locus-tag	class	description
At1D1609_00010	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
At1D1609_00020	COG0424	maF-like protein
At1D1609_00030	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
At1D1609_00040	COG0237	dephospho-CoA kinase activity
At1D1609_00050	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
At1D1609_00060	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
At1D1609_00070	COG3030	protein affecting phage T7 exclusion by the F plasmid
At1D1609_00090	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
At1D1609_00120	COG0187	DNA topoisomerase II activity
At1D1609_00140	COG0179	Fumarylacetoacetate (FAA) hydrolase
At1D1609_00170	COG0135	phosphoribosylanthranilate isomerase activity
At1D1609_00180	COG0133	tryptophan synthase activity
At1D1609_00190	COG0159	tryptophan synthase activity
At1D1609_00200	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
At1D1609_00230	COG1074	ATP-dependent DNA helicase activity
At1D1609_00250	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
At1D1609_00270	COG2205	protein histidine kinase activity
At1D1609_00280	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
At1D1609_00290	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
At1D1609_00300	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
At1D1609_00300	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
At1D1609_00310	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
At1D1609_00320	COG0642	Histidine kinase
At1D1609_00330	COG0745	RESPONSE REGULATOR receiver
At1D1609_00340	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
At1D1609_00360	COG1072	(Pantothenic acid kinase))
At1D1609_00370	COG0140	phosphoribosyl-ATP diphosphatase activity
At1D1609_00380	COG0107	imidazoleglycerol-phosphate synthase activity
At1D1609_00390	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
At1D1609_00400	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
At1D1609_00420	COG0131	Imidazoleglycerol-phosphate dehydratase
At1D1609_00430	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
At1D1609_00440	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
At1D1609_00460	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
At1D1609_00490	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
At1D1609_00510	COG1643	Atp-dependent helicase
At1D1609_00520	COG0514	ATP-dependent DNA helicase (RecQ)
At1D1609_00570	COG1072	(Pantothenic acid kinase))
At1D1609_00590	COG1780	Probably involved in ribonucleotide reductase function
At1D1609_00630	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
At1D1609_00680	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_00700	COG2813	Specifically methylates the guanine in position
At1D1609_00710	COG1185	polyribonucleotide nucleotidyltransferase activity
At1D1609_00720	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
At1D1609_00730	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
At1D1609_00740	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
At1D1609_00750	COG3064	Membrane
At1D1609_00750	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
At1D1609_00780	COG0779	Required for maturation of 30S ribosomal subunits
At1D1609_00790	COG2814	Major facilitator Superfamily
At1D1609_00800	COG3385	transposase activity
At1D1609_00810	COG2951	lytic endotransglycosylase activity
At1D1609_00820	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
At1D1609_00840	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
At1D1609_00850	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
At1D1609_00870	COG2816	NAD+ diphosphatase activity
At1D1609_00880	COG1605	Chorismate mutase
At1D1609_00880	COG0077	Prephenate dehydratase
At1D1609_00890	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
At1D1609_00900	COG3474	cytochrome
At1D1609_00920	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
At1D1609_00930	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
At1D1609_00940	COG1278	Cold shock
At1D1609_00950	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
At1D1609_00970	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
At1D1609_00970	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
At1D1609_00980	COG0333	Belongs to the bacterial ribosomal protein bL32 family
At1D1609_01040	COG2900	Belongs to the SlyX family
At1D1609_01060	COG0484	heat shock protein binding
At1D1609_01070	COG0443	Heat shock 70 kDa protein
At1D1609_01090	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
At1D1609_01140	COG0295	cytidine deaminase activity
At1D1609_01150	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
At1D1609_01160	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
At1D1609_01170	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
At1D1609_01190	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
At1D1609_01200	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
At1D1609_01210	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
At1D1609_01230	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
At1D1609_01240	COG1845	cytochrome c oxidase, subunit III
At1D1609_01250	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
At1D1609_01270	COG0477	Major facilitator Superfamily
At1D1609_01280	COG0070	glutamate synthase
At1D1609_01280	COG0067	glutamate synthase
At1D1609_01280	COG0069	glutamate synthase activity
At1D1609_01290	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
At1D1609_01320	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
At1D1609_01340	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
At1D1609_01400	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_01440	COG0848	biopolymer transport protein
At1D1609_01460	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
At1D1609_01490	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
At1D1609_01500	COG3454	Phosphonate metabolism
At1D1609_01510	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
At1D1609_01520	COG3639	organic phosphonate transmembrane transporter activity
At1D1609_01530	COG3639	organic phosphonate transmembrane transporter activity
At1D1609_01540	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
At1D1609_01550	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
At1D1609_01570	COG4778	phosphonate C-P lyase system protein PhnL
At1D1609_01580	COG4107	phosphonate C-P lyase system protein PhnK
At1D1609_01590	COG3627	carbon phosphorus lyase activity
At1D1609_01610	COG3626	phosphonate metabolism
At1D1609_01620	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
At1D1609_01630	COG3624	Phosphonate C-P lyase system protein PhnG
At1D1609_01640	COG2188	Transcriptional regulator
At1D1609_01650	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
At1D1609_01660	COG0837	glucose binding
At1D1609_01670	COG1803	Methylglyoxal synthase
At1D1609_01680	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
At1D1609_01690	COG4166	transmembrane transport
At1D1609_01700	COG4174	ABC transporter (Permease)
At1D1609_01710	COG4239	(ABC) transporter, permease
At1D1609_01720	COG4172	Belongs to the ABC transporter superfamily
At1D1609_01730	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_01740	COG0174	glutamine synthetase
At1D1609_01750	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_01760	COG3265	gluconokinase activity
At1D1609_01770	COG1174	glycine betaine transport
At1D1609_01780	COG1125	glycine betaine transport
At1D1609_01790	COG1174	glycine betaine transport
At1D1609_01800	COG1732	Glycine betaine
At1D1609_01820	COG1959	2 iron, 2 sulfur cluster binding
At1D1609_01830	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D1609_01860	COG0697	spore germination
At1D1609_01890	COG0791	NLP P60 protein
At1D1609_01910	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
At1D1609_01920	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
At1D1609_01990	COG4964	Belongs to the GSP D family
At1D1609_02070	COG3422	double-strand break repair
At1D1609_02080	COG3757	hydrolase, family 25
At1D1609_02090	COG0697	spore germination
At1D1609_02100	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D1609_02160	COG0481	GTPase activity
At1D1609_02170	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
At1D1609_02200	COG1396	sequence-specific DNA binding
At1D1609_02230	COG1917	Cupin 2, conserved barrel domain protein
At1D1609_02230	COG2169	Transcriptional regulator
At1D1609_02240	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
At1D1609_02290	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
At1D1609_02300	COG0291	Belongs to the bacterial ribosomal protein bL35 family
At1D1609_02310	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
At1D1609_02330	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
At1D1609_02340	COG0072	phenylalanine-tRNA ligase activity
At1D1609_02340	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
At1D1609_02350	COG0667	Aldo Keto reductase
At1D1609_02390	COG4977	sequence-specific DNA binding
At1D1609_02440	COG1570	exodeoxyribonuclease VII activity
At1D1609_02450	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1609_02470	COG1846	Transcriptional regulator
At1D1609_02480	COG0697	spore germination
At1D1609_02490	COG2309	aminopeptidase activity
At1D1609_02510	COG1393	Belongs to the ArsC family
At1D1609_02540	COG1309	transcriptional regulator
At1D1609_02600	COG1902	pentaerythritol trinitrate reductase activity
At1D1609_02620	COG0604	alcohol dehydrogenase
At1D1609_02640	COG0084	hydrolase, TatD family'
At1D1609_02680	COG1074	ATP-dependent DNA helicase activity
At1D1609_02870	COG5489	Protein of unknown function (DUF736)
At1D1609_02930	COG1192	Involved in chromosome partitioning
At1D1609_03020	COG4962	Type ii secretion system protein e
At1D1609_03050	COG3451	type IV secretory pathway VirB4
At1D1609_03080	COG3846	protein secretion by the type IV secretion system
At1D1609_03110	COG2948	multi-organism process
At1D1609_03130	COG2207	Transcriptional regulator
At1D1609_03150	COG1335	isochorismatase
At1D1609_03220	COG0518	GMP synthase (glutamine-hydrolyzing) activity
At1D1609_03220	COG0519	Catalyzes the synthesis of GMP from XMP
At1D1609_03250	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
At1D1609_03310	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
At1D1609_03330	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
At1D1609_03350	COG1968	undecaprenyl-diphosphatase activity
At1D1609_03380	COG0284	orotidine-5'-phosphate decarboxylase activity
At1D1609_03400	COG3963	phosphatidate phosphatase activity
At1D1609_03410	COG0592	DNA-directed DNA polymerase activity
At1D1609_03420	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
At1D1609_03460	COG1175	transmembrane transport
At1D1609_03470	COG0395	ABC-type sugar transport system, permease component
At1D1609_03480	COG3842	ATPase activity
At1D1609_03500	COG0189	ligase activity
At1D1609_03510	COG0606	chelatase, subunit chli
At1D1609_03520	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
At1D1609_03530	COG1280	lysine exporter protein (LysE YggA)
At1D1609_03540	COG0756	dUTP diphosphatase activity
At1D1609_03550	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
At1D1609_03560	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
At1D1609_03590	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
At1D1609_03600	COG2226	methyltransferase
At1D1609_03610	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
At1D1609_03620	COG1024	Enoyl-CoA hydratase
At1D1609_03630	COG0268	Binds directly to 16S ribosomal RNA
At1D1609_03640	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
At1D1609_03650	COG0635	Involved in the biosynthesis of porphyrin-containing compound
At1D1609_03660	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
At1D1609_03670	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
At1D1609_03680	COG1420	regulation of RNA biosynthetic process
At1D1609_03690	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
At1D1609_03700	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
At1D1609_03710	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
At1D1609_03730	COG1137	ATPase activity
At1D1609_03740	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
At1D1609_03760	COG0616	signal peptide processing
At1D1609_03770	COG0776	regulation of translation
At1D1609_03800	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
At1D1609_03810	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
At1D1609_03840	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
At1D1609_03850	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
At1D1609_03860	COG0728	peptidoglycan biosynthetic process
At1D1609_03880	COG0180	Tryptophanyl-tRNA synthetase
At1D1609_03900	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
At1D1609_03910	COG1214	PFAM Peptidase M22, glycoprotease
At1D1609_03920	COG0456	acetyltransferase
At1D1609_03950	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
At1D1609_03960	COG1702	phosphate starvation-inducible protein PhoH
At1D1609_03970	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
At1D1609_03990	COG0815	Transfers the fatty acyl group on membrane lipoproteins
At1D1609_04000	COG1396	sequence-specific DNA binding
At1D1609_04010	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
At1D1609_04020	COG0220	tRNA (guanine-N7-)-methyltransferase activity
At1D1609_04030	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_04050	COG0242	peptide deformylase activity
At1D1609_04060	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
At1D1609_04070	COG0101	tRNA pseudouridine synthase activity
At1D1609_04090	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
At1D1609_04100	COG2171	N-acyltransferase activity
At1D1609_04130	COG0840	transmembrane signaling receptor activity
At1D1609_04140	COG1957	nucleoside hydrolase
At1D1609_04150	COG0071	Belongs to the small heat shock protein (HSP20) family
At1D1609_04200	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
At1D1609_04220	COG0218	Necessary for normal cell division and for the maintenance of normal septation
At1D1609_04230	COG0706	membrane insertase activity
At1D1609_04240	COG0594	ribonuclease P activity
At1D1609_04250	COG0840	transmembrane signaling receptor activity
At1D1609_04270	COG2226	methyltransferase
At1D1609_04280	COG3842	ATPase activity
At1D1609_04290	COG1175	transmembrane transport
At1D1609_04300	COG0395	ABC-type sugar transport system, permease component
At1D1609_04330	COG0427	acetyl-CoA hydrolase
At1D1609_04350	COG3938	Belongs to the proline racemase family
At1D1609_04360	COG0418	dihydroorotase activity
At1D1609_04370	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
At1D1609_04410	COG0166	Belongs to the GPI family
At1D1609_04420	COG0318	PFAM AMP-dependent synthetase and ligase
At1D1609_04430	COG3842	ATPase activity
At1D1609_04440	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D1609_04450	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
At1D1609_04470	COG4774	siderophore transport
At1D1609_04570	COG2326	polyphosphate kinase activity
At1D1609_04580	COG5002	protein histidine kinase activity
At1D1609_04590	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
At1D1609_04600	COG0573	inorganic phosphate transmembrane transporter activity
At1D1609_04620	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
At1D1609_04630	COG0704	Plays a role in the regulation of phosphate uptake
At1D1609_04640	COG0745	RESPONSE REGULATOR receiver
At1D1609_04670	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
At1D1609_04680	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
At1D1609_04690	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
At1D1609_04700	COG2967	ApaG domain
At1D1609_04720	COG0717	Belongs to the dCTP deaminase family
At1D1609_04730	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
At1D1609_04830	COG0167	dihydroorotate dehydrogenase activity
At1D1609_04860	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
At1D1609_04900	COG1959	2 iron, 2 sulfur cluster binding
At1D1609_04910	COG1201	RNA secondary structure unwinding
At1D1609_04970	COG1960	acyl-CoA dehydrogenase activity
At1D1609_04980	COG0183	Belongs to the thiolase family
At1D1609_05000	COG1250	3-hydroxyacyl-CoA dehydrogenase
At1D1609_05000	COG1024	Enoyl-CoA hydratase
At1D1609_05060	COG1320	monovalent cation:proton antiporter activity
At1D1609_05070	COG2212	antiporter activity
At1D1609_05080	COG1863	multisubunit Na H antiporter MnhE subunit
At1D1609_05090	COG0651	ATP synthesis coupled electron transport
At1D1609_05100	COG1006	Multisubunit Na H antiporter MnhC subunit
At1D1609_05110	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
At1D1609_05110	COG2111	Na H antiporter
At1D1609_05130	COG0840	transmembrane signaling receptor activity
At1D1609_05160	COG0643	Histidine kinase
At1D1609_05160	COG2198	Histidine kinase
At1D1609_05170	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
At1D1609_05180	COG2201	protein-glutamate methylesterase activity
At1D1609_05190	COG0745	RESPONSE REGULATOR receiver
At1D1609_05200	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
At1D1609_05220	COG1766	The M ring may be actively involved in energy transduction
At1D1609_05230	COG2771	luxR family
At1D1609_05250	COG0840	transmembrane signaling receptor activity
At1D1609_05250	COG2972	Histidine kinase
At1D1609_05260	COG2205	protein histidine kinase activity
At1D1609_05260	COG2198	Histidine kinase
At1D1609_05260	COG0784	Response regulator, receiver
At1D1609_05270	COG1970	mechanosensitive ion channel activity
At1D1609_05280	COG0436	Aminotransferase
At1D1609_05310	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
At1D1609_05320	COG0424	maF-like protein
At1D1609_05330	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
At1D1609_05350	COG5328	Belongs to the UPF0262 family
At1D1609_05360	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
At1D1609_05380	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
At1D1609_05730	COG0328	RNA-DNA hybrid ribonuclease activity
At1D1609_05760	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
At1D1609_05930	COG0582	viral genome integration into host DNA
At1D1609_05970	COG1338	Plays a role in the flagellum-specific transport system
At1D1609_05990	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
At1D1609_06010	COG1706	bacterial-type flagellum-dependent cell motility
At1D1609_06020	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
At1D1609_06030	COG4786	Flagellar basal body rod
At1D1609_06040	COG1677	Flagellar hook-basal body complex protein FliE
At1D1609_06050	COG1558	bacterial-type flagellum-dependent cell motility
At1D1609_06060	COG1815	bacterial-type flagellum-dependent cell motility
At1D1609_06080	COG1157	protein secretion by the type III secretion system
At1D1609_06090	COG4786	Flagellar basal body rod
At1D1609_06110	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
