locus-tag class description IAI05_00005 PF00308 Bacterial dnaA protein IAI05_00005 PF11638 DnaA N-terminal domain IAI05_00005 PF08299 Bacterial dnaA protein helix-turn-helix IAI05_00010 PF06969 HemN C-terminal domain IAI05_00010 PF04055 Radical SAM superfamily IAI05_00015 PF01725 Ham1 family IAI05_00020 PF01138 3' exoribonuclease family, domain 1 IAI05_00020 PF03725 3' exoribonuclease family, domain 2 IAI05_00025 PF01628 HrcA protein C terminal domain IAI05_00030 PF01025 GrpE IAI05_00035 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IAI05_00040 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IAI05_00040 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus IAI05_00045 PF00309 Sigma-54 factor, Activator interacting domain (AID) IAI05_00045 PF04552 Sigma-54, DNA binding domain IAI05_00045 PF04963 Sigma-54 factor, core binding domain IAI05_00050 PF00005 ABC transporter IAI05_00055 PF03968 OstA-like protein IAI05_00065 PF01343 Peptidase family S49 IAI05_00070 PF00216 Bacterial DNA-binding protein IAI05_00080 PF10672 S-adenosylmethionine-dependent methyltransferase IAI05_00080 PF17785 PUA-like domain IAI05_00085 PF08032 RNA 2'-O ribose methyltransferase substrate binding IAI05_00085 PF00588 SpoU rRNA Methylase family IAI05_00090 PF01252 Signal peptidase (SPase) II IAI05_00095 PF00512 His Kinase A (phospho-acceptor) domain IAI05_00095 PF01627 Hpt domain IAI05_00095 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IAI05_00095 PF00672 HAMP domain IAI05_00095 PF00072 Response regulator receiver domain IAI05_00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_00105 PF01624 MutS domain I IAI05_00105 PF05188 MutS domain II IAI05_00105 PF05192 MutS domain III IAI05_00105 PF05190 MutS family domain IV IAI05_00105 PF00488 MutS domain V IAI05_00110 PF01909 Nucleotidyltransferase domain IAI05_00110 PF01966 HD domain IAI05_00110 PF01842 ACT domain IAI05_00110 PF08335 GlnD PII-uridylyltransferase IAI05_00115 PF03023 Lipid II flippase MurJ IAI05_00125 PF00579 tRNA synthetases class I (W and Y) IAI05_00135 PF01106 NifU-like domain IAI05_00140 PF00814 Glycoprotease family IAI05_00150 PF01475 Ferric uptake regulator family IAI05_00155 PF01553 Acyltransferase IAI05_00160 PF04055 Radical SAM superfamily IAI05_00160 PF01938 TRAM domain IAI05_00160 PF00919 Uncharacterized protein family UPF0004 IAI05_00165 PF02562 PhoH-like protein IAI05_00170 PF02130 Uncharacterized protein family UPF0054 IAI05_00175 PF00571 CBS domain IAI05_00175 PF03471 Transporter associated domain IAI05_00180 PF00795 Carbon-nitrogen hydrolase IAI05_00185 PF01381 Helix-turn-helix IAI05_00190 PF02773 S-adenosylmethionine synthetase, C-terminal domain IAI05_00190 PF00438 S-adenosylmethionine synthetase, N-terminal domain IAI05_00190 PF02772 S-adenosylmethionine synthetase, central domain IAI05_00195 PF02390 Putative methyltransferase IAI05_00200 PF00294 pfkB family carbohydrate kinase IAI05_00205 PF02646 RmuC family IAI05_00210 PF01327 Polypeptide deformylase IAI05_00215 PF00551 Formyl transferase IAI05_00215 PF02911 Formyl transferase, C-terminal domain IAI05_00220 PF01416 tRNA pseudouridine synthase IAI05_00230 PF07687 Peptidase dimerisation domain IAI05_00230 PF01546 Peptidase family M20/M25/M40 IAI05_00235 PF14602 Hexapeptide repeat of succinyl-transferase IAI05_00235 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal IAI05_00235 PF00132 Bacterial transferase hexapeptide (six repeats) IAI05_00245 PF00672 HAMP domain IAI05_00245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_00250 PF01156 Inosine-uridine preferring nucleoside hydrolase IAI05_00255 PF00011 Hsp20/alpha crystallin family IAI05_00280 PF00696 Amino acid kinase family IAI05_00290 PF01926 50S ribosome-binding GTPase IAI05_00295 PF02096 60Kd inner membrane protein IAI05_00295 PF14849 YidC periplasmic domain IAI05_00300 PF00825 Ribonuclease P IAI05_00305 PF00468 Ribosomal protein L34 IAI05_00310 PF00672 HAMP domain IAI05_00310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_00310 PF02203 Tar ligand binding domain homologue IAI05_00315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_00315 PF00512 His Kinase A (phospho-acceptor) domain IAI05_00325 PF01209 ubiE/COQ5 methyltransferase family IAI05_00330 PF00005 ABC transporter IAI05_00335 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_00340 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_00350 PF00149 Calcineurin-like phosphoesterase IAI05_00355 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain IAI05_00355 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain IAI05_00365 PF05544 Proline racemase IAI05_00370 PF01979 Amidohydrolase family IAI05_00375 PF00156 Phosphoribosyl transferase domain IAI05_00380 PF00294 pfkB family carbohydrate kinase IAI05_00395 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IAI05_00395 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IAI05_00400 PF00342 Phosphoglucose isomerase IAI05_00405 PF00501 AMP-binding enzyme IAI05_00405 PF13193 AMP-binding enzyme C-terminal domain IAI05_00410 PF00005 ABC transporter IAI05_00410 PF08402 TOBE domain IAI05_00420 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_00425 PF00593 TonB dependent receptor IAI05_00425 PF07715 TonB-dependent Receptor Plug Domain IAI05_00470 PF03976 Polyphosphate kinase 2 (PPK2) IAI05_00475 PF00989 PAS fold IAI05_00475 PF00512 His Kinase A (phospho-acceptor) domain IAI05_00475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_00475 PF16736 Single Cache-like IAI05_00480 PF12849 PBP superfamily domain IAI05_00485 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_00490 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_00495 PF00005 ABC transporter IAI05_00500 PF01895 PhoU domain IAI05_00505 PF00072 Response regulator receiver domain IAI05_00505 PF00486 Transcriptional regulatory protein, C terminal IAI05_00515 PF00202 Aminotransferase class-III IAI05_00520 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IAI05_00520 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IAI05_00525 PF01430 Hsp33 protein IAI05_00530 PF04379 ApaG domain IAI05_00535 PF01053 Cys/Met metabolism PLP-dependent enzyme IAI05_00540 PF00692 dUTPase IAI05_00550 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family IAI05_00555 PF00230 Major intrinsic protein IAI05_00595 PF00196 Bacterial regulatory proteins, luxR family IAI05_00595 PF00072 Response regulator receiver domain IAI05_00605 PF01180 Dihydroorotate dehydrogenase IAI05_00640 PF02082 Transcriptional regulator IAI05_00645 PF00270 DEAD/DEAH box helicase IAI05_00645 PF00271 Helicase conserved C-terminal domain IAI05_00645 PF08494 DEAD/H associated IAI05_00665 PF01925 Sulfite exporter TauE/SafE IAI05_00675 PF12806 Acetyl-CoA dehydrogenase C-terminal like IAI05_00675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IAI05_00675 PF02770 Acyl-CoA dehydrogenase, middle domain IAI05_00675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IAI05_00680 PF02803 Thiolase, C-terminal domain IAI05_00680 PF00108 Thiolase, N-terminal domain IAI05_00685 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IAI05_00685 PF00378 Enoyl-CoA hydratase/isomerase IAI05_00685 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IAI05_00705 PF03334 Na+/H+ antiporter subunit IAI05_00710 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) IAI05_00715 PF01899 Na+/H+ ion antiporter subunit IAI05_00720 PF00361 Proton-conducting membrane transporter IAI05_00725 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IAI05_00730 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter IAI05_00730 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IAI05_00730 PF00361 Proton-conducting membrane transporter IAI05_00730 PF13244 Domain of unknown function (DUF4040) IAI05_00740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_00750 PF00072 Response regulator receiver domain IAI05_00755 PF01584 CheW-like domain IAI05_00755 PF01627 Hpt domain IAI05_00755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_00755 PF02895 Signal transducing histidine kinase, homodimeric domain IAI05_00760 PF03705 CheR methyltransferase, all-alpha domain IAI05_00760 PF01739 CheR methyltransferase, SAM binding domain IAI05_00765 PF00072 Response regulator receiver domain IAI05_00765 PF01339 CheB methylesterase IAI05_00770 PF00072 Response regulator receiver domain IAI05_00775 PF03975 CheD chemotactic sensory transduction IAI05_00785 PF08345 Flagellar M-ring protein C-terminal IAI05_00785 PF01514 Secretory protein of YscJ/FliF family IAI05_00790 PF00196 Bacterial regulatory proteins, luxR family IAI05_00790 PF03472 Autoinducer binding domain IAI05_00800 PF00672 HAMP domain IAI05_00800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_00805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_00805 PF00512 His Kinase A (phospho-acceptor) domain IAI05_00805 PF00072 Response regulator receiver domain IAI05_00805 PF01627 Hpt domain IAI05_00805 PF00672 HAMP domain IAI05_00810 PF01741 Large-conductance mechanosensitive channel, MscL IAI05_00815 PF00155 Aminotransferase class I and II IAI05_00820 PF01370 NAD dependent epimerase/dehydratase family IAI05_00830 PF03884 DNA gyrase inhibitor YacG IAI05_00835 PF02545 Maf-like protein IAI05_00840 PF01176 Translation initiation factor 1A / IF-1 IAI05_00850 PF06793 Uncharacterised protein family (UPF0262) IAI05_00855 PF00815 Histidinol dehydrogenase IAI05_00865 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IAI05_00880 PF00669 Bacterial flagellin N-terminal helical region IAI05_00880 PF00700 Bacterial flagellin C-terminal helical region IAI05_00885 PF00700 Bacterial flagellin C-terminal helical region IAI05_00885 PF00669 Bacterial flagellin N-terminal helical region IAI05_00890 PF00700 Bacterial flagellin C-terminal helical region IAI05_00890 PF00669 Bacterial flagellin N-terminal helical region IAI05_00895 PF00813 FliP family IAI05_00905 PF02107 Flagellar L-ring protein IAI05_00915 PF02119 Flagellar P-ring protein IAI05_00920 PF13144 Chaperone for flagella basal body P-ring formation IAI05_00925 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IAI05_00925 PF00460 Flagella basal body rod protein IAI05_00930 PF02049 Flagellar hook-basal body complex protein FliE IAI05_00935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IAI05_00940 PF00460 Flagella basal body rod protein IAI05_00950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IAI05_00950 PF18269 T3SS EscN ATPase C-terminal domain IAI05_00955 PF00460 Flagella basal body rod protein IAI05_00955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IAI05_00965 PF01618 MotA/TolQ/ExbB proton channel family IAI05_00970 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IAI05_00975 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IAI05_00980 PF01706 FliG C-terminal domain IAI05_00980 PF14841 FliG middle domain IAI05_00980 PF14842 FliG N-terminal domain IAI05_00985 PF01312 FlhB HrpN YscU SpaS Family IAI05_00995 PF00700 Bacterial flagellin C-terminal helical region IAI05_00995 PF00669 Bacterial flagellin N-terminal helical region IAI05_01005 PF13677 Membrane MotB of proton-channel complex MotA/MotB IAI05_01005 PF00691 OmpA family IAI05_01015 PF02120 Flagellar hook-length control protein FliK IAI05_01025 PF00486 Transcriptional regulatory protein, C terminal IAI05_01030 PF07559 Flagellar basal body protein FlaE IAI05_01030 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IAI05_01030 PF00460 Flagella basal body rod protein IAI05_01050 PF07378 Flagellar protein FlbT IAI05_01055 PF03963 Flagellar hook capping protein - N-terminal region IAI05_01060 PF01313 Bacterial export proteins, family 3 IAI05_01065 PF00771 FHIPEP family IAI05_01070 PF01311 Bacterial export proteins, family 1 IAI05_01105 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IAI05_01105 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IAI05_01110 PF00356 Bacterial regulatory proteins, lacI family IAI05_01115 PF01547 Bacterial extracellular solute-binding protein IAI05_01120 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_01125 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_01130 PF00128 Alpha amylase, catalytic domain IAI05_01135 PF17912 MalK OB fold domain IAI05_01135 PF00005 ABC transporter IAI05_01135 PF03459 TOBE domain IAI05_01150 PF00920 Dehydratase family IAI05_01155 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase IAI05_01160 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain IAI05_01160 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain IAI05_01165 PF01266 FAD dependent oxidoreductase IAI05_01170 PF00120 Glutamine synthetase, catalytic domain IAI05_01195 PF00463 Isocitrate lyase family IAI05_01200 PF06114 IrrE N-terminal-like domain IAI05_01200 PF09856 Predicted transcriptional regulator (DUF2083) IAI05_01200 PF01381 Helix-turn-helix IAI05_01205 PF13416 Bacterial extracellular solute-binding protein IAI05_01210 PF00005 ABC transporter IAI05_01210 PF08402 TOBE domain IAI05_01215 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_01220 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_01230 PF13426 PAS domain IAI05_01230 PF13188 PAS domain IAI05_01230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_01230 PF00512 His Kinase A (phospho-acceptor) domain IAI05_01230 PF00989 PAS fold IAI05_01240 PF02541 Ppx/GppA phosphatase family IAI05_01245 PF01728 FtsJ-like methyltransferase IAI05_01250 PF07690 Major Facilitator Superfamily IAI05_01255 PF00753 Metallo-beta-lactamase superfamily IAI05_01260 PF00478 IMP dehydrogenase / GMP reductase domain IAI05_01260 PF00571 CBS domain IAI05_01270 PF08240 Alcohol dehydrogenase GroES-like domain IAI05_01270 PF00107 Zinc-binding dehydrogenase IAI05_01275 PF01738 Dienelactone hydrolase family IAI05_01280 PF00994 Probable molybdopterin binding domain IAI05_01285 PF00288 GHMP kinases N terminal domain IAI05_01285 PF08544 GHMP kinases C terminal IAI05_01295 PF00348 Polyprenyl synthetase IAI05_01310 PF06965 Na+/H+ antiporter 1 IAI05_01310 PF01343 Peptidase family S49 IAI05_01320 PF02091 Glycyl-tRNA synthetase alpha subunit IAI05_01330 PF04011 LemA family IAI05_01335 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IAI05_01345 PF05746 DALR anticodon binding domain IAI05_01345 PF02092 Glycyl-tRNA synthetase beta subunit IAI05_01350 PF04463 Protein of unknown function (DUF523) IAI05_01355 PF00672 HAMP domain IAI05_01355 PF17200 Single Cache domain 2 IAI05_01355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_01365 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IAI05_01365 PF02843 Phosphoribosylglycinamide synthetase, C domain IAI05_01365 PF02844 Phosphoribosylglycinamide synthetase, N domain IAI05_01370 PF00575 S1 RNA binding domain IAI05_01370 PF09371 Tex-like protein N-terminal domain IAI05_01370 PF16921 Tex protein YqgF-like domain IAI05_01370 PF17674 HHH domain IAI05_01385 PF01040 UbiA prenyltransferase family IAI05_01400 PF03466 LysR substrate binding domain IAI05_01400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_01410 PF04107 Glutamate-cysteine ligase family 2(GCS2) IAI05_01415 PF04452 RNA methyltransferase IAI05_01420 PF01384 Phosphate transporter family IAI05_01430 PF05116 Sucrose-6F-phosphate phosphohydrolase IAI05_01435 PF13439 Glycosyltransferase Family 4 IAI05_01435 PF00534 Glycosyl transferases group 1 IAI05_01440 PF00392 Bacterial regulatory proteins, gntR family IAI05_01440 PF07729 FCD domain IAI05_01450 PF03466 LysR substrate binding domain IAI05_01450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_01455 PF02913 FAD linked oxidases, C-terminal domain IAI05_01455 PF01565 FAD binding domain IAI05_01460 PF01565 FAD binding domain IAI05_01465 PF13183 4Fe-4S dicluster domain IAI05_01465 PF02754 Cysteine-rich domain IAI05_01475 PF17969 L,D-transpeptidase C-terminal domain IAI05_01475 PF03734 L,D-transpeptidase catalytic domain IAI05_01480 PF03352 Methyladenine glycosylase IAI05_01490 PF03601 Conserved hypothetical protein 698 IAI05_01495 PF03466 LysR substrate binding domain IAI05_01495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_01525 PF13393 Histidyl-tRNA synthetase IAI05_01525 PF03129 Anticodon binding domain IAI05_01535 PF13393 Histidyl-tRNA synthetase IAI05_01540 PF01634 ATP phosphoribosyltransferase IAI05_01545 PF07681 DoxX IAI05_01555 PF00118 TCP-1/cpn60 chaperonin family IAI05_01560 PF00166 Chaperonin 10 Kd subunit IAI05_01570 PF06574 FAD synthetase IAI05_01570 PF01687 Riboflavin kinase IAI05_01575 PF08264 Anticodon-binding domain of tRNA IAI05_01575 PF00133 tRNA synthetases class I (I, L, M and V) IAI05_01585 PF14437 MafB19-like deaminase IAI05_01590 PF01479 S4 domain IAI05_01590 PF00849 RNA pseudouridylate synthase IAI05_01600 PF01734 Patatin-like phospholipase IAI05_01605 PF02254 TrkA-N domain IAI05_01605 PF00999 Sodium/hydrogen exchanger family IAI05_01610 PF01523 Putative modulator of DNA gyrase IAI05_01615 PF00459 Inositol monophosphatase family IAI05_01625 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IAI05_01625 PF00534 Glycosyl transferases group 1 IAI05_01635 PF02606 Tetraacyldisaccharide-1-P 4'-kinase IAI05_01645 PF01119 DNA mismatch repair protein, C-terminal domain IAI05_01645 PF08676 MutL C terminal dimerisation domain IAI05_01650 PF00486 Transcriptional regulatory protein, C terminal IAI05_01650 PF00072 Response regulator receiver domain IAI05_01655 PF13188 PAS domain IAI05_01655 PF00990 Diguanylate cyclase, GGDEF domain IAI05_01655 PF03707 Bacterial signalling protein N terminal repeat IAI05_01655 PF00563 EAL domain IAI05_01660 PF08450 SMP-30/Gluconolactonase/LRE-like region IAI05_01665 PF01081 KDPG and KHG aldolase IAI05_01670 PF05035 2-keto-3-deoxy-galactonokinase IAI05_01680 PF09339 IclR helix-turn-helix domain IAI05_01680 PF01614 Bacterial transcriptional regulator IAI05_01685 PF00196 Bacterial regulatory proteins, luxR family IAI05_01685 PF03472 Autoinducer binding domain IAI05_01695 PF10609 NUBPL iron-transfer P-loop NTPase IAI05_01700 PF01544 CorA-like Mg2+ transporter protein IAI05_01705 PF02705 K+ potassium transporter IAI05_01720 PF00119 ATP synthase A chain IAI05_01725 PF00137 ATP synthase subunit C IAI05_01730 PF00430 ATP synthase B/B' CF(0) IAI05_01735 PF00430 ATP synthase B/B' CF(0) IAI05_01740 PF09828 Chromate resistance exported protein IAI05_01745 PF02417 Chromate transporter IAI05_01750 PF01351 Ribonuclease HII IAI05_01765 PF02913 FAD linked oxidases, C-terminal domain IAI05_01765 PF01565 FAD binding domain IAI05_01770 PF01300 Telomere recombination IAI05_01770 PF03481 Putative GTP-binding controlling metal-binding IAI05_01780 PF00355 Rieske [2Fe-2S] domain IAI05_01780 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IAI05_01785 PF00970 Oxidoreductase FAD-binding domain IAI05_01785 PF00175 Oxidoreductase NAD-binding domain IAI05_01785 PF00111 2Fe-2S iron-sulfur cluster binding domain IAI05_01790 PF07886 BA14K-like protein IAI05_01795 PF07886 BA14K-like protein IAI05_01805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IAI05_01805 PF02770 Acyl-CoA dehydrogenase, middle domain IAI05_01805 PF12806 Acetyl-CoA dehydrogenase C-terminal like IAI05_01805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IAI05_01820 PF05958 tRNA (Uracil-5-)-methyltransferase IAI05_01825 PF01479 S4 domain IAI05_01825 PF01728 FtsJ-like methyltransferase IAI05_01830 PF02203 Tar ligand binding domain homologue IAI05_01830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_01830 PF00672 HAMP domain IAI05_01840 PF01037 Lrp/AsnC ligand binding domain IAI05_01865 PF02780 Transketolase, C-terminal domain IAI05_01865 PF02779 Transketolase, pyrimidine binding domain IAI05_01865 PF13292 1-deoxy-D-xylulose-5-phosphate synthase IAI05_01870 PF02678 Pirin IAI05_01870 PF05726 Pirin C-terminal cupin domain IAI05_01875 PF02609 Exonuclease VII small subunit IAI05_01880 PF00850 Histone deacetylase domain IAI05_01885 PF02632 BioY family IAI05_01890 PF02361 Cobalt transport protein IAI05_01895 PF00005 ABC transporter IAI05_01900 PF06224 Winged helix DNA-binding domain IAI05_01905 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IAI05_01905 PF00925 GTP cyclohydrolase II IAI05_01910 PF01264 Chorismate synthase IAI05_01925 PF00300 Histidine phosphatase superfamily (branch 1) IAI05_01935 PF00684 DnaJ central domain IAI05_01935 PF01556 DnaJ C terminal domain IAI05_01935 PF00226 DnaJ domain IAI05_01945 PF01243 Pyridoxamine 5'-phosphate oxidase IAI05_01945 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region IAI05_01965 PF13419 Haloacid dehalogenase-like hydrolase IAI05_01975 PF01523 Putative modulator of DNA gyrase IAI05_01985 PF02790 Cytochrome C oxidase subunit II, transmembrane domain IAI05_01985 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IAI05_01990 PF00115 Cytochrome C and Quinol oxidase polypeptide I IAI05_01995 PF01040 UbiA prenyltransferase family IAI05_02000 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 IAI05_02005 PF00510 Cytochrome c oxidase subunit III IAI05_02015 PF02104 SURF1 family IAI05_02020 PF02401 LytB protein IAI05_02025 PF01636 Phosphotransferase enzyme family IAI05_02030 PF00075 RNase H IAI05_02040 PF08534 Redoxin IAI05_02040 PF00462 Glutaredoxin IAI05_02050 PF02622 Uncharacterized ACR, COG1678 IAI05_02055 PF05532 CsbD-like IAI05_02060 PF15887 Putative zinc-binding metallo-peptidase IAI05_02060 PF10005 zinc-ribbon domain IAI05_02065 PF00563 EAL domain IAI05_02065 PF03707 Bacterial signalling protein N terminal repeat IAI05_02065 PF00990 Diguanylate cyclase, GGDEF domain IAI05_02065 PF13188 PAS domain IAI05_02070 PF13302 Acetyltransferase (GNAT) domain IAI05_02075 PF00675 Insulinase (Peptidase family M16) IAI05_02075 PF05193 Peptidase M16 inactive domain IAI05_02080 PF00291 Pyridoxal-phosphate dependent enzyme IAI05_02080 PF14821 Threonine synthase N terminus IAI05_02100 PF13419 Haloacid dehalogenase-like hydrolase IAI05_02105 PF00392 Bacterial regulatory proteins, gntR family IAI05_02105 PF07729 FCD domain IAI05_02125 PF01555 DNA methylase IAI05_02125 PF18755 Restriction Enzyme Adenine Methylase Associated IAI05_02130 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH IAI05_02135 PF05016 ParE toxin of type II toxin-antitoxin system, parDE IAI05_02145 PF14815 NUDIX domain IAI05_02145 PF00730 HhH-GPD superfamily base excision DNA repair protein IAI05_02160 PF13462 Thioredoxin IAI05_02165 PF02463 RecF/RecN/SMC N terminal domain IAI05_02170 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IAI05_02175 PF02896 PEP-utilising enzyme, TIM barrel domain IAI05_02175 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IAI05_02175 PF00391 PEP-utilising enzyme, mobile domain IAI05_02190 PF00375 Sodium:dicarboxylate symporter family IAI05_02215 PF06039 Malate:quinone oxidoreductase (Mqo) IAI05_02230 PF00009 Elongation factor Tu GTP binding domain IAI05_02235 PF01507 Phosphoadenosine phosphosulfate reductase family IAI05_02240 PF01507 Phosphoadenosine phosphosulfate reductase family IAI05_02245 PF02082 Transcriptional regulator IAI05_02255 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_02260 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_02265 PF12857 TOBE-like domain IAI05_02265 PF00005 ABC transporter IAI05_02270 PF03852 DNA mismatch endonuclease Vsr IAI05_02285 PF00109 Beta-ketoacyl synthase, N-terminal domain IAI05_02285 PF16197 Ketoacyl-synthetase C-terminal extension IAI05_02285 PF08240 Alcohol dehydrogenase GroES-like domain IAI05_02285 PF14765 Polyketide synthase dehydratase IAI05_02285 PF00698 Acyl transferase domain IAI05_02285 PF00550 Phosphopantetheine attachment site IAI05_02285 PF00107 Zinc-binding dehydrogenase IAI05_02285 PF08659 KR domain IAI05_02285 PF02801 Beta-ketoacyl synthase, C-terminal domain IAI05_02290 PF00990 Diguanylate cyclase, GGDEF domain IAI05_02290 PF01590 GAF domain IAI05_02290 PF00563 EAL domain IAI05_02290 PF00989 PAS fold IAI05_02300 PF00440 Bacterial regulatory proteins, tetR family IAI05_02300 PF13977 BetI-type transcriptional repressor, C-terminal IAI05_02305 PF00171 Aldehyde dehydrogenase family IAI05_02310 PF00732 GMC oxidoreductase IAI05_02310 PF05199 GMC oxidoreductase IAI05_02340 PF00043 Glutathione S-transferase, C-terminal domain IAI05_02340 PF02798 Glutathione S-transferase, N-terminal domain IAI05_02350 PF07690 Major Facilitator Superfamily IAI05_02365 PF04675 DNA ligase N terminus IAI05_02365 PF01068 ATP dependent DNA ligase domain IAI05_02365 PF04679 ATP dependent DNA ligase C terminal region IAI05_02375 PF04488 Glycosyltransferase sugar-binding region containing DXD motif IAI05_02380 PF00403 Heavy-metal-associated domain IAI05_02385 PF17969 L,D-transpeptidase C-terminal domain IAI05_02385 PF03734 L,D-transpeptidase catalytic domain IAI05_02390 PF17969 L,D-transpeptidase C-terminal domain IAI05_02390 PF03734 L,D-transpeptidase catalytic domain IAI05_02395 PF01047 MarR family IAI05_02400 PF02566 OsmC-like protein IAI05_02415 PF12848 ABC transporter IAI05_02415 PF00005 ABC transporter IAI05_02445 PF03466 LysR substrate binding domain IAI05_02445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_02450 PF00106 short chain dehydrogenase IAI05_02465 PF05872 Bacterial protein of unknown function (DUF853) IAI05_02475 PF01638 HxlR-like helix-turn-helix IAI05_02480 PF00106 short chain dehydrogenase IAI05_02485 PF12833 Helix-turn-helix domain IAI05_02495 PF00248 Aldo/keto reductase family IAI05_02500 PF01062 Bestrophin, RFP-TM, chloride channel IAI05_02520 PF01063 Amino-transferase class IV IAI05_02525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_02525 PF02203 Tar ligand binding domain homologue IAI05_02525 PF00672 HAMP domain IAI05_02530 PF03466 LysR substrate binding domain IAI05_02530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_02545 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IAI05_02545 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IAI05_02560 PF01810 LysE type translocator IAI05_02565 PF01322 Cytochrome C' IAI05_02570 PF00034 Cytochrome c IAI05_02600 PF09278 MerR, DNA binding IAI05_02600 PF00376 MerR family regulatory protein IAI05_02610 PF02583 Metal-sensitive transcriptional repressor IAI05_02625 PF00571 CBS domain IAI05_02625 PF00005 ABC transporter IAI05_02630 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_02640 PF00326 Prolyl oligopeptidase family IAI05_02640 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IAI05_02650 PF00701 Dihydrodipicolinate synthetase family IAI05_02660 PF12833 Helix-turn-helix domain IAI05_02660 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IAI05_02660 PF02805 Metal binding domain of Ada IAI05_02660 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IAI05_02665 PF01594 AI-2E family transporter IAI05_02670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IAI05_02685 PF03006 Haemolysin-III related IAI05_02695 PF01810 LysE type translocator IAI05_02700 PF01641 SelR domain IAI05_02705 PF13244 Domain of unknown function (DUF4040) IAI05_02705 PF00361 Proton-conducting membrane transporter IAI05_02705 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IAI05_02710 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter IAI05_02715 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IAI05_02720 PF00361 Proton-conducting membrane transporter IAI05_02725 PF01899 Na+/H+ ion antiporter subunit IAI05_02730 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) IAI05_02735 PF03334 Na+/H+ antiporter subunit IAI05_02740 PF05443 ROS/MUCR transcriptional regulator protein IAI05_02755 PF02657 Fe-S metabolism associated domain IAI05_02760 PF17264 Family of unknown function (DUF5330) IAI05_02765 PF00512 His Kinase A (phospho-acceptor) domain IAI05_02765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_02800 PF01810 LysE type translocator IAI05_02805 PF03466 LysR substrate binding domain IAI05_02805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_02810 PF00905 Penicillin binding protein transpeptidase domain IAI05_02810 PF00912 Transglycosylase IAI05_02815 PF03692 Putative zinc- or iron-chelating domain IAI05_02820 PF00905 Penicillin binding protein transpeptidase domain IAI05_02830 PF00403 Heavy-metal-associated domain IAI05_02835 PF00376 MerR family regulatory protein IAI05_02835 PF09278 MerR, DNA binding IAI05_02860 PF07690 Major Facilitator Superfamily IAI05_02870 PF00251 Glycosyl hydrolases family 32 N-terminal domain IAI05_02870 PF08244 Glycosyl hydrolases family 32 C terminal IAI05_02875 PF02696 Uncharacterized ACR, YdiU/UPF0061 family IAI05_02885 PF01037 Lrp/AsnC ligand binding domain IAI05_02885 PF13404 AsnC-type helix-turn-helix domain IAI05_02925 PF04860 Phage portal protein IAI05_03015 PF00072 Response regulator receiver domain IAI05_03015 PF00486 Transcriptional regulatory protein, C terminal IAI05_03020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_03035 PF03100 CcmE IAI05_03040 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IAI05_03040 PF01578 Cytochrome C assembly protein IAI05_03045 PF03918 Cytochrome C biogenesis protein IAI05_03050 PF13180 PDZ domain IAI05_03055 PF00486 Transcriptional regulatory protein, C terminal IAI05_03055 PF00072 Response regulator receiver domain IAI05_03060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_03060 PF00672 HAMP domain IAI05_03060 PF00512 His Kinase A (phospho-acceptor) domain IAI05_03065 PF04134 Protein of unknown function, DUF393 