1D1108_19630	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
At1D1108_19680	COG0346	lactoylglutathione lyase activity
At1D1108_19700	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
At1D1108_19720	COG2832	Protein of unknown function (DUF454)
At1D1108_19730	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
At1D1108_19740	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1108_19750	COG4558	Periplasmic binding protein
At1D1108_19780	COG3721	Heme iron utilization protein
At1D1108_19820	COG2205	protein histidine kinase activity
At1D1108_19900	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1108_19910	COG4605	iron ion homeostasis
At1D1108_19920	COG4604	ABC transporter, ATP-binding protein
At1D1108_19930	COG0783	Belongs to the Dps family
At1D1108_19950	COG0840	transmembrane signaling receptor activity
At1D1108_19950	COG2972	Histidine kinase
At1D1108_19970	COG2814	Major facilitator Superfamily
At1D1108_19990	COG0583	DNA-binding transcription factor activity
At1D1108_20010	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1108_20050	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
At1D1108_20060	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
At1D1108_20070	COG0288	reversible hydration of carbon dioxide
At1D1108_20090	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
At1D1108_20120	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
At1D1108_20130	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D1108_20140	COG0778	Nitroreductase
At1D1108_20150	COG2267	carboxylic ester hydrolase activity
At1D1108_20160	COG0251	oxidation-reduction process
At1D1108_20170	COG1335	isochorismatase
At1D1108_20180	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1108_20200	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1108_20230	COG1175	transmembrane transport
At1D1108_20240	COG0395	ABC-type sugar transport system, permease component
At1D1108_20250	COG3842	ATPase activity
At1D1108_20260	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1108_20280	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
At1D1108_20310	COG4608	Belongs to the ABC transporter superfamily
At1D1108_20320	COG0444	Belongs to the ABC transporter superfamily
At1D1108_20340	COG0601	transmembrane transport
At1D1108_20380	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
At1D1108_20380	COG0392	lysyltransferase activity
At1D1108_20460	COG2159	amidohydrolase
At1D1108_20520	COG0745	RESPONSE REGULATOR receiver
At1D1108_20540	COG1902	pentaerythritol trinitrate reductase activity
At1D1108_20540	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D1108_20550	COG3842	ATPase activity
At1D1108_20570	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D1108_20580	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D1108_20620	COG1192	Involved in chromosome partitioning
At1D1108_20630	COG2201	protein-glutamate methylesterase activity
At1D1108_20640	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
At1D1108_20650	COG0835	chemotaxis
At1D1108_20660	COG0840	transmembrane signaling receptor activity
At1D1108_20670	COG0835	chemotaxis
At1D1108_20680	COG2198	Histidine kinase
At1D1108_20680	COG0643	Histidine kinase
At1D1108_20690	COG0745	RESPONSE REGULATOR receiver
At1D1108_20800	COG0277	FAD linked oxidase domain protein
At1D1108_20820	COG1017	nitric oxide dioxygenase activity
At1D1108_20820	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
At1D1108_20830	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
At1D1108_20850	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1108_20860	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
At1D1108_20880	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
At1D1108_20900	COG1509	lysine 2,3-aminomutase activity
At1D1108_20930	COG0583	DNA-binding transcription factor activity
At1D1108_20940	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1108_20950	COG0725	ABC transporter, periplasmic molybdate-binding protein
At1D1108_20960	COG4149	molybdate abc transporter
At1D1108_20970	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
At1D1108_21000	COG2022	thiamine diphosphate biosynthetic process
At1D1108_21030	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
At1D1108_21040	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
At1D1108_21060	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
At1D1108_21100	COG1132	(ABC) transporter
At1D1108_21110	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
At1D1108_21160	COG0438	transferase activity, transferring glycosyl groups
At1D1108_21200	COG4166	transmembrane transport
At1D1108_21210	COG0601	transmembrane transport
At1D1108_21220	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_21240	COG0438	transferase activity, transferring glycosyl groups
At1D1108_21250	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
At1D1108_21260	COG3142	Participates in the control of copper homeostasis
At1D1108_21270	COG2814	Major facilitator Superfamily
At1D1108_21300	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_21310	COG1737	Transcriptional regulator
At1D1108_21330	COG3842	ATPase activity
At1D1108_21350	COG0395	ABC-type sugar transport system, permease component
At1D1108_21400	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
At1D1108_21410	COG1940	carbohydrate kinase activity
At1D1108_21430	COG0671	phosphoesterase, PA-phosphatase related
At1D1108_21440	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
At1D1108_21450	COG0156	8-amino-7-oxononanoate synthase activity
At1D1108_21470	COG0729	surface antigen
At1D1108_21490	COG0835	chemotaxis
At1D1108_21510	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
At1D1108_21520	COG0355	proton-transporting ATP synthase activity, rotational mechanism
At1D1108_21530	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
At1D1108_21540	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
At1D1108_21550	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
At1D1108_21560	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
At1D1108_21590	COG4974	Belongs to the 'phage' integrase family
At1D1108_21640	COG1280	lysine exporter protein (LysE YggA)
At1D1108_21660	COG0508	dehydrogenase complex catalyzes the overall conversion of
At1D1108_21680	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
At1D1108_21690	COG0045	succinate-CoA ligase (ADP-forming) activity
At1D1108_21700	COG0039	L-malate dehydrogenase activity
At1D1108_21710	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
At1D1108_21780	COG2264	protein methyltransferase activity
At1D1108_21810	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
At1D1108_21820	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
At1D1108_21830	COG0181	hydroxymethylbilane synthase activity
At1D1108_21910	COG1872	DUF167
At1D1108_21920	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
At1D1108_21950	COG0339	signal peptide processing
At1D1108_21970	COG1846	Transcriptional regulator
At1D1108_21990	COG0137	argininosuccinate synthase activity
At1D1108_22010	COG1280	lysine exporter protein (LysE YggA)
At1D1108_22030	COG4120	Belongs to the binding-protein-dependent transport system permease family
At1D1108_22050	COG0820	rRNA (adenine-C2-)-methyltransferase activity
At1D1108_22080	COG2154	pterin-4-alpha-carbinolamine dehydratase
At1D1108_22090	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
At1D1108_22100	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
At1D1108_22120	COG4181	ATPase activity
At1D1108_22140	COG0670	Belongs to the BI1 family
At1D1108_22170	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
At1D1108_22180	COG4133	protoheme IX ABC transporter activity
At1D1108_22190	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
At1D1108_22200	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
At1D1108_22230	COG3706	GGDEF domain
At1D1108_22250	COG2917	probably involved in intracellular septation
At1D1108_22260	COG0552	protein localization to endoplasmic reticulum
At1D1108_22270	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
At1D1108_22280	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
At1D1108_22300	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
At1D1108_22310	COG0287	Prephenate dehydrogenase
At1D1108_22310	COG1605	Chorismate mutase
At1D1108_22320	COG0228	four-way junction DNA binding
At1D1108_22330	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
At1D1108_22340	COG0336	Belongs to the RNA methyltransferase TrmD family
At1D1108_22360	COG0335	large ribosomal subunit rRNA binding
At1D1108_22370	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
At1D1108_22380	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1108_22410	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
At1D1108_22420	COG4783	chaperone-mediated protein folding
At1D1108_22430	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
At1D1108_22490	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
At1D1108_22510	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
At1D1108_22520	COG0142	geranyltranstransferase activity
At1D1108_22530	COG2885	chlorophyll binding
At1D1108_22540	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
At1D1108_22550	COG2223	nitrite transmembrane transporter activity
At1D1108_22560	COG1349	DNA-binding transcription factor activity
At1D1108_22570	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
At1D1108_22580	COG2197	response regulator
At1D1108_22590	COG1132	(ABC) transporter
At1D1108_22600	COG3459	Glycosyltransferase 36 associated
At1D1108_22610	COG1473	amidohydrolase
At1D1108_22630	COG0579	oxidoreductase
At1D1108_22650	COG0129	dihydroxy-acid dehydratase activity
At1D1108_22660	COG2084	Dehydrogenase
At1D1108_22670	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1108_22680	COG0277	FAD linked oxidase domain protein
At1D1108_22690	COG2186	Transcriptional regulator
At1D1108_22710	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
At1D1108_22720	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1108_22730	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1108_22740	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
At1D1108_22770	COG0495	leucyl-tRNA aminoacylation
At1D1108_22810	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
At1D1108_22830	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D1108_22840	COG1946	Acyl-CoA thioesterase
At1D1108_22850	COG0347	Belongs to the P(II) protein family
At1D1108_22860	COG0004	ammonium transporteR
At1D1108_22870	COG1674	ftsk spoiiie
At1D1108_22880	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
At1D1108_22910	COG0745	RESPONSE REGULATOR receiver
At1D1108_22930	COG1329	Transcriptional regulator
At1D1108_22940	COG2902	Dehydrogenase
At1D1108_22950	COG2270	Major facilitator Superfamily
At1D1108_22980	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_23010	COG0494	nUDIX hydrolase
At1D1108_23030	COG0793	Belongs to the peptidase S41A family
At1D1108_23050	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
At1D1108_23060	COG0799	negative regulation of ribosome biogenesis
At1D1108_23070	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
At1D1108_23080	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
At1D1108_23090	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
At1D1108_23100	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
At1D1108_23130	COG0211	Belongs to the bacterial ribosomal protein bL27 family
At1D1108_23140	COG0261	This protein binds to 23S rRNA in the presence of protein L20
At1D1108_23190	COG0066	3-isopropylmalate dehydratase activity
At1D1108_23200	COG0473	3-isopropylmalate dehydrogenase activity
At1D1108_23210	COG1858	cytochrome C peroxidase
At1D1108_23220	COG1797	cobyrinic acid a,c-diamide synthase activity
At1D1108_23230	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
