locus-tag class description Avi_0001 PF03618 Kinase/pyrophosphorylase Avi_0002 PF02545 Maf-like protein Avi_0004 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Avi_0004 PF01488 Shikimate / quinate 5-dehydrogenase Avi_0004 PF08501 Shikimate dehydrogenase substrate binding domain Avi_0005 PF01121 Dephospho-CoA kinase Avi_0006 PF00929 Exonuclease Avi_0007 PF02556 Preprotein translocase subunit SecB Avi_0008 PF04186 FxsA cytoplasmic membrane protein Avi_0010 PF06725 3D domain Avi_0010 PF03562 MltA specific insert domain Avi_0013 PF00986 DNA gyrase B subunit, carboxyl terminus Avi_0013 PF01751 Toprim domain Avi_0013 PF00204 DNA gyrase B Avi_0013 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0019 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Avi_0020 PF00291 Pyridoxal-phosphate dependent enzyme Avi_0021 PF00290 Tryptophan synthase alpha chain Avi_0022 PF01039 Carboxyl transferase domain Avi_0024 PF08245 Mur ligase middle domain Avi_0024 PF02875 Mur ligase family, glutamate ligase domain Avi_0028 PF00085 Thioredoxin Avi_0031 PF00004 ATPase family associated with various cellular activities (AAA) Avi_0031 PF07724 AAA domain (Cdc48 subfamily) Avi_0031 PF10431 C-terminal, D2-small domain, of ClpB protein Avi_0032 PF00227 Proteasome subunit Avi_0033 PF00475 Imidazoleglycerol-phosphate dehydratase Avi_0035 PF00117 Glutamine amidotransferase class-I Avi_0036 PF00977 Histidine biosynthesis protein Avi_0037 PF00977 Histidine biosynthesis protein Avi_0038 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Avi_0039 PF00485 Phosphoribulokinase / Uridine kinase family Avi_0041 PF00472 RF-1 domain Avi_0042 PF01293 Phosphoenolpyruvate carboxykinase Avi_0044 PF00072 Response regulator receiver domain Avi_0044 PF00486 Transcriptional regulatory protein, C terminal Avi_0045 PF13755 Sensor N-terminal transmembrane domain Avi_0045 PF00512 His Kinase A (phospho-acceptor) domain Avi_0045 PF00672 HAMP domain Avi_0045 PF13756 Stimulus-sensing domain Avi_0045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0047 PF03610 PTS system fructose IIA component Avi_0047 PF03830 PTS system sorbose subfamily IIB component Avi_0048 PF00381 PTS HPr component phosphorylation site Avi_0049 PF05221 S-adenosyl-L-homocysteine hydrolase Avi_0049 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Avi_0050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0050 PF00512 His Kinase A (phospho-acceptor) domain Avi_0051 PF01636 Phosphotransferase enzyme family Avi_0053 PF12804 MobA-like NTP transferase domain Avi_0055 PF12705 PD-(D/E)XK nuclease superfamily Avi_0056 PF13361 UvrD-like helicase C-terminal domain Avi_0056 PF12705 PD-(D/E)XK nuclease superfamily Avi_0056 PF00580 UvrD/REP helicase N-terminal domain Avi_0057 PF01274 Malate synthase Avi_0063 PF00072 Response regulator receiver domain Avi_0064 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0064 PF00512 His Kinase A (phospho-acceptor) domain Avi_0067 PF00271 Helicase conserved C-terminal domain Avi_0067 PF08482 ATP-dependent helicase C-terminal Avi_0067 PF00270 DEAD/DEAH box helicase Avi_0067 PF04408 Helicase associated domain (HA2) Avi_0068 PF02423 Ornithine cyclodeaminase/mu-crystallin family Avi_0070 PF07690 Major Facilitator Superfamily Avi_0071 PF00701 Dihydrodipicolinate synthetase family Avi_0072 PF00356 Bacterial regulatory proteins, lacI family Avi_0074 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_0074 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Avi_0076 PF00294 pfkB family carbohydrate kinase Avi_0077 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Avi_0077 PF00205 Thiamine pyrophosphate enzyme, central domain Avi_0077 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Avi_0078 PF01261 Xylose isomerase-like TIM barrel Avi_0080 PF04962 KduI/IolB family Avi_0085 PF00106 short chain dehydrogenase Avi_0089 PF04545 Sigma-70, region 4 Avi_0089 PF04542 Sigma-70 region 2 Avi_0090 PF12973 ChrR Cupin-like domain Avi_0092 PF08220 DeoR-like helix-turn-helix domain Avi_0092 PF00455 DeoR C terminal sensor domain Avi_0094 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Avi_0094 PF01266 FAD dependent oxidoreductase Avi_0096 PF00005 ABC transporter Avi_0097 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0098 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0102 PF00034 Cytochrome c Avi_0103 PF02348 Cytidylyltransferase Avi_0105 PF00800 Prephenate dehydratase Avi_0105 PF01817 Chorismate mutase type II Avi_0107 PF00933 Glycosyl hydrolase family 3 N terminal domain Avi_0108 PF00293 NUDIX domain Avi_0108 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain Avi_0108 PF09297 NADH pyrophosphatase zinc ribbon domain Avi_0110 PF12170 DNA polymerase III tau subunit V interacting with alpha Avi_0110 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Avi_0110 PF12169 DNA polymerase III subunits gamma and tau domain III Avi_0111 PF02575 YbaB/EbfC DNA-binding family Avi_0113 PF07411 Domain of unknown function (DUF1508) Avi_0116 PF00091 Tubulin/FtsZ family, GTPase domain Avi_0116 PF12327 FtsZ family, C-terminal domain Avi_0118 PF00679 Elongation factor G C-terminus Avi_0118 PF06421 GTP-binding protein LepA C-terminus Avi_0118 PF03144 Elongation factor Tu domain 2 Avi_0118 PF00009 Elongation factor Tu GTP binding domain Avi_0122 PF00884 Sulfatase Avi_0122 PF16347 Domain of unknown function (DUF4976) Avi_0126 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Avi_0126 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Avi_0126 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Avi_0126 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Avi_0127 PF03061 Thioesterase superfamily Avi_0131 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Avi_0134 PF03960 ArsC family Avi_0136 PF04073 Aminoacyl-tRNA editing domain Avi_0137 PF02073 Thermophilic metalloprotease (M29) Avi_0142 PF00313 'Cold-shock' DNA-binding domain Avi_0143 PF13742 OB-fold nucleic acid binding domain Avi_0143 PF02601 Exonuclease VII, large subunit Avi_0148 PF00535 Glycosyl transferase family 2 Avi_0150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_0150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Avi_0152 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0152 PF03466 LysR substrate binding domain Avi_0153 PF00248 Aldo/keto reductase family Avi_0156 PF13662 Toprim domain Avi_0156 PF02132 RecR protein Avi_0157 PF13406 Transglycosylase SLT domain Avi_0163 PF05977 Transmembrane secretion effector Avi_0164 PF17384 RimP C-terminal SH3 domain Avi_0164 PF02576 RimP N-terminal domain Avi_0166 PF00575 S1 RNA binding domain Avi_0166 PF08529 NusA N-terminal domain Avi_0166 PF13184 NusA-like KH domain Avi_0169 PF00009 Elongation factor Tu GTP binding domain Avi_0169 PF11987 Translation-initiation factor 2 Avi_0169 PF08364 Bacterial translation initiation factor IF-2 associated region Avi_0169 PF04760 Translation initiation factor IF-2, N-terminal region Avi_0170 PF02033 Ribosome-binding factor A Avi_0171 PF09157 Pseudouridine synthase II TruB, C-terminal Avi_0171 PF16198 tRNA pseudouridylate synthase B C-terminal domain Avi_0171 PF01509 TruB family pseudouridylate synthase (N terminal domain) Avi_0173 PF00312 Ribosomal protein S15 Avi_0175 PF01138 3' exoribonuclease family, domain 1 Avi_0175 PF03725 3' exoribonuclease family, domain 2 Avi_0175 PF00575 S1 RNA binding domain Avi_0175 PF00013 KH domain Avi_0175 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Avi_0178 PF08468 Methyltransferase small domain N-terminal Avi_0178 PF05175 Methyltransferase small domain Avi_0180 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_0180 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_0181 PF07977 FabA-like domain Avi_0183 PF01475 Ferric uptake regulator family Avi_0184 PF03458 UPF0126 domain Avi_0190 PF07690 Major Facilitator Superfamily Avi_0190 PF00083 Sugar (and other) transporter Avi_0193 PF02224 Cytidylate kinase Avi_0194 PF00575 S1 RNA binding domain Avi_0200 PF00707 Translation initiation factor IF-3, C-terminal domain Avi_0200 PF05198 Translation initiation factor IF-3, N-terminal domain Avi_0202 PF00072 Response regulator receiver domain Avi_0202 PF00486 Transcriptional regulatory protein, C terminal Avi_0203 PF00672 HAMP domain Avi_0203 PF16527 Two-component sensor protein CpxA, periplasmic domain Avi_0203 PF00512 His Kinase A (phospho-acceptor) domain Avi_0203 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0205 PF01632 Ribosomal protein L35 Avi_0206 PF00453 Ribosomal protein L20 Avi_0208 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Avi_0208 PF01409 tRNA synthetases class II core domain (F) Avi_0209 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Avi_0209 PF03147 Ferredoxin-fold anticodon binding domain Avi_0209 PF03484 tRNA synthetase B5 domain Avi_0209 PF03483 B3/4 domain Avi_0209 PF01588 Putative tRNA binding domain Avi_0210 PF07886 BA14K-like protein Avi_0214 PF00437 Type II/IV secretion system protein Avi_0217 PF04972 BON domain Avi_0217 PF00263 Bacterial type II and III secretion system protein Avi_0217 PF13629 Pilus formation protein N terminal region Avi_0229 PF01676 Metalloenzyme superfamily Avi_0230 PF00962 Adenosine/AMP deaminase Avi_0233 PF01810 LysE type translocator Avi_0235 PF00300 Histidine phosphatase superfamily (branch 1) Avi_0237 PF01113 Dihydrodipicolinate reductase, N-terminus Avi_0237 PF05173 Dihydrodipicolinate reductase, C-terminus Avi_0238 PF00664 ABC transporter transmembrane region Avi_0238 PF00005 ABC transporter Avi_0239 PF02685 Glucokinase Avi_0240 PF02142 MGS-like domain Avi_0241 PF03411 Penicillin-insensitive murein endopeptidase Avi_0244 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_0245 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0246 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0246 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_0247 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_0247 PF00005 ABC transporter Avi_0248 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Avi_0250 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Avi_0250 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Avi_0262 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Avi_0263 PF01048 Phosphorylase superfamily Avi_0264 PF01791 DeoC/LacD family aldolase Avi_0265 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Avi_0265 PF00591 Glycosyl transferase family, a/b domain Avi_0265 PF02885 Glycosyl transferase family, helical bundle domain Avi_0266 PF07702 UTRA domain Avi_0266 PF00392 Bacterial regulatory proteins, gntR family Avi_0267 PF06754 Phosphonate metabolism protein PhnG Avi_0269 PF05845 Bacterial phosphonate metabolism protein (PhnH) Avi_0270 PF05861 Bacterial phosphonate metabolism protein (PhnI) Avi_0273 PF06007 Phosphonate metabolism protein PhnJ Avi_0274 PF00005 ABC transporter Avi_0275 PF00005 ABC transporter Avi_0277 PF00132 Bacterial transferase hexapeptide (six repeats) Avi_0278 PF00005 ABC transporter Avi_0282 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0284 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0286 PF06299 Protein of unknown function (DUF1045) Avi_0287 PF07969 Amidohydrolase family Avi_0288 PF00625 Guanylate kinase Avi_0292 PF00883 Cytosol aminopeptidase family, catalytic domain Avi_0292 PF02789 Cytosol aminopeptidase family, N-terminal domain Avi_0293 PF04264 YceI-like domain Avi_0295 PF04264 YceI-like domain Avi_0297 PF00877 NlpC/P60 family Avi_0299 PF01367 5'-3' exonuclease, C-terminal SAM fold Avi_0299 PF00476 DNA polymerase family A Avi_0299 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Avi_0299 PF01612 3'-5' exonuclease Avi_0301 PF07687 Peptidase dimerisation domain Avi_0301 PF01546 Peptidase family M20/M25/M40 Avi_0303 PF04073 Aminoacyl-tRNA editing domain Avi_0305 PF17092 Penicillin-binding protein OB-like domain Avi_0305 PF00912 Transglycosylase Avi_0305 PF00905 Penicillin binding protein transpeptidase domain Avi_0306 PF00012 Hsp70 protein Avi_0308 PF00684 DnaJ central domain Avi_0308 PF00226 DnaJ domain Avi_0308 PF01556 DnaJ C terminal domain Avi_0309 PF04102 SlyX Avi_0311 PF02463 RecF/RecN/SMC N terminal domain Avi_0312 PF00581 Rhodanese-like domain Avi_0312 PF00899 ThiF family Avi_0314 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Avi_0314 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Avi_0316 PF00294 pfkB family carbohydrate kinase Avi_0317 PF08447 PAS fold Avi_0317 PF00990 Diguanylate cyclase, GGDEF domain Avi_0317 PF00563 EAL domain Avi_0317 PF08448 PAS fold Avi_0319 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) Avi_0320 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Avi_0320 PF00361 Proton-conducting membrane transporter Avi_0321 PF03466 LysR substrate binding domain Avi_0321 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0326 PF00440 Bacterial regulatory proteins, tetR family Avi_0327 PF02540 NAD synthase Avi_0327 PF00958 GMP synthase C terminal domain Avi_0327 PF00117 Glutamine amidotransferase class-I Avi_0330 PF03073 TspO/MBR family Avi_0336 PF01189 16S rRNA methyltransferase RsmB/F Avi_0336 PF01029 NusB family Avi_0337 PF03330 Lytic transglycolase Avi_0340 PF08331 Domain of unknown function (DUF1730) Avi_0341 PF00043 Glutathione S-transferase, C-terminal domain Avi_0341 PF13417 Glutathione S-transferase, N-terminal domain Avi_0342 PF02673 Bacitracin resistance protein BacA Avi_0347 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Avi_0349 PF13649 Methyltransferase domain Avi_0351 PF00712 DNA polymerase III beta subunit, N-terminal domain Avi_0351 PF02767 DNA polymerase III beta subunit, central domain Avi_0351 PF02768 DNA polymerase III beta subunit, C-terminal domain Avi_0352 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Avi_0353 PF02021 Uncharacterised protein family UPF0102 Avi_0354 PF13416 Bacterial extracellular solute-binding protein Avi_0356 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0357 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0359 PF00005 ABC transporter Avi_0361 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Avi_0361 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Avi_0363 PF13335 Magnesium chelatase, subunit ChlI C-terminal Avi_0363 PF01078 Magnesium chelatase, subunit ChlI Avi_0364 PF00291 Pyridoxal-phosphate dependent enzyme Avi_0366 PF01810 LysE type translocator Avi_0368 PF00692 dUTPase Avi_0369 PF16658 Class II release factor RF3, C-terminal domain Avi_0369 PF03144 Elongation factor Tu domain 2 Avi_0369 PF00009 Elongation factor Tu GTP binding domain Avi_0370 PF00982 Glycosyltransferase family 20 Avi_0371 PF02358 Trehalose-phosphatase Avi_0372 PF08543 Phosphomethylpyrimidine kinase Avi_0377 PF02678 Pirin Avi_0377 PF05726 Pirin C-terminal cupin domain Avi_0380 PF03466 LysR substrate binding domain Avi_0380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0383 PF04127 DNA / pantothenate metabolism flavoprotein Avi_0383 PF02441 Flavoprotein Avi_0384 PF13581 Histidine kinase-like ATPase domain Avi_0384 PF07568 Histidine kinase Avi_0384 PF13426 PAS domain Avi_0385 PF00072 Response regulator receiver domain Avi_0386 PF00512 His Kinase A (phospho-acceptor) domain Avi_0386 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0386 PF00072 Response regulator receiver domain Avi_0386 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_0386 PF01627 Hpt domain Avi_0387 PF03109 ABC1 family Avi_0388 PF01209 ubiE/COQ5 methyltransferase family Avi_0389 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Avi_0389 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Avi_0390 PF01649 Ribosomal protein S20 Avi_0391 PF11638 DnaA N-terminal domain Avi_0391 PF08299 Bacterial dnaA protein helix-turn-helix Avi_0391 PF00308 Bacterial dnaA protein Avi_0392 PF00892 EamA-like transporter family Avi_0393 PF13649 Methyltransferase domain Avi_0394 PF04055 Radical SAM superfamily Avi_0394 PF06969 HemN C-terminal domain Avi_0395 PF01725 Ham1 family Avi_0397 PF03725 3' exoribonuclease family, domain 2 Avi_0397 PF01138 3' exoribonuclease family, domain 1 Avi_0398 PF01628 HrcA protein C terminal domain Avi_0399 PF01025 GrpE Avi_0401 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Avi_0402 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Avi_0402 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Avi_0404 PF00309 Sigma-54 factor, Activator interacting domain (AID) Avi_0404 PF04963 Sigma-54 factor, core binding domain Avi_0404 PF04552 Sigma-54, DNA binding domain Avi_0405 PF00005 ABC transporter Avi_0406 PF03968 OstA-like protein Avi_0409 PF00216 Bacterial DNA-binding protein Avi_0413 PF01170 Putative RNA methylase family UPF0020 Avi_0413 PF10672 S-adenosylmethionine-dependent methyltransferase Avi_0413 PF02926 THUMP domain Avi_0414 PF08032 RNA 2'-O ribose methyltransferase substrate binding Avi_0414 PF00588 SpoU rRNA Methylase family Avi_0415 PF01252 Signal peptidase (SPase) II Avi_0417 PF01627 Hpt domain Avi_0417 PF00512 His Kinase A (phospho-acceptor) domain Avi_0417 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0417 PF00672 HAMP domain Avi_0417 PF00072 Response regulator receiver domain Avi_0417 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Avi_0422 PF03466 LysR substrate binding domain Avi_0422 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0423 PF00488 MutS domain V Avi_0423 PF05190 MutS family domain IV Avi_0423 PF05192 MutS domain III Avi_0423 PF05188 MutS domain II Avi_0423 PF01624 MutS domain I Avi_0424 PF08335 GlnD PII-uridylyltransferase Avi_0424 PF01966 HD domain Avi_0424 PF01842 ACT domain Avi_0425 PF03023 Lipid II flippase MurJ Avi_0426 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_0427 PF00579 tRNA synthetases class I (W and Y) Avi_0430 PF01106 NifU-like domain Avi_0432 PF00814 Glycoprotease family Avi_0435 PF01475 Ferric uptake regulator family Avi_0437 PF04055 Radical SAM superfamily Avi_0437 PF01938 TRAM domain Avi_0437 PF00919 Uncharacterized protein family UPF0004 Avi_0438 PF02562 PhoH-like protein Avi_0440 PF02130 Uncharacterized protein family UPF0054 Avi_0441 PF00571 CBS domain Avi_0441 PF03471 Transporter associated domain Avi_0442 PF00795 Carbon-nitrogen hydrolase Avi_0443 PF01381 Helix-turn-helix Avi_0444 PF02773 S-adenosylmethionine synthetase, C-terminal domain Avi_0444 PF00438 S-adenosylmethionine synthetase, N-terminal domain Avi_0444 PF02772 S-adenosylmethionine synthetase, central domain Avi_0445 PF02390 Putative methyltransferase Avi_0447 PF00011 Hsp20/alpha crystallin family Avi_0448 PF01156 Inosine-uridine preferring nucleoside hydrolase Avi_0452 PF00672 HAMP domain Avi_0452 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_0453 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0454 PF00825 Ribonuclease P Avi_0455 PF02096 60Kd inner membrane protein Avi_0455 PF14849 YidC periplasmic domain Avi_0456 PF01926 50S ribosome-binding GTPase Avi_0459 PF02469 Fasciclin domain Avi_0464 PF00696 Amino acid kinase family Avi_0465 PF00294 pfkB family carbohydrate kinase Avi_0470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Avi_0470 PF00460 Flagella basal body rod protein Avi_0470 PF07559 Flagellar basal body protein FlaE Avi_0473 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Avi_0473 PF14602 Hexapeptide repeat of succinyl-transferase Avi_0473 PF00132 Bacterial transferase hexapeptide (six repeats) Avi_0474 PF01546 Peptidase family M20/M25/M40 Avi_0474 PF07687 Peptidase dimerisation domain Avi_0477 PF05161 MOFRL family Avi_0477 PF13660 Domain of unknown function (DUF4147) Avi_0478 PF01430 Hsp33 protein Avi_0479 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Avi_0479 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Avi_0481 PF00202 Aminotransferase class-III Avi_0485 PF00072 Response regulator receiver domain Avi_0485 PF00486 Transcriptional regulatory protein, C terminal Avi_0488 PF01895 PhoU domain Avi_0489 PF00005 ABC transporter Avi_0491 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0493 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0496 PF00989 PAS fold Avi_0496 PF00512 His Kinase A (phospho-acceptor) domain Avi_0496 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0496 PF16736 Single Cache-like Avi_0497 PF03976 Polyphosphate kinase 2 (PPK2) Avi_0501 PF00005 ABC transporter Avi_0501 PF00571 CBS domain Avi_0502 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0505 PF00392 Bacterial regulatory proteins, gntR family Avi_0505 PF07702 UTRA domain Avi_0506 PF00221 Aromatic amino acid lyase Avi_0508 PF00202 Aminotransferase class-III Avi_0509 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Avi_0511 PF03480 Bacterial extracellular solute-binding protein, family 7 Avi_0512 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0516 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Avi_0516 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Avi_0518 PF05544 Proline racemase Avi_0519 PF00027 Cyclic nucleotide-binding domain Avi_0519 PF13545 Crp-like helix-turn-helix domain Avi_0520 PF00486 Transcriptional regulatory protein, C terminal Avi_0520 PF00072 Response regulator receiver domain Avi_0522 PF00072 Response regulator receiver domain Avi_0522 PF01627 Hpt domain Avi_0522 PF00672 HAMP domain Avi_0522 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0522 PF17149 Periplasmic sensor domain found in signal transduction proteins Avi_0522 PF00512 His Kinase A (phospho-acceptor) domain Avi_0523 PF00072 Response regulator receiver domain Avi_0524 PF01979 Amidohydrolase family Avi_0525 PF00990 Diguanylate