IAI05_03070 PF06629 MltA-interacting protein MipA IAI05_03075 PF08335 GlnD PII-uridylyltransferase IAI05_03075 PF03710 Glutamate-ammonia ligase adenylyltransferase IAI05_03080 PF00989 PAS fold IAI05_03080 PF00512 His Kinase A (phospho-acceptor) domain IAI05_03080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_03090 PF01433 Peptidase family M1 domain IAI05_03090 PF17432 Domain of unknown function (DUF3458_C) ARM repeats IAI05_03090 PF11940 Domain of unknown function (DUF3458) Ig-like fold IAI05_03095 PF00892 EamA-like transporter family IAI05_03110 PF00012 Hsp70 protein IAI05_03115 PF00990 Diguanylate cyclase, GGDEF domain IAI05_03150 PF00107 Zinc-binding dehydrogenase IAI05_03150 PF08240 Alcohol dehydrogenase GroES-like domain IAI05_03155 PF01638 HxlR-like helix-turn-helix IAI05_03160 PF02673 Bacitracin resistance protein BacA IAI05_03165 PF03448 MgtE intracellular N domain IAI05_03165 PF01769 Divalent cation transporter IAI05_03165 PF00571 CBS domain IAI05_03170 PF07690 Major Facilitator Superfamily IAI05_03175 PF00781 Diacylglycerol kinase catalytic domain IAI05_03180 PF00202 Aminotransferase class-III IAI05_03190 PF09957 Bacterial antitoxin of type II TA system, VapB IAI05_03195 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus IAI05_03195 PF01048 Phosphorylase superfamily IAI05_03225 PF00155 Aminotransferase class I and II IAI05_03235 PF07992 Pyridine nucleotide-disulphide oxidoreductase IAI05_03235 PF14759 Reductase C-terminal IAI05_03240 PF03328 HpcH/HpaI aldolase/citrate lyase family IAI05_03265 PF02530 Porin subfamily IAI05_03270 PF02530 Porin subfamily IAI05_03275 PF01464 Transglycosylase SLT domain IAI05_03275 PF14718 Soluble lytic murein transglycosylase L domain IAI05_03280 PF00701 Dihydrodipicolinate synthetase family IAI05_03285 PF01668 SmpB protein IAI05_03290 PF00672 HAMP domain IAI05_03290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_03290 PF02203 Tar ligand binding domain homologue IAI05_03300 PF01192 RNA polymerase Rpb6 IAI05_03305 PF13291 ACT domain IAI05_03305 PF02824 TGS domain IAI05_03305 PF04607 Region found in RelA / SpoT proteins IAI05_03320 PF01648 4'-phosphopantetheinyl transferase superfamily IAI05_03325 PF10502 Signal peptidase, peptidase S26 IAI05_03330 PF14622 Ribonuclease-III-like IAI05_03330 PF00035 Double-stranded RNA binding motif IAI05_03335 PF07650 KH domain IAI05_03335 PF01926 50S ribosome-binding GTPase IAI05_03345 PF00072 Response regulator receiver domain IAI05_03350 PF11967 Recombination protein O N terminal IAI05_03350 PF02565 Recombination protein O C terminal IAI05_03355 PF07690 Major Facilitator Superfamily IAI05_03360 PF08241 Methyltransferase domain IAI05_03370 PF01966 HD domain IAI05_03380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IAI05_03390 PF00005 ABC transporter IAI05_03395 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_03400 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment IAI05_03405 PF00924 Mechanosensitive ion channel IAI05_03405 PF05552 Conserved TM helix IAI05_03415 PF01966 HD domain IAI05_03420 PF01571 Aminomethyltransferase folate-binding domain IAI05_03440 PF00293 NUDIX domain IAI05_03445 PF02694 Uncharacterised BCR, YnfA/UPF0060 family IAI05_03455 PF00990 Diguanylate cyclase, GGDEF domain IAI05_03455 PF00072 Response regulator receiver domain IAI05_03460 PF01066 CDP-alcohol phosphatidyltransferase IAI05_03465 PF02666 Phosphatidylserine decarboxylase IAI05_03470 PF00005 ABC transporter IAI05_03470 PF00664 ABC transporter transmembrane region IAI05_03480 PF03641 Possible lysine decarboxylase IAI05_03485 PF00905 Penicillin binding protein transpeptidase domain IAI05_03485 PF03717 Penicillin-binding Protein dimerisation domain IAI05_03490 PF00892 EamA-like transporter family IAI05_03495 PF00561 alpha/beta hydrolase fold IAI05_03510 PF04480 Protein of unknown function (DUF559) IAI05_03515 PF09190 DALR domain IAI05_03515 PF01406 tRNA synthetases class I (C) catalytic domain IAI05_03520 PF00106 short chain dehydrogenase IAI05_03525 PF00156 Phosphoribosyl transferase domain IAI05_03525 PF13537 Glutamine amidotransferase domain IAI05_03530 PF02674 Colicin V production protein IAI05_03535 PF06745 KaiC IAI05_03535 PF18073 Rubredoxin metal binding domain IAI05_03550 PF00842 Alanine racemase, C-terminal domain IAI05_03550 PF01168 Alanine racemase, N-terminal domain IAI05_03555 PF12852 Cupin IAI05_03555 PF12833 Helix-turn-helix domain IAI05_03560 PF03591 AzlC protein IAI05_03570 PF00772 DnaB-like helicase N terminal domain IAI05_03570 PF03796 DnaB-like helicase C terminal domain IAI05_03585 PF13533 Biotin-lipoyl like IAI05_03590 PF01281 Ribosomal protein L9, N-terminal domain IAI05_03590 PF03948 Ribosomal protein L9, C-terminal domain IAI05_03600 PF01084 Ribosomal protein S18 IAI05_03605 PF01250 Ribosomal protein S6 IAI05_03615 PF00248 Aldo/keto reductase family IAI05_03620 PF00698 Acyl transferase domain IAI05_03630 PF00550 Phosphopantetheine attachment site IAI05_03635 PF02801 Beta-ketoacyl synthase, C-terminal domain IAI05_03635 PF00109 Beta-ketoacyl synthase, N-terminal domain IAI05_03640 PF02618 YceG-like family IAI05_03645 PF03755 YicC-like family, N-terminal region IAI05_03645 PF08340 Domain of unknown function (DUF1732) IAI05_03650 PF00625 Guanylate kinase IAI05_03665 PF00398 Ribosomal RNA adenine dimethylase IAI05_03670 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IAI05_03680 PF04453 LPS transport system D IAI05_03680 PF03968 OstA-like protein IAI05_03695 PF02789 Cytosol aminopeptidase family, N-terminal domain IAI05_03695 PF00883 Cytosol aminopeptidase family, catalytic domain IAI05_03705 PF03707 Bacterial signalling protein N terminal repeat IAI05_03705 PF00563 EAL domain IAI05_03705 PF00990 Diguanylate cyclase, GGDEF domain IAI05_03710 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_03715 PF01590 GAF domain IAI05_03715 PF00990 Diguanylate cyclase, GGDEF domain IAI05_03715 PF00360 Phytochrome region IAI05_03715 PF00563 EAL domain IAI05_03720 PF00563 EAL domain IAI05_03720 PF00990 Diguanylate cyclase, GGDEF domain IAI05_03720 PF03707 Bacterial signalling protein N terminal repeat IAI05_03725 PF00989 PAS fold IAI05_03725 PF00512 His Kinase A (phospho-acceptor) domain IAI05_03725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_03730 PF00196 Bacterial regulatory proteins, luxR family IAI05_03730 PF00072 Response regulator receiver domain IAI05_03740 PF00005 ABC transporter IAI05_03740 PF12848 ABC transporter IAI05_03745 PF17158 Membrane-associated sensor, integral membrane domain IAI05_03745 PF00990 Diguanylate cyclase, GGDEF domain IAI05_03750 PF13417 Glutathione S-transferase, N-terminal domain IAI05_03755 PF00334 Nucleoside diphosphate kinase IAI05_03775 PF02391 MoaE protein IAI05_03785 PF01066 CDP-alcohol phosphatidyltransferase IAI05_03790 PF01541 GIY-YIG catalytic domain IAI05_03790 PF02151 UvrB/uvrC motif IAI05_03790 PF08459 UvrC Helix-hairpin-helix N-terminal IAI05_03800 PF13505 Outer membrane protein beta-barrel domain IAI05_03805 PF00043 Glutathione S-transferase, C-terminal domain IAI05_03805 PF13417 Glutathione S-transferase, N-terminal domain IAI05_03810 PF00445 Ribonuclease T2 family IAI05_03820 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ IAI05_03825 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IAI05_03825 PF01568 Molydopterin dinucleotide binding domain IAI05_03825 PF00384 Molybdopterin oxidoreductase IAI05_03830 PF00293 NUDIX domain IAI05_03840 PF00551 Formyl transferase IAI05_03845 PF00586 AIR synthase related protein, N-terminal domain IAI05_03845 PF02769 AIR synthase related protein, C-terminal domain IAI05_03855 PF01594 AI-2E family transporter IAI05_03865 PF13089 Polyphosphate kinase N-terminal domain IAI05_03865 PF17941 Polyphosphate kinase C-terminal domain 1 IAI05_03865 PF02503 Polyphosphate kinase middle domain IAI05_03865 PF13090 Polyphosphate kinase C-terminal domain 2 IAI05_03870 PF02541 Ppx/GppA phosphatase family IAI05_03875 PF00132 Bacterial transferase hexapeptide (six repeats) IAI05_03895 PF00211 Adenylate and Guanylate cyclase catalytic domain IAI05_03905 PF01612 3'-5' exonuclease IAI05_03905 PF00570 HRDC domain IAI05_03910 PF07690 Major Facilitator Superfamily IAI05_03915 PF02938 GAD domain IAI05_03915 PF00152 tRNA synthetases class II (D, K and N) IAI05_03915 PF01336 OB-fold nucleic acid binding domain IAI05_03925 PF02203 Tar ligand binding domain homologue IAI05_03925 PF00672 HAMP domain IAI05_03925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_03930 PF00916 Sulfate permease family IAI05_03930 PF01740 STAS domain IAI05_03940 PF00521 DNA gyrase/topoisomerase IV, subunit A IAI05_03940 PF03989 DNA gyrase C-terminal domain, beta-propeller IAI05_03945 PF04376 Arginine-tRNA-protein transferase, N terminus IAI05_03945 PF04377 Arginine-tRNA-protein transferase, C terminus IAI05_03955 PF00490 Delta-aminolevulinic acid dehydratase IAI05_03975 PF00464 Serine hydroxymethyltransferase IAI05_03980 PF03477 ATP cone domain IAI05_03985 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IAI05_03985 PF01872 RibD C-terminal domain IAI05_03990 PF00677 Lumazine binding domain IAI05_03995 PF01810 LysE type translocator IAI05_04000 PF00885 6,7-dimethyl-8-ribityllumazine synthase IAI05_04005 PF01029 NusB family IAI05_04010 PF07690 Major Facilitator Superfamily IAI05_04015 PF03030 Inorganic H+ pyrophosphatase IAI05_04035 PF02504 Fatty acid synthesis protein IAI05_04040 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IAI05_04040 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IAI05_04045 PF00216 Bacterial DNA-binding protein IAI05_04050 PF13411 MerR HTH family regulatory protein IAI05_04065 PF00403 Heavy-metal-associated domain IAI05_04070 PF00175 Oxidoreductase NAD-binding domain IAI05_04070 PF00111 2Fe-2S iron-sulfur cluster binding domain IAI05_04070 PF00970 Oxidoreductase FAD-binding domain IAI05_04075 PF09278 MerR, DNA binding IAI05_04075 PF00376 MerR family regulatory protein IAI05_04080 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_04085 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_04085 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_04090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_04090 PF00005 ABC transporter IAI05_04095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_04095 PF00005 ABC transporter IAI05_04100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_04110 PF02386 Cation transport protein IAI05_04115 PF00291 Pyridoxal-phosphate dependent enzyme IAI05_04115 PF00585 C-terminal regulatory domain of Threonine dehydratase IAI05_04125 PF00990 Diguanylate cyclase, GGDEF domain IAI05_04130 PF02525 Flavodoxin-like fold IAI05_04135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_04135 PF03466 LysR substrate binding domain IAI05_04140 PF00149 Calcineurin-like phosphoesterase IAI05_04140 PF02872 5'-nucleotidase, C-terminal domain IAI05_04160 PF00581 Rhodanese-like domain IAI05_04165 PF02272 DHHA1 domain IAI05_04165 PF01411 tRNA synthetases class II (A) IAI05_04165 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IAI05_04170 PF00291 Pyridoxal-phosphate dependent enzyme IAI05_04170 PF00571 CBS domain IAI05_04175 PF03441 FAD binding domain of DNA photolyase IAI05_04175 PF00875 DNA photolyase IAI05_04185 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IAI05_04185 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IAI05_04215 PF06055 Exopolysaccharide synthesis, ExoD IAI05_04220 PF09335 SNARE associated Golgi protein IAI05_04265 PF02397 Bacterial sugar transferase IAI05_04270 PF00534 Glycosyl transferases group 1 IAI05_04295 PF02628 Cytochrome oxidase assembly protein IAI05_04300 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase IAI05_04305 PF01118 Semialdehyde dehydrogenase, NAD binding domain IAI05_04310 PF00491 Arginase family IAI05_04315 PF00380 Ribosomal protein S9/S16 IAI05_04320 PF00572 Ribosomal protein L13 IAI05_04330 PF13380 CoA binding domain IAI05_04335 PF01053 Cys/Met metabolism PLP-dependent enzyme IAI05_04360 PF00067 Cytochrome P450 IAI05_04365 PF00990 Diguanylate cyclase, GGDEF domain IAI05_04370 PF00574 Clp protease IAI05_04375 PF07724 AAA domain (Cdc48 subfamily) IAI05_04375 PF10431 C-terminal, D2-small domain, of ClpB protein IAI05_04375 PF06689 ClpX C4-type zinc finger IAI05_04380 PF00004 ATPase family associated with various cellular activities (AAA) IAI05_04380 PF02190 ATP-dependent protease La (LON) substrate-binding domain IAI05_04380 PF05362 Lon protease (S16) C-terminal proteolytic domain IAI05_04385 PF00216 Bacterial DNA-binding protein IAI05_04390 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IAI05_04415 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 IAI05_04420 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit IAI05_04425 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit IAI05_04435 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit IAI05_04450 PF10531 SLBB domain IAI05_04450 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IAI05_04450 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IAI05_04455 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal IAI05_04455 PF00384 Molybdopterin oxidoreductase IAI05_04455 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IAI05_04460 PF00146 NADH dehydrogenase IAI05_04465 PF12838 4Fe-4S dicluster domain IAI05_04470 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 IAI05_04475 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IAI05_04480 PF00361 Proton-conducting membrane transporter IAI05_04480 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IAI05_04485 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus IAI05_04485 PF00361 Proton-conducting membrane transporter IAI05_04490 PF00361 Proton-conducting membrane transporter IAI05_04495 PF02237 Biotin protein ligase C terminal domain IAI05_04495 PF08279 HTH domain IAI05_04495 PF03099 Biotin/lipoate A/B protein ligase family IAI05_04500 PF17770 Ribonuclease J C-terminal domain IAI05_04500 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain IAI05_04500 PF12706 Beta-lactamase superfamily domain IAI05_04510 PF03129 Anticodon binding domain IAI05_04510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IAI05_04515 PF12704 MacB-like periplasmic core domain IAI05_04515 PF02687 FtsX-like permease family IAI05_04520 PF00005 ABC transporter IAI05_04525 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IAI05_04525 PF07733 Bacterial DNA polymerase III alpha NTPase domain IAI05_04525 PF02811 PHP domain IAI05_04525 PF14579 Helix-hairpin-helix motif IAI05_04535 PF11799 impB/mucB/samB family C-terminal domain IAI05_04535 PF00817 impB/mucB/samB family IAI05_04555 PF00072 Response regulator receiver domain IAI05_04560 PF00072 Response regulator receiver domain IAI05_04560 PF00990 Diguanylate cyclase, GGDEF domain IAI05_04565 PF00471 Ribosomal protein L33 IAI05_04570 PF07690 Major Facilitator Superfamily IAI05_04585 PF00575 S1 RNA binding domain IAI05_04585 PF08206 Ribonuclease B OB domain IAI05_04585 PF08461 Ribonuclease R winged-helix domain IAI05_04585 PF17876 Cold shock domain IAI05_04585 PF00773 RNB domain IAI05_04590 PF01396 Topoisomerase DNA binding C4 zinc finger IAI05_04590 PF01131 DNA topoisomerase IAI05_04590 PF13368 Topoisomerase C-terminal repeat IAI05_04590 PF01751 Toprim domain IAI05_04600 PF17782 DprA winged helix domain IAI05_04600 PF02481 DNA recombination-mediator protein A IAI05_04605 PF02660 Glycerol-3-phosphate acyltransferase IAI05_04610 PF01979 Amidohydrolase family IAI05_04615 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IAI05_04615 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IAI05_04630 PF02770 Acyl-CoA dehydrogenase, middle domain IAI05_04630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IAI05_04630 PF18158 Adaptive response protein AidB N-terminal domain IAI05_04635 PF00583 Acetyltransferase (GNAT) family IAI05_04655 PF03652 Holliday junction resolvase IAI05_04660 PF03831 PhnA domain IAI05_04660 PF08274 PhnA Zinc-Ribbon IAI05_04670 PF02686 Glu-tRNAGln amidotransferase C subunit IAI05_04675 PF01425 Amidase IAI05_04680 PF13673 Acetyltransferase (GNAT) domain IAI05_04680 PF00583 Acetyltransferase (GNAT) family IAI05_04685 PF09857 Putative toxin of bacterial toxin-antitoxin pair IAI05_04700 PF02637 GatB domain IAI05_04700 PF02934 GatB/GatE catalytic domain IAI05_04710 PF00583 Acetyltransferase (GNAT) family IAI05_04730 PF03588 Leucyl/phenylalanyl-tRNA protein transferase IAI05_04735 PF00289 Biotin carboxylase, N-terminal domain IAI05_04735 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IAI05_04735 PF02785 Biotin carboxylase C-terminal domain IAI05_04740 PF00364 Biotin-requiring enzyme IAI05_04745 PF01220 Dehydroquinase class II IAI05_04755 PF00155 Aminotransferase class I and II IAI05_04780 PF00575 S1 RNA binding domain IAI05_04780 PF12111 Polyribonucleotide phosphorylase C terminal IAI05_04780 PF10150 Ribonuclease E/G family IAI05_04785 PF01520 N-acetylmuramoyl-L-alanine amidase IAI05_04790 PF17092 Penicillin-binding protein OB-like domain IAI05_04790 PF00905 Penicillin binding protein transpeptidase domain IAI05_04790 PF00912 Transglycosylase IAI05_04810 PF01513 ATP-NAD kinase IAI05_04815 PF02567 Phenazine biosynthesis-like protein IAI05_04820 PF00009 Elongation factor Tu GTP binding domain IAI05_04820 PF03764 Elongation factor G, domain IV IAI05_04820 PF00679 Elongation factor G C-terminus IAI05_04835 PF00111 2Fe-2S iron-sulfur cluster binding domain IAI05_04845 PF00809 Pterin binding enzyme IAI05_04850 PF02152 Dihydroneopterin aldolase IAI05_04855 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IAI05_04865 PF05128 Domain of unknown function (DUF697) IAI05_04870 PF04317 YcjX-like family, DUF463 IAI05_04880 PF01258 Prokaryotic dksA/traR C4-type zinc finger IAI05_04895 PF08448 PAS fold IAI05_04895 PF00512 His Kinase A (phospho-acceptor) domain IAI05_04895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_04895 PF13188 PAS domain IAI05_04895 PF00072 Response regulator receiver domain IAI05_04900 PF02617 ATP-dependent Clp protease adaptor protein ClpS IAI05_04905 PF17871 AAA lid domain IAI05_04905 PF07724 AAA domain (Cdc48 subfamily) IAI05_04905 PF02861 Clp amino terminal domain, pathogenicity island component IAI05_04905 PF10431 C-terminal, D2-small domain, of ClpB protein IAI05_04905 PF00004 ATPase family associated with various cellular activities (AAA) IAI05_04920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_04920 PF03466 LysR substrate binding domain IAI05_04930 PF01230 HIT domain IAI05_04955 PF00318 Ribosomal protein S2 IAI05_04960 PF00889 Elongation factor TS IAI05_04965 PF00696 Amino acid kinase family IAI05_04970 PF01765 Ribosome recycling factor IAI05_04975 PF01255 Putative undecaprenyl diphosphate synthase IAI05_04985 PF02163 Peptidase family M50 IAI05_04985 PF17820 PDZ domain IAI05_04990 PF07244 Surface antigen variable number repeat IAI05_04990 PF01103 Surface antigen IAI05_04995 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IAI05_04995 PF00132 Bacterial transferase hexapeptide (six repeats) IAI05_05000 PF07977 FabA-like domain IAI05_05005 PF00132 Bacterial transferase hexapeptide (six repeats) IAI05_05005 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IAI05_05010 PF17930 LpxI N-terminal domain IAI05_05010 PF06230 LpxI C-terminal domain IAI05_05015 PF02684 Lipid-A-disaccharide synthetase IAI05_05020 PF00392 Bacterial regulatory proteins, gntR family IAI05_05020 PF07729 FCD domain IAI05_05025 PF00497 Bacterial extracellular solute-binding proteins, family 3 IAI05_05030 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_05035 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_05040 PF00005 ABC transporter IAI05_05045 PF00285 Citrate synthase, C-terminal domain IAI05_05060 PF00717 Peptidase S24-like IAI05_05060 PF01726 LexA DNA binding domain IAI05_05070 PF00793 DAHP synthetase I family IAI05_05075 PF03952 Enolase, N-terminal domain IAI05_05075 PF00113 Enolase, C-terminal TIM barrel domain IAI05_05085 PF00676 Dehydrogenase E1 component IAI05_05090 PF00364 Biotin-requiring enzyme IAI05_05090 PF02779 Transketolase, pyrimidine binding domain IAI05_05090 PF02780 Transketolase, C-terminal domain IAI05_05095 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IAI05_05095 PF02817 e3 binding domain IAI05_05095 PF00364 Biotin-requiring enzyme IAI05_05105 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IAI05_05105 PF07992 Pyridine nucleotide-disulphide oxidoreductase IAI05_05115 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family IAI05_05115 PF04055 Radical SAM superfamily IAI05_05120 PF00892 EamA-like transporter family IAI05_05140 PF03364 Polyketide cyclase / dehydrase and lipid transport IAI05_05145 PF02464 Competence-damaged protein IAI05_05150 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IAI05_05150 PF02542 YgbB family IAI05_05155 PF01207 Dihydrouridine synthase (Dus) IAI05_05160 PF00989 PAS fold IAI05_05160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_05160 PF00512 His Kinase A (phospho-acceptor) domain IAI05_05165 PF02954 Bacterial regulatory protein, Fis family IAI05_05165 PF00072 Response regulator receiver domain IAI05_05165 PF00158 Sigma-54 interaction domain IAI05_05170 PF00672 HAMP domain IAI05_05170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_05170 PF00512 His Kinase A (phospho-acceptor) domain IAI05_05170 PF00989 PAS fold IAI05_05175 PF02954 Bacterial regulatory protein, Fis family IAI05_05175 PF00072 Response regulator receiver domain IAI05_05175 PF00158 Sigma-54 interaction domain IAI05_05180 PF02254 TrkA-N domain IAI05_05180 PF02080 TrkA-C domain IAI05_05185 PF17209 Hfq protein IAI05_05190 PF01926 50S ribosome-binding GTPase IAI05_05190 PF13167 GTP-binding GTPase N-terminal IAI05_05190 PF16360 GTP-binding GTPase Middle Region IAI05_05195 PF03819 MazG nucleotide pyrophosphohydrolase domain IAI05_05205 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IAI05_05205 PF14824 Sirohaem biosynthesis protein central IAI05_05205 PF10414 Sirohaem synthase dimerisation region IAI05_05225 PF00970 Oxidoreductase FAD-binding domain IAI05_05225 PF00175 Oxidoreductase NAD-binding domain IAI05_05245 PF02347 Glycine cleavage system P-protein IAI05_05250 PF01597 Glycine cleavage H-protein IAI05_05255 PF01571 Aminomethyltransferase folate-binding domain IAI05_05255 PF08669 Glycine cleavage T-protein C-terminal barrel domain IAI05_05280 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IAI05_05285 PF00849 RNA pseudouridylate synthase IAI05_05285 PF01479 S4 domain IAI05_05290 PF13419 Haloacid dehalogenase-like hydrolase IAI05_05305 PF01042 Endoribonuclease L-PSP IAI05_05310 PF00756 Putative esterase IAI05_05320 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 IAI05_05335 PF00578 AhpC/TSA family IAI05_05335 PF10417 C-terminal domain of 1-Cys peroxiredoxin IAI05_05345 PF02798 Glutathione S-transferase, N-terminal domain IAI05_05345 PF00043 Glutathione S-transferase, C-terminal domain IAI05_05360 PF13458 Periplasmic binding protein IAI05_05365 PF02653 Branched-chain amino acid transport system / permease component IAI05_05370 PF02653 Branched-chain amino acid transport system / permease component IAI05_05375 PF12399 Branched-chain amino acid ATP-binding cassette transporter IAI05_05375 PF00005 ABC transporter IAI05_05380 PF00005 ABC transporter IAI05_05385 PF00155 Aminotransferase class I and II IAI05_05390 PF03466 LysR substrate binding domain IAI05_05390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_05395 PF01968 Hydantoinase/oxoprolinase IAI05_05395 PF05378 Hydantoinase/oxoprolinase N-terminal region IAI05_05410 PF03328 HpcH/HpaI aldolase/citrate lyase family IAI05_05425 PF03358 NADPH-dependent FMN reductase IAI05_05430 PF03960 ArsC family IAI05_05435 PF01758 Sodium Bile acid symporter family IAI05_05450 PF00654 Voltage gated chloride channel IAI05_05455 PF03099 Biotin/lipoate A/B protein ligase family IAI05_05455 PF12706 Beta-lactamase superfamily domain IAI05_05460 PF01026 TatD related DNase IAI05_05465 PF09334 tRNA synthetases class I (M) IAI05_05465 PF08264 Anticodon-binding domain of tRNA IAI05_05470 PF09115 DNA polymerase III, delta subunit, C terminal IAI05_05475 PF02223 Thymidylate kinase IAI05_05480 PF07943 Penicillin-binding protein 5, C-terminal domain IAI05_05480 PF00768 D-alanyl-D-alanine carboxypeptidase IAI05_05485 PF03330 Lytic transglycolase IAI05_05485 PF05036 Sporulation related domain IAI05_05530 PF03989 DNA gyrase C-terminal domain, beta-propeller IAI05_05530 PF00521 DNA gyrase/topoisomerase IV, subunit A IAI05_05535 PF01914 MarC family integral membrane protein IAI05_05540 PF00571 CBS domain IAI05_05540 PF01743 Poly A polymerase head domain IAI05_05550 PF00436 Single-strand binding protein family IAI05_05555 PF17755 UvrA DNA-binding domain IAI05_05555 PF17760 UvrA interaction domain IAI05_05565 PF01207 Dihydrouridine synthase (Dus) IAI05_05580 PF01557 Fumarylacetoacetate (FAA) hydrolase family IAI05_05585 PF00132 Bacterial transferase hexapeptide (six repeats) IAI05_05595 PF00950 ABC 3 transport family IAI05_05600 PF00005 ABC transporter IAI05_05605 PF01297 Zinc-uptake complex component A periplasmic IAI05_05610 PF00356 Bacterial regulatory proteins, lacI family IAI05_05620 PF00248 Aldo/keto reductase family IAI05_05630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IAI05_05630 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain IAI05_05635 PF03597 Cytochrome oxidase maturation protein cbb3-type IAI05_05645 PF05751 FixH IAI05_05650 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase IAI05_05650 PF12801 4Fe-4S binding domain IAI05_05650 PF13746 4Fe-4S dicluster domain IAI05_05670 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP IAI05_05670 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IAI05_05685 PF00115 Cytochrome C and Quinol oxidase polypeptide I IAI05_05690 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase IAI05_05705 PF09278 MerR, DNA binding IAI05_05705 PF00376 MerR family regulatory protein IAI05_05710 PF00571 CBS domain IAI05_05710 PF01769 Divalent cation transporter IAI05_05710 PF03448 MgtE intracellular N domain IAI05_05715 PF00384 Molybdopterin oxidoreductase IAI05_05725 PF01327 Polypeptide deformylase IAI05_05740 PF00989 PAS fold IAI05_05740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_05740 PF00512 His Kinase A (phospho-acceptor) domain IAI05_05750 PF03099 Biotin/lipoate A/B protein ligase family IAI05_05755 PF00107 Zinc-binding dehydrogenase IAI05_05755 PF08240 Alcohol dehydrogenase GroES-like domain IAI05_05780 PF07549 SecD/SecF GG Motif IAI05_05780 PF02355 Protein export membrane protein IAI05_05785 PF02699 Preprotein translocase subunit IAI05_05795 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IAI05_05795 PF08240 Alcohol dehydrogenase GroES-like domain IAI05_05800 PF00440 Bacterial regulatory proteins, tetR family IAI05_05800 PF08360 QacR-like protein, C-terminal region IAI05_05805 PF00067 Cytochrome P450 IAI05_05815 PF00132 Bacterial transferase hexapeptide (six repeats) IAI05_05815 PF06426 Serine acetyltransferase, N-terminal IAI05_05820 PF00561 alpha/beta hydrolase fold IAI05_05830 PF01494 FAD binding domain IAI05_05835 PF01053 Cys/Met metabolism PLP-dependent enzyme IAI05_05840 PF00497 Bacterial extracellular solute-binding proteins, family 3 IAI05_05845 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_05850 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_05855 PF00005 ABC transporter IAI05_05870 PF01368 DHH family IAI05_05870 PF17768 RecJ OB domain IAI05_05870 PF02272 DHHA1 domain IAI05_05880 PF01842 ACT domain IAI05_05880 PF00742 Homoserine dehydrogenase IAI05_05880 PF03447 Homoserine dehydrogenase, NAD binding domain IAI05_05885 PF00155 Aminotransferase class I and II IAI05_05890 PF01156 Inosine-uridine preferring nucleoside hydrolase IAI05_05895 PF01925 Sulfite exporter TauE/SafE IAI05_05910 PF00107 Zinc-binding dehydrogenase IAI05_05910 PF08240 Alcohol dehydrogenase GroES-like domain IAI05_05915 PF00109 Beta-ketoacyl synthase, N-terminal domain IAI05_05915 PF02801 Beta-ketoacyl synthase, C-terminal domain IAI05_05925 PF07977 FabA-like domain IAI05_05930 PF00550 Phosphopantetheine attachment site IAI05_05935 PF04055 Radical SAM superfamily IAI05_05940 PF13545 Crp-like helix-turn-helix domain IAI05_05940 PF00027 Cyclic nucleotide-binding domain IAI05_05950 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus IAI05_05955 PF03749 Sugar fermentation stimulation protein RE domain IAI05_05955 PF17746 SfsA N-terminal OB domain IAI05_05960 PF00557 Metallopeptidase family M24 IAI05_05965 PF04002 RadC-like JAB domain IAI05_05980 PF01474 Class-II DAHP synthetase family IAI05_05995 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IAI05_05995 PF07992 Pyridine nucleotide-disulphide oxidoreductase IAI05_06005 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) IAI05_06010 PF13419 Haloacid dehalogenase-like hydrolase IAI05_06020 PF00206 Lyase IAI05_06020 PF10415 Fumarase C C-terminus IAI05_06030 PF06418 CTP synthase N-terminus IAI05_06030 PF00117 Glutamine amidotransferase class-I IAI05_06035 PF03840 Preprotein translocase SecG subunit IAI05_06040 PF00121 Triosephosphate isomerase IAI05_06050 PF01751 Toprim domain IAI05_06050 PF00204 DNA gyrase B IAI05_06050 