At1D1108_23230	COG1648	precorrin-2 dehydrogenase activity
At1D1108_23240	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
At1D1108_23370	COG1492	cobalamin metabolic process
At1D1108_23400	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1108_23410	COG3254	rhamnose metabolic process
At1D1108_23420	COG0246	Mannitol dehydrogenase
At1D1108_23430	COG1063	alcohol dehydrogenase
At1D1108_23470	COG4214	carbohydrate transport
At1D1108_23480	COG1129	ABC transporter
At1D1108_23490	COG2186	Transcriptional regulator
At1D1108_23500	COG2721	sulfolactate sulfo-lyase activity
At1D1108_23510	COG0138	bifunctional purine biosynthesis protein purh
At1D1108_23530	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
At1D1108_23530	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
At1D1108_23540	COG0501	Belongs to the peptidase M48B family
At1D1108_23560	COG1475	DNA binding
At1D1108_23570	COG1192	Involved in chromosome partitioning
At1D1108_23580	COG0357	Ribosomal RNA small subunit methyltransferase G
At1D1108_23590	COG0445	tRNA wobble uridine modification
At1D1108_23600	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
At1D1108_23610	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
At1D1108_23630	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
At1D1108_23640	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
At1D1108_23650	COG0424	maF-like protein
At1D1108_23660	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
At1D1108_23670	COG0237	dephospho-CoA kinase activity
At1D1108_23680	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
At1D1108_23690	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
At1D1108_23720	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
At1D1108_23750	COG0187	DNA topoisomerase II activity
At1D1108_23770	COG0179	Fumarylacetoacetate (FAA) hydrolase
At1D1108_23800	COG0135	phosphoribosylanthranilate isomerase activity
At1D1108_23810	COG0133	tryptophan synthase activity
At1D1108_23820	COG0159	tryptophan synthase activity
At1D1108_23830	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
At1D1108_23840	COG0285	dihydrofolate synthase activity
At1D1108_23860	COG1074	ATP-dependent DNA helicase activity
At1D1108_23880	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
At1D1108_23890	COG0802	atpase or kinase
At1D1108_23900	COG2205	protein histidine kinase activity
At1D1108_23910	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
At1D1108_23920	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
At1D1108_23930	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
At1D1108_23930	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
At1D1108_23940	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
At1D1108_23950	COG0642	Histidine kinase
At1D1108_23960	COG0745	RESPONSE REGULATOR receiver
At1D1108_23970	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
At1D1108_23990	COG1652	LysM domain
At1D1108_24000	COG1072	(Pantothenic acid kinase))
At1D1108_24010	COG0140	phosphoribosyl-ATP diphosphatase activity
At1D1108_24020	COG0107	imidazoleglycerol-phosphate synthase activity
At1D1108_24030	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
At1D1108_24040	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
At1D1108_24060	COG0131	Imidazoleglycerol-phosphate dehydratase
At1D1108_24070	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
At1D1108_24080	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
At1D1108_24100	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
At1D1108_24130	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
At1D1108_24150	COG1643	Atp-dependent helicase
At1D1108_24160	COG0514	ATP-dependent DNA helicase (RecQ)
At1D1108_24210	COG1072	(Pantothenic acid kinase))
At1D1108_24230	COG1780	Probably involved in ribonucleotide reductase function
At1D1108_24270	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
At1D1108_24320	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1108_24340	COG2813	Specifically methylates the guanine in position
At1D1108_24350	COG1185	polyribonucleotide nucleotidyltransferase activity
At1D1108_24360	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
At1D1108_24370	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
At1D1108_24380	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
At1D1108_24390	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
At1D1108_24390	COG3064	Membrane
At1D1108_24420	COG0779	Required for maturation of 30S ribosomal subunits
At1D1108_24430	COG2814	Major facilitator Superfamily
At1D1108_24440	COG2951	lytic endotransglycosylase activity
At1D1108_24450	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
At1D1108_24470	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
At1D1108_24480	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
At1D1108_24500	COG2816	NAD+ diphosphatase activity
At1D1108_24510	COG1605	Chorismate mutase
At1D1108_24510	COG0077	Prephenate dehydratase
At1D1108_24520	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
At1D1108_24530	COG3474	cytochrome
At1D1108_24550	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
At1D1108_24560	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
At1D1108_24570	COG1278	Cold shock
At1D1108_24580	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
At1D1108_24600	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
At1D1108_24600	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
At1D1108_24620	COG0333	Belongs to the bacterial ribosomal protein bL32 family
At1D1108_24680	COG2900	Belongs to the SlyX family
At1D1108_24700	COG0484	heat shock protein binding
At1D1108_24710	COG0443	Heat shock 70 kDa protein
At1D1108_24730	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
At1D1108_24780	COG0295	cytidine deaminase activity
At1D1108_24800	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
At1D1108_24810	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
At1D1108_24830	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
At1D1108_24840	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
At1D1108_24850	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
At1D1108_24870	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
At1D1108_24880	COG1845	cytochrome c oxidase, subunit III
At1D1108_24890	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
At1D1108_24900	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
At1D1108_24910	COG0477	Major facilitator Superfamily
At1D1108_24920	COG0067	glutamate synthase
At1D1108_24920	COG0069	glutamate synthase activity
At1D1108_24920	COG0070	glutamate synthase
At1D1108_24930	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
At1D1108_24960	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
At1D1108_24980	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
At1D1108_25050	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1108_25090	COG0848	biopolymer transport protein
At1D1108_25120	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
At1D1108_25150	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
At1D1108_25160	COG3454	Phosphonate metabolism
At1D1108_25170	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
At1D1108_25180	COG3639	organic phosphonate transmembrane transporter activity
At1D1108_25190	COG3639	organic phosphonate transmembrane transporter activity
At1D1108_25210	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
At1D1108_25230	COG4778	phosphonate C-P lyase system protein PhnL
At1D1108_25240	COG4107	phosphonate C-P lyase system protein PhnK
At1D1108_25250	COG3627	carbon phosphorus lyase activity
At1D1108_25270	COG3626	phosphonate metabolism
At1D1108_25280	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
At1D1108_25290	COG3624	Phosphonate C-P lyase system protein PhnG
At1D1108_25300	COG2188	Transcriptional regulator
At1D1108_25310	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
At1D1108_25320	COG0837	glucose binding
At1D1108_25330	COG1803	Methylglyoxal synthase
At1D1108_25340	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
At1D1108_25350	COG4166	transmembrane transport
At1D1108_25360	COG4174	ABC transporter (Permease)
At1D1108_25370	COG4239	(ABC) transporter, permease
At1D1108_25380	COG4172	Belongs to the ABC transporter superfamily
At1D1108_25390	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1108_25400	COG0174	glutamine synthetase
At1D1108_25410	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1108_25420	COG3265	gluconokinase activity
At1D1108_25430	COG1174	glycine betaine transport
At1D1108_25440	COG1125	glycine betaine transport
At1D1108_25450	COG1174	glycine betaine transport
At1D1108_25460	COG1732	Glycine betaine
At1D1108_25480	COG1959	2 iron, 2 sulfur cluster binding
At1D1108_25490	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D1108_25530	COG0697	spore germination
At1D1108_25560	COG0791	NLP P60 protein
At1D1108_25580	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
At1D1108_25590	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
At1D1108_25660	COG4964	Belongs to the GSP D family
At1D1108_25730	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
At1D1108_25740	COG3422	double-strand break repair
At1D1108_25750	COG3757	hydrolase, family 25
At1D1108_25760	COG0697	spore germination
At1D1108_25770	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D1108_25830	COG0481	GTPase activity
At1D1108_25840	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
At1D1108_25900	COG1917	Cupin 2, conserved barrel domain protein
At1D1108_25900	COG2169	Transcriptional regulator
At1D1108_25910	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
At1D1108_25960	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
At1D1108_25970	COG0291	Belongs to the bacterial ribosomal protein bL35 family
At1D1108_25980	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
At1D1108_26000	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
At1D1108_26010	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
At1D1108_26010	COG0072	phenylalanine-tRNA ligase activity
At1D1108_26020	COG0667	Aldo Keto reductase
At1D1108_26050	COG0667	Aldo Keto reductase
At1D1108_26060	COG4977	sequence-specific DNA binding
At1D1108_26110	COG1570	exodeoxyribonuclease VII activity
At1D1108_26120	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1108_26140	COG1846	Transcriptional regulator
At1D1108_26150	COG0697	spore germination
At1D1108_26160	COG2309	aminopeptidase activity
At1D1108_26180	COG1393	Belongs to the ArsC family
At1D1108_26210	COG0518	GMP synthase (glutamine-hydrolyzing) activity
At1D1108_26210	COG0519	Catalyzes the synthesis of GMP from XMP
At1D1108_26240	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
At1D1108_26300	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
At1D1108_26320	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
At1D1108_26340	COG1968	undecaprenyl-diphosphatase activity
At1D1108_26370	COG0284	orotidine-5'-phosphate decarboxylase activity
At1D1108_26390	COG3963	phosphatidate phosphatase activity
At1D1108_26400	COG0592	DNA-directed DNA polymerase activity
At1D1108_26410	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
At1D1108_26420	COG0792	nuclease activity
At1D1108_26450	COG1175	transmembrane transport
At1D1108_26460	COG0395	ABC-type sugar transport system, permease component
At1D1108_26470	COG3842	ATPase activity
At1D1108_26490	COG0189	ligase activity
At1D1108_26510	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
At1D1108_26520	COG1280	lysine exporter protein (LysE YggA)
At1D1108_26530	COG0756	dUTP diphosphatase activity
At1D1108_26540	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
At1D1108_26550	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
At1D1108_26580	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
At1D1108_26590	COG2226	methyltransferase
At1D1108_26600	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