At1D1609_06120	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
At1D1609_06130	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
At1D1609_06140	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
At1D1609_06150	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
At1D1609_06190	COG1360	Flagellar Motor Protein
At1D1609_06240	COG1749	Flagellar hook protein flgE
At1D1609_06250	COG1256	bacterial-type flagellum assembly
At1D1609_06250	COG4786	Flagellar basal body rod
At1D1609_06280	COG5443	negative regulation of bacterial-type flagellum assembly
At1D1609_06290	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
At1D1609_06310	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
At1D1609_06390	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
At1D1609_06400	COG1609	Transcriptional regulator
At1D1609_06410	COG1653	transport
At1D1609_06420	COG1175	transmembrane transport
At1D1609_06430	COG0395	ABC-type sugar transport system, permease component
At1D1609_06440	COG0366	Alpha amylase catalytic
At1D1609_06450	COG3842	ATPase activity
At1D1609_06470	COG3609	addiction module antidote protein, CC2985 family
At1D1609_06500	COG0129	dihydroxy-acid dehydratase activity
At1D1609_06510	COG0363	glucosamine-6-phosphate deaminase activity
At1D1609_06520	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
At1D1609_06530	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_06550	COG2081	HI0933 family
At1D1609_06590	COG2224	Isocitrate lyase
At1D1609_06610	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
At1D1609_06620	COG3842	ATPase activity
At1D1609_06630	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1609_06640	COG1177	transmembrane transport
At1D1609_06660	COG2205	protein histidine kinase activity
At1D1609_06670	COG0248	Ppx GppA phosphatase
At1D1609_06680	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
At1D1609_06690	COG0477	Major facilitator Superfamily
At1D1609_06750	COG0521	Mo-molybdopterin cofactor biosynthetic process
At1D1609_06760	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
At1D1609_06780	COG0142	geranyltranstransferase activity
At1D1609_06850	COG0752	glycyl-tRNA synthetase alpha subunit
At1D1609_06860	COG1704	LemA family
At1D1609_06870	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
At1D1609_06890	COG0751	glycine-tRNA ligase activity
At1D1609_06900	COG1683	Conserved Protein
At1D1609_06920	COG0840	transmembrane signaling receptor activity
At1D1609_06940	COG0151	Belongs to the GarS family
At1D1609_06950	COG2183	response to ionizing radiation
At1D1609_06960	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
At1D1609_06980	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
At1D1609_07010	COG0583	DNA-binding transcription factor activity
At1D1609_07050	COG0306	phosphate transporter
At1D1609_07070	COG0561	phosphatase activity
At1D1609_07080	COG0438	transferase activity, transferring glycosyl groups
At1D1609_07090	COG2186	Transcriptional regulator
At1D1609_07110	COG0583	DNA-binding transcription factor activity
At1D1609_07120	COG0277	FAD linked oxidase domain protein
At1D1609_07140	COG0277	FAD linked oxidase domain protein
At1D1609_07150	COG0247	lactate metabolic process
At1D1609_07170	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1609_07180	COG2818	Glycosylase
At1D1609_07200	COG2855	membrane
At1D1609_07210	COG0583	DNA-binding transcription factor activity
At1D1609_07270	COG0124	histidyl-tRNA synthetase
At1D1609_07280	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
At1D1609_07290	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
At1D1609_07300	COG2259	Doxx family
At1D1609_07320	COG0459	protein refolding
At1D1609_07330	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
At1D1609_07350	COG0196	riboflavin kinase activity
At1D1609_07360	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
At1D1609_07380	COG0590	tRNA wobble adenosine to inosine editing
At1D1609_07390	COG1187	pseudouridine synthase activity
At1D1609_07400	COG0742	ribosomal rna small subunit methyltransferase
At1D1609_07410	COG1752	Esterase of the alpha-beta hydrolase superfamily
At1D1609_07420	COG0475	glutathione-regulated potassium exporter activity
At1D1609_07420	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
At1D1609_07430	COG0312	modulator of DNA gyrase
At1D1609_07440	COG0483	inositol monophosphate 1-phosphatase activity
At1D1609_07460	COG1519	Transferase
At1D1609_07480	COG1663	tetraacyldisaccharide 4'-kinase activity
At1D1609_07500	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
At1D1609_07510	COG0745	RESPONSE REGULATOR receiver
At1D1609_07520	COG3300	MHYT domain
At1D1609_07520	COG5001	Diguanylate cyclase
At1D1609_07530	COG3386	PFAM SMP-30 Gluconolaconase
At1D1609_07540	COG0800	Aldolase
At1D1609_07550	COG3734	2-keto-3-deoxy-galactonokinase
At1D1609_07560	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_07570	COG1414	Transcriptional regulator
At1D1609_07580	COG2197	response regulator
At1D1609_07610	COG0598	Magnesium transport protein CorA
At1D1609_07620	COG3158	transport of potassium into the cell
At1D1609_07650	COG0356	it plays a direct role in the translocation of protons across the membrane
At1D1609_07670	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
At1D1609_07680	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
At1D1609_07700	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
At1D1609_07740	COG0009	L-threonylcarbamoyladenylate synthase
At1D1609_07760	COG4638	Rieske (2fe-2S)
At1D1609_07810	COG1960	acyl-CoA dehydrogenase activity
At1D1609_07840	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
At1D1609_07860	COG0840	transmembrane signaling receptor activity
At1D1609_07880	COG1522	sequence-specific DNA binding
At1D1609_07940	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
At1D1609_07950	COG1741	Belongs to the pirin family
At1D1609_07960	COG1722	exodeoxyribonuclease VII activity
At1D1609_07970	COG0123	including yeast histone deacetylase and acetoin utilization protein
At1D1609_07980	COG1268	BioY protein
At1D1609_07990	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
At1D1609_08000	COG1122	ATPase activity
At1D1609_08010	COG3214	Protein conserved in bacteria
At1D1609_08040	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
At1D1609_08070	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
At1D1609_08100	COG0259	pyridoxamine-phosphate oxidase activity
At1D1609_08150	COG0312	modulator of DNA gyrase
At1D1609_08180	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
At1D1609_08190	COG0109	protoheme IX farnesyltransferase activity
At1D1609_08210	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
At1D1609_08240	COG3346	SURF1 family
At1D1609_08250	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
At1D1609_08260	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
At1D1609_08270	COG0328	RNA-DNA hybrid ribonuclease activity
At1D1609_08290	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
At1D1609_08290	COG0678	peroxiredoxin activity
At1D1609_08310	COG1678	Uncharacterized ACR, COG1678
At1D1609_08340	COG5001	Diguanylate cyclase
At1D1609_08340	COG3300	MHYT domain
At1D1609_08350	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
At1D1609_08360	COG0612	Peptidase, M16
At1D1609_08400	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
At1D1609_08410	COG1802	Transcriptional regulator
At1D1609_08440	COG2189	Belongs to the N(4) N(6)-methyltransferase family
At1D1609_08460	COG1194	a g-specific adenine glycosylase
At1D1609_08490	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
At1D1609_08500	COG1196	nuclear chromosome segregation
At1D1609_08510	COG2514	catechol 2,3-dioxygenase activity
At1D1609_08520	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
At1D1609_08520	COG0574	Belongs to the PEP-utilizing enzyme family
At1D1609_08600	COG0579	oxidoreductase
At1D1609_08620	COG2895	sulfate adenylyltransferase (ATP) activity
At1D1609_08630	COG0175	sulfate reduction
At1D1609_08640	COG0175	sulfate reduction
At1D1609_08650	COG1959	2 iron, 2 sulfur cluster binding
At1D1609_08660	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
At1D1609_08670	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
At1D1609_08680	COG4208	sulfate ABC transporter
At1D1609_08690	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
At1D1609_08730	COG2199	diguanylate cyclase activity
At1D1609_08730	COG2203	Gaf domain
At1D1609_08730	COG2200	EAL domain
At1D1609_08750	COG1309	transcriptional regulator
At1D1609_08760	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_08770	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
At1D1609_08860	COG0477	Major facilitator Superfamily
At1D1609_08880	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
At1D1609_08880	COG1793	dna ligase
At1D1609_08920	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1609_08930	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1609_08940	COG1846	Transcriptional regulator
At1D1609_08950	COG1764	response to oxidative stress
At1D1609_08980	COG0488	(ABC) transporter
At1D1609_09050	COG4221	oxidoreductase activity
At1D1609_09070	COG0433	COG0433 Predicted ATPase
At1D1609_09090	COG1733	regulation of RNA biosynthetic process
At1D1609_09100	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_09140	COG0656	L-ascorbic acid biosynthetic process
At1D1609_09150	COG2378	regulation of single-species biofilm formation
At1D1609_09170	COG4106	trans-aconitate 2-methyltransferase activity
At1D1609_09180	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
At1D1609_09190	COG0840	transmembrane signaling receptor activity
At1D1609_09200	COG0583	DNA-binding transcription factor activity
At1D1609_09230	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
At1D1609_09270	COG3909	cytochrome
At1D1609_09280	COG2010	Cytochrome c
At1D1609_09340	COG0789	Transcriptional regulator
At1D1609_09390	COG0517	IMP dehydrogenase activity
At1D1609_09390	COG4175	Glycine betaine
At1D1609_09400	COG4176	ABC-type proline glycine betaine transport system permease component
At1D1609_09450	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_09470	COG2169	Transcriptional regulator
At1D1609_09470	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
At1D1609_09490	COG2514	catechol 2,3-dioxygenase activity
At1D1609_09520	COG1272	protein, Hemolysin III
At1D1609_09540	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
At1D1609_09560	COG2111	Na H antiporter
At1D1609_09570	COG1006	Multisubunit Na H antiporter MnhC subunit
At1D1609_09600	COG2212	antiporter activity
At1D1609_09610	COG1320	monovalent cation:proton antiporter activity
At1D1609_09620	COG4957	zinc ion binding
At1D1609_09650	COG2166	iron-sulfur cluster assembly
At1D1609_09670	COG2205	protein histidine kinase activity
At1D1609_09740	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
At1D1609_09770	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
At1D1609_09780	COG2983	Belongs to the UPF0260 family
At1D1609_09860	COG2814	Major facilitator Superfamily
At1D1609_09890	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
At1D1609_10000	COG4695	Portal protein
At1D1609_10200	COG0745	RESPONSE REGULATOR receiver
At1D1609_10210	COG2205	protein histidine kinase activity
At1D1609_10230	COG4235	cytochrome complex assembly
At1D1609_10240	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
At1D1609_10250	COG1138	Cytochrome C-type biogenesis protein
At1D1609_10260	COG3088	subunit of a heme lyase
At1D1609_10270	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
At1D1609_10280	COG0745	RESPONSE REGULATOR receiver
At1D1609_10290	COG2205	protein histidine kinase activity
At1D1609_10300	COG3011	Protein conserved in bacteria
At1D1609_10330	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
At1D1609_10340	COG2202	Pas domain
At1D1609_10340	COG2205	protein histidine kinase activity
At1D1609_10360	COG0308	aminopeptidase N
At1D1609_10370	COG0697	spore germination
At1D1609_10400	COG0443	Heat shock 70 kDa protein
At1D1609_10420	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_10480	COG0604	alcohol dehydrogenase
At1D1609_10490	COG1733	regulation of RNA biosynthetic process
At1D1609_10500	COG1968	undecaprenyl-diphosphatase activity
At1D1609_10510	COG2239	Acts as a magnesium transporter
At1D1609_10520	COG2814	Major facilitator Superfamily
At1D1609_10580	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
At1D1609_10640	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
At1D1609_10720	COG0741	lytic transglycosylase activity
At1D1609_10730	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_10740	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
At1D1609_10750	COG0840	transmembrane signaling receptor activity
At1D1609_10770	COG1758	RNA polymerase activity
At1D1609_10810	COG0736	holo-[acyl-carrier-protein] synthase activity
At1D1609_10820	COG0681	Belongs to the peptidase S26 family
At1D1609_10830	COG0571	ribonuclease III activity
At1D1609_10840	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
At1D1609_10850	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
At1D1609_10860	COG0784	Response regulator, receiver
At1D1609_10870	COG1381	Involved in DNA repair and RecF pathway recombination
At1D1609_10890	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
At1D1609_10910	COG1418	mRNA catabolic process
At1D1609_10930	COG0346	lactoylglutathione lyase activity
At1D1609_10960	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_10970	COG3443	Belongs to the bacterial solute-binding protein 9 family
At1D1609_10980	COG0668	transmembrane transport
At1D1609_11000	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
At1D1609_11060	COG1742	UPF0060 membrane protein
At1D1609_11080	COG3706	GGDEF domain
At1D1609_11080	COG0745	RESPONSE REGULATOR receiver
At1D1609_11100	COG1183	phosphatidylcholine synthase activity
At1D1609_11110	COG0688	phosphatidylethanolamine metabolic process
At1D1609_11120	COG5265	(ABC) transporter
At1D1609_11230	COG2852	Protein conserved in bacteria
At1D1609_11250	COG0215	cysteine-tRNA ligase activity
At1D1609_11260	COG4221	oxidoreductase activity
At1D1609_11270	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
At1D1609_11280	COG1286	toxin biosynthetic process
At1D1609_11320	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
At1D1609_11340	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
At1D1609_11360	COG0305	Participates in initiation and elongation during chromosome replication
At1D1609_11410	COG0359	binds to the 23S rRNA
At1D1609_11430	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
At1D1609_11440	COG0360	Binds together with S18 to 16S ribosomal RNA
At1D1609_11470	COG0667	Aldo Keto reductase
At1D1609_11480	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
At1D1609_11500	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
At1D1609_11510	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
At1D1609_11520	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
At1D1609_11530	COG1561	YicC-like family, N-terminal region
At1D1609_11540	COG0194	GDP metabolic process
At1D1609_11570	COG0400	carboxylic ester hydrolase activity
At1D1609_11580	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
At1D1609_11590	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
At1D1609_11610	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
At1D1609_11640	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
At1D1609_11680	COG5001	Diguanylate cyclase
At1D1609_11680	COG2203	Gaf domain
At1D1609_11680	COG3706	GGDEF domain
At1D1609_11680	COG4251	negative regulation of phosphorylation
At1D1609_11690	COG3300	MHYT domain
At1D1609_11690	COG5001	Diguanylate cyclase
At1D1609_11700	COG0488	(ABC) transporter
At1D1609_11710	COG3706	GGDEF domain
At1D1609_11730	COG0105	UTP biosynthetic process
At1D1609_11770	COG0314	molybdopterin synthase activity
At1D1609_11790	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
At1D1609_11800	COG0322	excinuclease ABC activity
At1D1609_11810	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_11830	COG0625	glutathione transferase activity
At1D1609_11860	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
At1D1609_11870	COG0243	molybdopterin cofactor binding
At1D1609_11900	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
At1D1609_11910	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
At1D1609_11940	COG0628	permease
At1D1609_11960	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
At1D1609_11970	COG0248	Ppx GppA phosphatase
At1D1609_12020	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
At1D1609_12040	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
At1D1609_12050	COG0477	Major facilitator Superfamily
At1D1609_12060	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
At1D1609_12080	COG0659	secondary active sulfate transmembrane transporter activity
At1D1609_12100	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
At1D1609_12120	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
At1D1609_12140	COG0113	porphobilinogen synthase activity
At1D1609_12180	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
At1D1609_12190	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
At1D1609_12200	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
At1D1609_12200	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
At1D1609_12230	COG1280	lysine exporter protein (LysE YggA)
At1D1609_12240	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
At1D1609_12250	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
At1D1609_12260	COG2814	Major facilitator Superfamily
At1D1609_12270	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
At1D1609_12310	COG0416	fatty acid biosynthetic process
At1D1609_12320	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
At1D1609_12330	COG0776	regulation of translation
At1D1609_12390	COG0789	Transcriptional regulator
At1D1609_12400	COG0601	transmembrane transport
At1D1609_12410	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_12420	COG0444	Belongs to the ABC transporter superfamily
At1D1609_12460	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
At1D1609_12470	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
At1D1609_12490	COG3706	GGDEF domain
At1D1609_12490	COG0745	RESPONSE REGULATOR receiver
At1D1609_12500	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
At1D1609_12510	COG0583	DNA-binding transcription factor activity
At1D1609_12530	COG0737	Belongs to the 5'-nucleotidase family
At1D1609_12580	COG2897	thiosulfate sulfurtransferase activity
At1D1609_12610	COG0415	Belongs to the DNA photolyase family
At1D1609_12630	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
At1D1609_12680	COG3932	Exopolysaccharide synthesis, ExoD
At1D1609_12700	COG1238	metal cluster binding
At1D1609_12730	COG4139	cobalamin transport
At1D1609_12740	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