PF00986 DNA gyrase B subunit, carboxyl terminus IAI05_06050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_06055 PF01370 NAD dependent epimerase/dehydratase family IAI05_06060 PF00574 Clp protease IAI05_06070 PF01022 Bacterial regulatory protein, arsR family IAI05_06075 PF13091 PLD-like domain IAI05_06080 PF00072 Response regulator receiver domain IAI05_06085 PF08669 Glycine cleavage T-protein C-terminal barrel domain IAI05_06085 PF01266 FAD dependent oxidoreductase IAI05_06085 PF01571 Aminomethyltransferase folate-binding domain IAI05_06085 PF16350 FAD dependent oxidoreductase central domain IAI05_06100 PF00924 Mechanosensitive ion channel IAI05_06100 PF12795 Mechanosensitive ion channel porin domain IAI05_06100 PF12794 Mechanosensitive ion channel inner membrane domain 1 IAI05_06165 PF00005 ABC transporter IAI05_06170 PF02405 Permease MlaE IAI05_06175 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IAI05_06175 PF13378 Enolase C-terminal domain-like IAI05_06185 PF01515 Phosphate acetyl/butaryl transferase IAI05_06185 PF03949 Malic enzyme, NAD binding domain IAI05_06185 PF00390 Malic enzyme, N-terminal domain IAI05_06195 PF00881 Nitroreductase family IAI05_06200 PF07676 WD40-like Beta Propeller Repeat IAI05_06210 PF02540 NAD synthase IAI05_06210 PF00795 Carbon-nitrogen hydrolase IAI05_06215 PF00884 Sulfatase IAI05_06225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IAI05_06225 PF07992 Pyridine nucleotide-disulphide oxidoreductase IAI05_06240 PF05698 Bacterial trigger factor protein (TF) C-terminus IAI05_06240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IAI05_06240 PF05697 Bacterial trigger factor protein (TF) IAI05_06260 PF01134 Glucose inhibited division protein A IAI05_06280 PF08240 Alcohol dehydrogenase GroES-like domain IAI05_06280 PF00107 Zinc-binding dehydrogenase IAI05_06290 PF00550 Phosphopantetheine attachment site IAI05_06295 PF13193 AMP-binding enzyme C-terminal domain IAI05_06295 PF00501 AMP-binding enzyme IAI05_06305 PF04715 Anthranilate synthase component I, N terminal region IAI05_06305 PF00117 Glutamine amidotransferase class-I IAI05_06305 PF00425 chorismate binding enzyme IAI05_06310 PF01702 Queuine tRNA-ribosyltransferase IAI05_06315 PF02547 Queuosine biosynthesis protein IAI05_06320 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IAI05_06325 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IAI05_06330 PF01467 Cytidylyltransferase-like IAI05_06345 PF02885 Glycosyl transferase family, helical bundle domain IAI05_06345 PF00591 Glycosyl transferase family, a/b domain IAI05_06350 PF00218 Indole-3-glycerol phosphate synthase IAI05_06355 PF01967 MoaC family IAI05_06360 PF03453 MoeA N-terminal region (domain I and II) IAI05_06360 PF03454 MoeA C-terminal region (domain IV) IAI05_06360 PF00994 Probable molybdopterin binding domain IAI05_06365 PF00990 Diguanylate cyclase, GGDEF domain IAI05_06365 PF17158 Membrane-associated sensor, integral membrane domain IAI05_06375 PF00999 Sodium/hydrogen exchanger family IAI05_06375 PF02254 TrkA-N domain IAI05_06385 PF04055 Radical SAM superfamily IAI05_06385 PF06463 Molybdenum Cofactor Synthesis C IAI05_06395 PF07690 Major Facilitator Superfamily IAI05_06400 PF12804 MobA-like NTP transferase domain IAI05_06405 PF03205 Molybdopterin guanine dinucleotide synthesis protein B IAI05_06410 PF01551 Peptidase family M23 IAI05_06420 PF01975 Survival protein SurE IAI05_06425 PF02403 Seryl-tRNA synthetase N-terminal domain IAI05_06425 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IAI05_06430 PF00902 Sec-independent protein translocase protein (TatC) IAI05_06435 PF02416 mttA/Hcf106 family IAI05_06440 PF02416 mttA/Hcf106 family IAI05_06445 PF04079 Segregation and condensation complex subunit ScpB IAI05_06450 PF02616 Segregation and condensation protein ScpA IAI05_06455 PF00933 Glycosyl hydrolase family 3 N terminal domain IAI05_06465 PF03485 Arginyl tRNA synthetase N terminal domain IAI05_06465 PF05746 DALR anticodon binding domain IAI05_06465 PF00750 tRNA synthetases class I (R) IAI05_06470 PF13286 Phosphohydrolase-associated domain IAI05_06470 PF01966 HD domain IAI05_06475 PF01521 Iron-sulphur cluster biosynthesis IAI05_06485 PF08238 Sel1 repeat IAI05_06495 PF08264 Anticodon-binding domain of tRNA IAI05_06495 PF00133 tRNA synthetases class I (I, L, M and V) IAI05_06495 PF10458 Valyl tRNA synthetase tRNA binding arm IAI05_06535 PF03358 NADPH-dependent FMN reductase IAI05_06540 PF00994 Probable molybdopterin binding domain IAI05_06540 PF18146 Damage-inducible protein CinA KH domain IAI05_06540 PF02464 Competence-damaged protein IAI05_06545 PF00582 Universal stress protein family IAI05_06550 PF00156 Phosphoribosyl transferase domain IAI05_06555 PF08471 Class II vitamin B12-dependent ribonucleotide reductase IAI05_06555 PF02867 Ribonucleotide reductase, barrel domain IAI05_06570 PF01566 Natural resistance-associated macrophage protein IAI05_06580 PF00005 ABC transporter IAI05_06580 PF00664 ABC transporter transmembrane region IAI05_06585 PF01594 AI-2E family transporter IAI05_06590 PF00583 Acetyltransferase (GNAT) family IAI05_06620 PF02824 TGS domain IAI05_06620 PF03129 Anticodon binding domain IAI05_06620 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IAI05_06620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IAI05_06630 PF01809 Putative membrane protein insertion efficiency factor IAI05_06640 PF01227 GTP cyclohydrolase I IAI05_06645 PF01502 Phosphoribosyl-AMP cyclohydrolase IAI05_06650 PF01734 Patatin-like phospholipase IAI05_06660 PF00571 CBS domain IAI05_06660 PF00478 IMP dehydrogenase / GMP reductase domain IAI05_06695 PF03313 Serine dehydratase alpha chain IAI05_06695 PF03315 Serine dehydratase beta chain IAI05_06720 PF02911 Formyl transferase, C-terminal domain IAI05_06720 PF00551 Formyl transferase IAI05_06730 PF03466 LysR substrate binding domain IAI05_06730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_06740 PF12833 Helix-turn-helix domain IAI05_06740 PF01965 DJ-1/PfpI family IAI05_06745 PF03853 YjeF-related protein N-terminus IAI05_06745 PF01256 Carbohydrate kinase IAI05_06755 PF00543 Nitrogen regulatory protein P-II IAI05_06760 PF03951 Glutamine synthetase, beta-Grasp domain IAI05_06760 PF00120 Glutamine synthetase, catalytic domain IAI05_06770 PF08755 Hemimethylated DNA-binding protein YccV like IAI05_06780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_06790 PF00892 EamA-like transporter family IAI05_06800 PF00271 Helicase conserved C-terminal domain IAI05_06800 PF02559 CarD-like/TRCF domain IAI05_06800 PF00270 DEAD/DEAH box helicase IAI05_06800 PF03461 TRCF domain IAI05_06800 PF17757 UvrB interaction domain IAI05_06810 PF00270 DEAD/DEAH box helicase IAI05_06810 PF00271 Helicase conserved C-terminal domain IAI05_06810 PF17191 RecG wedge domain IAI05_06825 PF01850 PIN domain IAI05_06840 PF01380 SIS domain IAI05_06845 PF00132 Bacterial transferase hexapeptide (six repeats) IAI05_06845 PF12804 MobA-like NTP transferase domain IAI05_06845 PF14602 Hexapeptide repeat of succinyl-transferase IAI05_06850 PF00392 Bacterial regulatory proteins, gntR family IAI05_06850 PF07729 FCD domain IAI05_06855 PF02608 ABC transporter substrate-binding protein PnrA-like IAI05_06860 PF02653 Branched-chain amino acid transport system / permease component IAI05_06865 PF02653 Branched-chain amino acid transport system / permease component IAI05_06870 PF00005 ABC transporter IAI05_06880 PF01494 FAD binding domain IAI05_06885 PF03547 Membrane transport protein IAI05_06890 PF02683 Cytochrome C biogenesis protein transmembrane region IAI05_06920 PF00313 'Cold-shock' DNA-binding domain IAI05_07115 PF11638 DnaA N-terminal domain IAI05_07115 PF00308 Bacterial dnaA protein IAI05_07115 PF08299 Bacterial dnaA protein helix-turn-helix IAI05_07125 PF01555 DNA methylase IAI05_07205 PF00436 Single-strand binding protein family IAI05_07370 PF05872 Bacterial protein of unknown function (DUF853) IAI05_07475 PF02195 ParB-like nuclease domain IAI05_07475 PF17762 HTH domain found in ParB protein IAI05_07495 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) IAI05_07515 PF01555 DNA methylase IAI05_07525 PF13298 DNA polymerase Ligase (LigD) IAI05_07525 PF04679 ATP dependent DNA ligase C terminal region IAI05_07525 PF01068 ATP dependent DNA ligase domain IAI05_07690 PF13356 Arm DNA-binding domain IAI05_07690 PF00589 Phage integrase family IAI05_07710 PF02687 FtsX-like permease family IAI05_07710 PF12704 MacB-like periplasmic core domain IAI05_07710 PF00005 ABC transporter IAI05_07715 PF12704 MacB-like periplasmic core domain IAI05_07715 PF00005 ABC transporter IAI05_07715 PF02687 FtsX-like permease family IAI05_07735 PF01521 Iron-sulphur cluster biosynthesis IAI05_07740 PF01883 Iron-sulfur cluster assembly protein IAI05_07745 PF00266 Aminotransferase class-V IAI05_07750 PF01458 Uncharacterized protein family (UPF0051) IAI05_07755 PF00005 ABC transporter IAI05_07760 PF01458 Uncharacterized protein family (UPF0051) IAI05_07765 PF00266 Aminotransferase class-V IAI05_07770 PF02129 X-Pro dipeptidyl-peptidase (S15 family) IAI05_07775 PF03702 Anhydro-N-acetylmuramic acid kinase IAI05_07780 PF00579 tRNA synthetases class I (W and Y) IAI05_07790 PF00578 AhpC/TSA family IAI05_07795 PF04305 Protein of unknown function (DUF455) IAI05_07800 PF01551 Peptidase family M23 IAI05_07800 PF08525 Opacity-associated protein A N-terminal motif IAI05_07800 PF01476 LysM domain IAI05_07805 PF00271 Helicase conserved C-terminal domain IAI05_07805 PF00270 DEAD/DEAH box helicase IAI05_07820 PF00834 Ribulose-phosphate 3 epimerase family IAI05_07830 PF00206 Lyase IAI05_07830 PF10397 Adenylosuccinate lyase C-terminus IAI05_07840 PF01259 SAICAR synthetase IAI05_07845 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase IAI05_07865 PF00392 Bacterial regulatory proteins, gntR family IAI05_07865 PF00155 Aminotransferase class I and II IAI05_07870 PF02769 AIR synthase related protein, C-terminal domain IAI05_07870 PF00586 AIR synthase related protein, N-terminal domain IAI05_07870 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain IAI05_07895 PF00462 Glutaredoxin IAI05_07900 PF07690 Major Facilitator Superfamily IAI05_07905 PF00459 Inositol monophosphatase family IAI05_07910 PF00459 Inositol monophosphatase family IAI05_07915 PF01171 PP-loop family IAI05_07920 PF04960 Glutaminase IAI05_07925 PF01479 S4 domain IAI05_07925 PF00163 Ribosomal protein S4/S9 N-terminal domain IAI05_07930 PF03741 Integral membrane protein TerC family IAI05_07940 PF00892 EamA-like transporter family IAI05_07945 PF01810 LysE type translocator IAI05_07955 PF01177 Asp/Glu/Hydantoin racemase IAI05_07960 PF00588 SpoU rRNA Methylase family IAI05_07970 PF00180 Isocitrate/isopropylmalate dehydrogenase IAI05_07980 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IAI05_07980 PF02272 DHHA1 domain IAI05_07980 PF01411 tRNA synthetases class II (A) IAI05_07985 PF00154 recA bacterial DNA recombination protein IAI05_07990 PF00294 pfkB family carbohydrate kinase IAI05_07995 PF04227 Indigoidine synthase A like protein IAI05_08000 PF00691 OmpA family IAI05_08000 PF01389 OmpA-like transmembrane domain IAI05_08005 PF00497 Bacterial extracellular solute-binding proteins, family 3 IAI05_08010 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_08015 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_08020 PF06233 Usg-like family IAI05_08025 PF08241 Methyltransferase domain IAI05_08030 PF09084 NMT1/THI5 like IAI05_08035 PF13404 AsnC-type helix-turn-helix domain IAI05_08035 PF01037 Lrp/AsnC ligand binding domain IAI05_08040 PF03167 Uracil DNA glycosylase superfamily IAI05_08050 PF00989 PAS fold IAI05_08050 PF00512 His Kinase A (phospho-acceptor) domain IAI05_08050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_08055 PF01219 Prokaryotic diacylglycerol kinase IAI05_08060 PF02277 Phosphoribosyltransferase IAI05_08065 PF02654 Cobalamin-5-phosphate synthase IAI05_08080 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IAI05_08085 PF01061 ABC-2 type transporter IAI05_08090 PF00005 ABC transporter IAI05_08095 PF01925 Sulfite exporter TauE/SafE IAI05_08105 PF08269 Cache domain IAI05_08105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_08115 PF16193 AAA C-terminal domain IAI05_08115 PF12002 MgsA AAA+ ATPase C terminal IAI05_08115 PF00004 ATPase family associated with various cellular activities (AAA) IAI05_08120 PF13180 PDZ domain IAI05_08120 PF00595 PDZ domain IAI05_08140 PF00920 Dehydratase family IAI05_08145 PF00174 Oxidoreductase molybdopterin binding domain IAI05_08150 PF01794 Ferric reductase like transmembrane component IAI05_08160 PF05675 Protein of unknown function (DUF817) IAI05_08165 PF01196 Ribosomal protein L17 IAI05_08170 PF01000 RNA polymerase Rpb3/RpoA insert domain IAI05_08170 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IAI05_08170 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IAI05_08175 PF00411 Ribosomal protein S11 IAI05_08180 PF00416 Ribosomal protein S13/S18 IAI05_08190 PF00344 SecY translocase IAI05_08195 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IAI05_08200 PF00327 Ribosomal protein L30p/L7e IAI05_08205 PF00333 Ribosomal protein S5, N-terminal domain IAI05_08205 PF03719 Ribosomal protein S5, C-terminal domain IAI05_08210 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IAI05_08215 PF00347 Ribosomal protein L6 IAI05_08220 PF00410 Ribosomal protein S8 IAI05_08225 PF00253 Ribosomal protein S14p/S29e IAI05_08230 PF00281 Ribosomal protein L5 IAI05_08230 PF00673 ribosomal L5P family C-terminus IAI05_08235 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IAI05_08235 PF00467 KOW motif IAI05_08240 PF00238 Ribosomal protein L14p/L23e IAI05_08245 PF00366 Ribosomal protein S17 IAI05_08250 PF00831 Ribosomal L29 protein IAI05_08255 PF00252 Ribosomal protein L16p/L10e IAI05_08260 PF00189 Ribosomal protein S3, C-terminal domain IAI05_08260 PF07650 KH domain IAI05_08265 PF00237 Ribosomal protein L22p/L17e IAI05_08270 PF00203 Ribosomal protein S19 IAI05_08275 PF03947 Ribosomal Proteins L2, C-terminal domain IAI05_08275 PF00181 Ribosomal Proteins L2, RNA binding domain IAI05_08280 PF00276 Ribosomal protein L23 IAI05_08285 PF00573 Ribosomal protein L4/L1 family IAI05_08290 PF00297 Ribosomal protein L3 IAI05_08295 PF00338 Ribosomal protein S10p/S20e IAI05_08300 PF03144 Elongation factor Tu domain 2 IAI05_08300 PF00009 Elongation factor Tu GTP binding domain IAI05_08300 PF03143 Elongation factor Tu C-terminal domain IAI05_08305 PF00679 Elongation factor G C-terminus IAI05_08305 PF14492 Elongation Factor G, domain II IAI05_08305 PF03764 Elongation factor G, domain IV IAI05_08305 PF03144 Elongation factor Tu domain 2 IAI05_08305 PF00009 Elongation factor Tu GTP binding domain IAI05_08310 PF00177 Ribosomal protein S7p/S5e IAI05_08315 PF00164 Ribosomal protein S12/S23 IAI05_08335 PF04998 RNA polymerase Rpb1, domain 5 IAI05_08335 PF04997 RNA polymerase Rpb1, domain 1 IAI05_08335 PF00623 RNA polymerase Rpb1, domain 2 IAI05_08335 PF04983 RNA polymerase Rpb1, domain 3 IAI05_08335 PF05000 RNA polymerase Rpb1, domain 4 IAI05_08340 PF04561 RNA polymerase Rpb2, domain 2 IAI05_08340 PF04565 RNA polymerase Rpb2, domain 3 IAI05_08340 PF04563 RNA polymerase beta subunit IAI05_08340 PF04560 RNA polymerase Rpb2, domain 7 IAI05_08340 PF10385 RNA polymerase beta subunit external 1 domain IAI05_08340 PF00562 RNA polymerase Rpb2, domain 6 IAI05_08345 PF00542 Ribosomal protein L7/L12 C-terminal domain IAI05_08345 PF16320 Ribosomal protein L7/L12 dimerisation domain IAI05_08350 PF00466 Ribosomal protein L10 IAI05_08355 PF00687 Ribosomal protein L1p/L10e family IAI05_08360 PF00298 Ribosomal protein L11, RNA binding domain IAI05_08360 PF03946 Ribosomal protein L11, N-terminal domain IAI05_08365 PF02357 Transcription termination factor nusG IAI05_08365 PF00467 KOW motif IAI05_08370 PF00584 SecE/Sec61-gamma subunits of protein translocation complex IAI05_08380 PF08485 Polysaccharide biosynthesis protein C-terminal IAI05_08380 PF02719 Polysaccharide biosynthesis protein IAI05_08385 PF03143 Elongation factor Tu C-terminal domain IAI05_08385 PF00009 Elongation factor Tu GTP binding domain IAI05_08385 PF03144 Elongation factor Tu domain 2 IAI05_08390 PF03741 Integral membrane protein TerC family IAI05_08395 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme IAI05_08415 PF00664 ABC transporter transmembrane region IAI05_08415 PF00005 ABC transporter IAI05_08455 PF04545 Sigma-70, region 4 IAI05_08455 PF04542 Sigma-70 region 2 IAI05_08465 PF00072 Response regulator receiver domain IAI05_08465 PF02954 Bacterial regulatory protein, Fis family IAI05_08465 PF00158 Sigma-54 interaction domain IAI05_08470 PF08769 Sporulation initiation factor Spo0A C terminal IAI05_08470 PF00072 Response regulator receiver domain IAI05_08475 PF00512 His Kinase A (phospho-acceptor) domain IAI05_08475 PF00497 Bacterial extracellular solute-binding proteins, family 3 IAI05_08475 PF00072 Response regulator receiver domain IAI05_08475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_08475 PF01627 Hpt domain IAI05_08480 PF00072 Response regulator receiver domain IAI05_08485 PF13426 PAS domain IAI05_08485 PF07536 HWE histidine kinase IAI05_08485 PF08447 PAS fold IAI05_08490 PF00072 Response regulator receiver domain IAI05_08495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_08495 PF00512 His Kinase A (phospho-acceptor) domain IAI05_08495 PF00360 Phytochrome region IAI05_08495 PF01590 GAF domain IAI05_08495 PF08446 PAS fold IAI05_08520 PF07411 Domain of unknown function (DUF1508) IAI05_08535 PF00293 NUDIX domain IAI05_08595 PF02796 Helix-turn-helix domain of resolvase IAI05_08595 PF00239 Resolvase, N terminal domain IAI05_08620 PF00589 Phage integrase family IAI05_08620 PF13356 Arm DNA-binding domain IAI05_08635 PF00588 SpoU rRNA Methylase family IAI05_08635 PF08032 RNA 2'-O ribose methyltransferase substrate binding IAI05_08640 PF03061 Thioesterase superfamily IAI05_08660 PF13460 NAD(P)H-binding IAI05_08665 PF01638 HxlR-like helix-turn-helix IAI05_08680 PF12344 Ultra-violet resistance protein B IAI05_08680 PF02151 UvrB/uvrC motif IAI05_08680 PF17757 UvrB interaction domain IAI05_08680 PF04851 Type III restriction enzyme, res subunit IAI05_08680 PF00271 Helicase conserved C-terminal domain IAI05_08690 PF00756 Putative esterase IAI05_08690 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IAI05_08710 PF00684 DnaJ central domain IAI05_08710 PF01556 DnaJ C terminal domain IAI05_08710 PF00226 DnaJ domain IAI05_08730 PF17151 Periplasmic sensor domain IAI05_08730 PF00990 Diguanylate cyclase, GGDEF domain IAI05_08740 PF00005 ABC transporter IAI05_08740 PF08402 TOBE domain IAI05_08750 PF01547 Bacterial extracellular solute-binding protein IAI05_08755 PF00155 Aminotransferase class I and II IAI05_08770 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain IAI05_08770 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain IAI05_08775 PF00440 Bacterial regulatory proteins, tetR family IAI05_08780 PF12833 Helix-turn-helix domain IAI05_08780 PF06719 AraC-type transcriptional regulator N-terminus IAI05_08785 PF00107 Zinc-binding dehydrogenase IAI05_08785 PF08240 Alcohol dehydrogenase GroES-like domain IAI05_08790 PF07992 Pyridine nucleotide-disulphide oxidoreductase IAI05_08795 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IAI05_08800 PF03472 Autoinducer binding domain IAI05_08800 PF00196 Bacterial regulatory proteins, luxR family IAI05_08805 PF14490 Helix-hairpin-helix containing domain IAI05_08805 PF13538 UvrD-like helicase C-terminal domain IAI05_08805 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain IAI05_08825 PF08281 Sigma-70, region 4 IAI05_08825 PF04542 Sigma-70 region 2 IAI05_08840 PF00248 Aldo/keto reductase family IAI05_08855 PF10369 Small subunit of acetolactate synthase IAI05_08860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IAI05_08860 PF00205 Thiamine pyrophosphate enzyme, central domain IAI05_08860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IAI05_08880 PF13302 Acetyltransferase (GNAT) domain IAI05_08890 PF13180 PDZ domain IAI05_08895 PF01145 SPFH domain / Band 7 family IAI05_08900 PF01145 SPFH domain / Band 7 family IAI05_08905 PF00186 Dihydrofolate reductase IAI05_08910 PF00303 Thymidylate synthase IAI05_08945 PF01565 FAD binding domain IAI05_08945 PF02913 FAD linked oxidases, C-terminal domain IAI05_08950 PF00873 AcrB/AcrD/AcrF family IAI05_08955 PF13533 Biotin-lipoyl like IAI05_08965 PF13361 UvrD-like helicase C-terminal domain IAI05_08965 PF00580 UvrD/REP helicase N-terminal domain IAI05_08990 PF00857 Isochorismatase family IAI05_09010 PF01321 Creatinase/Prolidase N-terminal domain IAI05_09010 PF00557 Metallopeptidase family M24 IAI05_09025 PF02630 SCO1/SenC IAI05_09035 PF01584 CheW-like domain IAI05_09045 PF00929 Exonuclease IAI05_09050 PF03466 LysR substrate binding domain IAI05_09050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_09060 PF00583 Acetyltransferase (GNAT) family IAI05_09065 PF01636 Phosphotransferase enzyme family IAI05_09070 PF00533 BRCA1 C Terminus (BRCT) domain IAI05_09070 PF03120 NAD-dependent DNA ligase OB-fold domain IAI05_09070 PF01653 NAD-dependent DNA ligase adenylation domain IAI05_09070 PF12826 Helix-hairpin-helix motif IAI05_09070 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IAI05_09075 PF02463 RecF/RecN/SMC N terminal domain IAI05_09080 PF13525 Outer membrane lipoprotein IAI05_09085 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IAI05_09090 PF00091 Tubulin/FtsZ family, GTPase domain IAI05_09090 PF12327 FtsZ family, C-terminal domain IAI05_09095 PF02491 SHS2 domain inserted in FTSA IAI05_09100 PF03799 Cell division protein FtsQ IAI05_09100 PF08478 POTRA domain, FtsQ-type IAI05_09105 PF01820 D-ala D-ala ligase N-terminus IAI05_09105 PF07478 D-ala D-ala ligase C-terminus IAI05_09110 PF00083 Sugar (and other) transporter IAI05_09110 PF07690 Major Facilitator Superfamily IAI05_09115 PF00563 EAL domain IAI05_09115 PF00990 Diguanylate cyclase, GGDEF domain IAI05_09115 PF03707 Bacterial signalling protein N terminal repeat IAI05_09120 PF01565 FAD binding domain IAI05_09120 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IAI05_09125 PF08245 Mur ligase middle domain IAI05_09125 PF01225 Mur ligase family, catalytic domain IAI05_09125 PF02875 Mur ligase family, glutamate ligase domain IAI05_09130 PF04101 Glycosyltransferase family 28 C-terminal domain IAI05_09130 PF03033 Glycosyltransferase family 28 N-terminal domain IAI05_09135 PF01098 Cell cycle protein IAI05_09140 PF08245 Mur ligase middle domain IAI05_09140 PF02875 Mur ligase family, glutamate ligase domain IAI05_09145 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 IAI05_09145 PF00953 Glycosyl transferase family 4 IAI05_09150 PF08245 Mur ligase middle domain IAI05_09150 PF02875 Mur ligase family, glutamate ligase domain IAI05_09150 PF01225 Mur ligase family, catalytic domain IAI05_09155 PF02875 Mur ligase family, glutamate ligase domain IAI05_09155 PF01225 Mur ligase family, catalytic domain IAI05_09155 PF08245 Mur ligase middle domain IAI05_09160 PF03717 Penicillin-binding Protein dimerisation domain IAI05_09160 PF00905 Penicillin binding protein transpeptidase domain IAI05_09170 PF01795 MraW methylase family IAI05_09175 PF02381 MraZ protein, putative antitoxin-like IAI05_09200 PF01510 N-acetylmuramoyl-L-alanine amidase IAI05_09205 PF05099 Tellurite resistance protein TerB IAI05_09205 PF00226 DnaJ domain IAI05_09210 PF00365 Phosphofructokinase IAI05_09230 PF13649 Methyltransferase domain IAI05_09235 PF01183 Glycosyl hydrolases family 25 IAI05_09245 PF02219 Methylenetetrahydrofolate reductase IAI05_09250 PF01209 ubiE/COQ5 methyltransferase family IAI05_09255 PF12848 ABC transporter IAI05_09255 PF00005 ABC transporter IAI05_09260 PF12146 Serine aminopeptidase, S33 IAI05_09265 PF02515 CoA-transferase family III IAI05_09270 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IAI05_09270 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IAI05_09270 PF00205 Thiamine pyrophosphate enzyme, central domain IAI05_09280 PF01042 Endoribonuclease L-PSP IAI05_09295 PF03734 L,D-transpeptidase catalytic domain IAI05_09295 PF01476 LysM domain IAI05_09300 PF07690 Major Facilitator Superfamily IAI05_09320 PF10609 NUBPL iron-transfer P-loop NTPase IAI05_09325 PF00465 Iron-containing alcohol dehydrogenase IAI05_09330 PF00171 Aldehyde dehydrogenase family IAI05_09335 PF00120 Glutamine synthetase, catalytic domain IAI05_09335 PF03951 Glutamine synthetase, beta-Grasp domain IAI05_09340 PF13520 Amino acid permease IAI05_09350 PF01418 Helix-turn-helix domain, rpiR family IAI05_09350 PF01380 SIS domain IAI05_09355 PF13416 Bacterial extracellular solute-binding protein IAI05_09370 PF00005 ABC transporter IAI05_09370 PF08402 TOBE domain IAI05_09375 PF00107 Zinc-binding dehydrogenase IAI05_09375 PF08240 Alcohol dehydrogenase GroES-like domain IAI05_09390 PF07690 Major Facilitator Superfamily IAI05_09395 PF00809 Pterin binding enzyme IAI05_09395 PF02310 B12 binding domain IAI05_09395 PF02965 Vitamin B12 dependent methionine synthase, activation domain IAI05_09395 PF02574 Homocysteine S-methyltransferase IAI05_09395 PF02607 B12 binding domain IAI05_09415 PF13505 Outer membrane protein beta-barrel domain IAI05_09440 PF04402 Protein of unknown function (DUF541) IAI05_09450 PF01894 Uncharacterised protein family UPF0047 IAI05_09455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_09455 PF01590 GAF domain IAI05_09455 PF08446 PAS fold IAI05_09455 PF00360 Phytochrome region IAI05_09455 PF00512 His Kinase A (phospho-acceptor) domain IAI05_09465 PF04546 Sigma-70, non-essential region IAI05_09465 PF04542 Sigma-70 region 2 IAI05_09465 PF04539 Sigma-70 region 3 IAI05_09465 PF04545 Sigma-70, region 4 IAI05_09465 PF03979 Sigma-70 factor, region 1.1 IAI05_09465 PF00140 Sigma-70 factor, region 1.2 IAI05_09470 PF08275 DNA primase catalytic core, N-terminal domain IAI05_09470 PF01807 CHC2 zinc finger IAI05_09470 PF10410 DnaB-helicase binding domain of primase IAI05_09470 PF08278 DNA primase DnaG DnaB-binding IAI05_09495 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IAI05_09495 PF00117 Glutamine amidotransferase class-I IAI05_09500 PF01554 MatE IAI05_09505 PF02743 Cache domain IAI05_09505 PF00672 HAMP domain IAI05_09505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_09515 PF04228 Putative neutral zinc metallopeptidase IAI05_09530 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IAI05_09530 PF02142 MGS-like domain IAI05_09530 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IAI05_09540 PF07694 5TMR of 5TMR-LYT IAI05_09540 PF00990 Diguanylate cyclase, GGDEF domain IAI05_09555 PF01272 Transcription elongation factor, GreA/GreB, C-term IAI05_09555 PF03449 Transcription elongation factor, N-terminal IAI05_09560 PF00534 Glycosyl transferases group 1 IAI05_09565 PF01037 Lrp/AsnC ligand binding domain IAI05_09570 PF07992 Pyridine nucleotide-disulphide oxidoreductase IAI05_09575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_09575 PF03466 LysR substrate binding domain IAI05_09585 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IAI05_09600 PF03466 LysR substrate binding domain IAI05_09600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_09610 PF01699 Sodium/calcium exchanger protein IAI05_09615 PF00155 Aminotransferase class I and II IAI05_09620 PF00563 EAL domain IAI05_09620 PF05231 MASE1 IAI05_09635 PF00313 'Cold-shock' DNA-binding domain IAI05_09640 PF00753 Metallo-beta-lactamase superfamily IAI05_09650 PF12802 MarR family IAI05_09655 PF00486 Transcriptional regulatory protein, C terminal IAI05_09655 PF00072 Response regulator receiver domain IAI05_09660 PF00512 His Kinase A (phospho-acceptor) domain IAI05_09660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_09660 PF00672 HAMP domain IAI05_09665 PF01588 Putative tRNA binding domain IAI05_09670 PF14748 Pyrroline-5-carboxylate reductase dimerisation IAI05_09670 PF03807 NADP oxidoreductase coenzyme F420-dependent IAI05_09685 PF01790 Prolipoprotein diacylglyceryl transferase IAI05_09695 PF02578 Multi-copper polyphenol oxidoreductase laccase IAI05_09710 PF14572 Phosphoribosyl synthetase-associated domain IAI05_09710 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IAI05_09720 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase IAI05_09730 PF00535 Glycosyl transferase family 2 IAI05_09735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_09735 PF02203 Tar ligand binding domain homologue IAI05_09735 PF00672 HAMP domain IAI05_09740 PF00171 Aldehyde dehydrogenase family IAI05_09745 PF02954 Bacterial regulatory protein, Fis family IAI05_09750 PF00990 Diguanylate cyclase, GGDEF domain IAI05_09750 PF03707 Bacterial signalling protein N terminal repeat IAI05_09750 PF13188 PAS domain IAI05_09750 PF00563 EAL domain IAI05_09755 PF14693 Ribosomal protein TL5, C-terminal domain IAI05_09755 PF01386 Ribosomal L25p family IAI05_09760 PF08448 PAS fold IAI05_09760 PF08447 PAS fold IAI05_09760 PF00990 Diguanylate cyclase, GGDEF domain IAI05_09760 PF00563 EAL domain IAI05_09770 PF01195 Peptidyl-tRNA hydrolase IAI05_09780 PF02617 ATP-dependent Clp protease adaptor protein ClpS IAI05_09785 PF01926 50S ribosome-binding GTPase IAI05_09785 PF06071 Protein of unknown function (DUF933) IAI05_09805 PF00156 Phosphoribosyl