At1D1108_26610	COG1024	Enoyl-CoA hydratase
At1D1108_26620	COG0268	Binds directly to 16S ribosomal RNA
At1D1108_26690	COG4372	Transposase
At1D1108_26750	COG3547	Transposase (IS116 IS110 IS902 family)
At1D1108_26760	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
At1D1108_26820	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
At1D1108_26990	COG0745	RESPONSE REGULATOR receiver
At1D1108_27000	COG2205	protein histidine kinase activity
At1D1108_27030	COG1764	response to oxidative stress
At1D1108_27050	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
At1D1108_27070	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1108_27090	COG1414	Transcriptional regulator
At1D1108_27120	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_27160	COG1522	sequence-specific DNA binding
At1D1108_27230	COG0747	negative chemotaxis
At1D1108_27240	COG0601	transmembrane transport
At1D1108_27250	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_27260	COG4172	Belongs to the ABC transporter superfamily
At1D1108_27270	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1108_27280	COG1027	Aspartate ammonia-lyase
At1D1108_27290	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1108_27300	COG1126	abc transporter atp-binding protein
At1D1108_27310	COG0765	amino acid transport
At1D1108_27320	COG0765	amino acid transport
At1D1108_27330	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1108_27360	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1108_27370	COG1802	Transcriptional regulator
At1D1108_27380	COG3842	ATPase activity
At1D1108_27390	COG4209	transmembrane transport
At1D1108_27400	COG0395	ABC-type sugar transport system, permease component
At1D1108_27410	COG1653	transport
At1D1108_27430	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_27450	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D1108_27470	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1108_27490	COG0071	Belongs to the small heat shock protein (HSP20) family
At1D1108_27520	COG0438	transferase activity, transferring glycosyl groups
At1D1108_27560	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
At1D1108_27610	COG1216	Glycosyl transferase, family 2
At1D1108_27630	COG2197	response regulator
At1D1108_27640	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
At1D1108_27650	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
At1D1108_27660	COG4310	Domain of unknown function (DUF2172)
At1D1108_27670	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
At1D1108_27690	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
At1D1108_27700	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
At1D1108_27710	COG2197	response regulator
At1D1108_27760	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1108_27840	COG4178	(ABC) transporter
At1D1108_27850	COG3706	GGDEF domain
At1D1108_27880	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
At1D1108_27900	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
At1D1108_27920	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
At1D1108_27940	COG4303	Ethanolamine ammonia lyase large subunit
At1D1108_27950	COG1177	transmembrane transport
At1D1108_27960	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1108_27970	COG3842	ATPase activity
At1D1108_28000	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
At1D1108_28030	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1108_28040	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_28050	COG0601	transmembrane transport
At1D1108_28060	COG0747	negative chemotaxis
At1D1108_28120	COG1522	sequence-specific DNA binding
At1D1108_28150	COG0477	Major facilitator Superfamily
At1D1108_28160	COG0583	DNA-binding transcription factor activity
At1D1108_28200	COG0583	DNA-binding transcription factor activity
At1D1108_28220	COG0747	negative chemotaxis
At1D1108_28230	COG0601	transmembrane transport
At1D1108_28270	COG1278	Cold shock
At1D1108_28310	COG0784	Response regulator, receiver
At1D1108_28310	COG2198	Histidine kinase
At1D1108_28310	COG5002	protein histidine kinase activity
At1D1108_28320	COG4172	Belongs to the ABC transporter superfamily
At1D1108_28330	COG0405	Gamma-glutamyltransferase
At1D1108_28350	COG0601	transmembrane transport
At1D1108_28360	COG0747	negative chemotaxis
At1D1108_28370	COG2186	Transcriptional regulator
At1D1108_28450	COG1595	DNA-templated transcription, initiation
At1D1108_28470	COG0395	ABC-type sugar transport system, permease component
At1D1108_28480	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1108_28500	COG3842	ATPase activity
At1D1108_28520	COG0765	amino acid transport
At1D1108_28530	COG0765	amino acid transport
At1D1108_28540	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1108_28550	COG2186	Transcriptional regulator
At1D1108_28580	COG1063	alcohol dehydrogenase
At1D1108_28590	COG3284	Transcriptional regulator
At1D1108_28650	COG1653	transport
At1D1108_28660	COG1175	transmembrane transport
At1D1108_28670	COG0395	ABC-type sugar transport system, permease component
At1D1108_28680	COG3842	ATPase activity
At1D1108_28700	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D1108_28710	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1108_28720	COG1116	anion transmembrane transporter activity
At1D1108_28730	COG0395	ABC-type sugar transport system, permease component
At1D1108_28740	COG1175	transmembrane transport
At1D1108_28800	COG1609	Transcriptional regulator
At1D1108_28830	COG1082	Xylose isomerase domain protein TIM barrel
At1D1108_28840	COG3842	ATPase activity
At1D1108_28850	COG0395	ABC-type sugar transport system, permease component
At1D1108_28860	COG1175	transmembrane transport
At1D1108_28870	COG1653	transport
At1D1108_28880	COG1309	transcriptional regulator
At1D1108_28890	COG0673	inositol 2-dehydrogenase activity
At1D1108_28920	COG0673	inositol 2-dehydrogenase activity
At1D1108_28940	COG1278	Cold shock
At1D1108_28960	COG0828	Belongs to the bacterial ribosomal protein bS21 family
At1D1108_29030	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
At1D1108_29040	COG1136	(ABC) transporter
At1D1108_29040	COG0577	efflux transmembrane transporter activity
At1D1108_29050	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1108_29080	COG0745	RESPONSE REGULATOR receiver
At1D1108_29090	COG2205	protein histidine kinase activity
At1D1108_29100	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
At1D1108_29140	COG0395	ABC-type sugar transport system, permease component
At1D1108_29150	COG1175	transmembrane transport
At1D1108_29190	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1108_29200	COG3618	amidohydrolase
At1D1108_29210	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1108_29220	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1108_29230	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_29240	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
At1D1108_29250	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1108_29260	COG2186	Transcriptional regulator
At1D1108_29290	COG0667	Aldo Keto reductase
At1D1108_29360	COG2223	nitrite transmembrane transporter activity
At1D1108_29370	COG0583	DNA-binding transcription factor activity
At1D1108_29380	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1108_29400	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1108_29410	COG2084	Dehydrogenase
At1D1108_29440	COG1609	Transcriptional regulator
At1D1108_29450	COG1063	alcohol dehydrogenase
At1D1108_29460	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_29480	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1108_29490	COG4573	that is required for full activity and stability of the Y subunit. Could have a chaperone-like function for the proper and stable folding of
At1D1108_29500	COG1175	transmembrane transport
At1D1108_29510	COG0395	ABC-type sugar transport system, permease component
At1D1108_29540	COG0395	ABC-type sugar transport system, permease component
At1D1108_29570	COG0626	cystathionine gamma-synthase activity
At1D1108_29590	COG0803	Belongs to the bacterial solute-binding protein 9 family
At1D1108_29610	COG1121	(ABC) transporter
At1D1108_29620	COG0523	cobalamin synthesis protein
At1D1108_29650	COG0523	cobalamin synthesis protein
At1D1108_29660	COG1653	transport
At1D1108_29670	COG1175	transmembrane transport
At1D1108_29680	COG0395	ABC-type sugar transport system, permease component
At1D1108_29690	COG3842	ATPase activity
At1D1108_29710	COG3047	cAMP biosynthetic process
At1D1108_29770	COG0583	DNA-binding transcription factor activity
At1D1108_29780	COG1879	ABC-type sugar transport system periplasmic component
At1D1108_29790	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_29800	COG1129	ABC transporter
At1D1108_29810	COG5002	protein histidine kinase activity
At1D1108_29810	COG3447	MASE1 domain protein
At1D1108_29810	COG5001	Diguanylate cyclase
At1D1108_29820	COG3257	ureidoglycine aminohydrolase activity
At1D1108_29840	COG5001	Diguanylate cyclase
At1D1108_29850	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
At1D1108_29870	COG0747	negative chemotaxis
At1D1108_29880	COG0601	transmembrane transport
At1D1108_29890	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_29900	COG4172	Belongs to the ABC transporter superfamily
At1D1108_29910	COG4608	Belongs to the ABC transporter superfamily
At1D1108_29920	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
At1D1108_29940	COG0129	dihydroxy-acid dehydratase activity
At1D1108_29950	COG1879	ABC-type sugar transport system periplasmic component
At1D1108_29960	COG1129	ABC transporter
At1D1108_29970	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_29980	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_29990	COG2186	Transcriptional regulator
At1D1108_30020	COG0587	DNA-directed DNA polymerase activity
At1D1108_30030	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
At1D1108_30070	COG0673	inositol 2-dehydrogenase activity
At1D1108_30090	COG3842	ATPase activity
At1D1108_30100	COG0395	ABC-type sugar transport system, permease component
At1D1108_30110	COG1175	transmembrane transport
At1D1108_30120	COG1653	transport
At1D1108_30140	COG0673	inositol 2-dehydrogenase activity
At1D1108_30170	COG5001	Diguanylate cyclase
At1D1108_30200	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
At1D1108_30210	COG2894	cell division
At1D1108_30220	COG0850	regulation of cytokinetic process
At1D1108_30230	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
At1D1108_30240	COG2186	Transcriptional regulator
At1D1108_30250	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1108_30270	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1108_30280	COG1063	alcohol dehydrogenase
At1D1108_30290	COG1312	Catalyzes the dehydration of D-mannonate
At1D1108_30320	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1108_30330	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1108_30340	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1108_30360	COG0640	Transcriptional regulator
At1D1108_30370	COG0625	glutathione transferase activity
At1D1108_30380	COG4172	Belongs to the ABC transporter superfamily
At1D1108_30390	COG1921	L-seryl-tRNASec selenium transferase activity
At1D1108_30420	COG3964	amidohydrolase
At1D1108_30440	COG0601	transmembrane transport
At1D1108_30450	COG0747	negative chemotaxis
At1D1108_30460	COG0438	transferase activity, transferring glycosyl groups
At1D1108_30550	COG4989	oxidoreductase activity
At1D1108_30580	COG3842	ATPase activity
At1D1108_30590	COG1653	transport
At1D1108_30600	COG1175	transmembrane transport
At1D1108_30610	COG0395	ABC-type sugar transport system, permease component
At1D1108_30620	COG1501	Belongs to the glycosyl hydrolase 31 family
At1D1108_30640	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1108_30650	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D1108_30660	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
