locus-tag	class	description
FY128_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
FY128_00010	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FY128_00015	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
FY128_00020	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
FY128_00025	COG1420	regulation of RNA biosynthetic process
FY128_00030	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
FY128_00035	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FY128_00040	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
FY128_00050	COG1137	ATPase activity
FY128_00055	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
FY128_00065	COG0616	signal peptide processing
FY128_00070	COG0776	regulation of translation
FY128_00085	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FY128_00090	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
FY128_00105	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
FY128_00110	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
FY128_00115	COG0728	peptidoglycan biosynthetic process
FY128_00125	COG0180	Tryptophanyl-tRNA synthetase
FY128_00135	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
FY128_00140	COG1214	PFAM Peptidase M22, glycoprotease
FY128_00145	COG0456	acetyltransferase
FY128_00145	COG1214	PFAM Peptidase M22, glycoprotease
FY128_00160	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
FY128_00165	COG1702	phosphate starvation-inducible protein PhoH
FY128_00170	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
FY128_00180	COG0815	Transfers the fatty acyl group on membrane lipoproteins
FY128_00185	COG1396	sequence-specific DNA binding
FY128_00190	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
FY128_00195	COG0220	tRNA (guanine-N7-)-methyltransferase activity
FY128_00200	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FY128_00210	COG0242	peptide deformylase activity
FY128_00215	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
FY128_00220	COG0101	tRNA pseudouridine synthase activity
FY128_00230	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FY128_00235	COG2171	N-acyltransferase activity
FY128_00245	COG0840	transmembrane signaling receptor activity
FY128_00255	COG0071	Belongs to the small heat shock protein (HSP20) family
FY128_00280	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
FY128_00290	COG0218	Necessary for normal cell division and for the maintenance of normal septation
FY128_00295	COG0706	membrane insertase activity
FY128_00300	COG0594	ribonuclease P activity
FY128_00305	COG0230	Belongs to the bacterial ribosomal protein bL34 family
FY128_00310	COG0840	transmembrane signaling receptor activity
FY128_00325	COG2226	methyltransferase
FY128_00330	COG3842	ATPase activity
FY128_00335	COG1175	transmembrane transport
FY128_00340	COG0395	ABC-type sugar transport system, permease component
FY128_00355	COG0427	acetyl-CoA hydrolase
FY128_00365	COG3938	Belongs to the proline racemase family
FY128_00370	COG0418	dihydroorotase activity
FY128_00375	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
FY128_00395	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
FY128_00400	COG0166	Belongs to the GPI family
FY128_00405	COG0318	PFAM AMP-dependent synthetase and ligase
FY128_00410	COG3842	ATPase activity
FY128_00415	COG1840	ABC-type Fe3 transport system, periplasmic component
FY128_00420	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
FY128_00425	COG4774	siderophore transport
FY128_00465	COG2326	polyphosphate kinase activity
FY128_00470	COG5002	protein histidine kinase activity
FY128_00475	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
FY128_00480	COG0573	inorganic phosphate transmembrane transporter activity
FY128_00490	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
FY128_00495	COG0704	Plays a role in the regulation of phosphate uptake
FY128_00500	COG0745	RESPONSE REGULATOR receiver
FY128_00510	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FY128_00515	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
FY128_00525	COG2967	ApaG domain
FY128_00540	COG0717	Belongs to the dCTP deaminase family
FY128_00550	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
FY128_00600	COG0167	dihydroorotate dehydrogenase activity
FY128_00615	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
FY128_00635	COG1959	2 iron, 2 sulfur cluster binding
FY128_00640	COG1201	RNA secondary structure unwinding
FY128_00670	COG1960	acyl-CoA dehydrogenase activity
FY128_00675	COG0183	Belongs to the thiolase family
FY128_00680	COG1250	3-hydroxyacyl-CoA dehydrogenase
FY128_00680	COG1024	Enoyl-CoA hydratase
FY128_00695	COG1320	monovalent cation:proton antiporter activity
FY128_00700	COG2212	antiporter activity
FY128_00705	COG1863	multisubunit Na H antiporter MnhE subunit
FY128_00710	COG0651	ATP synthesis coupled electron transport
FY128_00715	COG1006	Multisubunit Na H antiporter MnhC subunit
FY128_00720	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FY128_00720	COG2111	Na H antiporter
FY128_00730	COG0840	transmembrane signaling receptor activity
FY128_00740	COG0745	RESPONSE REGULATOR receiver
FY128_00745	COG2198	Histidine kinase
FY128_00745	COG0643	Histidine kinase
FY128_00750	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
FY128_00755	COG2201	protein-glutamate methylesterase activity
FY128_00760	COG0745	RESPONSE REGULATOR receiver
FY128_00765	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
FY128_00775	COG1766	The M ring may be actively involved in energy transduction
FY128_00780	COG2771	luxR family
FY128_00790	COG2972	Histidine kinase
FY128_00790	COG0840	transmembrane signaling receptor activity
FY128_00795	COG0784	Response regulator, receiver
FY128_00795	COG2198	Histidine kinase
FY128_00795	COG2205	protein histidine kinase activity
FY128_00800	COG1970	mechanosensitive ion channel activity
FY128_00805	COG0436	Aminotransferase
FY128_00820	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
FY128_00825	COG0424	maF-like protein
FY128_00830	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
FY128_00840	COG5328	Belongs to the UPF0262 family
FY128_00845	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
FY128_00855	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
FY128_00870	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FY128_00885	COG1338	Plays a role in the flagellum-specific transport system
FY128_00895	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
FY128_00905	COG1706	bacterial-type flagellum-dependent cell motility
FY128_00910	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
FY128_00915	COG4786	Flagellar basal body rod
FY128_00920	COG1677	Flagellar hook-basal body complex protein FliE
FY128_00925	COG1558	bacterial-type flagellum-dependent cell motility
FY128_00930	COG1815	bacterial-type flagellum-dependent cell motility
FY128_00940	COG1157	protein secretion by the type III secretion system
FY128_00945	COG4786	Flagellar basal body rod
FY128_00955	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
FY128_00960	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FY128_00965	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FY128_00970	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FY128_00975	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FY128_00995	COG1360	Flagellar Motor Protein
FY128_01020	COG1749	Flagellar hook protein flgE
FY128_01040	COG5443	negative regulation of bacterial-type flagellum assembly
FY128_01045	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
FY128_01055	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FY128_01095	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
FY128_01100	COG1609	Transcriptional regulator
FY128_01105	COG1653	transport
FY128_01110	COG1175	transmembrane transport
FY128_01115	COG0395	ABC-type sugar transport system, permease component
FY128_01120	COG0366	Alpha amylase catalytic
FY128_01125	COG3842	ATPase activity
FY128_01140	COG0129	dihydroxy-acid dehydratase activity
FY128_01145	COG0363	glucosamine-6-phosphate deaminase activity
FY128_01150	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
FY128_01160	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FY128_01170	COG2081	HI0933 family
FY128_01195	COG2224	Isocitrate lyase
FY128_01210	COG3842	ATPase activity
FY128_01215	COG1176	ABC-type spermidine putrescine transport system, permease component I
FY128_01220	COG1177	transmembrane transport
FY128_01230	COG2205	protein histidine kinase activity
FY128_01240	COG0248	Ppx GppA phosphatase
FY128_01245	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
FY128_01250	COG0477	Major facilitator Superfamily
FY128_01280	COG0521	Mo-molybdopterin cofactor biosynthetic process
FY128_01285	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
FY128_01295	COG0142	geranyltranstransferase activity
FY128_01320	COG0752	glycyl-tRNA synthetase alpha subunit
FY128_01325	COG1704	LemA family
FY128_01330	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
FY128_01340	COG0751	glycine-tRNA ligase activity
FY128_01355	COG1683	Conserved Protein
FY128_01360	COG0840	transmembrane signaling receptor activity
FY128_01370	COG0151	Belongs to the GarS family
FY128_01375	COG2183	response to ionizing radiation
FY128_01380	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
FY128_01405	COG0583	DNA-binding transcription factor activity
FY128_01425	COG0306	phosphate transporter
FY128_01435	COG0561	phosphatase activity
FY128_01440	COG0438	transferase activity, transferring glycosyl groups
FY128_01445	COG2186	Transcriptional regulator
FY128_01455	COG0583	DNA-binding transcription factor activity
FY128_01460	COG0277	FAD linked oxidase domain protein
FY128_01465	COG0277	FAD linked oxidase domain protein
FY128_01470	COG0247	lactate metabolic process
FY128_01480	COG1376	ErfK ybiS ycfS ynhG family protein
FY128_01485	COG2818	Glycosylase
FY128_01495	COG2855	membrane
FY128_01500	COG0583	DNA-binding transcription factor activity
FY128_01520	COG0124	histidyl-tRNA synthetase
FY128_01530	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
FY128_01535	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
FY128_01540	COG2259	Doxx family
FY128_01550	COG0459	protein refolding
FY128_01555	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
FY128_01565	COG0196	riboflavin kinase activity
FY128_01570	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
FY128_01580	COG0590	tRNA wobble adenosine to inosine editing
FY128_01585	COG1187	pseudouridine synthase activity
FY128_01590	COG0742	ribosomal rna small subunit methyltransferase
FY128_01595	COG1752	Esterase of the alpha-beta hydrolase superfamily
FY128_01605	COG0312	modulator of DNA gyrase
FY128_01620	COG1519	Transferase
FY128_01630	COG1663	tetraacyldisaccharide 4'-kinase activity
FY128_01640	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
FY128_01645	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FY128_01645	COG2205	protein histidine kinase activity
FY128_01650	COG3300	MHYT domain
FY128_01650	COG5001	Diguanylate cyclase
FY128_01655	COG3386	PFAM SMP-30 Gluconolaconase
FY128_01660	COG0800	Aldolase
FY128_01665	COG3734	2-keto-3-deoxy-galactonokinase
FY128_01670	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_01680	COG2197	response regulator
FY128_01695	COG0598	Magnesium transport protein CorA
FY128_01700	COG3158	transport of potassium into the cell
FY128_01715	COG0356	it plays a direct role in the translocation of protons across the membrane
FY128_01725	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
FY128_01730	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
FY128_01740	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
FY128_01760	COG0009	L-threonylcarbamoyladenylate synthase
FY128_01770	COG4638	Rieske (2fe-2S)
FY128_01795	COG1960	acyl-CoA dehydrogenase activity
FY128_01810	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
FY128_01815	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
FY128_01820	COG0840	transmembrane signaling receptor activity
FY128_01845	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
FY128_01850	COG1741	Belongs to the pirin family
FY128_01855	COG1722	exodeoxyribonuclease VII activity
FY128_01860	COG0123	including yeast histone deacetylase and acetoin utilization protein
FY128_01865	COG1268	BioY protein
FY128_01870	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
FY128_01875	COG1122	ATPase activity
FY128_01880	COG3214	Protein conserved in bacteria
FY128_01885	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
FY128_01885	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
FY128_01890	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
FY128_01910	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
FY128_01915	COG0484	heat shock protein binding
FY128_01925	COG0259	pyridoxamine-phosphate oxidase activity
FY128_01930	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FY128_01940	COG0312	modulator of DNA gyrase
FY128_01955	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FY128_01960	COG0109	protoheme IX farnesyltransferase activity
FY128_01965	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
FY128_01980	COG3346	SURF1 family
FY128_01985	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
FY128_01990	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
FY128_01995	COG0328	RNA-DNA hybrid ribonuclease activity
FY128_02005	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FY128_02005	COG0678	peroxiredoxin activity
FY128_02015	COG1678	Uncharacterized ACR, COG1678
FY128_02035	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FY128_02040	COG0612	Peptidase, M16
FY128_02055	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FY128_02075	COG2189	Belongs to the N(4) N(6)-methyltransferase family
FY128_02095	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
FY128_02100	COG1196	nuclear chromosome segregation
FY128_02105	COG2514	catechol 2,3-dioxygenase activity
FY128_02110	COG0574	Belongs to the PEP-utilizing enzyme family
FY128_02110	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
FY128_02125	COG1823	symporter activity
FY128_02155	COG0579	oxidoreductase
FY128_02185	COG2895	sulfate adenylyltransferase (ATP) activity
FY128_02190	COG0175	sulfate reduction
FY128_02195	COG0175	sulfate reduction
FY128_02200	COG1959	2 iron, 2 sulfur cluster binding
FY128_02205	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
FY128_02210	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
FY128_02215	COG4208	sulfate ABC transporter
FY128_02220	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
FY128_02230	COG2199	diguanylate cyclase activity
FY128_02230	COG2200	EAL domain
FY128_02230	COG2203	Gaf domain
FY128_02240	COG1309	transcriptional regulator
FY128_02245	COG1012	belongs to the aldehyde dehydrogenase family
FY128_02250	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
FY128_02295	COG0477	Major facilitator Superfamily
FY128_02305	COG1793	dna ligase
FY128_02305	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
FY128_02320	COG1376	ErfK ybiS ycfS ynhG family protein
FY128_02325	COG1376	ErfK ybiS ycfS ynhG family protein
FY128_02340	COG1846	Transcriptional regulator
FY128_02345	COG1764	response to oxidative stress
FY128_02360	COG0488	(ABC) transporter
FY128_02395	COG0583	DNA-binding transcription factor activity
FY128_02400	COG4221	oxidoreductase activity
FY128_02410	COG0433	COG0433 Predicted ATPase
FY128_02420	COG1733	regulation of RNA biosynthetic process
FY128_02425	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
FY128_02435	COG1280	lysine exporter protein (LysE YggA)
FY128_02440	COG0656	L-ascorbic acid biosynthetic process
FY128_02445	COG2378	regulation of single-species biofilm formation
FY128_02455	COG4106	trans-aconitate 2-methyltransferase activity
FY128_02460	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FY128_02465	COG0840	transmembrane signaling receptor activity
FY128_02485	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FY128_02505	COG3909	cytochrome
FY128_02510	COG2010	Cytochrome c
FY128_02540	COG0789	Transcriptional regulator
FY128_02555	COG1230	cation diffusion facilitator family transporter
FY128_02565	COG0517	IMP dehydrogenase activity
FY128_02565	COG4175	Glycine betaine
FY128_02570	COG4176	ABC-type proline glycine betaine transport system permease component
FY128_02590	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FY128_02600	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FY128_02600	COG2169	Transcriptional regulator
FY128_02610	COG2514	catechol 2,3-dioxygenase activity
FY128_02625	COG1272	protein, Hemolysin III
FY128_02635	COG1280	lysine exporter protein (LysE YggA)
FY128_02640	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FY128_02645	COG2111	Na H antiporter
FY128_02645	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FY128_02650	COG2111	Na H antiporter
FY128_02655	COG1006	Multisubunit Na H antiporter MnhC subunit
FY128_02660	COG0651	ATP synthesis coupled electron transport
FY128_02665	COG1863	multisubunit Na H antiporter MnhE subunit
FY128_02670	COG2212	antiporter activity
FY128_02675	COG1320	monovalent cation:proton antiporter activity
FY128_02680	COG4957	zinc ion binding
FY128_02695	COG2166	iron-sulfur cluster assembly
FY128_02705	COG2205	protein histidine kinase activity
FY128_02750	COG0583	DNA-binding transcription factor activity
FY128_02760	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
FY128_02765	COG2983	Belongs to the UPF0260 family
FY128_02795	COG1621	beta-fructofuranosidase activity
FY128_02800	COG2202	Pas domain
FY128_02800	COG3920	Histidine kinase
FY128_02805	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
FY128_02855	COG4695	Portal protein
FY128_02960	COG4235	cytochrome complex assembly
FY128_02965	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
FY128_02970	COG1138	Cytochrome C-type biogenesis protein
FY128_02975	COG3088	subunit of a heme lyase
FY128_02980	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FY128_02985	COG0745	RESPONSE REGULATOR receiver
FY128_02995	COG3011	Protein conserved in bacteria
FY128_03005	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
FY128_03010	COG2202	Pas domain
FY128_03010	COG2205	protein histidine kinase activity
FY128_03020	COG0308	aminopeptidase N