transferase domain IAI05_09815 PF00032 Cytochrome b(C-terminal)/b6/petD IAI05_09815 PF00033 Cytochrome b/b6/petB IAI05_09815 PF02167 Cytochrome C1 family IAI05_09820 PF00033 Cytochrome b/b6/petB IAI05_09820 PF00032 Cytochrome b(C-terminal)/b6/petD IAI05_09825 PF00355 Rieske [2Fe-2S] domain IAI05_09825 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IAI05_09830 PF03372 Endonuclease/Exonuclease/phosphatase family IAI05_09835 PF00005 ABC transporter IAI05_09835 PF00664 ABC transporter transmembrane region IAI05_09840 PF00664 ABC transporter transmembrane region IAI05_09840 PF00005 ABC transporter IAI05_09845 PF00149 Calcineurin-like phosphoesterase IAI05_09850 PF00588 SpoU rRNA Methylase family IAI05_09855 PF02690 Na+/Pi-cotransporter IAI05_09865 PF01218 Coproporphyrinogen III oxidase IAI05_09880 PF13735 tRNA nucleotidyltransferase domain 2 putative IAI05_09880 PF01743 Poly A polymerase head domain IAI05_09880 PF12627 Probable RNA and SrmB- binding site of polymerase A IAI05_09885 PF00293 NUDIX domain IAI05_09895 PF07726 ATPase family associated with various cellular activities (AAA) IAI05_09895 PF17863 AAA lid domain IAI05_09915 PF00583 Acetyltransferase (GNAT) family IAI05_09920 PF03466 LysR substrate binding domain IAI05_09920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_09930 PF07690 Major Facilitator Superfamily IAI05_09940 PF13409 Glutathione S-transferase, N-terminal domain IAI05_09945 PF00293 NUDIX domain IAI05_09955 PF00682 HMGL-like IAI05_09955 PF08502 LeuA allosteric (dimerisation) domain IAI05_09960 PF03594 Benzoate membrane transport protein IAI05_09975 PF04542 Sigma-70 region 2 IAI05_09975 PF04545 Sigma-70, region 4 IAI05_09985 PF00574 Clp protease IAI05_09990 PF04955 HupE / UreJ protein IAI05_10000 PF14489 QueF-like protein IAI05_10005 PF01545 Cation efflux family IAI05_10005 PF16916 Dimerisation domain of Zinc Transporter IAI05_10015 PF13458 Periplasmic binding protein IAI05_10025 PF01022 Bacterial regulatory protein, arsR family IAI05_10030 PF00571 CBS domain IAI05_10030 PF00005 ABC transporter IAI05_10035 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_10040 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IAI05_10050 PF00265 Thymidine kinase IAI05_10055 PF00127 Copper binding proteins, plastocyanin/azurin family IAI05_10065 PF03472 Autoinducer binding domain IAI05_10065 PF00196 Bacterial regulatory proteins, luxR family IAI05_10070 PF03350 Uncharacterized protein family, UPF0114 IAI05_10075 PF07715 TonB-dependent Receptor Plug Domain IAI05_10075 PF04886 PT repeat IAI05_10075 PF00593 TonB dependent receptor IAI05_10085 PF04715 Anthranilate synthase component I, N terminal region IAI05_10085 PF00117 Glutamine amidotransferase class-I IAI05_10085 PF00425 chorismate binding enzyme IAI05_10095 PF11871 Domain of unknown function (DUF3391) IAI05_10095 PF01966 HD domain IAI05_10100 PF13382 Adenine deaminase C-terminal domain IAI05_10100 PF01979 Amidohydrolase family IAI05_10105 PF00583 Acetyltransferase (GNAT) family IAI05_10110 PF00128 Alpha amylase, catalytic domain IAI05_10115 PF00294 pfkB family carbohydrate kinase IAI05_10135 PF01926 50S ribosome-binding GTPase IAI05_10135 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IAI05_10155 PF05992 SbmA/BacA-like family IAI05_10165 PF00557 Metallopeptidase family M24 IAI05_10180 PF00111 2Fe-2S iron-sulfur cluster binding domain IAI05_10180 PF01799 [2Fe-2S] binding domain IAI05_10185 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain IAI05_10185 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase IAI05_10195 PF03466 LysR substrate binding domain IAI05_10195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_10210 PF01979 Amidohydrolase family IAI05_10220 PF01070 FMN-dependent dehydrogenase IAI05_10225 PF00893 Small Multidrug Resistance protein IAI05_10230 PF00440 Bacterial regulatory proteins, tetR family IAI05_10230 PF17932 Tetracyclin repressor-like, C-terminal domain IAI05_10235 PF07943 Penicillin-binding protein 5, C-terminal domain IAI05_10235 PF00768 D-alanyl-D-alanine carboxypeptidase IAI05_10245 PF00576 HIUase/Transthyretin family IAI05_10250 PF04115 Ureidoglycolate lyase IAI05_10265 PF01014 Uricase IAI05_10265 PF09349 OHCU decarboxylase IAI05_10275 PF06299 Protein of unknown function (DUF1045) IAI05_10280 PF01266 FAD dependent oxidoreductase IAI05_10285 PF01266 FAD dependent oxidoreductase IAI05_10285 PF05430 S-adenosyl-L-methionine-dependent methyltransferase IAI05_10290 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IAI05_10290 PF00672 HAMP domain IAI05_10290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_10290 PF00512 His Kinase A (phospho-acceptor) domain IAI05_10290 PF00072 Response regulator receiver domain IAI05_10290 PF01627 Hpt domain IAI05_10295 PF00270 DEAD/DEAH box helicase IAI05_10295 PF00271 Helicase conserved C-terminal domain IAI05_10305 PF07681 DoxX IAI05_10310 PF01476 LysM domain IAI05_10310 PF03734 L,D-transpeptidase catalytic domain IAI05_10320 PF14403 Circularly permuted ATP-grasp type 2 IAI05_10325 PF14403 Circularly permuted ATP-grasp type 2 IAI05_10325 PF04168 A predicted alpha-helical domain with a conserved ER motif. IAI05_10330 PF01841 Transglutaminase-like superfamily IAI05_10330 PF08379 Bacterial transglutaminase-like N-terminal region IAI05_10350 PF00300 Histidine phosphatase superfamily (branch 1) IAI05_10360 PF02653 Branched-chain amino acid transport system / permease component IAI05_10365 PF00005 ABC transporter IAI05_10370 PF13407 Periplasmic binding protein domain IAI05_10375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_10375 PF03466 LysR substrate binding domain IAI05_10405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_10405 PF00672 HAMP domain IAI05_10410 PF07690 Major Facilitator Superfamily IAI05_10420 PF00809 Pterin binding enzyme IAI05_10420 PF02965 Vitamin B12 dependent methionine synthase, activation domain IAI05_10420 PF02310 B12 binding domain IAI05_10420 PF02607 B12 binding domain IAI05_10420 PF02574 Homocysteine S-methyltransferase IAI05_10425 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_10430 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_10435 PF00497 Bacterial extracellular solute-binding proteins, family 3 IAI05_10440 PF00005 ABC transporter IAI05_10460 PF00331 Glycosyl hydrolase family 10 IAI05_10465 PF00535 Glycosyl transferase family 2 IAI05_10480 PF03808 Glycosyl transferase WecB/TagA/CpsF family IAI05_10495 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IAI05_10495 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IAI05_10495 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IAI05_10495 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IAI05_10500 PF01152 Bacterial-like globin IAI05_10520 PF00440 Bacterial regulatory proteins, tetR family IAI05_10520 PF08362 YcdC-like protein, C-terminal region IAI05_10525 PF07687 Peptidase dimerisation domain IAI05_10525 PF01546 Peptidase family M20/M25/M40 IAI05_10530 PF01979 Amidohydrolase family IAI05_10535 PF00293 NUDIX domain IAI05_10540 PF00005 ABC transporter IAI05_10545 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_10550 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_10565 PF00873 AcrB/AcrD/AcrF family IAI05_10595 PF02492 CobW/HypB/UreG, nucleotide-binding domain IAI05_10600 PF01730 UreF IAI05_10605 PF02814 UreE urease accessory protein, N-terminal domain IAI05_10605 PF05194 UreE urease accessory protein, C-terminal domain IAI05_10610 PF08534 Redoxin IAI05_10620 PF01979 Amidohydrolase family IAI05_10620 PF00449 Urease alpha-subunit, N-terminal domain IAI05_10630 PF07007 Lysozyme inhibitor LprI IAI05_10640 PF00699 Urease beta subunit IAI05_10645 PF06906 Protein of unknown function (DUF1272) IAI05_10650 PF00547 Urease, gamma subunit IAI05_10655 PF01774 UreD urease accessory protein IAI05_10665 PF00005 ABC transporter IAI05_10670 PF12399 Branched-chain amino acid ATP-binding cassette transporter IAI05_10670 PF00005 ABC transporter IAI05_10680 PF02653 Branched-chain amino acid transport system / permease component IAI05_10690 PF10931 Protein of unknown function (DUF2735) IAI05_10695 PF00120 Glutamine synthetase, catalytic domain IAI05_10695 PF03951 Glutamine synthetase, beta-Grasp domain IAI05_10705 PF18415 Histidine kinase receptor ArcB trans-membrane domain IAI05_10705 PF00989 PAS fold IAI05_10705 PF00072 Response regulator receiver domain IAI05_10705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_10705 PF00512 His Kinase A (phospho-acceptor) domain IAI05_10705 PF01627 Hpt domain IAI05_10710 PF00072 Response regulator receiver domain IAI05_10720 PF01522 Polysaccharide deacetylase IAI05_10720 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain IAI05_10725 PF13458 Periplasmic binding protein IAI05_10735 PF00005 ABC transporter IAI05_10740 PF12399 Branched-chain amino acid ATP-binding cassette transporter IAI05_10740 PF00005 ABC transporter IAI05_10745 PF11862 Domain of unknown function (DUF3382) IAI05_10745 PF02653 Branched-chain amino acid transport system / permease component IAI05_10750 PF02653 Branched-chain amino acid transport system / permease component IAI05_10755 PF00459 Inositol monophosphatase family IAI05_10785 PF00486 Transcriptional regulatory protein, C terminal IAI05_10785 PF00072 Response regulator receiver domain IAI05_10805 PF10090 Histidine phosphotransferase C-terminal domain IAI05_10820 PF00588 SpoU rRNA Methylase family IAI05_10830 PF00849 RNA pseudouridylate synthase IAI05_10840 PF04542 Sigma-70 region 2 IAI05_10840 PF00140 Sigma-70 factor, region 1.2 IAI05_10840 PF04545 Sigma-70, region 4 IAI05_10850 PF00709 Adenylosuccinate synthetase IAI05_10875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IAI05_10885 PF03167 Uracil DNA glycosylase superfamily IAI05_10890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IAI05_10895 PF04304 Protein of unknown function (DUF454) IAI05_10900 PF00005 ABC transporter IAI05_10905 PF01032 FecCD transport family IAI05_10910 PF01497 Periplasmic binding protein IAI05_10920 PF06228 Haem utilisation ChuX/HutX IAI05_10935 PF13443 Cro/C1-type HTH DNA-binding domain IAI05_10945 PF00551 Formyl transferase IAI05_10950 PF05973 Phage derived protein Gp49-like (DUF891) IAI05_10960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_10960 PF00672 HAMP domain IAI05_10960 PF00512 His Kinase A (phospho-acceptor) domain IAI05_10965 PF00072 Response regulator receiver domain IAI05_10965 PF00486 Transcriptional regulatory protein, C terminal IAI05_10975 PF03401 Tripartite tricarboxylate transporter family receptor IAI05_10985 PF01970 Tripartite tricarboxylate transporter TctA family IAI05_11000 PF01032 FecCD transport family IAI05_11005 PF01032 FecCD transport family IAI05_11010 PF00005 ABC transporter IAI05_11015 PF00210 Ferritin-like domain IAI05_11030 PF00672 HAMP domain IAI05_11030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_11035 PF00248 Aldo/keto reductase family IAI05_11040 PF07690 Major Facilitator Superfamily IAI05_11045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_11045 PF03466 LysR substrate binding domain IAI05_11050 PF03466 LysR substrate binding domain IAI05_11050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_11055 PF07859 alpha/beta hydrolase fold IAI05_11060 PF13533 Biotin-lipoyl like IAI05_11065 PF00873 AcrB/AcrD/AcrF family IAI05_11080 PF13396 Phospholipase_D-nuclease N-terminal IAI05_11080 PF13091 PLD-like domain IAI05_11085 PF08543 Phosphomethylpyrimidine kinase IAI05_11090 PF00484 Carbonic anhydrase IAI05_11100 PF01118 Semialdehyde dehydrogenase, NAD binding domain IAI05_11100 PF02774 Semialdehyde dehydrogenase, dimerisation domain IAI05_11110 PF00083 Sugar (and other) transporter IAI05_11115 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IAI05_11115 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IAI05_11115 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IAI05_11120 PF02233 NAD(P) transhydrogenase beta subunit IAI05_11125 PF01613 Flavin reductase like domain IAI05_11130 PF00881 Nitroreductase family IAI05_11135 PF00561 alpha/beta hydrolase fold IAI05_11140 PF01042 Endoribonuclease L-PSP IAI05_11145 PF00857 Isochorismatase family IAI05_11150 PF00296 Luciferase-like monooxygenase IAI05_11155 PF01126 Heme oxygenase IAI05_11160 PF00701 Dihydrodipicolinate synthetase family IAI05_11165 PF00392 Bacterial regulatory proteins, gntR family IAI05_11165 PF07729 FCD domain IAI05_11175 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_11180 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_11185 PF17912 MalK OB fold domain IAI05_11185 PF00005 ABC transporter IAI05_11185 PF03459 TOBE domain IAI05_11190 PF00294 pfkB family carbohydrate kinase IAI05_11195 PF03576 Peptidase family S58 IAI05_11200 PF01063 Amino-transferase class IV IAI05_11205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_11205 PF03466 LysR substrate binding domain IAI05_11210 PF00144 Beta-lactamase IAI05_11215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_11215 PF00005 ABC transporter IAI05_11220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_11220 PF00005 ABC transporter IAI05_11225 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_11225 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_11230 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_11235 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_11240 PF01244 Membrane dipeptidase (Peptidase family M19) IAI05_11250 PF03706 Lysylphosphatidylglycerol synthase TM region IAI05_11250 PF09924 Uncharacterised conserved protein (DUF2156) IAI05_11265 PF07690 Major Facilitator Superfamily IAI05_11275 PF00775 Dioxygenase IAI05_11275 PF04444 Catechol dioxygenase N terminus IAI05_11280 PF00465 Iron-containing alcohol dehydrogenase IAI05_11285 PF04909 Amidohydrolase IAI05_11290 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IAI05_11290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IAI05_11295 PF01613 Flavin reductase like domain IAI05_11315 PF00512 His Kinase A (phospho-acceptor) domain IAI05_11315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_11320 PF00072 Response regulator receiver domain IAI05_11320 PF00486 Transcriptional regulatory protein, C terminal IAI05_11330 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IAI05_11335 PF08402 TOBE domain IAI05_11335 PF00005 ABC transporter IAI05_11340 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_11355 PF00072 Response regulator receiver domain IAI05_11355 PF00486 Transcriptional regulatory protein, C terminal IAI05_11360 PF08448 PAS fold IAI05_11360 PF00512 His Kinase A (phospho-acceptor) domain IAI05_11360 PF00072 Response regulator receiver domain IAI05_11360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_11360 PF13188 PAS domain IAI05_11365 PF00202 Aminotransferase class-III IAI05_11370 PF03466 LysR substrate binding domain IAI05_11370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_11375 PF00313 'Cold-shock' DNA-binding domain IAI05_11415 PF01259 SAICAR synthetase IAI05_11420 PF00440 Bacterial regulatory proteins, tetR family IAI05_11425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IAI05_11425 PF00529 HlyD membrane-fusion protein of T1SS IAI05_11430 PF00873 AcrB/AcrD/AcrF family IAI05_11435 PF02321 Outer membrane efflux protein IAI05_11440 PF01132 Elongation factor P (EF-P) OB domain IAI05_11440 PF09285 Elongation factor P, C-terminal IAI05_11440 PF08207 Elongation factor P (EF-P) KOW-like domain IAI05_11445 PF00152 tRNA synthetases class II (D, K and N) IAI05_11450 PF04055 Radical SAM superfamily IAI05_11450 PF12544 Lysine-2,3-aminomutase IAI05_11465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_11465 PF03466 LysR substrate binding domain IAI05_11470 PF01266 FAD dependent oxidoreductase IAI05_11480 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_11485 PF03459 TOBE domain IAI05_11485 PF00005 ABC transporter IAI05_11495 PF03576 Peptidase family S58 IAI05_11500 PF05690 Thiazole biosynthesis protein ThiG IAI05_11510 PF01266 FAD dependent oxidoreductase IAI05_11515 PF01964 Radical SAM ThiC family IAI05_11515 PF13667 ThiC-associated domain IAI05_11520 PF00550 Phosphopantetheine attachment site IAI05_11550 PF00664 ABC transporter transmembrane region IAI05_11550 PF00005 ABC transporter IAI05_11555 PF00027 Cyclic nucleotide-binding domain IAI05_11555 PF13545 Crp-like helix-turn-helix domain IAI05_11565 PF00672 HAMP domain IAI05_11565 PF00211 Adenylate and Guanylate cyclase catalytic domain IAI05_11575 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IAI05_11575 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IAI05_11575 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IAI05_11580 PF00534 Glycosyl transferases group 1 IAI05_11580 PF13439 Glycosyltransferase Family 4 IAI05_11595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_11595 PF00005 ABC transporter IAI05_11600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_11605 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_11610 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_11610 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_11625 PF03033 Glycosyltransferase family 28 N-terminal domain IAI05_11625 PF04101 Glycosyltransferase family 28 C-terminal domain IAI05_11630 PF03932 CutC family IAI05_11635 PF07690 Major Facilitator Superfamily IAI05_11645 PF02838 Glycosyl hydrolase family 20, domain 2 IAI05_11645 PF00728 Glycosyl hydrolase family 20, catalytic domain IAI05_11655 PF01380 SIS domain IAI05_11655 PF01418 Helix-turn-helix domain, rpiR family IAI05_11665 PF17912 MalK OB fold domain IAI05_11665 PF00005 ABC transporter IAI05_11670 PF01547 Bacterial extracellular solute-binding protein IAI05_11675 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_11680 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_11695 PF00392 Bacterial regulatory proteins, gntR family IAI05_11695 PF07702 UTRA domain IAI05_11700 PF01380 SIS domain IAI05_11705 PF01979 Amidohydrolase family IAI05_11710 PF00480 ROK family IAI05_11715 PF01494 FAD binding domain IAI05_11720 PF01569 PAP2 superfamily IAI05_11725 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain IAI05_11725 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase IAI05_11725 PF13288 DXP reductoisomerase C-terminal domain IAI05_11730 PF00155 Aminotransferase class I and II IAI05_11740 PF17243 POTRA domain TamA domain 1 IAI05_11740 PF07244 Surface antigen variable number repeat IAI05_11740 PF01103 Surface antigen IAI05_11750 PF01584 CheW-like domain IAI05_11755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_11755 PF08447 PAS fold IAI05_11755 PF13426 PAS domain IAI05_11760 PF02634 FdhD/NarQ family IAI05_11765 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IAI05_11770 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IAI05_11770 PF02874 ATP synthase alpha/beta family, beta-barrel domain IAI05_11775 PF00231 ATP synthase IAI05_11780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IAI05_11780 PF02874 ATP synthase alpha/beta family, beta-barrel domain IAI05_11780 PF00306 ATP synthase alpha/beta chain, C terminal domain IAI05_11785 PF00213 ATP synthase delta (OSCP) subunit IAI05_11795 PF18319 PriA DNA helicase Cys-rich region (CRR) domain IAI05_11795 PF18074 Primosomal protein N C-terminal domain IAI05_11795 PF17764 3′ DNA-binding domain (3′BD) IAI05_11795 PF00270 DEAD/DEAH box helicase IAI05_11800 PF02899 Phage integrase, N-terminal SAM-like domain IAI05_11800 PF00589 Phage integrase family IAI05_11820 PF07992 Pyridine nucleotide-disulphide oxidoreductase IAI05_11820 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IAI05_11825 PF01810 LysE type translocator IAI05_11835 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IAI05_11835 PF00364 Biotin-requiring enzyme IAI05_11835 PF02817 e3 binding domain IAI05_11840 PF02779 Transketolase, pyrimidine binding domain IAI05_11840 PF16078 2-oxoglutarate dehydrogenase N-terminus IAI05_11840 PF00676 Dehydrogenase E1 component IAI05_11840 PF16870 2-oxoglutarate dehydrogenase C-terminal IAI05_11845 PF00549 CoA-ligase IAI05_11845 PF02629 CoA binding domain IAI05_11850 PF00549 CoA-ligase IAI05_11850 PF08442 ATP-grasp domain IAI05_11855 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IAI05_11855 PF00056 lactate/malate dehydrogenase, NAD binding domain IAI05_11860 PF03969 AFG1-like ATPase IAI05_11865 PF02974 Protease inhibitor Inh IAI05_11870 PF13237 4Fe-4S dicluster domain IAI05_11870 PF13085 2Fe-2S iron-sulfur cluster binding domain IAI05_11875 PF00890 FAD binding domain IAI05_11875 PF02910 Fumarate reductase flavoprotein C-term IAI05_11885 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IAI05_11910 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IAI05_11910 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IAI05_11915 PF00814 Glycoprotease family IAI05_11920 PF03900 Porphobilinogen deaminase, C-terminal domain IAI05_11920 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain IAI05_11945 PF00117 Glutamine amidotransferase class-I IAI05_11955 PF02325 YGGT family IAI05_11960 PF02594 Uncharacterised ACR, YggU family COG1872 IAI05_11965 PF00719 Inorganic pyrophosphatase IAI05_11975 PF00679 Elongation factor G C-terminus IAI05_11975 PF03144 Elongation factor Tu domain 2 IAI05_11975 PF00009 Elongation factor Tu GTP binding domain IAI05_11980 PF01432 Peptidase family M3 IAI05_11985 PF01047 MarR family IAI05_11990 PF07690 Major Facilitator Superfamily IAI05_11995 PF00764 Arginosuccinate synthase IAI05_12000 PF00106 short chain dehydrogenase IAI05_12005 PF01810 LysE type translocator IAI05_12010 PF00005 ABC transporter IAI05_12015 PF02653 Branched-chain amino acid transport system / permease component IAI05_12025 PF04055 Radical SAM superfamily IAI05_12040 PF01329 Pterin 4 alpha carbinolamine dehydratase IAI05_12045 PF01451 Low molecular weight phosphotyrosine protein phosphatase IAI05_12050 PF02834 LigT like Phosphoesterase IAI05_12055 PF13472 GDSL-like Lipase/Acylhydrolase family IAI05_12060 PF00005 ABC transporter IAI05_12070 PF01027 Inhibitor of apoptosis-promoting Bax1 IAI05_12085 PF00694 Aconitase C-terminal domain IAI05_12085 PF00330 Aconitase family (aconitate hydratase) IAI05_12090 PF00005 ABC transporter IAI05_12095 PF03379 CcmB protein IAI05_12100 PF01578 Cytochrome C assembly protein IAI05_12110 PF08534 Redoxin IAI05_12115 PF00990 Diguanylate cyclase, GGDEF domain IAI05_12120 PF10755 Protein of unknown function (DUF2585) IAI05_12125 PF04279 Intracellular septation protein A IAI05_12130 PF02881 SRP54-type protein, helical bundle domain IAI05_12130 PF00448 SRP54-type protein, GTPase domain IAI05_12135 PF04055 Radical SAM superfamily IAI05_12135 PF00919 Uncharacterized protein family UPF0004 IAI05_12140 PF01678 Diaminopimelate epimerase IAI05_12145 PF12706 Beta-lactamase superfamily domain IAI05_12155 PF00448 SRP54-type protein, GTPase domain IAI05_12155 PF02881 SRP54-type protein, helical bundle domain IAI05_12155 PF02978 Signal peptide binding domain IAI05_12160 PF02153 Prephenate dehydrogenase IAI05_12160 PF01817 Chorismate mutase type II IAI05_12165 PF00886 Ribosomal protein S16 IAI05_12170 PF05239 PRC-barrel domain IAI05_12170 PF01782 RimM N-terminal domain IAI05_12175 PF01746 tRNA (Guanine-1)-methyltransferase IAI05_12185 PF01245 Ribosomal protein L19 IAI05_12190 PF00005 ABC transporter IAI05_12190 PF00664 ABC transporter transmembrane region IAI05_12195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IAI05_12195 PF00529 HlyD membrane-fusion protein of T1SS IAI05_12205 PF07690 Major Facilitator Superfamily IAI05_12210 PF00330 Aconitase family (aconitate hydratase) IAI05_12225 PF01435 Peptidase family M48 IAI05_12230 PF00005 ABC transporter IAI05_12235 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_12240 PF01547 Bacterial extracellular solute-binding protein IAI05_12250 PF00005 ABC transporter IAI05_12250 PF16326 ABC transporter C-terminal domain IAI05_12260 PF04204 Homoserine O-succinyltransferase IAI05_12265 PF01263 Aldose 1-epimerase IAI05_12270 PF00912 Transglycosylase IAI05_12275 PF00348 Polyprenyl synthetase IAI05_12280 PF00691 OmpA family IAI05_12280 PF13488 Glycine zipper IAI05_12285 PF04551 GcpE protein IAI05_12290 PF07690 Major Facilitator Superfamily IAI05_12295 PF08220 DeoR-like helix-turn-helix domain IAI05_12295 PF00455 DeoR C terminal sensor domain IAI05_12300 PF02785 Biotin carboxylase C-terminal domain IAI05_12300 PF00289 Biotin carboxylase, N-terminal domain IAI05_12300 PF02436 Conserved carboxylase domain IAI05_12300 PF00364 Biotin-requiring enzyme IAI05_12300 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IAI05_12300 PF00682 HMGL-like IAI05_12305 PF00072 Response regulator receiver domain IAI05_12305 PF00196 Bacterial regulatory proteins, luxR family IAI05_12310 PF00005 ABC transporter IAI05_12310 PF00664 ABC transporter transmembrane region IAI05_12315 PF10091 Putative glucoamylase IAI05_12315 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain IAI05_12315 PF06165 Glycosyltransferase family 36 IAI05_12320 PF07687 Peptidase dimerisation domain IAI05_12320 PF01546 Peptidase family M20/M25/M40 IAI05_12330 PF01266 FAD dependent oxidoreductase IAI05_12335 PF00291 Pyridoxal-phosphate dependent enzyme IAI05_12340 PF00920 Dehydratase family IAI05_12345 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IAI05_12345 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IAI05_12350 PF01370 NAD dependent epimerase/dehydratase family IAI05_12355 PF02913 FAD linked oxidases, C-terminal domain IAI05_12355 PF01565 FAD binding domain IAI05_12360 PF07729 FCD domain IAI05_12360 PF00392 Bacterial regulatory proteins, gntR family IAI05_12370 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IAI05_12375 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IAI05_12380 PF03480 Bacterial extracellular solute-binding protein, family 7 IAI05_12385 PF13193 AMP-binding enzyme C-terminal domain IAI05_12385 PF16177 Acetyl-coenzyme A synthetase N-terminus IAI05_12385 PF00501 AMP-binding enzyme IAI05_12395 PF01168 Alanine racemase, N-terminal domain IAI05_12400 PF00133 tRNA synthetases class I (I, L, M and V) IAI05_12400 PF08264 Anticodon-binding domain of tRNA IAI05_12400 PF13603 Leucyl-tRNA synthetase, Domain 2 IAI05_12415 PF11953 Domain of unknown function (DUF3470) IAI05_12415 PF00037 4Fe-4S binding domain IAI05_12420 PF00579 tRNA synthetases class I (W and Y) IAI05_12420 PF01479 S4 domain IAI05_12435 PF01494 FAD binding domain IAI05_12445 PF00543 Nitrogen regulatory protein P-II IAI05_12450 PF00909 Ammonium Transporter Family IAI05_12455 PF09397 Ftsk gamma domain IAI05_12455 PF01580 FtsK/SpoIIIE family IAI05_12455 PF17854 FtsK alpha domain IAI05_12455 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IAI05_12460 PF03548 Outer membrane lipoprotein carrier protein LolA IAI05_12475 PF00072 Response regulator receiver domain IAI05_12475 PF00486 Transcriptional regulatory protein, C terminal IAI05_12485 PF02559 CarD-like/TRCF domain IAI05_12490 PF05088 Bacterial NAD-glutamate dehydrogenase IAI05_12495 PF11700 Vacuole effluxer Atg22 like IAI05_12500 PF05233 PHB accumulation regulatory domain IAI05_12500 PF07879 PHB/PHA accumulation regulator DNA-binding domain IAI05_12505 PF02803 Thiolase, C-terminal domain IAI05_12505 PF00108 Thiolase, N-terminal domain IAI05_12520 PF00210 Ferritin-like domain IAI05_12525 PF00293 NUDIX domain IAI05_12530 PF04748 Divergent polysaccharide deacetylase IAI05_12535 PF13180 PDZ domain IAI05_12535 PF03572 Peptidase family S41 IAI05_12545 PF02590 Predicted SPOUT methyltransferase IAI05_12555 PF01467 Cytidylyltransferase-like IAI05_12560 PF00171 Aldehyde dehydrogenase family IAI05_12565 PF00696 Amino acid kinase family IAI05_12565 PF01472 PUA domain IAI05_12570 PF01926 50S ribosome-binding GTPase IAI05_12570 PF01018 GTP1/OBG IAI05_12575 PF13302 Acetyltransferase (GNAT) domain IAI05_12585 PF01016 Ribosomal L27 protein IAI05_12590 PF00829 Ribosomal prokaryotic L21 protein IAI05_12605 PF03328 HpcH/HpaI aldolase/citrate lyase family IAI05_12615 PF00694 Aconitase C-terminal domain IAI05_12620 PF00180 Isocitrate/isopropylmalate dehydrogenase IAI05_12625 PF03150 Di-haem cytochrome c peroxidase IAI05_12630 PF07685 CobB/CobQ-like glutamine amidotransferase domain IAI05_12630 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IAI05_12635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IAI05_12640 PF01888 CbiD IAI05_12645 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IAI05_12655 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IAI05_12660 PF02571 Precorrin-6x reductase CbiJ/CobK IAI05_12665 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IAI05_12670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IAI05_12675 PF02570 Precorrin-8X methylmutase IAI05_12680 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IAI05_12685 PF02514 CobN/Magnesium Chelatase IAI05_12690 PF02492 CobW/HypB/UreG, nucleotide-binding domain IAI05_12690 PF07683 Cobalamin synthesis protein cobW C-terminal domain IAI05_12700 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IAI05_12705 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IAI05_12705 PF07685 CobB/CobQ-like glutamine amidotransferase domain IAI05_12710 PF03186 CobD/Cbib protein IAI05_12715 PF00155 Aminotransferase class I and II IAI05_12720 PF13378 Enolase C-terminal