At1D1108_30670	COG0352	thiamine-phosphate diphosphorylase activity
At1D1108_30680	COG0351	phosphomethylpyrimidine kinase
At1D1108_30700	COG1522	sequence-specific DNA binding
At1D1108_30710	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
At1D1108_30720	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1108_30750	COG2204	response regulator
At1D1108_30760	COG4191	Histidine kinase
At1D1108_30770	COG1301	dicarboxylic acid transport
At1D1108_30790	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
At1D1108_30800	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_30860	COG1215	transferase activity, transferring glycosyl groups
At1D1108_30880	COG2942	2-epimerase
At1D1108_30930	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1108_30950	COG2197	response regulator
At1D1108_31010	COG3307	-O-antigen
At1D1108_31020	COG1596	polysaccharide export
At1D1108_31030	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
At1D1108_31060	COG2972	Histidine kinase
At1D1108_31060	COG0840	transmembrane signaling receptor activity
At1D1108_31070	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1108_31090	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_31110	COG2094	Belongs to the DNA glycosylase MPG family
At1D1108_31140	COG1609	Transcriptional regulator
At1D1108_31150	COG1653	transport
At1D1108_31180	COG3842	ATPase activity
At1D1108_31200	COG0673	inositol 2-dehydrogenase activity
At1D1108_31210	COG0602	queuosine metabolic process
At1D1108_31220	COG0720	synthase
At1D1108_31230	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
At1D1108_31260	COG0673	inositol 2-dehydrogenase activity
At1D1108_31290	COG0395	ABC-type sugar transport system, permease component
At1D1108_31360	COG0583	DNA-binding transcription factor activity
At1D1108_31370	COG0280	phosphate acetyltransferase
At1D1108_31370	COG0281	malic enzyme
At1D1108_31410	COG0765	amino acid transport
At1D1108_31420	COG1126	abc transporter atp-binding protein
At1D1108_31430	COG2079	MmgE PrpD family protein
At1D1108_31460	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1108_31490	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
At1D1108_31510	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
At1D1108_31520	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
At1D1108_31530	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_31540	COG1129	ABC transporter
At1D1108_31560	COG1473	amidohydrolase
At1D1108_31570	COG0747	negative chemotaxis
At1D1108_31610	COG0601	transmembrane transport
At1D1108_31620	COG0583	DNA-binding transcription factor activity
At1D1108_31630	COG1446	asparaginase
At1D1108_31660	COG0747	negative chemotaxis
At1D1108_31710	COG0601	transmembrane transport
At1D1108_31720	COG2197	response regulator
At1D1108_31730	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1108_31740	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
At1D1108_31780	COG1595	DNA-templated transcription, initiation
At1D1108_31790	COG1120	ATPase activity
At1D1108_31800	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1108_31830	COG2226	methyltransferase
At1D1108_31850	COG1120	ATPase activity
At1D1108_31860	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1108_31900	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
At1D1108_31930	COG1012	belongs to the aldehyde dehydrogenase family
At1D1108_31940	COG0473	3-isopropylmalate dehydrogenase activity
At1D1108_31950	COG1012	belongs to the aldehyde dehydrogenase family
At1D1108_31960	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1108_32020	COG0601	transmembrane transport
At1D1108_32030	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_32040	COG4172	Belongs to the ABC transporter superfamily
At1D1108_32050	COG1522	sequence-specific DNA binding
At1D1108_32090	COG1126	abc transporter atp-binding protein
At1D1108_32110	COG1473	amidohydrolase
At1D1108_32120	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1108_32130	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1108_32140	COG1959	2 iron, 2 sulfur cluster binding
At1D1108_32160	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D1108_32170	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1108_32210	COG1960	acyl-CoA dehydrogenase activity
At1D1108_32230	COG0747	negative chemotaxis
At1D1108_32260	COG0444	Belongs to the ABC transporter superfamily
At1D1108_32280	COG0667	Aldo Keto reductase
At1D1108_32300	COG0583	DNA-binding transcription factor activity
At1D1108_32340	COG0747	negative chemotaxis
At1D1108_32350	COG1473	amidohydrolase
At1D1108_32360	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1108_32400	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1108_32450	COG4608	Belongs to the ABC transporter superfamily
At1D1108_32460	COG0444	Belongs to the ABC transporter superfamily
At1D1108_32480	COG0601	transmembrane transport
At1D1108_32500	COG2186	Transcriptional regulator
At1D1108_32530	COG0300	oxidoreductase activity
At1D1108_32550	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
At1D1108_32550	COG3453	Protein conserved in bacteria
At1D1108_32560	COG0640	Transcriptional regulator
At1D1108_32580	COG2391	methyltransferase activity
At1D1108_32590	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
At1D1108_32610	COG0022	dehydrogenase e1 component
At1D1108_32630	COG1960	acyl-CoA dehydrogenase activity
At1D1108_32640	COG0183	Belongs to the thiolase family
At1D1108_32660	COG1960	acyl-CoA dehydrogenase activity
At1D1108_32670	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
At1D1108_32700	COG1024	Enoyl-CoA hydratase
At1D1108_32710	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
At1D1108_32720	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
At1D1108_32730	COG4952	isomerase
At1D1108_32740	COG3347	Dehydrogenase
At1D1108_32740	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_32750	COG1349	DNA-binding transcription factor activity
At1D1108_32760	COG1879	ABC-type sugar transport system periplasmic component
At1D1108_32770	COG1129	ABC transporter
At1D1108_32780	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_32790	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_32800	COG3254	rhamnose metabolic process
At1D1108_32830	COG2264	protein methyltransferase activity
At1D1108_32840	COG5001	Diguanylate cyclase
At1D1108_32870	COG4335	DNA alkylation repair
At1D1108_32880	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
At1D1108_32890	COG4208	sulfate ABC transporter
At1D1108_32910	COG4150	thiosulfate binding
At1D1108_32920	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
At1D1108_32950	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
At1D1108_32970	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
At1D1108_32990	COG1040	competence protein
At1D1108_33000	COG2226	methyltransferase
At1D1108_33030	COG0494	nUDIX hydrolase
At1D1108_33050	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
At1D1108_33060	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
At1D1108_33070	COG0653	protein targeting
At1D1108_33190	COG2244	polysaccharide biosynthetic process
At1D1108_33220	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
At1D1108_33280	COG0438	transferase activity, transferring glycosyl groups
At1D1108_33290	COG0438	transferase activity, transferring glycosyl groups
At1D1108_33320	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
At1D1108_33330	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
At1D1108_33330	COG2273	Hydrolase Family 16
At1D1108_33360	COG3842	ATPase activity
At1D1108_33370	COG3833	ABC-type maltose transport systems, permease component
At1D1108_33480	COG1396	sequence-specific DNA binding
At1D1108_33500	COG1129	ABC transporter
At1D1108_33510	COG4214	carbohydrate transport
At1D1108_33520	COG4213	ABC transporter substrate-binding protein
At1D1108_33590	COG0625	glutathione transferase activity
At1D1108_33600	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
At1D1108_33610	COG3800	Transcriptional regulator
At1D1108_33610	COG1396	sequence-specific DNA binding
At1D1108_33630	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
At1D1108_33650	COG0300	oxidoreductase activity
At1D1108_33670	COG2096	Adenosyltransferase
At1D1108_33690	COG2086	electron transfer activity
At1D1108_33710	COG1250	3-hydroxyacyl-CoA dehydrogenase
At1D1108_33720	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
At1D1108_33730	COG0165	Argininosuccinate lyase
At1D1108_33800	COG2884	Cell division ATP-binding protein ftsE
At1D1108_33840	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
At1D1108_33870	COG0287	Prephenate dehydrogenase
At1D1108_33880	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
At1D1108_33890	COG2226	methyltransferase
At1D1108_33900	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
At1D1108_33940	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
At1D1108_34010	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
At1D1108_34020	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
At1D1108_34040	COG4974	Belongs to the 'phage' integrase family
At1D1108_34050	COG0825	malonyl-CoA metabolic process
At1D1108_34060	COG3034	peptidoglycan biosynthetic process
At1D1108_34080	COG0523	cobalamin synthesis protein
At1D1108_34090	COG1686	Belongs to the peptidase S11 family
At1D1108_34100	COG1473	amidohydrolase
At1D1108_34120	COG4953	penicillin-binding protein 1C
At1D1108_34130	COG2373	Large extracellular alpha-helical protein
At1D1108_34140	COG2835	tetraacyldisaccharide 4'-kinase activity
At1D1108_34160	COG3118	belongs to the thioredoxin family
At1D1108_34490	COG0740	serine-type endopeptidase activity
At1D1108_34740	COG0629	single-stranded DNA binding
At1D1108_34780	COG0592	DNA-directed DNA polymerase activity
At1D1108_34830	COG0482	sulfurtransferase activity
At1D1108_34860	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
At1D1108_34890	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
At1D1108_34900	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
At1D1108_34910	COG0037	tRNA processing
At1D1108_34930	COG2885	chlorophyll binding
At1D1108_34940	COG0823	Involved in the tonB-independent uptake of proteins
At1D1108_34980	COG0824	Thioesterase
At1D1108_35000	COG0494	nUDIX hydrolase
At1D1108_35030	COG2255	four-way junction helicase activity
At1D1108_35040	COG0632	four-way junction helicase activity
At1D1108_35050	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
At1D1108_35060	COG0840	transmembrane signaling receptor activity
At1D1108_35060	COG2972	Histidine kinase
At1D1108_35070	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1108_35080	COG0217	transcriptional regulatory protein
At1D1108_35110	COG1692	metallophosphoesterase
At1D1108_35130	COG1253	flavin adenine dinucleotide binding
At1D1108_35210	COG0126	phosphoglycerate kinase activity
At1D1108_35220	COG3588	fructose-bisphosphate aldolase
At1D1108_35270	COG0254	rRNA binding
At1D1108_35280	COG1132	(ABC) transporter
At1D1108_35320	COG0483	inositol monophosphate 1-phosphatase activity
At1D1108_35380	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
At1D1108_35390	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
At1D1108_35400	COG0257	Belongs to the bacterial ribosomal protein bL36 family
At1D1108_35410	COG0457	Tetratricopeptide repeat
At1D1108_35420	COG3750	Belongs to the UPF0335 family
At1D1108_35460	COG0469	pyruvate kinase activity
At1D1108_35470	COG3108	Peptidase M15
At1D1108_35480	COG2204	response regulator
At1D1108_35490	COG1164	Oligoendopeptidase f
At1D1108_35500	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
At1D1108_35510	COG3706	GGDEF domain
At1D1108_35520	COG5310	Homospermidine synthase
At1D1108_35540	COG0737	Belongs to the 5'-nucleotidase family
At1D1108_35550	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
At1D1108_35560	COG0330	HflC and HflK could