FY128_03040	COG0443	Heat shock 70 kDa protein
FY128_03050	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_03075	COG0604	alcohol dehydrogenase
FY128_03080	COG1733	regulation of RNA biosynthetic process
FY128_03085	COG1968	undecaprenyl-diphosphatase activity
FY128_03090	COG2239	Acts as a magnesium transporter
FY128_03095	COG2814	Major facilitator Superfamily
FY128_03115	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FY128_03140	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
FY128_03185	COG0741	lytic transglycosylase activity
FY128_03190	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FY128_03195	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
FY128_03200	COG0840	transmembrane signaling receptor activity
FY128_03210	COG1758	RNA polymerase activity
FY128_03230	COG0736	holo-[acyl-carrier-protein] synthase activity
FY128_03235	COG0681	Belongs to the peptidase S26 family
FY128_03240	COG0571	ribonuclease III activity
FY128_03245	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
FY128_03250	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FY128_03255	COG0784	Response regulator, receiver
FY128_03260	COG1381	Involved in DNA repair and RecF pathway recombination
FY128_03270	COG2226	methyltransferase
FY128_03280	COG1418	mRNA catabolic process
FY128_03290	COG0346	lactoylglutathione lyase activity
FY128_03305	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FY128_03310	COG3443	Belongs to the bacterial solute-binding protein 9 family
FY128_03315	COG0668	transmembrane transport
FY128_03325	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
FY128_03355	COG1742	UPF0060 membrane protein
FY128_03370	COG1183	phosphatidylcholine synthase activity
FY128_03375	COG0688	phosphatidylethanolamine metabolic process
FY128_03380	COG5265	(ABC) transporter
FY128_03425	COG2852	Protein conserved in bacteria
FY128_03430	COG0215	cysteine-tRNA ligase activity
FY128_03435	COG4221	oxidoreductase activity
FY128_03440	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
FY128_03445	COG1286	toxin biosynthetic process
FY128_03460	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FY128_03470	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
FY128_03480	COG0305	Participates in initiation and elongation during chromosome replication
FY128_03500	COG0359	binds to the 23S rRNA
FY128_03510	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
FY128_03515	COG0360	Binds together with S18 to 16S ribosomal RNA
FY128_03520	COG0667	Aldo Keto reductase
FY128_03525	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
FY128_03535	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FY128_03540	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FY128_03545	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
FY128_03550	COG1561	YicC-like family, N-terminal region
FY128_03555	COG0194	GDP metabolic process
FY128_03565	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
FY128_03570	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
FY128_03580	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
FY128_03595	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
FY128_03620	COG0488	(ABC) transporter
FY128_03625	COG3706	GGDEF domain
FY128_03635	COG0105	UTP biosynthetic process
FY128_03655	COG0314	molybdopterin synthase activity
FY128_03665	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
FY128_03670	COG0322	excinuclease ABC activity
FY128_03675	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_03685	COG0625	glutathione transferase activity
FY128_03700	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
FY128_03705	COG0243	molybdopterin cofactor binding
FY128_03720	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
FY128_03725	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
FY128_03730	COG0628	permease
FY128_03740	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
FY128_03745	COG0248	Ppx GppA phosphatase
FY128_03770	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
FY128_03780	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
FY128_03785	COG0477	Major facilitator Superfamily
FY128_03790	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
FY128_03795	COG4452	Inner membrane protein CreD
FY128_03800	COG0659	secondary active sulfate transmembrane transporter activity
FY128_03810	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
FY128_03815	COG3654	unkown
FY128_03820	COG2336	PFAM SpoVT AbrB
FY128_03825	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
FY128_03835	COG0113	porphobilinogen synthase activity
FY128_03855	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
FY128_03860	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
FY128_03865	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FY128_03865	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FY128_03875	COG1280	lysine exporter protein (LysE YggA)
FY128_03880	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
FY128_03885	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FY128_03890	COG2814	Major facilitator Superfamily
FY128_03895	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
FY128_03915	COG0416	fatty acid biosynthetic process
FY128_03920	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FY128_03925	COG0776	regulation of translation
FY128_03960	COG0601	transmembrane transport
FY128_03965	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_03970	COG0444	Belongs to the ABC transporter superfamily
FY128_03990	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FY128_03995	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FY128_04010	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
FY128_04015	COG0583	DNA-binding transcription factor activity
FY128_04025	COG0737	Belongs to the 5'-nucleotidase family
FY128_04050	COG2897	thiosulfate sulfurtransferase activity
FY128_04065	COG0415	Belongs to the DNA photolyase family
FY128_04075	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FY128_04105	COG3932	Exopolysaccharide synthesis, ExoD
FY128_04110	COG1238	metal cluster binding
FY128_04125	COG4139	cobalamin transport
FY128_04130	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
FY128_04140	COG1528	Iron-storage protein
FY128_04205	COG1612	heme a metabolic process
FY128_04215	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
FY128_04220	COG0010	Belongs to the arginase family
FY128_04225	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
FY128_04230	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
FY128_04245	COG1832	CoA-binding protein
FY128_04265	COG2199	diguanylate cyclase activity
FY128_04270	COG0740	serine-type endopeptidase activity
FY128_04275	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
FY128_04280	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
FY128_04290	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
FY128_04315	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FY128_04320	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FY128_04325	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FY128_04335	COG0649	NAD binding
FY128_04345	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
FY128_04350	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
FY128_04360	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
FY128_04365	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FY128_04375	COG0713	ATP synthesis coupled electron transport
FY128_04390	COG1007	ATP synthesis coupled electron transport
FY128_04395	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
FY128_04395	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
FY128_04410	COG0442	prolyl-tRNA aminoacylation
FY128_04420	COG1136	(ABC) transporter
FY128_04435	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FY128_04445	COG0784	Response regulator, receiver
FY128_04455	COG0267	Belongs to the bacterial ribosomal protein bL33 family
FY128_04460	COG0477	Major facilitator Superfamily
FY128_04475	COG0557	exoribonuclease II activity
FY128_04480	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
FY128_04490	COG0758	DNA mediated transformation
FY128_04495	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
FY128_04505	COG0540	Belongs to the ATCase OTCase family
FY128_04510	COG1960	acyl-CoA dehydrogenase activity
FY128_04515	COG0456	acetyltransferase
FY128_04535	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
FY128_04540	COG2824	Alkylphosphonate utilization operon protein PhnA
FY128_04545	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
FY128_04550	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
FY128_04555	COG0154	amidase activity
FY128_04560	COG3811	Belongs to the UPF0386 family
FY128_04575	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
FY128_04585	COG0456	acetyltransferase
FY128_04600	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
FY128_04610	COG0511	ligase activity, forming carbon-carbon bonds
FY128_04615	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
FY128_04625	COG0436	Aminotransferase
FY128_04645	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_04650	COG1530	ribonuclease E activity
FY128_04660	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
FY128_04680	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
FY128_04685	COG0384	phenazine biosynthesis protein PhzF
FY128_04700	COG0633	Ferredoxin
FY128_04715	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
FY128_04720	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
FY128_04730	COG3768	UPF0283 membrane protein
FY128_04735	COG3106	COG3106 Predicted ATPase
FY128_04765	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
FY128_04805	COG0537	adenosine 5'-monophosphoramidase activity
FY128_04830	COG0052	Belongs to the universal ribosomal protein uS2 family
FY128_04835	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
FY128_04840	COG0528	UMP kinase activity
FY128_04845	COG0233	cytoplasmic translational termination
FY128_04850	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
FY128_04860	COG0750	zinc metalloprotease
FY128_04865	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FY128_04870	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
FY128_04875	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
FY128_04880	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
FY128_04885	COG3494	Protein of unknown function (DUF1009)
FY128_04890	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
FY128_04895	COG0372	Belongs to the citrate synthase family
FY128_04910	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
FY128_04920	COG2877	3-deoxy-8-phosphooctulonate synthase activity
FY128_04925	COG0148	phosphopyruvate hydratase activity
FY128_04935	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
FY128_04940	COG0508	dehydrogenase complex catalyzes the overall conversion of
FY128_04940	COG0022	dehydrogenase e1 component
FY128_04945	COG0508	dehydrogenase complex catalyzes the overall conversion of
FY128_04955	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FY128_04965	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
FY128_04970	COG0697	spore germination
FY128_04985	COG2867	negative regulation of translational initiation
FY128_04995	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
FY128_04995	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
FY128_05005	COG3852	Histidine kinase
FY128_05010	COG2204	response regulator
FY128_05015	COG5000	phosphorelay sensor kinase activity
FY128_05020	COG2204	response regulator
FY128_05025	COG0569	domain protein
FY128_05030	COG1923	regulation of RNA biosynthetic process
FY128_05035	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
FY128_05040	COG3956	TIGRFAM MazG family protein
FY128_05050	COG1648	precorrin-2 dehydrogenase activity
FY128_05050	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
FY128_05090	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
FY128_05090	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
FY128_05095	COG0509	glycine decarboxylation via glycine cleavage system
FY128_05100	COG0404	The glycine cleavage system catalyzes the degradation of glycine
FY128_05130	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
FY128_05135	COG0564	pseudouridine synthase activity
FY128_05140	COG0546	phosphoglycolate phosphatase activity
FY128_05170	COG1671	Belongs to the UPF0178 family
FY128_05180	COG0450	alkyl hydroperoxide reductase
FY128_05185	COG0625	glutathione transferase activity
FY128_05220	COG0583	DNA-binding transcription factor activity
FY128_05225	COG2828	Protein conserved in bacteria
FY128_05240	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FY128_05245	COG4191	Histidine kinase
FY128_05245	COG0784	Response regulator, receiver
FY128_05250	COG0784	Response regulator, receiver
FY128_05255	COG3920	Histidine kinase
FY128_05255	COG2202	Pas domain
FY128_05260	COG0784	Response regulator, receiver
FY128_05260	COG4191	Histidine kinase
FY128_05290	COG0673	inositol 2-dehydrogenase activity
FY128_05300	COG1609	Transcriptional regulator
FY128_05305	COG1172	Belongs to the binding-protein-dependent transport system permease family
FY128_05310	COG1172	Belongs to the binding-protein-dependent transport system permease family
FY128_05315	COG1129	ABC transporter
FY128_05320	COG1879	ABC-type sugar transport system periplasmic component
FY128_05335	COG2226	methyltransferase
FY128_05345	COG0321	lipoyl(octanoyl) transferase activity
FY128_05345	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
FY128_05350	COG0084	hydrolase, TatD family'
FY128_05355	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FY128_05365	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
FY128_05415	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
FY128_05420	COG2095	MarC family integral membrane protein
FY128_05425	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
FY128_05425	COG0617	tRNA 3'-terminal CCA addition
FY128_05425	COG0517	IMP dehydrogenase activity
FY128_05430	COG0629	single-stranded DNA binding
FY128_05435	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
FY128_05445	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FY128_05450	COG0179	Fumarylacetoacetate (FAA) hydrolase
FY128_05465	COG1108	ABC-type Mn2 Zn2 transport systems permease components
FY128_05470	COG1121	(ABC) transporter
FY128_05490	COG0667	Aldo Keto reductase
FY128_05500	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
FY128_05575	COG2239	Acts as a magnesium transporter
FY128_05580	COG0243	molybdopterin cofactor binding
FY128_05590	COG0242	peptide deformylase activity
FY128_05610	COG0321	lipoyl(octanoyl) transferase activity
FY128_05615	COG1064	alcohol dehydrogenase
FY128_05645	COG1862	Preprotein translocase
FY128_05665	COG2124	cytochrome p450
FY128_05680	COG0596	Alpha beta hydrolase
FY128_05690	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FY128_05695	COG0626	cystathionine gamma-synthase activity
FY128_05700	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FY128_05705	COG4597	amino acid ABC transporter
FY128_05710	COG0765	amino acid transport
FY128_05715	COG1126	abc transporter atp-binding protein
FY128_05730	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
FY128_05745	COG0436	Aminotransferase
FY128_05775	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FY128_05790	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
FY128_05795	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FY128_05800	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FY128_05815	COG3243	poly(R)-hydroxyalkanoic acid synthase
FY128_05820	COG1489	DNA binding
FY128_05825	COG0024	Methionine aminopeptidase
FY128_05830	COG2003	Belongs to the UPF0758 family
FY128_05845	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
FY128_05860	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
FY128_05865	COG0546	phosphoglycolate phosphatase activity
FY128_05880	COG0114	fumarate hydratase activity
FY128_05890	COG0504	CTP synthase activity
FY128_05900	COG0149	triose-phosphate isomerase activity
FY128_05910	COG0187	DNA topoisomerase II activity
FY128_05915	COG0740	serine-type endopeptidase activity
FY128_05925	COG0640	Transcriptional regulator
FY128_05930	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FY128_05935	COG0745	RESPONSE REGULATOR receiver
FY128_05955	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
FY128_05955	COG3264	Mechanosensitive ion channel
FY128_06020	COG1127	ABC transporter
FY128_06025	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
FY128_06030	COG4948	Mandelate Racemase Muconate Lactonizing
FY128_06040	COG0280	phosphate acetyltransferase
FY128_06040	COG0281	malic enzyme
FY128_06050	COG0778	Nitroreductase
FY128_06055	COG0823	Involved in the tonB-independent uptake of proteins
FY128_06070	COG1368	sulfuric ester hydrolase activity
FY128_06095	COG0544	peptidyl-prolyl cis-trans isomerase activity
FY128_06115	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
FY128_06135	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
FY128_06160	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
FY128_06160	COG0512	Glutamine amidotransferase of anthranilate synthase
FY128_06165	COG0343	queuine tRNA-ribosyltransferase activity
FY128_06170	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
FY128_06185	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
FY128_06200	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
FY128_06205	COG0134	indole-3-glycerol-phosphate synthase activity
FY128_06210	COG0315	cyclic pyranopterin monophosphate synthase activity
FY128_06215	COG0303	'Molybdopterin
FY128_06220	COG3706	GGDEF domain
FY128_06230	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FY128_06230	COG0475	glutathione-regulated potassium exporter activity
FY128_06240	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
FY128_06245	COG0697	spore germination
FY128_06250	COG2814	Major facilitator Superfamily
FY128_06255	COG0746	molybdenum cofactor guanylyltransferase activity
FY128_06260	COG1763	Mo-molybdopterin cofactor biosynthetic process
FY128_06265	COG0739	heme binding
FY128_06270	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
FY128_06275	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
FY128_06280	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
FY128_06285	COG0805	protein transport