domain-like IAI05_12720 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IAI05_12725 PF05336 L-rhamnose mutarotase IAI05_12730 PF01232 Mannitol dehydrogenase Rossmann domain IAI05_12730 PF08125 Mannitol dehydrogenase C-terminal domain IAI05_12735 PF00107 Zinc-binding dehydrogenase IAI05_12735 PF08240 Alcohol dehydrogenase GroES-like domain IAI05_12745 PF00248 Aldo/keto reductase family IAI05_12755 PF02653 Branched-chain amino acid transport system / permease component IAI05_12760 PF00005 ABC transporter IAI05_12765 PF07729 FCD domain IAI05_12765 PF00392 Bacterial regulatory proteins, gntR family IAI05_12770 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus IAI05_12770 PF08666 SAF domain IAI05_12775 PF02142 MGS-like domain IAI05_12775 PF01808 AICARFT/IMPCHase bienzyme IAI05_12785 PF01189 16S rRNA methyltransferase RsmB/F IAI05_12785 PF01029 NusB family IAI05_12790 PF01435 Peptidase family M48 IAI05_12800 PF02195 ParB-like nuclease domain IAI05_12800 PF17762 HTH domain found in ParB protein IAI05_12805 PF13614 AAA domain IAI05_12810 PF02527 rRNA small subunit methyltransferase G IAI05_12815 PF13932 GidA associated domain IAI05_12815 PF01134 Glucose inhibited division protein A IAI05_12820 PF01926 50S ribosome-binding GTPase IAI05_12820 PF12631 MnmE helical domain IAI05_12820 PF10396 GTP-binding protein TrmE N-terminus IAI05_12825 PF07498 Rho termination factor, N-terminal domain IAI05_12825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IAI05_12825 PF07497 Rho termination factor, RNA-binding domain IAI05_12830 PF03653 Uncharacterised protein family (UPF0093) IAI05_12835 PF01208 Uroporphyrinogen decarboxylase (URO-D) IAI05_12840 PF03618 Kinase/pyrophosphorylase IAI05_12845 PF02545 Maf-like protein IAI05_12850 PF01488 Shikimate / quinate 5-dehydrogenase IAI05_12850 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IAI05_12850 PF08501 Shikimate dehydrogenase substrate binding domain IAI05_12855 PF01121 Dephospho-CoA kinase IAI05_12860 PF00929 Exonuclease IAI05_12865 PF02556 Preprotein translocase subunit SecB IAI05_12870 PF04186 FxsA cytoplasmic membrane protein IAI05_12880 PF06725 3D domain IAI05_12880 PF03562 MltA specific insert domain IAI05_12895 PF00986 DNA gyrase B subunit, carboxyl terminus IAI05_12895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_12895 PF01751 Toprim domain IAI05_12895 PF00204 DNA gyrase B IAI05_12905 PF01557 Fumarylacetoacetate (FAA) hydrolase family IAI05_12920 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IAI05_12925 PF00291 Pyridoxal-phosphate dependent enzyme IAI05_12930 PF00290 Tryptophan synthase alpha chain IAI05_12935 PF01039 Carboxyl transferase domain IAI05_12940 PF08245 Mur ligase middle domain IAI05_12940 PF02875 Mur ligase family, glutamate ligase domain IAI05_12945 PF00085 Thioredoxin IAI05_12950 PF00580 UvrD/REP helicase N-terminal domain IAI05_12950 PF13361 UvrD-like helicase C-terminal domain IAI05_12950 PF12705 PD-(D/E)XK nuclease superfamily IAI05_12960 PF12804 MobA-like NTP transferase domain IAI05_12965 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IAI05_12970 PF00512 His Kinase A (phospho-acceptor) domain IAI05_12970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_12975 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IAI05_12975 PF05221 S-adenosyl-L-homocysteine hydrolase IAI05_12980 PF00381 PTS HPr component phosphorylation site IAI05_12985 PF03610 PTS system fructose IIA component IAI05_12985 PF03830 PTS system sorbose subfamily IIB component IAI05_12990 PF07475 HPr Serine kinase C-terminal domain IAI05_12990 PF02603 HPr Serine kinase N terminus IAI05_12995 PF13756 Stimulus-sensing domain IAI05_12995 PF13755 Sensor N-terminal transmembrane domain IAI05_12995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_12995 PF00512 His Kinase A (phospho-acceptor) domain IAI05_12995 PF00672 HAMP domain IAI05_13000 PF00072 Response regulator receiver domain IAI05_13000 PF00486 Transcriptional regulatory protein, C terminal IAI05_13005 PF01293 Phosphoenolpyruvate carboxykinase IAI05_13010 PF00472 RF-1 domain IAI05_13015 PF01476 LysM domain IAI05_13015 PF04972 BON domain IAI05_13020 PF00485 Phosphoribulokinase / Uridine kinase family IAI05_13025 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase IAI05_13030 PF00977 Histidine biosynthesis protein IAI05_13035 PF00977 Histidine biosynthesis protein IAI05_13040 PF00117 Glutamine amidotransferase class-I IAI05_13050 PF00475 Imidazoleglycerol-phosphate dehydratase IAI05_13055 PF00227 Proteasome subunit IAI05_13060 PF00004 ATPase family associated with various cellular activities (AAA) IAI05_13060 PF10431 C-terminal, D2-small domain, of ClpB protein IAI05_13060 PF07724 AAA domain (Cdc48 subfamily) IAI05_13070 PF01274 Malate synthase IAI05_13085 PF00072 Response regulator receiver domain IAI05_13090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_13090 PF00512 His Kinase A (phospho-acceptor) domain IAI05_13095 PF00270 DEAD/DEAH box helicase IAI05_13095 PF04408 Helicase associated domain (HA2) IAI05_13095 PF08482 ATP-dependent helicase C-terminal IAI05_13095 PF00271 Helicase conserved C-terminal domain IAI05_13130 PF00570 HRDC domain IAI05_13130 PF00271 Helicase conserved C-terminal domain IAI05_13130 PF00270 DEAD/DEAH box helicase IAI05_13130 PF16124 RecQ zinc-binding IAI05_13130 PF09382 RQC domain IAI05_13135 PF00480 ROK family IAI05_13140 PF13407 Periplasmic binding protein domain IAI05_13145 PF02653 Branched-chain amino acid transport system / permease component IAI05_13150 PF00005 ABC transporter IAI05_13155 PF00485 Phosphoribulokinase / Uridine kinase family IAI05_13160 PF00462 Glutaredoxin IAI05_13165 PF07972 NrdI Flavodoxin like IAI05_13170 PF08343 Ribonucleotide reductase N-terminal IAI05_13170 PF00317 Ribonucleotide reductase, all-alpha domain IAI05_13170 PF02867 Ribonucleotide reductase, barrel domain IAI05_13175 PF00268 Ribonucleotide reductase, small chain IAI05_13185 PF02463 RecF/RecN/SMC N terminal domain IAI05_13190 PF00899 ThiF family IAI05_13190 PF00581 Rhodanese-like domain IAI05_13205 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IAI05_13205 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IAI05_13215 PF00294 pfkB family carbohydrate kinase IAI05_13225 PF08468 Methyltransferase small domain N-terminal IAI05_13225 PF05175 Methyltransferase small domain IAI05_13230 PF00013 KH domain IAI05_13230 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IAI05_13230 PF01138 3' exoribonuclease family, domain 1 IAI05_13230 PF00575 S1 RNA binding domain IAI05_13230 PF03725 3' exoribonuclease family, domain 2 IAI05_13235 PF00312 Ribosomal protein S15 IAI05_13240 PF16198 tRNA pseudouridylate synthase B C-terminal domain IAI05_13240 PF09157 Pseudouridine synthase II TruB, C-terminal IAI05_13240 PF01509 TruB family pseudouridylate synthase (N terminal domain) IAI05_13245 PF02033 Ribosome-binding factor A IAI05_13250 PF00009 Elongation factor Tu GTP binding domain IAI05_13250 PF08364 Bacterial translation initiation factor IF-2 associated region IAI05_13250 PF03144 Elongation factor Tu domain 2 IAI05_13250 PF11987 Translation-initiation factor 2 IAI05_13250 PF04760 Translation initiation factor IF-2, N-terminal region IAI05_13260 PF08529 NusA N-terminal domain IAI05_13260 PF00575 S1 RNA binding domain IAI05_13260 PF13184 NusA-like KH domain IAI05_13265 PF17384 RimP C-terminal SH3 domain IAI05_13265 PF02576 RimP N-terminal domain IAI05_13270 PF05977 Transmembrane secretion effector IAI05_13275 PF13406 Transglycosylase SLT domain IAI05_13280 PF13662 Toprim domain IAI05_13280 PF02132 RecR protein IAI05_13290 PF02575 YbaB/EbfC DNA-binding family IAI05_13295 PF12169 DNA polymerase III subunits gamma and tau domain III IAI05_13295 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding IAI05_13295 PF12170 DNA polymerase III tau subunit V interacting with alpha IAI05_13310 PF00293 NUDIX domain IAI05_13310 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain IAI05_13310 PF09297 NADH pyrophosphatase zinc ribbon domain IAI05_13315 PF01817 Chorismate mutase type II IAI05_13315 PF00800 Prephenate dehydratase IAI05_13320 PF02348 Cytidylyltransferase IAI05_13325 PF00034 Cytochrome c IAI05_13330 PF02397 Bacterial sugar transferase IAI05_13335 PF00912 Transglycosylase IAI05_13335 PF00905 Penicillin binding protein transpeptidase domain IAI05_13340 PF04073 Aminoacyl-tRNA editing domain IAI05_13345 PF00313 'Cold-shock' DNA-binding domain IAI05_13350 PF01546 Peptidase family M20/M25/M40 IAI05_13350 PF07687 Peptidase dimerisation domain IAI05_13355 PF01047 MarR family IAI05_13360 PF00476 DNA polymerase family A IAI05_13360 PF01612 3'-5' exonuclease IAI05_13360 PF01367 5'-3' exonuclease, C-terminal SAM fold IAI05_13360 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IAI05_13365 PF01783 Ribosomal L32p protein family IAI05_13370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_13370 PF02743 Cache domain IAI05_13370 PF00512 His Kinase A (phospho-acceptor) domain IAI05_13375 PF00072 Response regulator receiver domain IAI05_13375 PF00158 Sigma-54 interaction domain IAI05_13375 PF02954 Bacterial regulatory protein, Fis family IAI05_13380 PF03401 Tripartite tricarboxylate transporter family receptor IAI05_13385 PF07331 Tripartite tricarboxylate transporter TctB family IAI05_13390 PF01970 Tripartite tricarboxylate transporter TctA family IAI05_13395 PF04102 SlyX IAI05_13405 PF00684 DnaJ central domain IAI05_13405 PF01556 DnaJ C terminal domain IAI05_13405 PF00226 DnaJ domain IAI05_13410 PF00012 Hsp70 protein IAI05_13425 PF01625 Peptide methionine sulfoxide reductase IAI05_13430 PF02608 ABC transporter substrate-binding protein PnrA-like IAI05_13435 PF00005 ABC transporter IAI05_13440 PF02653 Branched-chain amino acid transport system / permease component IAI05_13445 PF02653 Branched-chain amino acid transport system / permease component IAI05_13450 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IAI05_13455 PF01048 Phosphorylase superfamily IAI05_13460 PF01791 DeoC/LacD family aldolase IAI05_13465 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain IAI05_13465 PF02885 Glycosyl transferase family, helical bundle domain IAI05_13465 PF00591 Glycosyl transferase family, a/b domain IAI05_13480 PF00962 Adenosine/AMP deaminase IAI05_13485 PF01676 Metalloenzyme superfamily IAI05_13495 PF03626 Prokaryotic Cytochrome C oxidase subunit IV IAI05_13500 PF00510 Cytochrome c oxidase subunit III IAI05_13505 PF00115 Cytochrome C and Quinol oxidase polypeptide I IAI05_13510 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IAI05_13510 PF06481 COX Aromatic Rich Motif IAI05_13515 PF07690 Major Facilitator Superfamily IAI05_13515 PF00083 Sugar (and other) transporter IAI05_13520 PF04898 Glutamate synthase central domain IAI05_13520 PF00310 Glutamine amidotransferases class-II IAI05_13520 PF01645 Conserved region in glutamate synthase IAI05_13520 PF01493 GXGXG motif IAI05_13525 PF00667 FAD binding domain IAI05_13525 PF00175 Oxidoreductase NAD-binding domain IAI05_13525 PF00258 Flavodoxin IAI05_13545 PF02801 Beta-ketoacyl synthase, C-terminal domain IAI05_13545 PF00109 Beta-ketoacyl synthase, N-terminal domain IAI05_13550 PF07977 FabA-like domain IAI05_13560 PF03458 UPF0126 domain IAI05_13570 PF06912 Protein of unknown function (DUF1275) IAI05_13580 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_13585 PF00005 ABC transporter IAI05_13590 PF07702 UTRA domain IAI05_13590 PF00392 Bacterial regulatory proteins, gntR family IAI05_13595 PF01618 MotA/TolQ/ExbB proton channel family IAI05_13600 PF02472 Biopolymer transport protein ExbD/TolR IAI05_13610 PF02615 Malate/L-lactate dehydrogenase IAI05_13625 PF00625 Guanylate kinase IAI05_13630 PF07969 Amidohydrolase family IAI05_13635 PF06299 Protein of unknown function (DUF1045) IAI05_13640 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_13645 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_13655 PF00005 ABC transporter IAI05_13665 PF00005 ABC transporter IAI05_13670 PF00005 ABC transporter IAI05_13675 PF06007 Phosphonate metabolism protein PhnJ IAI05_13680 PF05861 Bacterial phosphonate metabolism protein (PhnI) IAI05_13685 PF05845 Bacterial phosphonate metabolism protein (PhnH) IAI05_13690 PF06754 Phosphonate metabolism protein PhnG IAI05_13695 PF07702 UTRA domain IAI05_13695 PF00392 Bacterial regulatory proteins, gntR family IAI05_13700 PF05173 Dihydrodipicolinate reductase, C-terminus IAI05_13700 PF01113 Dihydrodipicolinate reductase, N-terminus IAI05_13705 PF02685 Glucokinase IAI05_13710 PF02142 MGS-like domain IAI05_13715 PF03411 Penicillin-insensitive murein endopeptidase IAI05_13720 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_13725 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_13730 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_13730 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_13735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_13735 PF00005 ABC transporter IAI05_13740 PF01266 FAD dependent oxidoreductase IAI05_13745 PF00120 Glutamine synthetase, catalytic domain IAI05_13750 PF01266 FAD dependent oxidoreductase IAI05_13760 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_13765 PF00005 ABC transporter IAI05_13770 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_13775 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IAI05_13785 PF02082 Transcriptional regulator IAI05_13790 PF13416 Bacterial extracellular solute-binding protein IAI05_13800 PF05987 Bacterial protein of unknown function (DUF898) IAI05_13805 PF00171 Aldehyde dehydrogenase family IAI05_13810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_13810 PF03466 LysR substrate binding domain IAI05_13815 PF00892 EamA-like transporter family IAI05_13830 PF00877 NlpC/P60 family IAI05_13840 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain IAI05_13840 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IAI05_13845 PF00883 Cytosol aminopeptidase family, catalytic domain IAI05_13845 PF02789 Cytosol aminopeptidase family, N-terminal domain IAI05_13865 PF00437 Type II/IV secretion system protein IAI05_13880 PF13629 Pilus formation protein N terminal region IAI05_13880 PF04972 BON domain IAI05_13880 PF00263 Bacterial type II and III secretion system protein IAI05_13920 PF00117 Glutamine amidotransferase class-I IAI05_13925 PF07411 Domain of unknown function (DUF1508) IAI05_13930 PF01183 Glycosyl hydrolases family 25 IAI05_13935 PF00892 EamA-like transporter family IAI05_13940 PF00155 Aminotransferase class I and II IAI05_13940 PF00392 Bacterial regulatory proteins, gntR family IAI05_13955 PF07992 Pyridine nucleotide-disulphide oxidoreductase IAI05_13970 PF06421 GTP-binding protein LepA C-terminus IAI05_13970 PF00679 Elongation factor G C-terminus IAI05_13970 PF00009 Elongation factor Tu GTP binding domain IAI05_13970 PF03144 Elongation factor Tu domain 2 IAI05_13975 PF00795 Carbon-nitrogen hydrolase IAI05_14005 PF02311 AraC-like ligand binding domain IAI05_14005 PF12833 Helix-turn-helix domain IAI05_14010 PF03480 Bacterial extracellular solute-binding protein, family 7 IAI05_14035 PF05198 Translation initiation factor IF-3, N-terminal domain IAI05_14035 PF00707 Translation initiation factor IF-3, C-terminal domain IAI05_14040 PF01632 Ribosomal protein L35 IAI05_14045 PF00453 Ribosomal protein L20 IAI05_14055 PF01409 tRNA synthetases class II core domain (F) IAI05_14055 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IAI05_14060 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IAI05_14060 PF03147 Ferredoxin-fold anticodon binding domain IAI05_14060 PF01588 Putative tRNA binding domain IAI05_14060 PF03483 B3/4 domain IAI05_14060 PF03484 tRNA synthetase B5 domain IAI05_14065 PF00248 Aldo/keto reductase family IAI05_14070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_14070 PF03466 LysR substrate binding domain IAI05_14080 PF00248 Aldo/keto reductase family IAI05_14085 PF01965 DJ-1/PfpI family IAI05_14085 PF12833 Helix-turn-helix domain IAI05_14095 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IAI05_14095 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_14110 PF02601 Exonuclease VII, large subunit IAI05_14110 PF13742 OB-fold nucleic acid binding domain IAI05_14115 PF13378 Enolase C-terminal domain-like IAI05_14115 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IAI05_14120 PF00392 Bacterial regulatory proteins, gntR family IAI05_14120 PF07729 FCD domain IAI05_14125 PF01047 MarR family IAI05_14130 PF00892 EamA-like transporter family IAI05_14135 PF02073 Thermophilic metalloprotease (M29) IAI05_14140 PF04073 Aminoacyl-tRNA editing domain IAI05_14145 PF03960 ArsC family IAI05_14165 PF00440 Bacterial regulatory proteins, tetR family IAI05_14175 PF00117 Glutamine amidotransferase class-I IAI05_14175 PF00958 GMP synthase C terminal domain IAI05_14190 PF03073 TspO/MBR family IAI05_14215 PF01189 16S rRNA methyltransferase RsmB/F IAI05_14215 PF01029 NusB family IAI05_14220 PF03330 Lytic transglycolase IAI05_14230 PF08331 Domain of unknown function (DUF1730) IAI05_14235 PF13417 Glutathione S-transferase, N-terminal domain IAI05_14235 PF00043 Glutathione S-transferase, C-terminal domain IAI05_14240 PF02673 Bacitracin resistance protein BacA IAI05_14255 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family IAI05_14265 PF00398 Ribosomal RNA adenine dimethylase IAI05_14270 PF02768 DNA polymerase III beta subunit, C-terminal domain IAI05_14270 PF00712 DNA polymerase III beta subunit, N-terminal domain IAI05_14270 PF02767 DNA polymerase III beta subunit, central domain IAI05_14275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IAI05_14280 PF02021 Uncharacterised protein family UPF0102 IAI05_14285 PF12464 Maltose acetyltransferase IAI05_14285 PF14602 Hexapeptide repeat of succinyl-transferase IAI05_14290 PF13416 Bacterial extracellular solute-binding protein IAI05_14295 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_14300 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_14305 PF00005 ABC transporter IAI05_14315 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IAI05_14315 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IAI05_14325 PF00291 Pyridoxal-phosphate dependent enzyme IAI05_14330 PF01810 LysE type translocator IAI05_14335 PF00692 dUTPase IAI05_14340 PF16658 Class II release factor RF3, C-terminal domain IAI05_14340 PF03144 Elongation factor Tu domain 2 IAI05_14340 PF00009 Elongation factor Tu GTP binding domain IAI05_14345 PF04127 DNA / pantothenate metabolism flavoprotein IAI05_14345 PF02441 Flavoprotein IAI05_14360 PF03109 ABC1 family IAI05_14365 PF01209 ubiE/COQ5 methyltransferase family IAI05_14370 PF06827 Zinc finger found in FPG and IleRS IAI05_14370 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IAI05_14370 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IAI05_14375 PF00378 Enoyl-CoA hydratase/isomerase IAI05_14380 PF01649 Ribosomal protein S20 IAI05_14395 PF07690 Major Facilitator Superfamily IAI05_14425 PF00313 'Cold-shock' DNA-binding domain IAI05_14455 PF13458 Periplasmic binding protein IAI05_14460 PF02653 Branched-chain amino acid transport system / permease component IAI05_14465 PF02653 Branched-chain amino acid transport system / permease component IAI05_14470 PF12399 Branched-chain amino acid ATP-binding cassette transporter IAI05_14470 PF00005 ABC transporter IAI05_14475 PF00005 ABC transporter IAI05_14475 PF09383 NIL domain IAI05_14480 PF00795 Carbon-nitrogen hydrolase IAI05_14485 PF00465 Iron-containing alcohol dehydrogenase IAI05_14490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_14495 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_14500 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_14500 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_14505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_14505 PF00005 ABC transporter IAI05_14510 PF08220 DeoR-like helix-turn-helix domain IAI05_14510 PF00455 DeoR C terminal sensor domain IAI05_14515 PF01546 Peptidase family M20/M25/M40 IAI05_14530 PF00459 Inositol monophosphatase family IAI05_14535 PF06751 Ethanolamine ammonia lyase large subunit (EutB) IAI05_14540 PF05985 Ethanolamine ammonia-lyase light chain (EutC) IAI05_14545 PF00999 Sodium/hydrogen exchanger family IAI05_14550 PF13649 Methyltransferase domain IAI05_14565 PF01266 FAD dependent oxidoreductase IAI05_14570 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_14570 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_14575 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_14580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_14585 PF01266 FAD dependent oxidoreductase IAI05_14590 PF00300 Histidine phosphatase superfamily (branch 1) IAI05_14590 PF00106 short chain dehydrogenase IAI05_14600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_14600 PF00005 ABC transporter IAI05_14610 PF00990 Diguanylate cyclase, GGDEF domain IAI05_14615 PF07690 Major Facilitator Superfamily IAI05_14625 PF00578 AhpC/TSA family IAI05_14625 PF17991 Thioredoxin like C-terminal domain IAI05_14625 PF02683 Cytochrome C biogenesis protein transmembrane region IAI05_14635 PF00561 alpha/beta hydrolase fold IAI05_14640 PF00072 Response regulator receiver domain IAI05_14640 PF00486 Transcriptional regulatory protein, C terminal IAI05_14645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_14645 PF00672 HAMP domain IAI05_14645 PF00512 His Kinase A (phospho-acceptor) domain IAI05_14650 PF02566 OsmC-like protein IAI05_14655 PF00171 Aldehyde dehydrogenase family IAI05_14660 PF06441 Epoxide hydrolase N terminus IAI05_14675 PF00561 alpha/beta hydrolase fold IAI05_14680 PF00210 Ferritin-like domain IAI05_14685 PF00384 Molybdopterin oxidoreductase IAI05_14690 PF00072 Response regulator receiver domain IAI05_14690 PF00512 His Kinase A (phospho-acceptor) domain IAI05_14690 PF08448 PAS fold IAI05_14690 PF13426 PAS domain IAI05_14690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_14695 PF00072 Response regulator receiver domain IAI05_14695 PF00196 Bacterial regulatory proteins, luxR family IAI05_14700 PF00072 Response regulator receiver domain IAI05_14700 PF00196 Bacterial regulatory proteins, luxR family IAI05_14710 PF00190 Cupin IAI05_14715 PF01494 FAD binding domain IAI05_14720 PF04199 Putative cyclase IAI05_14725 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IAI05_14725 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IAI05_14730 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IAI05_14730 PF03480 Bacterial extracellular solute-binding protein, family 7 IAI05_14740 PF09339 IclR helix-turn-helix domain IAI05_14740 PF01614 Bacterial transcriptional regulator IAI05_14750 PF13193 AMP-binding enzyme C-terminal domain IAI05_14750 PF00501 AMP-binding enzyme IAI05_14775 PF01037 Lrp/AsnC ligand binding domain IAI05_14800 PF01594 AI-2E family transporter IAI05_14815 PF13520 Amino acid permease IAI05_14820 PF13520 Amino acid permease IAI05_14825 PF00873 AcrB/AcrD/AcrF family IAI05_14830 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IAI05_14840 PF02308 MgtC family IAI05_14845 PF01494 FAD binding domain IAI05_14855 PF13460 NAD(P)H-binding IAI05_14860 PF00873 AcrB/AcrD/AcrF family IAI05_14865 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IAI05_14865 PF00529 HlyD membrane-fusion protein of T1SS IAI05_14870 PF00486 Transcriptional regulatory protein, C terminal IAI05_14870 PF00072 Response regulator receiver domain IAI05_14875 PF16736 Single Cache-like IAI05_14875 PF00512 His Kinase A (phospho-acceptor) domain IAI05_14875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_14875 PF00989 PAS fold IAI05_14880 PF07690 Major Facilitator Superfamily IAI05_14890 PF00860 Permease family IAI05_14900 PF00144 Beta-lactamase IAI05_14905 PF03466 LysR substrate binding domain IAI05_14905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_14945 PF01177 Asp/Glu/Hydantoin racemase IAI05_14950 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_14955 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_14965 PF00005 ABC transporter IAI05_14965 PF08402 TOBE domain IAI05_14990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_14990 PF08447 PAS fold IAI05_14990 PF13426 PAS domain IAI05_15000 PF13416 Bacterial extracellular solute-binding protein IAI05_15005 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15010 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15015 PF00005 ABC transporter IAI05_15015 PF17912 MalK OB fold domain IAI05_15025 PF00296 Luciferase-like monooxygenase IAI05_15030 PF09084 NMT1/THI5 like IAI05_15035 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15040 PF00005 ABC transporter IAI05_15045 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15050 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15060 PF17912 MalK OB fold domain IAI05_15060 PF00005 ABC transporter IAI05_15065 PF06964 Alpha-L-arabinofuranosidase C-terminal domain IAI05_15080 PF00356 Bacterial regulatory proteins, lacI family IAI05_15090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IAI05_15090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IAI05_15090 PF01842 ACT domain IAI05_15095 PF01261 Xylose isomerase-like TIM barrel IAI05_15100 PF03459 TOBE domain IAI05_15100 PF00005 ABC transporter IAI05_15100 PF17912 MalK OB fold domain IAI05_15105 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15110 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15115 PF13416 Bacterial extracellular solute-binding protein IAI05_15120 PF00440 Bacterial regulatory proteins, tetR family IAI05_15120 PF17938 Tetracyclin repressor-like, C-terminal domain IAI05_15125 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IAI05_15125 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_15140 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IAI05_15140 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_15150 PF00313 'Cold-shock' DNA-binding domain IAI05_15160 PF01165 Ribosomal protein S21 IAI05_15185 PF00550 Phosphopantetheine attachment site IAI05_15190 PF07470 Glycosyl Hydrolase Family 88 IAI05_15195 PF00295 Glycosyl hydrolases family 28 IAI05_15205 PF08402 TOBE domain IAI05_15205 PF00005 ABC transporter IAI05_15210 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15215 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15220 PF02311 AraC-like ligand binding domain IAI05_15220 PF12833 Helix-turn-helix domain IAI05_15225 PF04909 Amidohydrolase IAI05_15230 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IAI05_15230 PF13378 Enolase C-terminal domain-like IAI05_15235 PF00701 Dihydrodipicolinate synthetase family IAI05_15245 PF04962 KduI/IolB family IAI05_15250 PF01370 NAD dependent epimerase/dehydratase family IAI05_15255 PF00392 Bacterial regulatory proteins, gntR family IAI05_15255 PF07729 FCD domain IAI05_15270 PF00248 Aldo/keto reductase family IAI05_15275 PF00005 ABC transporter IAI05_15275 PF17912 MalK OB fold domain IAI05_15280 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15285 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15300 PF02311 AraC-like ligand binding domain IAI05_15300 PF12833 Helix-turn-helix domain IAI05_15305 PF07690 Major Facilitator Superfamily IAI05_15310 PF00356 Bacterial regulatory proteins, lacI family IAI05_15315 PF08240 Alcohol dehydrogenase GroES-like domain IAI05_15315 PF16912 Glucose dehydrogenase C-terminus IAI05_15330 PF00294 pfkB family carbohydrate kinase IAI05_15335 PF08013 Tagatose 6 phosphate kinase IAI05_15340 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15345 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15350 PF08402 TOBE domain IAI05_15350 PF00005 ABC transporter IAI05_15355 PF00005 ABC transporter IAI05_15355 PF17912 MalK OB fold domain IAI05_15360 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15365 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15370 PF01547 Bacterial extracellular solute-binding protein IAI05_15375 PF01053 Cys/Met metabolism PLP-dependent enzyme IAI05_15390 PF00583 Acetyltransferase (GNAT) family IAI05_15395 PF01297 Zinc-uptake complex component A periplasmic IAI05_15400 PF00950 ABC 3 transport family IAI05_15405 PF00005 ABC transporter IAI05_15410 PF02492 CobW/HypB/UreG, nucleotide-binding domain IAI05_15410 PF07683 Cobalamin synthesis protein cobW C-terminal domain IAI05_15425 PF02492 CobW/HypB/UreG, nucleotide-binding domain IAI05_15425 PF07683 Cobalamin synthesis protein cobW C-terminal domain IAI05_15430 PF13416 Bacterial extracellular solute-binding protein IAI05_15435 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15440 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15445 PF00005 ABC transporter IAI05_15445 PF08402 TOBE domain IAI05_15455 PF03922 OmpW family IAI05_15475 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IAI05_15475 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IAI05_15480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_15480 PF03466 LysR substrate binding domain IAI05_15485 PF13407 Periplasmic binding protein domain IAI05_15490 PF02653 Branched-chain amino acid transport system / permease component IAI05_15495 PF00005 ABC transporter IAI05_15500 PF08361 MAATS-type transcriptional repressor, C-terminal region IAI05_15500 PF00440 Bacterial regulatory proteins, tetR family IAI05_15505 PF00873 AcrB/AcrD/AcrF family