At1D1609_12760	COG1528	Iron-storage protein
At1D1609_12890	COG1612	heme a metabolic process
At1D1609_12910	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
At1D1609_12920	COG0010	Belongs to the arginase family
At1D1609_12930	COG1396	sequence-specific DNA binding
At1D1609_12940	COG4683	PFAM Phage derived protein Gp49-like (DUF891)
At1D1609_12950	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
At1D1609_12960	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
At1D1609_12980	COG1832	CoA-binding protein
At1D1609_13030	COG3706	GGDEF domain
At1D1609_13040	COG0740	serine-type endopeptidase activity
At1D1609_13050	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
At1D1609_13060	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
At1D1609_13080	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
At1D1609_13100	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
At1D1609_13110	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
At1D1609_13120	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
At1D1609_13140	COG0649	NAD binding
At1D1609_13160	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
At1D1609_13170	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
At1D1609_13190	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
At1D1609_13200	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
At1D1609_13220	COG0713	ATP synthesis coupled electron transport
At1D1609_13250	COG1007	ATP synthesis coupled electron transport
At1D1609_13290	COG0442	prolyl-tRNA aminoacylation
At1D1609_13310	COG1136	(ABC) transporter
At1D1609_13320	COG0587	DNA-directed DNA polymerase activity
At1D1609_13340	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
At1D1609_13360	COG0784	Response regulator, receiver
At1D1609_13370	COG0745	RESPONSE REGULATOR receiver
At1D1609_13370	COG3706	GGDEF domain
At1D1609_13380	COG0267	Belongs to the bacterial ribosomal protein bL33 family
At1D1609_13390	COG0477	Major facilitator Superfamily
At1D1609_13420	COG0557	exoribonuclease II activity
At1D1609_13430	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
At1D1609_13450	COG0758	DNA mediated transformation
At1D1609_13460	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
At1D1609_13480	COG0540	Belongs to the ATCase OTCase family
At1D1609_13500	COG1960	acyl-CoA dehydrogenase activity
At1D1609_13510	COG0456	acetyltransferase
At1D1609_13570	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
At1D1609_13580	COG2824	Alkylphosphonate utilization operon protein PhnA
At1D1609_13590	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
At1D1609_13600	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
At1D1609_13610	COG0154	amidase activity
At1D1609_13620	COG3811	Belongs to the UPF0386 family
At1D1609_13650	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
At1D1609_13670	COG0456	acetyltransferase
At1D1609_13710	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
At1D1609_13720	COG0439	Biotin carboxylase
At1D1609_13730	COG0511	ligase activity, forming carbon-carbon bonds
At1D1609_13740	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
At1D1609_13760	COG0436	Aminotransferase
At1D1609_13800	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_13810	COG1530	ribonuclease E activity
At1D1609_13840	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
At1D1609_13880	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
At1D1609_13890	COG0384	phenazine biosynthesis protein PhzF
At1D1609_13920	COG0633	Ferredoxin
At1D1609_13940	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
At1D1609_13950	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
At1D1609_13960	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
At1D1609_13980	COG3768	UPF0283 membrane protein
At1D1609_13990	COG3106	COG3106 Predicted ATPase
At1D1609_14010	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
At1D1609_14050	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
At1D1609_14110	COG0537	adenosine 5'-monophosphoramidase activity
At1D1609_14160	COG0052	Belongs to the universal ribosomal protein uS2 family
At1D1609_14170	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
At1D1609_14180	COG0528	UMP kinase activity
At1D1609_14190	COG0233	cytoplasmic translational termination
At1D1609_14200	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
At1D1609_14210	COG0575	Belongs to the CDS family
At1D1609_14220	COG0750	zinc metalloprotease
At1D1609_14230	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
At1D1609_14240	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
At1D1609_14250	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
At1D1609_14260	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
At1D1609_14270	COG3494	Protein of unknown function (DUF1009)
At1D1609_14280	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
At1D1609_14290	COG2186	Transcriptional regulator
At1D1609_14310	COG0765	amino acid transport
At1D1609_14340	COG0372	Belongs to the citrate synthase family
At1D1609_14370	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
At1D1609_14380	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1609_14390	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_14400	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_14410	COG3958	Transketolase
At1D1609_14420	COG3959	Transketolase, thiamine diphosphate binding domain
At1D1609_14430	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_14440	COG0583	DNA-binding transcription factor activity
At1D1609_14460	COG2376	Dihydroxyacetone kinase
At1D1609_14500	COG2877	3-deoxy-8-phosphooctulonate synthase activity
At1D1609_14510	COG0148	phosphopyruvate hydratase activity
At1D1609_14530	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
At1D1609_14540	COG0022	dehydrogenase e1 component
At1D1609_14540	COG0508	dehydrogenase complex catalyzes the overall conversion of
At1D1609_14550	COG0508	dehydrogenase complex catalyzes the overall conversion of
At1D1609_14570	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
At1D1609_14590	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
At1D1609_14600	COG3385	transposase activity
At1D1609_14610	COG0697	spore germination
At1D1609_14650	COG2867	negative regulation of translational initiation
At1D1609_14660	COG1546	Belongs to the CinA family
At1D1609_14670	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
At1D1609_14670	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
At1D1609_14690	COG3852	Histidine kinase
At1D1609_14700	COG2204	response regulator
At1D1609_14710	COG5000	phosphorelay sensor kinase activity
At1D1609_14720	COG2204	response regulator
At1D1609_14730	COG0569	domain protein
At1D1609_14740	COG1923	regulation of RNA biosynthetic process
At1D1609_14750	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
At1D1609_14760	COG3956	TIGRFAM MazG family protein
At1D1609_14780	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
At1D1609_14780	COG1648	precorrin-2 dehydrogenase activity
At1D1609_14860	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
At1D1609_14870	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
At1D1609_14870	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
At1D1609_14880	COG0509	glycine decarboxylation via glycine cleavage system
At1D1609_14890	COG0404	The glycine cleavage system catalyzes the degradation of glycine
At1D1609_14940	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
At1D1609_14990	COG0251	oxidation-reduction process
At1D1609_15000	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
At1D1609_15020	COG1671	Belongs to the UPF0178 family
At1D1609_15040	COG0450	alkyl hydroperoxide reductase
At1D1609_15080	COG0431	NADPH-dependent FMN reductase
At1D1609_15100	COG0798	PFAM Bile acid sodium symporter
At1D1609_15160	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
At1D1609_15160	COG0321	lipoyl(octanoyl) transferase activity
At1D1609_15170	COG0084	hydrolase, TatD family'
At1D1609_15180	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
At1D1609_15200	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
At1D1609_15290	COG1802	Transcriptional regulator
At1D1609_15290	COG4626	Terminase
At1D1609_15450	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
At1D1609_15460	COG2095	MarC family integral membrane protein
At1D1609_15470	COG2239	Acts as a magnesium transporter
At1D1609_15480	COG3668	Plasmid stabilization system
At1D1609_15490	COG3609	addiction module antidote protein, CC2985 family
At1D1609_15500	COG0629	single-stranded DNA binding
At1D1609_15510	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
At1D1609_15530	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
At1D1609_15570	COG1108	ABC-type Mn2 Zn2 transport systems permease components
At1D1609_15580	COG1121	(ABC) transporter
At1D1609_15590	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
At1D1609_15620	COG0667	Aldo Keto reductase
At1D1609_15640	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
At1D1609_15710	COG3385	transposase activity
At1D1609_15800	COG2239	Acts as a magnesium transporter
At1D1609_15810	COG0243	molybdopterin cofactor binding
At1D1609_15830	COG0242	peptide deformylase activity
At1D1609_15860	COG2202	Pas domain
At1D1609_15860	COG2205	protein histidine kinase activity
At1D1609_15880	COG0321	lipoyl(octanoyl) transferase activity
At1D1609_15890	COG1064	alcohol dehydrogenase
At1D1609_15980	COG1309	transcriptional regulator
At1D1609_15990	COG2124	cytochrome p450
At1D1609_16040	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D1609_16050	COG0626	cystathionine gamma-synthase activity
At1D1609_16060	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1609_16070	COG4597	amino acid ABC transporter
At1D1609_16080	COG0765	amino acid transport
At1D1609_16090	COG1126	abc transporter atp-binding protein
At1D1609_16100	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
At1D1609_16130	COG0436	Aminotransferase
At1D1609_16190	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
At1D1609_16210	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
At1D1609_16220	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
At1D1609_16230	COG0635	Involved in the biosynthesis of porphyrin-containing compound
At1D1609_16260	COG3243	poly(R)-hydroxyalkanoic acid synthase
At1D1609_16270	COG1489	DNA binding
At1D1609_16280	COG0024	Methionine aminopeptidase
At1D1609_16290	COG2003	Belongs to the UPF0758 family
At1D1609_16320	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
At1D1609_16350	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
At1D1609_16360	COG0546	phosphoglycolate phosphatase activity
At1D1609_16380	COG0114	fumarate hydratase activity
At1D1609_16390	COG0504	CTP synthase activity
At1D1609_16410	COG0149	triose-phosphate isomerase activity
At1D1609_16430	COG0187	DNA topoisomerase II activity
At1D1609_16490	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
At1D1609_16490	COG3210	domain, Protein
At1D1609_16490	COG3064	Membrane
At1D1609_16520	COG3210	domain, Protein
At1D1609_16550	COG0740	serine-type endopeptidase activity
At1D1609_16570	COG0640	Transcriptional regulator
At1D1609_16580	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
At1D1609_16610	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
At1D1609_16610	COG3264	Mechanosensitive ion channel
At1D1609_16740	COG1127	ABC transporter
At1D1609_16750	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
At1D1609_16760	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1609_16780	COG0281	malic enzyme
At1D1609_16780	COG0280	phosphate acetyltransferase
At1D1609_16810	COG0778	Nitroreductase
At1D1609_16820	COG0823	Involved in the tonB-independent uptake of proteins
At1D1609_16850	COG1368	sulfuric ester hydrolase activity
At1D1609_16890	COG0544	peptidyl-prolyl cis-trans isomerase activity
At1D1609_16940	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
At1D1609_16980	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
At1D1609_17010	COG0318	PFAM AMP-dependent synthetase and ligase
At1D1609_17040	COG0343	queuine tRNA-ribosyltransferase activity
At1D1609_17050	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
At1D1609_17060	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
At1D1609_17070	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
At1D1609_17080	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
At1D1609_17120	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
At1D1609_17130	COG0134	indole-3-glycerol-phosphate synthase activity
At1D1609_17140	COG0315	cyclic pyranopterin monophosphate synthase activity
At1D1609_17150	COG0303	'Molybdopterin
At1D1609_17160	COG3706	GGDEF domain
At1D1609_17180	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
At1D1609_17180	COG0475	glutathione-regulated potassium exporter activity
At1D1609_17200	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
At1D1609_17210	COG0697	spore germination
At1D1609_17220	COG2814	Major facilitator Superfamily
At1D1609_17230	COG0746	molybdenum cofactor guanylyltransferase activity
At1D1609_17240	COG1763	Mo-molybdopterin cofactor biosynthetic process
At1D1609_17250	COG0739	heme binding
At1D1609_17260	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
At1D1609_17270	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
At1D1609_17280	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
At1D1609_17290	COG0805	protein transport
At1D1609_17300	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
At1D1609_17310	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
At1D1609_17320	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
At1D1609_17330	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
At1D1609_17340	COG1472	Belongs to the glycosyl hydrolase 3 family
At1D1609_17360	COG0018	arginyl-trna synthetase
At1D1609_17370	COG0232	Belongs to the dGTPase family. Type 2 subfamily
At1D1609_17420	COG0525	valine-tRNA ligase activity
At1D1609_17440	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
At1D1609_17500	COG2264	protein methyltransferase activity
At1D1609_17770	COG3567	Phage-associated protein, HI1409 family
At1D1609_17850	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
At1D1609_17900	COG0270	DNA (cytosine-5-)-methyltransferase activity
At1D1609_18310	COG0655	NAD(P)H dehydrogenase (quinone) activity
At1D1609_18320	COG1058	Belongs to the CinA family
At1D1609_18320	COG1546	Belongs to the CinA family
At1D1609_18330	COG0589	response to stress
At1D1609_18340	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
At1D1609_18360	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
At1D1609_18450	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
At1D1609_18460	COG2801	Transposase and inactivated derivatives
At1D1609_18500	COG1914	H( )-stimulated, divalent metal cation uptake system
At1D1609_18520	COG1132	(ABC) transporter
At1D1609_18530	COG0628	permease
At1D1609_18540	COG3385	transposase activity
At1D1609_18610	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
At1D1609_18630	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
At1D1609_18650	COG0302	gtp cyclohydrolase
At1D1609_18660	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
At1D1609_18670	COG1752	Esterase of the alpha-beta hydrolase superfamily
At1D1609_18680	COG0517	IMP dehydrogenase activity
At1D1609_18680	COG0516	GMP reductase activity
At1D1609_18740	COG1760	l-serine dehydratase
At1D1609_18810	COG0583	DNA-binding transcription factor activity
At1D1609_18840	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
At1D1609_18840	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
At1D1609_18850	COG0347	Belongs to the P(II) protein family
At1D1609_18860	COG0174	glutamine synthetase
At1D1609_18920	COG0697	spore germination
At1D1609_18930	COG0300	oxidoreductase activity
At1D1609_18950	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
At1D1609_18970	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
At1D1609_18990	COG3668	Plasmid stabilization system
At1D1609_19000	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
At1D1609_19030	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
At1D1609_19040	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
At1D1609_19050	COG2186	Transcriptional regulator
At1D1609_19090	COG1129	ABC transporter
At1D1609_19100	COG1183	phosphatidylcholine synthase activity
At1D1609_19110	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D1609_19120	COG0679	Auxin Efflux Carrier
At1D1609_19130	COG0785	Cytochrome C biogenesis protein
At1D1609_19150	COG0346	lactoylglutathione lyase activity
At1D1609_19160	COG1278	Cold shock
At1D1609_19480	COG1136	(ABC) transporter
At1D1609_19480	COG0577	efflux transmembrane transporter activity
At1D1609_19490	COG1136	(ABC) transporter
At1D1609_19490	COG0577	efflux transmembrane transporter activity
At1D1609_19540	COG2151	metal-sulfur cluster biosynthetic enzyme
At1D1609_19550	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
At1D1609_19560	COG0719	Fe-S assembly protein
At1D1609_19570	COG0396	ATPase activity
At1D1609_19580	COG0719	Fe-S assembly protein
At1D1609_19590	COG1104	cysteine desulfurase activity
At1D1609_19600	COG2945	thiolester hydrolase activity
At1D1609_19610	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
At1D1609_19620	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
At1D1609_19640	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
At1D1609_19650	COG2833	Protein of unknown function (DUF455)
At1D1609_19660	COG0739	heme binding
At1D1609_19670	COG0513	Belongs to the DEAD box helicase family
At1D1609_19730	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
At1D1609_19750	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
At1D1609_19760	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
At1D1609_19770	COG0047	phosphoribosylformylglycinamidine synthase activity
At1D1609_19800	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D1609_19820	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
At1D1609_19870	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
At1D1609_19880	COG2814	Major facilitator Superfamily
At1D1609_19890	COG3385	transposase activity
At1D1609_19900	COG0483	inositol monophosphate 1-phosphatase activity
At1D1609_19910	COG0483	inositol monophosphate 1-phosphatase activity
At1D1609_19920	COG0037	tRNA processing
At1D1609_19930	COG2066	Belongs to the glutaminase family
At1D1609_19940	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
At1D1609_19950	COG0861	Integral membrane protein TerC family
At1D1609_19980	COG1280	lysine exporter protein (LysE YggA)
At1D1609_19990	COG3093	addiction module antidote protein HigA
At1D1609_20030	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
At1D1609_20040	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
At1D1609_20060	COG0538	isocitrate dehydrogenase activity