cyclase, GGDEF domain Avi_0528 PF00156 Phosphoribosyl transferase domain Avi_0530 PF00294 pfkB family carbohydrate kinase Avi_0534 PF00342 Phosphoglucose isomerase Avi_0535 PF13193 AMP-binding enzyme C-terminal domain Avi_0535 PF00501 AMP-binding enzyme Avi_0537 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Avi_0537 PF00128 Alpha amylase, catalytic domain Avi_0540 PF01416 tRNA pseudouridine synthase Avi_0541 PF00551 Formyl transferase Avi_0541 PF02911 Formyl transferase, C-terminal domain Avi_0542 PF01327 Polypeptide deformylase Avi_0543 PF04379 ApaG domain Avi_0544 PF01053 Cys/Met metabolism PLP-dependent enzyme Avi_0545 PF00692 dUTPase Avi_0547 PF01022 Bacterial regulatory protein, arsR family Avi_0548 PF01609 Transposase DDE domain Avi_0549 PF13340 Putative transposase of IS4/5 family (DUF4096) Avi_0554 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0554 PF03466 LysR substrate binding domain Avi_0556 PF02798 Glutathione S-transferase, N-terminal domain Avi_0556 PF00043 Glutathione S-transferase, C-terminal domain Avi_0561 PF13610 DDE domain Avi_0570 PF00005 ABC transporter Avi_0570 PF00664 ABC transporter transmembrane region Avi_0570 PF03412 Peptidase C39 family Avi_0578 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_0584 PF00072 Response regulator receiver domain Avi_0584 PF00196 Bacterial regulatory proteins, luxR family Avi_0586 PF01180 Dihydroorotate dehydrogenase Avi_0597 PF00378 Enoyl-CoA hydratase/isomerase Avi_0597 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Avi_0597 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Avi_0598 PF00108 Thiolase, N-terminal domain Avi_0598 PF02803 Thiolase, C-terminal domain Avi_0599 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_0599 PF12806 Acetyl-CoA dehydrogenase C-terminal like Avi_0599 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_0599 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Avi_0602 PF01925 Sulfite exporter TauE/SafE Avi_0605 PF00245 Alkaline phosphatase Avi_0607 PF00005 ABC transporter Avi_0610 PF01590 GAF domain Avi_0610 PF00563 EAL domain Avi_0610 PF00990 Diguanylate cyclase, GGDEF domain Avi_0610 PF00360 Phytochrome region Avi_0612 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Avi_0612 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Avi_0614 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_0615 PF00271 Helicase conserved C-terminal domain Avi_0615 PF08494 DEAD/H associated Avi_0615 PF00270 DEAD/DEAH box helicase Avi_0617 PF03793 PASTA domain Avi_0617 PF00069 Protein kinase domain Avi_0619 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Avi_0620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0620 PF00672 HAMP domain Avi_0620 PF00512 His Kinase A (phospho-acceptor) domain Avi_0620 PF01627 Hpt domain Avi_0620 PF00072 Response regulator receiver domain Avi_0622 PF01741 Large-conductance mechanosensitive channel, MscL Avi_0626 PF00483 Nucleotidyl transferase Avi_0627 PF16363 GDP-mannose 4,6 dehydratase Avi_0628 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Avi_0629 PF08484 C-methyltransferase C-terminal domain Avi_0629 PF08421 Putative zinc binding domain Avi_0631 PF00535 Glycosyl transferase family 2 Avi_0636 PF03884 DNA gyrase inhibitor YacG Avi_0638 PF02545 Maf-like protein Avi_0640 PF01176 Translation initiation factor 1A / IF-1 Avi_0642 PF06793 Uncharacterised protein family (UPF0262) Avi_0643 PF00815 Histidinol dehydrogenase Avi_0645 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Avi_0652 PF00440 Bacterial regulatory proteins, tetR family Avi_0652 PF08361 MAATS-type transcriptional repressor, C-terminal region Avi_0656 PF06983 3-demethylubiquinone-9 3-methyltransferase Avi_0658 PF02899 Phage integrase, N-terminal SAM-like domain Avi_0658 PF00589 Phage integrase family Avi_0659 PF08360 QacR-like protein, C-terminal region Avi_0659 PF00440 Bacterial regulatory proteins, tetR family Avi_0662 PF03352 Methyladenine glycosylase Avi_0664 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Avi_0664 PF10996 Beta-Casp domain Avi_0664 PF00753 Metallo-beta-lactamase superfamily Avi_0669 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0669 PF03466 LysR substrate binding domain Avi_0680 PF02534 Type IV secretory system Conjugative DNA transfer Avi_0682 PF01443 Viral (Superfamily 1) RNA helicase Avi_0682 PF03389 MobA/MobL family Avi_0682 PF17841 BID domain of Bartonella effector protein (Bep) Avi_0683 PF00665 Integrase core domain Avi_0684 PF01695 IstB-like ATP binding protein Avi_0687 PF05717 IS66 Orf2 like protein Avi_0688 PF13005 zinc-finger binding domain of transposase IS66 Avi_0688 PF03050 Transposase IS66 family Avi_0688 PF13817 IS66 C-terminal element Avi_0688 PF13007 Transposase C of IS166 homeodomain Avi_0692 PF05717 IS66 Orf2 like protein Avi_0693 PF13005 zinc-finger binding domain of transposase IS66 Avi_0693 PF13007 Transposase C of IS166 homeodomain Avi_0693 PF03050 Transposase IS66 family Avi_0693 PF13817 IS66 C-terminal element Avi_0697 PF00082 Subtilase family Avi_0701 PF01850 PIN domain Avi_0702 PF09957 Bacterial antitoxin of type II TA system, VapB Avi_0704 PF07015 VirC1 protein Avi_0710 PF00589 Phage integrase family Avi_0710 PF13495 Phage integrase, N-terminal SAM-like domain Avi_0712 PF00005 ABC transporter Avi_0716 PF12848 ABC transporter Avi_0716 PF00005 ABC transporter Avi_0718 PF00593 TonB dependent receptor Avi_0718 PF07715 TonB-dependent Receptor Plug Domain Avi_0721 PF01312 FlhB HrpN YscU SpaS Family Avi_0722 PF14841 FliG middle domain Avi_0722 PF01706 FliG C-terminal domain Avi_0722 PF14842 FliG N-terminal domain Avi_0724 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Avi_0726 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Avi_0728 PF01618 MotA/TolQ/ExbB proton channel family Avi_0729 PF00460 Flagella basal body rod protein Avi_0729 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Avi_0731 PF18269 T3SS EscN ATPase C-terminal domain Avi_0731 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Avi_0735 PF00460 Flagella basal body rod protein Avi_0737 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Avi_0738 PF02049 Flagellar hook-basal body complex protein FliE Avi_0740 PF00460 Flagella basal body rod protein Avi_0740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Avi_0741 PF13144 Chaperone for flagella basal body P-ring formation Avi_0742 PF02119 Flagellar P-ring protein Avi_0744 PF02107 Flagellar L-ring protein Avi_0747 PF00813 FliP family Avi_0748 PF00669 Bacterial flagellin N-terminal helical region Avi_0748 PF00700 Bacterial flagellin C-terminal helical region Avi_0749 PF00669 Bacterial flagellin N-terminal helical region Avi_0749 PF00700 Bacterial flagellin C-terminal helical region Avi_0750 PF00700 Bacterial flagellin C-terminal helical region Avi_0750 PF00669 Bacterial flagellin N-terminal helical region Avi_0751 PF00700 Bacterial flagellin C-terminal helical region Avi_0751 PF00669 Bacterial flagellin N-terminal helical region Avi_0752 PF00669 Bacterial flagellin N-terminal helical region Avi_0752 PF00700 Bacterial flagellin C-terminal helical region Avi_0756 PF00691 OmpA family Avi_0756 PF13677 Membrane MotB of proton-channel complex MotA/MotB Avi_0763 PF00486 Transcriptional regulatory protein, C terminal Avi_0764 PF07559 Flagellar basal body protein FlaE Avi_0764 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Avi_0764 PF00460 Flagella basal body rod protein Avi_0765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Avi_0765 PF00460 Flagella basal body rod protein Avi_0768 PF07378 Flagellar protein FlbT Avi_0769 PF03963 Flagellar hook capping protein - N-terminal region Avi_0770 PF01313 Bacterial export proteins, family 3 Avi_0772 PF00771 FHIPEP family Avi_0782 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Avi_0782 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Avi_0783 PF00356 Bacterial regulatory proteins, lacI family Avi_0785 PF01547 Bacterial extracellular solute-binding protein Avi_0786 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0787 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0788 PF00128 Alpha amylase, catalytic domain Avi_0789 PF00005 ABC transporter Avi_0789 PF03459 TOBE domain Avi_0789 PF17912 MalK OB fold domain Avi_0792 PF03390 2-hydroxycarboxylate transporter family Avi_0793 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_0793 PF02203 Tar ligand binding domain homologue Avi_0793 PF00672 HAMP domain Avi_0796 PF00920 Dehydratase family Avi_0797 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Avi_0798 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Avi_0798 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Avi_0799 PF01266 FAD dependent oxidoreductase Avi_0800 PF00120 Glutamine synthetase, catalytic domain Avi_0806 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_0806 PF00672 HAMP domain Avi_0811 PF00005 ABC transporter Avi_0811 PF00664 ABC transporter transmembrane region Avi_0812 PF07690 Major Facilitator Superfamily Avi_0816 PF00463 Isocitrate lyase family Avi_0818 PF06114 IrrE N-terminal-like domain Avi_0818 PF09856 Predicted transcriptional regulator (DUF2083) Avi_0818 PF01381 Helix-turn-helix Avi_0819 PF13416 Bacterial extracellular solute-binding protein Avi_0820 PF08402 TOBE domain Avi_0820 PF00005 ABC transporter Avi_0823 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0825 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0827 PF13426 PAS domain Avi_0827 PF13188 PAS domain Avi_0827 PF00989 PAS fold Avi_0827 PF00512 His Kinase A (phospho-acceptor) domain Avi_0827 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0836 PF00171 Aldehyde dehydrogenase family Avi_0838 PF02082 Transcriptional regulator Avi_0840 PF01202 Shikimate kinase Avi_0842 PF02611 CDP-diacylglycerol pyrophosphatase Avi_0844 PF01266 FAD dependent oxidoreductase Avi_0846 PF07470 Glycosyl Hydrolase Family 88 Avi_0849 PF00512 His Kinase A (phospho-acceptor) domain Avi_0849 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0849 PF00672 HAMP domain Avi_0850 PF00486 Transcriptional regulatory protein, C terminal Avi_0850 PF00072 Response regulator receiver domain Avi_0851 PF06039 Malate:quinone oxidoreductase (Mqo) Avi_0853 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_0886 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain Avi_0886 PF00589 Phage integrase family Avi_0888 PF02541 Ppx/GppA phosphatase family Avi_0889 PF01728 FtsJ-like methyltransferase Avi_0891 PF00990 Diguanylate cyclase, GGDEF domain Avi_0891 PF00563 EAL domain Avi_0891 PF13188 PAS domain Avi_0891 PF03707 Bacterial signalling protein N terminal repeat Avi_0893 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0893 PF00512 His Kinase A (phospho-acceptor) domain Avi_0893 PF18415 Histidine kinase receptor ArcB trans-membrane domain Avi_0893 PF01627 Hpt domain Avi_0893 PF00989 PAS fold Avi_0893 PF00072 Response regulator receiver domain Avi_0895 PF01119 DNA mismatch repair protein, C-terminal domain Avi_0895 PF08676 MutL C terminal dimerisation domain Avi_0897 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Avi_0899 PF00534 Glycosyl transferases group 1 Avi_0899 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Avi_0902 PF00459 Inositol monophosphatase family Avi_0903 PF01523 Putative modulator of DNA gyrase Avi_0904 PF00999 Sodium/hydrogen exchanger family Avi_0904 PF02254 TrkA-N domain Avi_0906 PF01734 Patatin-like phospholipase Avi_0910 PF01479 S4 domain Avi_0910 PF00849 RNA pseudouridylate synthase Avi_0911 PF14437 MafB19-like deaminase Avi_0912 PF00753 Metallo-beta-lactamase superfamily Avi_0914 PF07690 Major Facilitator Superfamily Avi_0916 PF08450 SMP-30/Gluconolactonase/LRE-like region Avi_0918 PF03472 Autoinducer binding domain Avi_0918 PF00196 Bacterial regulatory proteins, luxR family Avi_0919 PF00005 ABC transporter Avi_0923 PF10609 NUBPL iron-transfer P-loop NTPase Avi_0926 PF01544 CorA-like Mg2+ transporter protein Avi_0927 PF02705 K+ potassium transporter Avi_0928 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter Avi_0929 PF00119 ATP synthase A chain Avi_0930 PF00137 ATP synthase subunit C Avi_0931 PF00430 ATP synthase B/B' CF(0) Avi_0934 PF00430 ATP synthase B/B' CF(0) Avi_0936 PF01351 Ribonuclease HII Avi_0937 PF04055 Radical SAM superfamily Avi_0940 PF00994 Probable molybdopterin binding domain Avi_0941 PF00288 GHMP kinases N terminal domain Avi_0941 PF08544 GHMP kinases C terminal Avi_0943 PF00348 Polyprenyl synthetase Avi_0947 PF06965 Na+/H+ antiporter 1 Avi_0947 PF01343 Peptidase family S49 Avi_0950 PF13426 PAS domain Avi_0950 PF08447 PAS fold Avi_0950 PF07536 HWE histidine kinase Avi_0951 PF02091 Glycyl-tRNA synthetase alpha subunit Avi_0955 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Avi_0956 PF05746 DALR anticodon binding domain Avi_0956 PF02092 Glycyl-tRNA synthetase beta subunit Avi_0957 PF04463 Protein of unknown function (DUF523) Avi_0958 PF17200 Single Cache domain 2 Avi_0958 PF00672 HAMP domain Avi_0958 PF00672 HAMP domain Avi_0958 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_0958 PF17200 Single Cache domain 2 Avi_0958 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_0960 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Avi_0960 PF02843 Phosphoribosylglycinamide synthetase, C domain Avi_0960 PF02844 Phosphoribosylglycinamide synthetase, N domain Avi_0962 PF16921 Tex protein YqgF-like domain Avi_0962 PF09371 Tex-like protein N-terminal domain Avi_0962 PF00575 S1 RNA binding domain Avi_0962 PF17674 HHH domain Avi_0965 PF01040 UbiA prenyltransferase family Avi_0966 PF02583 Metal-sensitive transcriptional repressor Avi_0972 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0973 PF03459 TOBE domain Avi_0973 PF00005 ABC transporter Avi_0974 PF03459 TOBE domain Avi_0974 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0975 PF01565 FAD binding domain Avi_0975 PF02913 FAD linked oxidases, C-terminal domain Avi_0976 PF01300 Telomere recombination Avi_0976 PF03481 Putative GTP-binding controlling metal-binding Avi_0980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_0980 PF02203 Tar ligand binding domain homologue Avi_0980 PF00672 HAMP domain Avi_0981 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Avi_0981 PF00355 Rieske [2Fe-2S] domain Avi_0982 PF00175 Oxidoreductase NAD-binding domain Avi_0982 PF00111 2Fe-2S iron-sulfur cluster binding domain Avi_0982 PF00970 Oxidoreductase FAD-binding domain Avi_0984 PF07886 BA14K-like protein Avi_0986 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Avi_0986 PF12806 Acetyl-CoA dehydrogenase C-terminal like Avi_0986 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_0986 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_0987 PF00378 Enoyl-CoA hydratase/isomerase Avi_0988 PF00672 HAMP domain Avi_0988 PF02743 Cache domain Avi_0988 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_0991 PF05958 tRNA (Uracil-5-)-methyltransferase Avi_0992 PF01479 S4 domain Avi_0992 PF01728 FtsJ-like methyltransferase Avi_0994 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_0994 PF00672 HAMP domain Avi_0996 PF02203 Tar ligand binding domain homologue Avi_0996 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_0996 PF00672 HAMP domain Avi_0997 PF02779 Transketolase, pyrimidine binding domain Avi_0997 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Avi_0997 PF02780 Transketolase, C-terminal domain Avi_0998 PF02609 Exonuclease VII small subunit Avi_0999 PF00850 Histone deacetylase domain Avi_1004 PF02632 BioY family Avi_1006 PF02361 Cobalt transport protein Avi_1007 PF00005 ABC transporter Avi_1009 PF00491 Arginase family Avi_1010 PF06224 Winged helix DNA-binding domain Avi_1014 PF00925 GTP cyclohydrolase II Avi_1014 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Avi_1015 PF01264 Chorismate synthase Avi_1017 PF00563 EAL domain Avi_1017 PF00990 Diguanylate cyclase, GGDEF domain Avi_1017 PF13188 PAS domain Avi_1017 PF03707 Bacterial signalling protein N terminal repeat Avi_1020 PF00300 Histidine phosphatase superfamily (branch 1) Avi_1023 PF00684 DnaJ central domain Avi_1023 PF00226 DnaJ domain Avi_1023 PF01556 DnaJ C terminal domain Avi_1026 PF01243 Pyridoxamine 5'-phosphate oxidase Avi_1026 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Avi_1028 PF07690 Major Facilitator Superfamily Avi_1029 PF09278 MerR, DNA binding Avi_1029 PF00376 MerR family regulatory protein Avi_1030 PF00768 D-alanyl-D-alanine carboxypeptidase Avi_1030 PF07943 Penicillin-binding protein 5, C-terminal domain Avi_1034 PF13419 Haloacid dehalogenase-like hydrolase Avi_1036 PF01523 Putative modulator of DNA gyrase Avi_1039 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Avi_1039 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Avi_1041 PF00115 Cytochrome C and Quinol oxidase polypeptide I Avi_1042 PF01040 UbiA prenyltransferase family Avi_1044 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 Avi_1045 PF00510 Cytochrome c oxidase subunit III Avi_1048 PF02104 SURF1 family Avi_1052 PF02401 LytB protein Avi_1053 PF00905 Penicillin binding protein transpeptidase domain Avi_1055 PF01810 LysE type translocator Avi_1059 PF01636 Phosphotransferase enzyme family Avi_1060 PF00075 RNase H Avi_1062 PF01297 Zinc-uptake complex component A periplasmic Avi_1063 PF00950 ABC 3 transport family Avi_1065 PF00005 ABC transporter Avi_1067 PF00462 Glutaredoxin Avi_1067 PF08534 Redoxin Avi_1069 PF02622 Uncharacterized ACR, COG1678 Avi_1072 PF08448 PAS fold Avi_1072 PF08447 PAS fold Avi_1072 PF00990 Diguanylate cyclase, GGDEF domain Avi_1072 PF00563 EAL domain Avi_1073 PF13302 Acetyltransferase (GNAT) domain Avi_1074 PF05193 Peptidase M16 inactive domain Avi_1074 PF00675 Insulinase (Peptidase family M16) Avi_1075 PF00291 Pyridoxal-phosphate dependent enzyme Avi_1075 PF14821 Threonine synthase N terminus Avi_1079 PF00781 Diacylglycerol kinase catalytic domain Avi_1080 PF13419 Haloacid dehalogenase-like hydrolase Avi_1081 PF07729 FCD domain Avi_1081 PF00392 Bacterial regulatory proteins, gntR family Avi_1084 PF18755 Restriction Enzyme Adenine Methylase Associated Avi_1084 PF01555 DNA methylase Avi_1092 PF00730 HhH-GPD superfamily base excision DNA repair protein Avi_1092 PF14815 NUDIX domain Avi_1095 PF02463 RecF/RecN/SMC N terminal domain Avi_1099 PF07690 Major Facilitator Superfamily Avi_1102 PF02896 PEP-utilising enzyme, TIM barrel domain Avi_1102 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Avi_1102 PF00391 PEP-utilising enzyme, mobile domain Avi_1106 PF03466 LysR substrate binding domain Avi_1106 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_1110 PF01810 LysE type translocator Avi_1113 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Avi_1113 PF00529 HlyD membrane-fusion protein of T1SS Avi_1114 PF00664 ABC transporter transmembrane region Avi_1114 PF00005 ABC transporter Avi_1117 PF00672 HAMP domain Avi_1117 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_1117 PF02203 Tar ligand binding domain homologue Avi_1118 PF01507 Phosphoadenosine phosphosulfate reductase family Avi_1120 PF01507 Phosphoadenosine phosphosulfate reductase family Avi_1122 PF00009 Elongation factor Tu GTP binding domain Avi_1125 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Avi_1125 PF00356 Bacterial regulatory proteins, lacI family Avi_1127 PF00753 Metallo-beta-lactamase superfamily Avi_1127 PF16123 Hydroxyacylglutathione hydrolase C-terminus Avi_1130 PF01965 DJ-1/PfpI family Avi_1136 PF00654 Voltage gated chloride channel Avi_1138 PF00669 Bacterial flagellin N-terminal helical region Avi_1138 PF00700 Bacterial flagellin C-terminal helical region Avi_1139 PF00654 Voltage gated chloride channel Avi_1144 PF00732 GMC oxidoreductase Avi_1144 PF05199 GMC oxidoreductase Avi_1147 PF00171 Aldehyde dehydrogenase family Avi_1148 PF13417 Glutathione S-transferase, N-terminal domain Avi_1148 PF00043 Glutathione S-transferase, C-terminal domain Avi_1150 PF12411 Choline sulfatase enzyme C terminal Avi_1150 PF00884 Sulfatase Avi_1151 PF00440 Bacterial regulatory proteins, tetR family Avi_1151 PF13977 BetI-type transcriptional repressor, C-terminal Avi_1154 PF12792 CSS motif domain associated with EAL Avi_1154 PF00563 EAL domain Avi_1156 PF16197 Ketoacyl-synthetase C-terminal extension Avi_1156 PF08240 Alcohol dehydrogenase GroES-like domain Avi_1156 PF00107 Zinc-binding dehydrogenase Avi_1156 PF00698 Acyl transferase domain Avi_1156 PF14765 Polyketide synthase dehydratase Avi_1156 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_1156 PF00550 Phosphopantetheine attachment site Avi_1156 PF08659 KR domain Avi_1156 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_1157 PF13340 Putative transposase of IS4/5 family (DUF4096) Avi_1158 PF01609 Transposase DDE domain Avi_1159 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_1159 PF00672 HAMP domain Avi_1160 PF18254 HMW1 domain 2 Avi_1160 PF18071 HMW1C N-terminal Avi_1164 PF08220 DeoR-like helix-turn-helix domain Avi_1164 PF00455 DeoR C terminal sensor domain Avi_1167 PF08019 Phosphoethanolamine transferase EptA/EptB Avi_1167 PF00884 Sulfatase Avi_1177 PF07690 Major Facilitator Superfamily Avi_1179 PF00881 Nitroreductase family Avi_1186 PF01476 LysM domain Avi_1186 PF03734 L,D-transpeptidase catalytic domain Avi_1186 PF17969 L,D-transpeptidase C-terminal domain Avi_1187 PF17969 L,D-transpeptidase C-terminal domain Avi_1187 PF03734 L,D-transpeptidase catalytic domain Avi_1189 PF01047 MarR family Avi_1190 PF02566 OsmC-like protein Avi_1193 PF12282 Signal transduction histidine kinase Avi_1193 PF07568 