locus-tag class description FY139_00065 PF06472 ABC transporter transmembrane region 2 FY139_00065 PF00005 ABC transporter FY139_00090 PF01261 Xylose isomerase-like TIM barrel FY139_00095 PF00485 Phosphoribulokinase / Uridine kinase family FY139_00100 PF01261 Xylose isomerase-like TIM barrel FY139_00105 PF02653 Branched-chain amino acid transport system / permease component FY139_00110 PF02653 Branched-chain amino acid transport system / permease component FY139_00115 PF00005 ABC transporter FY139_00125 PF00356 Bacterial regulatory proteins, lacI family FY139_00135 PF01590 GAF domain FY139_00135 PF02954 Bacterial regulatory protein, Fis family FY139_00135 PF00158 Sigma-54 interaction domain FY139_00140 PF08240 Alcohol dehydrogenase GroES-like domain FY139_00140 PF00107 Zinc-binding dehydrogenase FY139_00150 PF00132 Bacterial transferase hexapeptide (six repeats) FY139_00155 PF00330 Aconitase family (aconitate hydratase) FY139_00155 PF11791 Aconitate B N-terminal domain FY139_00155 PF06434 Aconitate hydratase 2 N-terminus FY139_00170 PF13953 PapC C-terminal domain FY139_00170 PF00577 Outer membrane usher protein FY139_00170 PF13954 PapC N-terminal domain FY139_00180 PF00005 ABC transporter FY139_00185 PF00664 ABC transporter transmembrane region FY139_00185 PF00005 ABC transporter FY139_00190 PF03401 Tripartite tricarboxylate transporter family receptor FY139_00195 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FY139_00195 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FY139_00205 PF05532 CsbD-like FY139_00225 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00230 PF17850 CysA C-terminal regulatory domain FY139_00230 PF00005 ABC transporter FY139_00240 PF00459 Inositol monophosphatase family FY139_00245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_00245 PF00005 ABC transporter FY139_00255 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_00255 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00260 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_00270 PF07729 FCD domain FY139_00270 PF00392 Bacterial regulatory proteins, gntR family FY139_00280 PF13378 Enolase C-terminal domain-like FY139_00280 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FY139_00285 PF00005 ABC transporter FY139_00285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_00290 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00290 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_00295 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_00305 PF07729 FCD domain FY139_00305 PF00392 Bacterial regulatory proteins, gntR family FY139_00310 PF08450 SMP-30/Gluconolactonase/LRE-like region FY139_00315 PF00701 Dihydrodipicolinate synthetase family FY139_00320 PF07690 Major Facilitator Superfamily FY139_00330 PF00037 4Fe-4S binding domain FY139_00330 PF00384 Molybdopterin oxidoreductase FY139_00330 PF01568 Molydopterin dinucleotide binding domain FY139_00330 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FY139_00330 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FY139_00335 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FY139_00335 PF00037 4Fe-4S binding domain FY139_00335 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FY139_00345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_00345 PF03466 LysR substrate binding domain FY139_00350 PF01613 Flavin reductase like domain FY139_00355 PF02530 Porin subfamily FY139_00360 PF00563 EAL domain FY139_00360 PF00990 Diguanylate cyclase, GGDEF domain FY139_00360 PF03707 Bacterial signalling protein N terminal repeat FY139_00365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FY139_00365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FY139_00370 PF00005 ABC transporter FY139_00375 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00380 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00385 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY139_00395 PF00356 Bacterial regulatory proteins, lacI family FY139_00400 PF05544 Proline racemase FY139_00410 PF01266 FAD dependent oxidoreductase FY139_00415 PF00005 ABC transporter FY139_00420 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00425 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00435 PF02615 Malate/L-lactate dehydrogenase FY139_00440 PF00701 Dihydrodipicolinate synthetase family FY139_00445 PF00392 Bacterial regulatory proteins, gntR family FY139_00445 PF07729 FCD domain FY139_00450 PF12327 FtsZ family, C-terminal domain FY139_00450 PF00091 Tubulin/FtsZ family, GTPase domain FY139_00455 PF00072 Response regulator receiver domain FY139_00475 PF00005 ABC transporter FY139_00480 PF13533 Biotin-lipoyl like FY139_00485 PF02056 Family 4 glycosyl hydrolase FY139_00485 PF11975 Family 4 glycosyl hydrolase C-terminal domain FY139_00490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_00490 PF00005 ABC transporter FY139_00495 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00495 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_00500 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_00510 PF11975 Family 4 glycosyl hydrolase C-terminal domain FY139_00510 PF02056 Family 4 glycosyl hydrolase FY139_00535 PF00480 ROK family FY139_00540 PF13416 Bacterial extracellular solute-binding protein FY139_00545 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00550 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00555 PF00206 Lyase FY139_00555 PF14698 Argininosuccinate lyase C-terminal FY139_00560 PF08402 TOBE domain FY139_00560 PF00005 ABC transporter FY139_00565 PF00294 pfkB family carbohydrate kinase FY139_00570 PF00884 Sulfatase FY139_00570 PF12411 Choline sulfatase enzyme C terminal FY139_00575 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FY139_00580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_00580 PF03466 LysR substrate binding domain FY139_00585 PF00005 ABC transporter FY139_00590 PF01032 FecCD transport family FY139_00595 PF01032 FecCD transport family FY139_00605 PF07715 TonB-dependent Receptor Plug Domain FY139_00605 PF00593 TonB dependent receptor FY139_00610 PF12833 Helix-turn-helix domain FY139_00615 PF00141 Peroxidase FY139_00620 PF03466 LysR substrate binding domain FY139_00620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_00630 PF00512 His Kinase A (phospho-acceptor) domain FY139_00630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_00630 PF00672 HAMP domain FY139_00635 PF00486 Transcriptional regulatory protein, C terminal FY139_00635 PF00072 Response regulator receiver domain FY139_00640 PF00529 HlyD membrane-fusion protein of T1SS FY139_00640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY139_00645 PF00873 AcrB/AcrD/AcrF family FY139_00655 PF01865 Protein of unknown function DUF47 FY139_00660 PF01384 Phosphate transporter family FY139_00665 PF02735 Ku70/Ku80 beta-barrel domain FY139_00670 PF13298 DNA polymerase Ligase (LigD) FY139_00670 PF04679 ATP dependent DNA ligase C terminal region FY139_00670 PF01068 ATP dependent DNA ligase domain FY139_00675 PF02735 Ku70/Ku80 beta-barrel domain FY139_00690 PF00563 EAL domain FY139_00690 PF00990 Diguanylate cyclase, GGDEF domain FY139_00690 PF13188 PAS domain FY139_00690 PF03707 Bacterial signalling protein N terminal repeat FY139_00700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_00705 PF03786 D-mannonate dehydratase (UxuA) FY139_00710 PF00392 Bacterial regulatory proteins, gntR family FY139_00710 PF07729 FCD domain FY139_00715 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00720 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00720 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_00725 PF00005 ABC transporter FY139_00725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_00730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_00730 PF00005 ABC transporter FY139_00735 PF00005 ABC transporter FY139_00735 PF03459 TOBE domain FY139_00735 PF17912 MalK OB fold domain FY139_00740 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00745 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00755 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_00755 PF01571 Aminomethyltransferase folate-binding domain FY139_00755 PF17806 Sarcosine oxidase A3 domain FY139_00755 PF08669 Glycine cleavage T-protein C-terminal barrel domain FY139_00760 PF00356 Bacterial regulatory proteins, lacI family FY139_00770 PF00580 UvrD/REP helicase N-terminal domain FY139_00770 PF13361 UvrD-like helicase C-terminal domain FY139_00775 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase FY139_00780 PF16363 GDP-mannose 4,6 dehydratase FY139_00785 PF04321 RmlD substrate binding domain FY139_00790 PF00483 Nucleotidyl transferase FY139_00805 PF05045 Rhamnan synthesis protein F FY139_00835 PF01370 NAD dependent epimerase/dehydratase family FY139_00840 PF13580 SIS domain FY139_00845 PF01501 Glycosyl transferase family 8 FY139_00845 PF00535 Glycosyl transferase family 2 FY139_00855 PF03275 UDP-galactopyranose mutase FY139_00860 PF00664 ABC transporter transmembrane region FY139_00860 PF00005 ABC transporter FY139_00870 PF03466 LysR substrate binding domain FY139_00870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_00875 PF00248 Aldo/keto reductase family FY139_00890 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FY139_00890 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FY139_00895 PF11953 Domain of unknown function (DUF3470) FY139_00895 PF00037 4Fe-4S binding domain FY139_00905 PF12852 Cupin FY139_00905 PF12833 Helix-turn-helix domain FY139_00910 PF00106 short chain dehydrogenase FY139_00915 PF03009 Glycerophosphoryl diester phosphodiesterase family FY139_00920 PF01325 Iron dependent repressor, N-terminal DNA binding domain FY139_00920 PF00480 ROK family FY139_00930 PF16220 Domain of unknown function (DUF4880) FY139_00930 PF04773 FecR protein FY139_00935 PF07715 TonB-dependent Receptor Plug Domain FY139_00935 PF00593 TonB dependent receptor FY139_00940 PF07690 Major Facilitator Superfamily FY139_00960 PF07470 Glycosyl Hydrolase Family 88 FY139_00970 PF17912 MalK OB fold domain FY139_00970 PF00005 ABC transporter FY139_00975 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00980 PF00528 Binding-protein-dependent transport system inner membrane component FY139_00985 PF00356 Bacterial regulatory proteins, lacI family FY139_00995 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_00995 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_01000 PF01261 Xylose isomerase-like TIM barrel FY139_01005 PF13407 Periplasmic binding protein domain FY139_01010 PF13407 Periplasmic binding protein domain FY139_01015 PF00356 Bacterial regulatory proteins, lacI family FY139_01020 PF02803 Thiolase, C-terminal domain FY139_01020 PF00108 Thiolase, N-terminal domain FY139_01025 PF01144 Coenzyme A transferase FY139_01030 PF01144 Coenzyme A transferase FY139_01035 PF01614 Bacterial transcriptional regulator FY139_01035 PF09339 IclR helix-turn-helix domain FY139_01045 PF01494 FAD binding domain FY139_01050 PF03466 LysR substrate binding domain FY139_01050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_01055 PF00561 alpha/beta hydrolase fold FY139_01060 PF02627 Carboxymuconolactone decarboxylase family FY139_01065 PF00775 Dioxygenase FY139_01065 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal FY139_01070 PF00775 Dioxygenase FY139_01075 PF10397 Adenylosuccinate lyase C-terminus FY139_01075 PF00206 Lyase FY139_01080 PF00528 Binding-protein-dependent transport system inner membrane component FY139_01085 PF00528 Binding-protein-dependent transport system inner membrane component FY139_01090 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY139_01095 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY139_01100 PF00005 ABC transporter FY139_01105 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FY139_01105 PF08501 Shikimate dehydrogenase substrate binding domain FY139_01110 PF01220 Dehydroquinase class II FY139_01120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FY139_01120 PF01261 Xylose isomerase-like TIM barrel FY139_01135 PF00005 ABC transporter FY139_01135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_01140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_01145 PF00528 Binding-protein-dependent transport system inner membrane component FY139_01150 PF00528 Binding-protein-dependent transport system inner membrane component FY139_01150 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_01165 PF13458 Periplasmic binding protein FY139_01180 PF00005 ABC transporter FY139_01180 PF12399 Branched-chain amino acid ATP-binding cassette transporter FY139_01185 PF00005 ABC transporter FY139_01195 PF00294 pfkB family carbohydrate kinase FY139_01200 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FY139_01200 PF00205 Thiamine pyrophosphate enzyme, central domain FY139_01200 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FY139_01205 PF01261 Xylose isomerase-like TIM barrel FY139_01210 PF04962 KduI/IolB family FY139_01215 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_01215 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_01220 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FY139_01220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FY139_01225 PF00356 Bacterial regulatory proteins, lacI family FY139_01230 PF01047 MarR family FY139_01235 PF02633 Creatinine amidohydrolase FY139_01240 PF07683 Cobalamin synthesis protein cobW C-terminal domain FY139_01240 PF02492 CobW/HypB/UreG, nucleotide-binding domain FY139_01260 PF13505 Outer membrane protein beta-barrel domain FY139_01280 PF03824 High-affinity nickel-transport protein FY139_01300 PF01081 KDPG and KHG aldolase FY139_01305 PF01928 CYTH domain FY139_01315 PF17773 UPF0176 acylphosphatase like domain FY139_01315 PF00581 Rhodanese-like domain FY139_01320 PF03707 Bacterial signalling protein N terminal repeat FY139_01320 PF13188 PAS domain FY139_01320 PF00990 Diguanylate cyclase, GGDEF domain FY139_01320 PF00563 EAL domain FY139_01325 PF03180 NLPA lipoprotein FY139_01330 PF00528 Binding-protein-dependent transport system inner membrane component FY139_01335 PF09383 NIL domain FY139_01335 PF00005 ABC transporter FY139_01340 PF00881 Nitroreductase family FY139_01345 PF00232 Glycosyl hydrolase family 1 FY139_01350 PF01261 Xylose isomerase-like TIM barrel FY139_01355 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FY139_01355 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FY139_01360 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FY139_01360 PF00356 Bacterial regulatory proteins, lacI family FY139_01370 PF07690 Major Facilitator Superfamily FY139_01375 PF13533 Biotin-lipoyl like FY139_01380 PF00440 Bacterial regulatory proteins, tetR family FY139_01385 PF03471 Transporter associated domain FY139_01385 PF03741 Integral membrane protein TerC family FY139_01390 PF02080 TrkA-C domain FY139_01390 PF03600 Citrate transporter FY139_01395 PF00749 tRNA synthetases class I (E and Q), catalytic domain FY139_01400 PF00152 tRNA synthetases class II (D, K and N) FY139_01400 PF01336 OB-fold nucleic acid binding domain FY139_01405 PF01734 Patatin-like phospholipase FY139_01415 PF01297 Zinc-uptake complex component A periplasmic FY139_01420 PF00005 ABC transporter FY139_01425 PF00950 ABC 3 transport family FY139_01430 PF00950 ABC 3 transport family FY139_01445 PF01614 Bacterial transcriptional regulator FY139_01445 PF09339 IclR helix-turn-helix domain FY139_01450 PF00923 Transaldolase/Fructose-6-phosphate aldolase FY139_01455 PF04198 Putative sugar-binding domain FY139_01455 PF13936 Helix-turn-helix domain FY139_01470 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FY139_01470 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FY139_01480 PF10576 Iron-sulfur binding domain of endonuclease III FY139_01480 PF00633 Helix-hairpin-helix motif FY139_01480 PF00730 HhH-GPD superfamily base excision DNA repair protein FY139_01495 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FY139_01495 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FY139_01500 PF13419 Haloacid dehalogenase-like hydrolase FY139_01505 PF08125 Mannitol dehydrogenase C-terminal domain FY139_01505 PF01232 Mannitol dehydrogenase Rossmann domain FY139_01515 PF00005 ABC transporter FY139_01515 PF08402 TOBE domain FY139_01520 PF00528 Binding-protein-dependent transport system inner membrane component FY139_01525 PF00528 Binding-protein-dependent transport system inner membrane component FY139_01535 PF04198 Putative sugar-binding domain FY139_01540 PF00005 ABC transporter FY139_01540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_01545 PF07687 Peptidase dimerisation domain FY139_01545 PF01546 Peptidase family M20/M25/M40 FY139_01550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_01555 PF00528 Binding-protein-dependent transport system inner membrane component FY139_01560 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_01560 PF00528 Binding-protein-dependent transport system inner membrane component FY139_01570 PF01965 DJ-1/PfpI family FY139_01575 PF01425 Amidase FY139_01580 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_01580 PF00528 Binding-protein-dependent transport system inner membrane component FY139_01585 PF00528 Binding-protein-dependent transport system inner membrane component FY139_01590 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_01595 PF03466 LysR substrate binding domain FY139_01595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_01600 PF00005 ABC transporter FY139_01600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_01605 PF00005 ABC transporter FY139_01605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_01610 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_01610 PF00528 Binding-protein-dependent transport system inner membrane component FY139_01615 PF00528 Binding-protein-dependent transport system inner membrane component FY139_01620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_01625 PF01244 Membrane dipeptidase (Peptidase family M19) FY139_01635 PF01546 Peptidase family M20/M25/M40 FY139_01635 PF07687 Peptidase dimerisation domain FY139_01640 PF07690 Major Facilitator Superfamily FY139_01645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_01645 PF03466 LysR substrate binding domain FY139_01650 PF01979 Amidohydrolase family FY139_01650 PF13382 Adenine deaminase C-terminal domain FY139_01660 PF08402 TOBE domain FY139_01660 PF00005 ABC transporter FY139_01670 PF00528 Binding-protein-dependent transport system inner membrane component FY139_01680 PF00356 Bacterial regulatory proteins, lacI family FY139_01685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_01685 PF03466 LysR substrate binding domain FY139_01690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FY139_01690 PF02770 Acyl-CoA dehydrogenase, middle domain FY139_01690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FY139_01695 PF07715 TonB-dependent Receptor Plug Domain FY139_01705 PF00296 Luciferase-like monooxygenase FY139_01710 PF00005 ABC transporter FY139_01715 PF01032 FecCD transport family FY139_01720 PF01032 FecCD transport family FY139_01730 PF04954 Siderophore-interacting protein FY139_01730 PF08021 Siderophore-interacting FAD-binding domain FY139_01740 PF00501 AMP-binding enzyme FY139_01740 PF13193 AMP-binding enzyme C-terminal domain FY139_01740 PF00668 Condensation domain FY139_01740 PF00550 Phosphopantetheine attachment site FY139_01740 PF00975 Thioesterase domain FY139_01745 PF00501 AMP-binding enzyme FY139_01745 PF00550 Phosphopantetheine attachment site FY139_01745 PF00668 Condensation domain FY139_01745 PF00975 Thioesterase domain FY139_01750 PF00501 AMP-binding enzyme FY139_01750 PF13193 AMP-binding enzyme C-terminal domain FY139_01750 PF00668 Condensation domain FY139_01750 PF00550 Phosphopantetheine attachment site FY139_01755 PF00425 chorismate binding enzyme FY139_01760 PF00501 AMP-binding enzyme FY139_01760 PF13193 AMP-binding enzyme C-terminal domain FY139_01765 PF00857 Isochorismatase family FY139_01765 PF00550 Phosphopantetheine attachment site FY139_01775 PF01648 4'-phosphopantetheinyl transferase superfamily FY139_01775 PF17837 4'-phosphopantetheinyl transferase N-terminal domain FY139_01785 PF03264 NapC/NirT cytochrome c family, N-terminal region FY139_01790 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) FY139_01795 PF00384 Molybdopterin oxidoreductase FY139_01795 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FY139_01795 PF01568 Molydopterin dinucleotide binding domain FY139_01810 PF06796 Periplasmic nitrate reductase protein NapE FY139_01820 PF00005 ABC transporter FY139_01845 PF01136 Peptidase family U32 FY139_01855 PF04343 Protein of unknown function, DUF488 FY139_01860 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase FY139_01865 PF02441 Flavoprotein FY139_01875 PF00510 Cytochrome c oxidase subunit III FY139_01885 PF00034 Cytochrome c FY139_01890 PF00115 Cytochrome C and Quinol oxidase polypeptide I FY139_01895 PF08406 CbbQ/NirQ/NorQ C-terminal FY139_01895 PF07728 AAA domain (dynein-related subfamily) FY139_01900 PF00092 von Willebrand factor type A domain FY139_01920 PF07732 Multicopper oxidase FY139_01920 PF00394 Multicopper oxidase FY139_01935 PF00034 Cytochrome c FY139_01955 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_01955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_01965 PF00356 Bacterial regulatory proteins, lacI family FY139_01970 PF02653 Branched-chain amino acid transport system / permease component FY139_01975 PF02653 Branched-chain amino acid transport system / permease component FY139_01980 PF00005 ABC transporter FY139_01985 PF13407 Periplasmic binding protein domain FY139_01995 PF03466 LysR substrate binding domain FY139_01995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_02010 PF00356 Bacterial regulatory proteins, lacI family FY139_02015 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_02015 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_02020 PF01261 Xylose isomerase-like TIM barrel FY139_02025 PF13416 Bacterial extracellular solute-binding protein FY139_02030 PF00528 Binding-protein-dependent transport system inner membrane component FY139_02035 PF00528 Binding-protein-dependent transport system inner membrane component FY139_02040 PF00005 ABC transporter FY139_02040 PF17912 MalK OB fold domain FY139_02040 PF03459 TOBE domain FY139_02055 PF03471 Transporter associated domain FY139_02055 PF03741 Integral membrane protein TerC family FY139_02060 PF00356 Bacterial regulatory proteins, lacI family FY139_02075 PF00459 Inositol monophosphatase family FY139_02080 PF03707 Bacterial signalling protein N terminal repeat FY139_02080 PF13188 PAS domain FY139_02080 PF00990 Diguanylate cyclase, GGDEF domain FY139_02080 PF00563 EAL domain FY139_02105 PF04717 Type VI secretion system, phage-baseplate injector FY139_02125 PF00004 ATPase family associated with various cellular activities (AAA) FY139_02125 PF07724 AAA domain (Cdc48 subfamily) FY139_02125 PF17871 AAA lid domain FY139_02125 PF10431 C-terminal, D2-small domain, of ClpB protein FY139_02135 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 FY139_02140 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath FY139_02160 PF05947 Type VI secretion system, TssF FY139_02175 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE FY139_02180 PF00691 OmpA family FY139_02185 PF06744 Type VI secretion protein IcmF C-terminal FY139_02185 PF06761 Intracellular multiplication and human macrophage-killing FY139_02185 PF14331 ImcF-related N-terminal domain FY139_02195 PF00069 Protein kinase domain FY139_02195 PF07238 PilZ domain FY139_02200 PF02563 Polysaccharide biosynthesis/export protein FY139_02210 PF08946 Osmosensory transporter coiled coil FY139_02210 PF00083 Sugar (and other) transporter FY139_02220 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FY139_02220 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FY139_02225 PF00106 short chain dehydrogenase FY139_02230 PF02653 Branched-chain amino acid transport system / permease component FY139_02235 PF00005 ABC transporter FY139_02240 PF13407 Periplasmic binding protein domain FY139_02245 PF12833 Helix-turn-helix domain FY139_02250 PF08240 Alcohol dehydrogenase GroES-like domain FY139_02250 PF00107 Zinc-binding dehydrogenase FY139_02265 PF00005 ABC transporter FY139_02275 PF00245 Alkaline phosphatase FY139_02280 PF00440 Bacterial regulatory proteins, tetR family FY139_02295 PF00551 Formyl transferase FY139_02300 PF00464 Serine hydroxymethyltransferase FY139_02310 PF17806 Sarcosine oxidase A3 domain FY139_02310 PF01571 Aminomethyltransferase folate-binding domain FY139_02310 PF08669 Glycine cleavage T-protein C-terminal barrel domain FY139_02310 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_02320 PF01266 FAD dependent oxidoreductase FY139_02335 PF00701 Dihydrodipicolinate synthetase family FY139_02340 PF00171 Aldehyde dehydrogenase family FY139_02345 PF01266 FAD dependent oxidoreductase FY139_02355 PF00005 ABC transporter FY139_02355 PF00571 CBS domain FY139_02360 PF00528 Binding-protein-dependent transport system inner membrane component FY139_02365 PF00528 Binding-protein-dependent transport system inner membrane component FY139_02370 PF05544 Proline racemase FY139_02375 PF03807 NADP oxidoreductase coenzyme F420-dependent FY139_02375 PF14748 Pyrroline-5-carboxylate reductase dimerisation FY139_02385 PF00970 Oxidoreductase FAD-binding domain FY139_02385 PF00111 2Fe-2S iron-sulfur cluster binding domain FY139_02385 PF00175 Oxidoreductase NAD-binding domain FY139_02390 PF00355 Rieske [2Fe-2S] domain FY139_02390 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FY139_02410 PF01638 HxlR-like helix-turn-helix FY139_02415 PF00107 Zinc-binding dehydrogenase FY139_02415 PF08240 Alcohol dehydrogenase GroES-like domain FY139_02420 PF13382 Adenine deaminase C-terminal domain FY139_02420 PF01979 Amidohydrolase family FY139_02435 PF00005 ABC transporter FY139_02460 PF07690 Major Facilitator Superfamily FY139_02470 PF01979 Amidohydrolase family FY139_02475 PF11799 impB/mucB/samB family C-terminal domain FY139_02475 PF00817 impB/mucB/samB family FY139_02495 PF17912 MalK OB fold domain FY139_02495 PF00005 ABC transporter FY139_02500 PF00528 Binding-protein-dependent transport system inner membrane component FY139_02505 PF00528 Binding-protein-dependent transport system inner membrane component FY139_02530 PF00455 DeoR C terminal sensor domain FY139_02530 PF08220 DeoR-like helix-turn-helix domain FY139_02535 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FY139_02535 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FY139_02540 PF00005 ABC transporter FY139_02545 PF02653 Branched-chain amino acid transport system / permease component FY139_02550 PF13407 Periplasmic binding protein domain FY139_02555 PF00480 ROK family FY139_02555 PF01325 Iron dependent repressor, N-terminal DNA binding domain FY139_02565 PF01177 Asp/Glu/Hydantoin racemase FY139_02570 PF00528 Binding-protein-dependent transport system inner membrane component FY139_02575 PF00528 Binding-protein-dependent transport system inner membrane component FY139_02585 PF08402 TOBE domain FY139_02585 PF00005 ABC transporter FY139_02605 PF00196 Bacterial regulatory proteins, luxR family FY139_02615 PF00672 HAMP domain FY139_02615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_02615 PF00512 His Kinase A (phospho-acceptor) domain FY139_02620 PF00072 Response regulator receiver domain FY139_02620 PF00486 Transcriptional regulatory protein, C terminal FY139_02640 PF02687 FtsX-like permease family FY139_02640 PF12704 MacB-like periplasmic core domain FY139_02640 PF00005 ABC transporter FY139_02650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_02650 PF03466 LysR substrate binding domain FY139_02660 PF00510 Cytochrome c oxidase subunit III FY139_02665 PF00510 Cytochrome c oxidase subunit III FY139_02670 PF00115 Cytochrome C and Quinol oxidase polypeptide I FY139_02675 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FY139_02680 PF00034 Cytochrome c FY139_02695 PF00890 FAD binding domain FY139_02695 PF02910 Fumarate reductase flavoprotein C-term FY139_02700 PF05199 GMC oxidoreductase FY139_02700 PF00732 GMC oxidoreductase FY139_02705 PF05199 GMC oxidoreductase FY139_02705 PF00732 GMC oxidoreductase FY139_02710 PF17912 MalK OB fold domain FY139_02710 PF03459 TOBE domain FY139_02710 PF00005 ABC transporter FY139_02715 PF00528 Binding-protein-dependent transport system inner membrane component FY139_02720 PF00528 Binding-protein-dependent transport system inner membrane component FY139_02725 PF01547 Bacterial extracellular solute-binding protein FY139_02730 PF00171 Aldehyde dehydrogenase family FY139_02735 PF00378 Enoyl-CoA hydratase/isomerase FY139_02740 PF01144 Coenzyme A transferase FY139_02745 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_02745 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_02750 PF00356 Bacterial regulatory proteins, lacI family FY139_02755 PF03928 Haem-degrading FY139_02760 PF07715 TonB-dependent Receptor Plug Domain FY139_02765 PF01497 Periplasmic binding protein FY139_02770 PF01032 FecCD transport family FY139_02775 PF01032 FecCD transport family FY139_02780 PF00005 ABC transporter FY139_02795 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FY139_02795 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FY139_02800 PF04324 BFD-like [2Fe-2S] binding domain FY139_02800 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_02805 PF01266 FAD dependent oxidoreductase FY139_02805 PF04324 BFD-like [2Fe-2S] binding domain FY139_02810 PF00528 Binding-protein-dependent transport system inner membrane component FY139_02815 PF00528 Binding-protein-dependent transport system inner membrane component FY139_02820 PF08402 TOBE domain FY139_02820 PF00005 ABC transporter FY139_02835 PF00795 Carbon-nitrogen hydrolase FY139_02840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_02840 PF03466 LysR substrate binding domain FY139_02845 PF00857 Isochorismatase family FY139_02850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_02850 PF03466 LysR substrate binding domain FY139_02860 PF03466 LysR substrate binding domain FY139_02860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_02865 PF05163 DinB family FY139_02870 PF00293 NUDIX domain FY139_02875 PF02567 Phenazine biosynthesis-like protein FY139_02890 PF00155 Aminotransferase class I and II FY139_02890 PF00392 Bacterial regulatory proteins, gntR family FY139_02900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_02900 PF03466 LysR substrate binding domain FY139_02915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_02920 PF00881 Nitroreductase family FY139_02935 PF01323 DSBA-like thioredoxin domain FY139_02940 PF01565 FAD binding domain FY139_02940 PF02913 FAD linked oxidases, C-terminal domain FY139_02945 PF00384 Molybdopterin oxidoreductase FY139_02945 PF01568 Molydopterin dinucleotide binding domain FY139_02950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_02955 PF00528 Binding-protein-dependent transport system inner membrane component FY139_02960 PF00528 Binding-protein-dependent transport system inner membrane component FY139_02960 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_02965 PF00005 ABC transporter FY139_02965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_02975 PF00296 Luciferase-like monooxygenase FY139_02980 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FY139_02985 PF03358 NADPH-dependent FMN reductase FY139_03000 PF01053 Cys/Met metabolism PLP-dependent enzyme FY139_03005 PF01037 Lrp/AsnC ligand binding domain FY139_03010 PF02733 Dak1 domain FY139_03020 PF00106 short chain dehydrogenase FY139_03025 PF02798 Glutathione S-transferase, N-terminal domain FY139_03030 PF00873 AcrB/AcrD/AcrF family FY139_03035 PF13533 Biotin-lipoyl like FY139_03040 PF00440 Bacterial regulatory proteins, tetR family FY139_03045 PF00109 Beta-ketoacyl synthase, N-terminal domain FY139_03045 PF02801 Beta-ketoacyl synthase, C-terminal domain FY139_03050 PF00091 Tubulin/FtsZ family, GTPase domain FY139_03050 PF12327 FtsZ family, C-terminal domain FY139_03065 PF01554 MatE FY139_03085 PF00753 Metallo-beta-lactamase superfamily FY139_03090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_03090 PF03466 LysR substrate binding