At1D1609_20080	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
At1D1609_20090	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
At1D1609_20100	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_20110	COG2313	pseudouridylate synthase activity
At1D1609_20130	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1609_20140	COG4215	(ABC) transporter
At1D1609_20160	COG5425	PFAM Usg family protein
At1D1609_20180	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D1609_20190	COG1522	sequence-specific DNA binding
At1D1609_20200	COG1573	uracil-dna glycosylase
At1D1609_20220	COG2202	Pas domain
At1D1609_20220	COG2205	protein histidine kinase activity
At1D1609_20240	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
At1D1609_20250	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
At1D1609_20290	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
At1D1609_20300	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_20310	COG1129	ABC transporter
At1D1609_20320	COG1879	ABC-type sugar transport system periplasmic component
At1D1609_20330	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_20340	COG3959	Transketolase, thiamine diphosphate binding domain
At1D1609_20350	COG3958	Transketolase
At1D1609_20360	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
At1D1609_20370	COG2390	Transcriptional regulator
At1D1609_20390	COG0842	Transport permease protein
At1D1609_20400	COG1131	(ABC) transporter
At1D1609_20430	COG0840	transmembrane signaling receptor activity
At1D1609_20450	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
At1D1609_20460	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
At1D1609_20520	COG0129	dihydroxy-acid dehydratase activity
At1D1609_20530	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
At1D1609_20540	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
At1D1609_20560	COG3739	integral membrane protein
At1D1609_20580	COG0203	ribosomal protein L17
At1D1609_20590	COG0202	RNA polymerase activity
At1D1609_20600	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
At1D1609_20610	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
At1D1609_20620	COG0563	adenylate kinase activity
At1D1609_20630	COG0201	protein transport
At1D1609_20640	COG0200	Binds to the 23S rRNA
At1D1609_20650	COG1841	ribosomal large subunit assembly
At1D1609_20660	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
At1D1609_20670	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
At1D1609_20680	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
At1D1609_20690	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
At1D1609_20700	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
At1D1609_20710	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
At1D1609_20720	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
At1D1609_20730	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
At1D1609_20740	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
At1D1609_20750	COG0255	Belongs to the universal ribosomal protein uL29 family
At1D1609_20760	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
At1D1609_20770	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
At1D1609_20780	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
At1D1609_20790	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
At1D1609_20800	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
At1D1609_20810	COG0089	rRNA binding
At1D1609_20820	COG0088	Forms part of the polypeptide exit tunnel
At1D1609_20830	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
At1D1609_20840	COG0051	transcription antitermination factor activity, RNA binding
At1D1609_20850	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
At1D1609_20860	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
At1D1609_20870	COG0049	tRNA binding
At1D1609_20880	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
At1D1609_20920	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
At1D1609_20930	COG0085	RNA polymerase activity
At1D1609_20940	COG0222	ribosome binding
At1D1609_20950	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
At1D1609_20960	COG0081	regulation of translation
At1D1609_20970	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
At1D1609_21010	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
At1D1609_21020	COG0861	Integral membrane protein TerC family
At1D1609_21040	COG3895	Periplasmic Protein
At1D1609_21100	COG2205	protein histidine kinase activity
At1D1609_21100	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1609_21100	COG0784	Response regulator, receiver
At1D1609_21100	COG2198	Histidine kinase
At1D1609_21110	COG0784	Response regulator, receiver
At1D1609_21120	COG2202	Pas domain
At1D1609_21120	COG3920	Histidine kinase
At1D1609_21130	COG0784	Response regulator, receiver
At1D1609_21140	COG4251	negative regulation of phosphorylation
At1D1609_21150	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
At1D1609_21160	COG1607	acyl-coa hydrolase
At1D1609_21200	COG2910	NAD(P)H-binding
At1D1609_21210	COG1733	regulation of RNA biosynthetic process
At1D1609_21220	COG0456	acetyltransferase
At1D1609_21220	COG0454	-acetyltransferase
At1D1609_21240	COG0556	nucleotide-excision repair
At1D1609_21250	COG2382	esterase
At1D1609_21290	COG0484	heat shock protein binding
At1D1609_21340	COG3842	ATPase activity
At1D1609_21350	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
At1D1609_21360	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D1609_21370	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D1609_21400	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
At1D1609_21430	COG2207	Transcriptional regulator
At1D1609_21440	COG1064	alcohol dehydrogenase
At1D1609_21450	COG1252	NADH dehydrogenase
At1D1609_21460	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
At1D1609_21480	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
At1D1609_21490	COG1090	epimerase
At1D1609_21570	COG0656	L-ascorbic acid biosynthetic process
At1D1609_21600	COG0440	acetolactate synthase activity
At1D1609_21610	COG0028	Belongs to the TPP enzyme family
At1D1609_21630	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
At1D1609_21640	COG3830	Belongs to the UPF0237 family
At1D1609_21640	COG0560	Phosphoserine phosphatase
At1D1609_21660	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_21680	COG0330	HflC and HflK could
At1D1609_21690	COG0330	HflC and HflK could
At1D1609_21710	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
At1D1609_21770	COG0277	FAD linked oxidase domain protein
At1D1609_21780	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
At1D1609_21870	COG1335	isochorismatase
At1D1609_21930	COG2264	protein methyltransferase activity
At1D1609_21960	COG0835	chemotaxis
At1D1609_21980	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
At1D1609_21990	COG0583	DNA-binding transcription factor activity
At1D1609_22010	COG1247	-acetyltransferase
At1D1609_22030	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
At1D1609_22040	COG0497	DNA recombination
At1D1609_22050	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
At1D1609_22070	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
At1D1609_22080	COG0849	cell division
At1D1609_22090	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
At1D1609_22100	COG1181	Belongs to the D-alanine--D-alanine ligase family
At1D1609_22110	COG0477	Major facilitator Superfamily
At1D1609_22120	COG3300	MHYT domain
At1D1609_22120	COG5001	Diguanylate cyclase
At1D1609_22130	COG0812	UDP-N-acetylmuramate dehydrogenase activity
At1D1609_22140	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
At1D1609_22150	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
At1D1609_22170	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
At1D1609_22180	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
At1D1609_22200	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
At1D1609_22230	COG0275	rRNA processing
At1D1609_22240	COG2001	Belongs to the MraZ family
At1D1609_22300	COG3023	N-Acetylmuramoyl-L-alanine amidase
At1D1609_22310	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
At1D1609_22360	COG4106	trans-aconitate 2-methyltransferase activity
At1D1609_22420	COG2267	carboxylic ester hydrolase activity
At1D1609_22430	COG1804	L-carnitine dehydratase bile acid-inducible protein F
At1D1609_22490	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1609_22500	COG2814	Major facilitator Superfamily
At1D1609_22540	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_22550	COG0174	glutamine synthetase
At1D1609_22560	COG0531	amino acid
At1D1609_22580	COG1737	Transcriptional regulator
At1D1609_22620	COG3842	ATPase activity
At1D1609_22650	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
At1D1609_22730	COG2968	Membrane
At1D1609_22750	COG0432	Pfam Uncharacterised protein family UPF0047
At1D1609_22780	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
At1D1609_22790	COG0358	DNA primase activity
At1D1609_22810	COG0505	Belongs to the CarA family
At1D1609_22820	COG0534	Mate efflux family protein
At1D1609_22850	COG2321	neutral zinc metallopeptidase
At1D1609_22880	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
At1D1609_22900	COG3706	GGDEF domain
At1D1609_22930	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
At1D1609_22950	COG1522	sequence-specific DNA binding
At1D1609_22960	COG0492	ferredoxin-NADP+ reductase activity
At1D1609_22970	COG0583	DNA-binding transcription factor activity
At1D1609_22990	COG1902	pentaerythritol trinitrate reductase activity
At1D1609_23040	COG0387	Pfam Sodium calcium exchanger
At1D1609_23060	COG2199	diguanylate cyclase activity
At1D1609_23060	COG2200	EAL domain
At1D1609_23090	COG1278	Cold shock
At1D1609_23100	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
At1D1609_23120	COG1846	Transcriptional regulator
At1D1609_23130	COG0745	RESPONSE REGULATOR receiver
At1D1609_23140	COG2205	protein histidine kinase activity
At1D1609_23150	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
At1D1609_23190	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
At1D1609_23220	COG0006	proline dipeptidase activity
At1D1609_23240	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
At1D1609_23280	COG1215	transferase activity, transferring glycosyl groups
At1D1609_23290	COG0840	transmembrane signaling receptor activity
At1D1609_23300	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_23320	COG3300	MHYT domain
At1D1609_23320	COG5001	Diguanylate cyclase
At1D1609_23330	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
At1D1609_23340	COG5001	Diguanylate cyclase
At1D1609_23360	COG0193	aminoacyl-tRNA hydrolase activity
At1D1609_23380	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
At1D1609_23420	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
At1D1609_23440	COG2857	Cytochrome c1
At1D1609_23440	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
At1D1609_23480	COG1132	(ABC) transporter
At1D1609_23490	COG1132	(ABC) transporter
At1D1609_23500	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
At1D1609_23530	COG0408	coproporphyrinogen oxidase activity
At1D1609_23560	COG0617	tRNA 3'-terminal CCA addition
At1D1609_23590	COG0714	Associated with various cellular activities
At1D1609_23630	COG0454	-acetyltransferase
At1D1609_23660	COG0477	Major facilitator Superfamily
At1D1609_23680	COG0435	Glutathione S-transferase
At1D1609_23690	COG0494	nUDIX hydrolase
At1D1609_23710	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
At1D1609_23730	COG3135	benzoate transporter
At1D1609_23750	COG4944	Protein of unknown function (DUF1109)
At1D1609_23780	COG0740	serine-type endopeptidase activity
At1D1609_23810	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
At1D1609_23820	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
At1D1609_23870	COG4175	Glycine betaine
At1D1609_23900	COG1435	thymidine kinase activity
At1D1609_23940	COG2862	Uncharacterized protein family, UPF0114
At1D1609_23950	COG4771	TonB-dependent receptor
At1D1609_23950	COG1629	transport
At1D1609_23970	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
At1D1609_23970	COG0512	Glutamine amidotransferase of anthranilate synthase
At1D1609_24000	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
At1D1609_24020	COG0366	Alpha amylase catalytic
At1D1609_24030	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_24060	COG1160	GTP binding
At1D1609_24100	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
At1D1609_24120	COG0024	Methionine aminopeptidase
At1D1609_24140	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_24170	COG1529	Aldehyde oxidase and xanthine dehydrogenase
At1D1609_24200	COG0583	DNA-binding transcription factor activity
At1D1609_24230	COG0402	S-adenosylhomocysteine deaminase activity
At1D1609_24250	COG1304	FMN binding
At1D1609_24270	COG1309	transcriptional regulator
At1D1609_24280	COG1686	Belongs to the peptidase S11 family
At1D1609_24300	COG2351	hydroxyisourate hydrolase activity
At1D1609_24310	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
At1D1609_24360	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
At1D1609_24380	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_24380	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
At1D1609_24390	COG2205	protein histidine kinase activity
At1D1609_24390	COG0784	Response regulator, receiver
At1D1609_24390	COG5002	protein histidine kinase activity
At1D1609_24400	COG0513	Belongs to the DEAD box helicase family
At1D1609_24420	COG2259	Doxx family
At1D1609_24430	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1609_24450	COG2308	Evidence 4 Homologs of previously reported genes of
At1D1609_24470	COG1305	Transglutaminase-like
At1D1609_24480	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
At1D1609_24530	COG4214	carbohydrate transport
At1D1609_24550	COG4213	ABC transporter substrate-binding protein
At1D1609_24610	COG0840	transmembrane signaling receptor activity
At1D1609_24640	COG4215	(ABC) transporter
At1D1609_24710	COG1215	transferase activity, transferring glycosyl groups
At1D1609_24740	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
At1D1609_24770	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
At1D1609_24780	COG2346	COG2346, Truncated hemoglobins
At1D1609_24820	COG1309	transcriptional regulator
At1D1609_24850	COG0494	nUDIX hydrolase
At1D1609_24870	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_24880	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_24930	COG1234	tRNA 3'-trailer cleavage
At1D1609_24940	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
At1D1609_24950	COG0830	nickel cation binding
At1D1609_24960	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
At1D1609_25000	COG0804	urea catabolic process
At1D1609_25010	COG1442	glycosyl transferase family 8
At1D1609_25020	COG3755	Protein conserved in bacteria
At1D1609_25040	COG0832	Belongs to the urease beta subunit family
At1D1609_25050	COG3813	Protein conserved in bacteria
At1D1609_25060	COG0831	urea catabolic process
At1D1609_25070	COG0829	nickel cation binding
At1D1609_25130	COG0559	Belongs to the binding-protein-dependent transport system permease family
At1D1609_25180	COG0174	glutamine synthetase
At1D1609_25190	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_25200	COG5002	protein histidine kinase activity
At1D1609_25200	COG2198	Histidine kinase
At1D1609_25200	COG0784	Response regulator, receiver
At1D1609_25270	COG0411	ABC transporter
At1D1609_25300	COG1218	3'(2'),5'-bisphosphate nucleotidase
At1D1609_25460	COG0564	pseudouridine synthase activity
At1D1609_25480	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
At1D1609_25500	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
At1D1609_25580	COG0346	lactoylglutathione lyase activity
At1D1609_25600	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
At1D1609_25620	COG2832	Protein of unknown function (DUF454)
At1D1609_25630	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
At1D1609_25640	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_25650	COG4558	Periplasmic binding protein
At1D1609_25670	COG3721	Heme iron utilization protein
At1D1609_25700	COG3657	addiction module killer protein
At1D1609_25720	COG2205	protein histidine kinase activity
At1D1609_25800	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_25810	COG4605	iron ion homeostasis
At1D1609_25820	COG4604	ABC transporter, ATP-binding protein
At1D1609_25830	COG0783	Belongs to the Dps family
At1D1609_25850	COG0656	L-ascorbic acid biosynthetic process
At1D1609_25860	COG2814	Major facilitator Superfamily
At1D1609_25880	COG0583	DNA-binding transcription factor activity
At1D1609_25900	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_25940	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
At1D1609_25950	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
At1D1609_25960	COG0288	reversible hydration of carbon dioxide
At1D1609_25980	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
At1D1609_26010	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
At1D1609_26020	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D1609_26030	COG0778	Nitroreductase
At1D1609_26040	COG2267	carboxylic ester hydrolase activity
At1D1609_26050	COG0251	oxidation-reduction process
At1D1609_26060	COG1335	isochorismatase
At1D1609_26070	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_26090	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_26120	COG1175	transmembrane transport
At1D1609_26130	COG0395	ABC-type sugar transport system, permease component
At1D1609_26140	COG3842	ATPase activity
At1D1609_26150	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_26170	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
At1D1609_26210	COG4608	Belongs to the ABC transporter superfamily
At1D1609_26220	COG0444	Belongs to the ABC transporter superfamily
At1D1609_26240	COG0601	transmembrane transport
At1D1609_26250	COG4166	transmembrane transport
At1D1609_26280	COG0392	lysyltransferase activity
At1D1609_26280	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
At1D1609_26340	COG1454	alcohol dehydrogenase
At1D1609_26350	COG2159	amidohydrolase
At1D1609_26360	COG1960	acyl-CoA dehydrogenase activity
At1D1609_26400	COG1902	pentaerythritol trinitrate reductase activity
At1D1609_26400	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D1609_26410	COG3842	ATPase activity
At1D1609_26430	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D1609_26440	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D1609_26450	COG0745	RESPONSE REGULATOR receiver
At1D1609_26470	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
At1D1609_26480	COG0583	DNA-binding transcription factor activity
At1D1609_26490	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1609_26500	COG0642	Histidine kinase
At1D1609_26510	COG0745	RESPONSE REGULATOR receiver