Histidine kinase Avi_1193 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_1195 PF13426 PAS domain Avi_1195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_1195 PF00072 Response regulator receiver domain Avi_1199 PF00156 Phosphoribosyl transferase domain Avi_1200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_1200 PF02203 Tar ligand binding domain homologue Avi_1200 PF00672 HAMP domain Avi_1201 PF00672 HAMP domain Avi_1201 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_1201 PF02203 Tar ligand binding domain homologue Avi_1204 PF05872 Bacterial protein of unknown function (DUF853) Avi_1206 PF00224 Pyruvate kinase, barrel domain Avi_1206 PF00391 PEP-utilising enzyme, mobile domain Avi_1206 PF02887 Pyruvate kinase, alpha/beta domain Avi_1208 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_1208 PF00672 HAMP domain Avi_1209 PF02673 Bacitracin resistance protein BacA Avi_1210 PF00005 ABC transporter Avi_1211 PF02653 Branched-chain amino acid transport system / permease component Avi_1212 PF13407 Periplasmic binding protein domain Avi_1214 PF00480 ROK family Avi_1214 PF01047 MarR family Avi_1218 PF00005 ABC transporter Avi_1219 PF01032 FecCD transport family Avi_1222 PF01209 ubiE/COQ5 methyltransferase family Avi_1223 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_1223 PF03466 LysR substrate binding domain Avi_1224 PF07690 Major Facilitator Superfamily Avi_1225 PF00550 Phosphopantetheine attachment site Avi_1225 PF07993 Male sterility protein Avi_1234 PF00034 Cytochrome c Avi_1236 PF01322 Cytochrome C' Avi_1239 PF13302 Acetyltransferase (GNAT) domain Avi_1240 PF02525 Flavodoxin-like fold Avi_1242 PF01638 HxlR-like helix-turn-helix Avi_1245 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Avi_1245 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Avi_1247 PF03692 Putative zinc- or iron-chelating domain Avi_1249 PF05231 MASE1 Avi_1249 PF13426 PAS domain Avi_1249 PF08448 PAS fold Avi_1249 PF08447 PAS fold Avi_1249 PF00990 Diguanylate cyclase, GGDEF domain Avi_1249 PF00563 EAL domain Avi_1251 PF01063 Amino-transferase class IV Avi_1253 PF07731 Multicopper oxidase Avi_1253 PF07732 Multicopper oxidase Avi_1256 PF06903 VirK protein Avi_1258 PF00326 Prolyl oligopeptidase family Avi_1258 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Avi_1264 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_1265 PF00582 Universal stress protein family Avi_1267 PF01124 MAPEG family Avi_1271 PF03006 Haemolysin-III related Avi_1273 PF00027 Cyclic nucleotide-binding domain Avi_1273 PF00325 Bacterial regulatory proteins, crp family Avi_1274 PF00583 Acetyltransferase (GNAT) family Avi_1277 PF05443 ROS/MUCR transcriptional regulator protein Avi_1278 PF03334 Na+/H+ antiporter subunit Avi_1279 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Avi_1281 PF01899 Na+/H+ ion antiporter subunit Avi_1283 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Avi_1284 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Avi_1286 PF01641 SelR domain Avi_1295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Avi_1296 PF02687 FtsX-like permease family Avi_1296 PF00005 ABC transporter Avi_1296 PF12704 MacB-like periplasmic core domain Avi_1302 PF02657 Fe-S metabolism associated domain Avi_1305 PF00512 His Kinase A (phospho-acceptor) domain Avi_1305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_1308 PF00873 AcrB/AcrD/AcrF family Avi_1323 PF00905 Penicillin binding protein transpeptidase domain Avi_1323 PF00912 Transglycosylase Avi_1324 PF03692 Putative zinc- or iron-chelating domain Avi_1328 PF00376 MerR family regulatory protein Avi_1328 PF09278 MerR, DNA binding Avi_1334 PF04860 Phage portal protein Avi_1358 PF00072 Response regulator receiver domain Avi_1358 PF00486 Transcriptional regulatory protein, C terminal Avi_1359 PF00672 HAMP domain Avi_1359 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_1359 PF00512 His Kinase A (phospho-acceptor) domain Avi_1361 PF05433 Glycine zipper 2TM domain Avi_1361 PF16998 17 kDa outer membrane surface antigen Avi_1363 PF03100 CcmE Avi_1364 PF01578 Cytochrome C assembly protein Avi_1364 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Avi_1365 PF03918 Cytochrome C biogenesis protein Avi_1368 PF13180 PDZ domain Avi_1370 PF00486 Transcriptional regulatory protein, C terminal Avi_1370 PF00072 Response regulator receiver domain Avi_1371 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_1371 PF00672 HAMP domain Avi_1371 PF00512 His Kinase A (phospho-acceptor) domain Avi_1372 PF03710 Glutamate-ammonia ligase adenylyltransferase Avi_1372 PF08335 GlnD PII-uridylyltransferase Avi_1373 PF00989 PAS fold Avi_1373 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_1373 PF00512 His Kinase A (phospho-acceptor) domain Avi_1374 PF11940 Domain of unknown function (DUF3458) Ig-like fold Avi_1374 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Avi_1374 PF01433 Peptidase family M1 domain Avi_1377 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_1377 PF17202 Single cache domain 3 Avi_1377 PF00672 HAMP domain Avi_1385 PF00012 Hsp70 protein Avi_1388 PF00873 AcrB/AcrD/AcrF family Avi_1389 PF13533 Biotin-lipoyl like Avi_1393 PF01063 Amino-transferase class IV Avi_1398 PF03448 MgtE intracellular N domain Avi_1398 PF01769 Divalent cation transporter Avi_1398 PF00571 CBS domain Avi_1399 PF07690 Major Facilitator Superfamily Avi_1401 PF00781 Diacylglycerol kinase catalytic domain Avi_1402 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_1402 PF00005 ABC transporter Avi_1403 PF00528 Binding-protein-dependent transport system inner membrane component Avi_1403 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_1404 PF00528 Binding-protein-dependent transport system inner membrane component Avi_1405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_1406 PF00120 Glutamine synthetase, catalytic domain Avi_1407 PF00202 Aminotransferase class-III Avi_1409 PF03551 Transcriptional regulator PadR-like family Avi_1410 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase Avi_1411 PF00535 Glycosyl transferase family 2 Avi_1414 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus Avi_1414 PF01048 Phosphorylase superfamily Avi_1416 PF00043 Glutathione S-transferase, C-terminal domain Avi_1416 PF02798 Glutathione S-transferase, N-terminal domain Avi_1423 PF00155 Aminotransferase class I and II Avi_1426 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_1426 PF14759 Reductase C-terminal Avi_1427 PF02530 Porin subfamily Avi_1428 PF02530 Porin subfamily Avi_1431 PF01464 Transglycosylase SLT domain Avi_1431 PF14718 Soluble lytic murein transglycosylase L domain Avi_1432 PF00701 Dihydrodipicolinate synthetase family Avi_1434 PF01668 SmpB protein Avi_1438 PF12833 Helix-turn-helix domain Avi_1438 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Avi_1438 PF02805 Metal binding domain of Ada Avi_1438 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Avi_1439 PF00672 HAMP domain Avi_1439 PF02203 Tar ligand binding domain homologue Avi_1439 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_1441 PF01192 RNA polymerase Rpb6 Avi_1443 PF02824 TGS domain Avi_1443 PF04607 Region found in RelA / SpoT proteins Avi_1443 PF13291 ACT domain Avi_1447 PF10502 Signal peptidase, peptidase S26 Avi_1449 PF00035 Double-stranded RNA binding motif Avi_1449 PF14622 Ribonuclease-III-like Avi_1450 PF07650 KH domain Avi_1450 PF01926 50S ribosome-binding GTPase Avi_1451 PF05145 Transition state regulatory protein AbrB Avi_1452 PF11967 Recombination protein O N terminal Avi_1452 PF02565 Recombination protein O C terminal Avi_1457 PF01966 HD domain Avi_1461 PF01966 HD domain Avi_1462 PF01571 Aminomethyltransferase folate-binding domain Avi_1466 PF00293 NUDIX domain Avi_1470 PF01066 CDP-alcohol phosphatidyltransferase Avi_1471 PF02666 Phosphatidylserine decarboxylase Avi_1472 PF00664 ABC transporter transmembrane region Avi_1472 PF00005 ABC transporter Avi_1474 PF01476 LysM domain Avi_1474 PF04972 BON domain Avi_1475 PF03641 Possible lysine decarboxylase Avi_1476 PF00892 EamA-like transporter family Avi_1477 PF08502 LeuA allosteric (dimerisation) domain Avi_1477 PF00682 HMGL-like Avi_1479 PF00561 alpha/beta hydrolase fold Avi_1484 PF01850 PIN domain Avi_1485 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Avi_1487 PF01406 tRNA synthetases class I (C) catalytic domain Avi_1489 PF00295 Glycosyl hydrolases family 28 Avi_1490 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Avi_1491 PF16363 GDP-mannose 4,6 dehydratase Avi_1493 PF04321 RmlD substrate binding domain Avi_1494 PF00483 Nucleotidyl transferase Avi_1495 PF00534 Glycosyl transferases group 1 Avi_1495 PF00535 Glycosyl transferase family 2 Avi_1497 PF00106 short chain dehydrogenase Avi_1499 PF00156 Phosphoribosyl transferase domain Avi_1499 PF13537 Glutamine amidotransferase domain Avi_1500 PF02674 Colicin V production protein Avi_1502 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Avi_1502 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Avi_1502 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Avi_1503 PF16363 GDP-mannose 4,6 dehydratase Avi_1505 PF16363 GDP-mannose 4,6 dehydratase Avi_1507 PF06745 KaiC Avi_1507 PF18073 Rubredoxin metal binding domain Avi_1508 PF00842 Alanine racemase, C-terminal domain Avi_1508 PF01168 Alanine racemase, N-terminal domain Avi_1509 PF12833 Helix-turn-helix domain Avi_1509 PF02311 AraC-like ligand binding domain Avi_1510 PF00528 Binding-protein-dependent transport system inner membrane component Avi_1512 PF00528 Binding-protein-dependent transport system inner membrane component Avi_1513 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_1515 PF00772 DnaB-like helicase N terminal domain Avi_1515 PF03796 DnaB-like helicase C terminal domain Avi_1516 PF01281 Ribosomal protein L9, N-terminal domain Avi_1516 PF03948 Ribosomal protein L9, C-terminal domain Avi_1519 PF01084 Ribosomal protein S18 Avi_1520 PF01250 Ribosomal protein S6 Avi_1523 PF16485 Protealysin propeptide Avi_1523 PF02868 Thermolysin metallopeptidase, alpha-helical domain Avi_1523 PF01447 Thermolysin metallopeptidase, catalytic domain Avi_1526 PF00248 Aldo/keto reductase family Avi_1527 PF00698 Acyl transferase domain Avi_1530 PF00550 Phosphopantetheine attachment site Avi_1531 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_1531 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_1532 PF02618 YceG-like family Avi_1534 PF03755 YicC-like family, N-terminal region Avi_1534 PF08340 Domain of unknown function (DUF1732) Avi_1535 PF00625 Guanylate kinase Avi_1536 PF08242 Methyltransferase domain Avi_1537 PF00398 Ribosomal RNA adenine dimethylase Avi_1538 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Avi_1541 PF04453 LPS transport system D Avi_1541 PF03968 OstA-like protein Avi_1544 PF01569 PAP2 superfamily Avi_1545 PF00883 Cytosol aminopeptidase family, catalytic domain Avi_1545 PF02789 Cytosol aminopeptidase family, N-terminal domain Avi_1547 PF00672 HAMP domain Avi_1547 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_1549 PF00005 ABC transporter Avi_1549 PF12848 ABC transporter Avi_1550 PF13417 Glutathione S-transferase, N-terminal domain Avi_1552 PF00334 Nucleoside diphosphate kinase Avi_1553 PF02391 MoaE protein Avi_1556 PF01066 CDP-alcohol phosphatidyltransferase Avi_1558 PF08459 UvrC Helix-hairpin-helix N-terminal Avi_1558 PF01541 GIY-YIG catalytic domain Avi_1558 PF12826 Helix-hairpin-helix motif Avi_1558 PF02151 UvrB/uvrC motif Avi_1561 PF13505 Outer membrane protein beta-barrel domain Avi_1562 PF13417 Glutathione S-transferase, N-terminal domain Avi_1562 PF00043 Glutathione S-transferase, C-terminal domain Avi_1564 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Avi_1565 PF01568 Molydopterin dinucleotide binding domain Avi_1565 PF00384 Molybdopterin oxidoreductase Avi_1565 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Avi_1566 PF00293 NUDIX domain Avi_1568 PF00753 Metallo-beta-lactamase superfamily Avi_1568 PF04273 Putative phosphatase (DUF442) Avi_1570 PF04143 Sulphur transport Avi_1573 PF01925 Sulfite exporter TauE/SafE Avi_1574 PF00551 Formyl transferase Avi_1575 PF02769 AIR synthase related protein, C-terminal domain Avi_1575 PF00586 AIR synthase related protein, N-terminal domain Avi_1577 PF01594 AI-2E family transporter Avi_1580 PF13090 Polyphosphate kinase C-terminal domain 2 Avi_1580 PF02503 Polyphosphate kinase middle domain Avi_1580 PF13089 Polyphosphate kinase N-terminal domain Avi_1580 PF17941 Polyphosphate kinase C-terminal domain 1 Avi_1582 PF02541 Ppx/GppA phosphatase family Avi_1583 PF02742 Iron dependent repressor, metal binding and dimerisation domain Avi_1583 PF01325 Iron dependent repressor, N-terminal DNA binding domain Avi_1584 PF01566 Natural resistance-associated macrophage protein Avi_1588 PF01612 3'-5' exonuclease Avi_1588 PF00570 HRDC domain Avi_1592 PF02938 GAD domain Avi_1592 PF00152 tRNA synthetases class II (D, K and N) Avi_1592 PF01336 OB-fold nucleic acid binding domain Avi_1595 PF00521 DNA gyrase/topoisomerase IV, subunit A Avi_1595 PF03989 DNA gyrase C-terminal domain, beta-propeller Avi_1597 PF00990 Diguanylate cyclase, GGDEF domain Avi_1597 PF13188 PAS domain Avi_1597 PF03707 Bacterial signalling protein N terminal repeat Avi_1597 PF00563 EAL domain Avi_1600 PF01590 GAF domain Avi_1600 PF00563 EAL domain Avi_1600 PF00989 PAS fold Avi_1600 PF00990 Diguanylate cyclase, GGDEF domain Avi_1601 PF04377 Arginine-tRNA-protein transferase, C terminus Avi_1601 PF04376 Arginine-tRNA-protein transferase, N terminus Avi_1603 PF00490 Delta-aminolevulinic acid dehydratase Avi_1610 PF00464 Serine hydroxymethyltransferase Avi_1612 PF03477 ATP cone domain Avi_1613 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Avi_1613 PF01872 RibD C-terminal domain Avi_1614 PF00677 Lumazine binding domain Avi_1618 PF00885 6,7-dimethyl-8-ribityllumazine synthase Avi_1620 PF01029 NusB family Avi_1621 PF07690 Major Facilitator Superfamily Avi_1622 PF03030 Inorganic H+ pyrophosphatase Avi_1628 PF02504 Fatty acid synthesis protein Avi_1630 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Avi_1630 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Avi_1631 PF00216 Bacterial DNA-binding protein Avi_1633 PF13411 MerR HTH family regulatory protein Avi_1637 PF00589 Phage integrase family Avi_1637 PF02899 Phage integrase, N-terminal SAM-like domain Avi_1638 PF01695 IstB-like ATP binding protein Avi_1639 PF00665 Integrase core domain Avi_1641 PF00082 Subtilase family Avi_1642 PF00004 ATPase family associated with various cellular activities (AAA) Avi_1644 PF01965 DJ-1/PfpI family Avi_1645 PF01965 DJ-1/PfpI family Avi_1646 PF04717 Type VI secretion system, phage-baseplate injector Avi_1654 PF00753 Metallo-beta-lactamase superfamily Avi_1661 PF13579 Glycosyl transferase 4-like domain Avi_1661 PF00534 Glycosyl transferases group 1 Avi_1663 PF02397 Bacterial sugar transferase Avi_1666 PF02706 Chain length determinant protein Avi_1670 PF02628 Cytochrome oxidase assembly protein Avi_1671 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Avi_1673 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase Avi_1674 PF01118 Semialdehyde dehydrogenase, NAD binding domain Avi_1675 PF00491 Arginase family Avi_1679 PF03992 Antibiotic biosynthesis monooxygenase Avi_1681 PF00380 Ribosomal protein S9/S16 Avi_1682 PF00572 Ribosomal protein L13 Avi_1684 PF13380 CoA binding domain Avi_1687 PF13380 CoA binding domain Avi_1690 PF01053 Cys/Met metabolism PLP-dependent enzyme Avi_1691 PF10518 TAT (twin-arginine translocation) pathway signal sequence Avi_1691 PF00149 Calcineurin-like phosphoesterase Avi_1694 PF00067 Cytochrome P450 Avi_1695 PF17151 Periplasmic sensor domain Avi_1695 PF00990 Diguanylate cyclase, GGDEF domain Avi_1696 PF00574 Clp protease Avi_1698 PF10431 C-terminal, D2-small domain, of ClpB protein Avi_1698 PF06689 ClpX C4-type zinc finger Avi_1698 PF07724 AAA domain (Cdc48 subfamily) Avi_1700 PF00004 ATPase family associated with various cellular activities (AAA) Avi_1700 PF05362 Lon protease (S16) C-terminal proteolytic domain Avi_1700 PF02190 ATP-dependent protease La (LON) substrate-binding domain Avi_1701 PF00216 Bacterial DNA-binding protein Avi_1703 PF01047 MarR family Avi_1704 PF13193 AMP-binding enzyme C-terminal domain Avi_1704 PF00501 AMP-binding enzyme Avi_1705 PF00378 Enoyl-CoA hydratase/isomerase Avi_1712 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Avi_1713 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Avi_1714 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Avi_1715 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Avi_1718 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Avi_1718 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Avi_1718 PF10531 SLBB domain Avi_1719 PF00318 Ribosomal protein S2 Avi_1720 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Avi_1720 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Avi_1720 PF00384 Molybdopterin oxidoreductase Avi_1721 PF00146 NADH dehydrogenase Avi_1723 PF12838 4Fe-4S dicluster domain Avi_1724 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Avi_1726 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Avi_1727 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Avi_1727 PF00361 Proton-conducting membrane transporter Avi_1728 PF00361 Proton-conducting membrane transporter Avi_1728 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus Avi_1729 PF00361 Proton-conducting membrane transporter Avi_1730 PF03309 Type III pantothenate kinase Avi_1730 PF02237 Biotin protein ligase C terminal domain Avi_1730 PF03099 Biotin/lipoate A/B protein ligase family Avi_1731 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Avi_1731 PF12706 Beta-lactamase superfamily domain Avi_1731 PF17770 Ribonuclease J C-terminal domain Avi_1735 PF01042 Endoribonuclease L-PSP Avi_1739 PF03129 Anticodon binding domain Avi_1739 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Avi_1740 PF02687 FtsX-like permease family Avi_1740 PF12704 MacB-like periplasmic core domain Avi_1741 PF00005 ABC transporter Avi_1742 PF14579 Helix-hairpin-helix motif Avi_1742 PF07733 Bacterial DNA polymerase III alpha NTPase domain Avi_1742 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Avi_1742 PF02811 PHP domain Avi_1745 PF11799 impB/mucB/samB family C-terminal domain Avi_1745 PF00817 impB/mucB/samB family Avi_1749 PF00072 Response regulator receiver domain Avi_1750 PF00990 Diguanylate cyclase, GGDEF domain Avi_1750 PF00072 Response regulator receiver domain Avi_1751 PF00471 Ribosomal protein L33 Avi_1753 PF07690 Major Facilitator Superfamily Avi_1755 PF17876 Cold shock domain Avi_1755 PF08206 Ribonuclease B OB domain Avi_1755 PF08461 Ribonuclease R winged-helix domain Avi_1755 PF00575 S1 RNA binding domain Avi_1755 PF00773 RNB domain Avi_1756 PF01131 DNA topoisomerase Avi_1756 PF01396 Topoisomerase DNA binding C4 zinc finger Avi_1756 PF13368 Topoisomerase C-terminal repeat Avi_1756 PF01751 Toprim domain Avi_1759 PF17782 DprA winged helix domain Avi_1759 PF02481 DNA recombination-mediator protein A Avi_1760 PF02660 Glycerol-3-phosphate acyltransferase Avi_1761 PF01979 Amidohydrolase family Avi_1762 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Avi_1762 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Avi_1763 PF18158 Adaptive response protein AidB N-terminal domain Avi_1763 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Avi_1763 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_1764 PF00583 Acetyltransferase (GNAT) family Avi_1768 PF03652 Holliday junction resolvase Avi_1770 PF02686 Glu-tRNAGln amidotransferase C subunit Avi_1773 PF01425 Amidase Avi_1776 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase Avi_1777 PF02684 Lipid-A-disaccharide synthetase Avi_1777 PF07578 Lipid A Biosynthesis N-terminal domain Avi_1778 PF00535 Glycosyl transferase family 2 Avi_1781 PF02637 GatB domain Avi_1781 PF02934 GatB/GatE catalytic domain Avi_1785 PF09923 Uncharacterized protein conserved in bacteria (DUF2155) Avi_1786 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Avi_1787 PF02785 Biotin carboxylase C-terminal domain Avi_1787 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_1787 PF00289 Biotin carboxylase, N-terminal domain Avi_1788 PF00364 Biotin-requiring enzyme Avi_1789 PF01220 Dehydroquinase class II Avi_1790 PF13462 Thioredoxin Avi_1794 PF10150 Ribonuclease E/G family Avi_1794 PF12111 Polyribonucleotide phosphorylase C terminal Avi_1794 PF10150 Ribonuclease E/G family Avi_1794 PF00575 S1 RNA binding domain Avi_1794 PF00575 S1 RNA binding domain Avi_1794 PF12111 Polyribonucleotide phosphorylase C terminal Avi_1795 PF01520 N-acetylmuramoyl-L-alanine amidase Avi_1795 PF11741 AMIN domain Avi_1797 PF00905 Penicillin binding protein transpeptidase domain Avi_1797 PF17092 Penicillin-binding protein OB-like domain Avi_1797 PF00912 Transglycosylase Avi_1799 PF03462 PCRF domain Avi_1799 PF00472 RF-1 domain Avi_1801 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Avi_1804 PF01513 ATP-NAD kinase Avi_1810 PF00588 SpoU rRNA Methylase family Avi_1810 PF08032 RNA 2'-O ribose methyltransferase substrate binding Avi_1812 PF00009 Elongation factor Tu GTP binding domain Avi_1812 PF03144 Elongation factor Tu domain 2 Avi_1812 PF03143 Elongation factor Tu C-terminal domain Avi_1817 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Avi_1818 PF02357 Transcription termination factor nusG Avi_1818 PF00467 KOW motif Avi_1819 PF00298 Ribosomal protein L11, RNA binding domain Avi_1819 