At1D1108_35610	COG1210	Utp--glucose-1-phosphate uridylyltransferase
At1D1108_35620	COG2951	lytic endotransglycosylase activity
At1D1108_35650	COG2205	protein histidine kinase activity
At1D1108_35670	COG0069	glutamate synthase activity
At1D1108_35670	COG0067	glutamate synthase
At1D1108_35670	COG0070	glutamate synthase
At1D1108_35700	COG2205	protein histidine kinase activity
At1D1108_35710	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
At1D1108_35720	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
At1D1108_35740	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
At1D1108_35760	COG0252	asparaginase activity
At1D1108_35780	COG1027	Aspartate ammonia-lyase
At1D1108_35790	COG2186	Transcriptional regulator
At1D1108_35800	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
At1D1108_35840	COG3239	Fatty acid desaturase
At1D1108_35880	COG0583	DNA-binding transcription factor activity
At1D1108_35910	COG3842	ATPase activity
At1D1108_35920	COG1177	transmembrane transport
At1D1108_35930	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1108_35960	COG1012	belongs to the aldehyde dehydrogenase family
At1D1108_35970	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1108_35990	COG2267	carboxylic ester hydrolase activity
At1D1108_36020	COG1126	abc transporter atp-binding protein
At1D1108_36070	COG0174	glutamine synthetase
At1D1108_36080	COG0069	glutamate synthase activity
At1D1108_36090	COG2218	PFAM glutamate synthase alpha subunit domain protein
At1D1108_36100	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
At1D1108_36130	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1108_36160	COG0601	transmembrane transport
At1D1108_36170	COG0747	negative chemotaxis
At1D1108_36190	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
At1D1108_36200	COG1454	alcohol dehydrogenase
At1D1108_36210	COG2186	Transcriptional regulator
At1D1108_36250	COG1607	acyl-coa hydrolase
At1D1108_36300	COG2308	Evidence 4 Homologs of previously reported genes of
At1D1108_36300	COG2307	Protein conserved in bacteria
At1D1108_36330	COG0488	(ABC) transporter
At1D1108_36340	COG1304	FMN binding
At1D1108_36350	COG1846	Transcriptional regulator
At1D1108_36360	COG0840	transmembrane signaling receptor activity
At1D1108_36370	COG1070	Carbohydrate kinase
At1D1108_36380	COG1830	Aldolase
At1D1108_36390	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
At1D1108_36400	COG0667	Aldo Keto reductase
At1D1108_36420	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_36430	COG1129	ABC transporter
At1D1108_36490	COG0071	Belongs to the small heat shock protein (HSP20) family
At1D1108_36520	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
At1D1108_36550	COG0395	ABC-type sugar transport system, permease component
At1D1108_36570	COG3842	ATPase activity
At1D1108_36580	COG3842	ATPase activity
At1D1108_36610	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
At1D1108_36610	COG1648	precorrin-2 dehydrogenase activity
At1D1108_36620	COG0243	molybdopterin cofactor binding
At1D1108_36650	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
At1D1108_36660	COG1116	anion transmembrane transporter activity
At1D1108_36670	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1108_36680	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D1108_36700	COG3707	response regulator
At1D1108_36710	COG1802	Transcriptional regulator
At1D1108_36720	COG1914	H( )-stimulated, divalent metal cation uptake system
At1D1108_36730	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
At1D1108_36740	COG4336	lyase activity
At1D1108_36750	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
At1D1108_36760	COG4770	biotin carboxylase activity
At1D1108_36770	COG0366	Alpha amylase catalytic
At1D1108_36780	COG0789	Transcriptional regulator
At1D1108_36790	COG4771	TonB-dependent receptor
At1D1108_36800	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
At1D1108_36840	COG1414	Transcriptional regulator
At1D1108_36850	COG1475	DNA binding
At1D1108_36860	COG1192	Involved in chromosome partitioning
At1D1108_36920	COG0596	Alpha beta hydrolase
At1D1108_36930	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
At1D1108_36950	COG2986	histidine ammonia-lyase
At1D1108_36960	COG1228	amidohydrolase
At1D1108_36970	COG0402	S-adenosylhomocysteine deaminase activity
At1D1108_36990	COG0511	ligase activity, forming carbon-carbon bonds
At1D1108_37000	COG0439	Biotin carboxylase
At1D1108_37030	COG1984	allophanate hydrolase subunit 2
At1D1108_37040	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
At1D1108_37070	COG4221	oxidoreductase activity
At1D1108_37080	COG0765	amino acid transport
At1D1108_37090	COG0765	amino acid transport
At1D1108_37100	COG1126	abc transporter atp-binding protein
At1D1108_37110	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1108_37120	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
At1D1108_37140	COG1126	abc transporter atp-binding protein
At1D1108_37160	COG0765	amino acid transport
At1D1108_37190	COG0640	Transcriptional regulator
At1D1108_37210	COG0431	NADPH-dependent FMN reductase
At1D1108_37230	COG0798	PFAM Bile acid sodium symporter
At1D1108_37250	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
At1D1108_37260	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1108_37280	COG3842	ATPase activity
At1D1108_37290	COG0395	ABC-type sugar transport system, permease component
At1D1108_37300	COG1175	transmembrane transport
At1D1108_37320	COG0673	inositol 2-dehydrogenase activity
At1D1108_37330	COG0673	inositol 2-dehydrogenase activity
At1D1108_37400	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D1108_37410	COG0583	DNA-binding transcription factor activity
At1D1108_37420	COG0477	Major facilitator Superfamily
At1D1108_37440	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1108_37460	COG4172	Belongs to the ABC transporter superfamily
At1D1108_37470	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_37480	COG0601	transmembrane transport
At1D1108_37490	COG0747	negative chemotaxis
At1D1108_37510	COG0277	FAD linked oxidase domain protein
At1D1108_37550	COG2205	protein histidine kinase activity
At1D1108_37560	COG0745	RESPONSE REGULATOR receiver
At1D1108_37570	COG0671	phosphoesterase, PA-phosphatase related
At1D1108_37670	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
At1D1108_37690	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
At1D1108_37700	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
At1D1108_37710	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
At1D1108_37740	COG2423	ornithine cyclodeaminase activity
At1D1108_37750	COG0697	spore germination
At1D1108_37760	COG0673	inositol 2-dehydrogenase activity
At1D1108_37810	COG0477	Major facilitator Superfamily
At1D1108_37820	COG0642	Histidine kinase
At1D1108_37830	COG0745	RESPONSE REGULATOR receiver
At1D1108_37840	COG2194	sulfuric ester hydrolase activity
At1D1108_37860	COG0583	DNA-binding transcription factor activity
At1D1108_37870	COG4774	siderophore transport
At1D1108_37900	COG1120	ATPase activity
At1D1108_37930	COG2137	regulation of response to DNA damage stimulus
At1D1108_37940	COG3386	PFAM SMP-30 Gluconolaconase
At1D1108_37960	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_37970	COG1129	ABC transporter
At1D1108_37980	COG1879	ABC-type sugar transport system periplasmic component
At1D1108_38080	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
At1D1108_38090	COG4585	Histidine kinase
At1D1108_38100	COG2197	response regulator
At1D1108_38120	COG2133	pyrroloquinoline quinone binding
At1D1108_38140	COG0500	methyltransferase
At1D1108_38150	COG0564	pseudouridine synthase activity
At1D1108_38180	COG4175	Glycine betaine
At1D1108_38180	COG0517	IMP dehydrogenase activity
At1D1108_38190	COG4176	ABC-type proline glycine betaine transport system permease component
At1D1108_38210	COG4191	Histidine kinase
At1D1108_38210	COG0784	Response regulator, receiver
At1D1108_38230	COG0489	protein tyrosine kinase activity
At1D1108_38230	COG3206	protein involved in exopolysaccharide biosynthesis
At1D1108_38240	COG1210	Utp--glucose-1-phosphate uridylyltransferase
At1D1108_38250	COG1215	transferase activity, transferring glycosyl groups
At1D1108_38260	COG1215	transferase activity, transferring glycosyl groups
At1D1108_38270	COG1215	transferase activity, transferring glycosyl groups
At1D1108_38280	COG0438	transferase activity, transferring glycosyl groups
At1D1108_38290	COG2273	Hydrolase Family 16
At1D1108_38300	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
At1D1108_38310	COG2244	polysaccharide biosynthetic process
At1D1108_38320	COG0463	Glycosyl transferase, family 2
At1D1108_38330	COG2327	Polysaccharide pyruvyl transferase
At1D1108_38340	COG1215	transferase activity, transferring glycosyl groups
At1D1108_38380	COG0828	Belongs to the bacterial ribosomal protein bS21 family
At1D1108_38390	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1108_38420	COG0404	The glycine cleavage system catalyzes the degradation of glycine
At1D1108_38420	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D1108_38470	COG1523	belongs to the glycosyl hydrolase 13 family
At1D1108_38480	COG0033	Phosphoglucomutase
At1D1108_38490	COG0297	glycogen (starch) synthase activity
At1D1108_38500	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
At1D1108_38510	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
At1D1108_38520	COG0058	SHG alpha-glucan phosphorylase activity
At1D1108_38540	COG1794	racemase activity, acting on amino acids and derivatives
At1D1108_38550	COG1522	sequence-specific DNA binding
At1D1108_38570	COG2084	Dehydrogenase
At1D1108_38580	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_38590	COG1063	alcohol dehydrogenase
At1D1108_38610	COG4988	ABC transporter
At1D1108_38620	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
At1D1108_38640	COG1294	oxidase, subunit
At1D1108_38700	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
At1D1108_38710	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
At1D1108_38760	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
At1D1108_38770	COG0539	negative regulation of cytoplasmic translation
At1D1108_38830	COG4221	oxidoreductase activity
At1D1108_38840	COG0006	proline dipeptidase activity
At1D1108_38850	COG0747	negative chemotaxis
At1D1108_38860	COG0601	transmembrane transport
At1D1108_38870	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_38880	COG0444	Belongs to the ABC transporter superfamily
At1D1108_38890	COG4608	Belongs to the ABC transporter superfamily
At1D1108_38920	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1108_38950	COG0411	ABC transporter
At1D1108_38960	COG0410	ABC transporter
At1D1108_38970	COG0559	Belongs to the binding-protein-dependent transport system permease family
At1D1108_39010	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
At1D1108_39020	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_39060	COG4993	Dehydrogenase
At1D1108_39070	COG3685	Protein conserved in bacteria
At1D1108_39090	COG0693	protein deglycase activity
At1D1108_39140	COG0189	ligase activity
At1D1108_39150	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1108_39160	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
At1D1108_39180	COG0435	Glutathione S-transferase
At1D1108_39190	COG0583	DNA-binding transcription factor activity
At1D1108_39200	COG1012	belongs to the aldehyde dehydrogenase family
At1D1108_39210	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D1108_39220	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1108_39230	COG1116	anion transmembrane transporter activity
At1D1108_39250	COG1522	sequence-specific DNA binding
At1D1108_39280	COG0784	Response regulator, receiver
At1D1108_39320	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
At1D1108_39350	COG0019	diaminopimelate decarboxylase activity