At1D1609_26530	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
At1D1609_26530	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
At1D1609_26540	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
At1D1609_26580	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
At1D1609_26640	COG1454	alcohol dehydrogenase
At1D1609_26650	COG1609	Transcriptional regulator
At1D1609_26680	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_26690	COG1735	metal-dependent hydrolase with the TIM-barrel fold
At1D1609_26740	COG1804	L-carnitine dehydratase bile acid-inducible protein F
At1D1609_26760	COG0583	DNA-binding transcription factor activity
At1D1609_26860	COG1573	uracil-dna glycosylase
At1D1609_27000	COG3685	Protein conserved in bacteria
At1D1609_27010	COG0753	catalase activity
At1D1609_27060	COG4221	oxidoreductase activity
At1D1609_27070	COG0625	glutathione transferase activity
At1D1609_27090	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_27110	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
At1D1609_27120	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
At1D1609_27160	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
At1D1609_27180	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_27190	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
At1D1609_27210	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
At1D1609_27220	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
At1D1609_27230	COG1509	lysine 2,3-aminomutase activity
At1D1609_27260	COG0583	DNA-binding transcription factor activity
At1D1609_27270	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_27280	COG0725	ABC transporter, periplasmic molybdate-binding protein
At1D1609_27290	COG4149	molybdate abc transporter
At1D1609_27300	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
At1D1609_27330	COG2022	thiamine diphosphate biosynthetic process
At1D1609_27360	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
At1D1609_27370	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
At1D1609_27390	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
At1D1609_27430	COG1132	(ABC) transporter
At1D1609_27440	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
At1D1609_27530	COG4166	transmembrane transport
At1D1609_27540	COG0601	transmembrane transport
At1D1609_27550	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_27570	COG0438	transferase activity, transferring glycosyl groups
At1D1609_27580	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
At1D1609_27590	COG3142	Participates in the control of copper homeostasis
At1D1609_27600	COG2814	Major facilitator Superfamily
At1D1609_27630	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_27640	COG1737	Transcriptional regulator
At1D1609_27660	COG3842	ATPase activity
At1D1609_27680	COG0395	ABC-type sugar transport system, permease component
At1D1609_27730	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
At1D1609_27740	COG1940	carbohydrate kinase activity
At1D1609_27750	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D1609_27760	COG0671	phosphoesterase, PA-phosphatase related
At1D1609_27770	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
At1D1609_27780	COG0156	8-amino-7-oxononanoate synthase activity
At1D1609_27800	COG0729	surface antigen
At1D1609_27820	COG0835	chemotaxis
At1D1609_27840	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
At1D1609_27850	COG0355	proton-transporting ATP synthase activity, rotational mechanism
At1D1609_27860	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
At1D1609_27870	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
At1D1609_27880	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
At1D1609_27890	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
At1D1609_27920	COG4974	Belongs to the 'phage' integrase family
At1D1609_27970	COG1280	lysine exporter protein (LysE YggA)
At1D1609_27990	COG0508	dehydrogenase complex catalyzes the overall conversion of
At1D1609_28000	COG0567	Dehydrogenase, E1 component
At1D1609_28010	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
At1D1609_28020	COG0045	succinate-CoA ligase (ADP-forming) activity
At1D1609_28030	COG0039	L-malate dehydrogenase activity
At1D1609_28040	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
At1D1609_28110	COG2264	protein methyltransferase activity
At1D1609_28140	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
At1D1609_28150	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
At1D1609_28160	COG0181	hydroxymethylbilane synthase activity
At1D1609_28240	COG1872	DUF167
At1D1609_28250	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
At1D1609_28280	COG0339	signal peptide processing
At1D1609_28290	COG1846	Transcriptional regulator
At1D1609_28310	COG0137	argininosuccinate synthase activity
At1D1609_28330	COG1280	lysine exporter protein (LysE YggA)
At1D1609_28340	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
At1D1609_28350	COG4120	Belongs to the binding-protein-dependent transport system permease family
At1D1609_28370	COG0820	rRNA (adenine-C2-)-methyltransferase activity
At1D1609_28400	COG2154	pterin-4-alpha-carbinolamine dehydratase
At1D1609_28410	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
At1D1609_28420	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
At1D1609_28440	COG4181	ATPase activity
At1D1609_28460	COG0670	Belongs to the BI1 family
At1D1609_28490	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
At1D1609_28500	COG4133	protoheme IX ABC transporter activity
At1D1609_28510	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
At1D1609_28520	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
At1D1609_28550	COG3706	GGDEF domain
At1D1609_28570	COG2917	probably involved in intracellular septation
At1D1609_28580	COG0552	protein localization to endoplasmic reticulum
At1D1609_28590	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
At1D1609_28600	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
At1D1609_28620	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
At1D1609_28630	COG0287	Prephenate dehydrogenase
At1D1609_28630	COG1605	Chorismate mutase
At1D1609_28640	COG0228	four-way junction DNA binding
At1D1609_28650	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
At1D1609_28660	COG0336	Belongs to the RNA methyltransferase TrmD family
At1D1609_28680	COG0335	large ribosomal subunit rRNA binding
At1D1609_28690	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
At1D1609_28700	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_28740	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
At1D1609_28750	COG4783	chaperone-mediated protein folding
At1D1609_28760	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
At1D1609_28820	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
At1D1609_28840	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
At1D1609_28850	COG0142	geranyltranstransferase activity
At1D1609_28860	COG2885	chlorophyll binding
At1D1609_28870	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
At1D1609_28880	COG2223	nitrite transmembrane transporter activity
At1D1609_28890	COG1349	DNA-binding transcription factor activity
At1D1609_28900	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
At1D1609_28910	COG2197	response regulator
At1D1609_28920	COG1132	(ABC) transporter
At1D1609_28940	COG3459	Glycosyltransferase 36 associated
At1D1609_28950	COG1473	amidohydrolase
At1D1609_28970	COG0579	oxidoreductase
At1D1609_28990	COG0129	dihydroxy-acid dehydratase activity
At1D1609_29000	COG2084	Dehydrogenase
At1D1609_29010	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1609_29020	COG0277	FAD linked oxidase domain protein
At1D1609_29030	COG2186	Transcriptional regulator
At1D1609_29050	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
At1D1609_29060	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1609_29070	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_29080	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
At1D1609_29100	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
At1D1609_29110	COG0495	leucyl-tRNA aminoacylation
At1D1609_29150	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
At1D1609_29170	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D1609_29180	COG1946	Acyl-CoA thioesterase
At1D1609_29190	COG0347	Belongs to the P(II) protein family
At1D1609_29200	COG0004	ammonium transporteR
At1D1609_29210	COG1674	ftsk spoiiie
At1D1609_29220	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
At1D1609_29250	COG0745	RESPONSE REGULATOR receiver
At1D1609_29270	COG1329	Transcriptional regulator
At1D1609_29290	COG2270	Major facilitator Superfamily
At1D1609_29320	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_29350	COG0494	nUDIX hydrolase
At1D1609_29360	COG2861	carbohydrate metabolic process
At1D1609_29370	COG0793	Belongs to the peptidase S41A family
At1D1609_29390	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
At1D1609_29400	COG0799	negative regulation of ribosome biogenesis
At1D1609_29410	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
At1D1609_29420	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
At1D1609_29430	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
At1D1609_29440	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
At1D1609_29470	COG0211	Belongs to the bacterial ribosomal protein bL27 family
At1D1609_29480	COG0261	This protein binds to 23S rRNA in the presence of protein L20
At1D1609_29530	COG0066	3-isopropylmalate dehydratase activity
At1D1609_29540	COG0473	3-isopropylmalate dehydrogenase activity
At1D1609_29550	COG1858	cytochrome C peroxidase
At1D1609_29560	COG1797	cobyrinic acid a,c-diamide synthase activity
At1D1609_29580	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
At1D1609_29710	COG1492	cobalamin metabolic process
At1D1609_29740	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1609_29750	COG3254	rhamnose metabolic process
At1D1609_29760	COG0246	Mannitol dehydrogenase
At1D1609_29770	COG1063	alcohol dehydrogenase
At1D1609_29810	COG4214	carbohydrate transport
At1D1609_29820	COG1129	ABC transporter
At1D1609_29830	COG2186	Transcriptional regulator
At1D1609_29840	COG2721	sulfolactate sulfo-lyase activity
At1D1609_29850	COG0138	bifunctional purine biosynthesis protein purh
At1D1609_29870	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
At1D1609_29870	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
At1D1609_29880	COG0501	Belongs to the peptidase M48B family
At1D1609_29900	COG1475	DNA binding
At1D1609_29910	COG1192	Involved in chromosome partitioning
At1D1609_29920	COG0357	Ribosomal RNA small subunit methyltransferase G
At1D1609_29930	COG0445	tRNA wobble uridine modification
At1D1609_29940	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
At1D1609_29950	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
At1D1609_29970	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
At1D1609_30010	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
At1D1609_30030	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
At1D1609_30110	COG0745	RESPONSE REGULATOR receiver
At1D1609_30120	COG2205	protein histidine kinase activity
At1D1609_30130	COG1764	response to oxidative stress
At1D1609_30170	COG0783	Belongs to the Dps family
At1D1609_30180	COG0243	molybdopterin cofactor binding
At1D1609_30200	COG4566	intracellular signal transduction
At1D1609_30210	COG4566	intracellular signal transduction
At1D1609_30230	COG2140	Oxalate decarboxylase
At1D1609_30240	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D1609_30260	COG0702	epimerase
At1D1609_30280	COG2801	Transposase and inactivated derivatives
At1D1609_30290	COG2233	PERMEase
At1D1609_30390	COG0395	ABC-type sugar transport system, permease component
At1D1609_30400	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1609_30420	COG3842	ATPase activity
At1D1609_30490	COG1653	transport
At1D1609_30510	COG0395	ABC-type sugar transport system, permease component
At1D1609_30520	COG3842	ATPase activity
At1D1609_30540	COG0395	ABC-type sugar transport system, permease component
At1D1609_30550	COG1175	transmembrane transport
At1D1609_30640	COG1082	Xylose isomerase domain protein TIM barrel
At1D1609_30660	COG3842	ATPase activity
At1D1609_30670	COG0395	ABC-type sugar transport system, permease component
At1D1609_30680	COG1175	transmembrane transport
At1D1609_30690	COG1653	transport
At1D1609_30700	COG1309	transcriptional regulator
At1D1609_30710	COG0673	inositol 2-dehydrogenase activity
At1D1609_30740	COG0673	inositol 2-dehydrogenase activity
At1D1609_30770	COG1278	Cold shock
At1D1609_30830	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
At1D1609_30840	COG0577	efflux transmembrane transporter activity
At1D1609_30840	COG1136	(ABC) transporter
At1D1609_30850	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_30880	COG0745	RESPONSE REGULATOR receiver
At1D1609_30900	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
At1D1609_30940	COG0395	ABC-type sugar transport system, permease component
At1D1609_30950	COG1175	transmembrane transport
At1D1609_30990	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_31000	COG3618	amidohydrolase
At1D1609_31010	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1609_31020	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_31030	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_31040	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
At1D1609_31050	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1609_31060	COG2186	Transcriptional regulator
At1D1609_31150	COG4977	sequence-specific DNA binding
At1D1609_31160	COG2223	nitrite transmembrane transporter activity
At1D1609_31170	COG0583	DNA-binding transcription factor activity
At1D1609_31180	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1609_31200	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_31210	COG2084	Dehydrogenase
At1D1609_31240	COG1609	Transcriptional regulator
At1D1609_31250	COG1063	alcohol dehydrogenase
At1D1609_31260	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_31280	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_31290	COG4573	that is required for full activity and stability of the Y subunit. Could have a chaperone-like function for the proper and stable folding of
At1D1609_31300	COG1175	transmembrane transport
At1D1609_31310	COG0395	ABC-type sugar transport system, permease component
At1D1609_31340	COG0395	ABC-type sugar transport system, permease component
At1D1609_31370	COG0626	cystathionine gamma-synthase activity
At1D1609_31400	COG0803	Belongs to the bacterial solute-binding protein 9 family
At1D1609_31420	COG1121	(ABC) transporter
At1D1609_31430	COG0523	cobalamin synthesis protein
At1D1609_31460	COG0523	cobalamin synthesis protein
At1D1609_31470	COG1653	transport
At1D1609_31480	COG1175	transmembrane transport
At1D1609_31490	COG0395	ABC-type sugar transport system, permease component
At1D1609_31500	COG3842	ATPase activity
At1D1609_31520	COG3047	cAMP biosynthetic process
At1D1609_31570	COG0583	DNA-binding transcription factor activity
At1D1609_31580	COG1879	ABC-type sugar transport system periplasmic component
At1D1609_31590	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_31600	COG1129	ABC transporter
At1D1609_31620	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
At1D1609_31630	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_31650	COG3257	ureidoglycine aminohydrolase activity
At1D1609_31670	COG5001	Diguanylate cyclase
At1D1609_31680	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
At1D1609_31700	COG0747	negative chemotaxis
At1D1609_31710	COG0601	transmembrane transport
At1D1609_31720	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_31730	COG0444	Belongs to the ABC transporter superfamily
At1D1609_31740	COG4608	Belongs to the ABC transporter superfamily
At1D1609_31750	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
At1D1609_31780	COG0346	lactoylglutathione lyase activity
At1D1609_31790	COG0129	dihydroxy-acid dehydratase activity
At1D1609_31800	COG1879	ABC-type sugar transport system periplasmic component
At1D1609_31810	COG1129	ABC transporter
At1D1609_31820	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_31830	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_31840	COG2186	Transcriptional regulator
At1D1609_31870	COG0587	DNA-directed DNA polymerase activity
At1D1609_31880	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
At1D1609_31930	COG0673	inositol 2-dehydrogenase activity
At1D1609_31950	COG3842	ATPase activity
At1D1609_31960	COG0395	ABC-type sugar transport system, permease component
At1D1609_31970	COG1175	transmembrane transport
At1D1609_31980	COG1653	transport
At1D1609_32000	COG0673	inositol 2-dehydrogenase activity
At1D1609_32030	COG5001	Diguanylate cyclase
At1D1609_32060	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
At1D1609_32070	COG2894	cell division
At1D1609_32080	COG0850	regulation of cytokinetic process
At1D1609_32090	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
At1D1609_32110	COG2186	Transcriptional regulator
At1D1609_32120	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_32140	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1609_32150	COG1063	alcohol dehydrogenase
At1D1609_32160	COG1312	Catalyzes the dehydration of D-mannonate
At1D1609_32200	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_32210	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1609_32220	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_32240	COG0640	Transcriptional regulator
At1D1609_32250	COG0625	glutathione transferase activity
At1D1609_32260	COG4172	Belongs to the ABC transporter superfamily
At1D1609_32270	COG1921	L-seryl-tRNASec selenium transferase activity
At1D1609_32300	COG3964	amidohydrolase
At1D1609_32320	COG0601	transmembrane transport
At1D1609_32330	COG0747	negative chemotaxis
At1D1609_32340	COG0438	transferase activity, transferring glycosyl groups
At1D1609_32410	COG4989	oxidoreductase activity
At1D1609_32450	COG1653	transport
At1D1609_32460	COG1175	transmembrane transport
At1D1609_32470	COG0395	ABC-type sugar transport system, permease component
At1D1609_32480	COG1501	Belongs to the glycosyl hydrolase 31 family
At1D1609_32500	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_32510	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D1609_32520	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
At1D1609_32530	COG0352	thiamine-phosphate diphosphorylase activity
At1D1609_32540	COG0351	phosphomethylpyrimidine kinase
At1D1609_32550	COG1522	sequence-specific DNA binding
At1D1609_32560	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
At1D1609_32570	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_32600	COG2204	response regulator
At1D1609_32610	COG4191	Histidine kinase
At1D1609_32620	COG1301	dicarboxylic acid transport