FY128_06290	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FY128_06295	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FY128_06300	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
FY128_06305	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
FY128_06310	COG1472	Belongs to the glycosyl hydrolase 3 family
FY128_06320	COG0018	arginyl-trna synthetase
FY128_06325	COG0232	Belongs to the dGTPase family. Type 2 subfamily
FY128_06330	COG0316	Belongs to the HesB IscA family
FY128_06355	COG0525	valine-tRNA ligase activity
FY128_06365	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
FY128_06390	COG0655	NAD(P)H dehydrogenase (quinone) activity
FY128_06395	COG1058	Belongs to the CinA family
FY128_06395	COG1546	Belongs to the CinA family
FY128_06400	COG0589	response to stress
FY128_06405	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
FY128_06415	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FY128_06425	COG1914	H( )-stimulated, divalent metal cation uptake system
FY128_06435	COG1132	(ABC) transporter
FY128_06440	COG0628	permease
FY128_06475	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
FY128_06485	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
FY128_06495	COG0302	gtp cyclohydrolase
FY128_06500	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
FY128_06505	COG1752	Esterase of the alpha-beta hydrolase superfamily
FY128_06510	COG0516	GMP reductase activity
FY128_06510	COG0517	IMP dehydrogenase activity
FY128_06540	COG1760	l-serine dehydratase
FY128_06575	COG0583	DNA-binding transcription factor activity
FY128_06590	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
FY128_06590	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
FY128_06595	COG0347	Belongs to the P(II) protein family
FY128_06600	COG0174	glutamine synthetase
FY128_06630	COG0697	spore germination
FY128_06640	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
FY128_06650	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
FY128_06680	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
FY128_06685	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
FY128_06690	COG2186	Transcriptional regulator
FY128_06700	COG1079	Belongs to the binding-protein-dependent transport system permease family
FY128_06705	COG4603	Belongs to the binding-protein-dependent transport system permease family
FY128_06710	COG3845	ABC transporter
FY128_06715	COG1183	phosphatidylcholine synthase activity
FY128_06720	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FY128_06725	COG0679	Auxin Efflux Carrier
FY128_06730	COG0785	Cytochrome C biogenesis protein
FY128_06765	COG0346	lactoylglutathione lyase activity
FY128_06770	COG1278	Cold shock
FY128_06820	COG0577	efflux transmembrane transporter activity
FY128_06820	COG1136	(ABC) transporter
FY128_06825	COG0577	efflux transmembrane transporter activity
FY128_06825	COG1136	(ABC) transporter
FY128_06840	COG2151	metal-sulfur cluster biosynthetic enzyme
FY128_06845	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FY128_06850	COG0719	Fe-S assembly protein
FY128_06855	COG0396	ATPase activity
FY128_06860	COG0719	Fe-S assembly protein
FY128_06865	COG1104	cysteine desulfurase activity
FY128_06870	COG2945	thiolester hydrolase activity
FY128_06875	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
FY128_06880	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
FY128_06890	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
FY128_06895	COG2833	Protein of unknown function (DUF455)
FY128_06900	COG0739	heme binding
FY128_06905	COG0513	Belongs to the DEAD box helicase family
FY128_06930	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
FY128_06940	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
FY128_06945	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
FY128_06950	COG0047	phosphoribosylformylglycinamidine synthase activity
FY128_06965	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FY128_06975	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
FY128_07000	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
FY128_07005	COG2814	Major facilitator Superfamily
FY128_07010	COG0483	inositol monophosphate 1-phosphatase activity
FY128_07015	COG0483	inositol monophosphate 1-phosphatase activity
FY128_07020	COG0037	tRNA processing
FY128_07025	COG2066	Belongs to the glutaminase family
FY128_07030	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
FY128_07035	COG0861	Integral membrane protein TerC family
FY128_07055	COG1280	lysine exporter protein (LysE YggA)
FY128_07065	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
FY128_07070	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
FY128_07080	COG0538	isocitrate dehydrogenase activity
FY128_07095	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
FY128_07100	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
FY128_07105	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FY128_07110	COG2313	pseudouridylate synthase activity
FY128_07120	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FY128_07125	COG4215	(ABC) transporter
FY128_07135	COG5425	PFAM Usg family protein
FY128_07145	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FY128_07150	COG1522	sequence-specific DNA binding
FY128_07155	COG1573	uracil-dna glycosylase
FY128_07165	COG2202	Pas domain
FY128_07165	COG2205	protein histidine kinase activity
FY128_07175	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
FY128_07180	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
FY128_07195	COG0842	Transport permease protein
FY128_07200	COG1131	(ABC) transporter
FY128_07205	COG0730	response to heat
FY128_07215	COG0840	transmembrane signaling receptor activity
FY128_07215	COG0840	transmembrane signaling receptor activity
FY128_07225	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
FY128_07230	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FY128_07245	COG0129	dihydroxy-acid dehydratase activity
FY128_07250	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
FY128_07255	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
FY128_07265	COG3739	integral membrane protein
FY128_07275	COG0203	ribosomal protein L17
FY128_07280	COG0202	RNA polymerase activity
FY128_07285	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
FY128_07290	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
FY128_07295	COG0563	adenylate kinase activity
FY128_07300	COG0201	protein transport
FY128_07305	COG0200	Binds to the 23S rRNA
FY128_07310	COG1841	ribosomal large subunit assembly
FY128_07315	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
FY128_07320	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
FY128_07325	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
FY128_07330	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
FY128_07335	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
FY128_07340	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
FY128_07345	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
FY128_07350	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
FY128_07355	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
FY128_07360	COG0255	Belongs to the universal ribosomal protein uL29 family
FY128_07365	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
FY128_07370	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
FY128_07375	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
FY128_07380	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
FY128_07385	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
FY128_07390	COG0089	rRNA binding
FY128_07395	COG0088	Forms part of the polypeptide exit tunnel
FY128_07400	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
FY128_07405	COG0051	transcription antitermination factor activity, RNA binding
FY128_07410	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
FY128_07415	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
FY128_07420	COG0049	tRNA binding
FY128_07425	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
FY128_07440	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
FY128_07445	COG0085	RNA polymerase activity
FY128_07455	COG0222	ribosome binding
FY128_07460	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
FY128_07465	COG0081	regulation of translation
FY128_07470	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
FY128_07480	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FY128_07495	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
FY128_07500	COG0861	Integral membrane protein TerC family
FY128_07530	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FY128_07535	COG1607	acyl-coa hydrolase
FY128_07560	COG2910	NAD(P)H-binding
FY128_07565	COG1733	regulation of RNA biosynthetic process
FY128_07575	COG0556	nucleotide-excision repair
FY128_07580	COG2382	esterase
FY128_07600	COG0484	heat shock protein binding
FY128_07625	COG3842	ATPase activity
FY128_07630	COG4149	molybdate abc transporter
FY128_07635	COG1840	ABC-type Fe3 transport system, periplasmic component
FY128_07640	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FY128_07655	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
FY128_07665	COG2207	Transcriptional regulator
FY128_07670	COG1064	alcohol dehydrogenase
FY128_07675	COG1252	NADH dehydrogenase
FY128_07680	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
FY128_07685	COG2197	response regulator
FY128_07690	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
FY128_07695	COG1090	epimerase
FY128_07735	COG0656	L-ascorbic acid biosynthetic process
FY128_07750	COG0440	acetolactate synthase activity
FY128_07755	COG0028	Belongs to the TPP enzyme family
FY128_07765	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
FY128_07770	COG3830	Belongs to the UPF0237 family
FY128_07770	COG0560	Phosphoserine phosphatase
FY128_07790	COG0330	HflC and HflK could
FY128_07795	COG0330	HflC and HflK could
FY128_07805	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
FY128_07845	COG0277	FAD linked oxidase domain protein
FY128_07850	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FY128_07905	COG1335	isochorismatase
FY128_07925	COG0006	proline dipeptidase activity
FY128_07930	COG2264	protein methyltransferase activity
FY128_07935	COG1999	signal sequence binding
FY128_07945	COG0835	chemotaxis
FY128_07955	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FY128_07960	COG0583	DNA-binding transcription factor activity
FY128_07970	COG1247	-acetyltransferase
FY128_07980	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
FY128_07985	COG1280	lysine exporter protein (LysE YggA)
FY128_07990	COG0497	DNA recombination
FY128_07995	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FY128_08005	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
FY128_08010	COG0849	cell division
FY128_08015	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
FY128_08020	COG1181	Belongs to the D-alanine--D-alanine ligase family
FY128_08025	COG0477	Major facilitator Superfamily
FY128_08035	COG0812	UDP-N-acetylmuramate dehydrogenase activity
FY128_08040	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
FY128_08045	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
FY128_08055	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
FY128_08060	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FY128_08070	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FY128_08085	COG0275	rRNA processing
FY128_08090	COG2001	Belongs to the MraZ family
FY128_08115	COG3023	N-Acetylmuramoyl-L-alanine amidase
FY128_08145	COG4106	trans-aconitate 2-methyltransferase activity
FY128_08165	COG2226	methyltransferase
FY128_08175	COG2267	carboxylic ester hydrolase activity
FY128_08180	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FY128_08195	COG0251	oxidation-reduction process
FY128_08210	COG1376	ErfK ybiS ycfS ynhG family protein
FY128_08215	COG2814	Major facilitator Superfamily
FY128_08240	COG1012	belongs to the aldehyde dehydrogenase family
FY128_08245	COG0174	glutamine synthetase
FY128_08250	COG0531	amino acid
FY128_08260	COG1737	Transcriptional regulator
FY128_08280	COG3842	ATPase activity
FY128_08340	COG2968	Membrane
FY128_08350	COG0432	Pfam Uncharacterised protein family UPF0047
FY128_08365	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FY128_08370	COG0358	DNA primase activity
FY128_08380	COG0505	Belongs to the CarA family
FY128_08385	COG0534	Mate efflux family protein
FY128_08400	COG2321	neutral zinc metallopeptidase
FY128_08415	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
FY128_08420	COG3706	GGDEF domain
FY128_08425	COG1573	uracil-dna glycosylase
FY128_08435	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FY128_08445	COG1522	sequence-specific DNA binding
FY128_08450	COG0492	ferredoxin-NADP+ reductase activity
FY128_08455	COG0583	DNA-binding transcription factor activity
FY128_08465	COG1902	pentaerythritol trinitrate reductase activity
FY128_08490	COG0387	Pfam Sodium calcium exchanger
FY128_08495	COG0436	Aminotransferase
FY128_08500	COG2200	EAL domain
FY128_08500	COG2199	diguanylate cyclase activity
FY128_08515	COG1278	Cold shock
FY128_08520	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FY128_08530	COG1846	Transcriptional regulator
FY128_08535	COG0745	RESPONSE REGULATOR receiver
FY128_08540	COG2205	protein histidine kinase activity
FY128_08545	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FY128_08565	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
FY128_08575	COG1496	oxidoreductase activity
FY128_08590	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
FY128_08600	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
FY128_08615	COG0840	transmembrane signaling receptor activity
FY128_08620	COG1012	belongs to the aldehyde dehydrogenase family
FY128_08630	COG3300	MHYT domain
FY128_08630	COG5001	Diguanylate cyclase
FY128_08635	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
FY128_08640	COG5001	Diguanylate cyclase
FY128_08650	COG0193	aminoacyl-tRNA hydrolase activity
FY128_08660	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
FY128_08680	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
FY128_08685	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
FY128_08695	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
FY128_08695	COG2857	Cytochrome c1
FY128_08715	COG1132	(ABC) transporter
FY128_08720	COG1132	(ABC) transporter
FY128_08725	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
FY128_08740	COG0408	coproporphyrinogen oxidase activity
FY128_08755	COG0617	tRNA 3'-terminal CCA addition
FY128_08770	COG0714	Associated with various cellular activities
FY128_08790	COG0454	-acetyltransferase
FY128_08795	COG0477	Major facilitator Superfamily
FY128_08805	COG0435	Glutathione S-transferase
FY128_08820	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FY128_08825	COG3135	benzoate transporter
FY128_08830	COG4944	Protein of unknown function (DUF1109)
FY128_08845	COG0740	serine-type endopeptidase activity
FY128_08860	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
FY128_08865	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
FY128_08895	COG4175	Glycine betaine
FY128_08910	COG1435	thymidine kinase activity
FY128_08930	COG2862	Uncharacterized protein family, UPF0114
FY128_08950	COG0512	Glutamine amidotransferase of anthranilate synthase
FY128_08950	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
FY128_08960	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
FY128_08970	COG0366	Alpha amylase catalytic
FY128_08975	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FY128_08990	COG1160	GTP binding
FY128_09010	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
FY128_09020	COG0024	Methionine aminopeptidase
FY128_09030	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_09040	COG1529	Aldehyde oxidase and xanthine dehydrogenase
FY128_09050	COG0583	DNA-binding transcription factor activity
FY128_09065	COG0402	S-adenosylhomocysteine deaminase activity
FY128_09080	COG1304	FMN binding
FY128_09090	COG1309	transcriptional regulator
FY128_09095	COG1686	Belongs to the peptidase S11 family
FY128_09105	COG2351	hydroxyisourate hydrolase activity
FY128_09110	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
FY128_09135	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
FY128_09145	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FY128_09145	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
FY128_09150	COG0784	Response regulator, receiver
FY128_09150	COG2205	protein histidine kinase activity
FY128_09150	COG5002	protein histidine kinase activity
FY128_09155	COG0513	Belongs to the DEAD box helicase family
FY128_09165	COG2259	Doxx family
FY128_09170	COG1376	ErfK ybiS ycfS ynhG family protein
FY128_09180	COG2308	Evidence 4 Homologs of previously reported genes of
FY128_09190	COG1305	Transglutaminase-like
FY128_09220	COG4214	carbohydrate transport
FY128_09225	COG1129	ABC transporter
FY128_09230	COG4213	ABC transporter substrate-binding protein
FY128_09260	COG2814	Major facilitator Superfamily
FY128_09285	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FY128_09315	COG1215	transferase activity, transferring glycosyl groups
FY128_09330	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
FY128_09345	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
FY128_09350	COG2346	COG2346, Truncated hemoglobins
FY128_09370	COG1309	transcriptional regulator
FY128_09385	COG0494	nUDIX hydrolase
FY128_09395	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FY128_09400	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FY128_09430	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
FY128_09435	COG0830	nickel cation binding
FY128_09440	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
FY128_09455	COG0804	urea catabolic process
FY128_09460	COG1442	glycosyl transferase family 8
FY128_09465	COG3755	Protein conserved in bacteria
FY128_09475	COG0832	Belongs to the urease beta subunit family
FY128_09480	COG3813	Protein conserved in bacteria
FY128_09485	COG0831	urea catabolic process
FY128_09490	COG0829	nickel cation binding
FY128_09515	COG0559	Belongs to the binding-protein-dependent transport system permease family
FY128_09530	COG0174	glutamine synthetase
FY128_09535	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_09540	COG0784	Response regulator, receiver