At1D1108_39380	COG0527	aspartate kinase activity
At1D1108_39400	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
At1D1108_39410	COG2890	protein-(glutamine-N5) methyltransferase activity
At1D1108_39430	COG0542	response to heat
At1D1108_39440	COG0741	lytic transglycosylase activity
At1D1108_39440	COG1196	nuclear chromosome segregation
At1D1108_39440	COG0739	heme binding
At1D1108_39450	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
At1D1108_39460	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
At1D1108_39490	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
At1D1108_39500	COG1309	transcriptional regulator
At1D1108_39510	COG4221	oxidoreductase activity
At1D1108_39520	COG1902	pentaerythritol trinitrate reductase activity
At1D1108_39530	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_39540	COG0604	alcohol dehydrogenase
At1D1108_39560	COG0243	molybdopterin cofactor binding
At1D1108_39570	COG2814	Major facilitator Superfamily
At1D1108_39590	COG0492	ferredoxin-NADP+ reductase activity
At1D1108_39620	COG4566	intracellular signal transduction
At1D1108_39640	COG2140	Oxalate decarboxylase
At1D1108_39650	COG0783	Belongs to the Dps family
At1D1108_39670	COG0583	DNA-binding transcription factor activity
At1D1108_39690	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_39700	COG1846	Transcriptional regulator
At1D1108_39730	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
At1D1108_39740	COG0583	DNA-binding transcription factor activity
At1D1108_39750	COG0346	lactoylglutathione lyase activity
At1D1108_39790	COG1574	metal-dependent hydrolase with the TIM-barrel fold
At1D1108_39830	COG2080	2 iron, 2 sulfur cluster binding
At1D1108_39840	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
At1D1108_39850	COG1529	Aldehyde oxidase and xanthine dehydrogenase
At1D1108_39860	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
At1D1108_39870	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
At1D1108_39910	COG1278	Cold shock
At1D1108_39970	COG2986	histidine ammonia-lyase
At1D1108_40010	COG4172	Belongs to the ABC transporter superfamily
At1D1108_40020	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_40030	COG0601	transmembrane transport
At1D1108_40040	COG4166	transmembrane transport
At1D1108_40060	COG0840	transmembrane signaling receptor activity
At1D1108_40080	COG5001	Diguanylate cyclase
At1D1108_40080	COG3300	MHYT domain
At1D1108_40130	COG1609	Transcriptional regulator
At1D1108_40160	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_40170	COG1735	metal-dependent hydrolase with the TIM-barrel fold
At1D1108_40210	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
At1D1108_40220	COG1049	propionate catabolic process, 2-methylcitrate cycle
At1D1108_40240	COG0367	asparagine synthase
At1D1108_40260	COG0318	PFAM AMP-dependent synthetase and ligase
At1D1108_40270	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
At1D1108_40310	COG0404	The glycine cleavage system catalyzes the degradation of glycine
At1D1108_40310	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D1108_40320	COG4311	Sarcosine oxidase, delta subunit
At1D1108_40330	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1108_40340	COG4977	sequence-specific DNA binding
At1D1108_40350	COG1129	ABC transporter
At1D1108_40370	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_40400	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_40410	COG0246	Mannitol dehydrogenase
At1D1108_40420	COG1312	Catalyzes the dehydration of D-mannonate
At1D1108_40460	COG1309	transcriptional regulator
At1D1108_40470	COG1063	alcohol dehydrogenase
At1D1108_40490	COG1879	ABC-type sugar transport system periplasmic component
At1D1108_40510	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_40550	COG0477	Major facilitator Superfamily
At1D1108_40570	COG0483	inositol monophosphate 1-phosphatase activity
At1D1108_40620	COG1178	ABC-type Fe3 transport system permease component
At1D1108_40690	COG1253	flavin adenine dinucleotide binding
At1D1108_40720	COG3842	ATPase activity
At1D1108_40730	COG0395	ABC-type sugar transport system, permease component
At1D1108_40740	COG1175	transmembrane transport
At1D1108_40750	COG1653	transport
At1D1108_40770	COG0673	inositol 2-dehydrogenase activity
At1D1108_40780	COG1609	Transcriptional regulator
At1D1108_40810	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1108_40830	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D1108_40830	COG0404	The glycine cleavage system catalyzes the degradation of glycine
At1D1108_40850	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
At1D1108_40870	COG0668	transmembrane transport
At1D1108_40930	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_40940	COG1535	isochorismatase
At1D1108_40940	COG3433	isochorismatase activity
At1D1108_40950	COG1021	2,3-dihydroxybenzoate-AMP ligase
At1D1108_40960	COG1169	isochorismate synthase
At1D1108_40980	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
At1D1108_40980	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
At1D1108_40990	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
At1D1108_41010	COG2375	cellular response to nickel ion
At1D1108_41030	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1108_41040	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1108_41050	COG1120	ATPase activity
At1D1108_41080	COG1629	transport
At1D1108_41080	COG4774	siderophore transport
At1D1108_41090	COG1960	acyl-CoA dehydrogenase activity
At1D1108_41100	COG0583	DNA-binding transcription factor activity
At1D1108_41110	COG1609	Transcriptional regulator
At1D1108_41130	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1108_41170	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
At1D1108_41190	COG1473	amidohydrolase
At1D1108_41220	COG0747	negative chemotaxis
At1D1108_41230	COG0601	transmembrane transport
At1D1108_41250	COG0444	Belongs to the ABC transporter superfamily
At1D1108_41260	COG4608	Belongs to the ABC transporter superfamily
At1D1108_41270	COG0583	DNA-binding transcription factor activity
At1D1108_41280	COG0747	negative chemotaxis
At1D1108_41300	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_41320	COG0693	protein deglycase activity
At1D1108_41340	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_41350	COG0601	transmembrane transport
At1D1108_41370	COG1473	amidohydrolase
At1D1108_41380	COG4172	Belongs to the ABC transporter superfamily
At1D1108_41390	COG2390	Transcriptional regulator
At1D1108_41410	COG1175	transmembrane transport
At1D1108_41420	COG0395	ABC-type sugar transport system, permease component
At1D1108_41510	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
At1D1108_41530	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
At1D1108_41540	COG1414	Transcriptional regulator
At1D1108_41550	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_41560	COG5487	UPF0391 membrane protein
At1D1108_41570	COG1108	ABC-type Mn2 Zn2 transport systems permease components
At1D1108_41580	COG1108	ABC-type Mn2 Zn2 transport systems permease components
At1D1108_41590	COG1121	(ABC) transporter
At1D1108_41600	COG0803	Belongs to the bacterial solute-binding protein 9 family
At1D1108_41620	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
At1D1108_41630	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
At1D1108_41640	COG0471	metal ion transport
At1D1108_41640	COG3273	potassium ion transport
At1D1108_41650	COG1253	flavin adenine dinucleotide binding
At1D1108_41660	COG1309	transcriptional regulator
At1D1108_41690	COG1609	Transcriptional regulator
At1D1108_41700	COG1070	Carbohydrate kinase
At1D1108_41710	COG2115	Belongs to the xylose isomerase family
At1D1108_41740	COG0778	Nitroreductase
At1D1108_41750	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
At1D1108_41760	COG2011	ABC-type metal ion transport system permease component
At1D1108_41780	COG3300	MHYT domain
At1D1108_41780	COG5001	Diguanylate cyclase
At1D1108_41820	COG0800	Aldolase
At1D1108_41860	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
At1D1108_41930	COG0523	cobalamin synthesis protein
At1D1108_41950	COG1846	Transcriptional regulator
At1D1108_41960	COG1609	Transcriptional regulator
At1D1108_41970	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D1108_41980	COG0673	inositol 2-dehydrogenase activity
At1D1108_41990	COG3718	enzyme involved in inositol metabolism
At1D1108_42010	COG3962	Belongs to the TPP enzyme family
At1D1108_42020	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1108_42040	COG3842	ATPase activity
At1D1108_42080	COG0683	leucine binding
At1D1108_42110	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_42130	COG0747	negative chemotaxis
At1D1108_42140	COG4172	Belongs to the ABC transporter superfamily
At1D1108_42190	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
At1D1108_42200	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
At1D1108_42210	COG1126	abc transporter atp-binding protein
At1D1108_42220	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1108_42230	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1108_42240	COG0765	amino acid transport
At1D1108_42250	COG0765	amino acid transport
At1D1108_42270	COG3485	protocatechuate 3,4-dioxygenase
At1D1108_42280	COG3485	protocatechuate 3,4-dioxygenase
At1D1108_42290	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
At1D1108_42310	COG0583	DNA-binding transcription factor activity
At1D1108_42340	COG1414	Transcriptional regulator
At1D1108_42360	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
At1D1108_42370	COG0183	Belongs to the thiolase family
At1D1108_42380	COG1609	Transcriptional regulator
At1D1108_42400	COG1082	Xylose isomerase domain protein TIM barrel
At1D1108_42410	COG0673	inositol 2-dehydrogenase activity
At1D1108_42430	COG1609	Transcriptional regulator
At1D1108_42440	COG0395	ABC-type sugar transport system, permease component
At1D1108_42450	COG1175	transmembrane transport
At1D1108_42460	COG3842	ATPase activity
At1D1108_42480	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
At1D1108_42540	COG3842	ATPase activity
At1D1108_42550	COG4149	molybdate abc transporter
At1D1108_42570	COG0584	glycerophosphoryl diester phosphodiesterase
At1D1108_42580	COG0483	inositol monophosphate 1-phosphatase activity
At1D1108_42610	COG3842	ATPase activity
At1D1108_42620	COG1177	transmembrane transport
At1D1108_42640	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D1108_42730	COG3210	domain, Protein
At1D1108_42730	COG3210	domain, Protein
At1D1108_42780	COG0443	Heat shock 70 kDa protein
At1D1108_42810	COG0385	Bile acid
At1D1108_42830	COG2942	2-epimerase
At1D1108_42840	COG1132	(ABC) transporter
At1D1108_42860	COG0297	glycogen (starch) synthase activity
At1D1108_42910	COG0438	transferase activity, transferring glycosyl groups
At1D1108_42960	COG2963	transposase activity
At1D1108_42970	COG3436	PFAM IS66 Orf2 family protein
At1D1108_42980	COG4372	Transposase
At1D1108_42990	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
At1D1108_42990	COG0456	acetyltransferase
At1D1108_43000	COG4372	Transposase
At1D1108_43010	COG3436	PFAM IS66 Orf2 family protein
At1D1108_43070	COG0463	Glycosyl transferase, family 2
At1D1108_43110	COG0572	uridine kinase
At1D1108_43150	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
At1D1108_43160	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1108_43170	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1108_43180	COG1120	ATPase activity
At1D1108_43190	COG4774	siderophore transport
At1D1108_43200	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
At1D1108_43230	COG1609	Transcriptional regulator
At1D1108_43240	COG1233	COG1233 Phytoene dehydrogenase and related
At1D1108_43270	COG0395	ABC-type sugar transport system, permease component
At1D1108_43280	COG3842	ATPase activity
At1D1108_43290	COG4608	Belongs to the ABC transporter superfamily