domain FY139_03100 PF01638 HxlR-like helix-turn-helix FY139_03110 PF02687 FtsX-like permease family FY139_03110 PF12704 MacB-like periplasmic core domain FY139_03110 PF00005 ABC transporter FY139_03115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY139_03120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_03120 PF11808 Phosphate regulon sensor protein PhoR FY139_03120 PF00989 PAS fold FY139_03120 PF00512 His Kinase A (phospho-acceptor) domain FY139_03125 PF00486 Transcriptional regulatory protein, C terminal FY139_03125 PF00072 Response regulator receiver domain FY139_03145 PF03527 RHS protein FY139_03145 PF05593 RHS Repeat FY139_03165 PF04717 Type VI secretion system, phage-baseplate injector FY139_03175 PF00528 Binding-protein-dependent transport system inner membrane component FY139_03175 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_03200 PF02661 Fic/DOC family FY139_03200 PF13784 Fic/DOC family N-terminal FY139_03215 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY139_03220 PF00528 Binding-protein-dependent transport system inner membrane component FY139_03225 PF00528 Binding-protein-dependent transport system inner membrane component FY139_03250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_03255 PF00528 Binding-protein-dependent transport system inner membrane component FY139_03260 PF00528 Binding-protein-dependent transport system inner membrane component FY139_03260 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_03265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_03265 PF00005 ABC transporter FY139_03270 PF00005 ABC transporter FY139_03270 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_03280 PF00890 FAD binding domain FY139_03280 PF02910 Fumarate reductase flavoprotein C-term FY139_03290 PF13407 Periplasmic binding protein domain FY139_03295 PF00005 ABC transporter FY139_03300 PF02653 Branched-chain amino acid transport system / permease component FY139_03315 PF00248 Aldo/keto reductase family FY139_03320 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FY139_03320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FY139_03320 PF02770 Acyl-CoA dehydrogenase, middle domain FY139_03325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FY139_03325 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FY139_03335 PF00296 Luciferase-like monooxygenase FY139_03340 PF02653 Branched-chain amino acid transport system / permease component FY139_03345 PF02653 Branched-chain amino acid transport system / permease component FY139_03350 PF00005 ABC transporter FY139_03360 PF00296 Luciferase-like monooxygenase FY139_03365 PF00005 ABC transporter FY139_03365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_03370 PF00528 Binding-protein-dependent transport system inner membrane component FY139_03370 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_03375 PF00528 Binding-protein-dependent transport system inner membrane component FY139_03380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_03385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_03390 PF00296 Luciferase-like monooxygenase FY139_03400 PF00296 Luciferase-like monooxygenase FY139_03405 PF00296 Luciferase-like monooxygenase FY139_03410 PF00291 Pyridoxal-phosphate dependent enzyme FY139_03435 PF13635 Domain of unknown function (DUF4143) FY139_03435 PF13173 AAA domain FY139_03445 PF01850 PIN domain FY139_03450 PF00701 Dihydrodipicolinate synthetase family FY139_03455 PF00155 Aminotransferase class I and II FY139_03465 PF05378 Hydantoinase/oxoprolinase N-terminal region FY139_03465 PF01968 Hydantoinase/oxoprolinase FY139_03470 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY139_03475 PF00528 Binding-protein-dependent transport system inner membrane component FY139_03480 PF00528 Binding-protein-dependent transport system inner membrane component FY139_03485 PF00005 ABC transporter FY139_03495 PF07729 FCD domain FY139_03495 PF00392 Bacterial regulatory proteins, gntR family FY139_03515 PF01047 MarR family FY139_03530 PF03466 LysR substrate binding domain FY139_03530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_03535 PF00106 short chain dehydrogenase FY139_03555 PF00171 Aldehyde dehydrogenase family FY139_03560 PF08240 Alcohol dehydrogenase GroES-like domain FY139_03560 PF00107 Zinc-binding dehydrogenase FY139_03565 PF03466 LysR substrate binding domain FY139_03565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_03585 PF01810 LysE type translocator FY139_03590 PF13581 Histidine kinase-like ATPase domain FY139_03590 PF13426 PAS domain FY139_03590 PF07536 HWE histidine kinase FY139_03615 PF06628 Catalase-related immune-responsive FY139_03615 PF00199 Catalase FY139_03615 PF18011 C-terminal domain found in long catalases FY139_03635 PF00313 'Cold-shock' DNA-binding domain FY139_03665 PF00107 Zinc-binding dehydrogenase FY139_03665 PF08240 Alcohol dehydrogenase GroES-like domain FY139_03670 PF00561 alpha/beta hydrolase fold FY139_03675 PF00106 short chain dehydrogenase FY139_03680 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FY139_03685 PF00106 short chain dehydrogenase FY139_03690 PF00440 Bacterial regulatory proteins, tetR family FY139_03705 PF01810 LysE type translocator FY139_03715 PF02525 Flavodoxin-like fold FY139_03760 PF01551 Peptidase family M23 FY139_03760 PF10145 Phage-related minor tail protein FY139_03760 PF01464 Transglycosylase SLT domain FY139_03765 PF10431 C-terminal, D2-small domain, of ClpB protein FY139_03765 PF02861 Clp amino terminal domain, pathogenicity island component FY139_03765 PF07724 AAA domain (Cdc48 subfamily) FY139_03765 PF17871 AAA lid domain FY139_03765 PF00004 ATPase family associated with various cellular activities (AAA) FY139_03775 PF05175 Methyltransferase small domain FY139_03775 PF17827 PrmC N-terminal domain FY139_03780 PF03462 PCRF domain FY139_03780 PF00472 RF-1 domain FY139_03785 PF01590 GAF domain FY139_03785 PF05524 PEP-utilising enzyme, N-terminal FY139_03785 PF00391 PEP-utilising enzyme, mobile domain FY139_03785 PF02896 PEP-utilising enzyme, TIM barrel domain FY139_03790 PF00696 Amino acid kinase family FY139_03790 PF01842 ACT domain FY139_03790 PF13840 ACT domain FY139_03795 PF00270 DEAD/DEAH box helicase FY139_03795 PF00271 Helicase conserved C-terminal domain FY139_03800 PF16653 Saccharopine dehydrogenase C-terminal domain FY139_03800 PF03435 Saccharopine dehydrogenase NADP binding domain FY139_03805 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FY139_03820 PF16363 GDP-mannose 4,6 dehydratase FY139_03830 PF07536 HWE histidine kinase FY139_03830 PF13426 PAS domain FY139_03835 PF07536 HWE histidine kinase FY139_03835 PF08447 PAS fold FY139_03835 PF13426 PAS domain FY139_03840 PF00072 Response regulator receiver domain FY139_03850 PF04542 Sigma-70 region 2 FY139_03850 PF08281 Sigma-70, region 4 FY139_03855 PF01037 Lrp/AsnC ligand binding domain FY139_03860 PF18327 Proline utilization A proline dehydrogenase N-terminal domain FY139_03860 PF14850 DNA-binding domain of Proline dehydrogenase FY139_03860 PF01619 Proline dehydrogenase FY139_03860 PF00171 Aldehyde dehydrogenase family FY139_03865 PF00005 ABC transporter FY139_03870 PF00528 Binding-protein-dependent transport system inner membrane component FY139_03875 PF09084 NMT1/THI5 like FY139_03880 PF00171 Aldehyde dehydrogenase family FY139_03885 PF03466 LysR substrate binding domain FY139_03885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_03890 PF13409 Glutathione S-transferase, N-terminal domain FY139_03905 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FY139_03905 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FY139_03905 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FY139_03910 PF16363 GDP-mannose 4,6 dehydratase FY139_03915 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FY139_03915 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FY139_03935 PF01965 DJ-1/PfpI family FY139_03955 PF01266 FAD dependent oxidoreductase FY139_03955 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FY139_03965 PF05974 Domain of unknown function (DUF892) FY139_03970 PF01011 PQQ enzyme repeat FY139_03990 PF00501 AMP-binding enzyme FY139_03990 PF13193 AMP-binding enzyme C-terminal domain FY139_03995 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FY139_03995 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FY139_04000 PF00732 GMC oxidoreductase FY139_04000 PF05199 GMC oxidoreductase FY139_04005 PF02653 Branched-chain amino acid transport system / permease component FY139_04005 PF11862 Domain of unknown function (DUF3382) FY139_04010 PF02653 Branched-chain amino acid transport system / permease component FY139_04015 PF00005 ABC transporter FY139_04020 PF12399 Branched-chain amino acid ATP-binding cassette transporter FY139_04020 PF00005 ABC transporter FY139_04035 PF00296 Luciferase-like monooxygenase FY139_04040 PF13378 Enolase C-terminal domain-like FY139_04040 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FY139_04045 PF07729 FCD domain FY139_04045 PF00392 Bacterial regulatory proteins, gntR family FY139_04050 PF01232 Mannitol dehydrogenase Rossmann domain FY139_04050 PF08125 Mannitol dehydrogenase C-terminal domain FY139_04055 PF00005 ABC transporter FY139_04055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_04060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_04060 PF00005 ABC transporter FY139_04065 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_04065 PF00528 Binding-protein-dependent transport system inner membrane component FY139_04070 PF00528 Binding-protein-dependent transport system inner membrane component FY139_04075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_04080 PF00557 Metallopeptidase family M24 FY139_04080 PF01321 Creatinase/Prolidase N-terminal domain FY139_04085 PF00106 short chain dehydrogenase FY139_04115 PF00575 S1 RNA binding domain FY139_04120 PF02224 Cytidylate kinase FY139_04150 PF02445 Quinolinate synthetase A protein FY139_04155 PF02910 Fumarate reductase flavoprotein C-term FY139_04155 PF00890 FAD binding domain FY139_04160 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FY139_04160 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FY139_04180 PF08173 Membrane bound YbgT-like protein FY139_04185 PF02322 Cytochrome bd terminal oxidase subunit II FY139_04190 PF01654 Cytochrome bd terminal oxidase subunit I FY139_04195 PF00005 ABC transporter FY139_04195 PF00664 ABC transporter transmembrane region FY139_04200 PF00664 ABC transporter transmembrane region FY139_04200 PF00005 ABC transporter FY139_04210 PF00107 Zinc-binding dehydrogenase FY139_04210 PF08240 Alcohol dehydrogenase GroES-like domain FY139_04220 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FY139_04220 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FY139_04230 PF01037 Lrp/AsnC ligand binding domain FY139_04235 PF01177 Asp/Glu/Hydantoin racemase FY139_04250 PF00343 Carbohydrate phosphorylase FY139_04255 PF02806 Alpha amylase, C-terminal all-beta domain FY139_04255 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FY139_04255 PF00128 Alpha amylase, catalytic domain FY139_04260 PF00483 Nucleotidyl transferase FY139_04265 PF08323 Starch synthase catalytic domain FY139_04265 PF00534 Glycosyl transferases group 1 FY139_04270 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FY139_04270 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FY139_04270 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FY139_04270 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FY139_04275 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FY139_04275 PF18390 Glycogen debranching enzyme C-terminal domain FY139_04275 PF00128 Alpha amylase, catalytic domain FY139_04280 PF01575 MaoC like domain FY139_04305 PF08669 Glycine cleavage T-protein C-terminal barrel domain FY139_04305 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_04305 PF17806 Sarcosine oxidase A3 domain FY139_04305 PF01571 Aminomethyltransferase folate-binding domain FY139_04320 PF01266 FAD dependent oxidoreductase FY139_04325 PF01165 Ribosomal protein S21 FY139_04340 PF11089 Exopolysaccharide production repressor FY139_04345 PF00535 Glycosyl transferase family 2 FY139_04350 PF04230 Polysaccharide pyruvyl transferase FY139_04355 PF00535 Glycosyl transferase family 2 FY139_04360 PF01943 Polysaccharide biosynthesis protein FY139_04365 PF01757 Acyltransferase family FY139_04370 PF00722 Glycosyl hydrolases family 16 FY139_04380 PF00535 Glycosyl transferase family 2 FY139_04385 PF00535 Glycosyl transferase family 2 FY139_04390 PF00535 Glycosyl transferase family 2 FY139_04395 PF00483 Nucleotidyl transferase FY139_04400 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FY139_04400 PF13807 G-rich domain on putative tyrosine kinase FY139_04400 PF02706 Chain length determinant protein FY139_04405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FY139_04410 PF00072 Response regulator receiver domain FY139_04410 PF13426 PAS domain FY139_04410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_04425 PF00528 Binding-protein-dependent transport system inner membrane component FY139_04430 PF00571 CBS domain FY139_04430 PF00005 ABC transporter FY139_04435 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FY139_04435 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_04440 PF01205 Uncharacterized protein family UPF0029 FY139_04445 PF00849 RNA pseudouridylate synthase FY139_04450 PF04445 Putative SAM-dependent methyltransferase FY139_04460 PF07995 Glucose / Sorbosone dehydrogenase FY139_04470 PF00072 Response regulator receiver domain FY139_04470 PF00196 Bacterial regulatory proteins, luxR family FY139_04475 PF07730 Histidine kinase FY139_04475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_04480 PF13407 Periplasmic binding protein domain FY139_04485 PF00005 ABC transporter FY139_04490 PF02653 Branched-chain amino acid transport system / permease component FY139_04500 PF08450 SMP-30/Gluconolactonase/LRE-like region FY139_04505 PF02631 RecX family FY139_04510 PF00034 Cytochrome c FY139_04520 PF00005 ABC transporter FY139_04525 PF01032 FecCD transport family FY139_04535 PF00593 TonB dependent receptor FY139_04535 PF07715 TonB-dependent Receptor Plug Domain FY139_04540 PF03466 LysR substrate binding domain FY139_04540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_04550 PF08019 Phosphoethanolamine transferase EptA/EptB FY139_04550 PF00884 Sulfatase FY139_04555 PF00486 Transcriptional regulatory protein, C terminal FY139_04555 PF00072 Response regulator receiver domain FY139_04560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_04560 PF00512 His Kinase A (phospho-acceptor) domain FY139_04565 PF00083 Sugar (and other) transporter FY139_04570 PF07756 Protein of unknown function (DUF1612) FY139_04570 PF11972 HTH DNA binding domain FY139_04580 PF00211 Adenylate and Guanylate cyclase catalytic domain FY139_04580 PF00672 HAMP domain FY139_04590 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_04590 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_04595 PF00892 EamA-like transporter family FY139_04600 PF02423 Ornithine cyclodeaminase/mu-crystallin family FY139_04605 PF00491 Arginase family FY139_04620 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FY139_04620 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FY139_04625 PF00202 Aminotransferase class-III FY139_04635 PF00155 Aminotransferase class I and II FY139_04640 PF06968 Biotin and Thiamin Synthesis associated domain FY139_04640 PF04055 Radical SAM superfamily FY139_04645 PF13673 Acetyltransferase (GNAT) domain FY139_04690 PF01569 PAP2 superfamily FY139_04695 PF00486 Transcriptional regulatory protein, C terminal FY139_04695 PF00072 Response regulator receiver domain FY139_04700 PF00512 His Kinase A (phospho-acceptor) domain FY139_04700 PF00672 HAMP domain FY139_04700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_04710 PF07690 Major Facilitator Superfamily FY139_04715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_04715 PF03466 LysR substrate binding domain FY139_04735 PF07969 Amidohydrolase family FY139_04750 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FY139_04755 PF03466 LysR substrate binding domain FY139_04755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_04760 PF02129 X-Pro dipeptidyl-peptidase (S15 family) FY139_04770 PF07690 Major Facilitator Superfamily FY139_04775 PF03466 LysR substrate binding domain FY139_04775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_04785 PF00535 Glycosyl transferase family 2 FY139_04795 PF03275 UDP-galactopyranose mutase FY139_04805 PF00672 HAMP domain FY139_04805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_04820 PF00528 Binding-protein-dependent transport system inner membrane component FY139_04825 PF00005 ABC transporter FY139_04835 PF04303 PrpF protein FY139_04840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_04840 PF03466 LysR substrate binding domain FY139_04845 PF01047 MarR family FY139_04875 PF00440 Bacterial regulatory proteins, tetR family FY139_04880 PF12833 Helix-turn-helix domain FY139_04880 PF02311 AraC-like ligand binding domain FY139_04895 PF13533 Biotin-lipoyl like FY139_04910 PF00528 Binding-protein-dependent transport system inner membrane component FY139_04915 PF00528 Binding-protein-dependent transport system inner membrane component FY139_04920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_04925 PF00528 Binding-protein-dependent transport system inner membrane component FY139_04930 PF00528 Binding-protein-dependent transport system inner membrane component FY139_04930 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_04935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_04935 PF00005 ABC transporter FY139_04975 PF01979 Amidohydrolase family FY139_04980 PF01979 Amidohydrolase family FY139_04985 PF00221 Aromatic amino acid lyase FY139_04995 PF01175 Urocanase Rossmann-like domain FY139_04995 PF17392 Urocanase C-terminal domain FY139_04995 PF17391 Urocanase N-terminal domain FY139_05000 PF05962 HutD FY139_05005 PF07364 Metallopeptidase family M81 FY139_05005 PF07171 MlrC C-terminus FY139_05010 PF01168 Alanine racemase, N-terminal domain FY139_05010 PF14031 Putative serine dehydratase domain FY139_05015 PF01042 Endoribonuclease L-PSP FY139_05025 PF13614 AAA domain FY139_05030 PF02195 ParB-like nuclease domain FY139_05030 PF07506 RepB plasmid partitioning protein FY139_05035 PF03428 Replication protein C N-terminal domain FY139_05035 PF11800 Replication protein C C-terminal region FY139_05050 PF06772 Bacterial low temperature requirement A protein (LtrA) FY139_05055 PF00591 Glycosyl transferase family, a/b domain FY139_05055 PF02885 Glycosyl transferase family, helical bundle domain FY139_05060 PF07715 TonB-dependent Receptor Plug Domain FY139_05060 PF00593 TonB dependent receptor FY139_05065 PF00376 MerR family regulatory protein FY139_05065 PF09278 MerR, DNA binding FY139_05070 PF02806 Alpha amylase, C-terminal all-beta domain FY139_05070 PF00128 Alpha amylase, catalytic domain FY139_05075 PF00289 Biotin carboxylase, N-terminal domain FY139_05075 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FY139_05075 PF00364 Biotin-requiring enzyme FY139_05075 PF02785 Biotin carboxylase C-terminal domain FY139_05080 PF02682 Carboxyltransferase domain, subdomain C and D FY139_05085 PF07286 Protein of unknown function (DUF1445) FY139_05090 PF03746 LamB/YcsF family FY139_05095 PF01566 Natural resistance-associated macrophage protein FY139_05100 PF07729 FCD domain FY139_05100 PF00392 Bacterial regulatory proteins, gntR family FY139_05105 PF03861 ANTAR domain FY139_05105 PF08376 Nitrate and nitrite sensing FY139_05120 PF00528 Binding-protein-dependent transport system inner membrane component FY139_05125 PF00005 ABC transporter FY139_05130 PF04324 BFD-like [2Fe-2S] binding domain FY139_05130 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FY139_05130 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FY139_05130 PF18267 Rubredoxin NAD+ reductase C-terminal domain FY139_05130 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_05140 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FY139_05140 PF00384 Molybdopterin oxidoreductase FY139_05140 PF01568 Molydopterin dinucleotide binding domain FY139_05140 PF04324 BFD-like [2Fe-2S] binding domain FY139_05145 PF10414 Sirohaem synthase dimerisation region FY139_05145 PF14824 Sirohaem biosynthesis protein central FY139_05145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FY139_05150 PF00455 DeoR C terminal sensor domain FY139_05150 PF08220 DeoR-like helix-turn-helix domain FY139_05155 PF01266 FAD dependent oxidoreductase FY139_05155 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FY139_05160 PF00005 ABC transporter FY139_05160 PF17912 MalK OB fold domain FY139_05165 PF00005 ABC transporter FY139_05165 PF17912 MalK OB fold domain FY139_05170 PF00528 Binding-protein-dependent transport system inner membrane component FY139_05175 PF00528 Binding-protein-dependent transport system inner membrane component FY139_05190 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FY139_05190 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FY139_05195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_05195 PF03466 LysR substrate binding domain FY139_05200 PF13593 SBF-like CPA transporter family (DUF4137) FY139_05205 PF00011 Hsp20/alpha crystallin family FY139_05220 PF00459 Inositol monophosphatase family FY139_05230 PF00072 Response regulator receiver domain FY139_05250 PF13407 Periplasmic binding protein domain FY139_05255 PF00005 ABC transporter FY139_05260 PF02653 Branched-chain amino acid transport system / permease component FY139_05270 PF00248 Aldo/keto reductase family FY139_05275 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FY139_05275 PF01266 FAD dependent oxidoreductase FY139_05280 PF01791 DeoC/LacD family aldolase FY139_05285 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FY139_05285 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FY139_05290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_05290 PF00672 HAMP domain FY139_05295 PF03466 LysR substrate binding domain FY139_05295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_05300 PF00106 short chain dehydrogenase FY139_05300 PF00300 Histidine phosphatase superfamily (branch 1) FY139_05305 PF00155 Aminotransferase class I and II FY139_05310 PF00528 Binding-protein-dependent transport system inner membrane component FY139_05315 PF00528 Binding-protein-dependent transport system inner membrane component FY139_05325 PF00005 ABC transporter FY139_05325 PF08402 TOBE domain FY139_05330 PF03746 LamB/YcsF family FY139_05335 PF02626 Carboxyltransferase domain, subdomain A and B FY139_05340 PF02682 Carboxyltransferase domain, subdomain C and D FY139_05350 PF02785 Biotin carboxylase C-terminal domain FY139_05350 PF00289 Biotin carboxylase, N-terminal domain FY139_05350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FY139_05355 PF00364 Biotin-requiring enzyme FY139_05360 PF00892 EamA-like transporter family FY139_05365 PF00892 EamA-like transporter family FY139_05370 PF03466 LysR substrate binding domain FY139_05370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_05375 PF03401 Tripartite tricarboxylate transporter family receptor FY139_05380 PF03737 Aldolase/RraA FY139_05390 PF01970 Tripartite tricarboxylate transporter TctA family FY139_05395 PF01370 NAD dependent epimerase/dehydratase family FY139_05405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FY139_05405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FY139_05410 PF00106 short chain dehydrogenase FY139_05415 PF00528 Binding-protein-dependent transport system inner membrane component FY139_05420 PF00528 Binding-protein-dependent transport system inner membrane component FY139_05425 PF00005 ABC transporter FY139_05430 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY139_05435 PF03737 Aldolase/RraA FY139_05440 PF08240 Alcohol dehydrogenase GroES-like domain FY139_05440 PF00107 Zinc-binding dehydrogenase FY139_05455 PF01070 FMN-dependent dehydrogenase FY139_05460 PF00132 Bacterial transferase hexapeptide (six repeats) FY139_05460 PF14602 Hexapeptide repeat of succinyl-transferase FY139_05460 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal FY139_05470 PF01547 Bacterial extracellular solute-binding protein FY139_05480 PF00005 ABC transporter FY139_05480 PF17912 MalK OB fold domain FY139_05480 PF03459 TOBE domain FY139_05485 PF07470 Glycosyl Hydrolase Family 88 FY139_05490 PF00528 Binding-protein-dependent transport system inner membrane component FY139_05495 PF00528 Binding-protein-dependent transport system inner membrane component FY139_05510 PF00392 Bacterial regulatory proteins, gntR family FY139_05510 PF07729 FCD domain FY139_05515 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FY139_05515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FY139_05520 PF00005 ABC transporter FY139_05520 PF12848 ABC transporter FY139_05530 PF08379 Bacterial transglutaminase-like N-terminal region FY139_05530 PF01841 Transglutaminase-like superfamily FY139_05535 PF04168 A predicted alpha-helical domain with a conserved ER motif. FY139_05535 PF14403 Circularly permuted ATP-grasp type 2 FY139_05555 PF03061 Thioesterase superfamily FY139_05570 PF00392 Bacterial regulatory proteins, gntR family FY139_05570 PF07729 FCD domain FY139_05575 PF00465 Iron-containing alcohol dehydrogenase FY139_05580 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FY139_05590 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_05595 PF00528 Binding-protein-dependent transport system inner membrane component FY139_05600 PF00528 Binding-protein-dependent transport system inner membrane component FY139_05600 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_05605 PF00005 ABC transporter FY139_05605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_05610 PF00701 Dihydrodipicolinate synthetase family FY139_05645 PF00145 C-5 cytosine-specific DNA methylase FY139_05655 PF00239 Resolvase, N terminal domain FY139_05655 PF02796 Helix-turn-helix domain of resolvase FY139_05675 PF01261 Xylose isomerase-like TIM barrel FY139_05680 PF01261 Xylose isomerase-like TIM barrel FY139_05685 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_05685 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_05690 PF01261 Xylose isomerase-like TIM barrel FY139_05695 PF00005 ABC transporter FY139_05700 PF02653 Branched-chain amino acid transport system / permease component FY139_05710 PF00356 Bacterial regulatory proteins, lacI family FY139_05715 PF00221 Aromatic amino acid lyase FY139_05720 PF00571 CBS domain FY139_05720 PF00005 ABC transporter FY139_05725 PF00528 Binding-protein-dependent transport system inner membrane component FY139_05740 PF07702 UTRA domain FY139_05740 PF00392 Bacterial regulatory proteins, gntR family FY139_05750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY139_05750 PF00529 HlyD membrane-fusion protein of T1SS FY139_05760 PF00873 AcrB/AcrD/AcrF family FY139_05765 PF07729 FCD domain FY139_05765 PF00392 Bacterial regulatory proteins, gntR family FY139_05770 PF10415 Fumarase C C-terminus FY139_05770 PF00206 Lyase FY139_05775 PF00324 Amino acid permease FY139_05780 PF00710 Asparaginase, N-terminal FY139_05780 PF17763 Glutaminase/Asparaginase C-terminal domain FY139_05790 PF03814 Potassium-transporting ATPase A subunit FY139_05800 PF02669 K+-transporting ATPase, c chain FY139_05805 PF13493 Domain of unknown function (DUF4118) FY139_05805 PF02702 Osmosensitive K+ channel His kinase sensor domain FY139_05805 PF00512 His Kinase A (phospho-acceptor) domain FY139_05805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_05805 PF13492 GAF domain FY139_05810 PF00486 Transcriptional regulatory protein, C terminal FY139_05810 PF00072 Response regulator receiver domain FY139_05815 PF01212 Beta-eliminating lyase FY139_05820 PF01645 Conserved region in glutamate synthase FY139_05820 PF00310 Glutamine amidotransferases class-II FY139_05820 PF04898 Glutamate synthase central domain FY139_05820 PF01493 GXGXG motif FY139_05830 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_05830 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FY139_05835 PF00512 His Kinase A (phospho-acceptor) domain FY139_05835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_05835 PF00672 HAMP domain FY139_05840 PF00486 Transcriptional regulatory protein, C terminal FY139_05840 PF00072 Response regulator receiver domain FY139_05850 PF13406 Transglycosylase SLT domain FY139_05855 PF00483 Nucleotidyl transferase FY139_05870 PF00571 CBS domain FY139_05870 PF01380 SIS domain FY139_05880 PF16200 C-terminal region of band_7 FY139_05880 PF01145 SPFH domain / Band 7 family FY139_05885 PF00762 Ferrochelatase FY139_05890 PF02872 5'-nucleotidase, C-terminal domain FY139_05890 PF00149 Calcineurin-like phosphoesterase FY139_05900 PF16653 Saccharopine dehydrogenase C-terminal domain FY139_05900 PF03435 Saccharopine dehydrogenase NADP binding domain FY139_05905 PF00990 Diguanylate cyclase, GGDEF domain FY139_05910 PF01063 Amino-transferase class IV FY139_05915 PF01432 Peptidase family M3 FY139_05915 PF08439 Oligopeptidase F FY139_05920 PF00072 Response regulator receiver domain FY139_05920 PF02954 Bacterial regulatory protein, Fis family FY139_05920 PF00158 Sigma-54 interaction domain FY139_05925 PF05951 Bacterial protein of unknown function (DUF882) FY139_05930 PF02887 Pyruvate kinase, alpha/beta domain FY139_05930 PF00224 Pyruvate kinase, barrel domain FY139_05950 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) FY139_05960 PF00444 Ribosomal protein L36 FY139_05965 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain FY139_05965 PF02222 ATP-grasp domain FY139_05970 PF00731 AIR carboxylase FY139_06000 PF00459 Inositol monophosphatase family FY139_06010 PF01389 OmpA-like transmembrane domain FY139_06010 PF00691 OmpA family FY139_06015 PF00890 FAD binding domain FY139_06020 PF00664 ABC transporter transmembrane region FY139_06020 PF00005 ABC transporter FY139_06025 PF01197 Ribosomal protein L31 FY139_06045 PF00274 Fructose-bisphosphate aldolase class-I FY139_06050 PF00162 Phosphoglycerate kinase FY139_06055 PF00999 Sodium/hydrogen exchanger family FY139_06055 PF03471 Transporter associated domain FY139_06065 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FY139_06065 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FY139_06070 PF02779 Transketolase, pyrimidine binding domain FY139_06070 PF02780 Transketolase, C-terminal domain FY139_06070 PF00456 Transketolase, thiamine diphosphate binding domain FY139_06090 PF00571 CBS domain FY139_06090 PF03471 Transporter associated domain FY139_06090 PF01595 Cyclin M transmembrane N-terminal domain FY139_06100 PF13277 YmdB-like protein FY139_06115 PF01709 Transcriptional regulator FY139_06120 PF00296 Luciferase-like monooxygenase FY139_06125 PF00672 HAMP domain FY139_06125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_06130 PF02075 Crossover junction endodeoxyribonuclease RuvC FY139_06135 PF07499 RuvA, C-terminal domain FY139_06135 PF01330 RuvA N terminal domain FY139_06140 PF05496 Holliday junction DNA helicase RuvB P-loop domain FY139_06140 PF05491 RuvB C-terminal winged helix domain FY139_06140 PF17864 RuvB AAA lid domain FY139_06155 PF00293 NUDIX domain FY139_06160 PF00293 NUDIX domain FY139_06165 PF03061 Thioesterase superfamily FY139_06170 PF01618 MotA/TolQ/ExbB proton channel family FY139_06175 PF02472 Biopolymer transport protein ExbD/TolR FY139_06185 PF07676 WD40-like Beta Propeller Repeat FY139_06185 PF04052 TolB amino-terminal domain FY139_06190 PF00691 OmpA family FY139_06200 PF01171 PP-loop family FY139_06205 PF17862 AAA+ lid domain FY139_06205 PF06480 FtsH Extracellular FY139_06205 PF00004 ATPase family associated with various cellular activities (AAA) FY139_06205 PF01434 Peptidase family M41 FY139_06210 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FY139_06210 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FY139_06210 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FY139_06210 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FY139_06215 PF13505 Outer membrane protein beta-barrel domain FY139_06225 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FY139_06225 PF01842 ACT