FY128_09540	COG2198	Histidine kinase
FY128_09540	COG5002	protein histidine kinase activity
FY128_09585	COG1218	3'(2'),5'-bisphosphate nucleotidase
FY128_09660	COG0564	pseudouridine synthase activity
FY128_09675	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FY128_09685	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
FY128_09710	COG0346	lactoylglutathione lyase activity
FY128_09720	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
FY128_09730	COG2832	Protein of unknown function (DUF454)
FY128_09735	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
FY128_09740	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FY128_09745	COG4558	Periplasmic binding protein
FY128_09755	COG3721	Heme iron utilization protein
FY128_09775	COG2205	protein histidine kinase activity
FY128_09820	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FY128_09825	COG4605	iron ion homeostasis
FY128_09830	COG4604	ABC transporter, ATP-binding protein
FY128_09835	COG0783	Belongs to the Dps family
FY128_09850	COG2972	Histidine kinase
FY128_09850	COG0840	transmembrane signaling receptor activity
FY128_09855	COG0656	L-ascorbic acid biosynthetic process
FY128_09860	COG2814	Major facilitator Superfamily
FY128_09870	COG0583	DNA-binding transcription factor activity
FY128_09875	COG0657	acetylesterase activity
FY128_09880	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FY128_09900	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FY128_09905	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
FY128_09910	COG0288	reversible hydration of carbon dioxide
FY128_09920	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FY128_09940	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
FY128_09945	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FY128_09950	COG0778	Nitroreductase
FY128_09955	COG2267	carboxylic ester hydrolase activity
FY128_09960	COG0251	oxidation-reduction process
FY128_09965	COG1335	isochorismatase
FY128_09970	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FY128_09980	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FY128_09995	COG1175	transmembrane transport
FY128_10000	COG0395	ABC-type sugar transport system, permease component
FY128_10005	COG3842	ATPase activity
FY128_10010	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FY128_10020	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FY128_10035	COG4608	Belongs to the ABC transporter superfamily
FY128_10040	COG0444	Belongs to the ABC transporter superfamily
FY128_10045	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_10050	COG0601	transmembrane transport
FY128_10070	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
FY128_10070	COG0392	lysyltransferase activity
FY128_10110	COG2159	amidohydrolase
FY128_10140	COG0745	RESPONSE REGULATOR receiver
FY128_10150	COG1902	pentaerythritol trinitrate reductase activity
FY128_10150	COG0446	pyridine nucleotide-disulphide oxidoreductase
FY128_10155	COG3842	ATPase activity
FY128_10165	COG1840	ABC-type Fe3 transport system, periplasmic component
FY128_10170	COG1840	ABC-type Fe3 transport system, periplasmic component
FY128_10175	COG0745	RESPONSE REGULATOR receiver
FY128_10190	COG1192	Involved in chromosome partitioning
FY128_10195	COG2201	protein-glutamate methylesterase activity
FY128_10200	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
FY128_10205	COG0835	chemotaxis
FY128_10210	COG0840	transmembrane signaling receptor activity
FY128_10215	COG0835	chemotaxis
FY128_10220	COG0643	Histidine kinase
FY128_10220	COG2198	Histidine kinase
FY128_10280	COG0277	FAD linked oxidase domain protein
FY128_10290	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FY128_10290	COG1017	nitric oxide dioxygenase activity
FY128_10325	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
FY128_10335	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FY128_10340	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FY128_10350	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
FY128_10355	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
FY128_10375	COG0583	DNA-binding transcription factor activity
FY128_10380	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FY128_10385	COG0725	ABC transporter, periplasmic molybdate-binding protein
FY128_10390	COG4149	molybdate abc transporter
FY128_10395	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
FY128_10410	COG2022	thiamine diphosphate biosynthetic process
FY128_10425	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
FY128_10430	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FY128_10440	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
FY128_10460	COG1132	(ABC) transporter
FY128_10465	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FY128_10490	COG0438	transferase activity, transferring glycosyl groups
FY128_10510	COG4166	transmembrane transport
FY128_10515	COG0601	transmembrane transport
FY128_10520	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_10530	COG0438	transferase activity, transferring glycosyl groups
FY128_10535	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
FY128_10540	COG3142	Participates in the control of copper homeostasis
FY128_10545	COG2814	Major facilitator Superfamily
FY128_10560	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_10565	COG1737	Transcriptional regulator
FY128_10575	COG3842	ATPase activity
FY128_10585	COG0395	ABC-type sugar transport system, permease component
FY128_10600	COG2188	Transcriptional regulator
FY128_10605	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
FY128_10610	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
FY128_10615	COG1940	carbohydrate kinase activity
FY128_10625	COG0671	phosphoesterase, PA-phosphatase related
FY128_10630	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
FY128_10635	COG0156	8-amino-7-oxononanoate synthase activity
FY128_10645	COG0729	surface antigen
FY128_10655	COG0835	chemotaxis
FY128_10665	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
FY128_10670	COG0355	proton-transporting ATP synthase activity, rotational mechanism
FY128_10675	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
FY128_10680	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
FY128_10685	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
FY128_10690	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
FY128_10705	COG4974	Belongs to the 'phage' integrase family
FY128_10730	COG1280	lysine exporter protein (LysE YggA)
FY128_10740	COG0508	dehydrogenase complex catalyzes the overall conversion of
FY128_10745	COG0567	Dehydrogenase, E1 component
FY128_10750	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
FY128_10755	COG0045	succinate-CoA ligase (ADP-forming) activity
FY128_10760	COG0039	L-malate dehydrogenase activity
FY128_10765	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
FY128_10800	COG2264	protein methyltransferase activity
FY128_10815	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
FY128_10820	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
FY128_10825	COG0181	hydroxymethylbilane synthase activity
FY128_10850	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
FY128_10865	COG1872	DUF167
FY128_10870	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
FY128_10880	COG1217	gtp-binding protein TYPA
FY128_10885	COG0339	signal peptide processing
FY128_10895	COG1846	Transcriptional regulator
FY128_10905	COG0137	argininosuccinate synthase activity
FY128_10915	COG1280	lysine exporter protein (LysE YggA)
FY128_10920	COG1122	ATPase activity
FY128_10925	COG4120	Belongs to the binding-protein-dependent transport system permease family
FY128_10935	COG0820	rRNA (adenine-C2-)-methyltransferase activity
FY128_10950	COG2154	pterin-4-alpha-carbinolamine dehydratase
FY128_10955	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
FY128_10960	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
FY128_10970	COG4181	ATPase activity
FY128_10980	COG0670	Belongs to the BI1 family
FY128_10995	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FY128_11000	COG4133	protoheme IX ABC transporter activity
FY128_11005	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FY128_11010	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FY128_11035	COG2917	probably involved in intracellular septation
FY128_11040	COG0552	protein localization to endoplasmic reticulum
FY128_11045	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
FY128_11050	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
FY128_11060	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
FY128_11065	COG0287	Prephenate dehydrogenase
FY128_11065	COG1605	Chorismate mutase
FY128_11070	COG0228	four-way junction DNA binding
FY128_11075	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
FY128_11080	COG0336	Belongs to the RNA methyltransferase TrmD family
FY128_11090	COG0335	large ribosomal subunit rRNA binding
FY128_11095	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
FY128_11100	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FY128_11115	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
FY128_11125	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
FY128_11145	COG0488	(ABC) transporter
FY128_11155	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
FY128_11165	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FY128_11170	COG0142	geranyltranstransferase activity
FY128_11175	COG2885	chlorophyll binding
FY128_11180	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
FY128_11185	COG2223	nitrite transmembrane transporter activity
FY128_11190	COG1349	DNA-binding transcription factor activity
FY128_11195	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
FY128_11200	COG2197	response regulator
FY128_11205	COG1132	(ABC) transporter
FY128_11210	COG3459	Glycosyltransferase 36 associated
FY128_11215	COG1473	amidohydrolase
FY128_11220	COG0579	oxidoreductase
FY128_11230	COG0129	dihydroxy-acid dehydratase activity
FY128_11235	COG2084	Dehydrogenase
FY128_11240	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FY128_11245	COG0277	FAD linked oxidase domain protein
FY128_11250	COG2186	Transcriptional regulator
FY128_11260	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FY128_11265	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FY128_11270	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FY128_11275	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FY128_11290	COG0495	leucyl-tRNA aminoacylation
FY128_11305	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
FY128_11310	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
FY128_11320	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FY128_11325	COG1946	Acyl-CoA thioesterase
FY128_11330	COG0347	Belongs to the P(II) protein family
FY128_11335	COG0004	ammonium transporteR
FY128_11340	COG1674	ftsk spoiiie
FY128_11345	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
FY128_11360	COG0745	RESPONSE REGULATOR receiver
FY128_11370	COG1329	Transcriptional regulator
FY128_11375	COG2902	Dehydrogenase
FY128_11380	COG2270	Major facilitator Superfamily
FY128_11395	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_11410	COG0494	nUDIX hydrolase
FY128_11420	COG0793	Belongs to the peptidase S41A family
FY128_11430	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
FY128_11435	COG0799	negative regulation of ribosome biogenesis
FY128_11440	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
FY128_11445	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
FY128_11450	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
FY128_11455	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
FY128_11470	COG0211	Belongs to the bacterial ribosomal protein bL27 family
FY128_11475	COG0261	This protein binds to 23S rRNA in the presence of protein L20
FY128_11500	COG0066	3-isopropylmalate dehydratase activity
FY128_11505	COG0473	3-isopropylmalate dehydrogenase activity
FY128_11510	COG1858	cytochrome C peroxidase
FY128_11515	COG1797	cobyrinic acid a,c-diamide synthase activity
FY128_11520	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
FY128_11520	COG1648	precorrin-2 dehydrogenase activity
FY128_11525	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
FY128_11590	COG1492	cobalamin metabolic process
FY128_11605	COG4948	Mandelate Racemase Muconate Lactonizing
FY128_11610	COG3254	rhamnose metabolic process
FY128_11615	COG0246	Mannitol dehydrogenase
FY128_11620	COG1063	alcohol dehydrogenase
FY128_11640	COG4214	carbohydrate transport
FY128_11645	COG1129	ABC transporter
FY128_11650	COG2186	Transcriptional regulator
FY128_11655	COG2721	sulfolactate sulfo-lyase activity
FY128_11660	COG0138	bifunctional purine biosynthesis protein purh
FY128_11670	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FY128_11670	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FY128_11675	COG0501	Belongs to the peptidase M48B family
FY128_11695	COG0357	Ribosomal RNA small subunit methyltransferase G
FY128_11700	COG0445	tRNA wobble uridine modification
FY128_11705	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
FY128_11710	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
FY128_11715	COG1981	membrane
FY128_11720	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
FY128_11725	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
FY128_11730	COG0424	maF-like protein
FY128_11735	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
FY128_11740	COG0237	dephospho-CoA kinase activity
FY128_11750	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
FY128_11755	COG3030	protein affecting phage T7 exclusion by the F plasmid
FY128_11765	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
FY128_11790	COG0179	Fumarylacetoacetate (FAA) hydrolase
FY128_11805	COG0135	phosphoribosylanthranilate isomerase activity
FY128_11810	COG0133	tryptophan synthase activity
FY128_11815	COG0159	tryptophan synthase activity
FY128_11820	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
FY128_11825	COG0285	dihydrofolate synthase activity
FY128_11835	COG1074	ATP-dependent DNA helicase activity
FY128_11845	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
FY128_11850	COG0802	atpase or kinase
FY128_11855	COG2205	protein histidine kinase activity
FY128_11860	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
FY128_11865	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FY128_11870	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
FY128_11870	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FY128_11875	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
FY128_11880	COG0642	Histidine kinase
FY128_11885	COG0745	RESPONSE REGULATOR receiver
FY128_11890	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
FY128_11900	COG1652	LysM domain
FY128_11905	COG1072	(Pantothenic acid kinase))
FY128_11910	COG0140	phosphoribosyl-ATP diphosphatase activity
FY128_11915	COG0107	imidazoleglycerol-phosphate synthase activity
FY128_11920	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
FY128_11925	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
FY128_11935	COG0131	Imidazoleglycerol-phosphate dehydratase
FY128_11940	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
FY128_11945	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
FY128_11955	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
FY128_11970	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
FY128_11980	COG1643	Atp-dependent helicase
FY128_12015	COG0514	ATP-dependent DNA helicase (RecQ)
FY128_12040	COG1072	(Pantothenic acid kinase))
FY128_12050	COG1780	Probably involved in ribonucleotide reductase function
FY128_12070	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
FY128_12095	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FY128_12110	COG1185	polyribonucleotide nucleotidyltransferase activity
FY128_12115	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
FY128_12120	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
FY128_12125	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
FY128_12130	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
FY128_12130	COG3064	Membrane
FY128_12145	COG0779	Required for maturation of 30S ribosomal subunits
FY128_12150	COG2814	Major facilitator Superfamily
FY128_12155	COG2951	lytic endotransglycosylase activity
FY128_12160	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
FY128_12170	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
FY128_12175	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FY128_12190	COG2816	NAD+ diphosphatase activity
FY128_12195	COG0077	Prephenate dehydratase
FY128_12195	COG1605	Chorismate mutase
FY128_12200	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
FY128_12205	COG3474	cytochrome
FY128_12215	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
FY128_12220	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
FY128_12225	COG1278	Cold shock
FY128_12230	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FY128_12240	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FY128_12240	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FY128_12250	COG0333	Belongs to the bacterial ribosomal protein bL32 family
FY128_12280	COG2900	Belongs to the SlyX family
FY128_12290	COG0484	heat shock protein binding
FY128_12295	COG0443	Heat shock 70 kDa protein
FY128_12310	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FY128_12315	COG1744	ABC transporter substrate-binding protein PnrA-like
FY128_12320	COG3845	ABC transporter
FY128_12325	COG1079	Belongs to the binding-protein-dependent transport system permease family
FY128_12330	COG1079	Belongs to the binding-protein-dependent transport system permease family
FY128_12335	COG0295	cytidine deaminase activity
FY128_12345	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
FY128_12350	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
FY128_12360	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
FY128_12365	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
FY128_12370	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
FY128_12385	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
FY128_12390	COG1845	cytochrome c oxidase, subunit III
FY128_12395	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FY128_12400	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