At1D1108_43300	COG0444	Belongs to the ABC transporter superfamily
At1D1108_43310	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_43320	COG0601	transmembrane transport
At1D1108_43330	COG2186	Transcriptional regulator
At1D1108_43350	COG0747	negative chemotaxis
At1D1108_43370	COG5001	Diguanylate cyclase
At1D1108_43370	COG3300	MHYT domain
At1D1108_43380	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_43400	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
At1D1108_43420	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
At1D1108_43430	COG0306	phosphate transporter
At1D1108_43440	COG1392	Phosphate transport regulator
At1D1108_43480	COG0745	RESPONSE REGULATOR receiver
At1D1108_43490	COG5002	protein histidine kinase activity
At1D1108_43520	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
At1D1108_43540	COG2207	Transcriptional regulator
At1D1108_43550	COG4774	siderophore transport
At1D1108_43570	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1108_43580	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1108_43590	COG1120	ATPase activity
At1D1108_43600	COG1733	regulation of RNA biosynthetic process
At1D1108_43650	COG1012	belongs to the aldehyde dehydrogenase family
At1D1108_43660	COG0583	DNA-binding transcription factor activity
At1D1108_43680	COG3119	arylsulfatase activity
At1D1108_43690	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1108_43700	COG3842	ATPase activity
At1D1108_43710	COG0165	Argininosuccinate lyase
At1D1108_43720	COG0395	ABC-type sugar transport system, permease component
At1D1108_43740	COG2182	Extracellular solute-binding protein
At1D1108_43750	COG1940	carbohydrate kinase activity
At1D1108_43800	COG1486	melibiose metabolic process
At1D1108_43810	COG0747	negative chemotaxis
At1D1108_43820	COG0601	transmembrane transport
At1D1108_43830	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_43840	COG4172	Belongs to the ABC transporter superfamily
At1D1108_43850	COG1486	melibiose metabolic process
At1D1108_43880	COG0784	Response regulator, receiver
At1D1108_43890	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
At1D1108_43910	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1108_43920	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
At1D1108_43950	COG0765	amino acid transport
At1D1108_43970	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1108_43990	COG3938	Belongs to the proline racemase family
At1D1108_44030	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1108_44050	COG0765	amino acid transport
At1D1108_44070	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D1108_44100	COG0402	S-adenosylhomocysteine deaminase activity
At1D1108_44130	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_44150	COG0402	S-adenosylhomocysteine deaminase activity
At1D1108_44160	COG0444	Belongs to the ABC transporter superfamily
At1D1108_44170	COG4608	Belongs to the ABC transporter superfamily
At1D1108_44180	COG1802	Transcriptional regulator
At1D1108_44190	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D1108_44240	COG3383	formate dehydrogenase (NAD+) activity
At1D1108_44270	COG0456	acetyltransferase
At1D1108_44290	COG0745	RESPONSE REGULATOR receiver
At1D1108_44330	COG3237	CsbD-like
At1D1108_44340	COG2197	response regulator
At1D1108_44350	COG3181	Tripartite tricarboxylate transporter family receptor
At1D1108_44360	COG5265	(ABC) transporter
At1D1108_44370	COG0640	Transcriptional regulator
At1D1108_44400	COG4943	cyclic-guanylate-specific phosphodiesterase activity
At1D1108_44420	COG0753	catalase activity
At1D1108_44510	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
At1D1108_44550	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
At1D1108_44560	COG4251	negative regulation of phosphorylation
At1D1108_44560	COG5001	Diguanylate cyclase
At1D1108_44560	COG3706	GGDEF domain
At1D1108_44560	COG2203	Gaf domain
At1D1108_44580	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
At1D1108_44590	COG3046	protein related to deoxyribodipyrimidine photolyase
At1D1108_44680	COG1595	DNA-templated transcription, initiation
At1D1108_44700	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_44710	COG1309	transcriptional regulator
At1D1108_44750	COG1126	abc transporter atp-binding protein
At1D1108_44760	COG0765	amino acid transport
At1D1108_44770	COG0765	amino acid transport
At1D1108_44780	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1108_44790	COG3608	succinylglutamate desuccinylase aspartoacylase
At1D1108_44800	COG0006	proline dipeptidase activity
At1D1108_44810	COG2423	ornithine cyclodeaminase activity
At1D1108_44820	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
At1D1108_44830	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D1108_44840	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
At1D1108_44860	COG1522	sequence-specific DNA binding
At1D1108_45070	COG3501	Rhs element vgr protein
At1D1108_45330	COG0406	alpha-ribazole phosphatase activity
At1D1108_45360	COG2161	toxin-antitoxin pair type II binding
At1D1108_45410	COG1192	Involved in chromosome partitioning
At1D1108_45420	COG1475	DNA binding
At1D1108_45430	COG0640	Transcriptional regulator
At1D1108_45460	COG1804	L-carnitine dehydratase bile acid-inducible protein F
At1D1108_45480	COG0583	DNA-binding transcription factor activity
At1D1108_45490	COG0583	DNA-binding transcription factor activity
At1D1108_45530	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_45550	COG0300	oxidoreductase activity
At1D1108_45600	COG3971	2-oxopent-4-enoate hydratase activity
At1D1108_45610	COG3485	protocatechuate 3,4-dioxygenase
At1D1108_45750	COG1396	sequence-specific DNA binding
At1D1108_45770	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
At1D1108_45860	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_45880	COG0477	Major facilitator Superfamily
At1D1108_45910	COG1794	racemase activity, acting on amino acids and derivatives
At1D1108_45930	COG0300	oxidoreductase activity
At1D1108_45960	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
At1D1108_45970	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
At1D1108_45990	COG1605	Chorismate mutase
At1D1108_45990	COG0287	Prephenate dehydrogenase
At1D1108_46000	COG0583	DNA-binding transcription factor activity
At1D1108_46010	COG0300	oxidoreductase activity
At1D1108_46040	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1108_46060	COG0251	oxidation-reduction process
At1D1108_46090	COG4325	translation initiation factor activity
At1D1108_46110	COG3316	Transposase and inactivated derivatives
At1D1108_46140	COG0300	oxidoreductase activity
At1D1108_46170	COG0395	ABC-type sugar transport system, permease component
At1D1108_46220	COG3220	belongs to the UPF0276 family
At1D1108_46240	COG0747	negative chemotaxis
At1D1108_46250	COG0601	transmembrane transport
At1D1108_46260	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_46280	COG4608	Belongs to the ABC transporter superfamily
At1D1108_46320	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
At1D1108_46330	COG0154	amidase activity
At1D1108_46350	COG3620	sequence-specific DNA binding
At1D1108_46360	COG3550	peptidyl-serine autophosphorylation
At1D1108_46370	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
At1D1108_46380	COG3657	addiction module killer protein
At1D1108_46400	COG3609	addiction module antidote protein, CC2985 family
At1D1108_46430	COG2072	flavoprotein involved in K transport
At1D1108_46450	COG2144	transferase activity, transferring acyl groups
At1D1108_46470	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
At1D1108_46510	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D1108_46540	COG1309	transcriptional regulator
At1D1108_46560	COG0028	Belongs to the TPP enzyme family
At1D1108_46600	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
At1D1108_46620	COG0583	DNA-binding transcription factor activity
At1D1108_46640	COG3481	metal-dependent phosphohydrolase, HD sub domain
At1D1108_46660	COG0765	amino acid transport
At1D1108_46670	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1108_46690	COG2084	Dehydrogenase
At1D1108_46710	COG0251	oxidation-reduction process
At1D1108_46720	COG2207	Transcriptional regulator
At1D1108_46730	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_46750	COG2207	Transcriptional regulator
At1D1108_46770	COG0583	DNA-binding transcription factor activity
At1D1108_46780	COG1902	pentaerythritol trinitrate reductase activity
At1D1108_46790	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_46800	COG4221	oxidoreductase activity
At1D1108_46810	COG3316	Transposase and inactivated derivatives
At1D1108_46830	COG0745	RESPONSE REGULATOR receiver
At1D1108_46840	COG0642	Histidine kinase
At1D1108_46900	COG0840	transmembrane signaling receptor activity
At1D1108_46910	COG1733	regulation of RNA biosynthetic process
At1D1108_46930	COG4221	oxidoreductase activity
At1D1108_46940	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_46970	COG1902	pentaerythritol trinitrate reductase activity
At1D1108_46980	COG1609	Transcriptional regulator
At1D1108_47000	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_47030	COG0673	inositol 2-dehydrogenase activity
At1D1108_47080	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
At1D1108_47110	COG1959	2 iron, 2 sulfur cluster binding
At1D1108_47120	COG1309	transcriptional regulator
At1D1108_47130	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_47180	COG0840	transmembrane signaling receptor activity
At1D1108_47220	COG1522	sequence-specific DNA binding
At1D1108_47230	COG0410	ABC transporter
At1D1108_47300	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1108_47310	COG0765	amino acid transport
At1D1108_47340	COG0697	spore germination
At1D1108_47360	COG1802	Transcriptional regulator
At1D1108_47410	COG0587	DNA-directed DNA polymerase activity
At1D1108_47450	COG5489	Protein of unknown function (DUF736)
At1D1108_47470	COG0776	regulation of translation
At1D1108_47480	COG3505	Type IV secretory pathway VirD4
At1D1108_47580	COG1414	Transcriptional regulator
At1D1108_47600	COG1454	alcohol dehydrogenase
At1D1108_47610	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
At1D1108_47660	COG2197	response regulator
At1D1108_47720	COG1063	alcohol dehydrogenase
At1D1108_47740	COG1733	regulation of RNA biosynthetic process
At1D1108_47760	COG0702	epimerase
At1D1108_47840	COG3838	Conjugal transfer protein Trbc
At1D1108_47850	COG3702	type iv secretory pathway
At1D1108_47860	COG3451	type IV secretory pathway VirB4
At1D1108_47890	COG3704	protein secretion by the type IV secretion system
At1D1108_47910	COG3736	Type IV secretory pathway, component VirB8
At1D1108_47920	COG3504	Conjugal transfer protein
At1D1108_47930	COG2948	multi-organism process
At1D1108_47940	COG2948	multi-organism process
At1D1108_47950	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
At1D1108_47970	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
At1D1108_47980	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
At1D1108_48000	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
At1D1108_48040	COG0784	Response regulator, receiver
At1D1108_48040	COG4191	Histidine kinase
At1D1108_48070	COG2072	flavoprotein involved in K transport
At1D1108_48110	COG3842	ATPase activity
At1D1108_48120	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1108_48140	COG2272	Belongs to the type-B carboxylesterase lipase family
At1D1108_48180	COG4691	Plasmid stability protein
At1D1108_48190	COG1487	ribonuclease activity
At1D1108_48200	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1108_48220	COG2186	Transcriptional regulator
At1D1108_48230	COG0747	negative chemotaxis
At1D1108_48240	COG0601	transmembrane transport
At1D1108_48250	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_48260	COG4172	Belongs to the ABC transporter superfamily