PF03946 Ribosomal protein L11, N-terminal domain Avi_1820 PF00687 Ribosomal protein L1p/L10e family Avi_1822 PF00466 Ribosomal protein L10 Avi_1823 PF00542 Ribosomal protein L7/L12 C-terminal domain Avi_1823 PF16320 Ribosomal protein L7/L12 dimerisation domain Avi_1826 PF10385 RNA polymerase beta subunit external 1 domain Avi_1826 PF00562 RNA polymerase Rpb2, domain 6 Avi_1826 PF04560 RNA polymerase Rpb2, domain 7 Avi_1826 PF04563 RNA polymerase beta subunit Avi_1826 PF04561 RNA polymerase Rpb2, domain 2 Avi_1826 PF04565 RNA polymerase Rpb2, domain 3 Avi_1827 PF05000 RNA polymerase Rpb1, domain 4 Avi_1827 PF04997 RNA polymerase Rpb1, domain 1 Avi_1827 PF00623 RNA polymerase Rpb1, domain 2 Avi_1827 PF04983 RNA polymerase Rpb1, domain 3 Avi_1827 PF04998 RNA polymerase Rpb1, domain 5 Avi_1833 PF00164 Ribosomal protein S12/S23 Avi_1834 PF00177 Ribosomal protein S7p/S5e Avi_1835 PF00679 Elongation factor G C-terminus Avi_1835 PF14492 Elongation Factor G, domain II Avi_1835 PF03764 Elongation factor G, domain IV Avi_1835 PF03144 Elongation factor Tu domain 2 Avi_1835 PF00009 Elongation factor Tu GTP binding domain Avi_1837 PF00009 Elongation factor Tu GTP binding domain Avi_1837 PF03144 Elongation factor Tu domain 2 Avi_1837 PF03143 Elongation factor Tu C-terminal domain Avi_1839 PF00338 Ribosomal protein S10p/S20e Avi_1840 PF00297 Ribosomal protein L3 Avi_1841 PF00573 Ribosomal protein L4/L1 family Avi_1842 PF00276 Ribosomal protein L23 Avi_1843 PF03947 Ribosomal Proteins L2, C-terminal domain Avi_1843 PF00181 Ribosomal Proteins L2, RNA binding domain Avi_1844 PF00203 Ribosomal protein S19 Avi_1845 PF00237 Ribosomal protein L22p/L17e Avi_1846 PF07650 KH domain Avi_1846 PF00189 Ribosomal protein S3, C-terminal domain Avi_1847 PF00252 Ribosomal protein L16p/L10e Avi_1848 PF00831 Ribosomal L29 protein Avi_1849 PF00366 Ribosomal protein S17 Avi_1850 PF00238 Ribosomal protein L14p/L23e Avi_1851 PF00467 KOW motif Avi_1851 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Avi_1853 PF00281 Ribosomal protein L5 Avi_1853 PF00673 ribosomal L5P family C-terminus Avi_1854 PF00253 Ribosomal protein S14p/S29e Avi_1855 PF00410 Ribosomal protein S8 Avi_1856 PF00347 Ribosomal protein L6 Avi_1857 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Avi_1859 PF03719 Ribosomal protein S5, C-terminal domain Avi_1859 PF00333 Ribosomal protein S5, N-terminal domain Avi_1861 PF00327 Ribosomal protein L30p/L7e Avi_1862 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Avi_1863 PF00344 SecY translocase Avi_1864 PF05191 Adenylate kinase, active site lid Avi_1865 PF00416 Ribosomal protein S13/S18 Avi_1866 PF00411 Ribosomal protein S11 Avi_1867 PF01000 RNA polymerase Rpb3/RpoA insert domain Avi_1867 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Avi_1867 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Avi_1869 PF01196 Ribosomal protein L17 Avi_1877 PF00581 Rhodanese-like domain Avi_1878 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Avi_1878 PF02272 DHHA1 domain Avi_1878 PF01411 tRNA synthetases class II (A) Avi_1879 PF00291 Pyridoxal-phosphate dependent enzyme Avi_1880 PF00875 DNA photolyase Avi_1880 PF03441 FAD binding domain of DNA photolyase Avi_1882 PF01551 Peptidase family M23 Avi_1882 PF01476 LysM domain Avi_1882 PF08525 Opacity-associated protein A N-terminal motif Avi_1883 PF04305 Protein of unknown function (DUF455) Avi_1886 PF00578 AhpC/TSA family Avi_1889 PF00765 Autoinducer synthase Avi_1891 PF03949 Malic enzyme, NAD binding domain Avi_1891 PF01515 Phosphate acetyl/butaryl transferase Avi_1891 PF00390 Malic enzyme, N-terminal domain Avi_1893 PF02405 Permease MlaE Avi_1894 PF00005 ABC transporter Avi_1896 PF02470 MlaD protein Avi_1896 PF03886 ABC-type transport auxiliary lipoprotein component Avi_1897 PF00392 Bacterial regulatory proteins, gntR family Avi_1897 PF00155 Aminotransferase class I and II Avi_1905 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase Avi_1906 PF01259 SAICAR synthetase Avi_1909 PF07519 Tannase and feruloyl esterase Avi_1910 PF07694 5TMR of 5TMR-LYT Avi_1910 PF00990 Diguanylate cyclase, GGDEF domain Avi_1913 PF00180 Isocitrate/isopropylmalate dehydrogenase Avi_1915 PF00588 SpoU rRNA Methylase family Avi_1916 PF01177 Asp/Glu/Hydantoin racemase Avi_1919 PF01595 Cyclin M transmembrane N-terminal domain Avi_1919 PF00571 CBS domain Avi_1919 PF03471 Transporter associated domain Avi_1921 PF13472 GDSL-like Lipase/Acylhydrolase family Avi_1921 PF07859 alpha/beta hydrolase fold Avi_1922 PF01546 Peptidase family M20/M25/M40 Avi_1922 PF07687 Peptidase dimerisation domain Avi_1923 PF00484 Carbonic anhydrase Avi_1926 PF03741 Integral membrane protein TerC family Avi_1927 PF01479 S4 domain Avi_1927 PF00163 Ribosomal protein S4/S9 N-terminal domain Avi_1928 PF04960 Glutaminase Avi_1931 PF01171 PP-loop family Avi_1933 PF00459 Inositol monophosphatase family Avi_1934 PF00459 Inositol monophosphatase family Avi_1935 PF07690 Major Facilitator Superfamily Avi_1936 PF00462 Glutaredoxin Avi_1941 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Avi_1941 PF00586 AIR synthase related protein, N-terminal domain Avi_1941 PF02769 AIR synthase related protein, C-terminal domain Avi_1945 PF00226 DnaJ domain Avi_1945 PF01556 DnaJ C terminal domain Avi_1948 PF03099 Biotin/lipoate A/B protein ligase family Avi_1983 PF00483 Nucleotidyl transferase Avi_1984 PF04321 RmlD substrate binding domain Avi_1986 PF16363 GDP-mannose 4,6 dehydratase Avi_1988 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Avi_2007 PF05045 Rhamnan synthesis protein F Avi_2007 PF14307 Glycosyltransferase WbsX Avi_2009 PF00534 Glycosyl transferases group 1 Avi_2009 PF00535 Glycosyl transferase family 2 Avi_2016 PF02654 Cobalamin-5-phosphate synthase Avi_2018 PF02277 Phosphoribosyltransferase Avi_2020 PF01219 Prokaryotic diacylglycerol kinase Avi_2025 PF01327 Polypeptide deformylase Avi_2026 PF13545 Crp-like helix-turn-helix domain Avi_2026 PF00027 Cyclic nucleotide-binding domain Avi_2028 PF04055 Radical SAM superfamily Avi_2029 PF00550 Phosphopantetheine attachment site Avi_2030 PF07977 FabA-like domain Avi_2033 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_2033 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_2035 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_2035 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_2036 PF00107 Zinc-binding dehydrogenase Avi_2036 PF08240 Alcohol dehydrogenase GroES-like domain Avi_2040 PF02540 NAD synthase Avi_2040 PF00795 Carbon-nitrogen hydrolase Avi_2041 PF07676 WD40-like Beta Propeller Repeat Avi_2042 PF00881 Nitroreductase family Avi_2045 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Avi_2045 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Avi_2046 PF00579 tRNA synthetases class I (W and Y) Avi_2047 PF03702 Anhydro-N-acetylmuramic acid kinase Avi_2051 PF00989 PAS fold Avi_2051 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_2051 PF00512 His Kinase A (phospho-acceptor) domain Avi_2054 PF03167 Uracil DNA glycosylase superfamily Avi_2055 PF01037 Lrp/AsnC ligand binding domain Avi_2055 PF13404 AsnC-type helix-turn-helix domain Avi_2057 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Avi_2057 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Avi_2058 PF00561 alpha/beta hydrolase fold Avi_2059 PF08241 Methyltransferase domain Avi_2062 PF06233 Usg-like family Avi_2064 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2065 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2066 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_2069 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Avi_2070 PF12804 MobA-like NTP transferase domain Avi_2072 PF06463 Molybdenum Cofactor Synthesis C Avi_2072 PF04055 Radical SAM superfamily Avi_2075 PF17158 Membrane-associated sensor, integral membrane domain Avi_2075 PF00990 Diguanylate cyclase, GGDEF domain Avi_2076 PF05681 Fumarate hydratase (Fumerase) Avi_2076 PF05683 Fumarase C-terminus Avi_2077 PF10415 Fumarase C C-terminus Avi_2077 PF00206 Lyase Avi_2078 PF03734 L,D-transpeptidase catalytic domain Avi_2078 PF01471 Putative peptidoglycan binding domain Avi_2080 PF13419 Haloacid dehalogenase-like hydrolase Avi_2081 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Avi_2085 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Avi_2085 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_2087 PF01474 Class-II DAHP synthetase family Avi_2092 PF00115 Cytochrome C and Quinol oxidase polypeptide I Avi_2096 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Avi_2096 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Avi_2098 PF00563 EAL domain Avi_2098 PF01590 GAF domain Avi_2098 PF00990 Diguanylate cyclase, GGDEF domain Avi_2098 PF00360 Phytochrome region Avi_2099 PF04851 Type III restriction enzyme, res subunit Avi_2099 PF02151 UvrB/uvrC motif Avi_2099 PF00271 Helicase conserved C-terminal domain Avi_2099 PF12344 Ultra-violet resistance protein B Avi_2099 PF17757 UvrB interaction domain Avi_2101 PF01979 Amidohydrolase family Avi_2107 PF00793 DAHP synthetase I family Avi_2109 PF00113 Enolase, C-terminal TIM barrel domain Avi_2109 PF03952 Enolase, N-terminal domain Avi_2112 PF00676 Dehydrogenase E1 component Avi_2114 PF00364 Biotin-requiring enzyme Avi_2114 PF02779 Transketolase, pyrimidine binding domain Avi_2114 PF02780 Transketolase, C-terminal domain Avi_2115 PF00364 Biotin-requiring enzyme Avi_2115 PF02817 e3 binding domain Avi_2115 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Avi_2120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Avi_2120 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_2123 PF04055 Radical SAM superfamily Avi_2123 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Avi_2124 PF01202 Shikimate kinase Avi_2127 PF07690 Major Facilitator Superfamily Avi_2127 PF00083 Sugar (and other) transporter Avi_2128 PF03364 Polyketide cyclase / dehydrase and lipid transport Avi_2130 PF18146 Damage-inducible protein CinA KH domain Avi_2130 PF02464 Competence-damaged protein Avi_2130 PF00994 Probable molybdopterin binding domain Avi_2131 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Avi_2131 PF02542 YgbB family Avi_2132 PF01207 Dihydrouridine synthase (Dus) Avi_2134 PF00989 PAS fold Avi_2134 PF00512 His Kinase A (phospho-acceptor) domain Avi_2134 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_2135 PF00072 Response regulator receiver domain Avi_2135 PF00158 Sigma-54 interaction domain Avi_2135 PF02954 Bacterial regulatory protein, Fis family Avi_2136 PF00672 HAMP domain Avi_2136 PF00512 His Kinase A (phospho-acceptor) domain Avi_2136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_2136 PF00989 PAS fold Avi_2137 PF00072 Response regulator receiver domain Avi_2137 PF00158 Sigma-54 interaction domain Avi_2137 PF02954 Bacterial regulatory protein, Fis family Avi_2139 PF17209 Hfq protein Avi_2142 PF01926 50S ribosome-binding GTPase Avi_2142 PF16360 GTP-binding GTPase Middle Region Avi_2142 PF13167 GTP-binding GTPase N-terminal Avi_2144 PF03819 MazG nucleotide pyrophosphohydrolase domain Avi_2146 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Avi_2146 PF10414 Sirohaem synthase dimerisation region Avi_2150 PF00970 Oxidoreductase FAD-binding domain Avi_2150 PF00175 Oxidoreductase NAD-binding domain Avi_2153 PF03330 Lytic transglycolase Avi_2153 PF05036 Sporulation related domain Avi_2154 PF07943 Penicillin-binding protein 5, C-terminal domain Avi_2154 PF00768 D-alanyl-D-alanine carboxypeptidase Avi_2155 PF02223 Thymidylate kinase Avi_2156 PF09115 DNA polymerase III, delta subunit, C terminal Avi_2157 PF01925 Sulfite exporter TauE/SafE Avi_2158 PF08264 Anticodon-binding domain of tRNA Avi_2158 PF09334 tRNA synthetases class I (M) Avi_2159 PF01026 TatD related DNase Avi_2160 PF12706 Beta-lactamase superfamily domain Avi_2160 PF03099 Biotin/lipoate A/B protein ligase family Avi_2161 PF00654 Voltage gated chloride channel Avi_2162 PF02683 Cytochrome C biogenesis protein transmembrane region Avi_2163 PF01494 FAD binding domain Avi_2166 PF00005 ABC transporter Avi_2169 PF02608 ABC transporter substrate-binding protein PnrA-like Avi_2170 PF12804 MobA-like NTP transferase domain Avi_2170 PF00132 Bacterial transferase hexapeptide (six repeats) Avi_2170 PF14602 Hexapeptide repeat of succinyl-transferase Avi_2171 PF01380 SIS domain Avi_2178 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2179 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2180 PF17912 MalK OB fold domain Avi_2180 PF00005 ABC transporter Avi_2182 PF01047 MarR family Avi_2182 PF00480 ROK family Avi_2183 PF02492 CobW/HypB/UreG, nucleotide-binding domain Avi_2183 PF07683 Cobalamin synthesis protein cobW C-terminal domain Avi_2184 PF01297 Zinc-uptake complex component A periplasmic Avi_2185 PF00005 ABC transporter Avi_2187 PF00950 ABC 3 transport family Avi_2188 PF01475 Ferric uptake regulator family Avi_2190 PF00132 Bacterial transferase hexapeptide (six repeats) Avi_2194 PF07943 Penicillin-binding protein 5, C-terminal domain Avi_2194 PF00768 D-alanyl-D-alanine carboxypeptidase Avi_2201 PF12951 Passenger-associated-transport-repeat Avi_2204 PF01734 Patatin-like phospholipase Avi_2205 PF01502 Phosphoribosyl-AMP cyclohydrolase Avi_2207 PF01227 GTP cyclohydrolase I Avi_2209 PF01809 Putative membrane protein insertion efficiency factor Avi_2211 PF03129 Anticodon binding domain Avi_2211 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Avi_2211 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Avi_2211 PF02824 TGS domain Avi_2215 PF02445 Quinolinate synthetase A protein Avi_2216 PF00890 FAD binding domain Avi_2216 PF02910 Fumarate reductase flavoprotein C-term Avi_2217 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Avi_2217 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Avi_2225 PF00583 Acetyltransferase (GNAT) family Avi_2226 PF01751 Toprim domain Avi_2226 PF00204 DNA gyrase B Avi_2226 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_2226 PF00986 DNA gyrase B subunit, carboxyl terminus Avi_2229 PF00072 Response regulator receiver domain Avi_2229 PF00990 Diguanylate cyclase, GGDEF domain Avi_2230 PF00121 Triosephosphate isomerase Avi_2232 PF03840 Preprotein translocase SecG subunit Avi_2233 PF06418 CTP synthase N-terminus Avi_2233 PF00117 Glutamine amidotransferase class-I Avi_2243 PF00111 2Fe-2S iron-sulfur cluster binding domain Avi_2246 PF00809 Pterin binding enzyme Avi_2248 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Avi_2252 PF02347 Glycine cleavage system P-protein Avi_2253 PF01597 Glycine cleavage H-protein Avi_2254 PF08669 Glycine cleavage T-protein C-terminal barrel domain Avi_2254 PF01571 Aminomethyltransferase folate-binding domain Avi_2259 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Avi_2261 PF00849 RNA pseudouridylate synthase Avi_2261 PF01479 S4 domain Avi_2262 PF13419 Haloacid dehalogenase-like hydrolase Avi_2266 PF00083 Sugar (and other) transporter Avi_2269 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Avi_2269 PF00460 Flagella basal body rod protein Avi_2269 PF07559 Flagellar basal body protein FlaE Avi_2270 PF04002 RadC-like JAB domain Avi_2271 PF00557 Metallopeptidase family M24 Avi_2273 PF03466 LysR substrate binding domain Avi_2273 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_2274 PF03601 Conserved hypothetical protein 698 Avi_2275 PF03749 Sugar fermentation stimulation protein RE domain Avi_2275 PF17746 SfsA N-terminal OB domain Avi_2276 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Avi_2278 PF00155 Aminotransferase class I and II Avi_2279 PF00742 Homoserine dehydrogenase Avi_2279 PF01842 ACT domain Avi_2279 PF03447 Homoserine dehydrogenase, NAD binding domain Avi_2280 PF02272 DHHA1 domain Avi_2280 PF17768 RecJ OB domain Avi_2280 PF01368 DHH family Avi_2283 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_2286 PF00313 'Cold-shock' DNA-binding domain Avi_2290 PF00589 Phage integrase family Avi_2290 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain Avi_2294 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Avi_2294 PF14579 Helix-hairpin-helix motif Avi_2294 PF07733 Bacterial DNA polymerase III alpha NTPase domain Avi_2294 PF02811 PHP domain Avi_2300 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system Avi_2343 PF10549 ORF11CD3 domain Avi_2343 PF09669 Phage regulatory protein Rha (Phage_pRha) Avi_2363 PF17191 RecG wedge domain Avi_2363 PF00270 DEAD/DEAH box helicase Avi_2363 PF00271 Helicase conserved C-terminal domain Avi_2366 PF03461 TRCF domain Avi_2366 PF00270 DEAD/DEAH box helicase Avi_2366 PF02559 CarD-like/TRCF domain Avi_2366 PF17757 UvrB interaction domain Avi_2366 PF00271 Helicase conserved C-terminal domain Avi_2368 PF00892 EamA-like transporter family Avi_2370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_2375 PF03951 Glutamine synthetase, beta-Grasp domain Avi_2375 PF00120 Glutamine synthetase, catalytic domain Avi_2376 PF00543 Nitrogen regulatory protein P-II Avi_2378 PF01256 Carbohydrate kinase Avi_2378 PF03853 YjeF-related protein N-terminus Avi_2381 PF17760 UvrA interaction domain Avi_2381 PF17755 UvrA DNA-binding domain Avi_2382 PF00436 Single-strand binding protein family Avi_2385 PF01914 MarC family integral membrane protein Avi_2386 PF03989 DNA gyrase C-terminal domain, beta-propeller Avi_2386 PF00521 DNA gyrase/topoisomerase IV, subunit A Avi_2388 PF00403 Heavy-metal-associated domain Avi_2390 PF12801 4Fe-4S binding domain Avi_2390 PF13746 4Fe-4S dicluster domain Avi_2390 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Avi_2391 PF05751 FixH Avi_2394 PF03597 Cytochrome oxidase maturation protein cbb3-type Avi_2396 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Avi_2396 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Avi_2397 PF12706 Beta-lactamase superfamily domain Avi_2399 PF01547 Bacterial extracellular solute-binding protein Avi_2402 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2404 PF00005 ABC transporter Avi_2404 PF17912 MalK OB fold domain Avi_2408 PF00248 Aldo/keto reductase family Avi_2409 PF04616 Glycosyl hydrolases family 43 Avi_2409 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain Avi_2412 PF01794 Ferric reductase like transmembrane component Avi_2413 PF00174 Oxidoreductase molybdopterin binding domain Avi_2414 PF00920 Dehydratase family Avi_2416 PF01810 LysE type translocator Avi_2417 PF00206 Lyase Avi_2417 PF10397 Adenylosuccinate lyase C-terminus Avi_2419 PF00834 Ribulose-phosphate 3 epimerase family Avi_2420 PF00106 short chain dehydrogenase Avi_2423 PF01613 Flavin reductase like domain Avi_2427 PF00264 Common central domain of tyrosinase Avi_2431 PF00271 Helicase conserved C-terminal domain Avi_2431 PF00270 DEAD/DEAH box helicase Avi_2432 PF01810 LysE type translocator Avi_2433 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Avi_2435 PF01458 Uncharacterized protein family (UPF0051) Avi_2436 PF00005 ABC transporter Avi_2438 PF01458 Uncharacterized protein family (UPF0051) Avi_2440 PF00266 Aminotransferase class-V Avi_2441 PF01883 Iron-sulfur cluster assembly protein Avi_2442 PF01521 Iron-sulphur cluster biosynthesis Avi_2445 PF01467 Cytidylyltransferase-like Avi_2446 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Avi_2448 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Avi_2450 PF02547 Queuosine biosynthesis protein Avi_2451 PF01702 Queuine tRNA-ribosyltransferase Avi_2455 PF02625 XdhC and CoxI family Avi_2455 PF13478 XdhC Rossmann domain Avi_2456 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Avi_2456 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Avi_2457 PF03450 CO dehydrogenase flavoprotein C-terminal domain Avi_2457 PF00941 FAD binding domain in molybdopterin dehydrogenase Avi_2459 PF10518 TAT (twin-arginine translocation) pathway signal sequence Avi_2459 PF01799 [2Fe-2S] binding domain Avi_2459 PF00111 2Fe-2S iron-sulfur cluster binding domain Avi_2460 PF00440 Bacterial regulatory proteins, tetR family Avi_2463 PF00512 His Kinase A (phospho-acceptor) domain Avi_2463 PF08448 PAS fold Avi_2463 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_2463 PF00072 Response regulator receiver domain Avi_2463 PF13188 PAS domain Avi_2467 PF01258 Prokaryotic dksA/traR C4-type zinc finger Avi_2470 PF04317 YcjX-like family, DUF463 Avi_2471 PF05128 Domain of unknown function (DUF697) Avi_2473 PF00491 Arginase family Avi_2476 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_2476 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Avi_2477 PF12706 Beta-lactamase superfamily domain Avi_2478 PF05698 Bacterial trigger factor protein (TF) C-terminus Avi_2478 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Avi_2478 PF05697 Bacterial trigger factor protein (TF) Avi_2484 PF12002 MgsA AAA+ ATPase C terminal Avi_2484 PF16193 AAA C-terminal domain Avi_2484 PF00004 ATPase family associated with various cellular activities (AAA) Avi_2485 PF13180 PDZ domain Avi_2485 PF00595 PDZ domain Avi_2490 PF17763 Glutaminase/Asparaginase C-terminal domain Avi_2490 PF00710 Asparaginase, N-terminal Avi_2492 PF00149 Calcineurin-like phosphoesterase Avi_2492 PF02872 5'-nucleotidase, C-terminal domain Avi_2495 PF00535 Glycosyl transferase family 2 Avi_2496 PF00585 C-terminal regulatory domain of Threonine dehydratase Avi_2496 PF00291 Pyridoxal-phosphate dependent enzyme Avi_2498 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2499 PF08402 TOBE domain Avi_2499 PF00005 ABC transporter Avi_2500 PF09347 Domain of unknown function (DUF1989) Avi_2502 PF00289 Biotin carboxylase, N-terminal