FY128_12405	COG0477	Major facilitator Superfamily
FY128_12410	COG0070	glutamate synthase
FY128_12410	COG0069	glutamate synthase activity
FY128_12410	COG0067	glutamate synthase
FY128_12415	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
FY128_12430	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
FY128_12440	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
FY128_12475	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FY128_12495	COG0848	biopolymer transport protein
FY128_12505	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FY128_12520	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
FY128_12525	COG3454	Phosphonate metabolism
FY128_12530	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
FY128_12535	COG3639	organic phosphonate transmembrane transporter activity
FY128_12540	COG3639	organic phosphonate transmembrane transporter activity
FY128_12550	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
FY128_12560	COG4778	phosphonate C-P lyase system protein PhnL
FY128_12565	COG4107	phosphonate C-P lyase system protein PhnK
FY128_12570	COG3627	carbon phosphorus lyase activity
FY128_12575	COG3626	phosphonate metabolism
FY128_12580	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
FY128_12585	COG3624	Phosphonate C-P lyase system protein PhnG
FY128_12590	COG2188	Transcriptional regulator
FY128_12595	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
FY128_12600	COG0837	glucose binding
FY128_12605	COG1803	Methylglyoxal synthase
FY128_12610	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
FY128_12615	COG4166	transmembrane transport
FY128_12620	COG4174	ABC transporter (Permease)
FY128_12625	COG4239	(ABC) transporter, permease
FY128_12630	COG4172	Belongs to the ABC transporter superfamily
FY128_12635	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FY128_12640	COG0174	glutamine synthetase
FY128_12645	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FY128_12650	COG3265	gluconokinase activity
FY128_12655	COG1174	glycine betaine transport
FY128_12660	COG1125	glycine betaine transport
FY128_12665	COG1174	glycine betaine transport
FY128_12670	COG1732	Glycine betaine
FY128_12680	COG1959	2 iron, 2 sulfur cluster binding
FY128_12685	COG1840	ABC-type Fe3 transport system, periplasmic component
FY128_12705	COG0697	spore germination
FY128_12720	COG0791	NLP P60 protein
FY128_12730	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
FY128_12735	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
FY128_12770	COG4964	Belongs to the GSP D family
FY128_12810	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
FY128_12815	COG3422	double-strand break repair
FY128_12820	COG3757	hydrolase, family 25
FY128_12825	COG0697	spore germination
FY128_12830	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FY128_12860	COG0481	GTPase activity
FY128_12865	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FY128_12895	COG2207	Transcriptional regulator
FY128_12895	COG3708	Transcriptional regulator
FY128_12900	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FY128_12925	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
FY128_12930	COG0291	Belongs to the bacterial ribosomal protein bL35 family
FY128_12935	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
FY128_12945	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
FY128_12950	COG0072	phenylalanine-tRNA ligase activity
FY128_12950	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FY128_12955	COG0667	Aldo Keto reductase
FY128_12975	COG4977	sequence-specific DNA binding
FY128_13000	COG1570	exodeoxyribonuclease VII activity
FY128_13005	COG4948	Mandelate Racemase Muconate Lactonizing
FY128_13015	COG1846	Transcriptional regulator
FY128_13020	COG0697	spore germination
FY128_13025	COG2309	aminopeptidase activity
FY128_13035	COG1393	Belongs to the ArsC family
FY128_13045	COG0518	GMP synthase (glutamine-hydrolyzing) activity
FY128_13045	COG0519	Catalyzes the synthesis of GMP from XMP
FY128_13060	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
FY128_13090	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
FY128_13100	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
FY128_13110	COG1968	undecaprenyl-diphosphatase activity
FY128_13125	COG0284	orotidine-5'-phosphate decarboxylase activity
FY128_13135	COG3963	phosphatidate phosphatase activity
FY128_13145	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
FY128_13150	COG0792	nuclease activity
FY128_13165	COG1175	transmembrane transport
FY128_13170	COG0395	ABC-type sugar transport system, permease component
FY128_13175	COG3842	ATPase activity
FY128_13185	COG0189	ligase activity
FY128_13195	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
FY128_13200	COG1280	lysine exporter protein (LysE YggA)
FY128_13205	COG0756	dUTP diphosphatase activity
FY128_13210	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
FY128_13215	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
FY128_13230	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
FY128_13235	COG2226	methyltransferase
FY128_13240	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
FY128_13245	COG1024	Enoyl-CoA hydratase
FY128_13250	COG0268	Binds directly to 16S ribosomal RNA
FY128_13310	COG4372	Transposase
FY128_13320	COG2963	transposase activity
FY128_13325	COG1715	Restriction endonuclease
FY128_13345	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
FY128_13350	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
FY128_13360	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
FY128_13415	COG1162	GTPase activity
FY128_13420	COG2814	Major facilitator Superfamily
FY128_13450	COG0596	Alpha beta hydrolase
FY128_13475	COG1764	response to oxidative stress
FY128_13485	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
FY128_13495	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FY128_13505	COG1414	Transcriptional regulator
FY128_13520	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_13540	COG1522	sequence-specific DNA binding
FY128_13575	COG0747	negative chemotaxis
FY128_13580	COG0601	transmembrane transport
FY128_13585	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_13590	COG4172	Belongs to the ABC transporter superfamily
FY128_13600	COG1027	Aspartate ammonia-lyase
FY128_13605	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FY128_13610	COG1126	abc transporter atp-binding protein
FY128_13615	COG0765	amino acid transport
FY128_13620	COG0765	amino acid transport
FY128_13625	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FY128_13640	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FY128_13645	COG1802	Transcriptional regulator
FY128_13650	COG3842	ATPase activity
FY128_13655	COG4209	transmembrane transport
FY128_13660	COG0395	ABC-type sugar transport system, permease component
FY128_13665	COG1653	transport
FY128_13675	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_13685	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FY128_13695	COG4948	Mandelate Racemase Muconate Lactonizing
FY128_13705	COG0071	Belongs to the small heat shock protein (HSP20) family
FY128_13720	COG0438	transferase activity, transferring glycosyl groups
FY128_13740	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FY128_13775	COG2197	response regulator
FY128_13780	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
FY128_13785	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FY128_13790	COG4310	Domain of unknown function (DUF2172)
FY128_13795	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
FY128_13805	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
FY128_13810	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
FY128_13815	COG2197	response regulator
FY128_13840	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FY128_13880	COG4178	(ABC) transporter
FY128_13900	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
FY128_13910	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
FY128_13920	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
FY128_13935	COG1177	transmembrane transport
FY128_13940	COG1176	ABC-type spermidine putrescine transport system, permease component I
FY128_13945	COG3842	ATPase activity
FY128_13975	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FY128_13980	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_13985	COG0601	transmembrane transport
FY128_13990	COG0747	negative chemotaxis
FY128_14020	COG1522	sequence-specific DNA binding
FY128_14035	COG0477	Major facilitator Superfamily
FY128_14040	COG0583	DNA-binding transcription factor activity
FY128_14060	COG0583	DNA-binding transcription factor activity
FY128_14070	COG0747	negative chemotaxis
FY128_14075	COG0601	transmembrane transport
FY128_14080	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_14100	COG1278	Cold shock
FY128_14120	COG2198	Histidine kinase
FY128_14120	COG0784	Response regulator, receiver
FY128_14120	COG5002	protein histidine kinase activity
FY128_14130	COG0405	Gamma-glutamyltransferase
FY128_14135	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_14140	COG0601	transmembrane transport
FY128_14145	COG0747	negative chemotaxis
FY128_14150	COG2186	Transcriptional regulator
FY128_14190	COG1595	DNA-templated transcription, initiation
FY128_14200	COG0395	ABC-type sugar transport system, permease component
FY128_14205	COG1176	ABC-type spermidine putrescine transport system, permease component I
FY128_14215	COG3842	ATPase activity
FY128_14225	COG0765	amino acid transport
FY128_14230	COG0765	amino acid transport
FY128_14235	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FY128_14240	COG2186	Transcriptional regulator
FY128_14255	COG1063	alcohol dehydrogenase
FY128_14260	COG3284	Transcriptional regulator
FY128_14290	COG1653	transport
FY128_14295	COG1175	transmembrane transport
FY128_14300	COG0395	ABC-type sugar transport system, permease component
FY128_14305	COG3842	ATPase activity
FY128_14315	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FY128_14320	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FY128_14325	COG1116	anion transmembrane transporter activity
FY128_14330	COG0395	ABC-type sugar transport system, permease component
FY128_14335	COG1175	transmembrane transport
FY128_14365	COG1609	Transcriptional regulator
FY128_14380	COG1082	Xylose isomerase domain protein TIM barrel
FY128_14385	COG3842	ATPase activity
FY128_14390	COG0395	ABC-type sugar transport system, permease component
FY128_14395	COG1175	transmembrane transport
FY128_14400	COG1653	transport
FY128_14405	COG1309	transcriptional regulator
FY128_14410	COG0673	inositol 2-dehydrogenase activity
FY128_14425	COG0673	inositol 2-dehydrogenase activity
FY128_14430	COG1278	Cold shock
FY128_14440	COG0828	Belongs to the bacterial ribosomal protein bS21 family
FY128_14470	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FY128_14475	COG0577	efflux transmembrane transporter activity
FY128_14475	COG1136	(ABC) transporter
FY128_14480	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FY128_14500	COG2205	protein histidine kinase activity
FY128_14505	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
FY128_14520	COG3842	ATPase activity
FY128_14525	COG0395	ABC-type sugar transport system, permease component
FY128_14530	COG1175	transmembrane transport
FY128_14550	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FY128_14555	COG3618	amidohydrolase
FY128_14560	COG4948	Mandelate Racemase Muconate Lactonizing
FY128_14565	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FY128_14570	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_14575	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
FY128_14580	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FY128_14585	COG2186	Transcriptional regulator
FY128_14600	COG0667	Aldo Keto reductase
FY128_14635	COG2223	nitrite transmembrane transporter activity
FY128_14640	COG0583	DNA-binding transcription factor activity
FY128_14645	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FY128_14655	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FY128_14660	COG2084	Dehydrogenase
FY128_14675	COG1609	Transcriptional regulator
FY128_14680	COG1063	alcohol dehydrogenase
FY128_14685	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_14695	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FY128_14700	COG4573	that is required for full activity and stability of the Y subunit. Could have a chaperone-like function for the proper and stable folding of
FY128_14705	COG1175	transmembrane transport
FY128_14710	COG0395	ABC-type sugar transport system, permease component
FY128_14725	COG0395	ABC-type sugar transport system, permease component
FY128_14735	COG2182	Extracellular solute-binding protein
FY128_14740	COG0626	cystathionine gamma-synthase activity
FY128_14750	COG0803	Belongs to the bacterial solute-binding protein 9 family
FY128_14760	COG1121	(ABC) transporter
FY128_14765	COG0523	cobalamin synthesis protein
FY128_14780	COG0523	cobalamin synthesis protein
FY128_14785	COG1653	transport
FY128_14790	COG1175	transmembrane transport
FY128_14795	COG0395	ABC-type sugar transport system, permease component
FY128_14800	COG3842	ATPase activity
FY128_14810	COG3047	cAMP biosynthetic process
FY128_14835	COG0583	DNA-binding transcription factor activity
FY128_14840	COG1879	ABC-type sugar transport system periplasmic component
FY128_14845	COG1172	Belongs to the binding-protein-dependent transport system permease family
FY128_14850	COG1129	ABC transporter
FY128_14855	COG5001	Diguanylate cyclase
FY128_14855	COG5002	protein histidine kinase activity
FY128_14855	COG3447	MASE1 domain protein
FY128_14860	COG3257	ureidoglycine aminohydrolase activity
FY128_14870	COG5001	Diguanylate cyclase
FY128_14875	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FY128_14885	COG0747	negative chemotaxis
FY128_14890	COG0601	transmembrane transport
FY128_14895	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_14900	COG0444	Belongs to the ABC transporter superfamily
FY128_14905	COG4608	Belongs to the ABC transporter superfamily
FY128_14910	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
FY128_14920	COG0129	dihydroxy-acid dehydratase activity
FY128_14925	COG1879	ABC-type sugar transport system periplasmic component
FY128_14930	COG1129	ABC transporter
FY128_14935	COG1172	Belongs to the binding-protein-dependent transport system permease family
FY128_14940	COG1172	Belongs to the binding-protein-dependent transport system permease family
FY128_14945	COG2186	Transcriptional regulator
FY128_14960	COG0587	DNA-directed DNA polymerase activity
FY128_14995	COG0673	inositol 2-dehydrogenase activity
FY128_15005	COG3842	ATPase activity
FY128_15010	COG0395	ABC-type sugar transport system, permease component
FY128_15015	COG1175	transmembrane transport
FY128_15020	COG1653	transport
FY128_15025	COG1940	carbohydrate kinase activity
FY128_15025	COG1846	Transcriptional regulator
FY128_15030	COG0673	inositol 2-dehydrogenase activity
FY128_15045	COG5001	Diguanylate cyclase
FY128_15060	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
FY128_15065	COG2894	cell division
FY128_15070	COG0850	regulation of cytokinetic process
FY128_15075	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FY128_15080	COG2186	Transcriptional regulator
FY128_15085	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FY128_15095	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FY128_15100	COG1063	alcohol dehydrogenase
FY128_15105	COG1312	Catalyzes the dehydration of D-mannonate
FY128_15120	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FY128_15125	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FY128_15125	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FY128_15130	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FY128_15145	COG0625	glutathione transferase activity
FY128_15155	COG1921	L-seryl-tRNASec selenium transferase activity
FY128_15170	COG3964	amidohydrolase
FY128_15180	COG0601	transmembrane transport
FY128_15185	COG0747	negative chemotaxis
FY128_15195	COG0438	transferase activity, transferring glycosyl groups
FY128_15235	COG4989	oxidoreductase activity
FY128_15245	COG2188	Transcriptional regulator
FY128_15250	COG3842	ATPase activity
FY128_15255	COG1653	transport
FY128_15260	COG1175	transmembrane transport
FY128_15265	COG0395	ABC-type sugar transport system, permease component
FY128_15270	COG1501	Belongs to the glycosyl hydrolase 31 family
FY128_15280	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FY128_15285	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FY128_15290	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
FY128_15295	COG0352	thiamine-phosphate diphosphorylase activity
FY128_15300	COG0351	phosphomethylpyrimidine kinase
FY128_15305	COG1522	sequence-specific DNA binding
FY128_15310	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FY128_15315	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FY128_15330	COG2204	response regulator
FY128_15335	COG4191	Histidine kinase
FY128_15340	COG1301	dicarboxylic acid transport
FY128_15350	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FY128_15355	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_15365	COG1473	amidohydrolase
FY128_15385	COG1215	transferase activity, transferring glycosyl groups
FY128_15395	COG2942	2-epimerase
FY128_15420	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FY128_15460	COG3307	-O-antigen
FY128_15465	COG1596	polysaccharide export
FY128_15470	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
FY128_15485	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FY128_15490	COG0840	transmembrane signaling receptor activity
FY128_15495	COG1376	ErfK ybiS ycfS ynhG family protein
FY128_15505	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_15515	COG2094	Belongs to the DNA glycosylase MPG family
FY128_15525	COG1609	Transcriptional regulator
FY128_15530	COG1653	transport
FY128_15545	COG3842	ATPase activity
FY128_15555	COG0673	inositol 2-dehydrogenase activity
FY128_15560	COG0602	queuosine metabolic process
FY128_15565	COG0720	synthase
FY128_15570	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
FY128_15575	COG0673	inositol 2-dehydrogenase activity
FY128_15590	COG0395	ABC-type sugar transport system, permease component
FY128_15595	COG1175	transmembrane transport