domain FY139_06225 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FY139_06260 PF00085 Thioredoxin FY139_06270 PF03966 Trm112p-like protein FY139_06275 PF07703 Alpha-2-macroglobulin bait region domain FY139_06275 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain FY139_06275 PF11974 Bacterial alpha-2-macroglobulin MG3 domain FY139_06275 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain FY139_06275 PF17962 Bacterial macroglobulin domain 6 FY139_06275 PF01835 MG2 domain FY139_06275 PF07678 A-macroglobulin TED domain FY139_06275 PF00207 Alpha-2-macroglobulin family FY139_06275 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain FY139_06280 PF06832 Penicillin-Binding Protein C-terminus Family FY139_06280 PF00912 Transglycosylase FY139_06280 PF00905 Penicillin binding protein transpeptidase domain FY139_06290 PF01546 Peptidase family M20/M25/M40 FY139_06290 PF07687 Peptidase dimerisation domain FY139_06295 PF07943 Penicillin-binding protein 5, C-terminal domain FY139_06295 PF00768 D-alanyl-D-alanine carboxypeptidase FY139_06300 PF02492 CobW/HypB/UreG, nucleotide-binding domain FY139_06300 PF07683 Cobalamin synthesis protein cobW C-terminal domain FY139_06305 PF00581 Rhodanese-like domain FY139_06305 PF01206 Sulfurtransferase TusA FY139_06310 PF03734 L,D-transpeptidase catalytic domain FY139_06315 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FY139_06320 PF00589 Phage integrase family FY139_06320 PF02899 Phage integrase, N-terminal SAM-like domain FY139_06330 PF01202 Shikimate kinase FY139_06335 PF01761 3-dehydroquinate synthase FY139_06345 PF01722 BolA-like protein FY139_06350 PF00226 DnaJ domain FY139_06355 PF12556 Cobaltochelatase CobS subunit N terminal FY139_06355 PF08406 CbbQ/NirQ/NorQ C-terminal FY139_06355 PF07728 AAA domain (dynein-related subfamily) FY139_06360 PF06213 Cobalamin biosynthesis protein CobT FY139_06360 PF11775 Cobalamin biosynthesis protein CobT VWA domain FY139_06375 PF02592 Putative vitamin uptake transporter FY139_06380 PF00830 Ribosomal L28 family FY139_06400 PF16123 Hydroxyacylglutathione hydrolase C-terminus FY139_06400 PF00753 Metallo-beta-lactamase superfamily FY139_06405 PF01209 ubiE/COQ5 methyltransferase family FY139_06410 PF00155 Aminotransferase class I and II FY139_06415 PF02153 Prephenate dehydrogenase FY139_06425 PF04752 ChaC-like protein FY139_06445 PF00005 ABC transporter FY139_06455 PF00156 Phosphoribosyl transferase domain FY139_06460 PF00072 Response regulator receiver domain FY139_06470 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FY139_06470 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FY139_06480 PF00206 Lyase FY139_06480 PF14698 Argininosuccinate lyase C-terminal FY139_06485 PF08534 Redoxin FY139_06495 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FY139_06495 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FY139_06500 PF00766 Electron transfer flavoprotein FAD-binding domain FY139_06500 PF01012 Electron transfer flavoprotein domain FY139_06505 PF01012 Electron transfer flavoprotein domain FY139_06515 PF01923 Cobalamin adenosyltransferase FY139_06525 PF00106 short chain dehydrogenase FY139_06535 PF00749 tRNA synthetases class I (E and Q), catalytic domain FY139_06540 PF02805 Metal binding domain of Ada FY139_06540 PF06029 AlkA N-terminal domain FY139_06540 PF00730 HhH-GPD superfamily base excision DNA repair protein FY139_06540 PF12833 Helix-turn-helix domain FY139_06545 PF06114 IrrE N-terminal-like domain FY139_06545 PF09856 Predicted transcriptional regulator (DUF2083) FY139_06545 PF01381 Helix-turn-helix FY139_06550 PF01039 Carboxyl transferase domain FY139_06555 PF02798 Glutathione S-transferase, N-terminal domain FY139_06570 PF02785 Biotin carboxylase C-terminal domain FY139_06570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FY139_06570 PF00289 Biotin carboxylase, N-terminal domain FY139_06570 PF18140 Propionyl-coenzyme A carboxylase BT domain FY139_06570 PF00364 Biotin-requiring enzyme FY139_06575 PF02310 B12 binding domain FY139_06575 PF01642 Methylmalonyl-CoA mutase FY139_06585 PF01266 FAD dependent oxidoreductase FY139_06585 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FY139_06595 PF13407 Periplasmic binding protein domain FY139_06600 PF02653 Branched-chain amino acid transport system / permease component FY139_06605 PF00005 ABC transporter FY139_06610 PF01717 Cobalamin-independent synthase, Catalytic domain FY139_06610 PF08267 Cobalamin-independent synthase, N-terminal domain FY139_06620 PF01381 Helix-turn-helix FY139_06635 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding FY139_06660 PF01047 MarR family FY139_06660 PF00480 ROK family FY139_06670 PF00528 Binding-protein-dependent transport system inner membrane component FY139_06675 PF00528 Binding-protein-dependent transport system inner membrane component FY139_06680 PF17912 MalK OB fold domain FY139_06680 PF03459 TOBE domain FY139_06680 PF00005 ABC transporter FY139_06685 PF03009 Glycerophosphoryl diester phosphodiesterase family FY139_06695 PF00722 Glycosyl hydrolases family 16 FY139_06695 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) FY139_06700 PF01272 Transcription elongation factor, GreA/GreB, C-term FY139_06700 PF03449 Transcription elongation factor, N-terminal FY139_06715 PF00534 Glycosyl transferases group 1 FY139_06715 PF13439 Glycosyltransferase Family 4 FY139_06720 PF13439 Glycosyltransferase Family 4 FY139_06720 PF00534 Glycosyl transferases group 1 FY139_06740 PF13807 G-rich domain on putative tyrosine kinase FY139_06740 PF02706 Chain length determinant protein FY139_06740 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FY139_06750 PF01757 Acyltransferase family FY139_06765 PF01943 Polysaccharide biosynthesis protein FY139_06825 PF01757 Acyltransferase family FY139_06830 PF00892 EamA-like transporter family FY139_06835 PF07516 SecA Wing and Scaffold domain FY139_06835 PF01043 SecA preprotein cross-linking domain FY139_06835 PF07517 SecA DEAD-like domain FY139_06835 PF02810 SEC-C motif FY139_06845 PF01960 ArgJ family FY139_06850 PF00583 Acetyltransferase (GNAT) family FY139_06850 PF13508 Acetyltransferase (GNAT) domain FY139_06855 PF00293 NUDIX domain FY139_06870 PF08241 Methyltransferase domain FY139_06880 PF00462 Glutaredoxin FY139_06885 PF00795 Carbon-nitrogen hydrolase FY139_06895 PF08241 Methyltransferase domain FY139_06910 PF00378 Enoyl-CoA hydratase/isomerase FY139_06920 PF00528 Binding-protein-dependent transport system inner membrane component FY139_06925 PF00528 Binding-protein-dependent transport system inner membrane component FY139_06930 PF00005 ABC transporter FY139_06935 PF08713 DNA alkylation repair enzyme FY139_06940 PF00171 Aldehyde dehydrogenase family FY139_06950 PF08447 PAS fold FY139_06950 PF00990 Diguanylate cyclase, GGDEF domain FY139_06950 PF00563 EAL domain FY139_06950 PF08448 PAS fold FY139_06960 PF00561 alpha/beta hydrolase fold FY139_06970 PF05336 L-rhamnose mutarotase FY139_06975 PF02653 Branched-chain amino acid transport system / permease component FY139_06980 PF02653 Branched-chain amino acid transport system / permease component FY139_06985 PF00005 ABC transporter FY139_06990 PF13407 Periplasmic binding protein domain FY139_06995 PF08220 DeoR-like helix-turn-helix domain FY139_06995 PF00455 DeoR C terminal sensor domain FY139_07000 PF00596 Class II Aldolase and Adducin N-terminal domain FY139_07005 PF01261 Xylose isomerase-like TIM barrel FY139_07010 PF02548 Ketopantoate hydroxymethyltransferase FY139_07015 PF02569 Pantoate-beta-alanine ligase FY139_07025 PF00682 HMGL-like FY139_07030 PF00364 Biotin-requiring enzyme FY139_07030 PF00289 Biotin carboxylase, N-terminal domain FY139_07030 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FY139_07030 PF02785 Biotin carboxylase C-terminal domain FY139_07035 PF01039 Carboxyl transferase domain FY139_07040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FY139_07040 PF02770 Acyl-CoA dehydrogenase, middle domain FY139_07040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FY139_07045 PF01037 Lrp/AsnC ligand binding domain FY139_07050 PF00108 Thiolase, N-terminal domain FY139_07050 PF02803 Thiolase, C-terminal domain FY139_07055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FY139_07055 PF02770 Acyl-CoA dehydrogenase, middle domain FY139_07055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FY139_07060 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal FY139_07060 PF00676 Dehydrogenase E1 component FY139_07065 PF02780 Transketolase, C-terminal domain FY139_07065 PF02779 Transketolase, pyrimidine binding domain FY139_07070 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FY139_07070 PF00364 Biotin-requiring enzyme FY139_07070 PF02817 e3 binding domain FY139_07075 PF01676 Metalloenzyme superfamily FY139_07075 PF06415 BPG-independent PGAM N-terminus (iPGM_N) FY139_07085 PF04143 Sulphur transport FY139_07095 PF04273 Putative phosphatase (DUF442) FY139_07095 PF00753 Metallo-beta-lactamase superfamily FY139_07105 PF00106 short chain dehydrogenase FY139_07110 PF00561 alpha/beta hydrolase fold FY139_07120 PF00392 Bacterial regulatory proteins, gntR family FY139_07120 PF07729 FCD domain FY139_07130 PF00528 Binding-protein-dependent transport system inner membrane component FY139_07135 PF00528 Binding-protein-dependent transport system inner membrane component FY139_07135 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_07140 PF00005 ABC transporter FY139_07140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_07145 PF00005 ABC transporter FY139_07145 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_07275 PF04233 Phage Mu protein F like protein FY139_07280 PF06074 Protein of unknown function (DUF935) FY139_07285 PF03237 Terminase-like family FY139_07405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_07415 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FY139_07415 PF13378 Enolase C-terminal domain-like FY139_07420 PF00106 short chain dehydrogenase FY139_07425 PF01638 HxlR-like helix-turn-helix FY139_07435 PF00296 Luciferase-like monooxygenase FY139_07440 PF00296 Luciferase-like monooxygenase FY139_07450 PF05368 NmrA-like family FY139_07455 PF00296 Luciferase-like monooxygenase FY139_07460 PF07687 Peptidase dimerisation domain FY139_07460 PF01546 Peptidase family M20/M25/M40 FY139_07465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_07480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_07485 PF00296 Luciferase-like monooxygenase FY139_07490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_07490 PF03466 LysR substrate binding domain FY139_07500 PF00248 Aldo/keto reductase family FY139_07505 PF00005 ABC transporter FY139_07505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_07510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_07510 PF00005 ABC transporter FY139_07515 PF00528 Binding-protein-dependent transport system inner membrane component FY139_07520 PF00528 Binding-protein-dependent transport system inner membrane component FY139_07525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_07535 PF02770 Acyl-CoA dehydrogenase, middle domain FY139_07535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FY139_07535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FY139_07540 PF00296 Luciferase-like monooxygenase FY139_07550 PF00581 Rhodanese-like domain FY139_07565 PF00296 Luciferase-like monooxygenase FY139_07570 PF01613 Flavin reductase like domain FY139_07580 PF02082 Transcriptional regulator FY139_07585 PF00296 Luciferase-like monooxygenase FY139_07590 PF00296 Luciferase-like monooxygenase FY139_07595 PF01546 Peptidase family M20/M25/M40 FY139_07595 PF07687 Peptidase dimerisation domain FY139_07605 PF00005 ABC transporter FY139_07610 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY139_07620 PF03466 LysR substrate binding domain FY139_07620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_07630 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_07630 PF04324 BFD-like [2Fe-2S] binding domain FY139_07635 PF01266 FAD dependent oxidoreductase FY139_07640 PF01266 FAD dependent oxidoreductase FY139_07645 PF01037 Lrp/AsnC ligand binding domain FY139_07650 PF00005 ABC transporter FY139_07650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_07655 PF00528 Binding-protein-dependent transport system inner membrane component FY139_07655 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_07660 PF00528 Binding-protein-dependent transport system inner membrane component FY139_07665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_07675 PF00202 Aminotransferase class-III FY139_07690 PF01266 FAD dependent oxidoreductase FY139_07695 PF00171 Aldehyde dehydrogenase family FY139_07700 PF00180 Isocitrate/isopropylmalate dehydrogenase FY139_07705 PF00171 Aldehyde dehydrogenase family FY139_07715 PF05378 Hydantoinase/oxoprolinase N-terminal region FY139_07715 PF01968 Hydantoinase/oxoprolinase FY139_07730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FY139_07735 PF07687 Peptidase dimerisation domain FY139_07735 PF01546 Peptidase family M20/M25/M40 FY139_07750 PF01032 FecCD transport family FY139_07755 PF00005 ABC transporter FY139_07760 PF00127 Copper binding proteins, plastocyanin/azurin family FY139_07765 PF01209 ubiE/COQ5 methyltransferase family FY139_07780 PF01032 FecCD transport family FY139_07785 PF00005 ABC transporter FY139_07790 PF04542 Sigma-70 region 2 FY139_07790 PF08281 Sigma-70, region 4 FY139_07790 PF12680 SnoaL-like domain FY139_07810 PF00664 ABC transporter transmembrane region FY139_07810 PF00005 ABC transporter FY139_07815 PF00529 HlyD membrane-fusion protein of T1SS FY139_07815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY139_07825 PF00392 Bacterial regulatory proteins, gntR family FY139_07825 PF07729 FCD domain FY139_07830 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_07830 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_07835 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_07835 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_07840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_07840 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_07850 PF00528 Binding-protein-dependent transport system inner membrane component FY139_07855 PF00528 Binding-protein-dependent transport system inner membrane component FY139_07860 PF03459 TOBE domain FY139_07860 PF00005 ABC transporter FY139_07860 PF17912 MalK OB fold domain FY139_07865 PF00920 Dehydratase family FY139_07870 PF01370 NAD dependent epimerase/dehydratase family FY139_07875 PF03737 Aldolase/RraA FY139_07880 PF00072 Response regulator receiver domain FY139_07880 PF00196 Bacterial regulatory proteins, luxR family FY139_07885 PF00528 Binding-protein-dependent transport system inner membrane component FY139_07890 PF00528 Binding-protein-dependent transport system inner membrane component FY139_07890 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_07895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_07895 PF00005 ABC transporter FY139_07910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_07925 PF01112 Asparaginase FY139_07930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_07930 PF03466 LysR substrate binding domain FY139_07935 PF00528 Binding-protein-dependent transport system inner membrane component FY139_07940 PF00528 Binding-protein-dependent transport system inner membrane component FY139_07940 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_07945 PF00005 ABC transporter FY139_07945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_07955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_07960 PF01546 Peptidase family M20/M25/M40 FY139_07970 PF13407 Periplasmic binding protein domain FY139_07975 PF00005 ABC transporter FY139_07980 PF02653 Branched-chain amino acid transport system / permease component FY139_07985 PF07722 Peptidase C26 FY139_07990 PF03480 Bacterial extracellular solute-binding protein, family 7 FY139_07995 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FY139_08000 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component FY139_08015 PF01266 FAD dependent oxidoreductase FY139_08020 PF08447 PAS fold FY139_08020 PF13426 PAS domain FY139_08020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_08025 PF00296 Luciferase-like monooxygenase FY139_08030 PF03972 MmgE/PrpD family FY139_08035 PF00005 ABC transporter FY139_08040 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08045 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08050 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY139_08055 PF03949 Malic enzyme, NAD binding domain FY139_08055 PF00390 Malic enzyme, N-terminal domain FY139_08055 PF01515 Phosphate acetyl/butaryl transferase FY139_08060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_08060 PF03466 LysR substrate binding domain FY139_08065 PF01011 PQQ enzyme repeat FY139_08070 PF00483 Nucleotidyl transferase FY139_08070 PF01050 Mannose-6-phosphate isomerase FY139_08080 PF01547 Bacterial extracellular solute-binding protein FY139_08085 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08090 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08095 PF00005 ABC transporter FY139_08095 PF17912 MalK OB fold domain FY139_08105 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_08105 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_08110 PF06508 Queuosine biosynthesis protein QueC FY139_08115 PF01242 6-pyruvoyl tetrahydropterin synthase FY139_08120 PF04055 Radical SAM superfamily FY139_08125 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_08125 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_08135 PF00005 ABC transporter FY139_08135 PF17912 MalK OB fold domain FY139_08135 PF03459 TOBE domain FY139_08140 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08145 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08150 PF01547 Bacterial extracellular solute-binding protein FY139_08155 PF00356 Bacterial regulatory proteins, lacI family FY139_08170 PF02245 Methylpurine-DNA glycosylase (MPG) FY139_08190 PF03734 L,D-transpeptidase catalytic domain FY139_08190 PF17969 L,D-transpeptidase C-terminal domain FY139_08195 PF00672 HAMP domain FY139_08195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_08200 PF00202 Aminotransferase class-III FY139_08210 PF02397 Bacterial sugar transferase FY139_08215 PF02563 Polysaccharide biosynthesis/export protein FY139_08230 PF00529 HlyD membrane-fusion protein of T1SS FY139_08235 PF00005 ABC transporter FY139_08235 PF00664 ABC transporter transmembrane region FY139_08250 PF00072 Response regulator receiver domain FY139_08250 PF00196 Bacterial regulatory proteins, luxR family FY139_08260 PF01370 NAD dependent epimerase/dehydratase family FY139_08265 PF16363 GDP-mannose 4,6 dehydratase FY139_08295 PF00535 Glycosyl transferase family 2 FY139_08295 PF07238 PilZ domain FY139_08295 PF03552 Cellulose synthase FY139_08305 PF01270 Glycosyl hydrolases family 8 FY139_08315 PF07687 Peptidase dimerisation domain FY139_08315 PF01546 Peptidase family M20/M25/M40 FY139_08330 PF00202 Aminotransferase class-III FY139_08335 PF00375 Sodium:dicarboxylate symporter family FY139_08340 PF02743 Cache domain FY139_08340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_08340 PF00512 His Kinase A (phospho-acceptor) domain FY139_08345 PF00158 Sigma-54 interaction domain FY139_08345 PF00072 Response regulator receiver domain FY139_08345 PF02954 Bacterial regulatory protein, Fis family FY139_08360 PF01266 FAD dependent oxidoreductase FY139_08365 PF00842 Alanine racemase, C-terminal domain FY139_08365 PF01168 Alanine racemase, N-terminal domain FY139_08370 PF01037 Lrp/AsnC ligand binding domain FY139_08375 PF08543 Phosphomethylpyrimidine kinase FY139_08380 PF02581 Thiamine monophosphate synthase FY139_08385 PF02110 Hydroxyethylthiazole kinase family FY139_08390 PF09084 NMT1/THI5 like FY139_08395 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08405 PF01055 Glycosyl hydrolases family 31 FY139_08410 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08415 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08420 PF01547 Bacterial extracellular solute-binding protein FY139_08425 PF00005 ABC transporter FY139_08425 PF08402 TOBE domain FY139_08430 PF07702 UTRA domain FY139_08430 PF00392 Bacterial regulatory proteins, gntR family FY139_08435 PF00296 Luciferase-like monooxygenase FY139_08440 PF00248 Aldo/keto reductase family FY139_08445 PF01613 Flavin reductase like domain FY139_08460 PF00873 AcrB/AcrD/AcrF family FY139_08465 PF13533 Biotin-lipoyl like FY139_08470 PF02563 Polysaccharide biosynthesis/export protein FY139_08475 PF13439 Glycosyltransferase Family 4 FY139_08475 PF00534 Glycosyl transferases group 1 FY139_08480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_08485 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08490 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08490 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_08495 PF01979 Amidohydrolase family FY139_08510 PF03841 L-seryl-tRNA selenium transferase FY139_08515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_08515 PF00005 ABC transporter FY139_08520 PF02798 Glutathione S-transferase, N-terminal domain FY139_08520 PF00043 Glutathione S-transferase, C-terminal domain FY139_08535 PF00296 Luciferase-like monooxygenase FY139_08540 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FY139_08540 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component FY139_08545 PF03480 Bacterial extracellular solute-binding protein, family 7 FY139_08555 PF00171 Aldehyde dehydrogenase family FY139_08565 PF03786 D-mannonate dehydratase (UxuA) FY139_08570 PF08240 Alcohol dehydrogenase GroES-like domain FY139_08570 PF00107 Zinc-binding dehydrogenase FY139_08575 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FY139_08585 PF03480 Bacterial extracellular solute-binding protein, family 7 FY139_08590 PF07729 FCD domain FY139_08590 PF00392 Bacterial regulatory proteins, gntR family FY139_08595 PF13419 Haloacid dehalogenase-like hydrolase FY139_08600 PF03775 Septum formation inhibitor MinC, C-terminal domain FY139_08600 PF05209 Septum formation inhibitor MinC, N-terminal domain FY139_08605 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FY139_08610 PF03776 Septum formation topological specificity factor MinE FY139_08615 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY139_08625 PF00563 EAL domain FY139_08625 PF08448 PAS fold FY139_08625 PF00990 Diguanylate cyclase, GGDEF domain FY139_08625 PF08447 PAS fold FY139_08630 PF01425 Amidase FY139_08640 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_08650 PF01547 Bacterial extracellular solute-binding protein FY139_08655 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08660 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08665 PF00005 ABC transporter FY139_08665 PF03459 TOBE domain FY139_08665 PF17912 MalK OB fold domain FY139_08675 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_08675 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_08685 PF05161 MOFRL family FY139_08685 PF13660 Domain of unknown function (DUF4147) FY139_08705 PF01336 OB-fold nucleic acid binding domain FY139_08705 PF14579 Helix-hairpin-helix motif FY139_08705 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FY139_08705 PF07733 Bacterial DNA polymerase III alpha NTPase domain FY139_08705 PF02811 PHP domain FY139_08710 PF13847 Methyltransferase domain FY139_08720 PF07690 Major Facilitator Superfamily FY139_08725 PF07729 FCD domain FY139_08725 PF00392 Bacterial regulatory proteins, gntR family FY139_08730 PF02653 Branched-chain amino acid transport system / permease component FY139_08735 PF02653 Branched-chain amino acid transport system / permease component FY139_08740 PF00005 ABC transporter FY139_08745 PF13407 Periplasmic binding protein domain FY139_08750 PF00920 Dehydratase family FY139_08760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FY139_08765 PF12833 Helix-turn-helix domain FY139_08775 PF00266 Aminotransferase class-V FY139_08780 PF00005 ABC transporter FY139_08780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_08785 PF00005 ABC transporter FY139_08785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_08790 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08795 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_08805 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FY139_08805 PF17854 FtsK alpha domain FY139_08805 PF09397 Ftsk gamma domain FY139_08805 PF01580 FtsK/SpoIIIE family FY139_08810 PF02615 Malate/L-lactate dehydrogenase FY139_08815 PF00563 EAL domain FY139_08815 PF08447 PAS fold FY139_08815 PF08448 PAS fold FY139_08815 PF00990 Diguanylate cyclase, GGDEF domain FY139_08825 PF07883 Cupin domain FY139_08825 PF05899 Protein of unknown function (DUF861) FY139_08830 PF17151 Periplasmic sensor domain FY139_08830 PF00990 Diguanylate cyclase, GGDEF domain FY139_08835 PF00529 HlyD membrane-fusion protein of T1SS FY139_08835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY139_08840 PF00873 AcrB/AcrD/AcrF family FY139_08845 PF00440 Bacterial regulatory proteins, tetR family FY139_08845 PF08361 MAATS-type transcriptional repressor, C-terminal region FY139_08850 PF00005 ABC transporter FY139_08855 PF02653 Branched-chain amino acid transport system / permease component FY139_08860 PF13407 Periplasmic binding protein domain FY139_08865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_08865 PF03466 LysR substrate binding domain FY139_08870 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FY139_08870 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FY139_08890 PF03922 OmpW family FY139_08900 PF08402 TOBE domain FY139_08900 PF00005 ABC transporter FY139_08905 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08910 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08915 PF13416 Bacterial extracellular solute-binding protein FY139_08920 PF07683 Cobalamin synthesis protein cobW C-terminal domain FY139_08920 PF02492 CobW/HypB/UreG, nucleotide-binding domain FY139_08935 PF07683 Cobalamin synthesis protein cobW C-terminal domain FY139_08935 PF02492 CobW/HypB/UreG, nucleotide-binding domain FY139_08940 PF00005 ABC transporter FY139_08945 PF00950 ABC 3 transport family FY139_08950 PF01297 Zinc-uptake complex component A periplasmic FY139_08955 PF00583 Acetyltransferase (GNAT) family FY139_08970 PF01053 Cys/Met metabolism PLP-dependent enzyme FY139_08975 PF01547 Bacterial extracellular solute-binding protein FY139_08980 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08985 PF00528 Binding-protein-dependent transport system inner membrane component FY139_08990 PF17912 MalK OB fold domain FY139_08990 PF00005 ABC transporter FY139_08995 PF00005 ABC transporter FY139_08995 PF08402 TOBE domain FY139_09000 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09005 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09010 PF08013 Tagatose 6 phosphate kinase FY139_09015 PF00294 pfkB family carbohydrate kinase FY139_09030 PF08240 Alcohol dehydrogenase GroES-like domain FY139_09030 PF16912 Glucose dehydrogenase C-terminus FY139_09035 PF00356 Bacterial regulatory proteins, lacI family FY139_09040 PF07690 Major Facilitator Superfamily FY139_09045 PF12833 Helix-turn-helix domain FY139_09045 PF02311 AraC-like ligand binding domain FY139_09060 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09065 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09070 PF17912 MalK OB fold domain FY139_09070 PF00005 ABC transporter FY139_09075 PF00248 Aldo/keto reductase family FY139_09090 PF00392 Bacterial regulatory proteins, gntR family FY139_09090 PF07729 FCD domain FY139_09095 PF01370 NAD dependent epimerase/dehydratase family FY139_09100 PF04962 KduI/IolB family FY139_09110 PF00701 Dihydrodipicolinate synthetase family FY139_09115 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FY139_09115 PF13378 Enolase C-terminal domain-like FY139_09120 PF04909 Amidohydrolase FY139_09125 PF02311 AraC-like ligand binding domain FY139_09125 PF12833 Helix-turn-helix domain FY139_09130 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09135 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09140 PF00005 ABC transporter FY139_09140 PF08402 TOBE domain FY139_09150 PF00295 Glycosyl hydrolases family 28 FY139_09155 PF07470 Glycosyl Hydrolase Family 88 FY139_09160 PF00550 Phosphopantetheine attachment site FY139_09180 PF01165 Ribosomal protein S21 FY139_09190 PF00313 'Cold-shock' DNA-binding domain FY139_09195 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_09195 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_09210 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_09210 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_09215 PF17938 Tetracyclin repressor-like, C-terminal domain FY139_09215 PF00440 Bacterial regulatory proteins, tetR family FY139_09220 PF13416 Bacterial extracellular solute-binding protein FY139_09225 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09230 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09235 PF00005 ABC transporter FY139_09235 PF03459 TOBE domain FY139_09235 PF17912 MalK OB fold domain FY139_09240 PF01261 Xylose isomerase-like TIM barrel FY139_09245 PF01842 ACT domain FY139_09245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FY139_09245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FY139_09255 PF00356 Bacterial regulatory proteins, lacI family FY139_09270 PF06964 Alpha-L-arabinofuranosidase C-terminal domain FY139_09275 PF00005 ABC transporter FY139_09275 PF17912 MalK OB fold domain FY139_09285 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09290 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09295 PF00005 ABC transporter FY139_09300 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09305 PF09084 NMT1/THI5 like FY139_09310 PF00296 Luciferase-like monooxygenase FY139_09320 PF00005 ABC transporter FY139_09320 PF17912 MalK OB fold domain FY139_09325 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09330 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09335 PF13416 Bacterial extracellular solute-binding protein FY139_09345 PF13426 PAS domain FY139_09345 PF08447 PAS fold FY139_09345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_09370 PF00005 ABC transporter FY139_09370 PF08402 TOBE domain FY139_09380 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09385 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09390 PF01177 Asp/Glu/Hydantoin racemase FY139_09430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_09430 PF03466 LysR substrate binding domain FY139_09435 PF00144 Beta-lactamase FY139_09445 PF00860 Permease family FY139_09455 PF07690 Major Facilitator Superfamily FY139_09460 PF00989 PAS fold FY139_09460 PF00512 His Kinase A (phospho-acceptor) domain FY139_09460 PF16736 Single Cache-like FY139_09460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_09465 PF00072 Response regulator receiver domain FY139_09465 PF00486 Transcriptional regulatory protein, C terminal FY139_09470 PF00529 HlyD membrane-fusion protein of T1SS FY139_09470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY139_09475 PF00873 AcrB/AcrD/AcrF family FY139_09480 PF13460 NAD(P)H-binding FY139_09490 PF01494 FAD binding domain FY139_09495 PF02308 MgtC family FY139_09505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY139_09510 PF00873 AcrB/AcrD/AcrF family FY139_09515 PF13520 Amino acid permease FY139_09520 PF13520 Amino acid permease FY139_09535 PF01594 AI-2E family transporter FY139_09560 PF01037 Lrp/AsnC ligand binding domain FY139_09585 PF13193 AMP-binding enzyme C-terminal domain FY139_09585 PF00501 AMP-binding enzyme FY139_09595 PF09339 IclR helix-turn-helix domain FY139_09595 PF01614 Bacterial transcriptional regulator FY139_09605 PF03480 Bacterial extracellular solute-binding protein, family 7 FY139_09605 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component FY139_09610 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FY139_09615 PF04199 Putative cyclase FY139_09620 PF01494 FAD binding domain FY139_09635 PF00196 Bacterial regulatory proteins, luxR family FY139_09635 PF00072 Response regulator receiver domain FY139_09640 PF00196 Bacterial regulatory proteins, luxR family FY139_09640 PF00072 Response regulator receiver domain