At1D1609_32640	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
At1D1609_32650	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_32710	COG1215	transferase activity, transferring glycosyl groups
At1D1609_32730	COG2942	2-epimerase
At1D1609_32860	COG3307	-O-antigen
At1D1609_32870	COG1596	polysaccharide export
At1D1609_32880	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
At1D1609_32910	COG0840	transmembrane signaling receptor activity
At1D1609_32920	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1609_32940	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_32960	COG2094	Belongs to the DNA glycosylase MPG family
At1D1609_32980	COG1609	Transcriptional regulator
At1D1609_32990	COG1653	transport
At1D1609_33020	COG3842	ATPase activity
At1D1609_33040	COG0673	inositol 2-dehydrogenase activity
At1D1609_33050	COG0602	queuosine metabolic process
At1D1609_33060	COG0720	synthase
At1D1609_33070	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
At1D1609_33090	COG0673	inositol 2-dehydrogenase activity
At1D1609_33120	COG0395	ABC-type sugar transport system, permease component
At1D1609_33170	COG0281	malic enzyme
At1D1609_33170	COG0280	phosphate acetyltransferase
At1D1609_33210	COG0765	amino acid transport
At1D1609_33220	COG1126	abc transporter atp-binding protein
At1D1609_33230	COG2079	MmgE PrpD family protein
At1D1609_33260	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_33300	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
At1D1609_33320	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
At1D1609_33330	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
At1D1609_33340	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_33350	COG1129	ABC transporter
At1D1609_33370	COG1473	amidohydrolase
At1D1609_33380	COG0747	negative chemotaxis
At1D1609_33420	COG0601	transmembrane transport
At1D1609_33430	COG0583	DNA-binding transcription factor activity
At1D1609_33440	COG1446	asparaginase
At1D1609_33470	COG0747	negative chemotaxis
At1D1609_33520	COG0601	transmembrane transport
At1D1609_33530	COG2197	response regulator
At1D1609_33540	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
At1D1609_33550	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1609_33580	COG0395	ABC-type sugar transport system, permease component
At1D1609_33590	COG1175	transmembrane transport
At1D1609_33610	COG0673	inositol 2-dehydrogenase activity
At1D1609_33620	COG0673	inositol 2-dehydrogenase activity
At1D1609_33660	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_33670	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
At1D1609_33710	COG1595	DNA-templated transcription, initiation
At1D1609_33720	COG1120	ATPase activity
At1D1609_33730	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_33760	COG2226	methyltransferase
At1D1609_33780	COG1120	ATPase activity
At1D1609_33790	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_33830	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
At1D1609_33880	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_33890	COG0473	3-isopropylmalate dehydrogenase activity
At1D1609_33900	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_33910	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_33980	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_33990	COG4172	Belongs to the ABC transporter superfamily
At1D1609_34000	COG1522	sequence-specific DNA binding
At1D1609_34050	COG0583	DNA-binding transcription factor activity
At1D1609_34080	COG1126	abc transporter atp-binding protein
At1D1609_34100	COG1473	amidohydrolase
At1D1609_34110	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_34120	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_34130	COG1959	2 iron, 2 sulfur cluster binding
At1D1609_34150	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D1609_34160	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_34200	COG1960	acyl-CoA dehydrogenase activity
At1D1609_34250	COG0444	Belongs to the ABC transporter superfamily
At1D1609_34270	COG0667	Aldo Keto reductase
At1D1609_34290	COG0583	DNA-binding transcription factor activity
At1D1609_34310	COG4166	transmembrane transport
At1D1609_34330	COG0747	negative chemotaxis
At1D1609_34340	COG1473	amidohydrolase
At1D1609_34350	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_34390	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_34430	COG4608	Belongs to the ABC transporter superfamily
At1D1609_34440	COG0444	Belongs to the ABC transporter superfamily
At1D1609_34460	COG0601	transmembrane transport
At1D1609_34470	COG2186	Transcriptional regulator
At1D1609_34500	COG0300	oxidoreductase activity
At1D1609_34520	COG3453	Protein conserved in bacteria
At1D1609_34520	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
At1D1609_34530	COG0640	Transcriptional regulator
At1D1609_34550	COG2391	methyltransferase activity
At1D1609_34560	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
At1D1609_34580	COG0022	dehydrogenase e1 component
At1D1609_34600	COG1960	acyl-CoA dehydrogenase activity
At1D1609_34610	COG0183	Belongs to the thiolase family
At1D1609_34630	COG1960	acyl-CoA dehydrogenase activity
At1D1609_34640	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
At1D1609_34680	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
At1D1609_34690	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
At1D1609_34700	COG4952	isomerase
At1D1609_34710	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_34710	COG3347	Dehydrogenase
At1D1609_34720	COG1349	DNA-binding transcription factor activity
At1D1609_34740	COG1129	ABC transporter
At1D1609_34750	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_34760	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_34770	COG3254	rhamnose metabolic process
At1D1609_34800	COG2264	protein methyltransferase activity
At1D1609_34810	COG5001	Diguanylate cyclase
At1D1609_34840	COG4335	DNA alkylation repair
At1D1609_34850	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
At1D1609_34860	COG4208	sulfate ABC transporter
At1D1609_34890	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
At1D1609_34920	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
At1D1609_34940	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
At1D1609_34960	COG1040	competence protein
At1D1609_34970	COG2226	methyltransferase
At1D1609_35000	COG0494	nUDIX hydrolase
At1D1609_35020	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
At1D1609_35030	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
At1D1609_35040	COG0653	protein targeting
At1D1609_35050	COG0697	spore germination
At1D1609_35160	COG2244	polysaccharide biosynthetic process
At1D1609_35200	COG3206	protein involved in exopolysaccharide biosynthesis
At1D1609_35200	COG0489	protein tyrosine kinase activity
At1D1609_35240	COG0438	transferase activity, transferring glycosyl groups
At1D1609_35250	COG0438	transferase activity, transferring glycosyl groups
At1D1609_35280	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
At1D1609_35290	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
At1D1609_35290	COG2273	Hydrolase Family 16
At1D1609_35380	COG1396	sequence-specific DNA binding
At1D1609_35400	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
At1D1609_35410	COG1129	ABC transporter
At1D1609_35420	COG4214	carbohydrate transport
At1D1609_35430	COG4213	ABC transporter substrate-binding protein
At1D1609_35510	COG0625	glutathione transferase activity
At1D1609_35520	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
At1D1609_35530	COG3800	Transcriptional regulator
At1D1609_35530	COG1396	sequence-specific DNA binding
At1D1609_35550	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
At1D1609_35570	COG0300	oxidoreductase activity
At1D1609_35590	COG2096	Adenosyltransferase
At1D1609_35610	COG2086	electron transfer activity
At1D1609_35630	COG1250	3-hydroxyacyl-CoA dehydrogenase
At1D1609_35640	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
At1D1609_35650	COG0165	Argininosuccinate lyase
At1D1609_35720	COG2884	Cell division ATP-binding protein ftsE
At1D1609_35760	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
At1D1609_35780	COG0287	Prephenate dehydrogenase
At1D1609_35790	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
At1D1609_35800	COG2226	methyltransferase
At1D1609_35810	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
At1D1609_35840	COG0227	Belongs to the bacterial ribosomal protein bL28 family
At1D1609_35850	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
At1D1609_35920	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
At1D1609_35930	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
At1D1609_35950	COG4974	Belongs to the 'phage' integrase family
At1D1609_35960	COG0825	malonyl-CoA metabolic process
At1D1609_35970	COG3034	peptidoglycan biosynthetic process
At1D1609_35980	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
At1D1609_35980	COG0425	Belongs to the sulfur carrier protein TusA family
At1D1609_35990	COG0523	cobalamin synthesis protein
At1D1609_36000	COG1686	Belongs to the peptidase S11 family
At1D1609_36010	COG1473	amidohydrolase
At1D1609_36110	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
At1D1609_36110	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
At1D1609_36140	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
At1D1609_36180	COG0798	PFAM Bile acid sodium symporter
At1D1609_36200	COG0431	NADPH-dependent FMN reductase
At1D1609_36250	COG0583	DNA-binding transcription factor activity
At1D1609_36260	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_36300	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
At1D1609_36310	COG0828	Belongs to the bacterial ribosomal protein bS21 family
At1D1609_36350	COG3501	Rhs element vgr protein
At1D1609_36380	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
At1D1609_36430	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
At1D1609_36490	COG1431	PFAM Stem cell self-renewal protein Piwi
At1D1609_36670	COG0232	Belongs to the dGTPase family. Type 2 subfamily
At1D1609_36700	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
At1D1609_36720	COG1059	Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine 7-oxoG) from DNA. Also nicks DNA at apurinic apyrimidinic sites (AP sites)
At1D1609_36730	COG2963	transposase activity
At1D1609_36740	COG2801	Transposase and inactivated derivatives
At1D1609_36750	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
At1D1609_36850	COG4953	penicillin-binding protein 1C
At1D1609_36860	COG2373	Large extracellular alpha-helical protein
At1D1609_36870	COG2835	tetraacyldisaccharide 4'-kinase activity
At1D1609_36920	COG0482	sulfurtransferase activity
At1D1609_36950	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
At1D1609_36980	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
At1D1609_36990	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
At1D1609_37000	COG0037	tRNA processing
At1D1609_37020	COG2885	chlorophyll binding
At1D1609_37030	COG0823	Involved in the tonB-independent uptake of proteins
At1D1609_37070	COG0824	Thioesterase
At1D1609_37090	COG0494	nUDIX hydrolase
At1D1609_37120	COG2255	four-way junction helicase activity
At1D1609_37150	COG0632	four-way junction helicase activity
At1D1609_37160	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
At1D1609_37170	COG0840	transmembrane signaling receptor activity
At1D1609_37180	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_37190	COG0217	transcriptional regulatory protein
At1D1609_37220	COG1692	metallophosphoesterase
At1D1609_37240	COG1253	flavin adenine dinucleotide binding
At1D1609_37300	COG0126	phosphoglycerate kinase activity
At1D1609_37310	COG3588	fructose-bisphosphate aldolase
At1D1609_37330	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_37350	COG1414	Transcriptional regulator
At1D1609_37380	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_37480	COG0254	rRNA binding
At1D1609_37490	COG1132	(ABC) transporter
At1D1609_37530	COG0483	inositol monophosphate 1-phosphatase activity
At1D1609_37590	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
At1D1609_37600	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
At1D1609_37610	COG0257	Belongs to the bacterial ribosomal protein bL36 family
At1D1609_37620	COG0457	Tetratricopeptide repeat
At1D1609_37640	COG3750	Belongs to the UPF0335 family
At1D1609_37680	COG0469	pyruvate kinase activity
At1D1609_37690	COG3108	Peptidase M15
At1D1609_37700	COG2204	response regulator
At1D1609_37710	COG1164	Oligoendopeptidase f
At1D1609_37720	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
At1D1609_37740	COG5310	Homospermidine synthase
At1D1609_37760	COG0737	Belongs to the 5'-nucleotidase family
At1D1609_37770	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
At1D1609_37780	COG0330	HflC and HflK could
At1D1609_37830	COG1210	Utp--glucose-1-phosphate uridylyltransferase
At1D1609_37840	COG2951	lytic endotransglycosylase activity
At1D1609_37870	COG2205	protein histidine kinase activity
At1D1609_37890	COG0067	glutamate synthase
At1D1609_37890	COG0070	glutamate synthase
At1D1609_37890	COG0069	glutamate synthase activity
At1D1609_37920	COG2205	protein histidine kinase activity
At1D1609_37930	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
At1D1609_37940	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
At1D1609_37960	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
At1D1609_37980	COG0252	asparaginase activity
At1D1609_38000	COG1027	Aspartate ammonia-lyase
At1D1609_38010	COG2186	Transcriptional regulator
At1D1609_38080	COG0395	ABC-type sugar transport system, permease component
At1D1609_38090	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1609_38120	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_38130	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_38150	COG2267	carboxylic ester hydrolase activity
At1D1609_38200	COG4176	ABC-type proline glycine betaine transport system permease component
At1D1609_38210	COG0517	IMP dehydrogenase activity
At1D1609_38210	COG4175	Glycine betaine
At1D1609_38220	COG2986	histidine ammonia-lyase
At1D1609_38250	COG0174	glutamine synthetase
At1D1609_38260	COG0069	glutamate synthase activity
At1D1609_38270	COG2218	PFAM glutamate synthase alpha subunit domain protein
At1D1609_38280	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
At1D1609_38300	COG4977	sequence-specific DNA binding
At1D1609_38310	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_38320	COG4311	Sarcosine oxidase, delta subunit
At1D1609_38330	COG0404	The glycine cleavage system catalyzes the degradation of glycine
At1D1609_38330	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D1609_38350	COG2186	Transcriptional regulator
At1D1609_38370	COG0765	amino acid transport
At1D1609_38390	COG3842	ATPase activity
At1D1609_38410	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1609_38420	COG1177	transmembrane transport
At1D1609_38440	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D1609_38460	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_38470	COG4172	Belongs to the ABC transporter superfamily
At1D1609_38490	COG0601	transmembrane transport
At1D1609_38500	COG0747	negative chemotaxis
At1D1609_38520	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
At1D1609_38530	COG1454	alcohol dehydrogenase
At1D1609_38540	COG2186	Transcriptional regulator
At1D1609_38570	COG1607	acyl-coa hydrolase
At1D1609_38610	COG2308	Evidence 4 Homologs of previously reported genes of
At1D1609_38610	COG2307	Protein conserved in bacteria
At1D1609_38640	COG0488	(ABC) transporter
At1D1609_38650	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D1609_38660	COG2186	Transcriptional regulator
At1D1609_38690	COG1175	transmembrane transport
At1D1609_38700	COG0395	ABC-type sugar transport system, permease component
At1D1609_38720	COG3842	ATPase activity
At1D1609_38760	COG2171	N-acyltransferase activity
At1D1609_38770	COG1304	FMN binding
At1D1609_38800	COG1063	alcohol dehydrogenase
At1D1609_38810	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
At1D1609_38820	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1609_38840	COG0765	amino acid transport
At1D1609_38850	COG0765	amino acid transport
At1D1609_38860	COG4221	oxidoreductase activity
At1D1609_38870	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D1609_38880	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_38890	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1609_38920	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
At1D1609_38950	COG0697	spore germination
At1D1609_38960	COG0697	spore germination
At1D1609_38970	COG0511	ligase activity, forming carbon-carbon bonds
At1D1609_38980	COG0439	Biotin carboxylase
At1D1609_39000	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
At1D1609_39010	COG1984	allophanate hydrolase subunit 2
At1D1609_39020	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
At1D1609_39030	COG3842	ATPase activity
At1D1609_39050	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
At1D1609_39060	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1609_39080	COG4221	oxidoreductase activity
At1D1609_39120	COG1070	Carbohydrate kinase
At1D1609_39130	COG1830	Aldolase
At1D1609_39140	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
At1D1609_39150	COG0667	Aldo Keto reductase
At1D1609_39170	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_39180	COG1129	ABC transporter
At1D1609_39210	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
At1D1609_39230	COG4172	Belongs to the ABC transporter superfamily
At1D1609_39240	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_39250	COG0601	transmembrane transport
At1D1609_39260	COG4166	transmembrane transport
At1D1609_39270	COG4974	Belongs to the 'phage' integrase family
At1D1609_39400	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
At1D1609_39430	COG0328	RNA-DNA hybrid ribonuclease activity
At1D1609_39920	COG0071	Belongs to the small heat shock protein (HSP20) family
At1D1609_39950	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
At1D1609_39980	COG0395	ABC-type sugar transport system, permease component
At1D1609_40000	COG3842	ATPase activity
At1D1609_40010	COG3842	ATPase activity
At1D1609_40040	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
At1D1609_40040	COG1648	precorrin-2 dehydrogenase activity
At1D1609_40050	COG0243	molybdopterin cofactor binding
At1D1609_40080	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
At1D1609_40090	COG1116	anion transmembrane transporter activity
At1D1609_40100	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_40110	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D1609_40120	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D1609_40130	COG3707	response regulator
At1D1609_40140	COG1802	Transcriptional regulator
At1D1609_40150	COG1914	H( )-stimulated, divalent metal cation uptake system