domain Avi_2502 PF02785 Biotin carboxylase C-terminal domain Avi_2502 PF00364 Biotin-requiring enzyme Avi_2502 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_2506 PF08240 Alcohol dehydrogenase GroES-like domain Avi_2506 PF00107 Zinc-binding dehydrogenase Avi_2507 PF13673 Acetyltransferase (GNAT) domain Avi_2508 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Avi_2510 PF00756 Putative esterase Avi_2511 PF02684 Lipid-A-disaccharide synthetase Avi_2513 PF00132 Bacterial transferase hexapeptide (six repeats) Avi_2513 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Avi_2514 PF07977 FabA-like domain Avi_2515 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Avi_2515 PF00132 Bacterial transferase hexapeptide (six repeats) Avi_2517 PF07244 Surface antigen variable number repeat Avi_2517 PF01103 Surface antigen Avi_2518 PF17820 PDZ domain Avi_2518 PF02163 Peptidase family M50 Avi_2520 PF01255 Putative undecaprenyl diphosphate synthase Avi_2521 PF01765 Ribosome recycling factor Avi_2524 PF00696 Amino acid kinase family Avi_2525 PF00889 Elongation factor TS Avi_2528 PF00318 Ribosomal protein S2 Avi_2534 PF01230 HIT domain Avi_2537 PF00004 ATPase family associated with various cellular activities (AAA) Avi_2537 PF02861 Clp amino terminal domain, pathogenicity island component Avi_2537 PF17871 AAA lid domain Avi_2537 PF07724 AAA domain (Cdc48 subfamily) Avi_2537 PF10431 C-terminal, D2-small domain, of ClpB protein Avi_2538 PF02617 ATP-dependent Clp protease adaptor protein ClpS Avi_2542 PF00132 Bacterial transferase hexapeptide (six repeats) Avi_2542 PF06426 Serine acetyltransferase, N-terminal Avi_2545 PF00561 alpha/beta hydrolase fold Avi_2548 PF01494 FAD binding domain Avi_2549 PF01053 Cys/Met metabolism PLP-dependent enzyme Avi_2551 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_2552 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2553 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2554 PF00005 ABC transporter Avi_2557 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Avi_2557 PF02272 DHHA1 domain Avi_2557 PF01411 tRNA synthetases class II (A) Avi_2558 PF00154 recA bacterial DNA recombination protein Avi_2560 PF04227 Indigoidine synthase A like protein Avi_2561 PF01726 LexA DNA binding domain Avi_2561 PF00717 Peptidase S24-like Avi_2562 PF00753 Metallo-beta-lactamase superfamily Avi_2562 PF03772 Competence protein Avi_2563 PF00285 Citrate synthase, C-terminal domain Avi_2566 PF02885 Glycosyl transferase family, helical bundle domain Avi_2566 PF00591 Glycosyl transferase family, a/b domain Avi_2567 PF00218 Indole-3-glycerol phosphate synthase Avi_2568 PF01967 MoaC family Avi_2569 PF03453 MoeA N-terminal region (domain I and II) Avi_2569 PF03454 MoeA C-terminal region (domain IV) Avi_2569 PF00994 Probable molybdopterin binding domain Avi_2570 PF01569 PAP2 superfamily Avi_2571 PF07685 CobB/CobQ-like glutamine amidotransferase domain Avi_2574 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2575 PF00005 ABC transporter Avi_2575 PF00571 CBS domain Avi_2581 PF09992 Phosphodiester glycosidase Avi_2584 PF00551 Formyl transferase Avi_2585 PF00067 Cytochrome P450 Avi_2586 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_2586 PF03466 LysR substrate binding domain Avi_2590 PF01965 DJ-1/PfpI family Avi_2590 PF12833 Helix-turn-helix domain Avi_2594 PF13419 Haloacid dehalogenase-like hydrolase Avi_2595 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Avi_2598 PF10502 Signal peptidase, peptidase S26 Avi_2599 PF08471 Class II vitamin B12-dependent ribonucleotide reductase Avi_2599 PF02867 Ribonucleotide reductase, barrel domain Avi_2600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2600 PF00672 HAMP domain Avi_2602 PF00156 Phosphoribosyl transferase domain Avi_2606 PF02464 Competence-damaged protein Avi_2606 PF00994 Probable molybdopterin binding domain Avi_2606 PF18146 Damage-inducible protein CinA KH domain Avi_2608 PF00672 HAMP domain Avi_2608 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2609 PF01584 CheW-like domain Avi_2612 PF03315 Serine dehydratase beta chain Avi_2612 PF03313 Serine dehydratase alpha chain Avi_2617 PF09278 MerR, DNA binding Avi_2617 PF00376 MerR family regulatory protein Avi_2620 PF01769 Divalent cation transporter Avi_2620 PF00571 CBS domain Avi_2620 PF03448 MgtE intracellular N domain Avi_2621 PF03186 CobD/Cbib protein Avi_2622 PF00155 Aminotransferase class I and II Avi_2623 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Avi_2623 PF07685 CobB/CobQ-like glutamine amidotransferase domain Avi_2624 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Avi_2627 PF01888 CbiD Avi_2628 PF02571 Precorrin-6x reductase CbiJ/CobK Avi_2630 PF03975 CheD chemotactic sensory transduction Avi_2632 PF01156 Inosine-uridine preferring nucleoside hydrolase Avi_2635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Avi_2636 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Avi_2637 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Avi_2638 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Avi_2639 PF02570 Precorrin-8X methylmutase Avi_2641 PF01903 CbiX Avi_2642 PF01925 Sulfite exporter TauE/SafE Avi_2643 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Avi_2646 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Avi_2647 PF02514 CobN/Magnesium Chelatase Avi_2648 PF02492 CobW/HypB/UreG, nucleotide-binding domain Avi_2648 PF07683 Cobalamin synthesis protein cobW C-terminal domain Avi_2650 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Avi_2654 PF01134 Glucose inhibited division protein A Avi_2658 PF02355 Protein export membrane protein Avi_2658 PF07549 SecD/SecF GG Motif Avi_2659 PF02699 Preprotein translocase subunit Avi_2662 PF01476 LysM domain Avi_2662 PF01551 Peptidase family M23 Avi_2664 PF01975 Survival protein SurE Avi_2665 PF02403 Seryl-tRNA synthetase N-terminal domain Avi_2665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Avi_2666 PF00902 Sec-independent protein translocase protein (TatC) Avi_2667 PF02416 mttA/Hcf106 family Avi_2668 PF02416 mttA/Hcf106 family Avi_2670 PF04079 Segregation and condensation complex subunit ScpB Avi_2671 PF02616 Segregation and condensation protein ScpA Avi_2673 PF00933 Glycosyl hydrolase family 3 N terminal domain Avi_2675 PF03485 Arginyl tRNA synthetase N terminal domain Avi_2675 PF05746 DALR anticodon binding domain Avi_2675 PF00750 tRNA synthetases class I (R) Avi_2676 PF01966 HD domain Avi_2676 PF13286 Phosphohydrolase-associated domain Avi_2678 PF01521 Iron-sulphur cluster biosynthesis Avi_2681 PF08238 Sel1 repeat Avi_2683 PF00133 tRNA synthetases class I (I, L, M and V) Avi_2683 PF08264 Anticodon-binding domain of tRNA Avi_2683 PF10458 Valyl tRNA synthetase tRNA binding arm Avi_2686 PF02321 Outer membrane efflux protein Avi_2693 PF00459 Inositol monophosphatase family Avi_2694 PF03009 Glycerophosphoryl diester phosphodiesterase family Avi_2696 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2696 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_2697 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2698 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_2698 PF00005 ABC transporter Avi_2699 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_2699 PF00005 ABC transporter Avi_2700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_2701 PF00455 DeoR C terminal sensor domain Avi_2701 PF08220 DeoR-like helix-turn-helix domain Avi_2704 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_2704 PF03466 LysR substrate binding domain Avi_2706 PF08402 TOBE domain Avi_2706 PF00005 ABC transporter Avi_2707 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2708 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2709 PF01266 FAD dependent oxidoreductase Avi_2712 PF04324 BFD-like [2Fe-2S] binding domain Avi_2712 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_2714 PF02371 Transposase IS116/IS110/IS902 family Avi_2714 PF01548 Transposase Avi_2722 PF01061 ABC-2 type transporter Avi_2723 PF00005 ABC transporter Avi_2726 PF00072 Response regulator receiver domain Avi_2727 PF01266 FAD dependent oxidoreductase Avi_2727 PF01571 Aminomethyltransferase folate-binding domain Avi_2727 PF08669 Glycine cleavage T-protein C-terminal barrel domain Avi_2727 PF16350 FAD dependent oxidoreductase central domain Avi_2729 PF08241 Methyltransferase domain Avi_2730 PF00924 Mechanosensitive ion channel Avi_2730 PF12794 Mechanosensitive ion channel inner membrane domain 1 Avi_2730 PF12795 Mechanosensitive ion channel porin domain Avi_2734 PF01497 Periplasmic binding protein Avi_2735 PF01032 FecCD transport family Avi_2736 PF00005 ABC transporter Avi_2739 PF04185 Phosphoesterase family Avi_2741 PF03852 DNA mismatch endonuclease Vsr Avi_2742 PF00145 C-5 cytosine-specific DNA methylase Avi_2743 PF08676 MutL C terminal dimerisation domain Avi_2743 PF01119 DNA mismatch repair protein, C-terminal domain Avi_2751 PF01527 Transposase Avi_2753 PF13333 Integrase core domain Avi_2753 PF13276 HTH-like domain Avi_2753 PF00665 Integrase core domain Avi_2758 PF04717 Type VI secretion system, phage-baseplate injector Avi_2772 PF02567 Phenazine biosynthesis-like protein Avi_2775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2775 PF13426 PAS domain Avi_2775 PF08447 PAS fold Avi_2778 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Avi_2778 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Avi_2782 PF01625 Peptide methionine sulfoxide reductase Avi_2786 PF01037 Lrp/AsnC ligand binding domain Avi_2787 PF01177 Asp/Glu/Hydantoin racemase Avi_2789 PF00440 Bacterial regulatory proteins, tetR family Avi_2790 PF07690 Major Facilitator Superfamily Avi_2791 PF08447 PAS fold Avi_2791 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2791 PF13426 PAS domain Avi_2792 PF01638 HxlR-like helix-turn-helix Avi_2794 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Avi_2795 PF13411 MerR HTH family regulatory protein Avi_2795 PF07739 TipAS antibiotic-recognition domain Avi_2796 PF14490 Helix-hairpin-helix containing domain Avi_2796 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Avi_2796 PF13538 UvrD-like helicase C-terminal domain Avi_2798 PF00248 Aldo/keto reductase family Avi_2801 PF10369 Small subunit of acetolactate synthase Avi_2802 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Avi_2802 PF00205 Thiamine pyrophosphate enzyme, central domain Avi_2802 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Avi_2810 PF13302 Acetyltransferase (GNAT) domain Avi_2812 PF13180 PDZ domain Avi_2816 PF01145 SPFH domain / Band 7 family Avi_2818 PF01145 SPFH domain / Band 7 family Avi_2819 PF00186 Dihydrofolate reductase Avi_2820 PF07681 DoxX Avi_2822 PF00303 Thymidylate synthase Avi_2829 PF01565 FAD binding domain Avi_2829 PF02913 FAD linked oxidases, C-terminal domain Avi_2830 PF00005 ABC transporter Avi_2831 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2832 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2833 PF12849 PBP superfamily domain Avi_2836 PF00580 UvrD/REP helicase N-terminal domain Avi_2836 PF13361 UvrD-like helicase C-terminal domain Avi_2843 PF01011 PQQ enzyme repeat Avi_2845 PF00857 Isochorismatase family Avi_2846 PF02569 Pantoate-beta-alanine ligase Avi_2847 PF02548 Ketopantoate hydroxymethyltransferase Avi_2849 PF02910 Fumarate reductase flavoprotein C-term Avi_2849 PF00890 FAD binding domain Avi_2855 PF01321 Creatinase/Prolidase N-terminal domain Avi_2855 PF00557 Metallopeptidase family M24 Avi_2858 PF02630 SCO1/SenC Avi_2860 PF00672 HAMP domain Avi_2860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2861 PF01584 CheW-like domain Avi_2865 PF00929 Exonuclease Avi_2865 PF02811 PHP domain Avi_2865 PF11490 DNA polymerase III polC-type N-terminus II Avi_2865 PF07733 Bacterial DNA polymerase III alpha NTPase domain Avi_2865 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Avi_2865 PF14579 Helix-hairpin-helix motif Avi_2869 PF02203 Tar ligand binding domain homologue Avi_2869 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2869 PF00672 HAMP domain Avi_2870 PF00583 Acetyltransferase (GNAT) family Avi_2871 PF00270 DEAD/DEAH box helicase Avi_2871 PF00271 Helicase conserved C-terminal domain Avi_2873 PF01593 Flavin containing amine oxidoreductase Avi_2876 PF03120 NAD-dependent DNA ligase OB-fold domain Avi_2876 PF00533 BRCA1 C Terminus (BRCT) domain Avi_2876 PF01653 NAD-dependent DNA ligase adenylation domain Avi_2876 PF12826 Helix-hairpin-helix motif Avi_2876 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Avi_2878 PF13396 Phospholipase_D-nuclease N-terminal Avi_2878 PF13091 PLD-like domain Avi_2879 PF02463 RecF/RecN/SMC N terminal domain Avi_2880 PF13525 Outer membrane lipoprotein Avi_2881 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Avi_2882 PF12327 FtsZ family, C-terminal domain Avi_2882 PF00091 Tubulin/FtsZ family, GTPase domain Avi_2884 PF02491 SHS2 domain inserted in FTSA Avi_2885 PF03799 Cell division protein FtsQ Avi_2885 PF08478 POTRA domain, FtsQ-type Avi_2887 PF01820 D-ala D-ala ligase N-terminus Avi_2887 PF07478 D-ala D-ala ligase C-terminus Avi_2888 PF07690 Major Facilitator Superfamily Avi_2888 PF00083 Sugar (and other) transporter Avi_2889 PF01565 FAD binding domain Avi_2889 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Avi_2890 PF01225 Mur ligase family, catalytic domain Avi_2890 PF02875 Mur ligase family, glutamate ligase domain Avi_2890 PF08245 Mur ligase middle domain Avi_2891 PF04101 Glycosyltransferase family 28 C-terminal domain Avi_2891 PF03033 Glycosyltransferase family 28 N-terminal domain Avi_2892 PF01098 Cell cycle protein Avi_2893 PF08245 Mur ligase middle domain Avi_2894 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Avi_2894 PF00953 Glycosyl transferase family 4 Avi_2895 PF01225 Mur ligase family, catalytic domain Avi_2895 PF02875 Mur ligase family, glutamate ligase domain Avi_2895 PF08245 Mur ligase middle domain Avi_2896 PF01225 Mur ligase family, catalytic domain Avi_2896 PF02875 Mur ligase family, glutamate ligase domain Avi_2896 PF08245 Mur ligase middle domain Avi_2897 PF03717 Penicillin-binding Protein dimerisation domain Avi_2897 PF00905 Penicillin binding protein transpeptidase domain Avi_2899 PF02381 MraZ protein, putative antitoxin-like Avi_2900 PF01795 MraW methylase family Avi_2906 PF01510 N-acetylmuramoyl-L-alanine amidase Avi_2908 PF05099 Tellurite resistance protein TerB Avi_2908 PF00226 DnaJ domain Avi_2909 PF00365 Phosphofructokinase Avi_2919 PF01183 Glycosyl hydrolases family 25 Avi_2923 PF12833 Helix-turn-helix domain Avi_2923 PF01965 DJ-1/PfpI family Avi_2925 PF02219 Methylenetetrahydrofolate reductase Avi_2926 PF01209 ubiE/COQ5 methyltransferase family Avi_2927 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2927 PF00672 HAMP domain Avi_2927 PF02203 Tar ligand binding domain homologue Avi_2928 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2928 PF00672 HAMP domain Avi_2929 PF12848 ABC transporter Avi_2929 PF00005 ABC transporter Avi_2930 PF00445 Ribonuclease T2 family Avi_2931 PF12146 Serine aminopeptidase, S33 Avi_2932 PF00892 EamA-like transporter family Avi_2933 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Avi_2933 PF00205 Thiamine pyrophosphate enzyme, central domain Avi_2933 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Avi_2935 PF02627 Carboxymuconolactone decarboxylase family Avi_2936 PF01042 Endoribonuclease L-PSP Avi_2943 PF03734 L,D-transpeptidase catalytic domain Avi_2943 PF01476 LysM domain Avi_2944 PF07015 VirC1 protein Avi_2945 PF00465 Iron-containing alcohol dehydrogenase Avi_2949 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2950 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2951 PF00005 ABC transporter Avi_2951 PF08402 TOBE domain Avi_2952 PF13426 PAS domain Avi_2952 PF08447 PAS fold Avi_2952 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2955 PF00155 Aminotransferase class I and II Avi_2957 PF00196 Bacterial regulatory proteins, luxR family Avi_2957 PF03472 Autoinducer binding domain Avi_2958 PF01381 Helix-turn-helix Avi_2962 PF00376 MerR family regulatory protein Avi_2962 PF09278 MerR, DNA binding Avi_2966 PF02965 Vitamin B12 dependent methionine synthase, activation domain Avi_2966 PF00809 Pterin binding enzyme Avi_2966 PF02574 Homocysteine S-methyltransferase Avi_2966 PF02607 B12 binding domain Avi_2966 PF02310 B12 binding domain Avi_2972 PF00565 Staphylococcal nuclease homologue Avi_2977 PF00392 Bacterial regulatory proteins, gntR family Avi_2977 PF00155 Aminotransferase class I and II Avi_2978 PF00892 EamA-like transporter family Avi_2979 PF13505 Outer membrane protein beta-barrel domain Avi_2980 PF04402 Protein of unknown function (DUF541) Avi_2998 PF07030 Protein of unknown function (DUF1320) Avi_3001 PF10124 Mu-like prophage major head subunit gpT Avi_3006 PF06074 Protein of unknown function (DUF935) Avi_3008 PF03237 Terminase-like family Avi_3044 PF00665 Integrase core domain Avi_3045 PF01695 IstB-like ATP binding protein Avi_3078 PF00012 Hsp70 protein Avi_3086 PF00313 'Cold-shock' DNA-binding domain Avi_3088 PF03275 UDP-galactopyranose mutase Avi_3095 PF01894 Uncharacterised protein family UPF0047 Avi_3097 PF00990 Diguanylate cyclase, GGDEF domain Avi_3097 PF00563 EAL domain Avi_3097 PF13185 GAF domain Avi_3099 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3099 PF03466 LysR substrate binding domain Avi_3102 PF07687 Peptidase dimerisation domain Avi_3102 PF01546 Peptidase family M20/M25/M40 Avi_3104 PF04545 Sigma-70, region 4 Avi_3104 PF04539 Sigma-70 region 3 Avi_3104 PF00140 Sigma-70 factor, region 1.2 Avi_3104 PF04542 Sigma-70 region 2 Avi_3104 PF03979 Sigma-70 factor, region 1.1 Avi_3104 PF04546 Sigma-70, non-essential region Avi_3106 PF10410 DnaB-helicase binding domain of primase Avi_3106 PF08278 DNA primase DnaG DnaB-binding Avi_3106 PF08275 DNA primase catalytic core, N-terminal domain Avi_3106 PF01807 CHC2 zinc finger Avi_3107 PF02632 BioY family Avi_3108 PF04055 Radical SAM superfamily Avi_3108 PF06968 Biotin and Thiamin Synthesis associated domain Avi_3111 PF00117 Glutamine amidotransferase class-I Avi_3111 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Avi_3112 PF01554 MatE Avi_3113 PF03466 LysR substrate binding domain Avi_3113 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3114 PF00248 Aldo/keto reductase family Avi_3115 PF04228 Putative neutral zinc metallopeptidase Avi_3122 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Avi_3122 PF02142 MGS-like domain Avi_3122 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_3127 PF01272 Transcription elongation factor, GreA/GreB, C-term Avi_3127 PF03449 Transcription elongation factor, N-terminal Avi_3128 PF00534 Glycosyl transferases group 1 Avi_3138 PF01037 Lrp/AsnC ligand binding domain Avi_3139 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_3141 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3141 PF03466 LysR substrate binding domain Avi_3143 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Avi_3145 PF03466 LysR substrate binding domain Avi_3145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3147 PF01699 Sodium/calcium exchanger protein Avi_3156 PF00313 'Cold-shock' DNA-binding domain Avi_3159 PF00753 Metallo-beta-lactamase superfamily Avi_3163 PF12802 MarR family Avi_3164 PF00072 Response regulator receiver domain Avi_3164 PF00486 Transcriptional regulatory protein, C terminal Avi_3166 PF00512 His Kinase A (phospho-acceptor) domain Avi_3166 PF16527 Two-component sensor protein CpxA, periplasmic domain Avi_3166 PF00672 HAMP domain Avi_3166 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_3167 PF01588 Putative tRNA binding domain Avi_3168 PF03807 NADP oxidoreductase coenzyme F420-dependent Avi_3168 PF14748 Pyrroline-5-carboxylate reductase dimerisation Avi_3171 PF01790 Prolipoprotein diacylglyceryl transferase Avi_3174 PF05195 Aminopeptidase P, N-terminal domain Avi_3174 PF00557 Metallopeptidase family M24 Avi_3177 PF14572 Phosphoribosyl synthetase-associated domain Avi_3177 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Avi_3181 PF00171 Aldehyde dehydrogenase family Avi_3183 PF13426 PAS domain Avi_3183 PF02954 Bacterial regulatory protein, Fis family Avi_3183 PF00158 Sigma-54 interaction domain Avi_3185 PF14693 Ribosomal protein TL5, C-terminal domain Avi_3185 PF01386 Ribosomal L25p family Avi_3187 PF00990 Diguanylate cyclase, GGDEF domain Avi_3187 PF00563 EAL domain Avi_3187 PF03707 Bacterial signalling protein N terminal repeat Avi_3190 PF01195 Peptidyl-tRNA hydrolase Avi_3193 PF02617 ATP-dependent Clp protease adaptor protein ClpS Avi_3194 PF06071 Protein of unknown function (DUF933) Avi_3194 PF01926 50S ribosome-binding GTPase Avi_3198 PF00255 Glutathione peroxidase Avi_3201 PF00156 Phosphoribosyl transferase domain Avi_3203 PF00032 Cytochrome b(C-terminal)/b6/petD Avi_3203 PF02167 Cytochrome C1 family Avi_3203 PF00033 Cytochrome b/b6/petB Avi_3204 PF00033 Cytochrome b/b6/petB Avi_3204 PF00032 Cytochrome b(C-terminal)/b6/petD Avi_3205 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Avi_3205 PF00355 Rieske [2Fe-2S] domain Avi_3208 PF00005 ABC transporter Avi_3208 PF00664 ABC transporter transmembrane region Avi_3210 PF00583 Acetyltransferase (GNAT) family Avi_3213 PF00664 ABC transporter transmembrane region Avi_3213 PF00005 ABC transporter Avi_3216 PF00588 SpoU rRNA Methylase family Avi_3219 PF00669 Bacterial flagellin N-terminal helical region Avi_3219 PF00700 Bacterial flagellin C-terminal helical region Avi_3221 PF01218 Coproporphyrinogen III oxidase Avi_3226 