FY128_15620	COG0583	DNA-binding transcription factor activity
FY128_15625	COG0281	malic enzyme
FY128_15625	COG0280	phosphate acetyltransferase
FY128_15640	COG0765	amino acid transport
FY128_15645	COG1126	abc transporter atp-binding protein
FY128_15650	COG2079	MmgE PrpD family protein
FY128_15655	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FY128_15665	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FY128_15685	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FY128_15695	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FY128_15700	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
FY128_15705	COG1172	Belongs to the binding-protein-dependent transport system permease family
FY128_15710	COG1129	ABC transporter
FY128_15720	COG1473	amidohydrolase
FY128_15725	COG0747	negative chemotaxis
FY128_15740	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_15745	COG0601	transmembrane transport
FY128_15750	COG0583	DNA-binding transcription factor activity
FY128_15755	COG1446	asparaginase
FY128_15770	COG0747	negative chemotaxis
FY128_15790	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_15795	COG0601	transmembrane transport
FY128_15800	COG2197	response regulator
FY128_15805	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FY128_15810	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
FY128_15830	COG1595	DNA-templated transcription, initiation
FY128_15835	COG1120	ATPase activity
FY128_15840	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FY128_15855	COG2226	methyltransferase
FY128_15860	COG3794	PFAM blue (type 1) copper domain protein
FY128_15865	COG1120	ATPase activity
FY128_15870	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FY128_15890	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FY128_15900	COG1012	belongs to the aldehyde dehydrogenase family
FY128_15905	COG0473	3-isopropylmalate dehydrogenase activity
FY128_15910	COG1012	belongs to the aldehyde dehydrogenase family
FY128_15915	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FY128_15945	COG0601	transmembrane transport
FY128_15950	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_15955	COG4172	Belongs to the ABC transporter superfamily
FY128_15960	COG1522	sequence-specific DNA binding
FY128_15975	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FY128_15980	COG1126	abc transporter atp-binding protein
FY128_15990	COG1473	amidohydrolase
FY128_15995	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FY128_16000	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FY128_16005	COG1959	2 iron, 2 sulfur cluster binding
FY128_16015	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FY128_16020	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FY128_16040	COG1960	acyl-CoA dehydrogenase activity
FY128_16050	COG0747	negative chemotaxis
FY128_16065	COG0444	Belongs to the ABC transporter superfamily
FY128_16075	COG0667	Aldo Keto reductase
FY128_16085	COG0583	DNA-binding transcription factor activity
FY128_16090	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FY128_16105	COG0747	negative chemotaxis
FY128_16110	COG1473	amidohydrolase
FY128_16115	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FY128_16130	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FY128_16135	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FY128_16155	COG4608	Belongs to the ABC transporter superfamily
FY128_16160	COG0444	Belongs to the ABC transporter superfamily
FY128_16170	COG0601	transmembrane transport
FY128_16180	COG2186	Transcriptional regulator
FY128_16195	COG0300	oxidoreductase activity
FY128_16205	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FY128_16205	COG3453	Protein conserved in bacteria
FY128_16210	COG0640	Transcriptional regulator
FY128_16220	COG2391	methyltransferase activity
FY128_16225	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
FY128_16235	COG0022	dehydrogenase e1 component
FY128_16245	COG1960	acyl-CoA dehydrogenase activity
FY128_16250	COG0183	Belongs to the thiolase family
FY128_16260	COG1960	acyl-CoA dehydrogenase activity
FY128_16265	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
FY128_16280	COG1024	Enoyl-CoA hydratase
FY128_16285	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
FY128_16290	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
FY128_16295	COG4952	isomerase
FY128_16300	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_16300	COG3347	Dehydrogenase
FY128_16305	COG1349	DNA-binding transcription factor activity
FY128_16315	COG1129	ABC transporter
FY128_16320	COG1172	Belongs to the binding-protein-dependent transport system permease family
FY128_16325	COG1172	Belongs to the binding-protein-dependent transport system permease family
FY128_16330	COG3254	rhamnose metabolic process
FY128_16345	COG2264	protein methyltransferase activity
FY128_16350	COG5001	Diguanylate cyclase
FY128_16365	COG4335	DNA alkylation repair
FY128_16370	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
FY128_16375	COG4208	sulfate ABC transporter
FY128_16385	COG4150	thiosulfate binding
FY128_16390	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
FY128_16410	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
FY128_16420	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FY128_16430	COG1040	competence protein
FY128_16435	COG2226	methyltransferase
FY128_16450	COG0494	nUDIX hydrolase
FY128_16460	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
FY128_16465	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FY128_16470	COG0653	protein targeting
FY128_16540	COG2244	polysaccharide biosynthetic process
FY128_16555	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
FY128_16585	COG0438	transferase activity, transferring glycosyl groups
FY128_16590	COG0438	transferase activity, transferring glycosyl groups
FY128_16605	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FY128_16610	COG2273	Hydrolase Family 16
FY128_16610	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
FY128_16625	COG3842	ATPase activity
FY128_16630	COG3833	ABC-type maltose transport systems, permease component
FY128_16685	COG1396	sequence-specific DNA binding
FY128_16695	COG1129	ABC transporter
FY128_16700	COG4214	carbohydrate transport
FY128_16705	COG4213	ABC transporter substrate-binding protein
FY128_16720	COG0346	lactoylglutathione lyase activity
FY128_16725	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
FY128_16725	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
FY128_16730	COG4770	biotin carboxylase activity
FY128_16740	COG0625	glutathione transferase activity
FY128_16745	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
FY128_16750	COG1396	sequence-specific DNA binding
FY128_16750	COG3800	Transcriptional regulator
FY128_16760	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
FY128_16770	COG0300	oxidoreductase activity
FY128_16780	COG2096	Adenosyltransferase
FY128_16790	COG2086	electron transfer activity
FY128_16800	COG1250	3-hydroxyacyl-CoA dehydrogenase
FY128_16805	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FY128_16810	COG0165	Argininosuccinate lyase
FY128_16845	COG2884	Cell division ATP-binding protein ftsE
FY128_16865	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
FY128_16880	COG0287	Prephenate dehydrogenase
FY128_16885	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
FY128_16890	COG2226	methyltransferase
FY128_16895	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FY128_16910	COG0227	Belongs to the bacterial ribosomal protein bL28 family
FY128_16915	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
FY128_16950	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
FY128_16955	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
FY128_16965	COG4974	Belongs to the 'phage' integrase family
FY128_16970	COG0825	malonyl-CoA metabolic process
FY128_16975	COG3034	peptidoglycan biosynthetic process
FY128_16980	COG0425	Belongs to the sulfur carrier protein TusA family
FY128_16985	COG0523	cobalamin synthesis protein
FY128_16990	COG1686	Belongs to the peptidase S11 family
FY128_16995	COG1473	amidohydrolase
FY128_17005	COG4953	penicillin-binding protein 1C
FY128_17010	COG2373	Large extracellular alpha-helical protein
FY128_17015	COG2835	tetraacyldisaccharide 4'-kinase activity
FY128_17080	COG2801	Transposase and inactivated derivatives
FY128_17180	COG4373	Mu-like prophage FluMu protein gp28
FY128_17185	COG4383	Mu-like prophage protein gp29
FY128_17210	COG4397	Mu-like prophage major head subunit gpT
FY128_17220	COG4387	Mu-like prophage protein GP36
FY128_17275	COG3299	homolog of phage Mu protein gp47
FY128_17310	COG0482	sulfurtransferase activity
FY128_17325	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FY128_17340	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
FY128_17345	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FY128_17350	COG0037	tRNA processing
FY128_17360	COG2885	chlorophyll binding
FY128_17365	COG0823	Involved in the tonB-independent uptake of proteins
FY128_17385	COG0824	Thioesterase
FY128_17395	COG0494	nUDIX hydrolase
FY128_17410	COG2255	four-way junction helicase activity
FY128_17415	COG0632	four-way junction helicase activity
FY128_17420	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
FY128_17425	COG0840	transmembrane signaling receptor activity
FY128_17425	COG2972	Histidine kinase
FY128_17430	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FY128_17435	COG0217	transcriptional regulatory protein
FY128_17450	COG1692	metallophosphoesterase
FY128_17460	COG1253	flavin adenine dinucleotide binding
FY128_17500	COG0126	phosphoglycerate kinase activity
FY128_17505	COG3588	fructose-bisphosphate aldolase
FY128_17525	COG0254	rRNA binding
FY128_17530	COG1132	(ABC) transporter
FY128_17550	COG0483	inositol monophosphate 1-phosphatase activity
FY128_17580	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
FY128_17585	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
FY128_17590	COG0257	Belongs to the bacterial ribosomal protein bL36 family
FY128_17595	COG0457	Tetratricopeptide repeat
FY128_17600	COG3750	Belongs to the UPF0335 family
FY128_17620	COG0469	pyruvate kinase activity
FY128_17625	COG3108	Peptidase M15
FY128_17630	COG2204	response regulator
FY128_17635	COG1164	Oligoendopeptidase f
FY128_17640	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FY128_17650	COG5310	Homospermidine synthase
FY128_17660	COG0737	Belongs to the 5'-nucleotidase family
FY128_17665	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
FY128_17670	COG0330	HflC and HflK could
FY128_17695	COG1210	Utp--glucose-1-phosphate uridylyltransferase
FY128_17700	COG2951	lytic endotransglycosylase activity
FY128_17715	COG2205	protein histidine kinase activity
FY128_17730	COG0070	glutamate synthase
FY128_17730	COG0069	glutamate synthase activity
FY128_17730	COG0067	glutamate synthase
FY128_17745	COG2205	protein histidine kinase activity
FY128_17750	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
FY128_17755	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
FY128_17760	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
FY128_17770	COG0252	asparaginase activity
FY128_17780	COG1027	Aspartate ammonia-lyase
FY128_17785	COG2186	Transcriptional regulator
FY128_17810	COG3239	Fatty acid desaturase
FY128_17830	COG0583	DNA-binding transcription factor activity
FY128_17850	COG3842	ATPase activity
FY128_17855	COG1177	transmembrane transport
FY128_17875	COG1012	belongs to the aldehyde dehydrogenase family
FY128_17880	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FY128_17890	COG2267	carboxylic ester hydrolase activity
FY128_17905	COG1126	abc transporter atp-binding protein
FY128_17910	COG0765	amino acid transport
FY128_17930	COG0174	glutamine synthetase
FY128_17935	COG0069	glutamate synthase activity
FY128_17940	COG2218	PFAM glutamate synthase alpha subunit domain protein
FY128_17945	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
FY128_17965	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FY128_17975	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_17980	COG0601	transmembrane transport
FY128_17985	COG0747	negative chemotaxis
FY128_17995	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
FY128_18000	COG1454	alcohol dehydrogenase
FY128_18045	COG2307	Protein conserved in bacteria
FY128_18045	COG2308	Evidence 4 Homologs of previously reported genes of
FY128_18060	COG0488	(ABC) transporter
FY128_18065	COG1304	FMN binding
FY128_18070	COG1846	Transcriptional regulator
FY128_18075	COG0840	transmembrane signaling receptor activity
FY128_18075	COG2972	Histidine kinase
FY128_18080	COG1070	Carbohydrate kinase
FY128_18085	COG1830	Aldolase
FY128_18090	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
FY128_18095	COG0667	Aldo Keto reductase
FY128_18105	COG1172	Belongs to the binding-protein-dependent transport system permease family
FY128_18110	COG1129	ABC transporter
FY128_18115	COG1879	ABC-type sugar transport system periplasmic component
FY128_18145	COG0071	Belongs to the small heat shock protein (HSP20) family
FY128_18160	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
FY128_18175	COG0395	ABC-type sugar transport system, permease component
FY128_18185	COG3842	ATPase activity
FY128_18190	COG3842	ATPase activity
FY128_18205	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
FY128_18205	COG1648	precorrin-2 dehydrogenase activity
FY128_18210	COG0243	molybdopterin cofactor binding
FY128_18220	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
FY128_18225	COG1116	anion transmembrane transporter activity
FY128_18230	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FY128_18235	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FY128_18245	COG3707	response regulator
FY128_18250	COG1802	Transcriptional regulator
FY128_18255	COG1914	H( )-stimulated, divalent metal cation uptake system
FY128_18260	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
FY128_18265	COG4336	lyase activity
FY128_18270	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
FY128_18275	COG4770	biotin carboxylase activity
FY128_18280	COG0366	Alpha amylase catalytic
FY128_18290	COG4771	TonB-dependent receptor
FY128_18295	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
FY128_18315	COG1414	Transcriptional regulator
FY128_18320	COG1475	DNA binding
FY128_18325	COG1192	Involved in chromosome partitioning
FY128_18355	COG0596	Alpha beta hydrolase
FY128_18360	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
FY128_18370	COG2986	histidine ammonia-lyase
FY128_18375	COG1228	amidohydrolase
FY128_18380	COG0402	S-adenosylhomocysteine deaminase activity
FY128_18420	COG0511	ligase activity, forming carbon-carbon bonds
FY128_18425	COG0439	Biotin carboxylase
FY128_18440	COG1984	allophanate hydrolase subunit 2
FY128_18445	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
FY128_18450	COG0436	Aminotransferase
FY128_18460	COG4221	oxidoreductase activity
FY128_18465	COG0765	amino acid transport
FY128_18470	COG0765	amino acid transport
FY128_18475	COG1126	abc transporter atp-binding protein
FY128_18480	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FY128_18485	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FY128_18490	COG0010	Belongs to the arginase family
FY128_18495	COG1126	abc transporter atp-binding protein
FY128_18505	COG0765	amino acid transport
FY128_18520	COG0640	Transcriptional regulator
FY128_18530	COG0431	NADPH-dependent FMN reductase
FY128_18540	COG0798	PFAM Bile acid sodium symporter
FY128_18550	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FY128_18555	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FY128_18565	COG3842	ATPase activity
FY128_18570	COG0395	ABC-type sugar transport system, permease component
FY128_18575	COG1175	transmembrane transport
FY128_18585	COG0673	inositol 2-dehydrogenase activity
FY128_18590	COG0673	inositol 2-dehydrogenase activity
FY128_18625	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FY128_18630	COG0583	DNA-binding transcription factor activity
FY128_18635	COG0477	Major facilitator Superfamily
FY128_18645	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FY128_18655	COG4172	Belongs to the ABC transporter superfamily
FY128_18660	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_18665	COG0601	transmembrane transport
FY128_18680	COG0277	FAD linked oxidase domain protein
FY128_18700	COG2205	protein histidine kinase activity
FY128_18705	COG0745	RESPONSE REGULATOR receiver
FY128_18710	COG0671	phosphoesterase, PA-phosphatase related
FY128_18760	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
FY128_18770	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
FY128_18775	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FY128_18780	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FY128_18795	COG0010	Belongs to the arginase family
FY128_18805	COG0697	spore germination
FY128_18810	COG0673	inositol 2-dehydrogenase activity
FY128_18835	COG0477	Major facilitator Superfamily
FY128_18840	COG0642	Histidine kinase
FY128_18850	COG2194	sulfuric ester hydrolase activity
FY128_18860	COG0583	DNA-binding transcription factor activity
FY128_18865	COG4774	siderophore transport
FY128_18880	COG1120	ATPase activity
FY128_18895	COG2137	regulation of response to DNA damage stimulus
FY128_18900	COG3386	PFAM SMP-30 Gluconolaconase
FY128_18910	COG1172	Belongs to the binding-protein-dependent transport system permease family
FY128_18915	COG1129	ABC transporter
FY128_18920	COG1879	ABC-type sugar transport system periplasmic component
FY128_18925	COG4585	Histidine kinase
FY128_18930	COG2197	response regulator
FY128_18940	COG2133	pyrroloquinoline quinone binding
FY128_18950	COG0500	methyltransferase
FY128_18955	COG0564	pseudouridine synthase activity
FY128_18970	COG0517	IMP dehydrogenase activity
FY128_18970	COG4175	Glycine betaine
FY128_18975	COG4176	ABC-type proline glycine betaine transport system permease component
FY128_18985	COG4191	Histidine kinase
FY128_18985	COG0784	Response regulator, receiver
FY128_18995	COG3206	protein involved in exopolysaccharide biosynthesis
FY128_18995	COG0489	protein tyrosine kinase activity
FY128_19000	COG1210	Utp--glucose-1-phosphate uridylyltransferase
FY128_19005	COG1215	transferase activity, transferring glycosyl groups