At1D1609_40160	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
At1D1609_40170	COG4336	lyase activity
At1D1609_40180	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
At1D1609_40190	COG4770	biotin carboxylase activity
At1D1609_40200	COG0366	Alpha amylase catalytic
At1D1609_40210	COG0789	Transcriptional regulator
At1D1609_40220	COG4771	TonB-dependent receptor
At1D1609_40270	COG1414	Transcriptional regulator
At1D1609_40280	COG1475	DNA binding
At1D1609_40290	COG1192	Involved in chromosome partitioning
At1D1609_40350	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
At1D1609_40370	COG2986	histidine ammonia-lyase
At1D1609_40380	COG1228	amidohydrolase
At1D1609_40390	COG0402	S-adenosylhomocysteine deaminase activity
At1D1609_40450	COG1120	ATPase activity
At1D1609_40460	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_40470	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_40480	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
At1D1609_40490	COG1629	transport
At1D1609_40490	COG4774	siderophore transport
At1D1609_40590	COG2226	methyltransferase
At1D1609_40660	COG2091	lysine biosynthetic process via aminoadipic acid
At1D1609_40670	COG1959	2 iron, 2 sulfur cluster binding
At1D1609_40730	COG3485	protocatechuate 3,4-dioxygenase
At1D1609_40740	COG3971	2-oxopent-4-enoate hydratase activity
At1D1609_40770	COG1309	transcriptional regulator
At1D1609_40780	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_40840	COG1846	Transcriptional regulator
At1D1609_40850	COG0583	DNA-binding transcription factor activity
At1D1609_40860	COG2828	Protein conserved in bacteria
At1D1609_40890	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_40900	COG0840	transmembrane signaling receptor activity
At1D1609_40910	COG0431	NADPH-dependent FMN reductase
At1D1609_41020	COG0583	DNA-binding transcription factor activity
At1D1609_41030	COG0346	lactoylglutathione lyase activity
At1D1609_41060	COG1574	metal-dependent hydrolase with the TIM-barrel fold
At1D1609_41110	COG0583	DNA-binding transcription factor activity
At1D1609_41120	COG0477	Major facilitator Superfamily
At1D1609_41140	COG3850	Histidine kinase
At1D1609_41140	COG5002	protein histidine kinase activity
At1D1609_41150	COG0745	RESPONSE REGULATOR receiver
At1D1609_41160	COG0671	phosphoesterase, PA-phosphatase related
At1D1609_41260	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
At1D1609_41280	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
At1D1609_41290	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
At1D1609_41340	COG0697	spore germination
At1D1609_41350	COG0673	inositol 2-dehydrogenase activity
At1D1609_41390	COG0477	Major facilitator Superfamily
At1D1609_41400	COG0642	Histidine kinase
At1D1609_41410	COG0745	RESPONSE REGULATOR receiver
At1D1609_41420	COG2194	sulfuric ester hydrolase activity
At1D1609_41440	COG0583	DNA-binding transcription factor activity
At1D1609_41450	COG4774	siderophore transport
At1D1609_41480	COG1120	ATPase activity
At1D1609_41500	COG3474	cytochrome
At1D1609_41510	COG2137	regulation of response to DNA damage stimulus
At1D1609_41520	COG3386	PFAM SMP-30 Gluconolaconase
At1D1609_41540	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_41550	COG1129	ABC transporter
At1D1609_41560	COG1879	ABC-type sugar transport system periplasmic component
At1D1609_41570	COG4585	Histidine kinase
At1D1609_41580	COG2197	response regulator
At1D1609_41600	COG2133	pyrroloquinoline quinone binding
At1D1609_41620	COG0500	methyltransferase
At1D1609_41660	COG4175	Glycine betaine
At1D1609_41660	COG3448	diguanylate cyclase activity
At1D1609_41670	COG4176	ABC-type proline glycine betaine transport system permease component
At1D1609_41690	COG4191	Histidine kinase
At1D1609_41690	COG0784	Response regulator, receiver
At1D1609_41710	COG3206	protein involved in exopolysaccharide biosynthesis
At1D1609_41710	COG0489	protein tyrosine kinase activity
At1D1609_41720	COG1210	Utp--glucose-1-phosphate uridylyltransferase
At1D1609_41730	COG1215	transferase activity, transferring glycosyl groups
At1D1609_41740	COG1215	transferase activity, transferring glycosyl groups
At1D1609_41750	COG1215	transferase activity, transferring glycosyl groups
At1D1609_41760	COG0438	transferase activity, transferring glycosyl groups
At1D1609_41770	COG2273	Hydrolase Family 16
At1D1609_41780	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
At1D1609_41790	COG2244	polysaccharide biosynthetic process
At1D1609_41800	COG0463	Glycosyl transferase, family 2
At1D1609_41810	COG2327	Polysaccharide pyruvyl transferase
At1D1609_41820	COG1215	transferase activity, transferring glycosyl groups
At1D1609_41860	COG0828	Belongs to the bacterial ribosomal protein bS21 family
At1D1609_41870	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_41900	COG0404	The glycine cleavage system catalyzes the degradation of glycine
At1D1609_41900	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D1609_41950	COG0033	Phosphoglucomutase
At1D1609_41960	COG0297	glycogen (starch) synthase activity
At1D1609_41970	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
At1D1609_41980	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
At1D1609_41990	COG0058	SHG alpha-glucan phosphorylase activity
At1D1609_42010	COG1794	racemase activity, acting on amino acids and derivatives
At1D1609_42020	COG1522	sequence-specific DNA binding
At1D1609_42040	COG2084	Dehydrogenase
At1D1609_42050	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_42060	COG1063	alcohol dehydrogenase
At1D1609_42080	COG4988	ABC transporter
At1D1609_42090	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
At1D1609_42110	COG1294	oxidase, subunit
At1D1609_42170	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
At1D1609_42180	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
At1D1609_42230	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
At1D1609_42240	COG0539	negative regulation of cytoplasmic translation
At1D1609_42300	COG4221	oxidoreductase activity
At1D1609_42310	COG0006	proline dipeptidase activity
At1D1609_42320	COG0747	negative chemotaxis
At1D1609_42330	COG0601	transmembrane transport
At1D1609_42340	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_42350	COG0444	Belongs to the ABC transporter superfamily
At1D1609_42360	COG4608	Belongs to the ABC transporter superfamily
At1D1609_42370	COG0246	Mannitol dehydrogenase
At1D1609_42400	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_42440	COG0410	ABC transporter
At1D1609_42450	COG0559	Belongs to the binding-protein-dependent transport system permease family
At1D1609_42490	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
At1D1609_42500	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_42520	COG4993	Dehydrogenase
At1D1609_42530	COG3685	Protein conserved in bacteria
At1D1609_42540	COG1285	pathogenesis
At1D1609_42550	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_42590	COG0693	protein deglycase activity
At1D1609_42630	COG0189	ligase activity
At1D1609_42640	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1609_42650	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
At1D1609_42670	COG0435	Glutathione S-transferase
At1D1609_42680	COG0583	DNA-binding transcription factor activity
At1D1609_42690	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_42700	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D1609_42710	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_42720	COG1116	anion transmembrane transporter activity
At1D1609_42740	COG1522	sequence-specific DNA binding
At1D1609_42770	COG0784	Response regulator, receiver
At1D1609_42810	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
At1D1609_42840	COG0019	diaminopimelate decarboxylase activity
At1D1609_42870	COG0527	aspartate kinase activity
At1D1609_42890	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
At1D1609_42900	COG2890	protein-(glutamine-N5) methyltransferase activity
At1D1609_42920	COG0542	response to heat
At1D1609_42930	COG0739	heme binding
At1D1609_42930	COG1196	nuclear chromosome segregation
At1D1609_42930	COG0741	lytic transglycosylase activity
At1D1609_42960	COG2801	Transposase and inactivated derivatives
At1D1609_43000	COG3293	Transposase
At1D1609_43040	COG0583	DNA-binding transcription factor activity
At1D1609_43060	COG1609	Transcriptional regulator
At1D1609_43200	COG3501	Rhs element vgr protein
At1D1609_43250	COG2801	Transposase and inactivated derivatives
At1D1609_43270	COG1609	Transcriptional regulator
At1D1609_43320	COG0673	inositol 2-dehydrogenase activity
At1D1609_43330	COG0596	Alpha beta hydrolase
At1D1609_43390	COG1454	alcohol dehydrogenase
At1D1609_43420	COG0411	ABC transporter
At1D1609_43480	COG0583	DNA-binding transcription factor activity
At1D1609_43490	COG3842	ATPase activity
At1D1609_43510	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_43530	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1609_43540	COG4208	sulfate ABC transporter
At1D1609_43640	COG4191	Histidine kinase
At1D1609_43640	COG0784	Response regulator, receiver
At1D1609_43650	COG2202	Pas domain
At1D1609_43650	COG3920	Histidine kinase
At1D1609_43660	COG0784	Response regulator, receiver
At1D1609_43670	COG4191	Histidine kinase
At1D1609_43670	COG0784	Response regulator, receiver
At1D1609_43700	COG0071	Belongs to the small heat shock protein (HSP20) family
At1D1609_43720	COG0583	DNA-binding transcription factor activity
At1D1609_43730	COG0667	Aldo Keto reductase
At1D1609_43740	COG1609	Transcriptional regulator
At1D1609_43750	COG0673	inositol 2-dehydrogenase activity
At1D1609_43770	COG0673	inositol 2-dehydrogenase activity
At1D1609_43790	COG4221	oxidoreductase activity
At1D1609_43820	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
At1D1609_43830	COG0297	glycogen (starch) synthase activity
At1D1609_43910	COG0395	ABC-type sugar transport system, permease component
At1D1609_43940	COG4943	cyclic-guanylate-specific phosphodiesterase activity
At1D1609_43970	COG2376	Dihydroxyacetone kinase
At1D1609_43980	COG1522	sequence-specific DNA binding
At1D1609_44020	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
At1D1609_44030	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1609_44080	COG0583	DNA-binding transcription factor activity
At1D1609_44090	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_44120	COG3842	ATPase activity
At1D1609_44130	COG1177	transmembrane transport
At1D1609_44190	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
At1D1609_44220	COG3842	ATPase activity
At1D1609_44230	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1609_44240	COG1177	transmembrane transport
At1D1609_44250	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
At1D1609_44270	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
At1D1609_44290	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
At1D1609_44300	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
At1D1609_44310	COG1845	cytochrome c oxidase, subunit III
At1D1609_44370	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D1609_44370	COG0404	The glycine cleavage system catalyzes the degradation of glycine
At1D1609_44390	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
At1D1609_44420	COG1309	transcriptional regulator
At1D1609_44440	COG1063	alcohol dehydrogenase
At1D1609_44460	COG1879	ABC-type sugar transport system periplasmic component
At1D1609_44480	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_44720	COG3501	Rhs element vgr protein
At1D1609_44760	COG3300	MHYT domain
At1D1609_44760	COG5001	Diguanylate cyclase
At1D1609_44770	COG0483	inositol monophosphate 1-phosphatase activity
At1D1609_44820	COG3842	ATPase activity
At1D1609_44830	COG0395	ABC-type sugar transport system, permease component
At1D1609_44840	COG1175	transmembrane transport
At1D1609_44850	COG1653	transport
At1D1609_44870	COG0673	inositol 2-dehydrogenase activity
At1D1609_44880	COG1609	Transcriptional regulator
At1D1609_44910	COG1879	ABC-type sugar transport system periplasmic component
At1D1609_44920	COG1129	ABC transporter
At1D1609_44930	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_44940	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_44950	COG1609	Transcriptional regulator
At1D1609_44970	COG0673	inositol 2-dehydrogenase activity
At1D1609_45090	COG0714	Associated with various cellular activities
At1D1609_45100	COG3256	nitric oxide reductase
At1D1609_45130	COG1845	cytochrome c oxidase, subunit III
At1D1609_45160	COG0163	prenyltransferase activity
At1D1609_45170	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
At1D1609_45180	COG3189	MarR family transcriptional regulator
At1D1609_45250	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
At1D1609_45270	COG4459	periplasmic nitrate reductase
At1D1609_45300	COG0243	molybdopterin cofactor binding
At1D1609_45320	COG3005	denitrification pathway
At1D1609_45360	COG2375	cellular response to nickel ion
At1D1609_45380	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_45390	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_45430	COG4774	siderophore transport
At1D1609_45430	COG1629	transport
At1D1609_45440	COG1960	acyl-CoA dehydrogenase activity
At1D1609_45450	COG0583	DNA-binding transcription factor activity
At1D1609_45460	COG1609	Transcriptional regulator
At1D1609_45480	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1609_45500	COG3842	ATPase activity
At1D1609_45520	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
At1D1609_45530	COG1473	amidohydrolase
At1D1609_45560	COG0747	negative chemotaxis
At1D1609_45570	COG0601	transmembrane transport
At1D1609_45590	COG0444	Belongs to the ABC transporter superfamily
At1D1609_45610	COG0583	DNA-binding transcription factor activity
At1D1609_45620	COG0747	negative chemotaxis
At1D1609_45640	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_45650	COG0154	amidase activity
At1D1609_45660	COG0693	protein deglycase activity
At1D1609_45680	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_45690	COG0601	transmembrane transport
At1D1609_45710	COG1473	amidohydrolase
At1D1609_45720	COG4172	Belongs to the ABC transporter superfamily
At1D1609_45730	COG2390	Transcriptional regulator
At1D1609_45750	COG1175	transmembrane transport
At1D1609_45760	COG0395	ABC-type sugar transport system, permease component
At1D1609_45800	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
At1D1609_45860	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
At1D1609_45890	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
At1D1609_45900	COG1414	Transcriptional regulator
At1D1609_45910	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_45930	COG1108	ABC-type Mn2 Zn2 transport systems permease components
At1D1609_45940	COG1108	ABC-type Mn2 Zn2 transport systems permease components
At1D1609_45950	COG1121	(ABC) transporter
At1D1609_45960	COG0803	Belongs to the bacterial solute-binding protein 9 family
At1D1609_45980	COG1752	Esterase of the alpha-beta hydrolase superfamily
At1D1609_45990	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
At1D1609_46000	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
At1D1609_46010	COG0471	metal ion transport
At1D1609_46010	COG3273	potassium ion transport
At1D1609_46020	COG2827	Endonuclease containing a URI domain
At1D1609_46030	COG1253	flavin adenine dinucleotide binding
At1D1609_46040	COG1309	transcriptional regulator
At1D1609_46070	COG1609	Transcriptional regulator
At1D1609_46080	COG1070	Carbohydrate kinase
At1D1609_46090	COG2115	Belongs to the xylose isomerase family
At1D1609_46130	COG0778	Nitroreductase
At1D1609_46140	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
At1D1609_46150	COG2011	ABC-type metal ion transport system permease component
At1D1609_46170	COG5001	Diguanylate cyclase
At1D1609_46170	COG3300	MHYT domain
At1D1609_46220	COG0800	Aldolase
At1D1609_46260	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
At1D1609_46330	COG0523	cobalamin synthesis protein
At1D1609_46350	COG1846	Transcriptional regulator
At1D1609_46360	COG1609	Transcriptional regulator
At1D1609_46370	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D1609_46390	COG3718	enzyme involved in inositol metabolism
At1D1609_46410	COG3962	Belongs to the TPP enzyme family
At1D1609_46420	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_46460	COG0559	Belongs to the binding-protein-dependent transport system permease family
At1D1609_46480	COG0683	leucine binding
At1D1609_46510	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_46530	COG0747	negative chemotaxis
At1D1609_46540	COG4172	Belongs to the ABC transporter superfamily
At1D1609_46570	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
At1D1609_46580	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
At1D1609_46590	COG1126	abc transporter atp-binding protein
At1D1609_46600	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1609_46610	COG0765	amino acid transport
At1D1609_46620	COG0765	amino acid transport
At1D1609_46640	COG3485	protocatechuate 3,4-dioxygenase
At1D1609_46650	COG3485	protocatechuate 3,4-dioxygenase
At1D1609_46660	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
At1D1609_46680	COG0583	DNA-binding transcription factor activity
At1D1609_46700	COG2801	Transposase and inactivated derivatives
At1D1609_46730	COG1414	Transcriptional regulator
At1D1609_46750	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
At1D1609_46760	COG0183	Belongs to the thiolase family
At1D1609_46770	COG1609	Transcriptional regulator
At1D1609_46800	COG1082	Xylose isomerase domain protein TIM barrel
At1D1609_46810	COG0673	inositol 2-dehydrogenase activity
At1D1609_46830	COG1609	Transcriptional regulator
At1D1609_46840	COG0395	ABC-type sugar transport system, permease component
At1D1609_46850	COG1175	transmembrane transport
At1D1609_46860	COG3842	ATPase activity
At1D1609_46880	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
At1D1609_46920	COG2814	Major facilitator Superfamily
At1D1609_46930	COG4774	siderophore transport
At1D1609_46940	COG3712	iron ion homeostasis
At1D1609_46960	COG1940	carbohydrate kinase activity
At1D1609_46980	COG3842	ATPase activity
At1D1609_46990	COG4149	molybdate abc transporter
At1D1609_47010	COG0584	glycerophosphoryl diester phosphodiesterase
At1D1609_47020	COG0483	inositol monophosphate 1-phosphatase activity
At1D1609_47030	COG0300	oxidoreductase activity
At1D1609_47110	COG3210	domain, Protein
At1D1609_47110	COG3210	domain, Protein
At1D1609_47150	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
At1D1609_47200	COG0385	Bile acid
At1D1609_47210	COG0667	Aldo Keto reductase
At1D1609_47220	COG0583	DNA-binding transcription factor activity
At1D1609_47240	COG2942	2-epimerase
At1D1609_47250	COG1132	(ABC) transporter
At1D1609_47270	COG0438	transferase activity, transferring glycosyl groups
At1D1609_47330	COG2801	Transposase and inactivated derivatives