PF01743 Poly A polymerase head domain Avi_3226 PF13735 tRNA nucleotidyltransferase domain 2 putative Avi_3226 PF12627 Probable RNA and SrmB- binding site of polymerase A Avi_3227 PF00293 NUDIX domain Avi_3229 PF07726 ATPase family associated with various cellular activities (AAA) Avi_3229 PF17863 AAA lid domain Avi_3235 PF00583 Acetyltransferase (GNAT) family Avi_3238 PF00753 Metallo-beta-lactamase superfamily Avi_3241 PF13409 Glutathione S-transferase, N-terminal domain Avi_3242 PF00293 NUDIX domain Avi_3244 PF00574 Clp protease Avi_3247 PF03594 Benzoate membrane transport protein Avi_3249 PF08502 LeuA allosteric (dimerisation) domain Avi_3249 PF00682 HMGL-like Avi_3250 PF01037 Lrp/AsnC ligand binding domain Avi_3250 PF13404 AsnC-type helix-turn-helix domain Avi_3254 PF04717 Type VI secretion system, phage-baseplate injector Avi_3259 PF04715 Anthranilate synthase component I, N terminal region Avi_3259 PF00425 chorismate binding enzyme Avi_3259 PF00117 Glutamine amidotransferase class-I Avi_3261 PF01545 Cation efflux family Avi_3261 PF16916 Dimerisation domain of Zinc Transporter Avi_3262 PF14489 QueF-like protein Avi_3268 PF04955 HupE / UreJ protein Avi_3269 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Avi_3272 PF01268 Formate--tetrahydrofolate ligase Avi_3273 PF00196 Bacterial regulatory proteins, luxR family Avi_3273 PF03472 Autoinducer binding domain Avi_3277 PF00265 Thymidine kinase Avi_3282 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3283 PF00571 CBS domain Avi_3283 PF00005 ABC transporter Avi_3285 PF01022 Bacterial regulatory protein, arsR family Avi_3287 PF00202 Aminotransferase class-III Avi_3294 PF13458 Periplasmic binding protein Avi_3297 PF13382 Adenine deaminase C-terminal domain Avi_3297 PF01979 Amidohydrolase family Avi_3299 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system Avi_3300 PF00128 Alpha amylase, catalytic domain Avi_3301 PF00534 Glycosyl transferases group 1 Avi_3301 PF13439 Glycosyltransferase Family 4 Avi_3302 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Avi_3302 PF01926 50S ribosome-binding GTPase Avi_3309 PF05992 SbmA/BacA-like family Avi_3313 PF00557 Metallopeptidase family M24 Avi_3314 PF00296 Luciferase-like monooxygenase Avi_3316 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Avi_3316 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Avi_3320 PF01799 [2Fe-2S] binding domain Avi_3320 PF00111 2Fe-2S iron-sulfur cluster binding domain Avi_3321 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Avi_3321 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Avi_3323 PF13181 Tetratricopeptide repeat Avi_3324 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3324 PF03466 LysR substrate binding domain Avi_3326 PF01979 Amidohydrolase family Avi_3328 PF00005 ABC transporter Avi_3330 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3331 PF00764 Arginosuccinate synthase Avi_3332 PF01037 Lrp/AsnC ligand binding domain Avi_3336 PF00512 His Kinase A (phospho-acceptor) domain Avi_3336 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_3337 PF00486 Transcriptional regulatory protein, C terminal Avi_3337 PF00072 Response regulator receiver domain Avi_3340 PF00576 HIUase/Transthyretin family Avi_3341 PF04115 Ureidoglycolate lyase Avi_3342 PF00975 Thioesterase domain Avi_3342 PF00668 Condensation domain Avi_3342 PF13193 AMP-binding enzyme C-terminal domain Avi_3342 PF00501 AMP-binding enzyme Avi_3342 PF00550 Phosphopantetheine attachment site Avi_3344 PF03951 Glutamine synthetase, beta-Grasp domain Avi_3344 PF00120 Glutamine synthetase, catalytic domain Avi_3347 PF09349 OHCU decarboxylase Avi_3347 PF01014 Uricase Avi_3348 PF08240 Alcohol dehydrogenase GroES-like domain Avi_3348 PF00107 Zinc-binding dehydrogenase Avi_3353 PF00990 Diguanylate cyclase, GGDEF domain Avi_3358 PF01266 FAD dependent oxidoreductase Avi_3359 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Avi_3359 PF01266 FAD dependent oxidoreductase Avi_3360 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Avi_3360 PF00072 Response regulator receiver domain Avi_3360 PF01627 Hpt domain Avi_3360 PF00512 His Kinase A (phospho-acceptor) domain Avi_3360 PF00672 HAMP domain Avi_3360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_3362 PF00270 DEAD/DEAH box helicase Avi_3362 PF00271 Helicase conserved C-terminal domain Avi_3364 PF00732 GMC oxidoreductase Avi_3364 PF05199 GMC oxidoreductase Avi_3366 PF00464 Serine hydroxymethyltransferase Avi_3366 PF00596 Class II Aldolase and Adducin N-terminal domain Avi_3369 PF01638 HxlR-like helix-turn-helix Avi_3374 PF11799 impB/mucB/samB family C-terminal domain Avi_3374 PF00817 impB/mucB/samB family Avi_3377 PF01276 Orn/Lys/Arg decarboxylase, major domain Avi_3377 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Avi_3377 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Avi_3392 PF04717 Type VI secretion system, phage-baseplate injector Avi_3402 PF01695 IstB-like ATP binding protein Avi_3403 PF00665 Integrase core domain Avi_3404 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Avi_3404 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Avi_3407 PF13817 IS66 C-terminal element Avi_3407 PF03050 Transposase IS66 family Avi_3407 PF13005 zinc-finger binding domain of transposase IS66 Avi_3407 PF13007 Transposase C of IS166 homeodomain Avi_3408 PF05717 IS66 Orf2 like protein Avi_3411 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Avi_3414 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Avi_3414 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Avi_3415 PF03466 LysR substrate binding domain Avi_3415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3429 PF12802 MarR family Avi_3432 PF08240 Alcohol dehydrogenase GroES-like domain Avi_3432 PF00107 Zinc-binding dehydrogenase Avi_3433 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3433 PF03466 LysR substrate binding domain Avi_3436 PF14403 Circularly permuted ATP-grasp type 2 Avi_3436 PF04168 A predicted alpha-helical domain with a conserved ER motif. Avi_3437 PF14403 Circularly permuted ATP-grasp type 2 Avi_3440 PF02796 Helix-turn-helix domain of resolvase Avi_3440 PF00239 Resolvase, N terminal domain Avi_3444 PF01152 Bacterial-like globin Avi_3448 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_3448 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Avi_3449 PF01180 Dihydroorotate dehydrogenase Avi_3451 PF03707 Bacterial signalling protein N terminal repeat Avi_3451 PF00990 Diguanylate cyclase, GGDEF domain Avi_3451 PF00563 EAL domain Avi_3453 PF08362 YcdC-like protein, C-terminal region Avi_3453 PF00440 Bacterial regulatory proteins, tetR family Avi_3455 PF07687 Peptidase dimerisation domain Avi_3455 PF01546 Peptidase family M20/M25/M40 Avi_3457 PF01979 Amidohydrolase family Avi_3458 PF00005 ABC transporter Avi_3459 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3460 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3464 PF00873 AcrB/AcrD/AcrF family Avi_3467 PF00753 Metallo-beta-lactamase superfamily Avi_3468 PF02492 CobW/HypB/UreG, nucleotide-binding domain Avi_3469 PF01730 UreF Avi_3470 PF02814 UreE urease accessory protein, N-terminal domain Avi_3470 PF05194 UreE urease accessory protein, C-terminal domain Avi_3471 PF08448 PAS fold Avi_3471 PF00990 Diguanylate cyclase, GGDEF domain Avi_3471 PF00563 EAL domain Avi_3473 PF08534 Redoxin Avi_3477 PF01979 Amidohydrolase family Avi_3477 PF00449 Urease alpha-subunit, N-terminal domain Avi_3481 PF07007 Lysozyme inhibitor LprI Avi_3482 PF00699 Urease beta subunit Avi_3484 PF06906 Protein of unknown function (DUF1272) Avi_3485 PF00547 Urease, gamma subunit Avi_3486 PF01774 UreD urease accessory protein Avi_3489 PF00005 ABC transporter Avi_3490 PF12399 Branched-chain amino acid ATP-binding cassette transporter Avi_3490 PF00005 ABC transporter Avi_3492 PF02653 Branched-chain amino acid transport system / permease component Avi_3495 PF01126 Heme oxygenase Avi_3496 PF01590 GAF domain Avi_3496 PF00360 Phytochrome region Avi_3496 PF08446 PAS fold Avi_3496 PF00512 His Kinase A (phospho-acceptor) domain Avi_3496 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_3498 PF09308 LuxQ, periplasmic Avi_3498 PF00512 His Kinase A (phospho-acceptor) domain Avi_3498 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_3498 PF00072 Response regulator receiver domain Avi_3499 PF00072 Response regulator receiver domain Avi_3503 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Avi_3506 PF03776 Septum formation topological specificity factor MinE Avi_3507 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Avi_3508 PF03775 Septum formation inhibitor MinC, C-terminal domain Avi_3510 PF13458 Periplasmic binding protein Avi_3512 PF00005 ABC transporter Avi_3513 PF12399 Branched-chain amino acid ATP-binding cassette transporter Avi_3513 PF00005 ABC transporter Avi_3514 PF11862 Domain of unknown function (DUF3382) Avi_3514 PF02653 Branched-chain amino acid transport system / permease component Avi_3515 PF02653 Branched-chain amino acid transport system / permease component Avi_3517 PF00440 Bacterial regulatory proteins, tetR family Avi_3518 PF07690 Major Facilitator Superfamily Avi_3519 PF00009 Elongation factor Tu GTP binding domain Avi_3520 PF00459 Inositol monophosphatase family Avi_3523 PF02397 Bacterial sugar transferase Avi_3527 PF00486 Transcriptional regulatory protein, C terminal Avi_3527 PF00072 Response regulator receiver domain Avi_3528 PF00196 Bacterial regulatory proteins, luxR family Avi_3528 PF00072 Response regulator receiver domain Avi_3529 PF10090 Histidine phosphotransferase C-terminal domain Avi_3534 PF00588 SpoU rRNA Methylase family Avi_3536 PF00849 RNA pseudouridylate synthase Avi_3537 PF01266 FAD dependent oxidoreductase Avi_3537 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Avi_3538 PF04545 Sigma-70, region 4 Avi_3538 PF00140 Sigma-70 factor, region 1.2 Avi_3538 PF04542 Sigma-70 region 2 Avi_3540 PF02040 Arsenical pump membrane protein Avi_3544 PF00709 Adenylosuccinate synthetase Avi_3546 PF00149 Calcineurin-like phosphoesterase Avi_3547 PF02633 Creatinine amidohydrolase Avi_3548 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3548 PF03466 LysR substrate binding domain Avi_3551 PF00005 ABC transporter Avi_3553 PF07969 Amidohydrolase family Avi_3554 PF01565 FAD binding domain Avi_3554 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Avi_3555 PF02525 Flavodoxin-like fold Avi_3559 PF00171 Aldehyde dehydrogenase family Avi_3560 PF03167 Uracil DNA glycosylase superfamily Avi_3561 PF03328 HpcH/HpaI aldolase/citrate lyase family Avi_3568 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3569 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3570 PF00005 ABC transporter Avi_3570 PF08402 TOBE domain Avi_3572 PF01232 Mannitol dehydrogenase Rossmann domain Avi_3572 PF08125 Mannitol dehydrogenase C-terminal domain Avi_3573 PF13419 Haloacid dehalogenase-like hydrolase Avi_3574 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Avi_3574 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Avi_3577 PF07715 TonB-dependent Receptor Plug Domain Avi_3577 PF00593 TonB dependent receptor Avi_3579 PF01032 FecCD transport family Avi_3581 PF00005 ABC transporter Avi_3585 PF07715 TonB-dependent Receptor Plug Domain Avi_3585 PF00593 TonB dependent receptor Avi_3592 PF02322 Cytochrome bd terminal oxidase subunit II Avi_3593 PF01654 Cytochrome bd terminal oxidase subunit I Avi_3595 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Avi_3595 PF01842 ACT domain Avi_3595 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Avi_3602 PF13505 Outer membrane protein beta-barrel domain Avi_3603 PF00296 Luciferase-like monooxygenase Avi_3604 PF02075 Crossover junction endodeoxyribonuclease RuvC Avi_3605 PF07499 RuvA, C-terminal domain Avi_3605 PF01330 RuvA N terminal domain Avi_3606 PF15937 prlF antitoxin for toxin YhaV_toxin Avi_3609 PF17864 RuvB AAA lid domain Avi_3609 PF05496 Holliday junction DNA helicase RuvB P-loop domain Avi_3609 PF05491 RuvB C-terminal winged helix domain Avi_3610 PF00149 Calcineurin-like phosphoesterase Avi_3610 PF10518 TAT (twin-arginine translocation) pathway signal sequence Avi_3611 PF00293 NUDIX domain Avi_3612 PF00293 NUDIX domain Avi_3616 PF03061 Thioesterase superfamily Avi_3618 PF01618 MotA/TolQ/ExbB proton channel family Avi_3619 PF02472 Biopolymer transport protein ExbD/TolR Avi_3621 PF04052 TolB amino-terminal domain Avi_3621 PF07676 WD40-like Beta Propeller Repeat Avi_3622 PF00691 OmpA family Avi_3626 PF01171 PP-loop family Avi_3627 PF06480 FtsH Extracellular Avi_3627 PF00004 ATPase family associated with various cellular activities (AAA) Avi_3627 PF01434 Peptidase family M41 Avi_3627 PF17862 AAA+ lid domain Avi_3629 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Avi_3629 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Avi_3629 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Avi_3629 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Avi_3631 PF01709 Transcriptional regulator Avi_3634 PF02080 TrkA-C domain Avi_3634 PF03471 Transporter associated domain Avi_3634 PF00999 Sodium/hydrogen exchanger family Avi_3637 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Avi_3637 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Avi_3638 PF00456 Transketolase, thiamine diphosphate binding domain Avi_3638 PF02780 Transketolase, C-terminal domain Avi_3638 PF02779 Transketolase, pyrimidine binding domain Avi_3647 PF02203 Tar ligand binding domain homologue Avi_3647 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_3647 PF00672 HAMP domain Avi_3649 PF01812 5-formyltetrahydrofolate cyclo-ligase family Avi_3650 PF13277 YmdB-like protein Avi_3651 PF00162 Phosphoglycerate kinase Avi_3652 PF00274 Fructose-bisphosphate aldolase class-I Avi_3665 PF01197 Ribosomal protein L31 Avi_3667 PF00005 ABC transporter Avi_3667 PF00664 ABC transporter transmembrane region Avi_3668 PF00890 FAD binding domain Avi_3670 PF00691 OmpA family Avi_3670 PF01389 OmpA-like transmembrane domain Avi_3672 PF00459 Inositol monophosphatase family Avi_3675 PF02581 Thiamine monophosphate synthase Avi_3678 PF01022 Bacterial regulatory protein, arsR family Avi_3683 PF00731 AIR carboxylase Avi_3684 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Avi_3684 PF02222 ATP-grasp domain Avi_3686 PF00444 Ribosomal protein L36 Avi_3689 PF12697 Alpha/beta hydrolase family Avi_3690 PF02887 Pyruvate kinase, alpha/beta domain Avi_3690 PF00224 Pyruvate kinase, barrel domain Avi_3695 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) Avi_3699 PF00072 Response regulator receiver domain Avi_3699 PF02954 Bacterial regulatory protein, Fis family Avi_3699 PF00158 Sigma-54 interaction domain Avi_3703 PF04715 Anthranilate synthase component I, N terminal region Avi_3703 PF00425 chorismate binding enzyme Avi_3703 PF00117 Glutamine amidotransferase class-I Avi_3704 PF01063 Amino-transferase class IV Avi_3707 PF16653 Saccharopine dehydrogenase C-terminal domain Avi_3707 PF03435 Saccharopine dehydrogenase NADP binding domain Avi_3711 PF00149 Calcineurin-like phosphoesterase Avi_3711 PF02872 5'-nucleotidase, C-terminal domain Avi_3712 PF00762 Ferrochelatase Avi_3714 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_3714 PF00672 HAMP domain Avi_3714 PF02203 Tar ligand binding domain homologue Avi_3716 PF04055 Radical SAM superfamily Avi_3717 PF01242 6-pyruvoyl tetrahydropterin synthase Avi_3719 PF06508 Queuosine biosynthesis protein QueC Avi_3720 PF16200 C-terminal region of band_7 Avi_3720 PF01145 SPFH domain / Band 7 family Avi_3722 PF00571 CBS domain Avi_3722 PF01380 SIS domain Avi_3724 PF00483 Nucleotidyl transferase Avi_3727 PF13406 Transglycosylase SLT domain Avi_3729 PF02203 Tar ligand binding domain homologue Avi_3729 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_3729 PF00672 HAMP domain Avi_3730 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Avi_3730 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_3732 PF01850 PIN domain Avi_3734 PF04898 Glutamate synthase central domain Avi_3734 PF01645 Conserved region in glutamate synthase Avi_3734 PF00310 Glutamine amidotransferases class-II Avi_3734 PF01493 GXGXG motif Avi_3736 PF01212 Beta-eliminating lyase Avi_3739 PF00011 Hsp20/alpha crystallin family Avi_3743 PF00459 Inositol monophosphatase family Avi_3746 PF00072 Response regulator receiver domain Avi_3749 PF00924 Mechanosensitive ion channel Avi_3751 PF01050 Mannose-6-phosphate isomerase Avi_3751 PF00483 Nucleotidyl transferase Avi_3754 PF04168 A predicted alpha-helical domain with a conserved ER motif. Avi_3754 PF14403 Circularly permuted ATP-grasp type 2 Avi_3755 PF08379 Bacterial transglutaminase-like N-terminal region Avi_3755 PF01841 Transglutaminase-like superfamily Avi_3758 PF00343 Carbohydrate phosphorylase Avi_3760 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Avi_3760 PF02806 Alpha amylase, C-terminal all-beta domain Avi_3760 PF00128 Alpha amylase, catalytic domain Avi_3761 PF00483 Nucleotidyl transferase Avi_3762 PF08323 Starch synthase catalytic domain Avi_3762 PF00534 Glycosyl transferases group 1 Avi_3763 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Avi_3763 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Avi_3763 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Avi_3763 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Avi_3764 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Avi_3764 PF18390 Glycogen debranching enzyme C-terminal domain Avi_3764 PF00128 Alpha amylase, catalytic domain Avi_3765 PF01575 MaoC like domain Avi_3768 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Avi_3774 PF01266 FAD dependent oxidoreductase Avi_3775 PF01165 Ribosomal protein S21 Avi_3777 PF17806 Sarcosine oxidase A3 domain Avi_3777 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_3777 PF08669 Glycine cleavage T-protein C-terminal barrel domain Avi_3777 PF01571 Aminomethyltransferase folate-binding domain Avi_3778 PF04268 Sarcosine oxidase, gamma subunit family Avi_3780 PF01638 HxlR-like helix-turn-helix Avi_3781 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ Avi_3782 PF04221 RelB antitoxin Avi_3785 PF05016 ParE toxin of type II toxin-antitoxin system, parDE Avi_3789 PF03480 Bacterial extracellular solute-binding protein, family 7 Avi_3790 PF07722 Peptidase C26 Avi_3791 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Avi_3791 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Avi_3792 PF00356 Bacterial regulatory proteins, lacI family Avi_3793 PF01047 MarR family Avi_3794 PF02633 Creatinine amidohydrolase Avi_3796 PF02492 CobW/HypB/UreG, nucleotide-binding domain Avi_3796 PF07683 Cobalamin synthesis protein cobW C-terminal domain Avi_3799 PF00672 HAMP domain Avi_3799 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_3800 PF03922 OmpW family Avi_3802 PF03150 Di-haem cytochrome c peroxidase Avi_3806 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Avi_3806 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Avi_3808 PF03466 LysR substrate binding domain Avi_3808 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3816 PF01081 KDPG and KHG aldolase Avi_3821 PF13280 WYL domain Avi_3821 PF08279 HTH domain Avi_3825 PF00990 Diguanylate cyclase, GGDEF domain Avi_3825 PF13426 PAS domain Avi_3825 PF00563 EAL domain Avi_3827 PF00232 Glycosyl hydrolase family 1 Avi_3830 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_3830 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Avi_3832 PF01261 Xylose isomerase-like TIM barrel Avi_3833 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Avi_3833 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Avi_3834 PF00356 Bacterial regulatory proteins, lacI family Avi_3836 PF07690 Major Facilitator Superfamily Avi_3837 PF13533 Biotin-lipoyl like Avi_3838 PF00440 Bacterial regulatory proteins, tetR family Avi_3838 PF17922 Tetracyclin repressor-like, C-terminal domain Avi_3839 PF03471 Transporter associated domain Avi_3839 PF03741 Integral membrane protein TerC family Avi_3842 PF00730 HhH-GPD superfamily base excision DNA repair protein Avi_3842 PF10576 Iron-sulfur binding domain of endonuclease III Avi_3842 PF00633 Helix-hairpin-helix motif Avi_3845 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Avi_3845 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Avi_3849 PF13936 Helix-turn-helix domain Avi_3849 PF04198 Putative sugar-binding domain Avi_3850 PF00923 Transaldolase/Fructose-6-phosphate aldolase Avi_3856 PF00152 tRNA synthetases class II (D, K and N) Avi_3856 PF01336 OB-fold nucleic acid binding domain Avi_3858 PF00749 tRNA synthetases class I (E and Q), catalytic domain Avi_3860 PF02080 TrkA-C domain Avi_3860 PF03600 Citrate transporter Avi_3863 PF03412 Peptidase C39 family Avi_3863 PF00005 ABC transporter Avi_3863 PF00664 ABC transporter transmembrane region Avi_3871 PF00005 ABC transporter Avi_3871 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_3872 PF01546 Peptidase family M20/M25/M40 Avi_3872 PF07687 Peptidase dimerisation domain Avi_3874 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_3875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_3876 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3878 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_3878 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3880 PF00005 ABC transporter Avi_3881 PF13533 Biotin-lipoyl like Avi_3882 PF03576 Peptidase family S58 Avi_3883 PF07969 Amidohydrolase family Avi_3884 PF00005 ABC transporter Avi_3884 