IAI05_15510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IAI05_15510 PF00529 HlyD membrane-fusion protein of T1SS IAI05_15515 PF17151 Periplasmic sensor domain IAI05_15515 PF00990 Diguanylate cyclase, GGDEF domain IAI05_15520 PF05899 Protein of unknown function (DUF861) IAI05_15520 PF07883 Cupin domain IAI05_15530 PF08448 PAS fold IAI05_15530 PF00990 Diguanylate cyclase, GGDEF domain IAI05_15530 PF00563 EAL domain IAI05_15530 PF08447 PAS fold IAI05_15535 PF02615 Malate/L-lactate dehydrogenase IAI05_15540 PF09397 Ftsk gamma domain IAI05_15540 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IAI05_15540 PF17854 FtsK alpha domain IAI05_15540 PF01580 FtsK/SpoIIIE family IAI05_15545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_15550 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15555 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_15560 PF00005 ABC transporter IAI05_15565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_15565 PF00005 ABC transporter IAI05_15570 PF00266 Aminotransferase class-V IAI05_15580 PF12833 Helix-turn-helix domain IAI05_15585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IAI05_15595 PF00920 Dehydratase family IAI05_15600 PF13407 Periplasmic binding protein domain IAI05_15605 PF00005 ABC transporter IAI05_15610 PF02653 Branched-chain amino acid transport system / permease component IAI05_15615 PF02653 Branched-chain amino acid transport system / permease component IAI05_15620 PF00392 Bacterial regulatory proteins, gntR family IAI05_15620 PF07729 FCD domain IAI05_15625 PF07690 Major Facilitator Superfamily IAI05_15635 PF13847 Methyltransferase domain IAI05_15640 PF01336 OB-fold nucleic acid binding domain IAI05_15640 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IAI05_15640 PF02811 PHP domain IAI05_15640 PF14579 Helix-hairpin-helix motif IAI05_15640 PF07733 Bacterial DNA polymerase III alpha NTPase domain IAI05_15660 PF05161 MOFRL family IAI05_15660 PF13660 Domain of unknown function (DUF4147) IAI05_15670 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IAI05_15670 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_15680 PF00005 ABC transporter IAI05_15680 PF03459 TOBE domain IAI05_15680 PF17912 MalK OB fold domain IAI05_15685 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15690 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15695 PF01547 Bacterial extracellular solute-binding protein IAI05_15705 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_15715 PF01425 Amidase IAI05_15720 PF00563 EAL domain IAI05_15720 PF00990 Diguanylate cyclase, GGDEF domain IAI05_15720 PF08447 PAS fold IAI05_15720 PF08448 PAS fold IAI05_15735 PF03776 Septum formation topological specificity factor MinE IAI05_15740 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IAI05_15745 PF03775 Septum formation inhibitor MinC, C-terminal domain IAI05_15745 PF05209 Septum formation inhibitor MinC, N-terminal domain IAI05_15750 PF13419 Haloacid dehalogenase-like hydrolase IAI05_15755 PF00392 Bacterial regulatory proteins, gntR family IAI05_15755 PF07729 FCD domain IAI05_15760 PF03480 Bacterial extracellular solute-binding protein, family 7 IAI05_15770 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IAI05_15775 PF00107 Zinc-binding dehydrogenase IAI05_15775 PF08240 Alcohol dehydrogenase GroES-like domain IAI05_15780 PF03786 D-mannonate dehydratase (UxuA) IAI05_15790 PF00171 Aldehyde dehydrogenase family IAI05_15800 PF03480 Bacterial extracellular solute-binding protein, family 7 IAI05_15805 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IAI05_15805 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IAI05_15810 PF00296 Luciferase-like monooxygenase IAI05_15825 PF02798 Glutathione S-transferase, N-terminal domain IAI05_15825 PF00043 Glutathione S-transferase, C-terminal domain IAI05_15830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_15830 PF00005 ABC transporter IAI05_15835 PF03841 L-seryl-tRNA selenium transferase IAI05_15850 PF01979 Amidohydrolase family IAI05_15855 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15855 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_15860 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_15870 PF13439 Glycosyltransferase Family 4 IAI05_15870 PF00534 Glycosyl transferases group 1 IAI05_15875 PF02563 Polysaccharide biosynthesis/export protein IAI05_15885 PF00873 AcrB/AcrD/AcrF family IAI05_15900 PF01613 Flavin reductase like domain IAI05_15905 PF00248 Aldo/keto reductase family IAI05_15910 PF00296 Luciferase-like monooxygenase IAI05_15915 PF07702 UTRA domain IAI05_15915 PF00392 Bacterial regulatory proteins, gntR family IAI05_15920 PF08402 TOBE domain IAI05_15920 PF00005 ABC transporter IAI05_15925 PF01547 Bacterial extracellular solute-binding protein IAI05_15930 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15935 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15940 PF01055 Glycosyl hydrolases family 31 IAI05_15950 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_15955 PF09084 NMT1/THI5 like IAI05_15960 PF02110 Hydroxyethylthiazole kinase family IAI05_15965 PF02581 Thiamine monophosphate synthase IAI05_15970 PF08543 Phosphomethylpyrimidine kinase IAI05_15975 PF01037 Lrp/AsnC ligand binding domain IAI05_15980 PF01168 Alanine racemase, N-terminal domain IAI05_15980 PF00842 Alanine racemase, C-terminal domain IAI05_15985 PF01266 FAD dependent oxidoreductase IAI05_16000 PF00158 Sigma-54 interaction domain IAI05_16000 PF02954 Bacterial regulatory protein, Fis family IAI05_16000 PF00072 Response regulator receiver domain IAI05_16005 PF00512 His Kinase A (phospho-acceptor) domain IAI05_16005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_16005 PF02743 Cache domain IAI05_16010 PF00375 Sodium:dicarboxylate symporter family IAI05_16015 PF00202 Aminotransferase class-III IAI05_16030 PF01546 Peptidase family M20/M25/M40 IAI05_16030 PF07687 Peptidase dimerisation domain IAI05_16040 PF01270 Glycosyl hydrolases family 8 IAI05_16050 PF03552 Cellulose synthase IAI05_16050 PF07238 PilZ domain IAI05_16050 PF00535 Glycosyl transferase family 2 IAI05_16080 PF16363 GDP-mannose 4,6 dehydratase IAI05_16085 PF01370 NAD dependent epimerase/dehydratase family IAI05_16095 PF00072 Response regulator receiver domain IAI05_16095 PF00196 Bacterial regulatory proteins, luxR family IAI05_16110 PF00005 ABC transporter IAI05_16110 PF00664 ABC transporter transmembrane region IAI05_16115 PF00529 HlyD membrane-fusion protein of T1SS IAI05_16130 PF02563 Polysaccharide biosynthesis/export protein IAI05_16135 PF02397 Bacterial sugar transferase IAI05_16145 PF00202 Aminotransferase class-III IAI05_16150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_16150 PF02203 Tar ligand binding domain homologue IAI05_16150 PF00672 HAMP domain IAI05_16155 PF03734 L,D-transpeptidase catalytic domain IAI05_16155 PF17969 L,D-transpeptidase C-terminal domain IAI05_16175 PF02245 Methylpurine-DNA glycosylase (MPG) IAI05_16190 PF00356 Bacterial regulatory proteins, lacI family IAI05_16195 PF01547 Bacterial extracellular solute-binding protein IAI05_16200 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16205 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16210 PF17912 MalK OB fold domain IAI05_16210 PF03459 TOBE domain IAI05_16210 PF00005 ABC transporter IAI05_16220 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IAI05_16220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_16225 PF04055 Radical SAM superfamily IAI05_16230 PF01242 6-pyruvoyl tetrahydropterin synthase IAI05_16235 PF06508 Queuosine biosynthesis protein QueC IAI05_16245 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_16245 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IAI05_16255 PF00005 ABC transporter IAI05_16255 PF17912 MalK OB fold domain IAI05_16260 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16265 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16270 PF01547 Bacterial extracellular solute-binding protein IAI05_16280 PF00483 Nucleotidyl transferase IAI05_16280 PF01050 Mannose-6-phosphate isomerase IAI05_16285 PF01011 PQQ enzyme repeat IAI05_16290 PF03466 LysR substrate binding domain IAI05_16290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_16295 PF03949 Malic enzyme, NAD binding domain IAI05_16295 PF01515 Phosphate acetyl/butaryl transferase IAI05_16295 PF00390 Malic enzyme, N-terminal domain IAI05_16300 PF00497 Bacterial extracellular solute-binding proteins, family 3 IAI05_16305 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16310 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16315 PF00005 ABC transporter IAI05_16320 PF03972 MmgE/PrpD family IAI05_16325 PF00296 Luciferase-like monooxygenase IAI05_16330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_16330 PF08447 PAS fold IAI05_16330 PF13426 PAS domain IAI05_16335 PF01266 FAD dependent oxidoreductase IAI05_16350 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IAI05_16355 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IAI05_16360 PF03480 Bacterial extracellular solute-binding protein, family 7 IAI05_16365 PF07722 Peptidase C26 IAI05_16370 PF02653 Branched-chain amino acid transport system / permease component IAI05_16375 PF00005 ABC transporter IAI05_16380 PF13407 Periplasmic binding protein domain IAI05_16390 PF01546 Peptidase family M20/M25/M40 IAI05_16395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_16405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_16405 PF00005 ABC transporter IAI05_16410 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_16410 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16415 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16420 PF03466 LysR substrate binding domain IAI05_16420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_16425 PF01112 Asparaginase IAI05_16440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_16455 PF00005 ABC transporter IAI05_16455 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_16460 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_16460 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16465 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16470 PF00196 Bacterial regulatory proteins, luxR family IAI05_16470 PF00072 Response regulator receiver domain IAI05_16475 PF03737 Aldolase/RraA IAI05_16480 PF01370 NAD dependent epimerase/dehydratase family IAI05_16485 PF00920 Dehydratase family IAI05_16490 PF17912 MalK OB fold domain IAI05_16490 PF00005 ABC transporter IAI05_16490 PF03459 TOBE domain IAI05_16495 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16500 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16510 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_16510 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IAI05_16515 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_16515 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IAI05_16520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_16520 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IAI05_16525 PF07729 FCD domain IAI05_16525 PF00392 Bacterial regulatory proteins, gntR family IAI05_16535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IAI05_16535 PF00529 HlyD membrane-fusion protein of T1SS IAI05_16540 PF00664 ABC transporter transmembrane region IAI05_16540 PF00005 ABC transporter IAI05_16560 PF12680 SnoaL-like domain IAI05_16560 PF08281 Sigma-70, region 4 IAI05_16560 PF04542 Sigma-70 region 2 IAI05_16565 PF00005 ABC transporter IAI05_16570 PF01032 FecCD transport family IAI05_16585 PF01209 ubiE/COQ5 methyltransferase family IAI05_16590 PF00127 Copper binding proteins, plastocyanin/azurin family IAI05_16595 PF00005 ABC transporter IAI05_16600 PF01032 FecCD transport family IAI05_16615 PF07687 Peptidase dimerisation domain IAI05_16615 PF01546 Peptidase family M20/M25/M40 IAI05_16620 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IAI05_16635 PF01968 Hydantoinase/oxoprolinase IAI05_16635 PF05378 Hydantoinase/oxoprolinase N-terminal region IAI05_16645 PF00171 Aldehyde dehydrogenase family IAI05_16650 PF00180 Isocitrate/isopropylmalate dehydrogenase IAI05_16655 PF00171 Aldehyde dehydrogenase family IAI05_16660 PF01266 FAD dependent oxidoreductase IAI05_16675 PF00202 Aminotransferase class-III IAI05_16685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_16690 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16695 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16695 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_16700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_16700 PF00005 ABC transporter IAI05_16705 PF01037 Lrp/AsnC ligand binding domain IAI05_16710 PF01266 FAD dependent oxidoreductase IAI05_16715 PF01266 FAD dependent oxidoreductase IAI05_16720 PF04324 BFD-like [2Fe-2S] binding domain IAI05_16720 PF07992 Pyridine nucleotide-disulphide oxidoreductase IAI05_16730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_16730 PF03466 LysR substrate binding domain IAI05_16740 PF00497 Bacterial extracellular solute-binding proteins, family 3 IAI05_16745 PF00005 ABC transporter IAI05_16755 PF01546 Peptidase family M20/M25/M40 IAI05_16755 PF07687 Peptidase dimerisation domain IAI05_16760 PF00296 Luciferase-like monooxygenase IAI05_16765 PF00296 Luciferase-like monooxygenase IAI05_16770 PF02082 Transcriptional regulator IAI05_16780 PF01613 Flavin reductase like domain IAI05_16785 PF00296 Luciferase-like monooxygenase IAI05_16800 PF00581 Rhodanese-like domain IAI05_16810 PF00296 Luciferase-like monooxygenase IAI05_16815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IAI05_16815 PF02770 Acyl-CoA dehydrogenase, middle domain IAI05_16815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IAI05_16825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_16830 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16835 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16840 PF00005 ABC transporter IAI05_16840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_16845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_16845 PF00005 ABC transporter IAI05_16850 PF00248 Aldo/keto reductase family IAI05_16860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_16860 PF03466 LysR substrate binding domain IAI05_16865 PF00296 Luciferase-like monooxygenase IAI05_16870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_16880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_16885 PF01546 Peptidase family M20/M25/M40 IAI05_16885 PF07687 Peptidase dimerisation domain IAI05_16890 PF00296 Luciferase-like monooxygenase IAI05_16895 PF05368 NmrA-like family IAI05_16905 PF00296 Luciferase-like monooxygenase IAI05_16910 PF00296 Luciferase-like monooxygenase IAI05_16915 PF13378 Enolase C-terminal domain-like IAI05_16915 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IAI05_16925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_16930 PF00005 ABC transporter IAI05_16930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_16935 PF00005 ABC transporter IAI05_16935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_16940 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16940 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_16945 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_16955 PF00392 Bacterial regulatory proteins, gntR family IAI05_16955 PF07729 FCD domain IAI05_16965 PF00561 alpha/beta hydrolase fold IAI05_16980 PF04273 Putative phosphatase (DUF442) IAI05_16980 PF00753 Metallo-beta-lactamase superfamily IAI05_16990 PF04143 Sulphur transport IAI05_17000 PF06415 BPG-independent PGAM N-terminus (iPGM_N) IAI05_17000 PF01676 Metalloenzyme superfamily IAI05_17005 PF00364 Biotin-requiring enzyme IAI05_17005 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IAI05_17005 PF02817 e3 binding domain IAI05_17010 PF02779 Transketolase, pyrimidine binding domain IAI05_17010 PF02780 Transketolase, C-terminal domain IAI05_17015 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal IAI05_17015 PF00676 Dehydrogenase E1 component IAI05_17020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IAI05_17020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IAI05_17020 PF02770 Acyl-CoA dehydrogenase, middle domain IAI05_17025 PF02803 Thiolase, C-terminal domain IAI05_17025 PF00108 Thiolase, N-terminal domain IAI05_17030 PF01037 Lrp/AsnC ligand binding domain IAI05_17035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IAI05_17035 PF02770 Acyl-CoA dehydrogenase, middle domain IAI05_17035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IAI05_17040 PF01039 Carboxyl transferase domain IAI05_17045 PF00289 Biotin carboxylase, N-terminal domain IAI05_17045 PF02785 Biotin carboxylase C-terminal domain IAI05_17045 PF00364 Biotin-requiring enzyme IAI05_17045 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IAI05_17050 PF00682 HMGL-like IAI05_17060 PF02569 Pantoate-beta-alanine ligase IAI05_17065 PF02548 Ketopantoate hydroxymethyltransferase IAI05_17070 PF01261 Xylose isomerase-like TIM barrel IAI05_17075 PF00596 Class II Aldolase and Adducin N-terminal domain IAI05_17080 PF00455 DeoR C terminal sensor domain IAI05_17080 PF08220 DeoR-like helix-turn-helix domain IAI05_17085 PF13407 Periplasmic binding protein domain IAI05_17090 PF00005 ABC transporter IAI05_17095 PF02653 Branched-chain amino acid transport system / permease component IAI05_17100 PF02653 Branched-chain amino acid transport system / permease component IAI05_17105 PF05336 L-rhamnose mutarotase IAI05_17115 PF00561 alpha/beta hydrolase fold IAI05_17125 PF00563 EAL domain IAI05_17125 PF08448 PAS fold IAI05_17125 PF08447 PAS fold IAI05_17125 PF00990 Diguanylate cyclase, GGDEF domain IAI05_17135 PF00171 Aldehyde dehydrogenase family IAI05_17140 PF08713 DNA alkylation repair enzyme IAI05_17145 PF00005 ABC transporter IAI05_17150 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_17155 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_17165 PF00378 Enoyl-CoA hydratase/isomerase IAI05_17180 PF08241 Methyltransferase domain IAI05_17190 PF00795 Carbon-nitrogen hydrolase IAI05_17195 PF00462 Glutaredoxin IAI05_17205 PF08241 Methyltransferase domain IAI05_17220 PF00293 NUDIX domain IAI05_17225 PF13508 Acetyltransferase (GNAT) domain IAI05_17225 PF00583 Acetyltransferase (GNAT) family IAI05_17230 PF01960 ArgJ family IAI05_17240 PF01043 SecA preprotein cross-linking domain IAI05_17240 PF02810 SEC-C motif IAI05_17240 PF07516 SecA Wing and Scaffold domain IAI05_17240 PF07517 SecA DEAD-like domain IAI05_17245 PF00892 EamA-like transporter family IAI05_17250 PF01757 Acyltransferase family IAI05_17310 PF01943 Polysaccharide biosynthesis protein IAI05_17325 PF01757 Acyltransferase family IAI05_17335 PF13807 G-rich domain on putative tyrosine kinase IAI05_17335 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IAI05_17335 PF02706 Chain length determinant protein IAI05_17355 PF00534 Glycosyl transferases group 1 IAI05_17355 PF13439 Glycosyltransferase Family 4 IAI05_17360 PF00534 Glycosyl transferases group 1 IAI05_17360 PF13439 Glycosyltransferase Family 4 IAI05_17375 PF03449 Transcription elongation factor, N-terminal IAI05_17375 PF01272 Transcription elongation factor, GreA/GreB, C-term IAI05_17380 PF00722 Glycosyl hydrolases family 16 IAI05_17380 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IAI05_17390 PF03009 Glycerophosphoryl diester phosphodiesterase family IAI05_17395 PF17912 MalK OB fold domain IAI05_17395 PF03459 TOBE domain IAI05_17395 PF00005 ABC transporter IAI05_17400 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_17405 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_17415 PF00480 ROK family IAI05_17415 PF01047 MarR family IAI05_17440 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding IAI05_17455 PF01381 Helix-turn-helix IAI05_17465 PF08267 Cobalamin-independent synthase, N-terminal domain IAI05_17465 PF01717 Cobalamin-independent synthase, Catalytic domain IAI05_17470 PF00005 ABC transporter IAI05_17475 PF02653 Branched-chain amino acid transport system / permease component IAI05_17480 PF13407 Periplasmic binding protein domain IAI05_17490 PF01266 FAD dependent oxidoreductase IAI05_17490 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IAI05_17500 PF02310 B12 binding domain IAI05_17500 PF01642 Methylmalonyl-CoA mutase IAI05_17505 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IAI05_17505 PF00289 Biotin carboxylase, N-terminal domain IAI05_17505 PF00364 Biotin-requiring enzyme IAI05_17505 PF18140 Propionyl-coenzyme A carboxylase BT domain IAI05_17505 PF02785 Biotin carboxylase C-terminal domain IAI05_17520 PF02798 Glutathione S-transferase, N-terminal domain IAI05_17525 PF01039 Carboxyl transferase domain IAI05_17530 PF01381 Helix-turn-helix IAI05_17530 PF06114 IrrE N-terminal-like domain IAI05_17530 PF09856 Predicted transcriptional regulator (DUF2083) IAI05_17535 PF02805 Metal binding domain of Ada IAI05_17535 PF06029 AlkA N-terminal domain IAI05_17535 PF00730 HhH-GPD superfamily base excision DNA repair protein IAI05_17535 PF12833 Helix-turn-helix domain IAI05_17540 PF00749 tRNA synthetases class I (E and Q), catalytic domain IAI05_17550 PF00106 short chain dehydrogenase IAI05_17560 PF01923 Cobalamin adenosyltransferase IAI05_17570 PF01012 Electron transfer flavoprotein domain IAI05_17575 PF00766 Electron transfer flavoprotein FAD-binding domain IAI05_17575 PF01012 Electron transfer flavoprotein domain IAI05_17580 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IAI05_17580 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IAI05_17590 PF08534 Redoxin IAI05_17595 PF00206 Lyase IAI05_17595 PF14698 Argininosuccinate lyase C-terminal IAI05_17605 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IAI05_17605 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IAI05_17615 PF00072 Response regulator receiver domain IAI05_17620 PF00156 Phosphoribosyl transferase domain IAI05_17630 PF00005 ABC transporter IAI05_17650 PF04752 ChaC-like protein IAI05_17660 PF02153 Prephenate dehydrogenase IAI05_17665 PF00155 Aminotransferase class I and II IAI05_17670 PF00155 Aminotransferase class I and II IAI05_17675 PF01209 ubiE/COQ5 methyltransferase family IAI05_17680 PF16123 Hydroxyacylglutathione hydrolase C-terminus IAI05_17680 PF00753 Metallo-beta-lactamase superfamily IAI05_17700 PF00830 Ribosomal L28 family IAI05_17705 PF02592 Putative vitamin uptake transporter IAI05_17720 PF11775 Cobalamin biosynthesis protein CobT VWA domain IAI05_17720 PF06213 Cobalamin biosynthesis protein CobT IAI05_17725 PF08406 CbbQ/NirQ/NorQ C-terminal IAI05_17725 PF12556 Cobaltochelatase CobS subunit N terminal IAI05_17725 PF07728 AAA domain (dynein-related subfamily) IAI05_17730 PF00226 DnaJ domain IAI05_17735 PF01722 BolA-like protein IAI05_17745 PF01761 3-dehydroquinate synthase IAI05_17750 PF01202 Shikimate kinase IAI05_17760 PF00589 Phage integrase family IAI05_17760 PF02899 Phage integrase, N-terminal SAM-like domain IAI05_17765 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IAI05_17770 PF03734 L,D-transpeptidase catalytic domain IAI05_17775 PF01206 Sulfurtransferase TusA IAI05_17775 PF00581 Rhodanese-like domain IAI05_17780 PF07683 Cobalamin synthesis protein cobW C-terminal domain IAI05_17780 PF02492 CobW/HypB/UreG, nucleotide-binding domain IAI05_17785 PF07943 Penicillin-binding protein 5, C-terminal domain IAI05_17785 PF00768 D-alanyl-D-alanine carboxypeptidase IAI05_17790 PF01546 Peptidase family M20/M25/M40 IAI05_17790 PF07687 Peptidase dimerisation domain IAI05_17800 PF06832 Penicillin-Binding Protein C-terminus Family IAI05_17800 PF00912 Transglycosylase IAI05_17800 PF00905 Penicillin binding protein transpeptidase domain IAI05_17805 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain IAI05_17805 PF00207 Alpha-2-macroglobulin family IAI05_17805 PF07703 Alpha-2-macroglobulin bait region domain IAI05_17805 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain IAI05_17805 PF11974 Bacterial alpha-2-macroglobulin MG3 domain IAI05_17805 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain IAI05_17805 PF07678 A-macroglobulin TED domain IAI05_17805 PF17962 Bacterial macroglobulin domain 6 IAI05_17805 PF01835 MG2 domain IAI05_17810 PF03966 Trm112p-like protein IAI05_17820 PF00085 Thioredoxin IAI05_17895 PF02530 Porin subfamily IAI05_17950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IAI05_17950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IAI05_17950 PF01842 ACT domain IAI05_17960 PF13505 Outer membrane protein beta-barrel domain IAI05_17965 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IAI05_17965 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IAI05_17965 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IAI05_17965 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IAI05_17970 PF17862 AAA+ lid domain IAI05_17970 PF06480 FtsH Extracellular IAI05_17970 PF01434 Peptidase family M41 IAI05_17970 PF00004 ATPase family associated with various cellular activities (AAA) IAI05_17975 PF01171 PP-loop family IAI05_17985 PF00691 OmpA family IAI05_17990 PF07676 WD40-like Beta Propeller Repeat IAI05_17990 PF04052 TolB amino-terminal domain IAI05_18000 PF02472 Biopolymer transport protein ExbD/TolR IAI05_18005 PF01618 MotA/TolQ/ExbB proton channel family IAI05_18010 PF03061 Thioesterase superfamily IAI05_18015 PF00293 NUDIX domain IAI05_18020 PF00293 NUDIX domain IAI05_18035 PF17864 RuvB AAA lid domain IAI05_18035 PF05491 RuvB C-terminal winged helix domain IAI05_18035 PF05496 Holliday junction DNA helicase RuvB P-loop domain IAI05_18040 PF07499 RuvA, C-terminal domain IAI05_18040 PF01330 RuvA N terminal domain IAI05_18045 PF02075 Crossover junction endodeoxyribonuclease RuvC IAI05_18050 PF00672 HAMP domain IAI05_18050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_18050 PF02203 Tar ligand binding domain homologue IAI05_18055 PF00296 Luciferase-like monooxygenase IAI05_18060 PF01709 Transcriptional regulator IAI05_18075 PF13277 YmdB-like protein IAI05_18085 PF01595 Cyclin M transmembrane N-terminal domain IAI05_18085 PF03471 Transporter associated domain IAI05_18085 PF00571 CBS domain IAI05_18105 PF02780 Transketolase, C-terminal domain IAI05_18105 PF02779 Transketolase, pyrimidine binding domain IAI05_18105 PF00456 Transketolase, thiamine diphosphate binding domain IAI05_18110 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IAI05_18110 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IAI05_18120 PF03471 Transporter associated domain IAI05_18120 PF00999 Sodium/hydrogen exchanger family IAI05_18125 PF00162 Phosphoglycerate kinase IAI05_18130 PF00274 Fructose-bisphosphate aldolase class-I IAI05_18155 PF01197 Ribosomal protein L31 IAI05_18160 PF00664 ABC transporter transmembrane region IAI05_18160 PF00005 ABC transporter IAI05_18165 PF00890 FAD binding domain IAI05_18170 PF00691 OmpA family IAI05_18170 PF01389 OmpA-like transmembrane domain IAI05_18180 PF00459 Inositol monophosphatase family IAI05_18210 PF00731 AIR carboxylase IAI05_18215 PF02222 ATP-grasp domain IAI05_18215 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain IAI05_18220 PF00444 Ribosomal protein L36 IAI05_18230 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) IAI05_18250 PF00224 Pyruvate kinase, barrel domain IAI05_18250 PF02887 Pyruvate kinase, alpha/beta domain IAI05_18255 PF05951 Bacterial protein of unknown function (DUF882) IAI05_18260 PF00072 Response regulator receiver domain IAI05_18260 PF00158 Sigma-54 interaction domain IAI05_18260 PF02954 Bacterial regulatory protein, Fis family IAI05_18265 PF01432 Peptidase family M3 IAI05_18265 PF08439 Oligopeptidase F IAI05_18270 PF01063 Amino-transferase class IV IAI05_18275 PF00990 Diguanylate cyclase, GGDEF domain IAI05_18280 PF03435 Saccharopine dehydrogenase NADP binding domain IAI05_18280 PF16653 Saccharopine dehydrogenase C-terminal domain IAI05_18290 PF00149 Calcineurin-like phosphoesterase IAI05_18290 PF02872 5'-nucleotidase, C-terminal domain IAI05_18295 PF00762 Ferrochelatase IAI05_18300 PF16200 C-terminal region of band_7 IAI05_18300 PF01145 SPFH domain / Band 7 family IAI05_18310 PF01380 SIS domain IAI05_18310 PF00571 CBS domain IAI05_18325 PF00483 Nucleotidyl transferase IAI05_18330 PF13406 Transglycosylase SLT domain IAI05_18340 PF00486 Transcriptional regulatory protein, C terminal IAI05_18340 PF00072 Response regulator receiver domain IAI05_18345 PF00512 His Kinase A (phospho-acceptor) domain IAI05_18345 PF00672 HAMP domain IAI05_18345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_18350 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IAI05_18350 PF07992 Pyridine nucleotide-disulphide oxidoreductase IAI05_18360 PF04898 Glutamate synthase central domain IAI05_18360 PF01645 Conserved region in glutamate synthase IAI05_18360 PF01493 GXGXG motif IAI05_18360 PF00310 Glutamine amidotransferases class-II IAI05_18365 PF01212 Beta-eliminating lyase IAI05_18370 PF00486 Transcriptional regulatory protein, C terminal IAI05_18370 PF00072 Response regulator receiver domain IAI05_18375 PF00512 His Kinase A (phospho-acceptor) domain IAI05_18375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_18375 PF02702 Osmosensitive K+ channel His kinase sensor domain IAI05_18375 PF13493 Domain of unknown function (DUF4118) IAI05_18375 PF13492 GAF domain IAI05_18380 PF02669 K+-transporting ATPase, c chain IAI05_18395 PF03814 Potassium-transporting