FY128_19010	COG1215	transferase activity, transferring glycosyl groups
FY128_19015	COG1215	transferase activity, transferring glycosyl groups
FY128_19020	COG0438	transferase activity, transferring glycosyl groups
FY128_19025	COG2273	Hydrolase Family 16
FY128_19030	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
FY128_19035	COG2244	polysaccharide biosynthetic process
FY128_19040	COG0463	Glycosyl transferase, family 2
FY128_19045	COG2327	Polysaccharide pyruvyl transferase
FY128_19050	COG1215	transferase activity, transferring glycosyl groups
FY128_19070	COG0828	Belongs to the bacterial ribosomal protein bS21 family
FY128_19075	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FY128_19090	COG0446	pyridine nucleotide-disulphide oxidoreductase
FY128_19090	COG0404	The glycine cleavage system catalyzes the degradation of glycine
FY128_19115	COG1523	belongs to the glycosyl hydrolase 13 family
FY128_19120	COG0033	Phosphoglucomutase
FY128_19125	COG0297	glycogen (starch) synthase activity
FY128_19130	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
FY128_19135	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
FY128_19140	COG0058	SHG alpha-glucan phosphorylase activity
FY128_19155	COG1794	racemase activity, acting on amino acids and derivatives
FY128_19160	COG1522	sequence-specific DNA binding
FY128_19170	COG2084	Dehydrogenase
FY128_19175	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_19180	COG1063	alcohol dehydrogenase
FY128_19190	COG4988	ABC transporter
FY128_19195	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
FY128_19205	COG1294	oxidase, subunit
FY128_19235	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
FY128_19240	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
FY128_19270	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
FY128_19275	COG0539	negative regulation of cytoplasmic translation
FY128_19305	COG4221	oxidoreductase activity
FY128_19310	COG0006	proline dipeptidase activity
FY128_19315	COG0747	negative chemotaxis
FY128_19320	COG0601	transmembrane transport
FY128_19325	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_19330	COG0444	Belongs to the ABC transporter superfamily
FY128_19335	COG4608	Belongs to the ABC transporter superfamily
FY128_19350	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FY128_19365	COG0411	ABC transporter
FY128_19375	COG0559	Belongs to the binding-protein-dependent transport system permease family
FY128_19395	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FY128_19400	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_19420	COG4993	Dehydrogenase
FY128_19425	COG3685	Protein conserved in bacteria
FY128_19435	COG0693	protein deglycase activity
FY128_19460	COG0189	ligase activity
FY128_19465	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FY128_19470	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
FY128_19480	COG0435	Glutathione S-transferase
FY128_19485	COG0583	DNA-binding transcription factor activity
FY128_19490	COG1012	belongs to the aldehyde dehydrogenase family
FY128_19495	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FY128_19500	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FY128_19505	COG1116	anion transmembrane transporter activity
FY128_19515	COG1522	sequence-specific DNA binding
FY128_19530	COG0784	Response regulator, receiver
FY128_19550	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FY128_19570	COG0019	diaminopimelate decarboxylase activity
FY128_19585	COG0527	aspartate kinase activity
FY128_19595	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
FY128_19600	COG2890	protein-(glutamine-N5) methyltransferase activity
FY128_19610	COG0542	response to heat
FY128_19615	COG0741	lytic transglycosylase activity
FY128_19615	COG1196	nuclear chromosome segregation
FY128_19615	COG0739	heme binding
FY128_19655	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
FY128_19660	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FY128_19675	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FY128_19680	COG1309	transcriptional regulator
FY128_19685	COG4221	oxidoreductase activity
FY128_19690	COG1902	pentaerythritol trinitrate reductase activity
FY128_19695	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_19700	COG0604	alcohol dehydrogenase
FY128_19710	COG0243	molybdopterin cofactor binding
FY128_19715	COG2814	Major facilitator Superfamily
FY128_19725	COG0492	ferredoxin-NADP+ reductase activity
FY128_19735	COG4566	intracellular signal transduction
FY128_19740	COG4566	intracellular signal transduction
FY128_19750	COG2140	Oxalate decarboxylase
FY128_19755	COG0783	Belongs to the Dps family
FY128_19765	COG0583	DNA-binding transcription factor activity
FY128_19775	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_19780	COG1846	Transcriptional regulator
FY128_19795	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
FY128_19800	COG0583	DNA-binding transcription factor activity
FY128_19805	COG0346	lactoylglutathione lyase activity
FY128_19825	COG1574	metal-dependent hydrolase with the TIM-barrel fold
FY128_19850	COG2080	2 iron, 2 sulfur cluster binding
FY128_19855	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
FY128_19860	COG1529	Aldehyde oxidase and xanthine dehydrogenase
FY128_19865	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
FY128_19870	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
FY128_19890	COG1278	Cold shock
FY128_19920	COG2986	histidine ammonia-lyase
FY128_19940	COG4172	Belongs to the ABC transporter superfamily
FY128_19945	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_19950	COG0601	transmembrane transport
FY128_19955	COG4166	transmembrane transport
FY128_19960	COG0840	transmembrane signaling receptor activity
FY128_19970	COG5001	Diguanylate cyclase
FY128_19970	COG3300	MHYT domain
FY128_19990	COG1609	Transcriptional regulator
FY128_20005	COG1172	Belongs to the binding-protein-dependent transport system permease family
FY128_20010	COG1735	metal-dependent hydrolase with the TIM-barrel fold
FY128_20035	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
FY128_20040	COG1049	propionate catabolic process, 2-methylcitrate cycle
FY128_20050	COG0367	asparagine synthase
FY128_20060	COG0318	PFAM AMP-dependent synthetase and ligase
FY128_20065	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
FY128_20085	COG0446	pyridine nucleotide-disulphide oxidoreductase
FY128_20085	COG0404	The glycine cleavage system catalyzes the degradation of glycine
FY128_20090	COG4311	Sarcosine oxidase, delta subunit
FY128_20095	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FY128_20100	COG4977	sequence-specific DNA binding
FY128_20105	COG1129	ABC transporter
FY128_20115	COG1172	Belongs to the binding-protein-dependent transport system permease family
FY128_20130	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_20135	COG0246	Mannitol dehydrogenase
FY128_20140	COG1312	Catalyzes the dehydration of D-mannonate
FY128_20160	COG1309	transcriptional regulator
FY128_20165	COG1063	alcohol dehydrogenase
FY128_20175	COG1879	ABC-type sugar transport system periplasmic component
FY128_20185	COG1172	Belongs to the binding-protein-dependent transport system permease family
FY128_20205	COG0477	Major facilitator Superfamily
FY128_20215	COG0483	inositol monophosphate 1-phosphatase activity
FY128_20240	COG1178	ABC-type Fe3 transport system permease component
FY128_20245	COG3842	ATPase activity
FY128_20275	COG1253	flavin adenine dinucleotide binding
FY128_20290	COG3842	ATPase activity
FY128_20295	COG0395	ABC-type sugar transport system, permease component
FY128_20300	COG1175	transmembrane transport
FY128_20305	COG1653	transport
FY128_20315	COG0673	inositol 2-dehydrogenase activity
FY128_20320	COG1609	Transcriptional regulator
FY128_20335	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FY128_20345	COG0404	The glycine cleavage system catalyzes the degradation of glycine
FY128_20345	COG0446	pyridine nucleotide-disulphide oxidoreductase
FY128_20355	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
FY128_20365	COG0668	transmembrane transport
FY128_20395	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_20400	COG3433	isochorismatase activity
FY128_20400	COG1535	isochorismatase
FY128_20405	COG1021	2,3-dihydroxybenzoate-AMP ligase
FY128_20410	COG1169	isochorismate synthase
FY128_20420	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FY128_20420	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
FY128_20425	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FY128_20435	COG2375	cellular response to nickel ion
FY128_20445	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FY128_20450	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FY128_20455	COG1120	ATPase activity
FY128_20470	COG4774	siderophore transport
FY128_20470	COG1629	transport
FY128_20475	COG1960	acyl-CoA dehydrogenase activity
FY128_20480	COG0583	DNA-binding transcription factor activity
FY128_20485	COG1609	Transcriptional regulator
FY128_20495	COG1176	ABC-type spermidine putrescine transport system, permease component I
FY128_20515	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
FY128_20520	COG0583	DNA-binding transcription factor activity
FY128_20525	COG2814	Major facilitator Superfamily
FY128_20530	COG1473	amidohydrolase
FY128_20535	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
FY128_20545	COG0747	negative chemotaxis
FY128_20550	COG0601	transmembrane transport
FY128_20555	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_20560	COG0444	Belongs to the ABC transporter superfamily
FY128_20565	COG4608	Belongs to the ABC transporter superfamily
FY128_20570	COG0583	DNA-binding transcription factor activity
FY128_20575	COG0747	negative chemotaxis
FY128_20585	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_20590	COG0154	amidase activity
FY128_20595	COG0693	protein deglycase activity
FY128_20605	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_20610	COG0601	transmembrane transport
FY128_20620	COG1473	amidohydrolase
FY128_20625	COG4172	Belongs to the ABC transporter superfamily
FY128_20630	COG2390	Transcriptional regulator
FY128_20640	COG1175	transmembrane transport
FY128_20645	COG0395	ABC-type sugar transport system, permease component
FY128_20690	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FY128_20700	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
FY128_20705	COG1414	Transcriptional regulator
FY128_20710	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_20715	COG5487	UPF0391 membrane protein
FY128_20720	COG1108	ABC-type Mn2 Zn2 transport systems permease components
FY128_20725	COG1108	ABC-type Mn2 Zn2 transport systems permease components
FY128_20730	COG1121	(ABC) transporter
FY128_20735	COG0803	Belongs to the bacterial solute-binding protein 9 family
FY128_20745	COG1752	Esterase of the alpha-beta hydrolase superfamily
FY128_20750	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
FY128_20755	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
FY128_20760	COG0471	metal ion transport
FY128_20760	COG3273	potassium ion transport
FY128_20765	COG1253	flavin adenine dinucleotide binding
FY128_20770	COG1309	transcriptional regulator
FY128_20785	COG1609	Transcriptional regulator
FY128_20790	COG1070	Carbohydrate kinase
FY128_20795	COG2115	Belongs to the xylose isomerase family
FY128_20805	COG0778	Nitroreductase
FY128_20810	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FY128_20815	COG2011	ABC-type metal ion transport system permease component
FY128_20825	COG3300	MHYT domain
FY128_20825	COG5001	Diguanylate cyclase
FY128_20830	COG1054	Belongs to the UPF0176 family
FY128_20840	COG2954	triphosphatase activity
FY128_20845	COG0800	Aldolase
FY128_20865	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
FY128_20900	COG0523	cobalamin synthesis protein
FY128_20910	COG1846	Transcriptional regulator
FY128_20915	COG1609	Transcriptional regulator
FY128_20920	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FY128_20925	COG0673	inositol 2-dehydrogenase activity
FY128_20930	COG3718	enzyme involved in inositol metabolism
FY128_20940	COG3962	Belongs to the TPP enzyme family
FY128_20945	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FY128_20955	COG3842	ATPase activity
FY128_20975	COG0683	leucine binding
FY128_20990	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_21000	COG0747	negative chemotaxis
FY128_21015	COG1082	Xylose isomerase domain protein TIM barrel
FY128_21015	COG3185	4-Hydroxyphenylpyruvate dioxygenase
FY128_21025	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
FY128_21030	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
FY128_21035	COG1126	abc transporter atp-binding protein
FY128_21040	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FY128_21045	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FY128_21050	COG0765	amino acid transport
FY128_21055	COG0765	amino acid transport
FY128_21065	COG3485	protocatechuate 3,4-dioxygenase
FY128_21070	COG3485	protocatechuate 3,4-dioxygenase
FY128_21075	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FY128_21085	COG0583	DNA-binding transcription factor activity
FY128_21100	COG1414	Transcriptional regulator
FY128_21110	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FY128_21115	COG0183	Belongs to the thiolase family
FY128_21120	COG1609	Transcriptional regulator
FY128_21130	COG1082	Xylose isomerase domain protein TIM barrel
FY128_21135	COG0673	inositol 2-dehydrogenase activity
FY128_21145	COG1609	Transcriptional regulator
FY128_21150	COG0395	ABC-type sugar transport system, permease component
FY128_21155	COG1175	transmembrane transport
FY128_21160	COG3842	ATPase activity
FY128_21170	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
FY128_21200	COG3842	ATPase activity
FY128_21205	COG4149	molybdate abc transporter
FY128_21215	COG0584	glycerophosphoryl diester phosphodiesterase
FY128_21220	COG0483	inositol monophosphate 1-phosphatase activity
FY128_21235	COG3842	ATPase activity
FY128_21240	COG1177	transmembrane transport
FY128_21255	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
FY128_21300	COG0385	Bile acid
FY128_21310	COG0179	Fumarylacetoacetate (FAA) hydrolase
FY128_21320	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_21330	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FY128_21345	COG1132	(ABC) transporter
FY128_21375	COG3547	Transposase (IS116 IS110 IS902 family)
FY128_21415	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
FY128_21415	COG2755	lipolytic protein G-D-S-L family
FY128_21470	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
FY128_21480	COG3547	Transposase (IS116 IS110 IS902 family)
FY128_21495	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
FY128_21500	COG1091	dTDP-4-dehydrorhamnose reductase activity
FY128_21505	COG1088	dTDP-glucose 4,6-dehydratase activity
FY128_21510	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
FY128_21525	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FY128_21530	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FY128_21535	COG1120	ATPase activity
FY128_21540	COG4774	siderophore transport
FY128_21545	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FY128_21560	COG1609	Transcriptional regulator
FY128_21565	COG1233	COG1233 Phytoene dehydrogenase and related
FY128_21580	COG0395	ABC-type sugar transport system, permease component
FY128_21585	COG3842	ATPase activity
FY128_21590	COG4608	Belongs to the ABC transporter superfamily
FY128_21595	COG0444	Belongs to the ABC transporter superfamily
FY128_21600	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_21605	COG0601	transmembrane transport
FY128_21610	COG2186	Transcriptional regulator
FY128_21620	COG0747	negative chemotaxis
FY128_21630	COG5001	Diguanylate cyclase
FY128_21630	COG3300	MHYT domain
FY128_21635	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_21645	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
FY128_21655	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
FY128_21660	COG0306	phosphate transporter
FY128_21665	COG1392	Phosphate transport regulator
FY128_21690	COG5002	protein histidine kinase activity
FY128_21705	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
FY128_21715	COG4774	siderophore transport
FY128_21725	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FY128_21730	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FY128_21735	COG1120	ATPase activity
FY128_21740	COG1733	regulation of RNA biosynthetic process
FY128_21765	COG3547	Transposase (IS116 IS110 IS902 family)
FY128_21770	COG1012	belongs to the aldehyde dehydrogenase family
FY128_21775	COG0583	DNA-binding transcription factor activity
FY128_21785	COG3119	arylsulfatase activity
FY128_21790	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FY128_21795	COG3842	ATPase activity
FY128_21800	COG0165	Argininosuccinate lyase
FY128_21805	COG0395	ABC-type sugar transport system, permease component
FY128_21810	COG1175	transmembrane transport
FY128_21815	COG2182	Extracellular solute-binding protein
FY128_21820	COG1940	carbohydrate kinase activity
FY128_21845	COG1486	melibiose metabolic process
FY128_21850	COG0747	negative chemotaxis
FY128_21855	COG0601	transmembrane transport
FY128_21860	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_21865	COG4172	Belongs to the ABC transporter superfamily
FY128_21870	COG1486	melibiose metabolic process
FY128_21875	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FY128_21880	COG1129	ABC transporter
FY128_21880	COG0842	Transport permease protein
FY128_21885	COG0842	Transport permease protein
FY128_21900	COG0784	Response regulator, receiver
FY128_21905	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
FY128_21915	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FY128_21920	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FY128_21935	COG0765	amino acid transport
FY128_21945	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FY128_21955	COG3938	Belongs to the proline racemase family
FY128_21970	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FY128_21975	COG0765	amino acid transport
FY128_21980	COG0765	amino acid transport
FY128_21990	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FY128_22005	COG0402	S-adenosylhomocysteine deaminase activity
FY128_22015	COG0601	transmembrane transport