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_3885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_3885 PF00005 ABC transporter Avi_3887 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3888 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_3889 PF01244 Membrane dipeptidase (Peptidase family M19) Avi_3890 PF00294 pfkB family carbohydrate kinase Avi_3891 PF07729 FCD domain Avi_3891 PF00392 Bacterial regulatory proteins, gntR family Avi_3892 PF02614 Glucuronate isomerase Avi_3893 PF07883 Cupin domain Avi_3894 PF04962 KduI/IolB family Avi_3896 PF01232 Mannitol dehydrogenase Rossmann domain Avi_3896 PF08125 Mannitol dehydrogenase C-terminal domain Avi_3897 PF03786 D-mannonate dehydratase (UxuA) Avi_3898 PF08666 SAF domain Avi_3898 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Avi_3899 PF02233 NAD(P) transhydrogenase beta subunit Avi_3900 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Avi_3900 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Avi_3900 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Avi_3902 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3902 PF03466 LysR substrate binding domain Avi_3903 PF13407 Periplasmic binding protein domain Avi_3905 PF00005 ABC transporter Avi_3906 PF02653 Branched-chain amino acid transport system / permease component Avi_3909 PF00920 Dehydratase family Avi_3910 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_3912 PF00171 Aldehyde dehydrogenase family Avi_3914 PF05035 2-keto-3-deoxy-galactonokinase Avi_3915 PF01081 KDPG and KHG aldolase Avi_3917 PF04304 Protein of unknown function (DUF454) Avi_3918 PF00892 EamA-like transporter family Avi_3919 PF00392 Bacterial regulatory proteins, gntR family Avi_3919 PF07729 FCD domain Avi_3920 PF07690 Major Facilitator Superfamily Avi_3921 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Avi_3921 PF00207 Alpha-2-macroglobulin family Avi_3921 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Avi_3921 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain Avi_3921 PF01835 MG2 domain Avi_3921 PF07703 Alpha-2-macroglobulin bait region domain Avi_3921 PF17962 Bacterial macroglobulin domain 6 Avi_3921 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Avi_3922 PF06832 Penicillin-Binding Protein C-terminus Family Avi_3922 PF00905 Penicillin binding protein transpeptidase domain Avi_3922 PF00912 Transglycosylase Avi_3923 PF00672 HAMP domain Avi_3923 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_3924 PF16363 GDP-mannose 4,6 dehydratase Avi_3926 PF00534 Glycosyl transferases group 1 Avi_3926 PF13439 Glycosyltransferase Family 4 Avi_3928 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3928 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_3929 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3931 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_3932 PF00005 ABC transporter Avi_3932 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_3935 PF00534 Glycosyl transferases group 1 Avi_3935 PF13439 Glycosyltransferase Family 4 Avi_3939 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Avi_3939 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Avi_3939 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Avi_3945 PF00149 Calcineurin-like phosphoesterase Avi_3945 PF12320 Type 5 capsule protein repressor C-terminal domain Avi_3946 PF13476 AAA domain Avi_3947 PF00672 HAMP domain Avi_3947 PF02203 Tar ligand binding domain homologue Avi_3947 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_3949 PF08460 Bacterial SH3 domain Avi_3949 PF01551 Peptidase family M23 Avi_3951 PF00004 ATPase family associated with various cellular activities (AAA) Avi_3951 PF10431 C-terminal, D2-small domain, of ClpB protein Avi_3951 PF02861 Clp amino terminal domain, pathogenicity island component Avi_3951 PF07724 AAA domain (Cdc48 subfamily) Avi_3951 PF17871 AAA lid domain Avi_3954 PF17827 PrmC N-terminal domain Avi_3954 PF05175 Methyltransferase small domain Avi_3955 PF03462 PCRF domain Avi_3955 PF00472 RF-1 domain Avi_3956 PF05524 PEP-utilising enzyme, N-terminal Avi_3956 PF00391 PEP-utilising enzyme, mobile domain Avi_3956 PF01590 GAF domain Avi_3956 PF02896 PEP-utilising enzyme, TIM barrel domain Avi_3957 PF01842 ACT domain Avi_3957 PF00696 Amino acid kinase family Avi_3957 PF13840 ACT domain Avi_3961 PF03706 Lysylphosphatidylglycerol synthase TM region Avi_3961 PF09924 Uncharacterised conserved protein (DUF2156) Avi_3965 PF08241 Methyltransferase domain Avi_3968 PF00795 Carbon-nitrogen hydrolase Avi_3969 PF00462 Glutaredoxin Avi_3970 PF00156 Phosphoribosyl transferase domain Avi_3971 PF08241 Methyltransferase domain Avi_3976 PF00293 NUDIX domain Avi_3979 PF01960 ArgJ family Avi_3982 PF02810 SEC-C motif Avi_3982 PF07516 SecA Wing and Scaffold domain Avi_3982 PF01043 SecA preprotein cross-linking domain Avi_3982 PF07517 SecA DEAD-like domain Avi_3985 PF00501 AMP-binding enzyme Avi_3985 PF13193 AMP-binding enzyme C-terminal domain Avi_3988 PF00990 Diguanylate cyclase, GGDEF domain Avi_3988 PF17151 Periplasmic sensor domain Avi_3989 PF13683 Integrase core domain Avi_3989 PF13276 HTH-like domain Avi_3993 PF00248 Aldo/keto reductase family Avi_3994 PF03466 LysR substrate binding domain Avi_3994 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_4004 PF00749 tRNA synthetases class I (E and Q), catalytic domain Avi_4006 PF00106 short chain dehydrogenase Avi_4008 PF01923 Cobalamin adenosyltransferase Avi_4010 PF01012 Electron transfer flavoprotein domain Avi_4012 PF01012 Electron transfer flavoprotein domain Avi_4012 PF00766 Electron transfer flavoprotein FAD-binding domain Avi_4013 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_4013 PF00672 HAMP domain Avi_4015 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Avi_4015 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Avi_4016 PF08534 Redoxin Avi_4017 PF14698 Argininosuccinate lyase C-terminal Avi_4017 PF00206 Lyase Avi_4020 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Avi_4020 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Avi_4023 PF00072 Response regulator receiver domain Avi_4027 PF00005 ABC transporter Avi_4031 PF04752 ChaC-like protein Avi_4033 PF02153 Prephenate dehydrogenase Avi_4034 PF00155 Aminotransferase class I and II Avi_4035 PF01209 ubiE/COQ5 methyltransferase family Avi_4036 PF00753 Metallo-beta-lactamase superfamily Avi_4036 PF16123 Hydroxyacylglutathione hydrolase C-terminus Avi_4041 PF00830 Ribosomal L28 family Avi_4043 PF02592 Putative vitamin uptake transporter Avi_4045 PF06213 Cobalamin biosynthesis protein CobT Avi_4045 PF11775 Cobalamin biosynthesis protein CobT VWA domain Avi_4046 PF12556 Cobaltochelatase CobS subunit N terminal Avi_4046 PF08406 CbbQ/NirQ/NorQ C-terminal Avi_4046 PF07728 AAA domain (dynein-related subfamily) Avi_4048 PF00226 DnaJ domain Avi_4050 PF01722 BolA-like protein Avi_4051 PF01761 3-dehydroquinate synthase Avi_4053 PF01202 Shikimate kinase Avi_4056 PF00589 Phage integrase family Avi_4056 PF02899 Phage integrase, N-terminal SAM-like domain Avi_4057 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Avi_4058 PF03734 L,D-transpeptidase catalytic domain Avi_4059 PF01206 Sulfurtransferase TusA Avi_4060 PF02492 CobW/HypB/UreG, nucleotide-binding domain Avi_4060 PF07683 Cobalamin synthesis protein cobW C-terminal domain Avi_4061 PF07943 Penicillin-binding protein 5, C-terminal domain Avi_4061 PF00768 D-alanyl-D-alanine carboxypeptidase Avi_4064 PF01594 AI-2E family transporter Avi_4066 PF00196 Bacterial regulatory proteins, luxR family Avi_4066 PF03472 Autoinducer binding domain Avi_4068 PF01514 Secretory protein of YscJ/FliF family Avi_4068 PF08345 Flagellar M-ring protein C-terminal Avi_4071 PF03975 CheD chemotactic sensory transduction Avi_4072 PF00072 Response regulator receiver domain Avi_4073 PF01339 CheB methylesterase Avi_4073 PF00072 Response regulator receiver domain Avi_4074 PF01739 CheR methyltransferase, SAM binding domain Avi_4074 PF03705 CheR methyltransferase, all-alpha domain Avi_4076 PF01584 CheW-like domain Avi_4077 PF02895 Signal transducing histidine kinase, homodimeric domain Avi_4077 PF01627 Hpt domain Avi_4077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_4077 PF01584 CheW-like domain Avi_4081 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_4083 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Avi_4083 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Avi_4083 PF13288 DXP reductoisomerase C-terminal domain Avi_4084 PF00144 Beta-lactamase Avi_4085 PF00155 Aminotransferase class I and II Avi_4088 PF17243 POTRA domain TamA domain 1 Avi_4088 PF07244 Surface antigen variable number repeat Avi_4088 PF01103 Surface antigen Avi_4091 PF08447 PAS fold Avi_4091 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_4091 PF13426 PAS domain Avi_4092 PF01584 CheW-like domain Avi_4093 PF07690 Major Facilitator Superfamily Avi_4096 PF02634 FdhD/NarQ family Avi_4097 PF12838 4Fe-4S dicluster domain Avi_4097 PF00384 Molybdopterin oxidoreductase Avi_4097 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Avi_4097 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Avi_4097 PF01568 Molydopterin dinucleotide binding domain Avi_4098 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Avi_4098 PF00037 4Fe-4S binding domain Avi_4098 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Avi_4101 PF03466 LysR substrate binding domain Avi_4101 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_4102 PF01022 Bacterial regulatory protein, arsR family Avi_4103 PF00056 lactate/malate dehydrogenase, NAD binding domain Avi_4103 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Avi_4104 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Avi_4106 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Avi_4106 PF02874 ATP synthase alpha/beta family, beta-barrel domain Avi_4107 PF00231 ATP synthase Avi_4108 PF00306 ATP synthase alpha/beta chain, C terminal domain Avi_4108 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Avi_4108 PF02874 ATP synthase alpha/beta family, beta-barrel domain Avi_4110 PF00213 ATP synthase delta (OSCP) subunit Avi_4112 PF17764 3′ DNA-binding domain (3′BD) Avi_4112 PF18074 Primosomal protein N C-terminal domain Avi_4112 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Avi_4112 PF00270 DEAD/DEAH box helicase Avi_4113 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_4113 PF00672 HAMP domain Avi_4114 PF02899 Phage integrase, N-terminal SAM-like domain Avi_4114 PF00589 Phage integrase family Avi_4116 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Avi_4116 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_4118 PF01810 LysE type translocator Avi_4121 PF02817 e3 binding domain Avi_4121 PF00364 Biotin-requiring enzyme Avi_4121 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Avi_4122 PF00676 Dehydrogenase E1 component Avi_4122 PF02779 Transketolase, pyrimidine binding domain Avi_4122 PF16870 2-oxoglutarate dehydrogenase C-terminal Avi_4122 PF16078 2-oxoglutarate dehydrogenase N-terminus Avi_4124 PF00549 CoA-ligase Avi_4124 PF02629 CoA binding domain Avi_4127 PF08442 ATP-grasp domain Avi_4127 PF00549 CoA-ligase Avi_4129 PF00056 lactate/malate dehydrogenase, NAD binding domain Avi_4129 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Avi_4130 PF03969 AFG1-like ATPase Avi_4132 PF02974 Protease inhibitor Inh Avi_4134 PF13085 2Fe-2S iron-sulfur cluster binding domain Avi_4134 PF13237 4Fe-4S dicluster domain Avi_4135 PF02910 Fumarate reductase flavoprotein C-term Avi_4135 PF00890 FAD binding domain Avi_4137 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Avi_4143 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Avi_4143 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Avi_4144 PF00814 Glycoprotease family Avi_4145 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Avi_4145 PF03900 Porphobilinogen deaminase, C-terminal domain Avi_4150 PF00117 Glutamine amidotransferase class-I Avi_4151 PF07690 Major Facilitator Superfamily Avi_4152 PF02325 YGGT family Avi_4153 PF02594 Uncharacterised ACR, YggU family COG1872 Avi_4154 PF00719 Inorganic pyrophosphatase Avi_4157 PF16655 PhoD-like phosphatase, N-terminal domain Avi_4157 PF09423 PhoD-like phosphatase Avi_4158 PF01432 Peptidase family M3 Avi_4159 PF07690 Major Facilitator Superfamily Avi_4161 PF00764 Arginosuccinate synthase Avi_4164 PF01810 LysE type translocator Avi_4168 PF04055 Radical SAM superfamily Avi_4174 PF01329 Pterin 4 alpha carbinolamine dehydratase Avi_4176 PF02834 LigT like Phosphoesterase Avi_4178 PF13472 GDSL-like Lipase/Acylhydrolase family Avi_4180 PF00005 ABC transporter Avi_4182 PF01027 Inhibitor of apoptosis-promoting Bax1 Avi_4187 PF00330 Aconitase family (aconitate hydratase) Avi_4187 PF00694 Aconitase C-terminal domain Avi_4188 PF00005 ABC transporter Avi_4189 PF03379 CcmB protein Avi_4191 PF01578 Cytochrome C assembly protein Avi_4193 PF08534 Redoxin Avi_4194 PF10755 Protein of unknown function (DUF2585) Avi_4195 PF04279 Intracellular septation protein A Avi_4196 PF02881 SRP54-type protein, helical bundle domain Avi_4196 PF00448 SRP54-type protein, GTPase domain Avi_4197 PF04055 Radical SAM superfamily Avi_4197 PF00919 Uncharacterized protein family UPF0004 Avi_4198 PF01678 Diaminopimelate epimerase Avi_4200 PF12706 Beta-lactamase superfamily domain Avi_4203 PF02881 SRP54-type protein, helical bundle domain Avi_4203 PF02978 Signal peptide binding domain Avi_4203 PF00448 SRP54-type protein, GTPase domain Avi_4204 PF02153 Prephenate dehydrogenase Avi_4204 PF01817 Chorismate mutase type II Avi_4205 PF00886 Ribosomal protein S16 Avi_4207 PF05239 PRC-barrel domain Avi_4207 PF01782 RimM N-terminal domain Avi_4208 PF01746 tRNA (Guanine-1)-methyltransferase Avi_4210 PF01245 Ribosomal protein L19 Avi_4214 PF04234 CopC domain Avi_4216 PF13115 YtkA-like Avi_4216 PF05425 Copper resistance protein D Avi_4216 PF04234 CopC domain Avi_4217 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_4218 PF00528 Binding-protein-dependent transport system inner membrane component Avi_4223 PF00330 Aconitase family (aconitate hydratase) Avi_4225 PF00248 Aldo/keto reductase family Avi_4227 PF00072 Response regulator receiver domain Avi_4227 PF00486 Transcriptional regulatory protein, C terminal Avi_4235 PF03548 Outer membrane lipoprotein carrier protein LolA Avi_4236 PF01580 FtsK/SpoIIIE family Avi_4236 PF09397 Ftsk gamma domain Avi_4236 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Avi_4236 PF17854 FtsK alpha domain Avi_4237 PF00909 Ammonium Transporter Family Avi_4239 PF00543 Nitrogen regulatory protein P-II Avi_4242 PF01494 FAD binding domain Avi_4243 PF03966 Trm112p-like protein Avi_4244 PF02190 ATP-dependent protease La (LON) substrate-binding domain Avi_4244 PF00004 ATPase family associated with various cellular activities (AAA) Avi_4244 PF05362 Lon protease (S16) C-terminal proteolytic domain Avi_4245 PF00085 Thioredoxin Avi_4248 PF07690 Major Facilitator Superfamily Avi_4249 PF01263 Aldose 1-epimerase Avi_4253 PF04204 Homoserine O-succinyltransferase Avi_4254 PF07724 AAA domain (Cdc48 subfamily) Avi_4254 PF17871 AAA lid domain Avi_4254 PF02861 Clp amino terminal domain, pathogenicity island component Avi_4254 PF00004 ATPase family associated with various cellular activities (AAA) Avi_4254 PF10431 C-terminal, D2-small domain, of ClpB protein Avi_4259 PF01165 Ribosomal protein S21 Avi_4266 PF01547 Bacterial extracellular solute-binding protein Avi_4267 PF00528 Binding-protein-dependent transport system inner membrane component Avi_4268 PF00005 ABC transporter Avi_4269 PF01435 Peptidase family M48 Avi_4270 PF04545 Sigma-70, region 4 Avi_4270 PF00140 Sigma-70 factor, region 1.2 Avi_4270 PF04542 Sigma-70 region 2 Avi_4272 PF00183 Hsp90 protein Avi_4273 PF00210 Ferritin-like domain Avi_4277 PF02590 Predicted SPOUT methyltransferase Avi_4279 PF01467 Cytidylyltransferase-like Avi_4280 PF00171 Aldehyde dehydrogenase family Avi_4281 PF00696 Amino acid kinase family Avi_4281 PF01472 PUA domain Avi_4282 PF01926 50S ribosome-binding GTPase Avi_4282 PF01018 GTP1/OBG Avi_4287 PF01016 Ribosomal L27 protein Avi_4288 PF00829 Ribosomal prokaryotic L21 protein Avi_4290 PF05159 Capsule polysaccharide biosynthesis protein Avi_4291 PF05159 Capsule polysaccharide biosynthesis protein Avi_4292 PF02142 MGS-like domain Avi_4292 PF01808 AICARFT/IMPCHase bienzyme Avi_4295 PF01189 16S rRNA methyltransferase RsmB/F Avi_4295 PF01029 NusB family Avi_4296 PF01435 Peptidase family M48 Avi_4300 PF03572 Peptidase family S41 Avi_4300 PF13180 PDZ domain Avi_4302 PF00293 NUDIX domain Avi_4303 PF13614 AAA domain Avi_4309 PF01339 CheB methylesterase Avi_4309 PF00072 Response regulator receiver domain Avi_4310 PF01739 CheR methyltransferase, SAM binding domain Avi_4310 PF03705 CheR methyltransferase, all-alpha domain Avi_4311 PF01584 CheW-like domain Avi_4312 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_4312 PF02203 Tar ligand binding domain homologue Avi_4312 PF00672 HAMP domain Avi_4313 PF00672 HAMP domain Avi_4313 PF17202 Single cache domain 3 Avi_4313 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_4314 PF02203 Tar ligand binding domain homologue Avi_4314 PF00672 HAMP domain Avi_4314 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_4315 PF01584 CheW-like domain Avi_4316 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_4316 PF02895 Signal transducing histidine kinase, homodimeric domain Avi_4316 PF07194 P2 response regulator binding domain Avi_4316 PF01627 Hpt domain Avi_4316 PF01584 CheW-like domain Avi_4317 PF00072 Response regulator receiver domain Avi_4319 PF00072 Response regulator receiver domain Avi_4322 PF14850 DNA-binding domain of Proline dehydrogenase Avi_4322 PF01619 Proline dehydrogenase Avi_4322 PF00171 Aldehyde dehydrogenase family Avi_4322 PF18327 Proline utilization A proline dehydrogenase N-terminal domain Avi_4324 PF01037 Lrp/AsnC ligand binding domain Avi_4327 PF01205 Uncharacterized protein family UPF0029 Avi_4328 PF00106 short chain dehydrogenase Avi_4329 PF00155 Aminotransferase class I and II Avi_4330 PF16197 Ketoacyl-synthetase C-terminal extension Avi_4330 PF08659 KR domain Avi_4330 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_4330 PF00550 Phosphopantetheine attachment site Avi_4330 PF00698 Acyl transferase domain Avi_4330 PF08240 Alcohol dehydrogenase GroES-like domain Avi_4330 PF08990 Erythronolide synthase docking Avi_4330 PF14765 Polyketide synthase dehydratase Avi_4330 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_4331 PF07690 Major Facilitator Superfamily Avi_4332 PF04551 GcpE protein Avi_4333 PF13488 Glycine zipper Avi_4333 PF00691 OmpA family Avi_4337 PF00348 Polyprenyl synthetase Avi_4339 PF00912 Transglycosylase Avi_4342 PF01783 Ribosomal L32p protein family Avi_4343 PF05233 PHB accumulation regulatory domain Avi_4343 PF07879 PHB/PHA accumulation regulator DNA-binding domain Avi_4344 PF02803 Thiolase, C-terminal domain Avi_4344 PF00108 Thiolase, N-terminal domain Avi_4348 PF01479 S4 domain Avi_4350 PF00037 4Fe-4S binding domain Avi_4350 PF11953 Domain of unknown function (DUF3470) Avi_4356 PF03328 HpcH/HpaI aldolase/citrate lyase family Avi_4358 PF00694 Aconitase C-terminal domain Avi_4359 PF00180 Isocitrate/isopropylmalate dehydrogenase Avi_4360 PF01569 PAP2 superfamily Avi_4361 PF08946 Osmosensory transporter coiled coil Avi_4361 PF00083 Sugar (and other) transporter Avi_4363 PF02774 Semialdehyde dehydrogenase, dimerisation domain Avi_4363 PF01118 Semialdehyde dehydrogenase, NAD binding domain Avi_4366 PF00484 Carbonic anhydrase Avi_4367 PF08543 Phosphomethylpyrimidine kinase Avi_4368 PF05088 Bacterial NAD-glutamate dehydrogenase Avi_4370 PF06165 Glycosyltransferase family 36 Avi_4370 PF10091 Putative glucoamylase Avi_4370 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Avi_4372 PF07687 Peptidase dimerisation domain Avi_4372 PF01546 Peptidase family M20/M25/M40 Avi_4373 PF00664 ABC transporter transmembrane region Avi_4373 PF00005 ABC transporter Avi_4375 PF02785 Biotin carboxylase C-terminal domain Avi_4375 PF02436 Conserved carboxylase domain Avi_4375 PF00682 HMGL-like Avi_4375 PF00364 Biotin-requiring enzyme Avi_4375 PF00289 Biotin carboxylase, N-terminal domain Avi_4375 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_4377 PF16177 Acetyl-coenzyme A synthetase N-terminus Avi_4377 PF13193 AMP-binding enzyme C-terminal domain Avi_4377 PF00501 AMP-binding enzyme Avi_4380 PF01168 Alanine racemase, N-terminal domain Avi_4381 PF13603 Leucyl-tRNA synthetase, Domain 2 Avi_4381 PF08264 Anticodon-binding domain of tRNA Avi_4381 PF00133 tRNA synthetases class I (I, L, M and V) Avi_4385 PF02195 ParB-like nuclease domain Avi_4385 PF17762 HTH domain found in ParB protein Avi_4386 PF13614 AAA domain Avi_4387 PF02527 rRNA small subunit methyltransferase G Avi_4389 PF01134 Glucose inhibited division protein A Avi_4389 PF13932 GidA associated domain Avi_4390 PF10396 GTP-binding protein TrmE N-terminus Avi_4390 PF12631 MnmE helical domain Avi_4390 PF01926 50S ribosome-binding GTPase Avi_4391 PF07497 Rho termination factor, RNA-binding domain Avi_4391 PF07498 Rho termination factor, N-terminal domain Avi_4391 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Avi_4393 PF01208 Uroporphyrinogen decarboxylase (URO-D) Avi_5000 PF13614 AAA domain Avi_5001 PF07506 RepB plasmid partitioning protein Avi_5001 PF02195 ParB-like nuclease domain Avi_5002 PF11800 Replication protein C C-terminal region Avi_5002 PF03428 Replication protein C N-terminal domain Avi_5003 PF13091 PLD-like domain Avi_5004 PF03706 