FY139_09645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_09645 PF00512 His Kinase A (phospho-acceptor) domain FY139_09645 PF08448 PAS fold FY139_09645 PF00072 Response regulator receiver domain FY139_09645 PF13426 PAS domain FY139_09650 PF00384 Molybdopterin oxidoreductase FY139_09655 PF00210 Ferritin-like domain FY139_09660 PF00561 alpha/beta hydrolase fold FY139_09670 PF06441 Epoxide hydrolase N terminus FY139_09675 PF00171 Aldehyde dehydrogenase family FY139_09680 PF02566 OsmC-like protein FY139_09685 PF00672 HAMP domain FY139_09685 PF00512 His Kinase A (phospho-acceptor) domain FY139_09685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_09690 PF00486 Transcriptional regulatory protein, C terminal FY139_09690 PF00072 Response regulator receiver domain FY139_09695 PF00561 alpha/beta hydrolase fold FY139_09705 PF00578 AhpC/TSA family FY139_09705 PF02683 Cytochrome C biogenesis protein transmembrane region FY139_09705 PF17991 Thioredoxin like C-terminal domain FY139_09715 PF07690 Major Facilitator Superfamily FY139_09720 PF00990 Diguanylate cyclase, GGDEF domain FY139_09730 PF00005 ABC transporter FY139_09730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_09740 PF00106 short chain dehydrogenase FY139_09740 PF00300 Histidine phosphatase superfamily (branch 1) FY139_09745 PF01266 FAD dependent oxidoreductase FY139_09750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_09755 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09760 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_09760 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09765 PF01266 FAD dependent oxidoreductase FY139_09775 PF13649 Methyltransferase domain FY139_09780 PF00999 Sodium/hydrogen exchanger family FY139_09785 PF05985 Ethanolamine ammonia-lyase light chain (EutC) FY139_09790 PF06751 Ethanolamine ammonia lyase large subunit (EutB) FY139_09795 PF00459 Inositol monophosphatase family FY139_09810 PF01546 Peptidase family M20/M25/M40 FY139_09815 PF08220 DeoR-like helix-turn-helix domain FY139_09815 PF00455 DeoR C terminal sensor domain FY139_09820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_09820 PF00005 ABC transporter FY139_09825 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_09825 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09830 PF00528 Binding-protein-dependent transport system inner membrane component FY139_09835 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_09840 PF00465 Iron-containing alcohol dehydrogenase FY139_09845 PF00795 Carbon-nitrogen hydrolase FY139_09850 PF09383 NIL domain FY139_09850 PF00005 ABC transporter FY139_09855 PF12399 Branched-chain amino acid ATP-binding cassette transporter FY139_09855 PF00005 ABC transporter FY139_09860 PF02653 Branched-chain amino acid transport system / permease component FY139_09865 PF02653 Branched-chain amino acid transport system / permease component FY139_09870 PF13458 Periplasmic binding protein FY139_09890 PF00313 'Cold-shock' DNA-binding domain FY139_09920 PF13289 SIR2-like domain FY139_09930 PF11638 DnaA N-terminal domain FY139_09930 PF08299 Bacterial dnaA protein helix-turn-helix FY139_09930 PF00308 Bacterial dnaA protein FY139_09935 PF04055 Radical SAM superfamily FY139_09935 PF06969 HemN C-terminal domain FY139_09940 PF01725 Ham1 family FY139_09945 PF03725 3' exoribonuclease family, domain 2 FY139_09945 PF01138 3' exoribonuclease family, domain 1 FY139_09950 PF01628 HrcA protein C terminal domain FY139_09955 PF01025 GrpE FY139_09960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FY139_09965 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus FY139_09965 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FY139_09970 PF04963 Sigma-54 factor, core binding domain FY139_09970 PF04552 Sigma-54, DNA binding domain FY139_09970 PF00309 Sigma-54 factor, Activator interacting domain (AID) FY139_09975 PF00005 ABC transporter FY139_09980 PF03968 OstA-like protein FY139_09990 PF01343 Peptidase family S49 FY139_09995 PF00216 Bacterial DNA-binding protein FY139_10005 PF17785 PUA-like domain FY139_10005 PF10672 S-adenosylmethionine-dependent methyltransferase FY139_10010 PF00588 SpoU rRNA Methylase family FY139_10010 PF08032 RNA 2'-O ribose methyltransferase substrate binding FY139_10015 PF01252 Signal peptidase (SPase) II FY139_10020 PF00512 His Kinase A (phospho-acceptor) domain FY139_10020 PF00672 HAMP domain FY139_10020 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY139_10020 PF00072 Response regulator receiver domain FY139_10020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_10020 PF01627 Hpt domain FY139_10030 PF05190 MutS family domain IV FY139_10030 PF05192 MutS domain III FY139_10030 PF05188 MutS domain II FY139_10030 PF01624 MutS domain I FY139_10030 PF00488 MutS domain V FY139_10035 PF01909 Nucleotidyltransferase domain FY139_10035 PF01966 HD domain FY139_10035 PF08335 GlnD PII-uridylyltransferase FY139_10035 PF01842 ACT domain FY139_10040 PF03023 Lipid II flippase MurJ FY139_10050 PF00579 tRNA synthetases class I (W and Y) FY139_10060 PF01106 NifU-like domain FY139_10065 PF00814 Glycoprotease family FY139_10075 PF01475 Ferric uptake regulator family FY139_10080 PF01553 Acyltransferase FY139_10085 PF04055 Radical SAM superfamily FY139_10085 PF01938 TRAM domain FY139_10085 PF00919 Uncharacterized protein family UPF0004 FY139_10090 PF02562 PhoH-like protein FY139_10095 PF02130 Uncharacterized protein family UPF0054 FY139_10100 PF00571 CBS domain FY139_10100 PF03471 Transporter associated domain FY139_10105 PF00795 Carbon-nitrogen hydrolase FY139_10110 PF01381 Helix-turn-helix FY139_10115 PF00438 S-adenosylmethionine synthetase, N-terminal domain FY139_10115 PF02773 S-adenosylmethionine synthetase, C-terminal domain FY139_10115 PF02772 S-adenosylmethionine synthetase, central domain FY139_10120 PF02390 Putative methyltransferase FY139_10125 PF00294 pfkB family carbohydrate kinase FY139_10130 PF02646 RmuC family FY139_10135 PF01327 Polypeptide deformylase FY139_10140 PF00551 Formyl transferase FY139_10140 PF02911 Formyl transferase, C-terminal domain FY139_10145 PF01416 tRNA pseudouridine synthase FY139_10155 PF01546 Peptidase family M20/M25/M40 FY139_10155 PF07687 Peptidase dimerisation domain FY139_10160 PF00132 Bacterial transferase hexapeptide (six repeats) FY139_10160 PF14602 Hexapeptide repeat of succinyl-transferase FY139_10160 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal FY139_10170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_10170 PF00672 HAMP domain FY139_10175 PF01156 Inosine-uridine preferring nucleoside hydrolase FY139_10180 PF00011 Hsp20/alpha crystallin family FY139_10205 PF00696 Amino acid kinase family FY139_10215 PF01926 50S ribosome-binding GTPase FY139_10220 PF14849 YidC periplasmic domain FY139_10220 PF02096 60Kd inner membrane protein FY139_10225 PF00825 Ribonuclease P FY139_10230 PF00468 Ribosomal protein L34 FY139_10235 PF00672 HAMP domain FY139_10235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_10240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_10240 PF00512 His Kinase A (phospho-acceptor) domain FY139_10250 PF01209 ubiE/COQ5 methyltransferase family FY139_10255 PF00005 ABC transporter FY139_10260 PF00528 Binding-protein-dependent transport system inner membrane component FY139_10265 PF00528 Binding-protein-dependent transport system inner membrane component FY139_10275 PF00149 Calcineurin-like phosphoesterase FY139_10280 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain FY139_10280 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain FY139_10290 PF05544 Proline racemase FY139_10295 PF01979 Amidohydrolase family FY139_10300 PF00156 Phosphoribosyl transferase domain FY139_10305 PF00294 pfkB family carbohydrate kinase FY139_10320 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FY139_10320 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FY139_10325 PF00342 Phosphoglucose isomerase FY139_10330 PF13193 AMP-binding enzyme C-terminal domain FY139_10330 PF00501 AMP-binding enzyme FY139_10335 PF00005 ABC transporter FY139_10335 PF08402 TOBE domain FY139_10345 PF00528 Binding-protein-dependent transport system inner membrane component FY139_10350 PF00593 TonB dependent receptor FY139_10350 PF07715 TonB-dependent Receptor Plug Domain FY139_10370 PF01679 Proteolipid membrane potential modulator FY139_10395 PF03976 Polyphosphate kinase 2 (PPK2) FY139_10400 PF16736 Single Cache-like FY139_10400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_10400 PF00512 His Kinase A (phospho-acceptor) domain FY139_10400 PF00989 PAS fold FY139_10405 PF12849 PBP superfamily domain FY139_10410 PF00528 Binding-protein-dependent transport system inner membrane component FY139_10415 PF00528 Binding-protein-dependent transport system inner membrane component FY139_10420 PF00005 ABC transporter FY139_10425 PF01895 PhoU domain FY139_10430 PF00072 Response regulator receiver domain FY139_10430 PF00486 Transcriptional regulatory protein, C terminal FY139_10440 PF00202 Aminotransferase class-III FY139_10445 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FY139_10445 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FY139_10450 PF01430 Hsp33 protein FY139_10455 PF04379 ApaG domain FY139_10460 PF01053 Cys/Met metabolism PLP-dependent enzyme FY139_10470 PF00692 dUTPase FY139_10480 PF13356 Arm DNA-binding domain FY139_10480 PF00589 Phage integrase family FY139_10490 PF02796 Helix-turn-helix domain of resolvase FY139_10490 PF00239 Resolvase, N terminal domain FY139_10505 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system FY139_10525 PF01381 Helix-turn-helix FY139_10525 PF08671 Anti-repressor SinI FY139_10565 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family FY139_10570 PF00230 Major intrinsic protein FY139_10610 PF00196 Bacterial regulatory proteins, luxR family FY139_10610 PF00072 Response regulator receiver domain FY139_10620 PF01180 Dihydroorotate dehydrogenase FY139_10655 PF02082 Transcriptional regulator FY139_10660 PF08494 DEAD/H associated FY139_10660 PF00271 Helicase conserved C-terminal domain FY139_10660 PF00270 DEAD/DEAH box helicase FY139_10680 PF01925 Sulfite exporter TauE/SafE FY139_10690 PF12806 Acetyl-CoA dehydrogenase C-terminal like FY139_10690 PF02770 Acyl-CoA dehydrogenase, middle domain FY139_10690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FY139_10690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FY139_10695 PF02803 Thiolase, C-terminal domain FY139_10695 PF00108 Thiolase, N-terminal domain FY139_10700 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FY139_10700 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FY139_10700 PF00378 Enoyl-CoA hydratase/isomerase FY139_10725 PF03334 Na+/H+ antiporter subunit FY139_10730 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) FY139_10735 PF01899 Na+/H+ ion antiporter subunit FY139_10740 PF00361 Proton-conducting membrane transporter FY139_10745 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FY139_10750 PF13244 Domain of unknown function (DUF4040) FY139_10750 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter FY139_10750 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FY139_10750 PF00361 Proton-conducting membrane transporter FY139_10760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_10770 PF00072 Response regulator receiver domain FY139_10775 PF01627 Hpt domain FY139_10775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_10775 PF02895 Signal transducing histidine kinase, homodimeric domain FY139_10775 PF01584 CheW-like domain FY139_10780 PF03705 CheR methyltransferase, all-alpha domain FY139_10780 PF01739 CheR methyltransferase, SAM binding domain FY139_10785 PF00072 Response regulator receiver domain FY139_10785 PF01339 CheB methylesterase FY139_10790 PF00072 Response regulator receiver domain FY139_10795 PF03975 CheD chemotactic sensory transduction FY139_10805 PF08345 Flagellar M-ring protein C-terminal FY139_10805 PF01514 Secretory protein of YscJ/FliF family FY139_10810 PF00196 Bacterial regulatory proteins, luxR family FY139_10810 PF03472 Autoinducer binding domain FY139_10820 PF00672 HAMP domain FY139_10820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_10825 PF00512 His Kinase A (phospho-acceptor) domain FY139_10825 PF00672 HAMP domain FY139_10825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_10825 PF01627 Hpt domain FY139_10825 PF00072 Response regulator receiver domain FY139_10830 PF01741 Large-conductance mechanosensitive channel, MscL FY139_10835 PF00155 Aminotransferase class I and II FY139_10840 PF01370 NAD dependent epimerase/dehydratase family FY139_10850 PF03884 DNA gyrase inhibitor YacG FY139_10855 PF02545 Maf-like protein FY139_10860 PF01176 Translation initiation factor 1A / IF-1 FY139_10870 PF06793 Uncharacterised protein family (UPF0262) FY139_10875 PF00815 Histidinol dehydrogenase FY139_10885 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FY139_10900 PF00669 Bacterial flagellin N-terminal helical region FY139_10900 PF00700 Bacterial flagellin C-terminal helical region FY139_10905 PF00669 Bacterial flagellin N-terminal helical region FY139_10905 PF00700 Bacterial flagellin C-terminal helical region FY139_10910 PF00669 Bacterial flagellin N-terminal helical region FY139_10910 PF00700 Bacterial flagellin C-terminal helical region FY139_10915 PF00813 FliP family FY139_10925 PF02107 Flagellar L-ring protein FY139_10935 PF02119 Flagellar P-ring protein FY139_10940 PF13144 Chaperone for flagella basal body P-ring formation FY139_10945 PF00460 Flagella basal body rod protein FY139_10945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FY139_10950 PF02049 Flagellar hook-basal body complex protein FliE FY139_10955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FY139_10960 PF00460 Flagella basal body rod protein FY139_10970 PF18269 T3SS EscN ATPase C-terminal domain FY139_10970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FY139_10975 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FY139_10975 PF00460 Flagella basal body rod protein FY139_10985 PF01618 MotA/TolQ/ExbB proton channel family FY139_10990 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FY139_10995 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FY139_11000 PF14842 FliG N-terminal domain FY139_11000 PF14841 FliG middle domain FY139_11000 PF01706 FliG C-terminal domain FY139_11005 PF01312 FlhB HrpN YscU SpaS Family FY139_11015 PF00669 Bacterial flagellin N-terminal helical region FY139_11015 PF00700 Bacterial flagellin C-terminal helical region FY139_11025 PF00691 OmpA family FY139_11025 PF13677 Membrane MotB of proton-channel complex MotA/MotB FY139_11035 PF02120 Flagellar hook-length control protein FliK FY139_11045 PF00486 Transcriptional regulatory protein, C terminal FY139_11050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FY139_11050 PF00460 Flagella basal body rod protein FY139_11050 PF07559 Flagellar basal body protein FlaE FY139_11070 PF07378 Flagellar protein FlbT FY139_11075 PF03963 Flagellar hook capping protein - N-terminal region FY139_11080 PF01313 Bacterial export proteins, family 3 FY139_11085 PF00771 FHIPEP family FY139_11090 PF01311 Bacterial export proteins, family 1 FY139_11125 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FY139_11125 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FY139_11130 PF00356 Bacterial regulatory proteins, lacI family FY139_11135 PF01547 Bacterial extracellular solute-binding protein FY139_11140 PF00528 Binding-protein-dependent transport system inner membrane component FY139_11145 PF00528 Binding-protein-dependent transport system inner membrane component FY139_11150 PF00128 Alpha amylase, catalytic domain FY139_11155 PF17912 MalK OB fold domain FY139_11155 PF03459 TOBE domain FY139_11155 PF00005 ABC transporter FY139_11170 PF00920 Dehydratase family FY139_11175 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase FY139_11180 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain FY139_11180 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain FY139_11185 PF01266 FAD dependent oxidoreductase FY139_11190 PF00120 Glutamine synthetase, catalytic domain FY139_11215 PF00463 Isocitrate lyase family FY139_11220 PF09856 Predicted transcriptional regulator (DUF2083) FY139_11220 PF06114 IrrE N-terminal-like domain FY139_11220 PF01381 Helix-turn-helix FY139_11225 PF13416 Bacterial extracellular solute-binding protein FY139_11230 PF00005 ABC transporter FY139_11230 PF08402 TOBE domain FY139_11235 PF00528 Binding-protein-dependent transport system inner membrane component FY139_11240 PF00528 Binding-protein-dependent transport system inner membrane component FY139_11255 PF13426 PAS domain FY139_11255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_11255 PF00512 His Kinase A (phospho-acceptor) domain FY139_11255 PF00989 PAS fold FY139_11255 PF13188 PAS domain FY139_11265 PF02541 Ppx/GppA phosphatase family FY139_11270 PF01728 FtsJ-like methyltransferase FY139_11275 PF07690 Major Facilitator Superfamily FY139_11280 PF00753 Metallo-beta-lactamase superfamily FY139_11285 PF00571 CBS domain FY139_11285 PF00478 IMP dehydrogenase / GMP reductase domain FY139_11295 PF00107 Zinc-binding dehydrogenase FY139_11295 PF08240 Alcohol dehydrogenase GroES-like domain FY139_11300 PF01738 Dienelactone hydrolase family FY139_11305 PF00994 Probable molybdopterin binding domain FY139_11310 PF00288 GHMP kinases N terminal domain FY139_11310 PF08544 GHMP kinases C terminal FY139_11320 PF00348 Polyprenyl synthetase FY139_11335 PF06965 Na+/H+ antiporter 1 FY139_11335 PF01343 Peptidase family S49 FY139_11345 PF02091 Glycyl-tRNA synthetase alpha subunit FY139_11355 PF04011 LemA family FY139_11360 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FY139_11370 PF02092 Glycyl-tRNA synthetase beta subunit FY139_11370 PF05746 DALR anticodon binding domain FY139_11375 PF04463 Protein of unknown function (DUF523) FY139_11380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_11380 PF00672 HAMP domain FY139_11380 PF17200 Single Cache domain 2 FY139_11390 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FY139_11390 PF02843 Phosphoribosylglycinamide synthetase, C domain FY139_11390 PF02844 Phosphoribosylglycinamide synthetase, N domain FY139_11395 PF17674 HHH domain FY139_11395 PF16921 Tex protein YqgF-like domain FY139_11395 PF00575 S1 RNA binding domain FY139_11395 PF09371 Tex-like protein N-terminal domain FY139_11410 PF01040 UbiA prenyltransferase family FY139_11425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_11425 PF03466 LysR substrate binding domain FY139_11435 PF04107 Glutamate-cysteine ligase family 2(GCS2) FY139_11440 PF04452 RNA methyltransferase FY139_11445 PF01384 Phosphate transporter family FY139_11455 PF05116 Sucrose-6F-phosphate phosphohydrolase FY139_11460 PF13439 Glycosyltransferase Family 4 FY139_11460 PF00534 Glycosyl transferases group 1 FY139_11465 PF00392 Bacterial regulatory proteins, gntR family FY139_11465 PF07729 FCD domain FY139_11475 PF03466 LysR substrate binding domain FY139_11475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_11480 PF02913 FAD linked oxidases, C-terminal domain FY139_11480 PF01565 FAD binding domain FY139_11485 PF02913 FAD linked oxidases, C-terminal domain FY139_11485 PF01565 FAD binding domain FY139_11490 PF02754 Cysteine-rich domain FY139_11490 PF13183 4Fe-4S dicluster domain FY139_11500 PF17969 L,D-transpeptidase C-terminal domain FY139_11500 PF03734 L,D-transpeptidase catalytic domain FY139_11505 PF03352 Methyladenine glycosylase FY139_11515 PF03601 Conserved hypothetical protein 698 FY139_11520 PF03466 LysR substrate binding domain FY139_11520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_11550 PF03129 Anticodon binding domain FY139_11550 PF13393 Histidyl-tRNA synthetase FY139_11560 PF13393 Histidyl-tRNA synthetase FY139_11565 PF01634 ATP phosphoribosyltransferase FY139_11570 PF07681 DoxX FY139_11580 PF00118 TCP-1/cpn60 chaperonin family FY139_11585 PF00166 Chaperonin 10 Kd subunit FY139_11595 PF06574 FAD synthetase FY139_11595 PF01687 Riboflavin kinase FY139_11600 PF08264 Anticodon-binding domain of tRNA FY139_11600 PF00133 tRNA synthetases class I (I, L, M and V) FY139_11610 PF14437 MafB19-like deaminase FY139_11615 PF00849 RNA pseudouridylate synthase FY139_11615 PF01479 S4 domain FY139_11625 PF01734 Patatin-like phospholipase FY139_11630 PF00999 Sodium/hydrogen exchanger family FY139_11630 PF02254 TrkA-N domain FY139_11635 PF01523 Putative modulator of DNA gyrase FY139_11640 PF00459 Inositol monophosphatase family FY139_11650 PF00534 Glycosyl transferases group 1 FY139_11650 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) FY139_11660 PF02606 Tetraacyldisaccharide-1-P 4'-kinase FY139_11670 PF01119 DNA mismatch repair protein, C-terminal domain FY139_11670 PF08676 MutL C terminal dimerisation domain FY139_11675 PF00072 Response regulator receiver domain FY139_11675 PF00486 Transcriptional regulatory protein, C terminal FY139_11680 PF03707 Bacterial signalling protein N terminal repeat FY139_11680 PF00990 Diguanylate cyclase, GGDEF domain FY139_11680 PF13188 PAS domain FY139_11680 PF00563 EAL domain FY139_11685 PF08450 SMP-30/Gluconolactonase/LRE-like region FY139_11690 PF01081 KDPG and KHG aldolase FY139_11695 PF05035 2-keto-3-deoxy-galactonokinase FY139_11705 PF09339 IclR helix-turn-helix domain FY139_11705 PF01614 Bacterial transcriptional regulator FY139_11710 PF03472 Autoinducer binding domain FY139_11710 PF00196 Bacterial regulatory proteins, luxR family FY139_11720 PF10609 NUBPL iron-transfer P-loop NTPase FY139_11725 PF01544 CorA-like Mg2+ transporter protein FY139_11730 PF02705 K+ potassium transporter FY139_11745 PF00119 ATP synthase A chain FY139_11750 PF00137 ATP synthase subunit C FY139_11755 PF00430 ATP synthase B/B' CF(0) FY139_11760 PF00430 ATP synthase B/B' CF(0) FY139_11765 PF09828 Chromate resistance exported protein FY139_11770 PF02417 Chromate transporter FY139_11775 PF01351 Ribonuclease HII FY139_11790 PF01565 FAD binding domain FY139_11790 PF02913 FAD linked oxidases, C-terminal domain FY139_11795 PF03481 Putative GTP-binding controlling metal-binding FY139_11795 PF01300 Telomere recombination FY139_11805 PF00355 Rieske [2Fe-2S] domain FY139_11805 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FY139_11810 PF00970 Oxidoreductase FAD-binding domain FY139_11810 PF00111 2Fe-2S iron-sulfur cluster binding domain FY139_11810 PF00175 Oxidoreductase NAD-binding domain FY139_11815 PF07886 BA14K-like protein FY139_11820 PF07886 BA14K-like protein FY139_11830 PF12806 Acetyl-CoA dehydrogenase C-terminal like FY139_11830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FY139_11830 PF02770 Acyl-CoA dehydrogenase, middle domain FY139_11830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FY139_11845 PF05958 tRNA (Uracil-5-)-methyltransferase FY139_11850 PF01728 FtsJ-like methyltransferase FY139_11850 PF01479 S4 domain FY139_11855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_11855 PF02203 Tar ligand binding domain homologue FY139_11855 PF00672 HAMP domain FY139_11865 PF01037 Lrp/AsnC ligand binding domain FY139_11890 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FY139_11890 PF02779 Transketolase, pyrimidine binding domain FY139_11890 PF02780 Transketolase, C-terminal domain FY139_11895 PF05726 Pirin C-terminal cupin domain FY139_11895 PF02678 Pirin FY139_11900 PF02609 Exonuclease VII small subunit FY139_11905 PF00850 Histone deacetylase domain FY139_11910 PF02632 BioY family FY139_11915 PF02361 Cobalt transport protein FY139_11920 PF00005 ABC transporter FY139_11925 PF06224 Winged helix DNA-binding domain FY139_11930 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FY139_11930 PF00925 GTP cyclohydrolase II FY139_11935 PF01264 Chorismate synthase FY139_11950 PF00300 Histidine phosphatase superfamily (branch 1) FY139_11960 PF01556 DnaJ C terminal domain FY139_11960 PF00226 DnaJ domain FY139_11960 PF00684 DnaJ central domain FY139_11970 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region FY139_11970 PF01243 Pyridoxamine 5'-phosphate oxidase FY139_11990 PF13419 Haloacid dehalogenase-like hydrolase FY139_12000 PF01523 Putative modulator of DNA gyrase FY139_12010 PF02790 Cytochrome C oxidase subunit II, transmembrane domain FY139_12010 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FY139_12015 PF00115 Cytochrome C and Quinol oxidase polypeptide I FY139_12020 PF01040 UbiA prenyltransferase family FY139_12025 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 FY139_12030 PF00510 Cytochrome c oxidase subunit III FY139_12040 PF02104 SURF1 family FY139_12045 PF02401 LytB protein FY139_12050 PF01636 Phosphotransferase enzyme family FY139_12055 PF00075 RNase H FY139_12065 PF00462 Glutaredoxin FY139_12065 PF08534 Redoxin FY139_12075 PF02622 Uncharacterized ACR, COG1678 FY139_12080 PF05532 CsbD-like FY139_12085 PF15887 Putative zinc-binding metallo-peptidase FY139_12085 PF10005 zinc-ribbon domain FY139_12090 PF00563 EAL domain FY139_12090 PF13188 PAS domain FY139_12090 PF03707 Bacterial signalling protein N terminal repeat FY139_12090 PF00990 Diguanylate cyclase, GGDEF domain FY139_12095 PF13302 Acetyltransferase (GNAT) domain FY139_12100 PF00675 Insulinase (Peptidase family M16) FY139_12100 PF05193 Peptidase M16 inactive domain FY139_12105 PF00291 Pyridoxal-phosphate dependent enzyme FY139_12105 PF14821 Threonine synthase N terminus FY139_12125 PF13419 Haloacid dehalogenase-like hydrolase FY139_12130 PF07729 FCD domain FY139_12130 PF00392 Bacterial regulatory proteins, gntR family FY139_12145 PF18755 Restriction Enzyme Adenine Methylase Associated FY139_12145 PF01555 DNA methylase FY139_12150 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH FY139_12155 PF05016 ParE toxin of type II toxin-antitoxin system, parDE FY139_12165 PF14815 NUDIX domain FY139_12165 PF00730 HhH-GPD superfamily base excision DNA repair protein FY139_12180 PF13462 Thioredoxin FY139_12185 PF02463 RecF/RecN/SMC N terminal domain FY139_12190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FY139_12195 PF02896 PEP-utilising enzyme, TIM barrel domain FY139_12195 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FY139_12195 PF00391 PEP-utilising enzyme, mobile domain FY139_12205 PF00375 Sodium:dicarboxylate symporter family FY139_12230 PF06039 Malate:quinone oxidoreductase (Mqo) FY139_12245 PF00009 Elongation factor Tu GTP binding domain FY139_12250 PF01507 Phosphoadenosine phosphosulfate reductase family FY139_12255 PF01507 Phosphoadenosine phosphosulfate reductase family FY139_12260 PF02082 Transcriptional regulator FY139_12270 PF00528 Binding-protein-dependent transport system inner membrane component FY139_12275 PF00528 Binding-protein-dependent transport system inner membrane component FY139_12280 PF00005 ABC transporter FY139_12280 PF12857 TOBE-like domain FY139_12285 PF08659 KR domain FY139_12285 PF14765 Polyketide synthase dehydratase FY139_12285 PF00550 Phosphopantetheine attachment site FY139_12285 PF02801 Beta-ketoacyl synthase, C-terminal domain FY139_12285 PF00109 Beta-ketoacyl synthase, N-terminal domain FY139_12285 PF16197 Ketoacyl-synthetase C-terminal extension FY139_12285 PF00107 Zinc-binding dehydrogenase FY139_12285 PF08240 Alcohol dehydrogenase GroES-like domain FY139_12285 PF00698 Acyl transferase domain FY139_12290 PF00990 Diguanylate cyclase, GGDEF domain FY139_12290 PF00989 PAS fold FY139_12290 PF01590 GAF domain FY139_12290 PF00563 EAL domain FY139_12300 PF13977 BetI-type transcriptional repressor, C-terminal FY139_12300 PF00440 Bacterial regulatory proteins, tetR family FY139_12305 PF00171 Aldehyde dehydrogenase family FY139_12310 PF00732 GMC oxidoreductase FY139_12310 PF05199 GMC oxidoreductase FY139_12340 PF02798 Glutathione S-transferase, N-terminal domain FY139_12340 PF00043 Glutathione S-transferase, C-terminal domain FY139_12350 PF07690 Major Facilitator Superfamily FY139_12360 PF05973 Phage derived protein Gp49-like (DUF891) FY139_12370 PF01068 ATP dependent DNA ligase domain FY139_12370 PF04675 DNA ligase N terminus FY139_12370 PF04679 ATP dependent DNA ligase C terminal region FY139_12380 PF04488 Glycosyltransferase sugar-binding region containing DXD motif FY139_12385 PF00403 Heavy-metal-associated domain FY139_12390 PF03734 L,D-transpeptidase catalytic domain FY139_12390 PF17969 L,D-transpeptidase C-terminal domain FY139_12395 PF03734 L,D-transpeptidase catalytic domain FY139_12395 PF17969 L,D-transpeptidase C-terminal domain FY139_12400 PF01047 MarR family FY139_12405 PF02566 OsmC-like protein FY139_12420 PF12848 ABC transporter FY139_12420 PF00005 ABC transporter FY139_12450 PF03466 LysR substrate binding domain FY139_12450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_12455 PF00106 short chain dehydrogenase FY139_12470 PF05872 Bacterial protein of unknown function (DUF853) FY139_12480 PF01638 HxlR-like helix-turn-helix FY139_12485 PF00106 short chain dehydrogenase FY139_12490 PF12833 Helix-turn-helix domain FY139_12500 PF00248 Aldo/keto reductase family FY139_12505 PF01062 Bestrophin, RFP-TM, chloride channel FY139_12510 PF13280 WYL domain FY139_12510 PF08279 HTH domain FY139_12525 PF01063 Amino-transferase class IV FY139_12530 PF00672 HAMP domain FY139_12530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_12535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_12535 PF03466 LysR substrate binding domain FY139_12550 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FY139_12550 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FY139_12565 PF01810 LysE type translocator FY139_12570 PF01322 Cytochrome C' FY139_12575 PF00034 Cytochrome c FY139_12605 PF00561 alpha/beta hydrolase fold FY139_12610 PF00376 MerR family regulatory protein FY139_12610 PF09278 MerR, DNA binding FY139_12620 PF02583 Metal-sensitive transcriptional repressor FY139_12635 PF00005 ABC transporter FY139_12635 PF00571 CBS domain FY139_12640 PF00528 Binding-protein-dependent transport system inner membrane component FY139_12655 PF00326 Prolyl oligopeptidase family FY139_12655 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain FY139_12665 PF00701 Dihydrodipicolinate synthetase family FY139_12675 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FY139_12675 PF12833 Helix-turn-helix domain FY139_12675 PF02805 Metal binding domain of Ada FY139_12675 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FY139_12680 PF01594 AI-2E family transporter FY139_12685 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FY139_12700 PF03006 Haemolysin-III related FY139_12710 PF01810 LysE type translocator FY139_12715 PF01641 SelR domain FY139_12720 PF00361 Proton-conducting membrane transporter FY139_12720 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FY139_12720 PF13244 Domain of unknown function (DUF4040) FY139_12725 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter FY139_12730 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FY139_12735 PF00361 Proton-conducting membrane transporter FY139_12740 PF01899 Na+/H+ ion antiporter subunit FY139_12745 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) FY139_12750 PF03334 Na+/H+ antiporter subunit FY139_12755 PF05443 ROS/MUCR transcriptional regulator protein FY139_12770 PF02657 Fe-S metabolism associated domain FY139_12775 PF17264 Family of unknown function (DUF5330) FY139_12780 PF00512 His Kinase A (phospho-acceptor) domain FY139_12780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_12815 PF01810 LysE type translocator FY139_12820 PF03466 LysR substrate binding domain FY139_12820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_12825 PF00912 Transglycosylase FY139_12825 PF00905 Penicillin binding protein transpeptidase domain FY139_12830 PF03692 Putative zinc- or iron-chelating domain FY139_12835 PF00905 Penicillin binding protein transpeptidase domain FY139_12845 PF00403 Heavy-metal-associated domain FY139_12850 PF00376 MerR family regulatory protein FY139_12850 PF09278 MerR, DNA binding FY139_12875 PF07690 Major Facilitator Superfamily FY139_12880 PF00251 Glycosyl hydrolases family 32 N-terminal domain FY139_12880 PF08244 Glycosyl hydrolases family 32 C terminal FY139_12885 PF02696 Uncharacterized ACR, YdiU/UPF0061 family FY139_12895 PF01037 Lrp/AsnC ligand binding domain FY139_12895 PF13404 AsnC-type helix-turn-helix domain FY139_12935 PF04860 Phage portal