FY128_22020	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_22030	COG0402	S-adenosylhomocysteine deaminase activity
FY128_22035	COG0444	Belongs to the ABC transporter superfamily
FY128_22040	COG4608	Belongs to the ABC transporter superfamily
FY128_22045	COG1802	Transcriptional regulator
FY128_22050	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FY128_22075	COG3383	formate dehydrogenase (NAD+) activity
FY128_22085	COG2223	nitrite transmembrane transporter activity
FY128_22090	COG0456	acetyltransferase
FY128_22120	COG3237	CsbD-like
FY128_22125	COG2197	response regulator
FY128_22130	COG3181	Tripartite tricarboxylate transporter family receptor
FY128_22135	COG5265	(ABC) transporter
FY128_22140	COG0640	Transcriptional regulator
FY128_22155	COG0753	catalase activity
FY128_22200	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
FY128_22220	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
FY128_22225	COG5001	Diguanylate cyclase
FY128_22225	COG3706	GGDEF domain
FY128_22225	COG2203	Gaf domain
FY128_22225	COG4251	negative regulation of phosphorylation
FY128_22235	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FY128_22240	COG3046	protein related to deoxyribodipyrimidine photolyase
FY128_22285	COG1595	DNA-templated transcription, initiation
FY128_22295	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_22300	COG1309	transcriptional regulator
FY128_22320	COG1126	abc transporter atp-binding protein
FY128_22325	COG0765	amino acid transport
FY128_22330	COG0765	amino acid transport
FY128_22335	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FY128_22340	COG3608	succinylglutamate desuccinylase aspartoacylase
FY128_22345	COG0006	proline dipeptidase activity
FY128_22350	COG2423	ornithine cyclodeaminase activity
FY128_22355	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FY128_22360	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FY128_22365	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FY128_22375	COG1522	sequence-specific DNA binding
FY128_22545	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
FY128_22545	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
FY128_22625	COG0753	catalase activity
FY128_22630	COG3685	Protein conserved in bacteria
FY128_22660	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
FY128_22665	COG0297	glycogen (starch) synthase activity
FY128_22835	COG1192	Involved in chromosome partitioning
FY128_22840	COG1475	DNA binding
FY128_22845	COG0640	Transcriptional regulator
FY128_22870	COG0583	DNA-binding transcription factor activity
FY128_22910	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
FY128_22910	COG1796	DNA polymerase
FY128_22915	COG4172	Belongs to the ABC transporter superfamily
FY128_22920	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_22925	COG0601	transmembrane transport
FY128_22940	COG0583	DNA-binding transcription factor activity
FY128_22945	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FY128_22975	COG3971	2-oxopent-4-enoate hydratase activity
FY128_22980	COG3485	protocatechuate 3,4-dioxygenase
FY128_23075	COG1204	response to ionizing radiation
FY128_23105	COG3547	Transposase (IS116 IS110 IS902 family)
FY128_23120	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_23125	COG1733	regulation of RNA biosynthetic process
FY128_23135	COG0477	Major facilitator Superfamily
FY128_23140	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_23145	COG1794	racemase activity, acting on amino acids and derivatives
FY128_23155	COG0300	oxidoreductase activity
FY128_23170	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
FY128_23175	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
FY128_23190	COG0287	Prephenate dehydrogenase
FY128_23190	COG1605	Chorismate mutase
FY128_23195	COG0583	DNA-binding transcription factor activity
FY128_23200	COG0300	oxidoreductase activity
FY128_23215	COG1376	ErfK ybiS ycfS ynhG family protein
FY128_23225	COG0251	oxidation-reduction process
FY128_23265	COG0300	oxidoreductase activity
FY128_23280	COG0395	ABC-type sugar transport system, permease component
FY128_23305	COG3220	belongs to the UPF0276 family
FY128_23330	COG5383	Protein conserved in bacteria
FY128_23335	COG1012	belongs to the aldehyde dehydrogenase family
FY128_23340	COG0436	Aminotransferase
FY128_23345	COG0247	lactate metabolic process
FY128_23345	COG0277	FAD linked oxidase domain protein
FY128_23350	COG0028	Belongs to the TPP enzyme family
FY128_23360	COG1126	abc transporter atp-binding protein
FY128_23365	COG0765	amino acid transport
FY128_23380	COG0583	DNA-binding transcription factor activity
FY128_23410	COG4771	TonB-dependent receptor
FY128_23425	COG0747	negative chemotaxis
FY128_23430	COG0601	transmembrane transport
FY128_23435	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_23445	COG4608	Belongs to the ABC transporter superfamily
FY128_23465	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
FY128_23495	COG4221	oxidoreductase activity
FY128_23500	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_23510	COG3620	sequence-specific DNA binding
FY128_23515	COG3550	peptidyl-serine autophosphorylation
FY128_23520	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
FY128_23525	COG3657	addiction module killer protein
FY128_23535	COG3609	addiction module antidote protein, CC2985 family
FY128_23550	COG2072	flavoprotein involved in K transport
FY128_23560	COG2144	transferase activity, transferring acyl groups
FY128_23570	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
FY128_23585	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FY128_23595	COG0640	Transcriptional regulator
FY128_23625	COG5001	Diguanylate cyclase
FY128_23625	COG3300	MHYT domain
FY128_23630	COG3706	GGDEF domain
FY128_23640	COG1840	ABC-type Fe3 transport system, periplasmic component
FY128_23650	COG3842	ATPase activity
FY128_23680	COG4191	Histidine kinase
FY128_23685	COG0300	oxidoreductase activity
FY128_23720	COG0583	DNA-binding transcription factor activity
FY128_23730	COG3481	metal-dependent phosphohydrolase, HD sub domain
FY128_23735	COG0765	amino acid transport
FY128_23740	COG0765	amino acid transport
FY128_23745	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FY128_23755	COG2084	Dehydrogenase
FY128_23765	COG0251	oxidation-reduction process
FY128_23775	COG1902	pentaerythritol trinitrate reductase activity
FY128_23780	COG1609	Transcriptional regulator
FY128_23790	COG1172	Belongs to the binding-protein-dependent transport system permease family
FY128_23805	COG0673	inositol 2-dehydrogenase activity
FY128_23815	COG1802	Transcriptional regulator
FY128_23850	COG2207	Transcriptional regulator
FY128_23865	COG0596	Alpha beta hydrolase
FY128_23895	COG1335	isochorismatase
FY128_23900	COG0596	Alpha beta hydrolase
FY128_23910	COG0596	Alpha beta hydrolase
FY128_23925	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FY128_23940	COG1959	2 iron, 2 sulfur cluster binding
FY128_23945	COG1309	transcriptional regulator
FY128_23950	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_23960	COG2814	Major facilitator Superfamily
FY128_23965	COG0789	Transcriptional regulator
FY128_23965	COG4978	Transcriptional regulator
FY128_23970	COG2205	protein histidine kinase activity
FY128_23975	COG0745	RESPONSE REGULATOR receiver
FY128_23985	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FY128_24040	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FY128_24060	COG0840	transmembrane signaling receptor activity
FY128_24095	COG0587	DNA-directed DNA polymerase activity
FY128_24115	COG5489	Protein of unknown function (DUF736)
FY128_24120	COG0776	regulation of translation
FY128_24125	COG3831	ATPase activity
FY128_24130	COG3505	Type IV secretory pathway VirD4
FY128_24170	COG0840	transmembrane signaling receptor activity
FY128_24175	COG0640	Transcriptional regulator
FY128_24180	COG0583	DNA-binding transcription factor activity
FY128_24190	COG0038	chloride channel
FY128_24225	COG0745	RESPONSE REGULATOR receiver
FY128_24230	COG1228	amidohydrolase
FY128_24265	COG3842	ATPase activity
FY128_24270	COG4208	sulfate ABC transporter
FY128_24275	COG1176	ABC-type spermidine putrescine transport system, permease component I
FY128_24280	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
FY128_24295	COG0577	efflux transmembrane transporter activity
FY128_24305	COG1414	Transcriptional regulator
FY128_24315	COG1454	alcohol dehydrogenase
FY128_24320	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FY128_24360	COG1285	pathogenesis
FY128_24380	COG1733	regulation of RNA biosynthetic process
FY128_24435	COG3838	Conjugal transfer protein Trbc
FY128_24440	COG3702	type iv secretory pathway
FY128_24445	COG3451	type IV secretory pathway VirB4
FY128_24460	COG3704	protein secretion by the type IV secretion system
FY128_24470	COG3736	Type IV secretory pathway, component VirB8
FY128_24475	COG3504	Conjugal transfer protein
FY128_24480	COG2948	multi-organism process
FY128_24485	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
FY128_24490	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FY128_24495	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FY128_24505	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
FY128_24525	COG4191	Histidine kinase
FY128_24525	COG0784	Response regulator, receiver
FY128_24540	COG1473	amidohydrolase
FY128_24545	COG4608	Belongs to the ABC transporter superfamily
FY128_24550	COG0444	Belongs to the ABC transporter superfamily
FY128_24555	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_24560	COG0601	transmembrane transport
FY128_24565	COG0747	negative chemotaxis
FY128_24580	COG2072	flavoprotein involved in K transport
FY128_24600	COG3842	ATPase activity
FY128_24605	COG1176	ABC-type spermidine putrescine transport system, permease component I
FY128_24615	COG2272	Belongs to the type-B carboxylesterase lipase family
FY128_24660	COG0745	RESPONSE REGULATOR receiver
FY128_24670	COG0745	RESPONSE REGULATOR receiver
FY128_24690	COG2205	protein histidine kinase activity
FY128_24710	COG4957	zinc ion binding
FY128_24740	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
FY128_24750	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
FY128_24760	COG4691	Plasmid stability protein
FY128_24765	COG1487	ribonuclease activity
FY128_24770	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FY128_24780	COG2186	Transcriptional regulator
FY128_24785	COG0747	negative chemotaxis
FY128_24790	COG0601	transmembrane transport
FY128_24795	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_24800	COG4172	Belongs to the ABC transporter superfamily
FY128_24805	COG4948	Mandelate Racemase Muconate Lactonizing
FY128_24830	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FY128_24835	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FY128_24850	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
FY128_24875	COG1176	ABC-type spermidine putrescine transport system, permease component I
FY128_24880	COG3842	ATPase activity
FY128_24885	COG0483	inositol monophosphate 1-phosphatase activity
FY128_24890	COG0628	permease
FY128_24905	COG3734	2-keto-3-deoxy-galactonokinase
FY128_24910	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FY128_24915	COG4948	Mandelate Racemase Muconate Lactonizing
FY128_24925	COG1175	transmembrane transport
FY128_24930	COG0395	ABC-type sugar transport system, permease component
FY128_24935	COG3842	ATPase activity
FY128_24940	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FY128_24945	COG1414	Transcriptional regulator
FY128_24950	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_24955	COG2207	Transcriptional regulator
FY128_24975	COG1566	PFAM secretion protein HlyD family protein
FY128_24985	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FY128_24990	COG1120	ATPase activity
FY128_25000	COG4774	siderophore transport
FY128_25015	COG0583	DNA-binding transcription factor activity
FY128_25020	COG0667	Aldo Keto reductase
FY128_25025	COG0583	DNA-binding transcription factor activity
FY128_25030	COG0604	alcohol dehydrogenase
FY128_25035	COG1609	Transcriptional regulator
FY128_25040	COG1082	Xylose isomerase domain protein TIM barrel
FY128_25045	COG0673	inositol 2-dehydrogenase activity
FY128_25050	COG1082	Xylose isomerase domain protein TIM barrel
FY128_25060	COG0405	Gamma-glutamyltransferase
FY128_25065	COG1120	ATPase activity
FY128_25080	COG4774	siderophore transport
FY128_25105	COG1215	transferase activity, transferring glycosyl groups
FY128_25140	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FY128_25160	COG0840	transmembrane signaling receptor activity
FY128_25170	COG0156	8-amino-7-oxononanoate synthase activity
FY128_25175	COG2197	response regulator
FY128_25190	COG2390	Transcriptional regulator
FY128_25195	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
FY128_25200	COG3958	Transketolase
FY128_25205	COG3959	Transketolase, thiamine diphosphate binding domain
FY128_25210	COG1172	Belongs to the binding-protein-dependent transport system permease family
FY128_25220	COG1129	ABC transporter
FY128_25225	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_25230	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
FY128_25260	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_25280	COG0583	DNA-binding transcription factor activity
FY128_25295	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
FY128_25300	COG1741	Belongs to the pirin family
FY128_25305	COG1335	isochorismatase
FY128_25315	COG1733	regulation of RNA biosynthetic process
FY128_25320	COG3321	synthase
FY128_25320	COG0604	alcohol dehydrogenase
FY128_25320	COG1028	Short-chain dehydrogenase reductase Sdr
FY128_25325	COG0583	DNA-binding transcription factor activity
FY128_25345	COG1017	nitric oxide dioxygenase activity
FY128_25345	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FY128_25350	COG0625	glutathione transferase activity
FY128_25360	COG0583	DNA-binding transcription factor activity
FY128_25385	COG1349	DNA-binding transcription factor activity
FY128_25390	COG1879	ABC-type sugar transport system periplasmic component
FY128_25395	COG1129	ABC transporter
FY128_25400	COG1172	Belongs to the binding-protein-dependent transport system permease family
FY128_25405	COG1172	Belongs to the binding-protein-dependent transport system permease family
FY128_25425	COG1012	belongs to the aldehyde dehydrogenase family
FY128_25430	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FY128_25485	COG0668	transmembrane transport
FY128_25500	COG1566	PFAM secretion protein HlyD family protein
FY128_25515	COG2207	Transcriptional regulator
FY128_25525	COG4302	ethanolamine ammonia-lyase activity
FY128_25550	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FY128_25555	COG1349	DNA-binding transcription factor activity
FY128_25560	COG4608	Belongs to the ABC transporter superfamily
FY128_25570	COG0601	transmembrane transport
FY128_25575	COG0747	negative chemotaxis
FY128_25585	COG3842	ATPase activity
FY128_25590	COG1063	alcohol dehydrogenase
FY128_25595	COG0395	ABC-type sugar transport system, permease component
FY128_25600	COG1175	transmembrane transport
FY128_25605	COG1653	transport
FY128_25635	COG0326	Molecular chaperone. Has ATPase activity
FY128_25645	COG1881	PFAM PEBP family protein
FY128_25655	COG1132	(ABC) transporter
FY128_25680	COG0071	Belongs to the small heat shock protein (HSP20) family
FY128_25690	COG2217	Heavy metal translocating P-type atpase
FY128_25700	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
FY128_25710	COG0745	RESPONSE REGULATOR receiver
FY128_25715	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FY128_25720	COG4191	Histidine kinase
FY128_25720	COG0784	Response regulator, receiver
FY128_25740	COG2079	MmgE PrpD family protein
FY128_25750	COG1126	abc transporter atp-binding protein
FY128_25760	COG0165	Argininosuccinate lyase
FY128_25780	COG0784	Response regulator, receiver
FY128_25780	COG4191	Histidine kinase
FY128_25795	COG0583	DNA-binding transcription factor activity
FY128_25800	COG0667	Aldo Keto reductase
FY128_25835	COG1278	Cold shock
FY128_25850	COG1126	abc transporter atp-binding protein
FY128_25855	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FY128_25865	COG1192	Involved in chromosome partitioning
FY128_25870	COG1475	DNA binding
FY128_25875	COG0640	Transcriptional regulator
FY128_25880	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
FY128_25910	COG2211	Major facilitator Superfamily
FY128_25955	COG4974	Belongs to the 'phage' integrase family
FY128_25960	COG1051	belongs to the nudix hydrolase family
FY128_26000	COG1475	DNA binding
FY128_26025	COG2824	Alkylphosphonate utilization operon protein PhnA
FY128_26045	COG1280	lysine exporter protein (LysE YggA)
FY128_26110	COG5489	Protein of unknown function (DUF736)
FY128_26195	COG1283	sodium-dependent phosphate transmembrane transporter activity
FY128_26210	COG0747	negative chemotaxis
FY128_26230	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_26235	COG0584	glycerophosphoryl diester phosphodiesterase
FY128_26240	COG0483	inositol monophosphate 1-phosphatase activity
FY128_26305	COG3161	chorismate lyase activity
FY128_26455	COG3436	PFAM IS66 Orf2 family protein
FY128_26550	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FY128_26580	COG0583	DNA-binding transcription factor activity
FY128_26585	COG0747	negative chemotaxis
FY128_26600	COG0252	asparaginase activity
FY128_26605	COG0583	DNA-binding transcription factor activity
FY128_26625	COG3842	ATPase activity
FY128_26650	COG3701	Conjugal transfer protein
FY128_26655	COG3846	protein secretion by the type IV secretion system
FY128_26665	COG5314	conjugation
FY128_26670	COG3451	type IV secretory pathway VirB4
FY128_26685	COG4962	Type ii secretion system protein e
FY128_26710	COG1396	sequence-specific DNA binding
FY128_26780	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
FY128_26785	COG2948	multi-organism process
FY128_26815	COG0741	lytic transglycosylase activity
FY128_26820	COG3838	Conjugal transfer protein Trbc
FY128_26830	COG3451	type IV secretory pathway VirB4
FY128_26835	COG0739	heme binding
FY128_26835	COG0741	lytic transglycosylase activity
FY128_26835	COG1196	nuclear chromosome segregation
FY128_26920	COG1396	sequence-specific DNA binding
FY128_26955	COG3547	Transposase (IS116 IS110 IS902 family)