ATPase A subunit IAI05_18405 PF00710 Asparaginase, N-terminal IAI05_18405 PF17763 Glutaminase/Asparaginase C-terminal domain IAI05_18410 PF00324 Amino acid permease IAI05_18415 PF00206 Lyase IAI05_18415 PF10415 Fumarase C C-terminus IAI05_18420 PF00392 Bacterial regulatory proteins, gntR family IAI05_18420 PF07729 FCD domain IAI05_18425 PF00873 AcrB/AcrD/AcrF family IAI05_18435 PF00529 HlyD membrane-fusion protein of T1SS IAI05_18435 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IAI05_18440 PF13977 BetI-type transcriptional repressor, C-terminal IAI05_18440 PF00440 Bacterial regulatory proteins, tetR family IAI05_18445 PF00392 Bacterial regulatory proteins, gntR family IAI05_18445 PF07702 UTRA domain IAI05_18460 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_18465 PF00571 CBS domain IAI05_18465 PF00005 ABC transporter IAI05_18470 PF00221 Aromatic amino acid lyase IAI05_18475 PF00356 Bacterial regulatory proteins, lacI family IAI05_18485 PF02653 Branched-chain amino acid transport system / permease component IAI05_18490 PF00005 ABC transporter IAI05_18495 PF01261 Xylose isomerase-like TIM barrel IAI05_18500 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_18500 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IAI05_18505 PF01261 Xylose isomerase-like TIM barrel IAI05_18510 PF01261 Xylose isomerase-like TIM barrel IAI05_18535 PF02384 N-6 DNA Methylase IAI05_18535 PF12161 HsdM N-terminal domain IAI05_18545 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) IAI05_18545 PF11867 Domain of unknown function (DUF3387) IAI05_18545 PF18766 SWI2/SNF2 ATPase IAI05_18550 PF01863 Protein of unknown function DUF45 IAI05_18555 PF02796 Helix-turn-helix domain of resolvase IAI05_18555 PF00239 Resolvase, N terminal domain IAI05_18575 PF00589 Phage integrase family IAI05_18590 PF00701 Dihydrodipicolinate synthetase family IAI05_18595 PF00005 ABC transporter IAI05_18595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_18600 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_18600 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_18605 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_18610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_18620 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IAI05_18625 PF00465 Iron-containing alcohol dehydrogenase IAI05_18630 PF00392 Bacterial regulatory proteins, gntR family IAI05_18630 PF07729 FCD domain IAI05_18645 PF03061 Thioesterase superfamily IAI05_18665 PF04168 A predicted alpha-helical domain with a conserved ER motif. IAI05_18665 PF14403 Circularly permuted ATP-grasp type 2 IAI05_18670 PF08379 Bacterial transglutaminase-like N-terminal region IAI05_18670 PF01841 Transglutaminase-like superfamily IAI05_18680 PF12848 ABC transporter IAI05_18680 PF00005 ABC transporter IAI05_18685 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IAI05_18685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IAI05_18690 PF07729 FCD domain IAI05_18690 PF00392 Bacterial regulatory proteins, gntR family IAI05_18705 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_18710 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_18715 PF07470 Glycosyl Hydrolase Family 88 IAI05_18720 PF03459 TOBE domain IAI05_18720 PF00005 ABC transporter IAI05_18720 PF17912 MalK OB fold domain IAI05_18730 PF01547 Bacterial extracellular solute-binding protein IAI05_18740 PF00132 Bacterial transferase hexapeptide (six repeats) IAI05_18745 PF01070 FMN-dependent dehydrogenase IAI05_18760 PF08240 Alcohol dehydrogenase GroES-like domain IAI05_18760 PF00107 Zinc-binding dehydrogenase IAI05_18765 PF03737 Aldolase/RraA IAI05_18770 PF00497 Bacterial extracellular solute-binding proteins, family 3 IAI05_18775 PF00005 ABC transporter IAI05_18780 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_18785 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_18790 PF00106 short chain dehydrogenase IAI05_18795 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IAI05_18795 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IAI05_18805 PF01370 NAD dependent epimerase/dehydratase family IAI05_18810 PF01970 Tripartite tricarboxylate transporter TctA family IAI05_18820 PF03737 Aldolase/RraA IAI05_18825 PF03401 Tripartite tricarboxylate transporter family receptor IAI05_18830 PF03466 LysR substrate binding domain IAI05_18830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_18835 PF00892 EamA-like transporter family IAI05_18840 PF00892 EamA-like transporter family IAI05_18845 PF00364 Biotin-requiring enzyme IAI05_18850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IAI05_18850 PF00289 Biotin carboxylase, N-terminal domain IAI05_18850 PF02785 Biotin carboxylase C-terminal domain IAI05_18860 PF02682 Carboxyltransferase domain, subdomain C and D IAI05_18865 PF02626 Carboxyltransferase domain, subdomain A and B IAI05_18870 PF03746 LamB/YcsF family IAI05_18875 PF08402 TOBE domain IAI05_18875 PF00005 ABC transporter IAI05_18885 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_18890 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_18895 PF00155 Aminotransferase class I and II IAI05_18900 PF00106 short chain dehydrogenase IAI05_18900 PF00300 Histidine phosphatase superfamily (branch 1) IAI05_18905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_18905 PF03466 LysR substrate binding domain IAI05_18910 PF00672 HAMP domain IAI05_18910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_18915 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IAI05_18915 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IAI05_18920 PF01791 DeoC/LacD family aldolase IAI05_18925 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IAI05_18925 PF01266 FAD dependent oxidoreductase IAI05_18930 PF00248 Aldo/keto reductase family IAI05_18940 PF02653 Branched-chain amino acid transport system / permease component IAI05_18945 PF00005 ABC transporter IAI05_18950 PF13407 Periplasmic binding protein domain IAI05_18960 PF00072 Response regulator receiver domain IAI05_18970 PF00459 Inositol monophosphatase family IAI05_18985 PF00011 Hsp20/alpha crystallin family IAI05_18990 PF13593 SBF-like CPA transporter family (DUF4137) IAI05_18995 PF03466 LysR substrate binding domain IAI05_18995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_19000 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IAI05_19000 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IAI05_19015 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_19020 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_19025 PF00005 ABC transporter IAI05_19025 PF17912 MalK OB fold domain IAI05_19030 PF17912 MalK OB fold domain IAI05_19030 PF00005 ABC transporter IAI05_19035 PF01266 FAD dependent oxidoreductase IAI05_19035 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IAI05_19040 PF08220 DeoR-like helix-turn-helix domain IAI05_19040 PF00455 DeoR C terminal sensor domain IAI05_19045 PF10414 Sirohaem synthase dimerisation region IAI05_19045 PF14824 Sirohaem biosynthesis protein central IAI05_19045 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IAI05_19050 PF01568 Molydopterin dinucleotide binding domain IAI05_19050 PF00384 Molybdopterin oxidoreductase IAI05_19050 PF04324 BFD-like [2Fe-2S] binding domain IAI05_19050 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IAI05_19060 PF04324 BFD-like [2Fe-2S] binding domain IAI05_19060 PF18267 Rubredoxin NAD+ reductase C-terminal domain IAI05_19060 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IAI05_19060 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IAI05_19060 PF07992 Pyridine nucleotide-disulphide oxidoreductase IAI05_19065 PF00005 ABC transporter IAI05_19070 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_19085 PF08376 Nitrate and nitrite sensing IAI05_19085 PF03861 ANTAR domain IAI05_19090 PF00392 Bacterial regulatory proteins, gntR family IAI05_19090 PF07729 FCD domain IAI05_19095 PF01566 Natural resistance-associated macrophage protein IAI05_19100 PF03746 LamB/YcsF family IAI05_19105 PF07286 Protein of unknown function (DUF1445) IAI05_19110 PF02682 Carboxyltransferase domain, subdomain C and D IAI05_19115 PF02785 Biotin carboxylase C-terminal domain IAI05_19115 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IAI05_19115 PF00364 Biotin-requiring enzyme IAI05_19115 PF00289 Biotin carboxylase, N-terminal domain IAI05_19120 PF00128 Alpha amylase, catalytic domain IAI05_19120 PF02806 Alpha amylase, C-terminal all-beta domain IAI05_19125 PF00376 MerR family regulatory protein IAI05_19125 PF09278 MerR, DNA binding IAI05_19130 PF07715 TonB-dependent Receptor Plug Domain IAI05_19130 PF00593 TonB dependent receptor IAI05_19135 PF02885 Glycosyl transferase family, helical bundle domain IAI05_19135 PF00591 Glycosyl transferase family, a/b domain IAI05_19140 PF06772 Bacterial low temperature requirement A protein (LtrA) IAI05_19155 PF03428 Replication protein C N-terminal domain IAI05_19155 PF11800 Replication protein C C-terminal region IAI05_19160 PF02195 ParB-like nuclease domain IAI05_19160 PF07506 RepB plasmid partitioning protein IAI05_19165 PF13614 AAA domain IAI05_19175 PF01042 Endoribonuclease L-PSP IAI05_19180 PF01168 Alanine racemase, N-terminal domain IAI05_19180 PF14031 Putative serine dehydratase domain IAI05_19185 PF07171 MlrC C-terminus IAI05_19185 PF07364 Metallopeptidase family M81 IAI05_19190 PF05962 HutD IAI05_19195 PF17391 Urocanase N-terminal domain IAI05_19195 PF17392 Urocanase C-terminal domain IAI05_19195 PF01175 Urocanase Rossmann-like domain IAI05_19205 PF00221 Aromatic amino acid lyase IAI05_19210 PF01979 Amidohydrolase family IAI05_19215 PF01979 Amidohydrolase family IAI05_19260 PF02525 Flavodoxin-like fold IAI05_19270 PF01810 LysE type translocator IAI05_19285 PF00440 Bacterial regulatory proteins, tetR family IAI05_19290 PF00106 short chain dehydrogenase IAI05_19295 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IAI05_19300 PF00106 short chain dehydrogenase IAI05_19305 PF00561 alpha/beta hydrolase fold IAI05_19310 PF08240 Alcohol dehydrogenase GroES-like domain IAI05_19310 PF00107 Zinc-binding dehydrogenase IAI05_19325 PF00313 'Cold-shock' DNA-binding domain IAI05_19345 PF18011 C-terminal domain found in long catalases IAI05_19345 PF00199 Catalase IAI05_19345 PF06628 Catalase-related immune-responsive IAI05_19370 PF07536 HWE histidine kinase IAI05_19370 PF13581 Histidine kinase-like ATPase domain IAI05_19370 PF13426 PAS domain IAI05_19380 PF02371 Transposase IS116/IS110/IS902 family IAI05_19380 PF01548 Transposase IAI05_19400 PF00005 ABC transporter IAI05_19405 PF02653 Branched-chain amino acid transport system / permease component IAI05_19410 PF02653 Branched-chain amino acid transport system / permease component IAI05_19415 PF00296 Luciferase-like monooxygenase IAI05_19425 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IAI05_19425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IAI05_19430 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IAI05_19430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IAI05_19430 PF02770 Acyl-CoA dehydrogenase, middle domain IAI05_19435 PF00248 Aldo/keto reductase family IAI05_19450 PF02653 Branched-chain amino acid transport system / permease component IAI05_19455 PF00005 ABC transporter IAI05_19460 PF13407 Periplasmic binding protein domain IAI05_19470 PF00890 FAD binding domain IAI05_19470 PF02910 Fumarate reductase flavoprotein C-term IAI05_19480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_19480 PF00005 ABC transporter IAI05_19485 PF00005 ABC transporter IAI05_19485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_19490 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_19490 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_19495 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_19500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_19520 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_19525 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_19530 PF00497 Bacterial extracellular solute-binding proteins, family 3 IAI05_19545 PF00091 Tubulin/FtsZ family, GTPase domain IAI05_19545 PF12327 FtsZ family, C-terminal domain IAI05_19550 PF02801 Beta-ketoacyl synthase, C-terminal domain IAI05_19550 PF00109 Beta-ketoacyl synthase, N-terminal domain IAI05_19555 PF00440 Bacterial regulatory proteins, tetR family IAI05_19560 PF13533 Biotin-lipoyl like IAI05_19565 PF00873 AcrB/AcrD/AcrF family IAI05_19570 PF02798 Glutathione S-transferase, N-terminal domain IAI05_19575 PF00106 short chain dehydrogenase IAI05_19580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_19580 PF00005 ABC transporter IAI05_19585 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_19585 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_19590 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_19595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_19600 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_19605 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_19615 PF13533 Biotin-lipoyl like IAI05_19630 PF12833 Helix-turn-helix domain IAI05_19630 PF02311 AraC-like ligand binding domain IAI05_19635 PF00440 Bacterial regulatory proteins, tetR family IAI05_19665 PF01047 MarR family IAI05_19670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_19670 PF03466 LysR substrate binding domain IAI05_19675 PF04303 PrpF protein IAI05_19685 PF00005 ABC transporter IAI05_19690 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_19705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IAI05_19705 PF00672 HAMP domain IAI05_19715 PF03275 UDP-galactopyranose mutase IAI05_19725 PF00535 Glycosyl transferase family 2 IAI05_19735 PF03466 LysR substrate binding domain IAI05_19735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_19740 PF07690 Major Facilitator Superfamily IAI05_19750 PF02129 X-Pro dipeptidyl-peptidase (S15 family) IAI05_19755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_19755 PF03466 LysR substrate binding domain IAI05_19760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IAI05_19775 PF07969 Amidohydrolase family IAI05_19795 PF03466 LysR substrate binding domain IAI05_19795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_19800 PF07690 Major Facilitator Superfamily IAI05_19810 PF00672 HAMP domain IAI05_19810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_19810 PF00512 His Kinase A (phospho-acceptor) domain IAI05_19815 PF00072 Response regulator receiver domain IAI05_19815 PF00486 Transcriptional regulatory protein, C terminal IAI05_19820 PF01569 PAP2 superfamily IAI05_19865 PF13673 Acetyltransferase (GNAT) domain IAI05_19870 PF04055 Radical SAM superfamily IAI05_19870 PF06968 Biotin and Thiamin Synthesis associated domain IAI05_19875 PF00155 Aminotransferase class I and II IAI05_19885 PF00202 Aminotransferase class-III IAI05_19890 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IAI05_19890 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IAI05_19905 PF00491 Arginase family IAI05_19910 PF02423 Ornithine cyclodeaminase/mu-crystallin family IAI05_19915 PF00892 EamA-like transporter family IAI05_19920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_19920 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IAI05_19925 PF00211 Adenylate and Guanylate cyclase catalytic domain IAI05_19925 PF00672 HAMP domain IAI05_19935 PF11972 HTH DNA binding domain IAI05_19935 PF07756 Protein of unknown function (DUF1612) IAI05_19940 PF00083 Sugar (and other) transporter IAI05_19945 PF00512 His Kinase A (phospho-acceptor) domain IAI05_19945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_19950 PF00486 Transcriptional regulatory protein, C terminal IAI05_19950 PF00072 Response regulator receiver domain IAI05_19955 PF08019 Phosphoethanolamine transferase EptA/EptB IAI05_19955 PF00884 Sulfatase IAI05_19965 PF03466 LysR substrate binding domain IAI05_19965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_19970 PF00593 TonB dependent receptor IAI05_19970 PF07715 TonB-dependent Receptor Plug Domain IAI05_19980 PF01032 FecCD transport family IAI05_19985 PF00005 ABC transporter IAI05_19995 PF00034 Cytochrome c IAI05_20000 PF02631 RecX family IAI05_20005 PF08450 SMP-30/Gluconolactonase/LRE-like region IAI05_20015 PF02653 Branched-chain amino acid transport system / permease component IAI05_20020 PF00005 ABC transporter IAI05_20025 PF13407 Periplasmic binding protein domain IAI05_20030 PF07730 Histidine kinase IAI05_20030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_20035 PF00196 Bacterial regulatory proteins, luxR family IAI05_20035 PF00072 Response regulator receiver domain IAI05_20045 PF07995 Glucose / Sorbosone dehydrogenase IAI05_20055 PF04445 Putative SAM-dependent methyltransferase IAI05_20060 PF00849 RNA pseudouridylate synthase IAI05_20065 PF01205 Uncharacterized protein family UPF0029 IAI05_20070 PF07992 Pyridine nucleotide-disulphide oxidoreductase IAI05_20070 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IAI05_20075 PF00571 CBS domain IAI05_20075 PF00005 ABC transporter IAI05_20080 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_20095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_20095 PF13426 PAS domain IAI05_20095 PF00072 Response regulator receiver domain IAI05_20100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IAI05_20105 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IAI05_20105 PF02706 Chain length determinant protein IAI05_20105 PF13807 G-rich domain on putative tyrosine kinase IAI05_20110 PF00483 Nucleotidyl transferase IAI05_20115 PF00535 Glycosyl transferase family 2 IAI05_20120 PF00535 Glycosyl transferase family 2 IAI05_20125 PF00535 Glycosyl transferase family 2 IAI05_20135 PF00722 Glycosyl hydrolases family 16 IAI05_20140 PF01757 Acyltransferase family IAI05_20145 PF01943 Polysaccharide biosynthesis protein IAI05_20150 PF00535 Glycosyl transferase family 2 IAI05_20155 PF04230 Polysaccharide pyruvyl transferase IAI05_20160 PF00535 Glycosyl transferase family 2 IAI05_20165 PF11089 Exopolysaccharide production repressor IAI05_20180 PF01165 Ribosomal protein S21 IAI05_20185 PF01266 FAD dependent oxidoreductase IAI05_20200 PF08669 Glycine cleavage T-protein C-terminal barrel domain IAI05_20200 PF01571 Aminomethyltransferase folate-binding domain IAI05_20200 PF07992 Pyridine nucleotide-disulphide oxidoreductase IAI05_20200 PF17806 Sarcosine oxidase A3 domain IAI05_20225 PF01575 MaoC like domain IAI05_20230 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IAI05_20230 PF18390 Glycogen debranching enzyme C-terminal domain IAI05_20230 PF00128 Alpha amylase, catalytic domain IAI05_20235 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IAI05_20235 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IAI05_20235 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IAI05_20235 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IAI05_20240 PF08323 Starch synthase catalytic domain IAI05_20240 PF00534 Glycosyl transferases group 1 IAI05_20245 PF00483 Nucleotidyl transferase IAI05_20250 PF02806 Alpha amylase, C-terminal all-beta domain IAI05_20250 PF00128 Alpha amylase, catalytic domain IAI05_20250 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IAI05_20255 PF00343 Carbohydrate phosphorylase IAI05_20270 PF01177 Asp/Glu/Hydantoin racemase IAI05_20275 PF01037 Lrp/AsnC ligand binding domain IAI05_20285 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IAI05_20285 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IAI05_20295 PF00107 Zinc-binding dehydrogenase IAI05_20295 PF08240 Alcohol dehydrogenase GroES-like domain IAI05_20305 PF00005 ABC transporter IAI05_20305 PF00664 ABC transporter transmembrane region IAI05_20310 PF00005 ABC transporter IAI05_20310 PF00664 ABC transporter transmembrane region IAI05_20315 PF01654 Cytochrome bd terminal oxidase subunit I IAI05_20320 PF02322 Cytochrome bd terminal oxidase subunit II IAI05_20325 PF08173 Membrane bound YbgT-like protein IAI05_20345 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain IAI05_20345 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain IAI05_20350 PF02910 Fumarate reductase flavoprotein C-term IAI05_20350 PF00890 FAD binding domain IAI05_20355 PF02445 Quinolinate synthetase A protein IAI05_20385 PF02224 Cytidylate kinase IAI05_20390 PF00575 S1 RNA binding domain IAI05_20420 PF00106 short chain dehydrogenase IAI05_20425 PF00557 Metallopeptidase family M24 IAI05_20425 PF01321 Creatinase/Prolidase N-terminal domain IAI05_20430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_20435 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_20440 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_20440 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_20445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_20445 PF00005 ABC transporter IAI05_20450 PF00005 ABC transporter IAI05_20450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_20455 PF01232 Mannitol dehydrogenase Rossmann domain IAI05_20455 PF08125 Mannitol dehydrogenase C-terminal domain IAI05_20460 PF07729 FCD domain IAI05_20460 PF00392 Bacterial regulatory proteins, gntR family IAI05_20465 PF13378 Enolase C-terminal domain-like IAI05_20465 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IAI05_20470 PF00296 Luciferase-like monooxygenase IAI05_20485 PF12399 Branched-chain amino acid ATP-binding cassette transporter IAI05_20485 PF00005 ABC transporter IAI05_20490 PF00005 ABC transporter IAI05_20495 PF02653 Branched-chain amino acid transport system / permease component IAI05_20500 PF02653 Branched-chain amino acid transport system / permease component IAI05_20500 PF11862 Domain of unknown function (DUF3382) IAI05_20505 PF00732 GMC oxidoreductase IAI05_20505 PF05199 GMC oxidoreductase IAI05_20510 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IAI05_20510 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IAI05_20515 PF00501 AMP-binding enzyme IAI05_20515 PF13193 AMP-binding enzyme C-terminal domain IAI05_20535 PF01011 PQQ enzyme repeat IAI05_20540 PF05974 Domain of unknown function (DUF892) IAI05_20550 PF03275 UDP-galactopyranose mutase IAI05_20570 PF01965 DJ-1/PfpI family IAI05_20590 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IAI05_20590 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IAI05_20595 PF16363 GDP-mannose 4,6 dehydratase IAI05_20600 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IAI05_20600 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IAI05_20600 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IAI05_20615 PF13409 Glutathione S-transferase, N-terminal domain IAI05_20620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_20620 PF03466 LysR substrate binding domain IAI05_20625 PF00171 Aldehyde dehydrogenase family IAI05_20630 PF09084 NMT1/THI5 like IAI05_20635 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_20640 PF00005 ABC transporter IAI05_20645 PF18327 Proline utilization A proline dehydrogenase N-terminal domain IAI05_20645 PF14850 DNA-binding domain of Proline dehydrogenase IAI05_20645 PF01619 Proline dehydrogenase IAI05_20645 PF00171 Aldehyde dehydrogenase family IAI05_20650 PF01037 Lrp/AsnC ligand binding domain IAI05_20655 PF04542 Sigma-70 region 2 IAI05_20655 PF08281 Sigma-70, region 4 IAI05_20665 PF00072 Response regulator receiver domain IAI05_20670 PF07536 HWE histidine kinase IAI05_20670 PF08447 PAS fold IAI05_20670 PF13426 PAS domain IAI05_20675 PF13581 Histidine kinase-like ATPase domain IAI05_20675 PF13426 PAS domain IAI05_20675 PF07536 HWE histidine kinase IAI05_20685 PF16363 GDP-mannose 4,6 dehydratase IAI05_20700 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IAI05_20705 PF16653 Saccharopine dehydrogenase C-terminal domain IAI05_20705 PF03435 Saccharopine dehydrogenase NADP binding domain IAI05_20710 PF00271 Helicase conserved C-terminal domain IAI05_20710 PF00270 DEAD/DEAH box helicase IAI05_20715 PF00696 Amino acid kinase family IAI05_20715 PF13840 ACT domain IAI05_20715 PF01842 ACT domain IAI05_20720 PF02896 PEP-utilising enzyme, TIM barrel domain IAI05_20720 PF00391 PEP-utilising enzyme, mobile domain IAI05_20720 PF01590 GAF domain IAI05_20720 PF05524 PEP-utilising enzyme, N-terminal IAI05_20725 PF00472 RF-1 domain IAI05_20725 PF03462 PCRF domain IAI05_20730 PF17827 PrmC N-terminal domain IAI05_20730 PF05175 Methyltransferase small domain IAI05_20740 PF00004 ATPase family associated with various cellular activities (AAA) IAI05_20740 PF07724 AAA domain (Cdc48 subfamily) IAI05_20740 PF02861 Clp amino terminal domain, pathogenicity island component IAI05_20740 PF17871 AAA lid domain IAI05_20740 PF10431 C-terminal, D2-small domain, of ClpB protein IAI05_20745 PF10145 Phage-related minor tail protein IAI05_20745 PF01464 Transglycosylase SLT domain IAI05_20745 PF01551 Peptidase family M23 IAI05_20815 PF01434 Peptidase family M41 IAI05_20815 PF06480 FtsH Extracellular IAI05_20815 PF17862 AAA+ lid domain IAI05_20815 PF00004 ATPase family associated with various cellular activities (AAA) IAI05_20820 PF00004 ATPase family associated with various cellular activities (AAA) IAI05_20820 PF17862 AAA+ lid domain IAI05_20820 PF01434 Peptidase family M41 IAI05_20825 PF08676 MutL C terminal dimerisation domain IAI05_20825 PF01119 DNA mismatch repair protein, C-terminal domain IAI05_20835 PF02463 RecF/RecN/SMC N terminal domain IAI05_20840 PF13361 UvrD-like helicase C-terminal domain IAI05_20840 PF00580 UvrD/REP helicase N-terminal domain IAI05_20850 PF01546 Peptidase family M20/M25/M40 IAI05_20850 PF07687 Peptidase dimerisation domain IAI05_20855 PF03466 LysR substrate binding domain IAI05_20855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_20860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_20870 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_20875 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_20875 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_20880 PF00005 ABC transporter IAI05_20880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_20885 PF07690 Major Facilitator Superfamily IAI05_20905 PF03466 LysR substrate binding domain IAI05_20905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_20915 PF00529 HlyD membrane-fusion protein of T1SS IAI05_20915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IAI05_20925 PF00005 ABC transporter IAI05_20925 PF00664 ABC transporter transmembrane region IAI05_20935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_20935 PF05384 Sensor protein DegS IAI05_20935 PF07730 Histidine kinase IAI05_20940 PF00196 Bacterial regulatory proteins, luxR family IAI05_20940 PF00072 Response regulator receiver domain IAI05_20945 PF00196 Bacterial regulatory proteins, luxR family IAI05_20945 PF00072 Response regulator receiver domain IAI05_20950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_20950 PF13493 Domain of unknown function (DUF4118) IAI05_20950 PF00989 PAS fold IAI05_20950 PF00512 His Kinase A (phospho-acceptor) domain IAI05_20950 PF08447 PAS fold IAI05_20950 PF13426 PAS domain IAI05_20955 PF00753 Metallo-beta-lactamase superfamily IAI05_20970 PF02733 Dak1 domain IAI05_20975 PF01037 Lrp/AsnC ligand binding domain IAI05_20980 PF01053 Cys/Met metabolism PLP-dependent enzyme IAI05_20995 PF03358 NADPH-dependent FMN reductase IAI05_21000 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IAI05_21005 PF00296 Luciferase-like monooxygenase IAI05_21015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_21015 PF00005 ABC transporter IAI05_21020 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_21020 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_21025 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_21030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_21035 PF00384 Molybdopterin oxidoreductase IAI05_21035 PF01568 Molydopterin dinucleotide binding domain IAI05_21040 PF02913 FAD linked oxidases, C-terminal domain IAI05_21040 PF01565 FAD binding domain IAI05_21045 PF01323 DSBA-like thioredoxin domain IAI05_21060 PF00881 Nitroreductase family IAI05_21065 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_21080 PF03466 LysR substrate binding domain IAI05_21080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_21090 PF00155 Aminotransferase class I and II IAI05_21090 PF00392 Bacterial regulatory proteins, gntR family IAI05_21105 PF02567 Phenazine biosynthesis-like protein IAI05_21110 PF00293 NUDIX domain IAI05_21115 PF05163 DinB family IAI05_21120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_21120 PF03466 LysR substrate binding domain IAI05_21130 PF03466 LysR substrate binding domain IAI05_21130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_21135 PF00857 Isochorismatase family IAI05_21140 PF03466 LysR substrate binding domain IAI05_21140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_21145 PF00795 Carbon-nitrogen hydrolase IAI05_21160 PF08402 TOBE domain IAI05_21160 PF00005 ABC transporter IAI05_21165 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_21170 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_21175 PF04324 BFD-like [2Fe-2S] binding domain IAI05_21175 PF01266 FAD dependent oxidoreductase IAI05_21180 PF04324 BFD-like [2Fe-2S] binding domain IAI05_21180 PF07992 Pyridine nucleotide-disulphide oxidoreductase IAI05_21185 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IAI05_21185 