protein FY139_13025 PF00486 Transcriptional regulatory protein, C terminal FY139_13025 PF00072 Response regulator receiver domain FY139_13030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_13045 PF03100 CcmE FY139_13050 PF01578 Cytochrome C assembly protein FY139_13050 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal FY139_13055 PF03918 Cytochrome C biogenesis protein FY139_13060 PF13180 PDZ domain FY139_13065 PF00486 Transcriptional regulatory protein, C terminal FY139_13065 PF00072 Response regulator receiver domain FY139_13070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_13070 PF00672 HAMP domain FY139_13070 PF00512 His Kinase A (phospho-acceptor) domain FY139_13075 PF04134 Protein of unknown function, DUF393 FY139_13080 PF06629 MltA-interacting protein MipA FY139_13085 PF08335 GlnD PII-uridylyltransferase FY139_13085 PF03710 Glutamate-ammonia ligase adenylyltransferase FY139_13090 PF00989 PAS fold FY139_13090 PF00512 His Kinase A (phospho-acceptor) domain FY139_13090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_13100 PF01433 Peptidase family M1 domain FY139_13100 PF11940 Domain of unknown function (DUF3458) Ig-like fold FY139_13100 PF17432 Domain of unknown function (DUF3458_C) ARM repeats FY139_13105 PF00892 EamA-like transporter family FY139_13120 PF00012 Hsp70 protein FY139_13125 PF00990 Diguanylate cyclase, GGDEF domain FY139_13155 PF00107 Zinc-binding dehydrogenase FY139_13155 PF08240 Alcohol dehydrogenase GroES-like domain FY139_13160 PF01638 HxlR-like helix-turn-helix FY139_13165 PF02673 Bacitracin resistance protein BacA FY139_13170 PF00571 CBS domain FY139_13170 PF01769 Divalent cation transporter FY139_13170 PF03448 MgtE intracellular N domain FY139_13175 PF07690 Major Facilitator Superfamily FY139_13180 PF00781 Diacylglycerol kinase catalytic domain FY139_13185 PF00202 Aminotransferase class-III FY139_13200 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus FY139_13200 PF01048 Phosphorylase superfamily FY139_13225 PF00155 Aminotransferase class I and II FY139_13235 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_13235 PF14759 Reductase C-terminal FY139_13240 PF03328 HpcH/HpaI aldolase/citrate lyase family FY139_13255 PF02530 Porin subfamily FY139_13260 PF02530 Porin subfamily FY139_13265 PF01464 Transglycosylase SLT domain FY139_13265 PF14718 Soluble lytic murein transglycosylase L domain FY139_13270 PF00701 Dihydrodipicolinate synthetase family FY139_13275 PF01668 SmpB protein FY139_13280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_13290 PF01192 RNA polymerase Rpb6 FY139_13295 PF02824 TGS domain FY139_13295 PF13291 ACT domain FY139_13295 PF04607 Region found in RelA / SpoT proteins FY139_13310 PF01648 4'-phosphopantetheinyl transferase superfamily FY139_13315 PF10502 Signal peptidase, peptidase S26 FY139_13320 PF00035 Double-stranded RNA binding motif FY139_13320 PF14622 Ribonuclease-III-like FY139_13325 PF07650 KH domain FY139_13325 PF01926 50S ribosome-binding GTPase FY139_13335 PF00072 Response regulator receiver domain FY139_13340 PF11967 Recombination protein O N terminal FY139_13340 PF02565 Recombination protein O C terminal FY139_13345 PF07690 Major Facilitator Superfamily FY139_13350 PF08241 Methyltransferase domain FY139_13360 PF01966 HD domain FY139_13370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FY139_13380 PF00005 ABC transporter FY139_13385 PF00528 Binding-protein-dependent transport system inner membrane component FY139_13390 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment FY139_13395 PF00924 Mechanosensitive ion channel FY139_13395 PF05552 Conserved TM helix FY139_13405 PF01966 HD domain FY139_13410 PF01571 Aminomethyltransferase folate-binding domain FY139_13430 PF00293 NUDIX domain FY139_13435 PF02694 Uncharacterised BCR, YnfA/UPF0060 family FY139_13445 PF00990 Diguanylate cyclase, GGDEF domain FY139_13445 PF00072 Response regulator receiver domain FY139_13450 PF01066 CDP-alcohol phosphatidyltransferase FY139_13455 PF02666 Phosphatidylserine decarboxylase FY139_13460 PF00005 ABC transporter FY139_13460 PF00664 ABC transporter transmembrane region FY139_13470 PF03641 Possible lysine decarboxylase FY139_13475 PF03717 Penicillin-binding Protein dimerisation domain FY139_13475 PF00905 Penicillin binding protein transpeptidase domain FY139_13480 PF00892 EamA-like transporter family FY139_13485 PF00561 alpha/beta hydrolase fold FY139_13500 PF04480 Protein of unknown function (DUF559) FY139_13505 PF01406 tRNA synthetases class I (C) catalytic domain FY139_13505 PF09190 DALR domain FY139_13510 PF00106 short chain dehydrogenase FY139_13515 PF00156 Phosphoribosyl transferase domain FY139_13515 PF13537 Glutamine amidotransferase domain FY139_13520 PF02674 Colicin V production protein FY139_13525 PF18073 Rubredoxin metal binding domain FY139_13525 PF06745 KaiC FY139_13535 PF00842 Alanine racemase, C-terminal domain FY139_13535 PF01168 Alanine racemase, N-terminal domain FY139_13540 PF12833 Helix-turn-helix domain FY139_13540 PF12852 Cupin FY139_13545 PF03591 AzlC protein FY139_13555 PF00772 DnaB-like helicase N terminal domain FY139_13555 PF03796 DnaB-like helicase C terminal domain FY139_13570 PF13533 Biotin-lipoyl like FY139_13575 PF01281 Ribosomal protein L9, N-terminal domain FY139_13575 PF03948 Ribosomal protein L9, C-terminal domain FY139_13585 PF01084 Ribosomal protein S18 FY139_13590 PF01250 Ribosomal protein S6 FY139_13600 PF00248 Aldo/keto reductase family FY139_13605 PF00698 Acyl transferase domain FY139_13615 PF00550 Phosphopantetheine attachment site FY139_13620 PF00109 Beta-ketoacyl synthase, N-terminal domain FY139_13620 PF02801 Beta-ketoacyl synthase, C-terminal domain FY139_13630 PF02618 YceG-like family FY139_13635 PF08340 Domain of unknown function (DUF1732) FY139_13635 PF03755 YicC-like family, N-terminal region FY139_13640 PF00625 Guanylate kinase FY139_13655 PF00398 Ribosomal RNA adenine dimethylase FY139_13660 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FY139_13670 PF03968 OstA-like protein FY139_13670 PF04453 LPS transport system D FY139_13685 PF00883 Cytosol aminopeptidase family, catalytic domain FY139_13685 PF02789 Cytosol aminopeptidase family, N-terminal domain FY139_13695 PF00990 Diguanylate cyclase, GGDEF domain FY139_13695 PF00563 EAL domain FY139_13695 PF03707 Bacterial signalling protein N terminal repeat FY139_13700 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_13705 PF00360 Phytochrome region FY139_13705 PF00990 Diguanylate cyclase, GGDEF domain FY139_13705 PF01590 GAF domain FY139_13705 PF00563 EAL domain FY139_13710 PF00990 Diguanylate cyclase, GGDEF domain FY139_13710 PF03707 Bacterial signalling protein N terminal repeat FY139_13710 PF00563 EAL domain FY139_13715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_13715 PF00512 His Kinase A (phospho-acceptor) domain FY139_13715 PF00989 PAS fold FY139_13720 PF00196 Bacterial regulatory proteins, luxR family FY139_13720 PF00072 Response regulator receiver domain FY139_13730 PF00005 ABC transporter FY139_13730 PF12848 ABC transporter FY139_13735 PF17158 Membrane-associated sensor, integral membrane domain FY139_13735 PF00990 Diguanylate cyclase, GGDEF domain FY139_13740 PF13417 Glutathione S-transferase, N-terminal domain FY139_13745 PF00334 Nucleoside diphosphate kinase FY139_13765 PF02391 MoaE protein FY139_13775 PF01066 CDP-alcohol phosphatidyltransferase FY139_13780 PF01541 GIY-YIG catalytic domain FY139_13780 PF02151 UvrB/uvrC motif FY139_13780 PF08459 UvrC Helix-hairpin-helix N-terminal FY139_13790 PF13505 Outer membrane protein beta-barrel domain FY139_13800 PF00445 Ribonuclease T2 family FY139_13810 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ FY139_13815 PF00384 Molybdopterin oxidoreductase FY139_13815 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FY139_13815 PF01568 Molydopterin dinucleotide binding domain FY139_13820 PF00293 NUDIX domain FY139_13830 PF00551 Formyl transferase FY139_13835 PF00586 AIR synthase related protein, N-terminal domain FY139_13835 PF02769 AIR synthase related protein, C-terminal domain FY139_13840 PF01209 ubiE/COQ5 methyltransferase family FY139_13845 PF01594 AI-2E family transporter FY139_13855 PF02503 Polyphosphate kinase middle domain FY139_13855 PF13090 Polyphosphate kinase C-terminal domain 2 FY139_13855 PF17941 Polyphosphate kinase C-terminal domain 1 FY139_13855 PF13089 Polyphosphate kinase N-terminal domain FY139_13860 PF02541 Ppx/GppA phosphatase family FY139_13865 PF00132 Bacterial transferase hexapeptide (six repeats) FY139_13885 PF00211 Adenylate and Guanylate cyclase catalytic domain FY139_13895 PF01612 3'-5' exonuclease FY139_13895 PF00570 HRDC domain FY139_13900 PF07690 Major Facilitator Superfamily FY139_13905 PF02938 GAD domain FY139_13905 PF00152 tRNA synthetases class II (D, K and N) FY139_13905 PF01336 OB-fold nucleic acid binding domain FY139_13915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_13915 PF00672 HAMP domain FY139_13920 PF01740 STAS domain FY139_13920 PF00916 Sulfate permease family FY139_13930 PF00521 DNA gyrase/topoisomerase IV, subunit A FY139_13930 PF03989 DNA gyrase C-terminal domain, beta-propeller FY139_13935 PF04376 Arginine-tRNA-protein transferase, N terminus FY139_13935 PF04377 Arginine-tRNA-protein transferase, C terminus FY139_13945 PF00490 Delta-aminolevulinic acid dehydratase FY139_13965 PF00464 Serine hydroxymethyltransferase FY139_13970 PF03477 ATP cone domain FY139_13975 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FY139_13975 PF01872 RibD C-terminal domain FY139_13980 PF00677 Lumazine binding domain FY139_13985 PF01810 LysE type translocator FY139_13990 PF00885 6,7-dimethyl-8-ribityllumazine synthase FY139_13995 PF01029 NusB family FY139_14000 PF07690 Major Facilitator Superfamily FY139_14005 PF03030 Inorganic H+ pyrophosphatase FY139_14025 PF02504 Fatty acid synthesis protein FY139_14030 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FY139_14030 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FY139_14035 PF00216 Bacterial DNA-binding protein FY139_14040 PF13411 MerR HTH family regulatory protein FY139_14055 PF00403 Heavy-metal-associated domain FY139_14060 PF00111 2Fe-2S iron-sulfur cluster binding domain FY139_14060 PF00175 Oxidoreductase NAD-binding domain FY139_14060 PF00970 Oxidoreductase FAD-binding domain FY139_14065 PF09278 MerR, DNA binding FY139_14065 PF00376 MerR family regulatory protein FY139_14070 PF00528 Binding-protein-dependent transport system inner membrane component FY139_14075 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_14075 PF00528 Binding-protein-dependent transport system inner membrane component FY139_14080 PF00005 ABC transporter FY139_14080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_14085 PF00005 ABC transporter FY139_14085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_14090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_14100 PF02386 Cation transport protein FY139_14105 PF00585 C-terminal regulatory domain of Threonine dehydratase FY139_14105 PF00291 Pyridoxal-phosphate dependent enzyme FY139_14115 PF00990 Diguanylate cyclase, GGDEF domain FY139_14120 PF02525 Flavodoxin-like fold FY139_14125 PF03466 LysR substrate binding domain FY139_14125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_14130 PF02872 5'-nucleotidase, C-terminal domain FY139_14130 PF00149 Calcineurin-like phosphoesterase FY139_14150 PF00581 Rhodanese-like domain FY139_14155 PF02272 DHHA1 domain FY139_14155 PF01411 tRNA synthetases class II (A) FY139_14155 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FY139_14160 PF00571 CBS domain FY139_14160 PF00291 Pyridoxal-phosphate dependent enzyme FY139_14165 PF00875 DNA photolyase FY139_14165 PF03441 FAD binding domain of DNA photolyase FY139_14175 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FY139_14175 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FY139_14205 PF06055 Exopolysaccharide synthesis, ExoD FY139_14210 PF09335 SNARE associated Golgi protein FY139_14255 PF02397 Bacterial sugar transferase FY139_14260 PF00534 Glycosyl transferases group 1 FY139_14285 PF02628 Cytochrome oxidase assembly protein FY139_14290 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase FY139_14295 PF01118 Semialdehyde dehydrogenase, NAD binding domain FY139_14300 PF00491 Arginase family FY139_14305 PF00380 Ribosomal protein S9/S16 FY139_14310 PF00572 Ribosomal protein L13 FY139_14320 PF13380 CoA binding domain FY139_14325 PF01053 Cys/Met metabolism PLP-dependent enzyme FY139_14350 PF00067 Cytochrome P450 FY139_14355 PF00990 Diguanylate cyclase, GGDEF domain FY139_14360 PF00574 Clp protease FY139_14365 PF07724 AAA domain (Cdc48 subfamily) FY139_14365 PF10431 C-terminal, D2-small domain, of ClpB protein FY139_14365 PF06689 ClpX C4-type zinc finger FY139_14370 PF00004 ATPase family associated with various cellular activities (AAA) FY139_14370 PF05362 Lon protease (S16) C-terminal proteolytic domain FY139_14370 PF02190 ATP-dependent protease La (LON) substrate-binding domain FY139_14375 PF00216 Bacterial DNA-binding protein FY139_14380 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FY139_14405 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 FY139_14410 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FY139_14415 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit FY139_14425 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit FY139_14440 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FY139_14440 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FY139_14440 PF10531 SLBB domain FY139_14445 PF00384 Molybdopterin oxidoreductase FY139_14445 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal FY139_14445 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FY139_14450 PF00146 NADH dehydrogenase FY139_14455 PF12838 4Fe-4S dicluster domain FY139_14460 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FY139_14465 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FY139_14470 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FY139_14470 PF00361 Proton-conducting membrane transporter FY139_14475 PF00361 Proton-conducting membrane transporter FY139_14475 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus FY139_14480 PF00361 Proton-conducting membrane transporter FY139_14485 PF08279 HTH domain FY139_14485 PF02237 Biotin protein ligase C terminal domain FY139_14485 PF03099 Biotin/lipoate A/B protein ligase family FY139_14490 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain FY139_14490 PF17770 Ribonuclease J C-terminal domain FY139_14490 PF12706 Beta-lactamase superfamily domain FY139_14500 PF03129 Anticodon binding domain FY139_14500 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FY139_14505 PF02687 FtsX-like permease family FY139_14505 PF12704 MacB-like periplasmic core domain FY139_14510 PF00005 ABC transporter FY139_14515 PF02811 PHP domain FY139_14515 PF07733 Bacterial DNA polymerase III alpha NTPase domain FY139_14515 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FY139_14515 PF14579 Helix-hairpin-helix motif FY139_14525 PF11799 impB/mucB/samB family C-terminal domain FY139_14525 PF00817 impB/mucB/samB family FY139_14545 PF00072 Response regulator receiver domain FY139_14550 PF00072 Response regulator receiver domain FY139_14550 PF00990 Diguanylate cyclase, GGDEF domain FY139_14555 PF00471 Ribosomal protein L33 FY139_14560 PF07690 Major Facilitator Superfamily FY139_14575 PF00575 S1 RNA binding domain FY139_14575 PF08461 Ribonuclease R winged-helix domain FY139_14575 PF17876 Cold shock domain FY139_14575 PF08206 Ribonuclease B OB domain FY139_14575 PF00773 RNB domain FY139_14580 PF01131 DNA topoisomerase FY139_14580 PF01751 Toprim domain FY139_14580 PF13368 Topoisomerase C-terminal repeat FY139_14580 PF01396 Topoisomerase DNA binding C4 zinc finger FY139_14590 PF02481 DNA recombination-mediator protein A FY139_14590 PF17782 DprA winged helix domain FY139_14595 PF02660 Glycerol-3-phosphate acyltransferase FY139_14600 PF01979 Amidohydrolase family FY139_14605 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FY139_14605 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FY139_14620 PF02770 Acyl-CoA dehydrogenase, middle domain FY139_14620 PF18158 Adaptive response protein AidB N-terminal domain FY139_14620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FY139_14625 PF00583 Acetyltransferase (GNAT) family FY139_14640 PF03652 Holliday junction resolvase FY139_14645 PF03831 PhnA domain FY139_14645 PF08274 PhnA Zinc-Ribbon FY139_14655 PF02686 Glu-tRNAGln amidotransferase C subunit FY139_14660 PF01425 Amidase FY139_14665 PF13673 Acetyltransferase (GNAT) domain FY139_14665 PF00583 Acetyltransferase (GNAT) family FY139_14670 PF09857 Putative toxin of bacterial toxin-antitoxin pair FY139_14685 PF02934 GatB/GatE catalytic domain FY139_14685 PF02637 GatB domain FY139_14715 PF03588 Leucyl/phenylalanyl-tRNA protein transferase FY139_14720 PF00289 Biotin carboxylase, N-terminal domain FY139_14720 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FY139_14720 PF02785 Biotin carboxylase C-terminal domain FY139_14725 PF00364 Biotin-requiring enzyme FY139_14730 PF01220 Dehydroquinase class II FY139_14740 PF00155 Aminotransferase class I and II FY139_14765 PF12111 Polyribonucleotide phosphorylase C terminal FY139_14765 PF10150 Ribonuclease E/G family FY139_14765 PF00575 S1 RNA binding domain FY139_14770 PF01520 N-acetylmuramoyl-L-alanine amidase FY139_14775 PF17092 Penicillin-binding protein OB-like domain FY139_14775 PF00912 Transglycosylase FY139_14775 PF00905 Penicillin binding protein transpeptidase domain FY139_14795 PF01513 ATP-NAD kinase FY139_14800 PF02567 Phenazine biosynthesis-like protein FY139_14805 PF03764 Elongation factor G, domain IV FY139_14805 PF00009 Elongation factor Tu GTP binding domain FY139_14805 PF00679 Elongation factor G C-terminus FY139_14820 PF00111 2Fe-2S iron-sulfur cluster binding domain FY139_14830 PF00809 Pterin binding enzyme FY139_14835 PF02152 Dihydroneopterin aldolase FY139_14840 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FY139_14850 PF05128 Domain of unknown function (DUF697) FY139_14855 PF04317 YcjX-like family, DUF463 FY139_14865 PF01258 Prokaryotic dksA/traR C4-type zinc finger FY139_14880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_14880 PF00512 His Kinase A (phospho-acceptor) domain FY139_14880 PF08448 PAS fold FY139_14880 PF13188 PAS domain FY139_14880 PF00072 Response regulator receiver domain FY139_14885 PF02617 ATP-dependent Clp protease adaptor protein ClpS FY139_14890 PF10431 C-terminal, D2-small domain, of ClpB protein FY139_14890 PF02861 Clp amino terminal domain, pathogenicity island component FY139_14890 PF00004 ATPase family associated with various cellular activities (AAA) FY139_14890 PF07724 AAA domain (Cdc48 subfamily) FY139_14890 PF17871 AAA lid domain FY139_14910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_14910 PF03466 LysR substrate binding domain FY139_14920 PF01230 HIT domain FY139_14945 PF00318 Ribosomal protein S2 FY139_14950 PF00889 Elongation factor TS FY139_14955 PF00696 Amino acid kinase family FY139_14960 PF01765 Ribosome recycling factor FY139_14965 PF01255 Putative undecaprenyl diphosphate synthase FY139_14975 PF17820 PDZ domain FY139_14975 PF02163 Peptidase family M50 FY139_14980 PF07244 Surface antigen variable number repeat FY139_14980 PF01103 Surface antigen FY139_14985 PF00132 Bacterial transferase hexapeptide (six repeats) FY139_14985 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FY139_14990 PF07977 FabA-like domain FY139_14995 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FY139_14995 PF00132 Bacterial transferase hexapeptide (six repeats) FY139_15000 PF06230 LpxI C-terminal domain FY139_15000 PF17930 LpxI N-terminal domain FY139_15005 PF02684 Lipid-A-disaccharide synthetase FY139_15010 PF00392 Bacterial regulatory proteins, gntR family FY139_15010 PF07729 FCD domain FY139_15015 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY139_15020 PF00528 Binding-protein-dependent transport system inner membrane component FY139_15025 PF00528 Binding-protein-dependent transport system inner membrane component FY139_15030 PF00005 ABC transporter FY139_15035 PF00285 Citrate synthase, C-terminal domain FY139_15050 PF00717 Peptidase S24-like FY139_15050 PF01726 LexA DNA binding domain FY139_15075 PF00437 Type II/IV secretion system protein FY139_15075 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FY139_15080 PF00482 Type II secretion system (T2SS), protein F FY139_15100 PF07963 Prokaryotic N-terminal methylation motif FY139_15100 PF08334 Type II secretion system (T2SS), protein G FY139_15110 PF03958 Bacterial type II/III secretion system short domain FY139_15110 PF00263 Bacterial type II and III secretion system protein FY139_15135 PF00793 DAHP synthetase I family FY139_15140 PF00113 Enolase, C-terminal TIM barrel domain FY139_15140 PF03952 Enolase, N-terminal domain FY139_15150 PF00676 Dehydrogenase E1 component FY139_15155 PF00364 Biotin-requiring enzyme FY139_15155 PF02779 Transketolase, pyrimidine binding domain FY139_15155 PF02780 Transketolase, C-terminal domain FY139_15160 PF02817 e3 binding domain FY139_15160 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FY139_15160 PF00364 Biotin-requiring enzyme FY139_15170 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FY139_15170 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_15180 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family FY139_15180 PF04055 Radical SAM superfamily FY139_15185 PF00892 EamA-like transporter family FY139_15200 PF03364 Polyketide cyclase / dehydrase and lipid transport FY139_15205 PF02464 Competence-damaged protein FY139_15210 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FY139_15210 PF02542 YgbB family FY139_15215 PF01207 Dihydrouridine synthase (Dus) FY139_15220 PF00512 His Kinase A (phospho-acceptor) domain FY139_15220 PF00989 PAS fold FY139_15220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_15225 PF00072 Response regulator receiver domain FY139_15225 PF00158 Sigma-54 interaction domain FY139_15225 PF02954 Bacterial regulatory protein, Fis family FY139_15230 PF00672 HAMP domain FY139_15230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_15230 PF00512 His Kinase A (phospho-acceptor) domain FY139_15230 PF00989 PAS fold FY139_15235 PF02954 Bacterial regulatory protein, Fis family FY139_15235 PF00072 Response regulator receiver domain FY139_15235 PF00158 Sigma-54 interaction domain FY139_15240 PF02080 TrkA-C domain FY139_15240 PF02254 TrkA-N domain FY139_15245 PF17209 Hfq protein FY139_15250 PF01926 50S ribosome-binding GTPase FY139_15250 PF16360 GTP-binding GTPase Middle Region FY139_15250 PF13167 GTP-binding GTPase N-terminal FY139_15255 PF03819 MazG nucleotide pyrophosphohydrolase domain FY139_15265 PF10414 Sirohaem synthase dimerisation region FY139_15265 PF14824 Sirohaem biosynthesis protein central FY139_15265 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FY139_15285 PF00970 Oxidoreductase FAD-binding domain FY139_15285 PF00175 Oxidoreductase NAD-binding domain FY139_15305 PF02347 Glycine cleavage system P-protein FY139_15310 PF01597 Glycine cleavage H-protein FY139_15315 PF08669 Glycine cleavage T-protein C-terminal barrel domain FY139_15315 PF01571 Aminomethyltransferase folate-binding domain FY139_15340 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FY139_15345 PF01479 S4 domain FY139_15345 PF00849 RNA pseudouridylate synthase FY139_15350 PF13419 Haloacid dehalogenase-like hydrolase FY139_15365 PF01042 Endoribonuclease L-PSP FY139_15370 PF00756 Putative esterase FY139_15380 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 FY139_15395 PF10417 C-terminal domain of 1-Cys peroxiredoxin FY139_15395 PF00578 AhpC/TSA family FY139_15400 PF02798 Glutathione S-transferase, N-terminal domain FY139_15400 PF00043 Glutathione S-transferase, C-terminal domain FY139_15415 PF03358 NADPH-dependent FMN reductase FY139_15420 PF03960 ArsC family FY139_15425 PF01758 Sodium Bile acid symporter family FY139_15430 PF01451 Low molecular weight phosphotyrosine protein phosphatase FY139_15440 PF00654 Voltage gated chloride channel FY139_15445 PF03099 Biotin/lipoate A/B protein ligase family FY139_15445 PF12706 Beta-lactamase superfamily domain FY139_15450 PF01026 TatD related DNase FY139_15455 PF08264 Anticodon-binding domain of tRNA FY139_15455 PF09334 tRNA synthetases class I (M) FY139_15460 PF09115 DNA polymerase III, delta subunit, C terminal FY139_15465 PF02223 Thymidylate kinase FY139_15470 PF00768 D-alanyl-D-alanine carboxypeptidase FY139_15470 PF07943 Penicillin-binding protein 5, C-terminal domain FY139_15475 PF05036 Sporulation related domain FY139_15475 PF03330 Lytic transglycolase FY139_15515 PF03989 DNA gyrase C-terminal domain, beta-propeller FY139_15515 PF00521 DNA gyrase/topoisomerase IV, subunit A FY139_15520 PF01914 MarC family integral membrane protein FY139_15525 PF00571 CBS domain FY139_15525 PF01743 Poly A polymerase head domain FY139_15535 PF00436 Single-strand binding protein family FY139_15540 PF17755 UvrA DNA-binding domain FY139_15540 PF17760 UvrA interaction domain FY139_15550 PF01207 Dihydrouridine synthase (Dus) FY139_15555 PF01557 Fumarylacetoacetate (FAA) hydrolase family FY139_15560 PF00132 Bacterial transferase hexapeptide (six repeats) FY139_15570 PF00950 ABC 3 transport family FY139_15575 PF00005 ABC transporter FY139_15580 PF01297 Zinc-uptake complex component A periplasmic FY139_15585 PF00356 Bacterial regulatory proteins, lacI family FY139_15595 PF00248 Aldo/keto reductase family FY139_15605 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain FY139_15605 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FY139_15610 PF03597 Cytochrome oxidase maturation protein cbb3-type FY139_15620 PF05751 FixH FY139_15625 PF13746 4Fe-4S dicluster domain FY139_15625 PF12801 4Fe-4S binding domain FY139_15625 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase FY139_15645 PF13442 Cytochrome C oxidase, cbb3-type, subunit III FY139_15645 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP FY139_15660 PF00115 Cytochrome C and Quinol oxidase polypeptide I FY139_15665 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase FY139_15685 PF00376 MerR family regulatory protein FY139_15685 PF09278 MerR, DNA binding FY139_15690 PF03448 MgtE intracellular N domain FY139_15690 PF00571 CBS domain FY139_15690 PF01769 Divalent cation transporter FY139_15695 PF00384 Molybdopterin oxidoreductase FY139_15705 PF01327 Polypeptide deformylase FY139_15715 PF00512 His Kinase A (phospho-acceptor) domain FY139_15715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_15715 PF00989 PAS fold FY139_15725 PF03099 Biotin/lipoate A/B protein ligase family FY139_15730 PF08240 Alcohol dehydrogenase GroES-like domain FY139_15730 PF00107 Zinc-binding dehydrogenase FY139_15755 PF07549 SecD/SecF GG Motif FY139_15755 PF02355 Protein export membrane protein FY139_15760 PF02699 Preprotein translocase subunit FY139_15770 PF08240 Alcohol dehydrogenase GroES-like domain FY139_15770 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FY139_15775 PF08360 QacR-like protein, C-terminal region FY139_15775 PF00440 Bacterial regulatory proteins, tetR family FY139_15780 PF00067 Cytochrome P450 FY139_15790 PF06426 Serine acetyltransferase, N-terminal FY139_15790 PF00132 Bacterial transferase hexapeptide (six repeats) FY139_15795 PF00561 alpha/beta hydrolase fold FY139_15805 PF01494 FAD binding domain FY139_15810 PF01053 Cys/Met metabolism PLP-dependent enzyme FY139_15815 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY139_15820 PF00528 Binding-protein-dependent transport system inner membrane component FY139_15825 PF00528 Binding-protein-dependent transport system inner membrane component FY139_15830 PF00005 ABC transporter FY139_15845 PF17768 RecJ OB domain FY139_15845 PF02272 DHHA1 domain FY139_15845 PF01368 DHH family FY139_15855 PF03447 Homoserine dehydrogenase, NAD binding domain FY139_15855 PF01842 ACT domain FY139_15855 PF00742 Homoserine dehydrogenase FY139_15860 PF00155 Aminotransferase class I and II FY139_15865 PF01156 Inosine-uridine preferring nucleoside hydrolase FY139_15870 PF01925 Sulfite exporter TauE/SafE FY139_15885 PF00107 Zinc-binding dehydrogenase FY139_15885 PF08240 Alcohol dehydrogenase GroES-like domain FY139_15890 PF00109 Beta-ketoacyl synthase, N-terminal domain FY139_15890 PF02801 Beta-ketoacyl synthase, C-terminal domain FY139_15900 PF07977 FabA-like domain FY139_15905 PF00550 Phosphopantetheine attachment site FY139_15910 PF04055 Radical SAM superfamily FY139_15915 PF00027 Cyclic nucleotide-binding domain FY139_15915 PF13545 Crp-like helix-turn-helix domain FY139_15925 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus FY139_15930 PF03749 Sugar fermentation stimulation protein RE domain FY139_15930 PF17746 SfsA N-terminal OB domain FY139_15935 PF00557 Metallopeptidase family M24 FY139_15940 PF04002 RadC-like JAB domain FY139_15955 PF01474 Class-II DAHP synthetase family FY139_15970 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_15970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FY139_15980 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FY139_15985 PF13419 Haloacid dehalogenase-like hydrolase FY139_15995 PF10415 Fumarase C C-terminus FY139_15995 PF00206 Lyase FY139_16005 PF00117 Glutamine amidotransferase class-I FY139_16005 PF06418 CTP synthase N-terminus FY139_16010 PF03840 Preprotein translocase SecG subunit FY139_16015 PF00121 Triosephosphate isomerase FY139_16025 PF00986 DNA gyrase B subunit, carboxyl terminus FY139_16025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_16025 PF00204 DNA gyrase B FY139_16025 PF01751 Toprim domain FY139_16030 PF01370 NAD dependent epimerase/dehydratase family FY139_16035 PF00574 Clp protease FY139_16045 PF01022 Bacterial regulatory protein, arsR family FY139_16050 PF13091 PLD-like domain FY139_16055 PF00072 Response regulator receiver domain FY139_16060 PF08669 Glycine cleavage T-protein C-terminal barrel domain FY139_16060 PF16350 FAD dependent oxidoreductase central domain FY139_16060 PF01266 FAD dependent oxidoreductase FY139_16060 PF01571 Aminomethyltransferase folate-binding domain FY139_16070 PF12794 Mechanosensitive ion channel inner membrane domain 1 FY139_16070 PF12795 Mechanosensitive ion channel porin domain FY139_16070 PF00924 Mechanosensitive ion channel FY139_16135 PF00005 ABC transporter FY139_16140 PF02405 Permease MlaE FY139_16145 PF13378 Enolase C-terminal domain-like FY139_16145 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FY139_16155 PF03949 Malic enzyme, NAD binding domain FY139_16155 PF00390 Malic enzyme, N-terminal domain FY139_16155 PF01515 Phosphate acetyl/butaryl transferase FY139_16165 PF00881 Nitroreductase family FY139_16170 PF07676 WD40-like Beta Propeller Repeat FY139_16180 PF00795 Carbon-nitrogen hydrolase FY139_16180 PF02540 NAD synthase FY139_16185 PF00884 Sulfatase FY139_16195 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_16195 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FY139_16210 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FY139_16210 PF05698 Bacterial trigger factor protein (TF) C-terminus FY139_16210 PF05697 Bacterial trigger factor protein (TF) FY139_16230 PF01134 Glucose inhibited division protein A FY139_16250 PF00107 Zinc-binding dehydrogenase FY139_16250 PF08240 Alcohol dehydrogenase GroES-like domain FY139_16260 PF00550 Phosphopantetheine attachment site FY139_16265 PF13193 AMP-binding enzyme C-terminal domain FY139_16265 PF00501 AMP-binding enzyme FY139_16275 PF04715 Anthranilate synthase component I, N terminal region FY139_16275 PF00425 chorismate binding enzyme FY139_16275 PF00117 Glutamine amidotransferase class-I FY139_16280 PF01702 Queuine tRNA-ribosyltransferase FY139_16285 PF02547 Queuosine biosynthesis protein FY139_16290 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FY139_16295 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FY139_16300 PF01467 Cytidylyltransferase-like FY139_16315 PF02885 Glycosyl transferase family, helical bundle domain FY139_16315 PF00591 Glycosyl transferase family, a/b domain FY139_16320 PF00218 Indole-3-glycerol phosphate synthase FY139_16325 PF01967 MoaC family FY139_16330 PF00994 