At1D1108_48270	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1108_48330	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1108_48340	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
At1D1108_48370	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
At1D1108_48420	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1108_48430	COG3842	ATPase activity
At1D1108_48440	COG0483	inositol monophosphate 1-phosphatase activity
At1D1108_48450	COG0628	permease
At1D1108_48480	COG3734	2-keto-3-deoxy-galactonokinase
At1D1108_48490	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1108_48500	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1108_48520	COG1175	transmembrane transport
At1D1108_48530	COG0395	ABC-type sugar transport system, permease component
At1D1108_48540	COG3842	ATPase activity
At1D1108_48550	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
At1D1108_48560	COG1414	Transcriptional regulator
At1D1108_48570	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_48580	COG2207	Transcriptional regulator
At1D1108_48620	COG1566	PFAM secretion protein HlyD family protein
At1D1108_48640	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1108_48650	COG1120	ATPase activity
At1D1108_48670	COG4774	siderophore transport
At1D1108_48700	COG0583	DNA-binding transcription factor activity
At1D1108_48710	COG0667	Aldo Keto reductase
At1D1108_48720	COG0583	DNA-binding transcription factor activity
At1D1108_48730	COG0604	alcohol dehydrogenase
At1D1108_48740	COG1609	Transcriptional regulator
At1D1108_48750	COG1082	Xylose isomerase domain protein TIM barrel
At1D1108_48760	COG0673	inositol 2-dehydrogenase activity
At1D1108_48770	COG1082	Xylose isomerase domain protein TIM barrel
At1D1108_48790	COG0405	Gamma-glutamyltransferase
At1D1108_48810	COG1120	ATPase activity
At1D1108_48840	COG4774	siderophore transport
At1D1108_48880	COG1215	transferase activity, transferring glycosyl groups
At1D1108_48910	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
At1D1108_48940	COG2390	Transcriptional regulator
At1D1108_48950	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
At1D1108_48960	COG3958	Transketolase
At1D1108_48970	COG3959	Transketolase, thiamine diphosphate binding domain
At1D1108_48980	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_48990	COG1879	ABC-type sugar transport system periplasmic component
At1D1108_49000	COG1129	ABC transporter
At1D1108_49010	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_49020	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
At1D1108_49040	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
At1D1108_49080	COG0477	Major facilitator Superfamily
At1D1108_49120	COG1126	abc transporter atp-binding protein
At1D1108_49130	COG0765	amino acid transport
At1D1108_49140	COG0765	amino acid transport
At1D1108_49150	COG1741	Belongs to the pirin family
At1D1108_49160	COG1335	isochorismatase
At1D1108_49170	COG0583	DNA-binding transcription factor activity
At1D1108_49180	COG1733	regulation of RNA biosynthetic process
At1D1108_49190	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_49190	COG0604	alcohol dehydrogenase
At1D1108_49190	COG3321	synthase
At1D1108_49200	COG0583	DNA-binding transcription factor activity
At1D1108_49240	COG1017	nitric oxide dioxygenase activity
At1D1108_49240	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
At1D1108_49250	COG0625	glutathione transferase activity
At1D1108_49270	COG0583	DNA-binding transcription factor activity
At1D1108_49320	COG1349	DNA-binding transcription factor activity
At1D1108_49330	COG1879	ABC-type sugar transport system periplasmic component
At1D1108_49340	COG1129	ABC transporter
At1D1108_49350	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_49360	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_49400	COG1012	belongs to the aldehyde dehydrogenase family
At1D1108_49410	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
At1D1108_49430	COG0411	ABC transporter
At1D1108_49490	COG4302	ethanolamine ammonia-lyase activity
At1D1108_49500	COG4303	Ethanolamine ammonia lyase large subunit
At1D1108_49540	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
At1D1108_49550	COG1349	DNA-binding transcription factor activity
At1D1108_49560	COG4608	Belongs to the ABC transporter superfamily
At1D1108_49580	COG0601	transmembrane transport
At1D1108_49590	COG0747	negative chemotaxis
At1D1108_49610	COG3842	ATPase activity
At1D1108_49620	COG1063	alcohol dehydrogenase
At1D1108_49630	COG0395	ABC-type sugar transport system, permease component
At1D1108_49640	COG1175	transmembrane transport
At1D1108_49650	COG1653	transport
At1D1108_49720	COG0326	Molecular chaperone. Has ATPase activity
At1D1108_49740	COG1881	PFAM PEBP family protein
At1D1108_49860	COG0778	Nitroreductase
At1D1108_49870	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
At1D1108_49900	COG0559	Belongs to the binding-protein-dependent transport system permease family
At1D1108_49920	COG0410	ABC transporter
At1D1108_49950	COG0583	DNA-binding transcription factor activity
At1D1108_49960	COG0667	Aldo Keto reductase
At1D1108_50000	COG0410	ABC transporter
At1D1108_50020	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_50080	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_50120	COG1278	Cold shock
At1D1108_50150	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
At1D1108_50160	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1108_50190	COG1538	Outer membrane efflux protein
At1D1108_50200	COG1280	lysine exporter protein (LysE YggA)
At1D1108_50230	COG1126	abc transporter atp-binding protein
At1D1108_50240	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1108_50260	COG1192	Involved in chromosome partitioning
At1D1108_50270	COG1475	DNA binding
At1D1108_50280	COG0640	Transcriptional regulator
At1D1108_50310	COG1787	Restriction endonuclease
At1D1108_50310	COG1715	Restriction endonuclease
At1D1108_50380	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
At1D1108_50470	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D1108_50480	COG0583	DNA-binding transcription factor activity
At1D1108_50490	COG0477	Major facilitator Superfamily
At1D1108_50500	COG3959	Transketolase, thiamine diphosphate binding domain
At1D1108_50510	COG3958	Transketolase
At1D1108_50530	COG1063	alcohol dehydrogenase
At1D1108_50540	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
At1D1108_50560	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_50590	COG1802	Transcriptional regulator
At1D1108_50610	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1108_50640	COG1414	Transcriptional regulator
At1D1108_50650	COG3316	Transposase and inactivated derivatives
At1D1108_50700	COG0667	Aldo Keto reductase
At1D1108_50750	COG2207	Transcriptional regulator
At1D1108_50810	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_50820	COG0024	Methionine aminopeptidase
At1D1108_50830	COG1733	regulation of RNA biosynthetic process
At1D1108_50900	COG1309	transcriptional regulator
At1D1108_50940	COG1175	transmembrane transport
At1D1108_50950	COG0395	ABC-type sugar transport system, permease component
At1D1108_50960	COG3842	ATPase activity
At1D1108_50980	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1108_50990	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_51000	COG1063	alcohol dehydrogenase
At1D1108_51010	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_51020	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1108_51050	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1108_51060	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1108_51090	COG1312	Catalyzes the dehydration of D-mannonate
At1D1108_51120	COG2271	Major facilitator Superfamily
At1D1108_51140	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
At1D1108_51150	COG1414	Transcriptional regulator
At1D1108_51200	COG0583	DNA-binding transcription factor activity
At1D1108_51220	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D1108_51240	COG1129	ABC transporter
At1D1108_51250	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1108_51260	COG1879	ABC-type sugar transport system periplasmic component
At1D1108_51270	COG1082	Xylose isomerase domain protein TIM barrel
At1D1108_51280	COG0673	inositol 2-dehydrogenase activity
At1D1108_51290	COG1082	Xylose isomerase domain protein TIM barrel
At1D1108_51300	COG0673	inositol 2-dehydrogenase activity
At1D1108_51320	COG3962	Belongs to the TPP enzyme family
At1D1108_51330	COG3718	enzyme involved in inositol metabolism
At1D1108_51340	COG1942	4-Oxalocrotonate Tautomerase
At1D1108_51370	COG0765	amino acid transport
At1D1108_51380	COG1126	abc transporter atp-binding protein
At1D1108_51390	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1108_51410	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1108_51420	COG1073	alpha beta
At1D1108_51430	COG1414	Transcriptional regulator
At1D1108_51440	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
At1D1108_51470	COG1012	belongs to the aldehyde dehydrogenase family
At1D1108_51490	COG0765	amino acid transport
At1D1108_51500	COG0765	amino acid transport
At1D1108_51510	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1108_51520	COG1126	abc transporter atp-binding protein
At1D1108_51540	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1108_51620	COG1475	DNA binding
At1D1108_51680	COG5489	Protein of unknown function (DUF736)
At1D1108_51700	COG1733	regulation of RNA biosynthetic process
At1D1108_51790	COG3505	Type IV secretory pathway VirD4
At1D1108_51820	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
At1D1108_51830	COG4959	Type IV secretory pathway protease TraF
At1D1108_51840	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
At1D1108_51930	COG3504	Conjugal transfer protein
At1D1108_51940	COG3701	Conjugal transfer protein
At1D1108_51950	COG3846	protein secretion by the type IV secretion system
At1D1108_51970	COG5314	conjugation
At1D1108_51980	COG3451	type IV secretory pathway VirB4
At1D1108_52000	COG3838	Conjugal transfer protein Trbc
At1D1108_52010	COG4962	Type ii secretion system protein e
At1D1108_52020	COG1192	Involved in chromosome partitioning
At1D1108_52030	COG1475	DNA binding
At1D1108_52040	COG0640	Transcriptional regulator
At1D1108_52050	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
At1D1108_52090	COG2211	Major facilitator Superfamily
At1D1108_52180	COG4974	Belongs to the 'phage' integrase family
At1D1108_52190	COG1051	belongs to the nudix hydrolase family
At1D1108_52280	COG1475	DNA binding
At1D1108_52330	COG2824	Alkylphosphonate utilization operon protein PhnA
At1D1108_52370	COG1280	lysine exporter protein (LysE YggA)
At1D1108_52460	COG0494	nUDIX hydrolase
At1D1108_52490	COG5489	Protein of unknown function (DUF736)
At1D1108_52680	COG1283	sodium-dependent phosphate transmembrane transporter activity
At1D1108_52700	COG0747	negative chemotaxis
At1D1108_52730	COG0601	transmembrane transport
At1D1108_52740	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1108_52750	COG0584	glycerophosphoryl diester phosphodiesterase
At1D1108_52760	COG0483	inositol monophosphate 1-phosphatase activity
At1D1108_52790	COG4584	PFAM Integrase catalytic
At1D1108_52830	COG3547	Transposase (IS116 IS110 IS902 family)
At1D1108_52890	COG3161	chorismate lyase activity
At1D1108_53400	COG0583	DNA-binding transcription factor activity
At1D1108_53410	COG0747	negative chemotaxis
At1D1108_53440	COG0252	asparaginase activity
At1D1108_53450	COG0583	DNA-binding transcription factor activity
At1D1108_53470	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1108_53540	COG3701	Conjugal transfer protein
At1D1108_53550	COG3846	protein secretion by the type IV secretion system
At1D1108_53570	COG5314	conjugation
At1D1108_53580	COG3451	type IV secretory pathway VirB4
At1D1108_53610	COG4962	Type ii secretion system protein e