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IAI05_21200 PF00005 ABC transporter IAI05_21205 PF01032 FecCD transport family IAI05_21210 PF01032 FecCD transport family IAI05_21215 PF01497 Periplasmic binding protein IAI05_21220 PF07715 TonB-dependent Receptor Plug Domain IAI05_21225 PF03928 Haem-degrading IAI05_21230 PF00356 Bacterial regulatory proteins, lacI family IAI05_21235 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IAI05_21235 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_21240 PF01144 Coenzyme A transferase IAI05_21245 PF00378 Enoyl-CoA hydratase/isomerase IAI05_21250 PF00171 Aldehyde dehydrogenase family IAI05_21255 PF01547 Bacterial extracellular solute-binding protein IAI05_21260 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_21265 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_21270 PF17912 MalK OB fold domain IAI05_21270 PF00005 ABC transporter IAI05_21270 PF03459 TOBE domain IAI05_21275 PF05199 GMC oxidoreductase IAI05_21275 PF00732 GMC oxidoreductase IAI05_21280 PF05199 GMC oxidoreductase IAI05_21280 PF00732 GMC oxidoreductase IAI05_21285 PF00890 FAD binding domain IAI05_21285 PF02910 Fumarate reductase flavoprotein C-term IAI05_21295 PF00034 Cytochrome c IAI05_21300 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IAI05_21305 PF00115 Cytochrome C and Quinol oxidase polypeptide I IAI05_21310 PF00510 Cytochrome c oxidase subunit III IAI05_21315 PF00510 Cytochrome c oxidase subunit III IAI05_21325 PF03466 LysR substrate binding domain IAI05_21325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_21335 PF02687 FtsX-like permease family IAI05_21335 PF00005 ABC transporter IAI05_21335 PF12704 MacB-like periplasmic core domain IAI05_21355 PF00486 Transcriptional regulatory protein, C terminal IAI05_21355 PF00072 Response regulator receiver domain IAI05_21360 PF00512 His Kinase A (phospho-acceptor) domain IAI05_21360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_21360 PF00672 HAMP domain IAI05_21370 PF00196 Bacterial regulatory proteins, luxR family IAI05_21390 PF08402 TOBE domain IAI05_21390 PF00005 ABC transporter IAI05_21400 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_21405 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_21410 PF01177 Asp/Glu/Hydantoin racemase IAI05_21420 PF00480 ROK family IAI05_21420 PF01325 Iron dependent repressor, N-terminal DNA binding domain IAI05_21425 PF13407 Periplasmic binding protein domain IAI05_21430 PF02653 Branched-chain amino acid transport system / permease component IAI05_21435 PF00005 ABC transporter IAI05_21440 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IAI05_21440 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IAI05_21445 PF00455 DeoR C terminal sensor domain IAI05_21445 PF08220 DeoR-like helix-turn-helix domain IAI05_21470 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_21475 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_21480 PF17912 MalK OB fold domain IAI05_21480 PF00005 ABC transporter IAI05_21495 PF00817 impB/mucB/samB family IAI05_21495 PF11799 impB/mucB/samB family C-terminal domain IAI05_21500 PF01979 Amidohydrolase family IAI05_21510 PF07690 Major Facilitator Superfamily IAI05_21535 PF00005 ABC transporter IAI05_21550 PF07969 Amidohydrolase family IAI05_21560 PF01638 HxlR-like helix-turn-helix IAI05_21580 PF00355 Rieske [2Fe-2S] domain IAI05_21580 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IAI05_21585 PF00111 2Fe-2S iron-sulfur cluster binding domain IAI05_21585 PF00970 Oxidoreductase FAD-binding domain IAI05_21585 PF00175 Oxidoreductase NAD-binding domain IAI05_21595 PF03807 NADP oxidoreductase coenzyme F420-dependent IAI05_21595 PF14748 Pyrroline-5-carboxylate reductase dimerisation IAI05_21600 PF05544 Proline racemase IAI05_21605 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_21610 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_21615 PF00571 CBS domain IAI05_21615 PF00005 ABC transporter IAI05_21625 PF01266 FAD dependent oxidoreductase IAI05_21630 PF00171 Aldehyde dehydrogenase family IAI05_21635 PF00701 Dihydrodipicolinate synthetase family IAI05_21650 PF01266 FAD dependent oxidoreductase IAI05_21660 PF08669 Glycine cleavage T-protein C-terminal barrel domain IAI05_21660 PF07992 Pyridine nucleotide-disulphide oxidoreductase IAI05_21660 PF01571 Aminomethyltransferase folate-binding domain IAI05_21660 PF17806 Sarcosine oxidase A3 domain IAI05_21670 PF00464 Serine hydroxymethyltransferase IAI05_21675 PF00551 Formyl transferase IAI05_21685 PF00440 Bacterial regulatory proteins, tetR family IAI05_21690 PF00245 Alkaline phosphatase IAI05_21700 PF00005 ABC transporter IAI05_21715 PF08240 Alcohol dehydrogenase GroES-like domain IAI05_21715 PF00107 Zinc-binding dehydrogenase IAI05_21720 PF12833 Helix-turn-helix domain IAI05_21725 PF13407 Periplasmic binding protein domain IAI05_21730 PF00005 ABC transporter IAI05_21735 PF02653 Branched-chain amino acid transport system / permease component IAI05_21740 PF00106 short chain dehydrogenase IAI05_21745 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IAI05_21745 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IAI05_21755 PF00083 Sugar (and other) transporter IAI05_21755 PF08946 Osmosensory transporter coiled coil IAI05_21765 PF02563 Polysaccharide biosynthesis/export protein IAI05_21770 PF00069 Protein kinase domain IAI05_21770 PF07238 PilZ domain IAI05_21780 PF06744 Type VI secretion protein IcmF C-terminal IAI05_21780 PF06761 Intracellular multiplication and human macrophage-killing IAI05_21780 PF14331 ImcF-related N-terminal domain IAI05_21785 PF00691 OmpA family IAI05_21790 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE IAI05_21805 PF05947 Type VI secretion system, TssF IAI05_21825 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath IAI05_21830 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 IAI05_21840 PF00004 ATPase family associated with various cellular activities (AAA) IAI05_21840 PF10431 C-terminal, D2-small domain, of ClpB protein IAI05_21840 PF17871 AAA lid domain IAI05_21840 PF07724 AAA domain (Cdc48 subfamily) IAI05_21860 PF04717 Type VI secretion system, phage-baseplate injector IAI05_21895 PF13188 PAS domain IAI05_21895 PF00990 Diguanylate cyclase, GGDEF domain IAI05_21895 PF00563 EAL domain IAI05_21895 PF03707 Bacterial signalling protein N terminal repeat IAI05_21900 PF00459 Inositol monophosphatase family IAI05_21915 PF00356 Bacterial regulatory proteins, lacI family IAI05_21920 PF03471 Transporter associated domain IAI05_21920 PF03741 Integral membrane protein TerC family IAI05_21935 PF03459 TOBE domain IAI05_21935 PF00005 ABC transporter IAI05_21935 PF17912 MalK OB fold domain IAI05_21940 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_21945 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_21950 PF13416 Bacterial extracellular solute-binding protein IAI05_21955 PF01261 Xylose isomerase-like TIM barrel IAI05_21960 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_21960 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IAI05_21965 PF00356 Bacterial regulatory proteins, lacI family IAI05_21980 PF03466 LysR substrate binding domain IAI05_21980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_21990 PF13407 Periplasmic binding protein domain IAI05_21995 PF00005 ABC transporter IAI05_22000 PF02653 Branched-chain amino acid transport system / permease component IAI05_22005 PF02653 Branched-chain amino acid transport system / permease component IAI05_22010 PF00356 Bacterial regulatory proteins, lacI family IAI05_22020 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_22020 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IAI05_22040 PF00034 Cytochrome c IAI05_22055 PF00394 Multicopper oxidase IAI05_22055 PF07732 Multicopper oxidase IAI05_22075 PF00092 von Willebrand factor type A domain IAI05_22080 PF08406 CbbQ/NirQ/NorQ C-terminal IAI05_22080 PF07728 AAA domain (dynein-related subfamily) IAI05_22085 PF00115 Cytochrome C and Quinol oxidase polypeptide I IAI05_22090 PF00034 Cytochrome c IAI05_22100 PF00510 Cytochrome c oxidase subunit III IAI05_22115 PF02441 Flavoprotein IAI05_22120 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase IAI05_22125 PF04343 Protein of unknown function, DUF488 IAI05_22135 PF01136 Peptidase family U32 IAI05_22160 PF00005 ABC transporter IAI05_22170 PF06796 Periplasmic nitrate reductase protein NapE IAI05_22185 PF01568 Molydopterin dinucleotide binding domain IAI05_22185 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IAI05_22185 PF00384 Molybdopterin oxidoreductase IAI05_22190 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) IAI05_22195 PF03264 NapC/NirT cytochrome c family, N-terminal region IAI05_22200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_22200 PF03466 LysR substrate binding domain IAI05_22210 PF00664 ABC transporter transmembrane region IAI05_22210 PF00005 ABC transporter IAI05_22215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IAI05_22215 PF00529 HlyD membrane-fusion protein of T1SS IAI05_22225 PF01648 4'-phosphopantetheinyl transferase superfamily IAI05_22225 PF17837 4'-phosphopantetheinyl transferase N-terminal domain IAI05_22235 PF00857 Isochorismatase family IAI05_22235 PF00550 Phosphopantetheine attachment site IAI05_22240 PF13193 AMP-binding enzyme C-terminal domain IAI05_22240 PF00501 AMP-binding enzyme IAI05_22245 PF00425 chorismate binding enzyme IAI05_22250 PF00668 Condensation domain IAI05_22250 PF00501 AMP-binding enzyme IAI05_22250 PF00550 Phosphopantetheine attachment site IAI05_22250 PF13193 AMP-binding enzyme C-terminal domain IAI05_22255 PF00501 AMP-binding enzyme IAI05_22255 PF00668 Condensation domain IAI05_22255 PF00550 Phosphopantetheine attachment site IAI05_22255 PF00975 Thioesterase domain IAI05_22260 PF13193 AMP-binding enzyme C-terminal domain IAI05_22260 PF00550 Phosphopantetheine attachment site IAI05_22260 PF00668 Condensation domain IAI05_22260 PF00975 Thioesterase domain IAI05_22260 PF00501 AMP-binding enzyme IAI05_22270 PF04954 Siderophore-interacting protein IAI05_22270 PF08021 Siderophore-interacting FAD-binding domain IAI05_22280 PF01032 FecCD transport family IAI05_22285 PF01032 FecCD transport family IAI05_22290 PF00005 ABC transporter IAI05_22295 PF00296 Luciferase-like monooxygenase IAI05_22305 PF07715 TonB-dependent Receptor Plug Domain IAI05_22310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IAI05_22310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IAI05_22310 PF02770 Acyl-CoA dehydrogenase, middle domain IAI05_22315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_22315 PF03466 LysR substrate binding domain IAI05_22320 PF00356 Bacterial regulatory proteins, lacI family IAI05_22330 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_22340 PF08402 TOBE domain IAI05_22340 PF00005 ABC transporter IAI05_22350 PF13382 Adenine deaminase C-terminal domain IAI05_22350 PF01979 Amidohydrolase family IAI05_22355 PF03466 LysR substrate binding domain IAI05_22355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_22360 PF07690 Major Facilitator Superfamily IAI05_22365 PF07687 Peptidase dimerisation domain IAI05_22365 PF01546 Peptidase family M20/M25/M40 IAI05_22370 PF00156 Phosphoribosyl transferase domain IAI05_22375 PF01244 Membrane dipeptidase (Peptidase family M19) IAI05_22380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_22385 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_22390 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_22390 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_22395 PF00005 ABC transporter IAI05_22395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_22400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_22400 PF00005 ABC transporter IAI05_22405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_22405 PF03466 LysR substrate binding domain IAI05_22410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_22415 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_22420 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_22420 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_22425 PF01425 Amidase IAI05_22430 PF01965 DJ-1/PfpI family IAI05_22440 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_22440 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_22445 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_22450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_22455 PF07687 Peptidase dimerisation domain IAI05_22455 PF01546 Peptidase family M20/M25/M40 IAI05_22460 PF00005 ABC transporter IAI05_22460 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_22465 PF04198 Putative sugar-binding domain IAI05_22475 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_22480 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_22485 PF08402 TOBE domain IAI05_22485 PF00005 ABC transporter IAI05_22495 PF01232 Mannitol dehydrogenase Rossmann domain IAI05_22495 PF08125 Mannitol dehydrogenase C-terminal domain IAI05_22500 PF13419 Haloacid dehalogenase-like hydrolase IAI05_22505 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IAI05_22505 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IAI05_22520 PF10576 Iron-sulfur binding domain of endonuclease III IAI05_22520 PF00633 Helix-hairpin-helix motif IAI05_22520 PF00730 HhH-GPD superfamily base excision DNA repair protein IAI05_22530 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IAI05_22530 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IAI05_22535 PF13936 Helix-turn-helix domain IAI05_22535 PF04198 Putative sugar-binding domain IAI05_22540 PF00923 Transaldolase/Fructose-6-phosphate aldolase IAI05_22545 PF09339 IclR helix-turn-helix domain IAI05_22545 PF01614 Bacterial transcriptional regulator IAI05_22560 PF00950 ABC 3 transport family IAI05_22565 PF00950 ABC 3 transport family IAI05_22570 PF00005 ABC transporter IAI05_22575 PF01297 Zinc-uptake complex component A periplasmic IAI05_22590 PF00152 tRNA synthetases class II (D, K and N) IAI05_22590 PF01336 OB-fold nucleic acid binding domain IAI05_22595 PF00749 tRNA synthetases class I (E and Q), catalytic domain IAI05_22600 PF03600 Citrate transporter IAI05_22600 PF02080 TrkA-C domain IAI05_22605 PF01541 GIY-YIG catalytic domain IAI05_22610 PF03471 Transporter associated domain IAI05_22610 PF03741 Integral membrane protein TerC family IAI05_22615 PF00440 Bacterial regulatory proteins, tetR family IAI05_22620 PF13533 Biotin-lipoyl like IAI05_22625 PF07690 Major Facilitator Superfamily IAI05_22635 PF00356 Bacterial regulatory proteins, lacI family IAI05_22635 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IAI05_22640 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IAI05_22640 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IAI05_22645 PF01261 Xylose isomerase-like TIM barrel IAI05_22650 PF00232 Glycosyl hydrolase family 1 IAI05_22655 PF00881 Nitroreductase family IAI05_22660 PF00005 ABC transporter IAI05_22660 PF09383 NIL domain IAI05_22665 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_22670 PF03180 NLPA lipoprotein IAI05_22675 PF13188 PAS domain IAI05_22675 PF03707 Bacterial signalling protein N terminal repeat IAI05_22675 PF00563 EAL domain IAI05_22675 PF00990 Diguanylate cyclase, GGDEF domain IAI05_22680 PF17773 UPF0176 acylphosphatase like domain IAI05_22680 PF00581 Rhodanese-like domain IAI05_22690 PF01928 CYTH domain IAI05_22695 PF01081 KDPG and KHG aldolase IAI05_22715 PF03824 High-affinity nickel-transport protein IAI05_22735 PF13505 Outer membrane protein beta-barrel domain IAI05_22755 PF07683 Cobalamin synthesis protein cobW C-terminal domain IAI05_22755 PF02492 CobW/HypB/UreG, nucleotide-binding domain IAI05_22760 PF02633 Creatinine amidohydrolase IAI05_22765 PF01047 MarR family IAI05_22770 PF00356 Bacterial regulatory proteins, lacI family IAI05_22775 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IAI05_22775 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IAI05_22780 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IAI05_22780 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_22785 PF04962 KduI/IolB family IAI05_22790 PF01261 Xylose isomerase-like TIM barrel IAI05_22795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IAI05_22795 PF00205 Thiamine pyrophosphate enzyme, central domain IAI05_22795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IAI05_22800 PF00294 pfkB family carbohydrate kinase IAI05_22810 PF00005 ABC transporter IAI05_22815 PF12399 Branched-chain amino acid ATP-binding cassette transporter IAI05_22815 PF00005 ABC transporter IAI05_22830 PF13458 Periplasmic binding protein IAI05_22845 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_22845 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_22850 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_22855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_22860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_22860 PF00005 ABC transporter IAI05_22875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IAI05_22875 PF01261 Xylose isomerase-like TIM barrel IAI05_22885 PF01220 Dehydroquinase class II IAI05_22890 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IAI05_22890 PF08501 Shikimate dehydrogenase substrate binding domain IAI05_22895 PF00005 ABC transporter IAI05_22900 PF00497 Bacterial extracellular solute-binding proteins, family 3 IAI05_22905 PF00497 Bacterial extracellular solute-binding proteins, family 3 IAI05_22910 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_22915 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_22920 PF10397 Adenylosuccinate lyase C-terminus IAI05_22920 PF00206 Lyase IAI05_22925 PF00775 Dioxygenase IAI05_22930 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal IAI05_22930 PF00775 Dioxygenase IAI05_22935 PF02627 Carboxymuconolactone decarboxylase family IAI05_22945 PF03466 LysR substrate binding domain IAI05_22945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_22950 PF01494 FAD binding domain IAI05_22960 PF09339 IclR helix-turn-helix domain IAI05_22960 PF01614 Bacterial transcriptional regulator IAI05_22965 PF01144 Coenzyme A transferase IAI05_22970 PF01144 Coenzyme A transferase IAI05_22975 PF00108 Thiolase, N-terminal domain IAI05_22975 PF02803 Thiolase, C-terminal domain IAI05_22980 PF00356 Bacterial regulatory proteins, lacI family IAI05_22985 PF13407 Periplasmic binding protein domain IAI05_22990 PF13407 Periplasmic binding protein domain IAI05_22995 PF01261 Xylose isomerase-like TIM barrel IAI05_23000 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IAI05_23000 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IAI05_23010 PF00356 Bacterial regulatory proteins, lacI family IAI05_23015 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23020 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23025 PF00005 ABC transporter IAI05_23025 PF17912 MalK OB fold domain IAI05_23035 PF07470 Glycosyl Hydrolase Family 88 IAI05_23055 PF07690 Major Facilitator Superfamily IAI05_23060 PF00593 TonB dependent receptor IAI05_23060 PF07715 TonB-dependent Receptor Plug Domain IAI05_23065 PF04773 FecR protein IAI05_23065 PF16220 Domain of unknown function (DUF4880) IAI05_23075 PF01325 Iron dependent repressor, N-terminal DNA binding domain IAI05_23075 PF00480 ROK family IAI05_23080 PF03009 Glycerophosphoryl diester phosphodiesterase family IAI05_23085 PF00106 short chain dehydrogenase IAI05_23090 PF12833 Helix-turn-helix domain IAI05_23090 PF12852 Cupin IAI05_23100 PF11953 Domain of unknown function (DUF3470) IAI05_23100 PF00037 4Fe-4S binding domain IAI05_23105 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IAI05_23105 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IAI05_23120 PF00248 Aldo/keto reductase family IAI05_23125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_23125 PF03466 LysR substrate binding domain IAI05_23135 PF00664 ABC transporter transmembrane region IAI05_23135 PF00005 ABC transporter IAI05_23145 PF00535 Glycosyl transferase family 2 IAI05_23160 PF08241 Methyltransferase domain IAI05_23175 PF00535 Glycosyl transferase family 2 IAI05_23195 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IAI05_23200 PF08889 WbqC-like protein family IAI05_23205 PF13649 Methyltransferase domain IAI05_23210 PF08241 Methyltransferase domain IAI05_23215 PF01370 NAD dependent epimerase/dehydratase family IAI05_23225 PF00483 Nucleotidyl transferase IAI05_23230 PF04321 RmlD substrate binding domain IAI05_23235 PF16363 GDP-mannose 4,6 dehydratase IAI05_23240 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase IAI05_23255 PF01032 FecCD transport family IAI05_23260 PF01032 FecCD transport family IAI05_23265 PF00005 ABC transporter IAI05_23270 PF07715 TonB-dependent Receptor Plug Domain IAI05_23275 PF00580 UvrD/REP helicase N-terminal domain IAI05_23275 PF13361 UvrD-like helicase C-terminal domain IAI05_23285 PF00356 Bacterial regulatory proteins, lacI family IAI05_23290 PF01571 Aminomethyltransferase folate-binding domain IAI05_23290 PF17806 Sarcosine oxidase A3 domain IAI05_23290 PF07992 Pyridine nucleotide-disulphide oxidoreductase IAI05_23290 PF08669 Glycine cleavage T-protein C-terminal barrel domain IAI05_23300 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23305 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23310 PF03459 TOBE domain IAI05_23310 PF17912 MalK OB fold domain IAI05_23310 PF00005 ABC transporter IAI05_23315 PF00005 ABC transporter IAI05_23315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_23320 PF00005 ABC transporter IAI05_23320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_23325 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_23325 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23330 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23335 PF00392 Bacterial regulatory proteins, gntR family IAI05_23335 PF07729 FCD domain IAI05_23340 PF03786 D-mannonate dehydratase (UxuA) IAI05_23345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_23355 PF00990 Diguanylate cyclase, GGDEF domain IAI05_23355 PF00563 EAL domain IAI05_23355 PF03707 Bacterial signalling protein N terminal repeat IAI05_23355 PF13188 PAS domain IAI05_23370 PF02735 Ku70/Ku80 beta-barrel domain IAI05_23375 PF04679 ATP dependent DNA ligase C terminal region IAI05_23375 PF01068 ATP dependent DNA ligase domain IAI05_23375 PF13298 DNA polymerase Ligase (LigD) IAI05_23380 PF02735 Ku70/Ku80 beta-barrel domain IAI05_23385 PF01384 Phosphate transporter family IAI05_23390 PF01865 Protein of unknown function DUF47 IAI05_23400 PF00873 AcrB/AcrD/AcrF family IAI05_23405 PF00529 HlyD membrane-fusion protein of T1SS IAI05_23405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IAI05_23410 PF00072 Response regulator receiver domain IAI05_23410 PF00486 Transcriptional regulatory protein, C terminal IAI05_23415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IAI05_23415 PF00512 His Kinase A (phospho-acceptor) domain IAI05_23415 PF00672 HAMP domain IAI05_23425 PF03466 LysR substrate binding domain IAI05_23425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_23430 PF00141 Peroxidase IAI05_23440 PF12833 Helix-turn-helix domain IAI05_23445 PF00593 TonB dependent receptor IAI05_23445 PF07715 TonB-dependent Receptor Plug Domain IAI05_23455 PF01032 FecCD transport family IAI05_23460 PF01032 FecCD transport family IAI05_23465 PF00005 ABC transporter IAI05_23470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_23470 PF03466 LysR substrate binding domain IAI05_23475 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IAI05_23480 PF12411 Choline sulfatase enzyme C terminal IAI05_23480 PF00884 Sulfatase IAI05_23485 PF00294 pfkB family carbohydrate kinase IAI05_23490 PF08402 TOBE domain IAI05_23490 PF00005 ABC transporter IAI05_23495 PF14698 Argininosuccinate lyase C-terminal IAI05_23495 PF00206 Lyase IAI05_23500 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23505 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23510 PF13416 Bacterial extracellular solute-binding protein IAI05_23515 PF00480 ROK family IAI05_23540 PF02056 Family 4 glycosyl hydrolase IAI05_23540 PF11975 Family 4 glycosyl hydrolase C-terminal domain IAI05_23545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_23550 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23555 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_23555 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_23560 PF00005 ABC transporter IAI05_23565 PF02056 Family 4 glycosyl hydrolase IAI05_23565 PF11975 Family 4 glycosyl hydrolase C-terminal domain IAI05_23570 PF13533 Biotin-lipoyl like IAI05_23575 PF00005 ABC transporter IAI05_23595 PF00072 Response regulator receiver domain IAI05_23600 PF00091 Tubulin/FtsZ family, GTPase domain IAI05_23600 PF12327 FtsZ family, C-terminal domain IAI05_23605 PF00392 Bacterial regulatory proteins, gntR family IAI05_23605 PF07729 FCD domain IAI05_23610 PF00701 Dihydrodipicolinate synthetase family IAI05_23615 PF02615 Malate/L-lactate dehydrogenase IAI05_23625 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23630 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23635 PF00005 ABC transporter IAI05_23640 PF01266 FAD dependent oxidoreductase IAI05_23650 PF05544 Proline racemase IAI05_23655 PF00356 Bacterial regulatory proteins, lacI family IAI05_23665 PF00497 Bacterial extracellular solute-binding proteins, family 3 IAI05_23670 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23675 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23680 PF00005 ABC transporter IAI05_23685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IAI05_23685 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IAI05_23690 PF00990 Diguanylate cyclase, GGDEF domain IAI05_23690 PF03707 Bacterial signalling protein N terminal repeat IAI05_23690 PF00563 EAL domain IAI05_23695 PF02530 Porin subfamily IAI05_23700 PF01613 Flavin reductase like domain IAI05_23705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IAI05_23705 PF03466 LysR substrate binding domain IAI05_23715 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IAI05_23715 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IAI05_23715 PF00037 4Fe-4S binding domain IAI05_23720 PF00037 4Fe-4S binding domain IAI05_23720 PF00384 Molybdopterin oxidoreductase IAI05_23720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IAI05_23720 PF01568 Molydopterin dinucleotide binding domain IAI05_23720 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IAI05_23730 PF07690 Major Facilitator Superfamily IAI05_23735 PF00701 Dihydrodipicolinate synthetase family IAI05_23740 PF08450 SMP-30/Gluconolactonase/LRE-like region IAI05_23745 PF07729 FCD domain IAI05_23745 PF00392 Bacterial regulatory proteins, gntR family IAI05_23750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_23755 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23760 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_23760 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23765 PF00005 ABC transporter IAI05_23765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_23770 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IAI05_23770 PF13378 Enolase C-terminal domain-like IAI05_23780 PF07729 FCD domain IAI05_23780 PF00392 Bacterial regulatory proteins, gntR family IAI05_23785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IAI05_23790 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23795 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23795 PF12911 N-terminal TM domain of oligopeptide transport permease C IAI05_23805 PF00005 ABC transporter IAI05_23805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IAI05_23810 PF00459 Inositol monophosphatase family IAI05_23820 PF00005 ABC transporter IAI05_23820 PF17850 CysA C-terminal regulatory domain IAI05_23825 PF00528 Binding-protein-dependent transport system inner membrane component IAI05_23845 PF05532 CsbD-like IAI05_23855 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IAI05_23855 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IAI05_23860 PF03401 Tripartite tricarboxylate transporter family receptor IAI05_23865 PF00664 ABC transporter transmembrane region IAI05_23865 PF00005 ABC transporter IAI05_23870 PF00005 ABC transporter IAI05_23880 PF13953 PapC C-terminal domain IAI05_23880 PF00577 Outer membrane usher protein IAI05_23880 PF13954 PapC N-terminal domain IAI05_23895 PF06434 Aconitate hydratase 2 N-terminus IAI05_23895 PF11791 Aconitate B N-terminal domain IAI05_23895 PF00330 Aconitase family (aconitate hydratase) IAI05_23900 PF00132 Bacterial transferase hexapeptide (six repeats) IAI05_23910 PF00107 Zinc-binding dehydrogenase IAI05_23910 PF08240 Alcohol dehydrogenase GroES-like domain IAI05_23915 PF01590 GAF domain IAI05_23915 PF02954 Bacterial regulatory protein, Fis family IAI05_23915 PF00158 Sigma-54 interaction domain IAI05_23925 PF00356 Bacterial regulatory proteins, lacI family IAI05_23935 PF00005 ABC transporter IAI05_23940 PF02653 Branched-chain amino acid transport system / permease component IAI05_23945 PF02653 Branched-chain amino acid transport system / permease component IAI05_23950 PF01261 Xylose isomerase-like TIM barrel IAI05_23955 PF00485 Phosphoribulokinase / Uridine kinase family IAI05_23960 PF01261 Xylose isomerase-like TIM barrel IAI05_23985 PF00005 ABC transporter IAI05_23985 PF06472 ABC transporter transmembrane region 2