Probable molybdopterin binding domain FY139_16330 PF03454 MoeA C-terminal region (domain IV) FY139_16330 PF03453 MoeA N-terminal region (domain I and II) FY139_16335 PF17158 Membrane-associated sensor, integral membrane domain FY139_16335 PF00990 Diguanylate cyclase, GGDEF domain FY139_16345 PF02254 TrkA-N domain FY139_16345 PF00999 Sodium/hydrogen exchanger family FY139_16355 PF06463 Molybdenum Cofactor Synthesis C FY139_16355 PF04055 Radical SAM superfamily FY139_16365 PF07690 Major Facilitator Superfamily FY139_16370 PF12804 MobA-like NTP transferase domain FY139_16375 PF03205 Molybdopterin guanine dinucleotide synthesis protein B FY139_16380 PF01551 Peptidase family M23 FY139_16390 PF01975 Survival protein SurE FY139_16395 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FY139_16395 PF02403 Seryl-tRNA synthetase N-terminal domain FY139_16400 PF00902 Sec-independent protein translocase protein (TatC) FY139_16405 PF02416 mttA/Hcf106 family FY139_16410 PF02416 mttA/Hcf106 family FY139_16415 PF04079 Segregation and condensation complex subunit ScpB FY139_16420 PF02616 Segregation and condensation protein ScpA FY139_16425 PF00933 Glycosyl hydrolase family 3 N terminal domain FY139_16435 PF00750 tRNA synthetases class I (R) FY139_16435 PF03485 Arginyl tRNA synthetase N terminal domain FY139_16435 PF05746 DALR anticodon binding domain FY139_16440 PF13286 Phosphohydrolase-associated domain FY139_16440 PF01966 HD domain FY139_16445 PF01521 Iron-sulphur cluster biosynthesis FY139_16455 PF08238 Sel1 repeat FY139_16465 PF08264 Anticodon-binding domain of tRNA FY139_16465 PF00133 tRNA synthetases class I (I, L, M and V) FY139_16465 PF10458 Valyl tRNA synthetase tRNA binding arm FY139_16615 PF00565 Staphylococcal nuclease homologue FY139_16690 PF06381 Protein of unknown function (DUF1073) FY139_16740 PF08299 Bacterial dnaA protein helix-turn-helix FY139_16740 PF00308 Bacterial dnaA protein FY139_16740 PF11638 DnaA N-terminal domain FY139_16755 PF00145 C-5 cytosine-specific DNA methylase FY139_16760 PF14528 LAGLIDADG-like domain FY139_16760 PF03796 DnaB-like helicase C terminal domain FY139_16760 PF00772 DnaB-like helicase N terminal domain FY139_16920 PF03358 NADPH-dependent FMN reductase FY139_16925 PF02464 Competence-damaged protein FY139_16925 PF18146 Damage-inducible protein CinA KH domain FY139_16925 PF00994 Probable molybdopterin binding domain FY139_16930 PF00582 Universal stress protein family FY139_16935 PF00156 Phosphoribosyl transferase domain FY139_16945 PF08471 Class II vitamin B12-dependent ribonucleotide reductase FY139_16945 PF02867 Ribonucleotide reductase, barrel domain FY139_16960 PF01566 Natural resistance-associated macrophage protein FY139_16970 PF00664 ABC transporter transmembrane region FY139_16970 PF00005 ABC transporter FY139_16975 PF01594 AI-2E family transporter FY139_16980 PF00583 Acetyltransferase (GNAT) family FY139_17010 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FY139_17010 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FY139_17010 PF03129 Anticodon binding domain FY139_17010 PF02824 TGS domain FY139_17020 PF01809 Putative membrane protein insertion efficiency factor FY139_17030 PF01227 GTP cyclohydrolase I FY139_17035 PF01502 Phosphoribosyl-AMP cyclohydrolase FY139_17040 PF01734 Patatin-like phospholipase FY139_17050 PF00571 CBS domain FY139_17050 PF00478 IMP dehydrogenase / GMP reductase domain FY139_17085 PF03313 Serine dehydratase alpha chain FY139_17085 PF03315 Serine dehydratase beta chain FY139_17125 PF03466 LysR substrate binding domain FY139_17125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_17135 PF01965 DJ-1/PfpI family FY139_17135 PF12833 Helix-turn-helix domain FY139_17140 PF03853 YjeF-related protein N-terminus FY139_17140 PF01256 Carbohydrate kinase FY139_17150 PF00543 Nitrogen regulatory protein P-II FY139_17155 PF03951 Glutamine synthetase, beta-Grasp domain FY139_17155 PF00120 Glutamine synthetase, catalytic domain FY139_17165 PF08755 Hemimethylated DNA-binding protein YccV like FY139_17175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_17185 PF00892 EamA-like transporter family FY139_17195 PF00271 Helicase conserved C-terminal domain FY139_17195 PF03461 TRCF domain FY139_17195 PF02559 CarD-like/TRCF domain FY139_17195 PF00270 DEAD/DEAH box helicase FY139_17195 PF17757 UvrB interaction domain FY139_17205 PF00270 DEAD/DEAH box helicase FY139_17205 PF00271 Helicase conserved C-terminal domain FY139_17205 PF17191 RecG wedge domain FY139_17220 PF01850 PIN domain FY139_17235 PF01380 SIS domain FY139_17245 PF00132 Bacterial transferase hexapeptide (six repeats) FY139_17245 PF14602 Hexapeptide repeat of succinyl-transferase FY139_17245 PF12804 MobA-like NTP transferase domain FY139_17250 PF07729 FCD domain FY139_17250 PF00392 Bacterial regulatory proteins, gntR family FY139_17255 PF02608 ABC transporter substrate-binding protein PnrA-like FY139_17260 PF02653 Branched-chain amino acid transport system / permease component FY139_17265 PF02653 Branched-chain amino acid transport system / permease component FY139_17270 PF00005 ABC transporter FY139_17280 PF01494 FAD binding domain FY139_17285 PF03547 Membrane transport protein FY139_17290 PF02683 Cytochrome C biogenesis protein transmembrane region FY139_17310 PF00313 'Cold-shock' DNA-binding domain FY139_17360 PF00005 ABC transporter FY139_17360 PF02687 FtsX-like permease family FY139_17360 PF12704 MacB-like periplasmic core domain FY139_17365 PF12704 MacB-like periplasmic core domain FY139_17365 PF02687 FtsX-like permease family FY139_17365 PF00005 ABC transporter FY139_17385 PF01521 Iron-sulphur cluster biosynthesis FY139_17390 PF01883 Iron-sulfur cluster assembly protein FY139_17395 PF00266 Aminotransferase class-V FY139_17400 PF01458 Uncharacterized protein family (UPF0051) FY139_17405 PF00005 ABC transporter FY139_17410 PF01458 Uncharacterized protein family (UPF0051) FY139_17415 PF00266 Aminotransferase class-V FY139_17420 PF02129 X-Pro dipeptidyl-peptidase (S15 family) FY139_17425 PF03702 Anhydro-N-acetylmuramic acid kinase FY139_17430 PF00579 tRNA synthetases class I (W and Y) FY139_17440 PF00578 AhpC/TSA family FY139_17445 PF04305 Protein of unknown function (DUF455) FY139_17450 PF01476 LysM domain FY139_17450 PF08525 Opacity-associated protein A N-terminal motif FY139_17450 PF01551 Peptidase family M23 FY139_17455 PF00270 DEAD/DEAH box helicase FY139_17455 PF00271 Helicase conserved C-terminal domain FY139_17470 PF00834 Ribulose-phosphate 3 epimerase family FY139_17480 PF10397 Adenylosuccinate lyase C-terminus FY139_17480 PF00206 Lyase FY139_17490 PF01259 SAICAR synthetase FY139_17495 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase FY139_17515 PF00155 Aminotransferase class I and II FY139_17515 PF00392 Bacterial regulatory proteins, gntR family FY139_17520 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FY139_17520 PF02769 AIR synthase related protein, C-terminal domain FY139_17520 PF00586 AIR synthase related protein, N-terminal domain FY139_17540 PF00462 Glutaredoxin FY139_17545 PF07690 Major Facilitator Superfamily FY139_17550 PF00459 Inositol monophosphatase family FY139_17555 PF00459 Inositol monophosphatase family FY139_17560 PF01171 PP-loop family FY139_17565 PF04960 Glutaminase FY139_17570 PF01479 S4 domain FY139_17570 PF00163 Ribosomal protein S4/S9 N-terminal domain FY139_17575 PF03741 Integral membrane protein TerC family FY139_17585 PF00892 EamA-like transporter family FY139_17590 PF01810 LysE type translocator FY139_17600 PF01177 Asp/Glu/Hydantoin racemase FY139_17605 PF00588 SpoU rRNA Methylase family FY139_17615 PF00180 Isocitrate/isopropylmalate dehydrogenase FY139_17625 PF02272 DHHA1 domain FY139_17625 PF01411 tRNA synthetases class II (A) FY139_17625 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FY139_17630 PF00154 recA bacterial DNA recombination protein FY139_17635 PF00294 pfkB family carbohydrate kinase FY139_17640 PF04227 Indigoidine synthase A like protein FY139_17645 PF01389 OmpA-like transmembrane domain FY139_17645 PF00691 OmpA family FY139_17650 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY139_17655 PF00528 Binding-protein-dependent transport system inner membrane component FY139_17660 PF00528 Binding-protein-dependent transport system inner membrane component FY139_17665 PF06233 Usg-like family FY139_17670 PF08241 Methyltransferase domain FY139_17675 PF09084 NMT1/THI5 like FY139_17680 PF01037 Lrp/AsnC ligand binding domain FY139_17680 PF13404 AsnC-type helix-turn-helix domain FY139_17685 PF03167 Uracil DNA glycosylase superfamily FY139_17695 PF00512 His Kinase A (phospho-acceptor) domain FY139_17695 PF00989 PAS fold FY139_17695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_17700 PF01219 Prokaryotic diacylglycerol kinase FY139_17705 PF02277 Phosphoribosyltransferase FY139_17710 PF02654 Cobalamin-5-phosphate synthase FY139_17725 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FY139_17730 PF01061 ABC-2 type transporter FY139_17735 PF00005 ABC transporter FY139_17740 PF01925 Sulfite exporter TauE/SafE FY139_17750 PF08269 Cache domain FY139_17750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_17760 PF16193 AAA C-terminal domain FY139_17760 PF12002 MgsA AAA+ ATPase C terminal FY139_17760 PF00004 ATPase family associated with various cellular activities (AAA) FY139_17765 PF13180 PDZ domain FY139_17765 PF00595 PDZ domain FY139_17785 PF00920 Dehydratase family FY139_17790 PF00174 Oxidoreductase molybdopterin binding domain FY139_17795 PF01794 Ferric reductase like transmembrane component FY139_17805 PF05675 Protein of unknown function (DUF817) FY139_17810 PF01196 Ribosomal protein L17 FY139_17815 PF01000 RNA polymerase Rpb3/RpoA insert domain FY139_17815 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FY139_17815 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FY139_17820 PF00411 Ribosomal protein S11 FY139_17825 PF00416 Ribosomal protein S13/S18 FY139_17835 PF00344 SecY translocase FY139_17840 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FY139_17845 PF00327 Ribosomal protein L30p/L7e FY139_17850 PF03719 Ribosomal protein S5, C-terminal domain FY139_17850 PF00333 Ribosomal protein S5, N-terminal domain FY139_17855 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FY139_17860 PF00347 Ribosomal protein L6 FY139_17865 PF00410 Ribosomal protein S8 FY139_17870 PF00253 Ribosomal protein S14p/S29e FY139_17875 PF00673 ribosomal L5P family C-terminus FY139_17875 PF00281 Ribosomal protein L5 FY139_17880 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FY139_17880 PF00467 KOW motif FY139_17885 PF00238 Ribosomal protein L14p/L23e FY139_17890 PF00366 Ribosomal protein S17 FY139_17895 PF00831 Ribosomal L29 protein FY139_17900 PF00252 Ribosomal protein L16p/L10e FY139_17905 PF07650 KH domain FY139_17905 PF00189 Ribosomal protein S3, C-terminal domain FY139_17910 PF00237 Ribosomal protein L22p/L17e FY139_17915 PF00203 Ribosomal protein S19 FY139_17920 PF03947 Ribosomal Proteins L2, C-terminal domain FY139_17920 PF00181 Ribosomal Proteins L2, RNA binding domain FY139_17925 PF00276 Ribosomal protein L23 FY139_17930 PF00573 Ribosomal protein L4/L1 family FY139_17935 PF00297 Ribosomal protein L3 FY139_17940 PF00338 Ribosomal protein S10p/S20e FY139_17945 PF03144 Elongation factor Tu domain 2 FY139_17945 PF03143 Elongation factor Tu C-terminal domain FY139_17945 PF00009 Elongation factor Tu GTP binding domain FY139_17950 PF14492 Elongation Factor G, domain II FY139_17950 PF00679 Elongation factor G C-terminus FY139_17950 PF03764 Elongation factor G, domain IV FY139_17950 PF00009 Elongation factor Tu GTP binding domain FY139_17950 PF03144 Elongation factor Tu domain 2 FY139_17955 PF00177 Ribosomal protein S7p/S5e FY139_17960 PF00164 Ribosomal protein S12/S23 FY139_17980 PF04997 RNA polymerase Rpb1, domain 1 FY139_17980 PF00623 RNA polymerase Rpb1, domain 2 FY139_17980 PF04983 RNA polymerase Rpb1, domain 3 FY139_17980 PF05000 RNA polymerase Rpb1, domain 4 FY139_17980 PF04998 RNA polymerase Rpb1, domain 5 FY139_17985 PF00562 RNA polymerase Rpb2, domain 6 FY139_17985 PF04560 RNA polymerase Rpb2, domain 7 FY139_17985 PF04565 RNA polymerase Rpb2, domain 3 FY139_17985 PF04561 RNA polymerase Rpb2, domain 2 FY139_17985 PF04563 RNA polymerase beta subunit FY139_17985 PF10385 RNA polymerase beta subunit external 1 domain FY139_17990 PF00542 Ribosomal protein L7/L12 C-terminal domain FY139_17990 PF16320 Ribosomal protein L7/L12 dimerisation domain FY139_17995 PF00466 Ribosomal protein L10 FY139_18000 PF00687 Ribosomal protein L1p/L10e family FY139_18005 PF00298 Ribosomal protein L11, RNA binding domain FY139_18005 PF03946 Ribosomal protein L11, N-terminal domain FY139_18010 PF00467 KOW motif FY139_18010 PF02357 Transcription termination factor nusG FY139_18015 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FY139_18025 PF08485 Polysaccharide biosynthesis protein C-terminal FY139_18025 PF02719 Polysaccharide biosynthesis protein FY139_18030 PF03143 Elongation factor Tu C-terminal domain FY139_18030 PF03144 Elongation factor Tu domain 2 FY139_18030 PF00009 Elongation factor Tu GTP binding domain FY139_18035 PF03741 Integral membrane protein TerC family FY139_18040 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme FY139_18060 PF00664 ABC transporter transmembrane region FY139_18060 PF00005 ABC transporter FY139_18100 PF04542 Sigma-70 region 2 FY139_18100 PF04545 Sigma-70, region 4 FY139_18110 PF02954 Bacterial regulatory protein, Fis family FY139_18110 PF00072 Response regulator receiver domain FY139_18110 PF00158 Sigma-54 interaction domain FY139_18115 PF00072 Response regulator receiver domain FY139_18115 PF08769 Sporulation initiation factor Spo0A C terminal FY139_18120 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY139_18120 PF01627 Hpt domain FY139_18120 PF00512 His Kinase A (phospho-acceptor) domain FY139_18120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_18120 PF00072 Response regulator receiver domain FY139_18125 PF00072 Response regulator receiver domain FY139_18130 PF07536 HWE histidine kinase FY139_18130 PF08447 PAS fold FY139_18130 PF13426 PAS domain FY139_18135 PF00072 Response regulator receiver domain FY139_18140 PF00360 Phytochrome region FY139_18140 PF01590 GAF domain FY139_18140 PF08446 PAS fold FY139_18140 PF00512 His Kinase A (phospho-acceptor) domain FY139_18140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_18155 PF08032 RNA 2'-O ribose methyltransferase substrate binding FY139_18155 PF00588 SpoU rRNA Methylase family FY139_18160 PF03061 Thioesterase superfamily FY139_18180 PF13460 NAD(P)H-binding FY139_18185 PF01638 HxlR-like helix-turn-helix FY139_18200 PF02151 UvrB/uvrC motif FY139_18200 PF00271 Helicase conserved C-terminal domain FY139_18200 PF04851 Type III restriction enzyme, res subunit FY139_18200 PF17757 UvrB interaction domain FY139_18200 PF12344 Ultra-violet resistance protein B FY139_18210 PF00756 Putative esterase FY139_18210 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FY139_18230 PF01556 DnaJ C terminal domain FY139_18230 PF00226 DnaJ domain FY139_18230 PF00684 DnaJ central domain FY139_18250 PF00990 Diguanylate cyclase, GGDEF domain FY139_18250 PF17151 Periplasmic sensor domain FY139_18260 PF00005 ABC transporter FY139_18260 PF08402 TOBE domain FY139_18270 PF01547 Bacterial extracellular solute-binding protein FY139_18275 PF00155 Aminotransferase class I and II FY139_18280 PF05025 RbsD / FucU transport protein family FY139_18290 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FY139_18290 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FY139_18295 PF00440 Bacterial regulatory proteins, tetR family FY139_18300 PF12833 Helix-turn-helix domain FY139_18300 PF06719 AraC-type transcriptional regulator N-terminus FY139_18305 PF00107 Zinc-binding dehydrogenase FY139_18305 PF08240 Alcohol dehydrogenase GroES-like domain FY139_18310 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_18315 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FY139_18320 PF00196 Bacterial regulatory proteins, luxR family FY139_18320 PF03472 Autoinducer binding domain FY139_18325 PF13538 UvrD-like helicase C-terminal domain FY139_18325 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain FY139_18325 PF14490 Helix-hairpin-helix containing domain FY139_18345 PF08281 Sigma-70, region 4 FY139_18345 PF04542 Sigma-70 region 2 FY139_18360 PF00248 Aldo/keto reductase family FY139_18375 PF10369 Small subunit of acetolactate synthase FY139_18380 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FY139_18380 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FY139_18380 PF00205 Thiamine pyrophosphate enzyme, central domain FY139_18400 PF13302 Acetyltransferase (GNAT) domain FY139_18410 PF13180 PDZ domain FY139_18415 PF01145 SPFH domain / Band 7 family FY139_18420 PF01145 SPFH domain / Band 7 family FY139_18425 PF00186 Dihydrofolate reductase FY139_18430 PF00303 Thymidylate synthase FY139_18465 PF01565 FAD binding domain FY139_18465 PF02913 FAD linked oxidases, C-terminal domain FY139_18470 PF00873 AcrB/AcrD/AcrF family FY139_18475 PF13533 Biotin-lipoyl like FY139_18485 PF00580 UvrD/REP helicase N-terminal domain FY139_18485 PF13361 UvrD-like helicase C-terminal domain FY139_18510 PF00857 Isochorismatase family FY139_18530 PF00557 Metallopeptidase family M24 FY139_18530 PF01321 Creatinase/Prolidase N-terminal domain FY139_18540 PF02630 SCO1/SenC FY139_18550 PF01584 CheW-like domain FY139_18560 PF00929 Exonuclease FY139_18565 PF03466 LysR substrate binding domain FY139_18565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_18575 PF00583 Acetyltransferase (GNAT) family FY139_18580 PF01636 Phosphotransferase enzyme family FY139_18585 PF00533 BRCA1 C Terminus (BRCT) domain FY139_18585 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FY139_18585 PF12826 Helix-hairpin-helix motif FY139_18585 PF01653 NAD-dependent DNA ligase adenylation domain FY139_18585 PF03120 NAD-dependent DNA ligase OB-fold domain FY139_18590 PF02463 RecF/RecN/SMC N terminal domain FY139_18595 PF13525 Outer membrane lipoprotein FY139_18600 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase FY139_18605 PF12327 FtsZ family, C-terminal domain FY139_18605 PF00091 Tubulin/FtsZ family, GTPase domain FY139_18610 PF02491 SHS2 domain inserted in FTSA FY139_18615 PF03799 Cell division protein FtsQ FY139_18615 PF08478 POTRA domain, FtsQ-type FY139_18620 PF07478 D-ala D-ala ligase C-terminus FY139_18620 PF01820 D-ala D-ala ligase N-terminus FY139_18625 PF00083 Sugar (and other) transporter FY139_18625 PF07690 Major Facilitator Superfamily FY139_18630 PF00990 Diguanylate cyclase, GGDEF domain FY139_18630 PF00563 EAL domain FY139_18635 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FY139_18635 PF01565 FAD binding domain FY139_18640 PF02875 Mur ligase family, glutamate ligase domain FY139_18640 PF01225 Mur ligase family, catalytic domain FY139_18640 PF08245 Mur ligase middle domain FY139_18645 PF03033 Glycosyltransferase family 28 N-terminal domain FY139_18645 PF04101 Glycosyltransferase family 28 C-terminal domain FY139_18650 PF01098 Cell cycle protein FY139_18655 PF02875 Mur ligase family, glutamate ligase domain FY139_18655 PF08245 Mur ligase middle domain FY139_18660 PF00953 Glycosyl transferase family 4 FY139_18660 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 FY139_18665 PF01225 Mur ligase family, catalytic domain FY139_18665 PF08245 Mur ligase middle domain FY139_18665 PF02875 Mur ligase family, glutamate ligase domain FY139_18670 PF01225 Mur ligase family, catalytic domain FY139_18670 PF08245 Mur ligase middle domain FY139_18670 PF02875 Mur ligase family, glutamate ligase domain FY139_18675 PF00905 Penicillin binding protein transpeptidase domain FY139_18675 PF03717 Penicillin-binding Protein dimerisation domain FY139_18685 PF01795 MraW methylase family FY139_18690 PF02381 MraZ protein, putative antitoxin-like FY139_18715 PF01510 N-acetylmuramoyl-L-alanine amidase FY139_18720 PF05099 Tellurite resistance protein TerB FY139_18720 PF00226 DnaJ domain FY139_18725 PF00365 Phosphofructokinase FY139_18745 PF13649 Methyltransferase domain FY139_18750 PF01183 Glycosyl hydrolases family 25 FY139_18760 PF02219 Methylenetetrahydrofolate reductase FY139_18765 PF01209 ubiE/COQ5 methyltransferase family FY139_18770 PF00005 ABC transporter FY139_18770 PF12848 ABC transporter FY139_18775 PF12146 Serine aminopeptidase, S33 FY139_18780 PF02515 CoA-transferase family III FY139_18785 PF00205 Thiamine pyrophosphate enzyme, central domain FY139_18785 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FY139_18785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FY139_18795 PF01042 Endoribonuclease L-PSP FY139_18810 PF01476 LysM domain FY139_18810 PF03734 L,D-transpeptidase catalytic domain FY139_18815 PF07690 Major Facilitator Superfamily FY139_18835 PF10609 NUBPL iron-transfer P-loop NTPase FY139_18840 PF00465 Iron-containing alcohol dehydrogenase FY139_18845 PF00171 Aldehyde dehydrogenase family FY139_18850 PF00120 Glutamine synthetase, catalytic domain FY139_18850 PF03951 Glutamine synthetase, beta-Grasp domain FY139_18855 PF13520 Amino acid permease FY139_18865 PF01418 Helix-turn-helix domain, rpiR family FY139_18865 PF01380 SIS domain FY139_18870 PF13416 Bacterial extracellular solute-binding protein FY139_18885 PF08402 TOBE domain FY139_18885 PF00005 ABC transporter FY139_18890 PF08240 Alcohol dehydrogenase GroES-like domain FY139_18890 PF00107 Zinc-binding dehydrogenase FY139_18905 PF07690 Major Facilitator Superfamily FY139_18910 PF02965 Vitamin B12 dependent methionine synthase, activation domain FY139_18910 PF00809 Pterin binding enzyme FY139_18910 PF02574 Homocysteine S-methyltransferase FY139_18910 PF02310 B12 binding domain FY139_18910 PF02607 B12 binding domain FY139_18930 PF13505 Outer membrane protein beta-barrel domain FY139_18945 PF04402 Protein of unknown function (DUF541) FY139_18955 PF01894 Uncharacterised protein family UPF0047 FY139_18960 PF00360 Phytochrome region FY139_18960 PF01590 GAF domain FY139_18960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_18960 PF00512 His Kinase A (phospho-acceptor) domain FY139_18960 PF08446 PAS fold FY139_18970 PF04545 Sigma-70, region 4 FY139_18970 PF04539 Sigma-70 region 3 FY139_18970 PF04546 Sigma-70, non-essential region FY139_18970 PF00140 Sigma-70 factor, region 1.2 FY139_18970 PF03979 Sigma-70 factor, region 1.1 FY139_18970 PF04542 Sigma-70 region 2 FY139_18975 PF10410 DnaB-helicase binding domain of primase FY139_18975 PF08278 DNA primase DnaG DnaB-binding FY139_18975 PF08275 DNA primase catalytic core, N-terminal domain FY139_18975 PF01807 CHC2 zinc finger FY139_18995 PF00117 Glutamine amidotransferase class-I FY139_18995 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FY139_19000 PF01554 MatE FY139_19005 PF02743 Cache domain FY139_19005 PF00672 HAMP domain FY139_19005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_19015 PF04228 Putative neutral zinc metallopeptidase FY139_19030 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FY139_19030 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FY139_19030 PF02142 MGS-like domain FY139_19040 PF00990 Diguanylate cyclase, GGDEF domain FY139_19040 PF07694 5TMR of 5TMR-LYT FY139_19055 PF03449 Transcription elongation factor, N-terminal FY139_19055 PF01272 Transcription elongation factor, GreA/GreB, C-term FY139_19060 PF00534 Glycosyl transferases group 1 FY139_19065 PF01037 Lrp/AsnC ligand binding domain FY139_19070 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_19075 PF03466 LysR substrate binding domain FY139_19075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_19085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FY139_19100 PF03466 LysR substrate binding domain FY139_19100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_19110 PF01699 Sodium/calcium exchanger protein FY139_19115 PF00155 Aminotransferase class I and II FY139_19120 PF00563 EAL domain FY139_19120 PF05231 MASE1 FY139_19135 PF00313 'Cold-shock' DNA-binding domain FY139_19140 PF00753 Metallo-beta-lactamase superfamily FY139_19150 PF12802 MarR family FY139_19155 PF00072 Response regulator receiver domain FY139_19155 PF00486 Transcriptional regulatory protein, C terminal FY139_19160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_19160 PF00672 HAMP domain FY139_19160 PF00512 His Kinase A (phospho-acceptor) domain FY139_19165 PF01588 Putative tRNA binding domain FY139_19170 PF03807 NADP oxidoreductase coenzyme F420-dependent FY139_19170 PF14748 Pyrroline-5-carboxylate reductase dimerisation FY139_19185 PF01790 Prolipoprotein diacylglyceryl transferase FY139_19195 PF02578 Multi-copper polyphenol oxidoreductase laccase FY139_19210 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FY139_19210 PF14572 Phosphoribosyl synthetase-associated domain FY139_19220 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase FY139_19230 PF00535 Glycosyl transferase family 2 FY139_19235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_19235 PF00672 HAMP domain FY139_19240 PF00171 Aldehyde dehydrogenase family FY139_19245 PF02954 Bacterial regulatory protein, Fis family FY139_19250 PF00990 Diguanylate cyclase, GGDEF domain FY139_19250 PF03707 Bacterial signalling protein N terminal repeat FY139_19250 PF00563 EAL domain FY139_19250 PF13188 PAS domain FY139_19255 PF01386 Ribosomal L25p family FY139_19255 PF14693 Ribosomal protein TL5, C-terminal domain FY139_19260 PF00990 Diguanylate cyclase, GGDEF domain FY139_19260 PF08447 PAS fold FY139_19260 PF08448 PAS fold FY139_19260 PF00563 EAL domain FY139_19270 PF01195 Peptidyl-tRNA hydrolase FY139_19280 PF02617 ATP-dependent Clp protease adaptor protein ClpS FY139_19285 PF01926 50S ribosome-binding GTPase FY139_19285 PF06071 Protein of unknown function (DUF933) FY139_19305 PF00156 Phosphoribosyl transferase domain FY139_19315 PF00032 Cytochrome b(C-terminal)/b6/petD FY139_19315 PF02167 Cytochrome C1 family FY139_19315 PF00033 Cytochrome b/b6/petB FY139_19320 PF00032 Cytochrome b(C-terminal)/b6/petD FY139_19320 PF00033 Cytochrome b/b6/petB FY139_19325 PF00355 Rieske [2Fe-2S] domain FY139_19325 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal FY139_19335 PF00664 ABC transporter transmembrane region FY139_19335 PF00005 ABC transporter FY139_19345 PF00664 ABC transporter transmembrane region FY139_19345 PF00005 ABC transporter FY139_19355 PF00588 SpoU rRNA Methylase family FY139_19360 PF02690 Na+/Pi-cotransporter FY139_19370 PF01218 Coproporphyrinogen III oxidase FY139_19385 PF13735 tRNA nucleotidyltransferase domain 2 putative FY139_19385 PF12627 Probable RNA and SrmB- binding site of polymerase A FY139_19385 PF01743 Poly A polymerase head domain FY139_19390 PF00293 NUDIX domain FY139_19400 PF07726 ATPase family associated with various cellular activities (AAA) FY139_19400 PF17863 AAA lid domain FY139_19420 PF00583 Acetyltransferase (GNAT) family FY139_19425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_19425 PF03466 LysR substrate binding domain FY139_19435 PF07690 Major Facilitator Superfamily FY139_19445 PF13409 Glutathione S-transferase, N-terminal domain FY139_19450 PF00293 NUDIX domain FY139_19460 PF00682 HMGL-like FY139_19460 PF08502 LeuA allosteric (dimerisation) domain FY139_19465 PF03594 Benzoate membrane transport protein FY139_19480 PF04542 Sigma-70 region 2 FY139_19480 PF04545 Sigma-70, region 4 FY139_19490 PF00574 Clp protease FY139_19495 PF04955 HupE / UreJ protein FY139_19505 PF14489 QueF-like protein FY139_19510 PF01545 Cation efflux family FY139_19510 PF16916 Dimerisation domain of Zinc Transporter FY139_19520 PF13458 Periplasmic binding protein FY139_19530 PF01022 Bacterial regulatory protein, arsR family FY139_19535 PF00005 ABC transporter FY139_19535 PF00571 CBS domain FY139_19540 PF00528 Binding-protein-dependent transport system inner membrane component FY139_19545 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FY139_19555 PF00265 Thymidine kinase FY139_19560 PF00127 Copper binding proteins, plastocyanin/azurin family FY139_19570 PF03472 Autoinducer binding domain FY139_19570 PF00196 Bacterial regulatory proteins, luxR family FY139_19575 PF03350 Uncharacterized protein family, UPF0114 FY139_19580 PF07715 TonB-dependent Receptor Plug Domain FY139_19580 PF04886 PT repeat FY139_19580 PF00593 TonB dependent receptor FY139_19590 PF04715 Anthranilate synthase component I, N terminal region FY139_19590 PF00425 chorismate binding enzyme FY139_19590 PF00117 Glutamine amidotransferase class-I FY139_19600 PF11871 Domain of unknown function (DUF3391) FY139_19600 PF01966 HD domain FY139_19605 PF13382 Adenine deaminase C-terminal domain FY139_19605 PF01979 Amidohydrolase family FY139_19610 PF00583 Acetyltransferase (GNAT) family FY139_19615 PF00128 Alpha amylase, catalytic domain FY139_19620 PF00294 pfkB family carbohydrate kinase FY139_19640 PF01926 50S ribosome-binding GTPase FY139_19640 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FY139_19660 PF05992 SbmA/BacA-like family FY139_19670 PF00557 Metallopeptidase family M24 FY139_19685 PF01799 [2Fe-2S] binding domain FY139_19685 PF00111 2Fe-2S iron-sulfur cluster binding domain FY139_19690 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FY139_19690 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FY139_19700 PF03466 LysR substrate binding domain FY139_19700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_19715 PF01979 Amidohydrolase family FY139_19725 PF01070 FMN-dependent dehydrogenase FY139_19730 PF00893 Small Multidrug Resistance protein FY139_19735 PF17932 Tetracyclin repressor-like, C-terminal domain FY139_19735 PF00440 Bacterial regulatory proteins, tetR family FY139_19740 PF07943 Penicillin-binding protein 5, C-terminal domain FY139_19740 PF00768 D-alanyl-D-alanine carboxypeptidase FY139_19750 PF00576 HIUase/Transthyretin family FY139_19755 PF04115 Ureidoglycolate lyase FY139_19770 PF01014 Uricase FY139_19770 PF09349 OHCU decarboxylase FY139_19780 PF06299 Protein of unknown function (DUF1045) FY139_19785 PF01266 FAD dependent oxidoreductase FY139_19790 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FY139_19790 PF01266 FAD dependent oxidoreductase FY139_19795 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY139_19795 PF00072 Response regulator receiver domain FY139_19795 PF01627 Hpt domain FY139_19795 PF00512 His Kinase A (phospho-acceptor) domain FY139_19795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_19795 PF00672 HAMP domain FY139_19800 PF00270 DEAD/DEAH box helicase FY139_19800 PF00271 Helicase conserved C-terminal domain FY139_19810 PF07681 DoxX FY139_19815 PF03734 L,D-transpeptidase catalytic domain FY139_19815 PF01476 LysM domain FY139_19825 PF14403 Circularly permuted ATP-grasp type 2 FY139_19835 PF01841 Transglutaminase-like superfamily FY139_19835 PF08379 Bacterial transglutaminase-like N-terminal region FY139_19860 PF02653 Branched-chain amino acid transport system / permease component FY139_19865 PF00005 ABC transporter FY139_19870 PF13407 Periplasmic binding protein domain FY139_19875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_19875 PF03466 LysR substrate binding domain FY139_19925 PF03743 Bacterial conjugation TrbI-like protein FY139_19935 PF04335 VirB8 protein FY139_19940 PF04610 TrbL/VirB6 plasmid conjugal transfer protein FY139_19955 PF03135 CagE, TrbE, VirB family, component of type IV transporter system FY139_19970 PF00437 Type II/IV secretion system protein FY139_19980 PF02534 Type IV secretory system Conjugative DNA transfer FY139_19990 PF01381 Helix-turn-helix FY139_19995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_19995 PF03466 LysR substrate binding domain FY139_20000 PF02321 Outer membrane efflux protein FY139_20005 PF13533 Biotin-lipoyl like FY139_20020 PF02311 AraC-like ligand binding domain FY139_20020 PF12833 Helix-turn-helix domain FY139_20035 PF03466 LysR substrate binding domain FY139_20035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_20045 PF00753 Metallo-beta-lactamase superfamily FY139_20045 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain FY139_20045 PF10996 Beta-Casp domain FY139_20060 PF03466 LysR substrate binding domain FY139_20060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_20070 PF01464 Transglycosylase SLT domain