At1D1609_47410	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_47420	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_47430	COG1120	ATPase activity
At1D1609_47440	COG4774	siderophore transport
At1D1609_47450	COG0210	DNA helicase
At1D1609_47460	COG4608	Belongs to the ABC transporter superfamily
At1D1609_47470	COG0444	Belongs to the ABC transporter superfamily
At1D1609_47480	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_47490	COG0601	transmembrane transport
At1D1609_47500	COG2186	Transcriptional regulator
At1D1609_47520	COG0747	negative chemotaxis
At1D1609_47540	COG3300	MHYT domain
At1D1609_47540	COG5001	Diguanylate cyclase
At1D1609_47550	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_47570	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
At1D1609_47590	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
At1D1609_47600	COG0306	phosphate transporter
At1D1609_47610	COG1392	Phosphate transport regulator
At1D1609_47650	COG1566	PFAM secretion protein HlyD family protein
At1D1609_47660	COG0745	RESPONSE REGULATOR receiver
At1D1609_47670	COG2205	protein histidine kinase activity
At1D1609_47700	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
At1D1609_47720	COG2207	Transcriptional regulator
At1D1609_47730	COG4774	siderophore transport
At1D1609_47750	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_47760	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_47770	COG1120	ATPase activity
At1D1609_47860	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_47890	COG3119	arylsulfatase activity
At1D1609_47930	COG4423	Transcription factor
At1D1609_47980	COG1486	melibiose metabolic process
At1D1609_47990	COG0747	negative chemotaxis
At1D1609_48000	COG0601	transmembrane transport
At1D1609_48010	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_48020	COG4172	Belongs to the ABC transporter superfamily
At1D1609_48030	COG1486	melibiose metabolic process
At1D1609_48040	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_48050	COG0842	Transport permease protein
At1D1609_48050	COG1129	ABC transporter
At1D1609_48060	COG0842	Transport permease protein
At1D1609_48090	COG0784	Response regulator, receiver
At1D1609_48100	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
At1D1609_48120	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_48130	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
At1D1609_48160	COG0765	amino acid transport
At1D1609_48180	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_48200	COG3938	Belongs to the proline racemase family
At1D1609_48230	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1609_48250	COG0765	amino acid transport
At1D1609_48270	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D1609_48300	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D1609_48340	COG3383	formate dehydrogenase (NAD+) activity
At1D1609_48370	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_48400	COG0747	negative chemotaxis
At1D1609_48410	COG0601	transmembrane transport
At1D1609_48420	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_48430	COG4172	Belongs to the ABC transporter superfamily
At1D1609_48440	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1609_48460	COG2186	Transcriptional regulator
At1D1609_48470	COG0747	negative chemotaxis
At1D1609_48480	COG0601	transmembrane transport
At1D1609_48500	COG0405	Gamma-glutamyltransferase
At1D1609_48520	COG0483	inositol monophosphate 1-phosphatase activity
At1D1609_48540	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
At1D1609_48590	COG3237	CsbD-like
At1D1609_48620	COG3181	Tripartite tricarboxylate transporter family receptor
At1D1609_48630	COG5265	(ABC) transporter
At1D1609_48650	COG0488	(ABC) transporter
At1D1609_48700	COG1049	propionate catabolic process, 2-methylcitrate cycle
At1D1609_48710	COG0110	maltose O-acetyltransferase activity
At1D1609_48750	COG1129	ABC transporter
At1D1609_48760	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_48770	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_48780	COG1082	Xylose isomerase domain protein TIM barrel
At1D1609_48800	COG1082	Xylose isomerase domain protein TIM barrel
At1D1609_48820	COG1126	abc transporter atp-binding protein
At1D1609_48830	COG0765	amino acid transport
At1D1609_48840	COG0765	amino acid transport
At1D1609_48850	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1609_48860	COG3608	succinylglutamate desuccinylase aspartoacylase
At1D1609_48870	COG0006	proline dipeptidase activity
At1D1609_48880	COG2423	ornithine cyclodeaminase activity
At1D1609_48890	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
At1D1609_48900	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D1609_48910	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
At1D1609_48920	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_48930	COG1522	sequence-specific DNA binding
At1D1609_48940	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
At1D1609_48950	COG2814	Major facilitator Superfamily
At1D1609_48970	COG4178	(ABC) transporter
At1D1609_49020	COG0640	Transcriptional regulator
At1D1609_49170	COG2963	transposase activity
At1D1609_49180	COG2801	Transposase and inactivated derivatives
At1D1609_49210	COG1309	transcriptional regulator
At1D1609_49300	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_49310	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_49340	COG2204	response regulator
At1D1609_49340	COG5564	TIM-barrel signal transduction protein
At1D1609_49370	COG5564	TIM-barrel signal transduction protein
At1D1609_49380	COG1053	succinate dehydrogenase
At1D1609_49420	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
At1D1609_49430	COG0626	cystathionine gamma-synthase activity
At1D1609_49460	COG4215	(ABC) transporter
At1D1609_49480	COG4598	ABC transporter
At1D1609_49490	COG0583	DNA-binding transcription factor activity
At1D1609_49500	COG1522	sequence-specific DNA binding
At1D1609_49510	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
At1D1609_49540	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_49560	COG1126	abc transporter atp-binding protein
At1D1609_49570	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
At1D1609_49590	COG0765	amino acid transport
At1D1609_49650	COG0626	cystathionine gamma-synthase activity
At1D1609_49680	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1609_49720	COG1473	amidohydrolase
At1D1609_49730	COG0626	cystathionine gamma-synthase activity
At1D1609_49770	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_49780	COG0587	DNA-directed DNA polymerase activity
At1D1609_49830	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_49860	COG1129	ABC transporter
At1D1609_49870	COG4211	Belongs to the binding-protein-dependent transport system permease family
At1D1609_49880	COG1082	Xylose isomerase domain protein TIM barrel
At1D1609_49890	COG0673	inositol 2-dehydrogenase activity
At1D1609_49910	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_49920	COG3962	Belongs to the TPP enzyme family
At1D1609_49940	COG3718	enzyme involved in inositol metabolism
At1D1609_49950	COG1942	4-Oxalocrotonate Tautomerase
At1D1609_49960	COG1737	Transcriptional regulator
At1D1609_49980	COG0673	inositol 2-dehydrogenase activity
At1D1609_50000	COG0673	inositol 2-dehydrogenase activity
At1D1609_50010	COG1609	Transcriptional regulator
At1D1609_50020	COG0583	DNA-binding transcription factor activity
At1D1609_50030	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_50040	COG3959	Transketolase, thiamine diphosphate binding domain
At1D1609_50050	COG3958	Transketolase
At1D1609_50060	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_50070	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_50080	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1609_50090	COG1129	ABC transporter
At1D1609_50100	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_50110	COG1879	ABC-type sugar transport system periplasmic component
At1D1609_50120	COG3618	amidohydrolase
At1D1609_50150	COG2963	transposase activity
At1D1609_50180	COG0277	FAD linked oxidase domain protein
At1D1609_50180	COG0247	lactate metabolic process
At1D1609_50370	COG2801	Transposase and inactivated derivatives
At1D1609_50400	COG0583	DNA-binding transcription factor activity
At1D1609_50420	COG1609	Transcriptional regulator
At1D1609_50490	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
At1D1609_50520	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
At1D1609_50530	COG0583	DNA-binding transcription factor activity
At1D1609_50570	COG1132	(ABC) transporter
At1D1609_50720	COG3501	Rhs element vgr protein
At1D1609_50760	COG3209	COG3209 Rhs family protein
At1D1609_50760	COG4104	PAAR repeat-containing protein
At1D1609_50810	COG4974	Belongs to the 'phage' integrase family
At1D1609_50870	COG1132	(ABC) transporter
At1D1609_50930	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
At1D1609_50930	COG0456	acetyltransferase
At1D1609_50980	COG1192	Involved in chromosome partitioning
At1D1609_50990	COG1475	DNA binding
At1D1609_51000	COG0640	Transcriptional regulator
At1D1609_51010	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
At1D1609_51050	COG4644	lycopene metabolic process
At1D1609_51180	COG4372	Transposase
At1D1609_51190	COG4372	Transposase
At1D1609_51200	COG3436	PFAM IS66 Orf2 family protein
At1D1609_51210	COG2963	transposase activity
At1D1609_51220	COG3547	Transposase (IS116 IS110 IS902 family)
At1D1609_51230	COG2433	Pfam Transposase IS66
At1D1609_51250	COG4974	Belongs to the 'phage' integrase family
At1D1609_51260	COG4974	Belongs to the 'phage' integrase family
At1D1609_51270	COG4974	Belongs to the 'phage' integrase family
At1D1609_51430	COG1278	Cold shock
At1D1609_51510	COG0546	phosphoglycolate phosphatase activity
At1D1609_51680	COG4372	Transposase
At1D1609_51720	COG2222	sugar isomerase
At1D1609_51740	COG0006	proline dipeptidase activity
At1D1609_51930	COG4172	Belongs to the ABC transporter superfamily
At1D1609_51940	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_51950	COG0601	transmembrane transport
At1D1609_52110	COG1177	transmembrane transport
At1D1609_52120	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1609_52150	COG0840	transmembrane signaling receptor activity
At1D1609_52150	COG2972	Histidine kinase
At1D1609_52180	COG3842	ATPase activity
At1D1609_52190	COG0006	proline dipeptidase activity
At1D1609_52230	COG0300	oxidoreductase activity
At1D1609_52250	COG0129	dihydroxy-acid dehydratase activity
At1D1609_52260	COG0667	Aldo Keto reductase
At1D1609_52280	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_52310	COG0601	transmembrane transport
At1D1609_52320	COG4172	Belongs to the ABC transporter superfamily
At1D1609_52330	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_52420	COG4172	Belongs to the ABC transporter superfamily
At1D1609_52470	COG3701	Conjugal transfer protein
At1D1609_52480	COG3846	protein secretion by the type IV secretion system
At1D1609_52500	COG5314	conjugation
At1D1609_52510	COG3451	type IV secretory pathway VirB4
At1D1609_52540	COG4962	Type ii secretion system protein e
At1D1609_52560	COG1192	Involved in chromosome partitioning
At1D1609_52570	COG1475	DNA binding
At1D1609_52580	COG1414	Transcriptional regulator
At1D1609_52590	COG2963	transposase activity
At1D1609_52610	COG2203	Gaf domain
At1D1609_52610	COG3706	GGDEF domain
At1D1609_52610	COG4251	negative regulation of phosphorylation
At1D1609_52610	COG5001	Diguanylate cyclase
At1D1609_52630	COG1278	Cold shock
At1D1609_52760	COG0840	transmembrane signaling receptor activity
At1D1609_52780	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
At1D1609_52810	COG1175	transmembrane transport
At1D1609_52830	COG3842	ATPase activity
At1D1609_52850	COG2390	Transcriptional regulator
At1D1609_52920	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
At1D1609_52930	COG0583	DNA-binding transcription factor activity
At1D1609_52940	COG0346	lactoylglutathione lyase activity
At1D1609_52970	COG1574	metal-dependent hydrolase with the TIM-barrel fold
At1D1609_53060	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_53070	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_53110	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
At1D1609_53120	COG2086	electron transfer activity
At1D1609_53130	COG1396	sequence-specific DNA binding
At1D1609_53150	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
At1D1609_53190	COG0517	IMP dehydrogenase activity
At1D1609_53190	COG4175	Glycine betaine
At1D1609_53200	COG4176	ABC-type proline glycine betaine transport system permease component
At1D1609_53240	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
At1D1609_53250	COG4638	Rieske (2fe-2S)
At1D1609_53320	COG4175	Glycine betaine
At1D1609_53320	COG3448	diguanylate cyclase activity
At1D1609_53330	COG4176	ABC-type proline glycine betaine transport system permease component
At1D1609_53370	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D1609_53370	COG1902	pentaerythritol trinitrate reductase activity
At1D1609_53390	COG2086	electron transfer activity
At1D1609_53400	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
At1D1609_53410	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
At1D1609_53420	COG3791	Glutathione-dependent formaldehyde-activating
At1D1609_53450	COG4521	taurine ABC transporter
At1D1609_53460	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_53480	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_53500	COG0583	DNA-binding transcription factor activity
At1D1609_53520	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
At1D1609_53610	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_53620	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_53640	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
At1D1609_53700	COG3485	protocatechuate 3,4-dioxygenase
At1D1609_53720	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
At1D1609_53740	COG3246	L-lysine catabolic process to acetate
At1D1609_53780	COG1802	Transcriptional regulator
At1D1609_53840	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D1609_53890	COG2207	Transcriptional regulator
At1D1609_53900	COG0765	amino acid transport
At1D1609_53940	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
At1D1609_53960	COG0765	amino acid transport
At1D1609_53970	COG0765	amino acid transport
At1D1609_53980	COG1126	abc transporter atp-binding protein
At1D1609_54010	COG1473	amidohydrolase
At1D1609_54020	COG0583	DNA-binding transcription factor activity
At1D1609_54110	COG1475	DNA binding
At1D1609_54180	COG5489	Protein of unknown function (DUF736)
At1D1609_54210	COG3831	ATPase activity
At1D1609_54220	COG3505	Type IV secretory pathway VirD4
At1D1609_54250	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
At1D1609_54260	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
At1D1609_54330	COG2771	luxR family
At1D1609_54340	COG2948	multi-organism process
At1D1609_54360	COG3504	Conjugal transfer protein
At1D1609_54370	COG3701	Conjugal transfer protein
At1D1609_54380	COG3846	protein secretion by the type IV secretion system
At1D1609_54400	COG5314	conjugation
At1D1609_54410	COG3451	type IV secretory pathway VirB4
At1D1609_54420	COG5268	conjugation
At1D1609_54430	COG3838	Conjugal transfer protein Trbc
At1D1609_54440	COG4962	Type ii secretion system protein e
At1D1609_54450	COG3916	Acyl-homoserine-lactone synthase
At1D1609_54460	COG4644	lycopene metabolic process
At1D1609_54540	COG4372	Transposase
At1D1609_54740	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
At1D1609_54770	COG0840	transmembrane signaling receptor activity
At1D1609_54790	COG4644	lycopene metabolic process
At1D1609_54870	COG1192	Involved in chromosome partitioning
At1D1609_54880	COG1475	DNA binding
At1D1609_54890	COG0640	Transcriptional regulator
At1D1609_54970	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
At1D1609_55050	COG4644	lycopene metabolic process
At1D1609_55160	COG0587	DNA-directed DNA polymerase activity
At1D1609_55340	COG1475	DNA binding
At1D1609_55420	COG1802	Transcriptional regulator
At1D1609_55430	COG3842	ATPase activity
At1D1609_55470	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1609_55480	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
At1D1609_55500	COG1250	3-hydroxyacyl-CoA dehydrogenase
At1D1609_55510	COG0835	chemotaxis
At1D1609_55560	COG5489	Protein of unknown function (DUF736)
At1D1609_55610	COG4372	Transposase
At1D1609_55620	COG3436	PFAM IS66 Orf2 family protein
At1D1609_55640	COG3547	Transposase (IS116 IS110 IS902 family)
At1D1609_55650	COG4644	lycopene metabolic process
At1D1609_55660	COG1902	pentaerythritol trinitrate reductase activity
At1D1609_55700	COG0583	DNA-binding transcription factor activity
At1D1609_55720	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1609_55730	COG1177	transmembrane transport
At1D1609_55740	COG3842	ATPase activity
At1D1609_55760	COG0156	8-amino-7-oxononanoate synthase activity
At1D1609_55770	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1609_55810	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
At1D1609_55820	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_55850	COG1175	transmembrane transport
At1D1609_55900	COG0840	transmembrane signaling receptor activity
At1D1609_55910	COG0835	chemotaxis
At1D1609_55960	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D1609_55980	COG0477	Major facilitator Superfamily
At1D1609_55990	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_56000	COG0583	DNA-binding transcription factor activity
At1D1609_56020	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
At1D1609_56050	COG4977	sequence-specific DNA binding
At1D1609_56060	COG1335	isochorismatase
At1D1609_56070	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
At1D1609_56190	COG1475	DNA binding
At1D1609_56230	COG5489	Protein of unknown function (DUF736)
At1D1609_56260	COG1525	nuclease
At1D1609_56270	COG3831	ATPase activity
At1D1609_56290	COG3505	Type IV secretory pathway VirD4
At1D1609_56320	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
At1D1609_56330	COG4959	Type IV secretory pathway protease TraF
At1D1609_56340	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
At1D1609_56360	COG3177	Filamentation induced by cAMP protein fic
At1D1609_56370	COG1476	TRANSCRIPTIONal
At1D1609_56390	COG2771	luxR family
At1D1609_56400	COG2948	multi-organism process
At1D1609_56420	COG3504	Conjugal transfer protein
At1D1609_56430	COG3701	Conjugal transfer protein
At1D1609_56440	COG3846	protein secretion by the type IV secretion system
At1D1609_56460	COG5314	conjugation
At1D1609_56470	COG3451	type IV secretory pathway VirB4
At1D1609_56480	COG5268	conjugation
At1D1609_56490	COG3838	Conjugal transfer protein Trbc
At1D1609_56500	COG4962	Type ii secretion system protein e
At1D1609_56510	COG3916	Acyl-homoserine-lactone synthase