FY139_20095 PF13614 AAA domain FY139_20115 PF06067 Domain of unknown function (DUF932) FY139_20130 PF07690 Major Facilitator Superfamily FY139_20135 PF03466 LysR substrate binding domain FY139_20135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_20140 PF05284 Protein of unknown function (DUF736) FY139_20155 PF02463 RecF/RecN/SMC N terminal domain FY139_20185 PF00271 Helicase conserved C-terminal domain FY139_20200 PF00570 HRDC domain FY139_20200 PF09382 RQC domain FY139_20200 PF16124 RecQ zinc-binding FY139_20200 PF00271 Helicase conserved C-terminal domain FY139_20200 PF00270 DEAD/DEAH box helicase FY139_20205 PF13784 Fic/DOC family N-terminal FY139_20205 PF02661 Fic/DOC family FY139_20220 PF03358 NADPH-dependent FMN reductase FY139_20225 PF00561 alpha/beta hydrolase fold FY139_20245 PF13533 Biotin-lipoyl like FY139_20250 PF03466 LysR substrate binding domain FY139_20250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_20255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FY139_20260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_20260 PF03466 LysR substrate binding domain FY139_20275 PF00857 Isochorismatase family FY139_20280 PF03466 LysR substrate binding domain FY139_20280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_20285 PF00004 ATPase family associated with various cellular activities (AAA) FY139_20285 PF17862 AAA+ lid domain FY139_20285 PF01434 Peptidase family M41 FY139_20295 PF00665 Integrase core domain FY139_20300 PF01695 IstB-like ATP binding protein FY139_20310 PF00672 HAMP domain FY139_20310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_20315 PF07690 Major Facilitator Superfamily FY139_20325 PF02310 B12 binding domain FY139_20325 PF00809 Pterin binding enzyme FY139_20325 PF02965 Vitamin B12 dependent methionine synthase, activation domain FY139_20325 PF02607 B12 binding domain FY139_20325 PF02574 Homocysteine S-methyltransferase FY139_20330 PF00528 Binding-protein-dependent transport system inner membrane component FY139_20335 PF00528 Binding-protein-dependent transport system inner membrane component FY139_20340 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY139_20345 PF00005 ABC transporter FY139_20365 PF00331 Glycosyl hydrolase family 10 FY139_20370 PF00535 Glycosyl transferase family 2 FY139_20385 PF03808 Glycosyl transferase WecB/TagA/CpsF family FY139_20400 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FY139_20400 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FY139_20400 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FY139_20400 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FY139_20415 PF01152 Bacterial-like globin FY139_20435 PF08362 YcdC-like protein, C-terminal region FY139_20435 PF00440 Bacterial regulatory proteins, tetR family FY139_20440 PF07687 Peptidase dimerisation domain FY139_20440 PF01546 Peptidase family M20/M25/M40 FY139_20445 PF01979 Amidohydrolase family FY139_20450 PF00293 NUDIX domain FY139_20455 PF00005 ABC transporter FY139_20460 PF00528 Binding-protein-dependent transport system inner membrane component FY139_20465 PF00528 Binding-protein-dependent transport system inner membrane component FY139_20480 PF00873 AcrB/AcrD/AcrF family FY139_20495 PF02492 CobW/HypB/UreG, nucleotide-binding domain FY139_20500 PF01730 UreF FY139_20505 PF05194 UreE urease accessory protein, C-terminal domain FY139_20505 PF02814 UreE urease accessory protein, N-terminal domain FY139_20510 PF08534 Redoxin FY139_20520 PF01979 Amidohydrolase family FY139_20520 PF00449 Urease alpha-subunit, N-terminal domain FY139_20530 PF07007 Lysozyme inhibitor LprI FY139_20540 PF00699 Urease beta subunit FY139_20545 PF06906 Protein of unknown function (DUF1272) FY139_20550 PF00547 Urease, gamma subunit FY139_20555 PF01774 UreD urease accessory protein FY139_20565 PF00005 ABC transporter FY139_20575 PF00005 ABC transporter FY139_20575 PF12399 Branched-chain amino acid ATP-binding cassette transporter FY139_20585 PF02653 Branched-chain amino acid transport system / permease component FY139_20595 PF10931 Protein of unknown function (DUF2735) FY139_20600 PF00120 Glutamine synthetase, catalytic domain FY139_20600 PF03951 Glutamine synthetase, beta-Grasp domain FY139_20610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_20610 PF00512 His Kinase A (phospho-acceptor) domain FY139_20610 PF18415 Histidine kinase receptor ArcB trans-membrane domain FY139_20610 PF01627 Hpt domain FY139_20610 PF00989 PAS fold FY139_20610 PF00072 Response regulator receiver domain FY139_20615 PF00072 Response regulator receiver domain FY139_20625 PF01522 Polysaccharide deacetylase FY139_20625 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain FY139_20630 PF13458 Periplasmic binding protein FY139_20640 PF00005 ABC transporter FY139_20645 PF00005 ABC transporter FY139_20645 PF12399 Branched-chain amino acid ATP-binding cassette transporter FY139_20650 PF02653 Branched-chain amino acid transport system / permease component FY139_20650 PF11862 Domain of unknown function (DUF3382) FY139_20655 PF02653 Branched-chain amino acid transport system / permease component FY139_20660 PF00459 Inositol monophosphatase family FY139_20690 PF00072 Response regulator receiver domain FY139_20690 PF00486 Transcriptional regulatory protein, C terminal FY139_20710 PF10090 Histidine phosphotransferase C-terminal domain FY139_20725 PF00588 SpoU rRNA Methylase family FY139_20735 PF00849 RNA pseudouridylate synthase FY139_20745 PF04542 Sigma-70 region 2 FY139_20745 PF04545 Sigma-70, region 4 FY139_20745 PF00140 Sigma-70 factor, region 1.2 FY139_20755 PF00709 Adenylosuccinate synthetase FY139_20780 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FY139_20790 PF03167 Uracil DNA glycosylase superfamily FY139_20795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FY139_20800 PF04304 Protein of unknown function (DUF454) FY139_20805 PF00005 ABC transporter FY139_20810 PF01032 FecCD transport family FY139_20815 PF01497 Periplasmic binding protein FY139_20825 PF06228 Haem utilisation ChuX/HutX FY139_20840 PF13443 Cro/C1-type HTH DNA-binding domain FY139_20850 PF00551 Formyl transferase FY139_20865 PF00512 His Kinase A (phospho-acceptor) domain FY139_20865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_20865 PF00672 HAMP domain FY139_20870 PF00486 Transcriptional regulatory protein, C terminal FY139_20870 PF00072 Response regulator receiver domain FY139_20880 PF03401 Tripartite tricarboxylate transporter family receptor FY139_20890 PF01970 Tripartite tricarboxylate transporter TctA family FY139_20905 PF01032 FecCD transport family FY139_20910 PF01032 FecCD transport family FY139_20915 PF00005 ABC transporter FY139_20920 PF00210 Ferritin-like domain FY139_20935 PF00672 HAMP domain FY139_20935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_20940 PF00248 Aldo/keto reductase family FY139_20945 PF07690 Major Facilitator Superfamily FY139_20950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_20950 PF03466 LysR substrate binding domain FY139_20955 PF03466 LysR substrate binding domain FY139_20955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_20960 PF07859 alpha/beta hydrolase fold FY139_20965 PF13533 Biotin-lipoyl like FY139_20970 PF00873 AcrB/AcrD/AcrF family FY139_20985 PF13091 PLD-like domain FY139_20985 PF13396 Phospholipase_D-nuclease N-terminal FY139_20990 PF08543 Phosphomethylpyrimidine kinase FY139_20995 PF00484 Carbonic anhydrase FY139_21005 PF01118 Semialdehyde dehydrogenase, NAD binding domain FY139_21005 PF02774 Semialdehyde dehydrogenase, dimerisation domain FY139_21015 PF00083 Sugar (and other) transporter FY139_21020 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FY139_21020 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FY139_21020 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch FY139_21025 PF02233 NAD(P) transhydrogenase beta subunit FY139_21030 PF01613 Flavin reductase like domain FY139_21035 PF00881 Nitroreductase family FY139_21040 PF00561 alpha/beta hydrolase fold FY139_21045 PF01042 Endoribonuclease L-PSP FY139_21050 PF00857 Isochorismatase family FY139_21055 PF00296 Luciferase-like monooxygenase FY139_21060 PF01126 Heme oxygenase FY139_21065 PF00701 Dihydrodipicolinate synthetase family FY139_21070 PF00392 Bacterial regulatory proteins, gntR family FY139_21070 PF07729 FCD domain FY139_21080 PF00528 Binding-protein-dependent transport system inner membrane component FY139_21085 PF00528 Binding-protein-dependent transport system inner membrane component FY139_21090 PF03459 TOBE domain FY139_21090 PF17912 MalK OB fold domain FY139_21090 PF00005 ABC transporter FY139_21095 PF00294 pfkB family carbohydrate kinase FY139_21100 PF03576 Peptidase family S58 FY139_21105 PF01063 Amino-transferase class IV FY139_21110 PF03466 LysR substrate binding domain FY139_21110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_21115 PF00144 Beta-lactamase FY139_21120 PF00005 ABC transporter FY139_21120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_21125 PF00005 ABC transporter FY139_21125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_21130 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_21130 PF00528 Binding-protein-dependent transport system inner membrane component FY139_21135 PF00528 Binding-protein-dependent transport system inner membrane component FY139_21140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_21145 PF01244 Membrane dipeptidase (Peptidase family M19) FY139_21155 PF09924 Uncharacterised conserved protein (DUF2156) FY139_21155 PF03706 Lysylphosphatidylglycerol synthase TM region FY139_21170 PF07690 Major Facilitator Superfamily FY139_21180 PF00775 Dioxygenase FY139_21180 PF04444 Catechol dioxygenase N terminus FY139_21185 PF00465 Iron-containing alcohol dehydrogenase FY139_21190 PF04909 Amidohydrolase FY139_21195 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FY139_21195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FY139_21200 PF01613 Flavin reductase like domain FY139_21220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_21220 PF00512 His Kinase A (phospho-acceptor) domain FY139_21225 PF00072 Response regulator receiver domain FY139_21225 PF00486 Transcriptional regulatory protein, C terminal FY139_21235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FY139_21240 PF08402 TOBE domain FY139_21240 PF00005 ABC transporter FY139_21245 PF00528 Binding-protein-dependent transport system inner membrane component FY139_21260 PF00486 Transcriptional regulatory protein, C terminal FY139_21260 PF00072 Response regulator receiver domain FY139_21265 PF00072 Response regulator receiver domain FY139_21265 PF13188 PAS domain FY139_21265 PF08448 PAS fold FY139_21265 PF00512 His Kinase A (phospho-acceptor) domain FY139_21265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_21270 PF00202 Aminotransferase class-III FY139_21275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_21275 PF03466 LysR substrate binding domain FY139_21280 PF00313 'Cold-shock' DNA-binding domain FY139_21320 PF01259 SAICAR synthetase FY139_21325 PF00440 Bacterial regulatory proteins, tetR family FY139_21330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY139_21330 PF00529 HlyD membrane-fusion protein of T1SS FY139_21335 PF00873 AcrB/AcrD/AcrF family FY139_21340 PF02321 Outer membrane efflux protein FY139_21345 PF01132 Elongation factor P (EF-P) OB domain FY139_21345 PF08207 Elongation factor P (EF-P) KOW-like domain FY139_21345 PF09285 Elongation factor P, C-terminal FY139_21350 PF00152 tRNA synthetases class II (D, K and N) FY139_21355 PF12544 Lysine-2,3-aminomutase FY139_21355 PF04055 Radical SAM superfamily FY139_21370 PF03466 LysR substrate binding domain FY139_21370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_21375 PF01266 FAD dependent oxidoreductase FY139_21385 PF00528 Binding-protein-dependent transport system inner membrane component FY139_21390 PF03459 TOBE domain FY139_21390 PF00005 ABC transporter FY139_21400 PF03576 Peptidase family S58 FY139_21405 PF05690 Thiazole biosynthesis protein ThiG FY139_21415 PF01266 FAD dependent oxidoreductase FY139_21420 PF01964 Radical SAM ThiC family FY139_21420 PF13667 ThiC-associated domain FY139_21430 PF00550 Phosphopantetheine attachment site FY139_21460 PF00664 ABC transporter transmembrane region FY139_21460 PF00005 ABC transporter FY139_21465 PF00027 Cyclic nucleotide-binding domain FY139_21465 PF13545 Crp-like helix-turn-helix domain FY139_21475 PF00672 HAMP domain FY139_21475 PF00211 Adenylate and Guanylate cyclase catalytic domain FY139_21485 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FY139_21485 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FY139_21485 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FY139_21490 PF13439 Glycosyltransferase Family 4 FY139_21490 PF00534 Glycosyl transferases group 1 FY139_21505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_21505 PF00005 ABC transporter FY139_21510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_21515 PF00528 Binding-protein-dependent transport system inner membrane component FY139_21520 PF00528 Binding-protein-dependent transport system inner membrane component FY139_21520 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_21535 PF04101 Glycosyltransferase family 28 C-terminal domain FY139_21535 PF03033 Glycosyltransferase family 28 N-terminal domain FY139_21540 PF03932 CutC family FY139_21545 PF07690 Major Facilitator Superfamily FY139_21555 PF00728 Glycosyl hydrolase family 20, catalytic domain FY139_21555 PF02838 Glycosyl hydrolase family 20, domain 2 FY139_21565 PF01380 SIS domain FY139_21565 PF01418 Helix-turn-helix domain, rpiR family FY139_21575 PF00005 ABC transporter FY139_21575 PF17912 MalK OB fold domain FY139_21580 PF01547 Bacterial extracellular solute-binding protein FY139_21585 PF00528 Binding-protein-dependent transport system inner membrane component FY139_21590 PF00528 Binding-protein-dependent transport system inner membrane component FY139_21605 PF00392 Bacterial regulatory proteins, gntR family FY139_21605 PF07702 UTRA domain FY139_21610 PF01380 SIS domain FY139_21615 PF01979 Amidohydrolase family FY139_21620 PF00480 ROK family FY139_21625 PF01494 FAD binding domain FY139_21630 PF01569 PAP2 superfamily FY139_21635 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FY139_21635 PF13288 DXP reductoisomerase C-terminal domain FY139_21635 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FY139_21640 PF00155 Aminotransferase class I and II FY139_21650 PF07244 Surface antigen variable number repeat FY139_21650 PF01103 Surface antigen FY139_21650 PF17243 POTRA domain TamA domain 1 FY139_21660 PF01584 CheW-like domain FY139_21665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_21665 PF08447 PAS fold FY139_21665 PF13426 PAS domain FY139_21670 PF02634 FdhD/NarQ family FY139_21675 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FY139_21680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FY139_21680 PF02874 ATP synthase alpha/beta family, beta-barrel domain FY139_21685 PF00231 ATP synthase FY139_21690 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FY139_21690 PF00306 ATP synthase alpha/beta chain, C terminal domain FY139_21690 PF02874 ATP synthase alpha/beta family, beta-barrel domain FY139_21695 PF00213 ATP synthase delta (OSCP) subunit FY139_21705 PF18074 Primosomal protein N C-terminal domain FY139_21705 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FY139_21705 PF00270 DEAD/DEAH box helicase FY139_21705 PF17764 3′ DNA-binding domain (3′BD) FY139_21710 PF02899 Phage integrase, N-terminal SAM-like domain FY139_21710 PF00589 Phage integrase family FY139_21730 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_21730 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FY139_21735 PF01810 LysE type translocator FY139_21745 PF02817 e3 binding domain FY139_21745 PF00364 Biotin-requiring enzyme FY139_21745 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FY139_21750 PF16870 2-oxoglutarate dehydrogenase C-terminal FY139_21750 PF00676 Dehydrogenase E1 component FY139_21750 PF02779 Transketolase, pyrimidine binding domain FY139_21750 PF16078 2-oxoglutarate dehydrogenase N-terminus FY139_21755 PF02629 CoA binding domain FY139_21755 PF00549 CoA-ligase FY139_21760 PF08442 ATP-grasp domain FY139_21760 PF00549 CoA-ligase FY139_21765 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FY139_21765 PF00056 lactate/malate dehydrogenase, NAD binding domain FY139_21770 PF03969 AFG1-like ATPase FY139_21775 PF02974 Protease inhibitor Inh FY139_21780 PF13085 2Fe-2S iron-sulfur cluster binding domain FY139_21780 PF13237 4Fe-4S dicluster domain FY139_21785 PF00890 FAD binding domain FY139_21785 PF02910 Fumarate reductase flavoprotein C-term FY139_21795 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FY139_21820 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FY139_21820 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FY139_21825 PF00814 Glycoprotease family FY139_21830 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain FY139_21830 PF03900 Porphobilinogen deaminase, C-terminal domain FY139_21855 PF00117 Glutamine amidotransferase class-I FY139_21865 PF02325 YGGT family FY139_21870 PF02594 Uncharacterised ACR, YggU family COG1872 FY139_21875 PF00719 Inorganic pyrophosphatase FY139_21885 PF03144 Elongation factor Tu domain 2 FY139_21885 PF00009 Elongation factor Tu GTP binding domain FY139_21885 PF00679 Elongation factor G C-terminus FY139_21890 PF01432 Peptidase family M3 FY139_21895 PF01047 MarR family FY139_21900 PF07690 Major Facilitator Superfamily FY139_21905 PF00764 Arginosuccinate synthase FY139_21910 PF00106 short chain dehydrogenase FY139_21915 PF01810 LysE type translocator FY139_21920 PF00005 ABC transporter FY139_21925 PF02653 Branched-chain amino acid transport system / permease component FY139_21935 PF04055 Radical SAM superfamily FY139_21950 PF01329 Pterin 4 alpha carbinolamine dehydratase FY139_21955 PF01451 Low molecular weight phosphotyrosine protein phosphatase FY139_21960 PF02834 LigT like Phosphoesterase FY139_21965 PF13472 GDSL-like Lipase/Acylhydrolase family FY139_21970 PF00005 ABC transporter FY139_21980 PF01027 Inhibitor of apoptosis-promoting Bax1 FY139_21995 PF00694 Aconitase C-terminal domain FY139_21995 PF00330 Aconitase family (aconitate hydratase) FY139_22000 PF00005 ABC transporter FY139_22005 PF03379 CcmB protein FY139_22010 PF01578 Cytochrome C assembly protein FY139_22020 PF08534 Redoxin FY139_22025 PF00990 Diguanylate cyclase, GGDEF domain FY139_22030 PF10755 Protein of unknown function (DUF2585) FY139_22035 PF04279 Intracellular septation protein A FY139_22040 PF02881 SRP54-type protein, helical bundle domain FY139_22040 PF00448 SRP54-type protein, GTPase domain FY139_22045 PF04055 Radical SAM superfamily FY139_22045 PF00919 Uncharacterized protein family UPF0004 FY139_22050 PF01678 Diaminopimelate epimerase FY139_22055 PF12706 Beta-lactamase superfamily domain FY139_22065 PF00448 SRP54-type protein, GTPase domain FY139_22065 PF02978 Signal peptide binding domain FY139_22065 PF02881 SRP54-type protein, helical bundle domain FY139_22070 PF02153 Prephenate dehydrogenase FY139_22070 PF01817 Chorismate mutase type II FY139_22075 PF00886 Ribosomal protein S16 FY139_22080 PF01782 RimM N-terminal domain FY139_22080 PF05239 PRC-barrel domain FY139_22085 PF01746 tRNA (Guanine-1)-methyltransferase FY139_22095 PF01245 Ribosomal protein L19 FY139_22100 PF00005 ABC transporter FY139_22100 PF00664 ABC transporter transmembrane region FY139_22105 PF00529 HlyD membrane-fusion protein of T1SS FY139_22105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY139_22115 PF07690 Major Facilitator Superfamily FY139_22120 PF00330 Aconitase family (aconitate hydratase) FY139_22135 PF01435 Peptidase family M48 FY139_22140 PF00005 ABC transporter FY139_22145 PF00528 Binding-protein-dependent transport system inner membrane component FY139_22150 PF01547 Bacterial extracellular solute-binding protein FY139_22160 PF00005 ABC transporter FY139_22160 PF16326 ABC transporter C-terminal domain FY139_22170 PF04204 Homoserine O-succinyltransferase FY139_22175 PF01263 Aldose 1-epimerase FY139_22180 PF00912 Transglycosylase FY139_22185 PF00348 Polyprenyl synthetase FY139_22190 PF13488 Glycine zipper FY139_22190 PF00691 OmpA family FY139_22195 PF04551 GcpE protein FY139_22200 PF07690 Major Facilitator Superfamily FY139_22205 PF08220 DeoR-like helix-turn-helix domain FY139_22205 PF00455 DeoR C terminal sensor domain FY139_22210 PF00289 Biotin carboxylase, N-terminal domain FY139_22210 PF00364 Biotin-requiring enzyme FY139_22210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FY139_22210 PF00682 HMGL-like FY139_22210 PF02785 Biotin carboxylase C-terminal domain FY139_22210 PF02436 Conserved carboxylase domain FY139_22215 PF00196 Bacterial regulatory proteins, luxR family FY139_22215 PF00072 Response regulator receiver domain FY139_22220 PF00664 ABC transporter transmembrane region FY139_22220 PF00005 ABC transporter FY139_22230 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain FY139_22230 PF06165 Glycosyltransferase family 36 FY139_22230 PF10091 Putative glucoamylase FY139_22235 PF01546 Peptidase family M20/M25/M40 FY139_22235 PF07687 Peptidase dimerisation domain FY139_22240 PF01266 FAD dependent oxidoreductase FY139_22245 PF00291 Pyridoxal-phosphate dependent enzyme FY139_22250 PF00920 Dehydratase family FY139_22255 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FY139_22255 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FY139_22260 PF01370 NAD dependent epimerase/dehydratase family FY139_22265 PF02913 FAD linked oxidases, C-terminal domain FY139_22265 PF01565 FAD binding domain FY139_22270 PF00392 Bacterial regulatory proteins, gntR family FY139_22270 PF07729 FCD domain FY139_22280 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component FY139_22285 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FY139_22290 PF03480 Bacterial extracellular solute-binding protein, family 7 FY139_22295 PF00501 AMP-binding enzyme FY139_22295 PF13193 AMP-binding enzyme C-terminal domain FY139_22295 PF16177 Acetyl-coenzyme A synthetase N-terminus FY139_22305 PF01168 Alanine racemase, N-terminal domain FY139_22310 PF00133 tRNA synthetases class I (I, L, M and V) FY139_22310 PF08264 Anticodon-binding domain of tRNA FY139_22310 PF13603 Leucyl-tRNA synthetase, Domain 2 FY139_22325 PF11953 Domain of unknown function (DUF3470) FY139_22325 PF00037 4Fe-4S binding domain FY139_22330 PF01479 S4 domain FY139_22330 PF00579 tRNA synthetases class I (W and Y) FY139_22345 PF01494 FAD binding domain FY139_22355 PF00543 Nitrogen regulatory protein P-II FY139_22360 PF00909 Ammonium Transporter Family FY139_22365 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FY139_22365 PF17854 FtsK alpha domain FY139_22365 PF09397 Ftsk gamma domain FY139_22365 PF01580 FtsK/SpoIIIE family FY139_22370 PF03548 Outer membrane lipoprotein carrier protein LolA FY139_22385 PF00072 Response regulator receiver domain FY139_22385 PF00486 Transcriptional regulatory protein, C terminal FY139_22395 PF02559 CarD-like/TRCF domain FY139_22400 PF05088 Bacterial NAD-glutamate dehydrogenase FY139_22405 PF11700 Vacuole effluxer Atg22 like FY139_22410 PF05233 PHB accumulation regulatory domain FY139_22410 PF07879 PHB/PHA accumulation regulator DNA-binding domain FY139_22415 PF02803 Thiolase, C-terminal domain FY139_22415 PF00108 Thiolase, N-terminal domain FY139_22430 PF00210 Ferritin-like domain FY139_22435 PF00293 NUDIX domain FY139_22440 PF04748 Divergent polysaccharide deacetylase FY139_22445 PF03572 Peptidase family S41 FY139_22445 PF13180 PDZ domain FY139_22455 PF02590 Predicted SPOUT methyltransferase FY139_22465 PF01467 Cytidylyltransferase-like FY139_22470 PF00171 Aldehyde dehydrogenase family FY139_22475 PF00696 Amino acid kinase family FY139_22475 PF01472 PUA domain FY139_22480 PF01018 GTP1/OBG FY139_22480 PF01926 50S ribosome-binding GTPase FY139_22485 PF13302 Acetyltransferase (GNAT) domain FY139_22495 PF01016 Ribosomal L27 protein FY139_22500 PF00829 Ribosomal prokaryotic L21 protein FY139_22515 PF03328 HpcH/HpaI aldolase/citrate lyase family FY139_22525 PF00694 Aconitase C-terminal domain FY139_22530 PF00180 Isocitrate/isopropylmalate dehydrogenase FY139_22535 PF03150 Di-haem cytochrome c peroxidase FY139_22540 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FY139_22540 PF07685 CobB/CobQ-like glutamine amidotransferase domain FY139_22545 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FY139_22550 PF01888 CbiD FY139_22555 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FY139_22565 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FY139_22570 PF02571 Precorrin-6x reductase CbiJ/CobK FY139_22575 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FY139_22580 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FY139_22585 PF02570 Precorrin-8X methylmutase FY139_22590 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FY139_22595 PF02514 CobN/Magnesium Chelatase FY139_22600 PF07683 Cobalamin synthesis protein cobW C-terminal domain FY139_22600 PF02492 CobW/HypB/UreG, nucleotide-binding domain FY139_22610 PF12557 Cob(I)alamin adenosyltransferase N terminal FY139_22610 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP FY139_22615 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FY139_22615 PF07685 CobB/CobQ-like glutamine amidotransferase domain FY139_22620 PF03186 CobD/Cbib protein FY139_22625 PF00155 Aminotransferase class I and II FY139_22630 PF13378 Enolase C-terminal domain-like FY139_22630 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FY139_22635 PF05336 L-rhamnose mutarotase FY139_22640 PF01232 Mannitol dehydrogenase Rossmann domain FY139_22640 PF08125 Mannitol dehydrogenase C-terminal domain FY139_22645 PF00107 Zinc-binding dehydrogenase FY139_22645 PF08240 Alcohol dehydrogenase GroES-like domain FY139_22655 PF00248 Aldo/keto reductase family FY139_22665 PF02653 Branched-chain amino acid transport system / permease component FY139_22670 PF00005 ABC transporter FY139_22675 PF07729 FCD domain FY139_22675 PF00392 Bacterial regulatory proteins, gntR family FY139_22680 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus FY139_22680 PF08666 SAF domain FY139_22685 PF02142 MGS-like domain FY139_22685 PF01808 AICARFT/IMPCHase bienzyme FY139_22695 PF01029 NusB family FY139_22695 PF01189 16S rRNA methyltransferase RsmB/F FY139_22700 PF01435 Peptidase family M48 FY139_22710 PF17762 HTH domain found in ParB protein FY139_22710 PF02195 ParB-like nuclease domain FY139_22715 PF13614 AAA domain FY139_22720 PF02527 rRNA small subunit methyltransferase G FY139_22725 PF13932 GidA associated domain FY139_22725 PF01134 Glucose inhibited division protein A FY139_22730 PF01926 50S ribosome-binding GTPase FY139_22730 PF10396 GTP-binding protein TrmE N-terminus FY139_22730 PF12631 MnmE helical domain FY139_22735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FY139_22735 PF07498 Rho termination factor, N-terminal domain FY139_22735 PF07497 Rho termination factor, RNA-binding domain FY139_22740 PF03653 Uncharacterised protein family (UPF0093) FY139_22745 PF01208 Uroporphyrinogen decarboxylase (URO-D) FY139_22750 PF03618 Kinase/pyrophosphorylase FY139_22755 PF02545 Maf-like protein FY139_22760 PF01488 Shikimate / quinate 5-dehydrogenase FY139_22760 PF08501 Shikimate dehydrogenase substrate binding domain FY139_22760 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FY139_22765 PF01121 Dephospho-CoA kinase FY139_22770 PF00929 Exonuclease FY139_22775 PF02556 Preprotein translocase subunit SecB FY139_22780 PF04186 FxsA cytoplasmic membrane protein FY139_22790 PF06725 3D domain FY139_22790 PF03562 MltA specific insert domain FY139_22805 PF00204 DNA gyrase B FY139_22805 PF01751 Toprim domain FY139_22805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_22805 PF00986 DNA gyrase B subunit, carboxyl terminus FY139_22815 PF01557 Fumarylacetoacetate (FAA) hydrolase family FY139_22830 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FY139_22835 PF00291 Pyridoxal-phosphate dependent enzyme FY139_22840 PF00290 Tryptophan synthase alpha chain FY139_22845 PF01039 Carboxyl transferase domain FY139_22850 PF02875 Mur ligase family, glutamate ligase domain FY139_22850 PF08245 Mur ligase middle domain FY139_22855 PF00085 Thioredoxin FY139_22860 PF12705 PD-(D/E)XK nuclease superfamily FY139_22860 PF00580 UvrD/REP helicase N-terminal domain FY139_22860 PF13361 UvrD-like helicase C-terminal domain FY139_22870 PF12804 MobA-like NTP transferase domain FY139_22875 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FY139_22880 PF00512 His Kinase A (phospho-acceptor) domain FY139_22880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_22885 PF05221 S-adenosyl-L-homocysteine hydrolase FY139_22885 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FY139_22890 PF00381 PTS HPr component phosphorylation site FY139_22895 PF03610 PTS system fructose IIA component FY139_22895 PF03830 PTS system sorbose subfamily IIB component FY139_22900 PF07475 HPr Serine kinase C-terminal domain FY139_22900 PF02603 HPr Serine kinase N terminus FY139_22905 PF13756 Stimulus-sensing domain FY139_22905 PF13755 Sensor N-terminal transmembrane domain FY139_22905 PF00512 His Kinase A (phospho-acceptor) domain FY139_22905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_22905 PF00672 HAMP domain FY139_22910 PF00072 Response regulator receiver domain FY139_22910 PF00486 Transcriptional regulatory protein, C terminal FY139_22915 PF01293 Phosphoenolpyruvate carboxykinase FY139_22920 PF00472 RF-1 domain FY139_22925 PF01476 LysM domain FY139_22925 PF04972 BON domain FY139_22930 PF00485 Phosphoribulokinase / Uridine kinase family FY139_22935 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase FY139_22940 PF00977 Histidine biosynthesis protein FY139_22945 PF00977 Histidine biosynthesis protein FY139_22950 PF00117 Glutamine amidotransferase class-I FY139_22960 PF00475 Imidazoleglycerol-phosphate dehydratase FY139_22965 PF00227 Proteasome subunit FY139_22970 PF00004 ATPase family associated with various cellular activities (AAA) FY139_22970 PF10431 C-terminal, D2-small domain, of ClpB protein FY139_22970 PF07724 AAA domain (Cdc48 subfamily) FY139_22980 PF01274 Malate synthase FY139_22995 PF00072 Response regulator receiver domain FY139_23000 PF00512 His Kinase A (phospho-acceptor) domain FY139_23000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_23005 PF00270 DEAD/DEAH box helicase FY139_23005 PF04408 Helicase associated domain (HA2) FY139_23005 PF00271 Helicase conserved C-terminal domain FY139_23005 PF08482 ATP-dependent helicase C-terminal FY139_23045 PF00271 Helicase conserved C-terminal domain FY139_23045 PF00270 DEAD/DEAH box helicase FY139_23045 PF00570 HRDC domain FY139_23045 PF16124 RecQ zinc-binding FY139_23045 PF09382 RQC domain FY139_23050 PF00480 ROK family FY139_23055 PF13407 Periplasmic binding protein domain FY139_23060 PF02653 Branched-chain amino acid transport system / permease component FY139_23065 PF00005 ABC transporter FY139_23070 PF00485 Phosphoribulokinase / Uridine kinase family FY139_23075 PF00462 Glutaredoxin FY139_23080 PF07972 NrdI Flavodoxin like FY139_23085 PF08343 Ribonucleotide reductase N-terminal FY139_23085 PF00317 Ribonucleotide reductase, all-alpha domain FY139_23085 PF02867 Ribonucleotide reductase, barrel domain FY139_23090 PF00268 Ribonucleotide reductase, small chain FY139_23100 PF02463 RecF/RecN/SMC N terminal domain FY139_23105 PF00581 Rhodanese-like domain FY139_23105 PF00899 ThiF family FY139_23120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FY139_23120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FY139_23130 PF00294 pfkB family carbohydrate kinase FY139_23140 PF08468 Methyltransferase small domain N-terminal FY139_23140 PF05175 Methyltransferase small domain FY139_23145 PF03725 3' exoribonuclease family, domain 2 FY139_23145 PF00013 KH domain FY139_23145 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FY139_23145 PF01138 3' exoribonuclease family, domain 1 FY139_23145 PF00575 S1 RNA binding domain FY139_23150 PF00312 Ribosomal protein S15 FY139_23155 PF16198 tRNA pseudouridylate synthase B C-terminal domain FY139_23155 PF01509 TruB family pseudouridylate synthase (N terminal domain) FY139_23155 PF09157 Pseudouridine synthase II TruB, C-terminal FY139_23160 PF02033 Ribosome-binding factor A FY139_23165 PF04760 Translation initiation factor IF-2, N-terminal region FY139_23165 PF00009 Elongation factor Tu GTP binding domain FY139_23165 PF03144 Elongation factor Tu domain 2 FY139_23165 PF11987 Translation-initiation factor 2 FY139_23165 PF08364 Bacterial translation initiation factor IF-2 associated region FY139_23175 PF00575 S1 RNA binding domain FY139_23175 PF08529 NusA N-terminal domain FY139_23175 PF13184 NusA-like KH domain FY139_23180 PF17384 RimP C-terminal SH3 domain FY139_23180 PF02576 RimP N-terminal domain FY139_23185 PF05977 Transmembrane secretion effector FY139_23195 PF13406 Transglycosylase SLT domain FY139_23200 PF02132 RecR protein FY139_23200 PF13662 Toprim domain FY139_23210 PF02575 YbaB/EbfC DNA-binding family FY139_23215 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding FY139_23215 PF12170 DNA polymerase III tau subunit V interacting with alpha FY139_23215 PF12169 DNA polymerase III subunits gamma and tau domain III FY139_23230 PF00293 NUDIX domain FY139_23230 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain FY139_23230 PF09297 NADH pyrophosphatase zinc ribbon domain FY139_23235 PF00800 Prephenate dehydratase FY139_23235 PF01817 Chorismate mutase type II FY139_23240 PF02348 Cytidylyltransferase FY139_23245 PF00034 Cytochrome c FY139_23250 PF02397 Bacterial sugar transferase FY139_23255 PF00912 Transglycosylase FY139_23255 PF00905 Penicillin binding protein transpeptidase domain FY139_23260 PF04073 Aminoacyl-tRNA editing domain FY139_23265 PF00313 'Cold-shock' DNA-binding domain FY139_23270 PF07687 Peptidase dimerisation domain FY139_23270 PF01546 Peptidase family M20/M25/M40 FY139_23275 PF01047 MarR family FY139_23280 PF01367 5'-3' exonuclease, C-terminal SAM fold FY139_23280 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FY139_23280 PF00476 DNA polymerase family A FY139_23280 PF01612 3'-5' exonuclease FY139_23285 PF01783 Ribosomal L32p protein family FY139_23290 PF02743 Cache domain FY139_23290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_23290 PF00512 His Kinase A (phospho-acceptor) domain FY139_23295 PF02954 Bacterial regulatory protein, Fis family FY139_23295 PF00072 Response regulator receiver domain FY139_23295 PF00158 Sigma-54 interaction domain FY139_23300 PF03401 Tripartite tricarboxylate transporter family receptor FY139_23305 PF07331 Tripartite tricarboxylate transporter TctB family FY139_23310 PF01970 Tripartite tricarboxylate transporter TctA family FY139_23315 PF04102 SlyX FY139_23325 PF00226 DnaJ domain FY139_23325 PF01556 DnaJ C terminal domain FY139_23325 PF00684 DnaJ central domain FY139_23330 PF00012 Hsp70 protein FY139_23345 PF01625 Peptide methionine sulfoxide reductase FY139_23350 PF02608 ABC transporter substrate-binding protein PnrA-like FY139_23355 PF00005 ABC transporter FY139_23360 PF02653 Branched-chain amino acid transport system / permease component FY139_23365 PF02653 Branched-chain amino acid transport system / permease component FY139_23370 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FY139_23375 PF01048 Phosphorylase superfamily FY139_23380 PF01791 DeoC/LacD family aldolase FY139_23385 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain FY139_23385 PF02885 Glycosyl transferase family, helical bundle domain FY139_23385 PF00591 Glycosyl transferase family, a/b domain FY139_23400 PF00962 Adenosine/AMP deaminase FY139_23405 PF01676 Metalloenzyme superfamily FY139_23415 PF03626 Prokaryotic Cytochrome C oxidase subunit IV FY139_23420 PF00510 Cytochrome c oxidase subunit III FY139_23425 PF00115 Cytochrome C and Quinol oxidase polypeptide I FY139_23430 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FY139_23430 PF06481 COX Aromatic Rich Motif FY139_23435 PF00083 Sugar (and other) transporter FY139_23435 PF07690 Major Facilitator Superfamily FY139_23440 PF04898 Glutamate synthase central domain FY139_23440 PF00310 Glutamine amidotransferases class-II FY139_23440 PF01645 Conserved region in glutamate synthase FY139_23440 PF01493 GXGXG motif FY139_23445 PF00667 FAD binding domain FY139_23445 PF00258 Flavodoxin FY139_23445 PF00175 Oxidoreductase NAD-binding domain FY139_23465 PF00109 Beta-ketoacyl synthase, N-terminal domain FY139_23465 PF02801 Beta-ketoacyl synthase, C-terminal domain FY139_23470 PF07977 FabA-like domain FY139_23480 PF03458 UPF0126 domain FY139_23490 PF06912 Protein of unknown function (DUF1275) FY139_23500 PF00528 Binding-protein-dependent transport system inner membrane component FY139_23505 PF00005 ABC transporter FY139_23510 PF00392 Bacterial regulatory proteins, gntR family FY139_23510 PF07702 UTRA domain FY139_23515 PF01618 MotA/TolQ/ExbB proton channel family FY139_23520 PF02472 Biopolymer transport protein ExbD/TolR FY139_23530 PF02615 Malate/L-lactate dehydrogenase FY139_23545 PF00625 Guanylate kinase FY139_23550 PF07969 Amidohydrolase family FY139_23555 PF06299 Protein of unknown function (DUF1045) FY139_23560 PF00528 Binding-protein-dependent transport system inner membrane component FY139_23565 PF00528 Binding-protein-dependent transport system inner membrane component FY139_23575 PF00005 ABC transporter FY139_23585 PF00005 ABC transporter FY139_23590 PF00005 ABC transporter FY139_23595 PF06007 Phosphonate metabolism protein PhnJ FY139_23600 PF05861 Bacterial phosphonate metabolism protein (PhnI) FY139_23605 PF05845 Bacterial phosphonate metabolism protein (PhnH) FY139_23610 PF06754 Phosphonate metabolism protein PhnG FY139_23615 PF00392 Bacterial regulatory proteins, gntR family FY139_23615 PF07702 UTRA domain FY139_23620 PF01113 Dihydrodipicolinate reductase, N-terminus FY139_23620 PF05173 Dihydrodipicolinate reductase, C-terminus FY139_23625 PF02685 Glucokinase FY139_23630 PF02142 MGS-like domain FY139_23635 PF03411 Penicillin-insensitive murein endopeptidase FY139_23640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_23645 PF00528 Binding-protein-dependent transport system inner membrane component FY139_23650 PF00528 Binding-protein-dependent transport system inner membrane component FY139_23650 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_23655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_23655 PF00005 ABC transporter FY139_23660 PF01266 FAD dependent oxidoreductase FY139_23665 PF00120 Glutamine synthetase, catalytic domain FY139_23670 PF01266 FAD dependent oxidoreductase FY139_23680 PF00528 Binding-protein-dependent transport system inner membrane component FY139_23685 PF00005 ABC transporter FY139_23690 PF00528 Binding-protein-dependent transport system inner membrane component FY139_23695 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FY139_23705 PF02082 Transcriptional regulator FY139_23710 PF13416 Bacterial extracellular solute-binding protein FY139_23720 PF05987 Bacterial protein of unknown function (DUF898) FY139_23725 PF00171 Aldehyde dehydrogenase family FY139_23730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_23730 PF03466 LysR substrate binding domain FY139_23735 PF00892 EamA-like transporter family FY139_23750 PF00877 NlpC/P60 family FY139_23760 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FY139_23760 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FY139_23765 PF02789 Cytosol aminopeptidase family, N-terminal domain FY139_23765 PF00883 Cytosol aminopeptidase family, catalytic domain FY139_23785 PF00437 Type II/IV secretion system protein FY139_23800 PF04972 BON domain FY139_23800 PF00263 Bacterial type II and III secretion system protein FY139_23800 PF13629 Pilus formation protein N terminal region FY139_23840 PF00117 Glutamine amidotransferase class-I FY139_23845 PF07411 Domain of unknown function (DUF1508) FY139_23850 PF01183 Glycosyl hydrolases family 25 FY139_23855 PF00892 EamA-like transporter family FY139_23860 PF00155 Aminotransferase class I and II FY139_23860 PF00392 Bacterial regulatory proteins, gntR family FY139_23875 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_23890 PF00009 Elongation factor Tu GTP binding domain FY139_23890 PF03144 Elongation factor Tu domain 2 FY139_23890 PF06421 GTP-binding protein LepA C-terminus FY139_23890 PF00679 Elongation factor G C-terminus FY139_23895 PF00795 Carbon-nitrogen hydrolase FY139_23925 PF02311 AraC-like ligand binding domain FY139_23925 PF12833 Helix-turn-helix domain FY139_23930 PF03480 Bacterial extracellular solute-binding protein, family 7 FY139_23955 PF05198 Translation initiation factor IF-3, N-terminal domain FY139_23955 PF00707 Translation initiation factor IF-3, C-terminal domain FY139_23960 PF01632 Ribosomal protein L35 FY139_23965 PF00453 Ribosomal protein L20 FY139_23975 PF01409 tRNA synthetases class II core domain (F) FY139_23975 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FY139_23980 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FY139_23980 PF01588 Putative tRNA binding domain FY139_23980 PF03147 Ferredoxin-fold anticodon binding domain FY139_23980 PF03484 tRNA synthetase B5 domain FY139_23980 PF03483 B3/4 domain FY139_23985 PF00248 Aldo/keto reductase family FY139_23990 PF03466 LysR substrate binding domain FY139_23990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_24000 PF00248 Aldo/keto reductase family FY139_24005 PF12833 Helix-turn-helix domain FY139_24005 PF01965 DJ-1/PfpI family FY139_24015 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_24015 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_24030 PF13742 OB-fold nucleic acid binding domain FY139_24030 PF02601 Exonuclease VII, large subunit FY139_24035 PF13378 Enolase C-terminal domain-like FY139_24035 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FY139_24040 PF07729 FCD domain FY139_24040 PF00392 Bacterial regulatory proteins, gntR family FY139_24045 PF01047 MarR family FY139_24055 PF02073 Thermophilic metalloprotease (M29) FY139_24060 PF04073 Aminoacyl-tRNA editing domain FY139_24065 PF03960 ArsC family FY139_24080 PF00440 Bacterial regulatory proteins, tetR family FY139_24090 PF00117 Glutamine amidotransferase class-I FY139_24090 PF00958 GMP synthase C terminal domain FY139_24105 PF03073 TspO/MBR family FY139_24130 PF01029 NusB family FY139_24130 PF01189 16S rRNA methyltransferase RsmB/F FY139_24135 PF03330 Lytic transglycolase FY139_24145 PF08331 Domain of unknown function (DUF1730) FY139_24150 PF00043 Glutathione S-transferase, C-terminal domain FY139_24150 PF13417 Glutathione S-transferase, N-terminal domain FY139_24155 PF02673 Bacitracin resistance protein BacA FY139_24170 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FY139_24180 PF13649 Methyltransferase domain FY139_24185 PF02768 DNA polymerase III beta subunit, C-terminal domain FY139_24185 PF02767 DNA polymerase III beta subunit, central domain FY139_24185 PF00712 DNA polymerase III beta subunit, N-terminal domain FY139_24190 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FY139_24195 PF02021 Uncharacterised protein family UPF0102 FY139_24200 PF12464 Maltose acetyltransferase FY139_24200 PF14602 Hexapeptide repeat of succinyl-transferase FY139_24205 PF13416 Bacterial extracellular solute-binding protein FY139_24210 PF00528 Binding-protein-dependent transport system inner membrane component FY139_24215 PF00528 Binding-protein-dependent transport system inner membrane component FY139_24220 PF00005 ABC transporter FY139_24230 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FY139_24230 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FY139_24235 PF01078 Magnesium chelatase, subunit ChlI FY139_24235 PF13335 Magnesium chelatase, subunit ChlI C-terminal FY139_24240 PF00291 Pyridoxal-phosphate dependent enzyme FY139_24245 PF01810 LysE type translocator FY139_24250 PF00692 dUTPase FY139_24255 PF00009 Elongation factor Tu GTP binding domain FY139_24255 PF03144 Elongation factor Tu domain 2 FY139_24255 PF16658 Class II release factor RF3, C-terminal domain FY139_24260 PF04127 DNA / pantothenate metabolism flavoprotein FY139_24260 PF02441 Flavoprotein FY139_24275 PF03109 ABC1 family FY139_24280 PF01209 ubiE/COQ5 methyltransferase family FY139_24285 PF06827 Zinc finger found in FPG and IleRS FY139_24285 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FY139_24285 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FY139_24290 PF00378 Enoyl-CoA hydratase/isomerase FY139_24295 PF01649 Ribosomal protein S20 FY139_24300 PF00376 MerR family regulatory protein FY139_24300 PF13614 AAA domain FY139_24305 PF07506 RepB plasmid partitioning protein FY139_24305 PF02195 ParB-like nuclease domain FY139_24310 PF11800 Replication protein C C-terminal region FY139_24310 PF03428 Replication protein C N-terminal domain FY139_24320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_24320 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_24325 PF00005 ABC transporter FY139_24330 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY139_24335 PF00356 Bacterial regulatory proteins, lacI family FY139_24370 PF00487 Fatty acid desaturase FY139_24380 PF00313 'Cold-shock' DNA-binding domain FY139_24420 PF07516 SecA Wing and Scaffold domain FY139_24420 PF01043 SecA preprotein cross-linking domain FY139_24420 PF07517 SecA DEAD-like domain FY139_24420 PF02810 SEC-C motif FY139_24460 PF13087 AAA domain FY139_24460 PF13091 PLD-like domain FY139_24495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_24495 PF00512 His Kinase A (phospho-acceptor) domain FY139_24495 PF00989 PAS fold FY139_24500 PF00005 ABC transporter FY139_24500 PF00664 ABC transporter transmembrane region FY139_24510 PF01022 Bacterial regulatory protein, arsR family FY139_24540 PF12833 Helix-turn-helix domain FY139_24540 PF01965 DJ-1/PfpI family FY139_24545 PF07690 Major Facilitator Superfamily FY139_24550 PF07690 Major Facilitator Superfamily FY139_24555 PF01047 MarR family FY139_24570 PF07690 Major Facilitator Superfamily FY139_24600 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment FY139_24605 PF00561 alpha/beta hydrolase fold FY139_24615 PF04752 ChaC-like protein FY139_24620 PF03466 LysR substrate binding domain FY139_24620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_24635 PF00011 Hsp20/alpha crystallin family FY139_24680 PF04956 TrbC/VIRB2 family FY139_24685 PF05101 Type IV secretory pathway, VirB3-like protein FY139_24690 PF03135 CagE, TrbE, VirB family, component of type IV transporter system FY139_24695 PF07996 Type IV secretion system proteins FY139_24705 PF04610 TrbL/VirB6 plasmid conjugal transfer protein FY139_24715 PF04335 VirB8 protein FY139_24720 PF03524 Conjugal transfer protein FY139_24725 PF03743 Bacterial conjugation TrbI-like protein FY139_24730 PF00437 Type II/IV secretion system protein FY139_24750 PF03230 Antirestriction protein FY139_24830 PF05406 WGR domain FY139_24845 PF02534 Type IV secretory system Conjugative DNA transfer FY139_24860 PF17841 BID domain of Bartonella effector protein (Bep) FY139_24860 PF03389 MobA/MobL family FY139_24860 PF01443 Viral (Superfamily 1) RNA helicase FY139_24865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_24865 PF03466 LysR substrate binding domain FY139_24890 PF03472 Autoinducer binding domain FY139_24890 PF00196 Bacterial regulatory proteins, luxR family FY139_24895 PF00765 Autoinducer synthase FY139_24905 PF00486 Transcriptional regulatory protein, C terminal FY139_24905 PF00072 Response regulator receiver domain FY139_24930 PF00795 Carbon-nitrogen hydrolase FY139_24940 PF02668 Taurine catabolism dioxygenase TauD, TfdA family FY139_24945 PF08402 TOBE domain FY139_24945 PF00005 ABC transporter FY139_24950 PF00528 Binding-protein-dependent transport system inner membrane component FY139_24955 PF00528 Binding-protein-dependent transport system inner membrane component FY139_24970 PF13635 Domain of unknown function (DUF4143) FY139_24970 PF13173 AAA domain FY139_24975 PF00289 Biotin carboxylase, N-terminal domain FY139_24975 PF00682 HMGL-like FY139_24975 PF02436 Conserved carboxylase domain FY139_24975 PF00364 Biotin-requiring enzyme FY139_24975 PF02785 Biotin carboxylase C-terminal domain FY139_24975 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FY139_24980 PF14552 Tautomerase enzyme FY139_24985 PF03328 HpcH/HpaI aldolase/citrate lyase family FY139_24990 PF01557 Fumarylacetoacetate (FAA) hydrolase family FY139_25000 PF09339 IclR helix-turn-helix domain FY139_25000 PF01614 Bacterial transcriptional regulator FY139_25010 PF00005 ABC transporter FY139_25015 PF00005 ABC transporter FY139_25025 PF11862 Domain of unknown function (DUF3382) FY139_25025 PF02653 Branched-chain amino acid transport system / permease component FY139_25045 PF08502 LeuA allosteric (dimerisation) domain FY139_25045 PF00682 HMGL-like FY139_25050 PF00528 Binding-protein-dependent transport system inner membrane component FY139_25055 PF00528 Binding-protein-dependent transport system inner membrane component FY139_25060 PF00480 ROK family FY139_25060 PF01047 MarR family FY139_25065 PF00128 Alpha amylase, catalytic domain FY139_25070 PF01546 Peptidase family M20/M25/M40 FY139_25070 PF07687 Peptidase dimerisation domain FY139_25075 PF01261 Xylose isomerase-like TIM barrel FY139_25080 PF00005 ABC transporter FY139_25080 PF17912 MalK OB fold domain FY139_25090 PF00480 ROK family FY139_25095 PF00528 Binding-protein-dependent transport system inner membrane component FY139_25100 PF00528 Binding-protein-dependent transport system inner membrane component FY139_25105 PF01547 Bacterial extracellular solute-binding protein FY139_25110 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY139_25110 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY139_25125 PF02423 Ornithine cyclodeaminase/mu-crystallin family FY139_25140 PF00005 ABC transporter FY139_25145 PF00528 Binding-protein-dependent transport system inner membrane component FY139_25150 PF00528 Binding-protein-dependent transport system inner membrane component FY139_25155 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY139_25160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_25160 PF00005 ABC transporter FY139_25165 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_25165 PF00005 ABC transporter FY139_25170 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_25170 PF00528 Binding-protein-dependent transport system inner membrane component FY139_25175 PF00528 Binding-protein-dependent transport system inner membrane component FY139_25180 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_25185 PF03737 Aldolase/RraA FY139_25190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_25190 PF03466 LysR substrate binding domain FY139_25195 PF02423 Ornithine cyclodeaminase/mu-crystallin family FY139_25200 PF01546 Peptidase family M20/M25/M40 FY139_25200 PF07687 Peptidase dimerisation domain FY139_25205 PF01156 Inosine-uridine preferring nucleoside hydrolase FY139_25225 PF00857 Isochorismatase family FY139_25240 PF17954 Quercetinase C-terminal cupin domain FY139_25240 PF02678 Pirin FY139_25245 PF03358 NADPH-dependent FMN reductase FY139_25250 PF00561 alpha/beta hydrolase fold FY139_25270 PF13533 Biotin-lipoyl like FY139_25275 PF03466 LysR substrate binding domain FY139_25275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_25280 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FY139_25285 PF03466 LysR substrate binding domain FY139_25285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_25300 PF00857 Isochorismatase family FY139_25305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_25305 PF03466 LysR substrate binding domain FY139_25315 PF03551 Transcriptional regulator PadR-like family FY139_25375 PF02653 Branched-chain amino acid transport system / permease component FY139_25380 PF00005 ABC transporter FY139_25385 PF12399 Branched-chain amino acid ATP-binding cassette transporter FY139_25385 PF00005 ABC transporter FY139_25395 PF14525 AraC-binding-like domain FY139_25395 PF12833 Helix-turn-helix domain FY139_25455 PF07729 FCD domain FY139_25455 PF00392 Bacterial regulatory proteins, gntR family FY139_25460 PF04444 Catechol dioxygenase N terminus FY139_25460 PF00775 Dioxygenase FY139_25465 PF01557 Fumarylacetoacetate (FAA) hydrolase family FY139_25470 PF03328 HpcH/HpaI aldolase/citrate lyase family FY139_25480 PF01571 Aminomethyltransferase folate-binding domain FY139_25485 PF02219 Methylenetetrahydrofolate reductase FY139_25490 PF00551 Formyl transferase FY139_25500 PF08240 Alcohol dehydrogenase GroES-like domain FY139_25500 PF00107 Zinc-binding dehydrogenase FY139_25510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FY139_25510 PF02770 Acyl-CoA dehydrogenase, middle domain FY139_25510 PF12806 Acetyl-CoA dehydrogenase C-terminal like FY139_25510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FY139_25515 PF00378 Enoyl-CoA hydratase/isomerase FY139_25520 PF13193 AMP-binding enzyme C-terminal domain FY139_25520 PF00501 AMP-binding enzyme FY139_25525 PF00171 Aldehyde dehydrogenase family FY139_25530 PF07690 Major Facilitator Superfamily FY139_25545 PF00990 Diguanylate cyclase, GGDEF domain FY139_25545 PF17158 Membrane-associated sensor, integral membrane domain FY139_25565 PF12802 MarR family FY139_25575 PF13458 Periplasmic binding protein FY139_25580 PF02653 Branched-chain amino acid transport system / permease component FY139_25590 PF12399 Branched-chain amino acid ATP-binding cassette transporter FY139_25590 PF00005 ABC transporter FY139_25595 PF00005 ABC transporter FY139_25605 PF00171 Aldehyde dehydrogenase family FY139_25610 PF01546 Peptidase family M20/M25/M40 FY139_25610 PF07687 Peptidase dimerisation domain FY139_25615 PF00202 Aminotransferase class-III FY139_25620 PF00171 Aldehyde dehydrogenase family FY139_25625 PF08450 SMP-30/Gluconolactonase/LRE-like region FY139_25630 PF01261 Xylose isomerase-like TIM barrel FY139_25635 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FY139_25635 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FY139_25655 PF01979 Amidohydrolase family FY139_25660 PF00480 ROK family FY139_25660 PF01325 Iron dependent repressor, N-terminal DNA binding domain FY139_25665 PF02653 Branched-chain amino acid transport system / permease component FY139_25670 PF13407 Periplasmic binding protein domain FY139_25675 PF00005 ABC transporter FY139_25695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_25695 PF03466 LysR substrate binding domain FY139_25700 PF07690 Major Facilitator Superfamily FY139_25710 PF00135 Carboxylesterase family FY139_25720 PF00135 Carboxylesterase family FY139_25730 PF00005 ABC transporter FY139_25735 PF02653 Branched-chain amino acid transport system / permease component FY139_25740 PF00135 Carboxylesterase family FY139_25750 PF04303 PrpF protein FY139_25755 PF03737 Aldolase/RraA FY139_25760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FY139_25765 PF02585 GlcNAc-PI de-N-acetylase FY139_25780 PF00005 ABC transporter FY139_25780 PF12399 Branched-chain amino acid ATP-binding cassette transporter FY139_25785 PF00005 ABC transporter FY139_25790 PF13458 Periplasmic binding protein FY139_25800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_25800 PF03466 LysR substrate binding domain FY139_25805 PF01614 Bacterial transcriptional regulator FY139_25805 PF09339 IclR helix-turn-helix domain FY139_25815 PF13378 Enolase C-terminal domain-like FY139_25815 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FY139_25825 PF00005 ABC transporter FY139_25825 PF08402 TOBE domain FY139_25830 PF00528 Binding-protein-dependent transport system inner membrane component FY139_25835 PF00528 Binding-protein-dependent transport system inner membrane component FY139_25845 PF07690 Major Facilitator Superfamily FY139_25880 PF03928 Haem-degrading FY139_25900 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_25905 PF00528 Binding-protein-dependent transport system inner membrane component FY139_25910 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_25910 PF00528 Binding-protein-dependent transport system inner membrane component FY139_25915 PF00005 ABC transporter FY139_25915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_25925 PF00296 Luciferase-like monooxygenase FY139_25935 PF00528 Binding-protein-dependent transport system inner membrane component FY139_25940 PF00005 ABC transporter FY139_25945 PF05199 GMC oxidoreductase FY139_25945 PF00732 GMC oxidoreductase FY139_25950 PF00171 Aldehyde dehydrogenase family FY139_25965 PF00392 Bacterial regulatory proteins, gntR family FY139_25965 PF07729 FCD domain FY139_25970 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_25970 PF04324 BFD-like [2Fe-2S] binding domain FY139_25980 PF01266 FAD dependent oxidoreductase FY139_25990 PF03447 Homoserine dehydrogenase, NAD binding domain FY139_25990 PF01958 Domain of unknown function DUF108 FY139_25995 PF01042 Endoribonuclease L-PSP FY139_26000 PF01548 Transposase FY139_26000 PF02371 Transposase IS116/IS110/IS902 family FY139_26040 PF00857 Isochorismatase family FY139_26050 PF00440 Bacterial regulatory proteins, tetR family FY139_26055 PF00005 ABC transporter FY139_26060 PF01032 FecCD transport family FY139_26065 PF01032 FecCD transport family FY139_26075 PF10518 TAT (twin-arginine translocation) pathway signal sequence FY139_26075 PF07732 Multicopper oxidase FY139_26075 PF07731 Multicopper oxidase FY139_26075 PF00394 Multicopper oxidase FY139_26080 PF00591 Glycosyl transferase family, a/b domain FY139_26080 PF02885 Glycosyl transferase family, helical bundle domain FY139_26085 PF07715 TonB-dependent Receptor Plug Domain FY139_26085 PF00593 TonB dependent receptor FY139_26120 PF03551 Transcriptional regulator PadR-like family FY139_26155 PF00394 Multicopper oxidase FY139_26155 PF07731 Multicopper oxidase FY139_26155 PF07732 Multicopper oxidase FY139_26175 PF01209 ubiE/COQ5 methyltransferase family FY139_26190 PF04079 Segregation and condensation complex subunit ScpB FY139_26200 PF00589 Phage integrase family FY139_26210 PF13614 AAA domain FY139_26215 PF02195 ParB-like nuclease domain FY139_26215 PF07506 RepB plasmid partitioning protein FY139_26220 PF11800 Replication protein C C-terminal region FY139_26220 PF03428 Replication protein C N-terminal domain FY139_26225 PF00239 Resolvase, N terminal domain FY139_26230 PF11972 HTH DNA binding domain FY139_26230 PF07756 Protein of unknown function (DUF1612) FY139_26250 PF00239 Resolvase, N terminal domain FY139_26250 PF02796 Helix-turn-helix domain of resolvase FY139_26255 PF07690 Major Facilitator Superfamily FY139_26265 PF08808 RES domain FY139_26300 PF02899 Phage integrase, N-terminal SAM-like domain FY139_26300 PF00589 Phage integrase family FY139_26305 PF00293 NUDIX domain FY139_26320 PF13018 Extended Signal Peptide of Type V secretion system FY139_26320 PF02661 Fic/DOC family FY139_26320 PF13332 Hemagglutinin repeat FY139_26320 PF05860 haemagglutination activity domain FY139_26320 PF03543 Yersinia/Haemophilus virulence surface antigen FY139_26345 PF17762 HTH domain found in ParB protein FY139_26345 PF02195 ParB-like nuclease domain FY139_26370 PF03831 PhnA domain FY139_26370 PF08274 PhnA Zinc-Ribbon FY139_26390 PF01810 LysE type translocator FY139_26440 PF00293 NUDIX domain FY139_26455 PF05284 Protein of unknown function (DUF736) FY139_26460 PF00216 Bacterial DNA-binding protein FY139_26480 PF02534 Type IV secretory system Conjugative DNA transfer FY139_26485 PF06412 Conjugal transfer protein TraD FY139_26490 PF07820 TraC-like protein FY139_26495 PF01443 Viral (Superfamily 1) RNA helicase FY139_26495 PF17841 BID domain of Bartonella effector protein (Bep) FY139_26495 PF03389 MobA/MobL family FY139_26500 PF10502 Signal peptidase, peptidase S26 FY139_26505 PF00795 Carbon-nitrogen hydrolase FY139_26510 PF06871 TraH_2 FY139_26515 PF09228 Prokaryotic Transcriptional repressor TraM FY139_26520 PF08447 PAS fold FY139_26520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY139_26520 PF13426 PAS domain FY139_26530 PF03472 Autoinducer binding domain FY139_26530 PF00196 Bacterial regulatory proteins, luxR family FY139_26535 PF00128 Alpha amylase, catalytic domain FY139_26540 PF02690 Na+/Pi-cotransporter FY139_26550 PF00455 DeoR C terminal sensor domain FY139_26550 PF08220 DeoR-like helix-turn-helix domain FY139_26555 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_26560 PF00005 ABC transporter FY139_26560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_26565 PF00005 ABC transporter FY139_26565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_26570 PF00528 Binding-protein-dependent transport system inner membrane component FY139_26575 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_26575 PF00528 Binding-protein-dependent transport system inner membrane component FY139_26580 PF03009 Glycerophosphoryl diester phosphodiesterase family FY139_26585 PF00459 Inositol monophosphatase family FY139_26610 PF00067 Cytochrome P450 FY139_26615 PF00067 Cytochrome P450 FY139_26630 PF06903 VirK protein FY139_26665 PF00512 His Kinase A (phospho-acceptor) domain FY139_26665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY139_26670 PF01464 Transglycosylase SLT domain FY139_26675 PF04956 TrbC/VIRB2 family FY139_26680 PF05101 Type IV secretory pathway, VirB3-like protein FY139_26685 PF03135 CagE, TrbE, VirB family, component of type IV transporter system FY139_26695 PF04610 TrbL/VirB6 plasmid conjugal transfer protein FY139_26700 PF17413 Outer membrane lipoprotein virB7 FY139_26705 PF04335 VirB8 protein FY139_26710 PF03524 Conjugal transfer protein FY139_26715 PF03743 Bacterial conjugation TrbI-like protein FY139_26720 PF00437 Type II/IV secretion system protein FY139_26725 PF00486 Transcriptional regulatory protein, C terminal FY139_26725 PF00072 Response regulator receiver domain FY139_26730 PF07181 VirC2 protein FY139_26735 PF07015 VirC1 protein FY139_26740 PF07328 T-DNA border endonuclease VirD1 FY139_26745 PF03432 Relaxase/Mobilisation nuclease domain FY139_26755 PF02534 Type IV secretory system Conjugative DNA transfer FY139_26775 PF12189 Single-strand DNA-binding protein FY139_26780 PF07229 VirE2 FY139_26800 PF05717 IS66 Orf2 like protein FY139_26805 PF03472 Autoinducer binding domain FY139_26805 PF00196 Bacterial regulatory proteins, luxR family FY139_26820 PF00459 Inositol monophosphatase family FY139_26855 PF02027 RolB/RolC glucosidase family FY139_26860 PF01425 Amidase FY139_26865 PF01593 Flavin containing amine oxidoreductase FY139_26865 PF02027 RolB/RolC glucosidase family FY139_26875 PF02027 RolB/RolC glucosidase family FY139_26880 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain FY139_26890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY139_26890 PF00005 ABC transporter FY139_26895 PF00528 Binding-protein-dependent transport system inner membrane component FY139_26895 PF12911 N-terminal TM domain of oligopeptide transport permease C FY139_26900 PF00528 Binding-protein-dependent transport system inner membrane component FY139_26905 PF01266 FAD dependent oxidoreductase FY139_26910 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY139_26910 PF17806 Sarcosine oxidase A3 domain FY139_26920 PF01266 FAD dependent oxidoreductase FY139_26925 PF03466 LysR substrate binding domain FY139_26925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_26930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY139_26935 PF01968 Hydantoinase/oxoprolinase FY139_26935 PF05378 Hydantoinase/oxoprolinase N-terminal region FY139_26945 PF00710 Asparaginase, N-terminal FY139_26945 PF17763 Glutaminase/Asparaginase C-terminal domain FY139_26950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY139_26950 PF03466 LysR substrate binding domain FY139_26960 PF00528 Binding-protein-dependent transport system inner membrane component FY139_26970 PF08402 TOBE domain FY139_26970 PF00005 ABC transporter FY139_26980 PF03743 Bacterial conjugation TrbI-like protein FY139_26990 PF03524 Conjugal transfer protein FY139_26995 PF04335 VirB8 protein FY139_27000 PF04610 TrbL/VirB6 plasmid conjugal transfer protein FY139_27005 PF10907 Protein of unknown function (DUF2749) FY139_27015 PF03135 CagE, TrbE, VirB family, component of type IV transporter system FY139_27020 PF05101 Type IV secretory pathway, VirB3-like protein FY139_27025 PF04956 TrbC/VIRB2 family FY139_27030 PF00437 Type II/IV secretion system protein FY139_27035 PF00765 Autoinducer synthase