Lysylphosphatidylglycerol synthase TM region Avi_5006 PF05899 Protein of unknown function (DUF861) Avi_5006 PF07883 Cupin domain Avi_5010 PF01037 Lrp/AsnC ligand binding domain Avi_5012 PF00005 ABC transporter Avi_5014 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_5015 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5016 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5017 PF02574 Homocysteine S-methyltransferase Avi_5018 PF01032 FecCD transport family Avi_5021 PF00005 ABC transporter Avi_5022 PF01546 Peptidase family M20/M25/M40 Avi_5024 PF08323 Starch synthase catalytic domain Avi_5024 PF00534 Glycosyl transferases group 1 Avi_5029 PF13593 SBF-like CPA transporter family (DUF4137) Avi_5030 PF00107 Zinc-binding dehydrogenase Avi_5030 PF08240 Alcohol dehydrogenase GroES-like domain Avi_5031 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Avi_5031 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Avi_5034 PF01202 Shikimate kinase Avi_5035 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Avi_5035 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Avi_5038 PF00356 Bacterial regulatory proteins, lacI family Avi_5041 PF02653 Branched-chain amino acid transport system / permease component Avi_5042 PF00005 ABC transporter Avi_5045 PF07756 Protein of unknown function (DUF1612) Avi_5045 PF11972 HTH DNA binding domain Avi_5046 PF13407 Periplasmic binding protein domain Avi_5049 PF00005 ABC transporter Avi_5050 PF02653 Branched-chain amino acid transport system / permease component Avi_5051 PF02653 Branched-chain amino acid transport system / permease component Avi_5052 PF00392 Bacterial regulatory proteins, gntR family Avi_5052 PF07729 FCD domain Avi_5053 PF00171 Aldehyde dehydrogenase family Avi_5054 PF00171 Aldehyde dehydrogenase family Avi_5056 PF03737 Aldolase/RraA Avi_5057 PF00920 Dehydratase family Avi_5058 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5059 PF00005 ABC transporter Avi_5061 PF07729 FCD domain Avi_5061 PF00392 Bacterial regulatory proteins, gntR family Avi_5062 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_5063 PF00881 Nitroreductase family Avi_5067 PF01740 STAS domain Avi_5067 PF00916 Sulfate permease family Avi_5068 PF00582 Universal stress protein family Avi_5073 PF16859 Tetracyclin repressor-like, C-terminal domain Avi_5073 PF00440 Bacterial regulatory proteins, tetR family Avi_5074 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_5077 PF01613 Flavin reductase like domain Avi_5082 PF01557 Fumarylacetoacetate (FAA) hydrolase family Avi_5085 PF00392 Bacterial regulatory proteins, gntR family Avi_5085 PF07729 FCD domain Avi_5086 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5087 PF00232 Glycosyl hydrolase family 1 Avi_5088 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5089 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_5089 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5090 PF01979 Amidohydrolase family Avi_5094 PF03841 L-seryl-tRNA selenium transferase Avi_5096 PF00990 Diguanylate cyclase, GGDEF domain Avi_5096 PF01590 GAF domain Avi_5096 PF00360 Phytochrome region Avi_5096 PF00563 EAL domain Avi_5103 PF01799 [2Fe-2S] binding domain Avi_5103 PF10518 TAT (twin-arginine translocation) pathway signal sequence Avi_5103 PF00111 2Fe-2S iron-sulfur cluster binding domain Avi_5106 PF00941 FAD binding domain in molybdopterin dehydrogenase Avi_5106 PF03450 CO dehydrogenase flavoprotein C-terminal domain Avi_5107 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Avi_5107 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Avi_5108 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_5108 PF00512 His Kinase A (phospho-acceptor) domain Avi_5108 PF01627 Hpt domain Avi_5108 PF00072 Response regulator receiver domain Avi_5109 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5109 PF03466 LysR substrate binding domain Avi_5112 PF00561 alpha/beta hydrolase fold Avi_5113 PF00106 short chain dehydrogenase Avi_5114 PF01272 Transcription elongation factor, GreA/GreB, C-term Avi_5114 PF03449 Transcription elongation factor, N-terminal Avi_5115 PF02056 Family 4 glycosyl hydrolase Avi_5115 PF11975 Family 4 glycosyl hydrolase C-terminal domain Avi_5116 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5116 PF00005 ABC transporter Avi_5117 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_5117 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5118 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5121 PF02056 Family 4 glycosyl hydrolase Avi_5121 PF11975 Family 4 glycosyl hydrolase C-terminal domain Avi_5122 PF12833 Helix-turn-helix domain Avi_5122 PF01497 Periplasmic binding protein Avi_5125 PF00072 Response regulator receiver domain Avi_5125 PF00486 Transcriptional regulatory protein, C terminal Avi_5127 PF00226 DnaJ domain Avi_5128 PF00107 Zinc-binding dehydrogenase Avi_5128 PF08240 Alcohol dehydrogenase GroES-like domain Avi_5129 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Avi_5129 PF13378 Enolase C-terminal domain-like Avi_5131 PF00248 Aldo/keto reductase family Avi_5134 PF02653 Branched-chain amino acid transport system / permease component Avi_5135 PF00005 ABC transporter Avi_5136 PF00392 Bacterial regulatory proteins, gntR family Avi_5136 PF07729 FCD domain Avi_5138 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5139 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5140 PF00005 ABC transporter Avi_5140 PF17912 MalK OB fold domain Avi_5143 PF00356 Bacterial regulatory proteins, lacI family Avi_5146 PF00005 ABC transporter Avi_5146 PF12399 Branched-chain amino acid ATP-binding cassette transporter Avi_5148 PF02653 Branched-chain amino acid transport system / permease component Avi_5150 PF00005 ABC transporter Avi_5151 PF00672 HAMP domain Avi_5151 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_5152 PF00296 Luciferase-like monooxygenase Avi_5154 PF00296 Luciferase-like monooxygenase Avi_5155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_5155 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_5156 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_5156 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_5156 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_5157 PF00248 Aldo/keto reductase family Avi_5160 PF02653 Branched-chain amino acid transport system / permease component Avi_5161 PF00005 ABC transporter Avi_5162 PF13407 Periplasmic binding protein domain Avi_5163 PF01053 Cys/Met metabolism PLP-dependent enzyme Avi_5167 PF00005 ABC transporter Avi_5168 PF02653 Branched-chain amino acid transport system / permease component Avi_5169 PF02653 Branched-chain amino acid transport system / permease component Avi_5170 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_5171 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5172 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5173 PF00005 ABC transporter Avi_5175 PF03972 MmgE/PrpD family Avi_5178 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_5179 PF00296 Luciferase-like monooxygenase Avi_5181 PF00005 ABC transporter Avi_5181 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5182 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5182 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_5183 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5184 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5188 PF00196 Bacterial regulatory proteins, luxR family Avi_5188 PF00072 Response regulator receiver domain Avi_5189 PF00512 His Kinase A (phospho-acceptor) domain Avi_5189 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_5189 PF00672 HAMP domain Avi_5190 PF00141 Peroxidase Avi_5192 PF04074 YhcH/YjgK/YiaL Avi_5193 PF00701 Dihydrodipicolinate synthetase family Avi_5194 PF07690 Major Facilitator Superfamily Avi_5195 PF00356 Bacterial regulatory proteins, lacI family Avi_5196 PF00296 Luciferase-like monooxygenase Avi_5198 PF00296 Luciferase-like monooxygenase Avi_5199 PF01546 Peptidase family M20/M25/M40 Avi_5199 PF07687 Peptidase dimerisation domain Avi_5208 PF00296 Luciferase-like monooxygenase Avi_5209 PF00672 HAMP domain Avi_5209 PF00512 His Kinase A (phospho-acceptor) domain Avi_5209 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_5210 PF00486 Transcriptional regulatory protein, C terminal Avi_5210 PF00072 Response regulator receiver domain Avi_5212 PF00873 AcrB/AcrD/AcrF family Avi_5215 PF14525 AraC-binding-like domain Avi_5216 PF00296 Luciferase-like monooxygenase Avi_5217 PF01613 Flavin reductase like domain Avi_5219 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Avi_5219 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_5219 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_5226 PF00171 Aldehyde dehydrogenase family Avi_5228 PF12833 Helix-turn-helix domain Avi_5229 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Avi_5229 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Avi_5230 PF00596 Class II Aldolase and Adducin N-terminal domain Avi_5231 PF00202 Aminotransferase class-III Avi_5235 PF00106 short chain dehydrogenase Avi_5243 PF08281 Sigma-70, region 4 Avi_5243 PF04542 Sigma-70 region 2 Avi_5247 PF08274 PhnA Zinc-Ribbon Avi_5247 PF03831 PhnA domain Avi_5248 PF01011 PQQ enzyme repeat Avi_5249 PF00480 ROK family Avi_5249 PF01047 MarR family Avi_5252 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5253 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5254 PF00005 ABC transporter Avi_5254 PF17912 MalK OB fold domain Avi_5255 PF03009 Glycerophosphoryl diester phosphodiesterase family Avi_5261 PF18417 L-lysine epsilon oxidase C-terminal domain Avi_5261 PF17990 L-Lysine epsilon oxidase N-terminal Avi_5263 PF03334 Na+/H+ antiporter subunit Avi_5264 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Avi_5265 PF01899 Na+/H+ ion antiporter subunit Avi_5266 PF00361 Proton-conducting membrane transporter Avi_5268 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Avi_5269 PF13244 Domain of unknown function (DUF4040) Avi_5269 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Avi_5269 PF00361 Proton-conducting membrane transporter Avi_5269 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Avi_5270 PF02608 ABC transporter substrate-binding protein PnrA-like Avi_5271 PF01425 Amidase Avi_5276 PF07969 Amidohydrolase family Avi_5280 PF02633 Creatinine amidohydrolase Avi_5281 PF13454 FAD-NAD(P)-binding Avi_5282 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5283 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5284 PF00005 ABC transporter Avi_5284 PF08402 TOBE domain Avi_5285 PF13416 Bacterial extracellular solute-binding protein Avi_5286 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5286 PF03466 LysR substrate binding domain Avi_5287 PF17874 MalT-like TPR region Avi_5287 PF00196 Bacterial regulatory proteins, luxR family Avi_5288 PF01425 Amidase Avi_5289 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5290 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5292 PF00005 ABC transporter Avi_5292 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5293 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5293 PF00005 ABC transporter Avi_5294 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5294 PF00005 ABC transporter Avi_5297 PF01266 FAD dependent oxidoreductase Avi_5300 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5301 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5301 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_5304 PF00005 ABC transporter Avi_5307 PF02653 Branched-chain amino acid transport system / permease component Avi_5309 PF01047 MarR family Avi_5310 PF01613 Flavin reductase like domain Avi_5317 PF00043 Glutathione S-transferase, C-terminal domain Avi_5317 PF02798 Glutathione S-transferase, N-terminal domain Avi_5320 PF01557 Fumarylacetoacetate (FAA) hydrolase family Avi_5321 PF07995 Glucose / Sorbosone dehydrogenase Avi_5324 PF00534 Glycosyl transferases group 1 Avi_5326 PF18011 C-terminal domain found in long catalases Avi_5326 PF06628 Catalase-related immune-responsive Avi_5326 PF00199 Catalase Avi_5327 PF01384 Phosphate transporter family Avi_5328 PF17912 MalK OB fold domain Avi_5328 PF00005 ABC transporter Avi_5329 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5330 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5331 PF13416 Bacterial extracellular solute-binding protein Avi_5334 PF00171 Aldehyde dehydrogenase family Avi_5336 PF00480 ROK family Avi_5337 PF01791 DeoC/LacD family aldolase Avi_5338 PF04198 Putative sugar-binding domain Avi_5339 PF13407 Periplasmic binding protein domain Avi_5341 PF02653 Branched-chain amino acid transport system / permease component Avi_5342 PF00005 ABC transporter Avi_5344 PF01546 Peptidase family M20/M25/M40 Avi_5344 PF07687 Peptidase dimerisation domain Avi_5346 PF01053 Cys/Met metabolism PLP-dependent enzyme Avi_5347 PF00392 Bacterial regulatory proteins, gntR family Avi_5349 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5352 PF00005 ABC transporter Avi_5352 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5354 PF00005 ABC transporter Avi_5354 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5355 PF01321 Creatinase/Prolidase N-terminal domain Avi_5355 PF00557 Metallopeptidase family M24 Avi_5356 PF07729 FCD domain Avi_5356 PF00392 Bacterial regulatory proteins, gntR family Avi_5357 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5358 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5362 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5362 PF00005 ABC transporter Avi_5363 PF03738 Glutathionylspermidine synthase preATP-grasp Avi_5365 PF03994 Domain of Unknown Function (DUF350) Avi_5367 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) Avi_5371 PF13193 AMP-binding enzyme C-terminal domain Avi_5371 PF00501 AMP-binding enzyme Avi_5373 PF00392 Bacterial regulatory proteins, gntR family Avi_5373 PF07729 FCD domain Avi_5374 PF00072 Response regulator receiver domain Avi_5374 PF00196 Bacterial regulatory proteins, luxR family Avi_5375 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5377 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5377 PF00005 ABC transporter Avi_5381 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5382 PF00990 Diguanylate cyclase, GGDEF domain Avi_5382 PF00072 Response regulator receiver domain Avi_5383 PF13426 PAS domain Avi_5383 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_5383 PF13188 PAS domain Avi_5383 PF00989 PAS fold Avi_5383 PF00512 His Kinase A (phospho-acceptor) domain Avi_5384 PF00196 Bacterial regulatory proteins, luxR family Avi_5384 PF00072 Response regulator receiver domain Avi_5386 PF07730 Histidine kinase Avi_5386 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_5386 PF05384 Sensor protein DegS Avi_5388 PF07690 Major Facilitator Superfamily Avi_5390 PF12857 TOBE-like domain Avi_5390 PF00005 ABC transporter Avi_5391 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5392 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5394 PF00356 Bacterial regulatory proteins, lacI family Avi_5395 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_5395 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Avi_5398 PF01547 Bacterial extracellular solute-binding protein Avi_5399 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5400 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5401 PF08402 TOBE domain Avi_5401 PF00005 ABC transporter Avi_5404 PF00005 ABC transporter Avi_5406 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5409 PF03466 LysR substrate binding domain Avi_5409 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5410 PF07969 Amidohydrolase family Avi_5411 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Avi_5411 PF16353 Domain of unknown function(DUF4981) Avi_5411 PF00703 Glycosyl hydrolases family 2 Avi_5411 PF02929 Beta galactosidase small chain Avi_5411 PF02837 Glycosyl hydrolases family 2, sugar binding domain Avi_5412 PF01325 Iron dependent repressor, N-terminal DNA binding domain Avi_5412 PF00480 ROK family Avi_5413 PF01226 Formate/nitrite transporter Avi_5414 PF01979 Amidohydrolase family Avi_5422 PF00111 2Fe-2S iron-sulfur cluster binding domain Avi_5422 PF00355 Rieske [2Fe-2S] domain Avi_5424 PF01979 Amidohydrolase family Avi_5424 PF13382 Adenine deaminase C-terminal domain Avi_5425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5425 PF03466 LysR substrate binding domain Avi_5431 PF01979 Amidohydrolase family Avi_5433 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Avi_5433 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Avi_5434 PF01799 [2Fe-2S] binding domain Avi_5434 PF00111 2Fe-2S iron-sulfur cluster binding domain Avi_5435 PF00171 Aldehyde dehydrogenase family Avi_5436 PF01144 Coenzyme A transferase Avi_5437 PF01144 Coenzyme A transferase Avi_5438 PF07729 FCD domain Avi_5438 PF00392 Bacterial regulatory proteins, gntR family Avi_5439 PF01070 FMN-dependent dehydrogenase Avi_5441 PF01557 Fumarylacetoacetate (FAA) hydrolase family Avi_5443 PF01494 FAD binding domain Avi_5444 PF13458 Periplasmic binding protein Avi_5447 PF00005 ABC transporter Avi_5447 PF12399 Branched-chain amino acid ATP-binding cassette transporter Avi_5448 PF00005 ABC transporter Avi_5449 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_5453 PF01220 Dehydroquinase class II Avi_5454 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Avi_5454 PF08501 Shikimate dehydrogenase substrate binding domain Avi_5456 PF00005 ABC transporter Avi_5457 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_5458 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5459 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5461 PF00128 Alpha amylase, catalytic domain Avi_5461 PF11941 Domain of unknown function (DUF3459) Avi_5461 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Avi_5462 PF00128 Alpha amylase, catalytic domain Avi_5463 PF02566 OsmC-like protein Avi_5467 PF00005 ABC transporter Avi_5468 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5469 PF09084 NMT1/THI5 like Avi_5471 PF09084 NMT1/THI5 like Avi_5472 PF00296 Luciferase-like monooxygenase Avi_5475 PF02082 Transcriptional regulator Avi_5481 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5481 PF03466 LysR substrate binding domain Avi_5483 PF13533 Biotin-lipoyl like Avi_5484 PF00873 AcrB/AcrD/AcrF family Avi_5485 PF03466 LysR substrate binding domain Avi_5485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5490 PF01494 FAD binding domain Avi_5494 PF01370 NAD dependent epimerase/dehydratase family Avi_5496 PF00005 ABC transporter Avi_5501 PF00989 PAS fold Avi_5501 PF13493 Domain of unknown function (DUF4118) Avi_5501 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_5501 PF08447 PAS fold Avi_5501 PF00512 His Kinase A (phospho-acceptor) domain Avi_5501 PF13426 PAS domain Avi_5502 PF00072 Response regulator receiver domain Avi_5502 PF00196 Bacterial regulatory proteins, luxR family Avi_5504 PF00005 ABC transporter Avi_5504 PF17912 MalK OB fold domain Avi_5505 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5506 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5507 PF13416 Bacterial extracellular solute-binding protein Avi_5508 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5511 PF00005 ABC transporter Avi_5511 PF08402 TOBE domain Avi_5514 PF00480 ROK family Avi_5515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5516 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5517 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_5517 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5518 PF00005 ABC transporter Avi_5518 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5520 PF00005 ABC transporter Avi_5521 PF00072 Response regulator receiver domain Avi_5521 PF00486 Transcriptional regulatory protein, C terminal Avi_5524 PF00202 Aminotransferase class-III Avi_5526 PF00892 EamA-like transporter family Avi_5531 PF00892 EamA-like transporter family Avi_5535 PF07238 PilZ domain Avi_5535 PF03552 Cellulose synthase Avi_5535 PF00535 Glycosyl transferase family 2 Avi_5539 PF08447 PAS fold Avi_5539 PF13426 PAS domain Avi_5539 PF07536 HWE histidine kinase Avi_5540 PF07536 HWE histidine kinase Avi_5540 PF13426 PAS domain Avi_5541 PF00072 Response regulator receiver domain Avi_5544 PF03193 RsgA GTPase Avi_5545 PF00072 Response regulator receiver domain Avi_5545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_5545 PF13426 PAS domain Avi_5547 PF16363 GDP-mannose 4,6 dehydratase Avi_5548 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Avi_5548 PF01266 FAD dependent oxidoreductase Avi_5549 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Avi_5549 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_5550 PF00005 ABC transporter Avi_5552 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_5553 PF00356 Bacterial regulatory proteins, lacI family Avi_5554 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_5554 PF00672 HAMP domain Avi_5555 PF01584 CheW-like domain Avi_5556 PF13533 Biotin-lipoyl like Avi_5557 PF00873 AcrB/AcrD/AcrF family Avi_5558 PF00873 AcrB/AcrD/AcrF family Avi_5559 PF00392 Bacterial regulatory proteins, gntR family Avi_5559 PF07729 FCD domain Avi_5560 PF01571 Aminomethyltransferase folate-binding domain Avi_5561 PF00403 Heavy-metal-associated domain Avi_5562 PF13411 MerR HTH family regulatory protein Avi_5563 PF00128 Alpha amylase, catalytic domain Avi_5563 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Avi_5563 PF02806 Alpha amylase, C-terminal all-beta domain Avi_5564 PF16657 Maltogenic Amylase, C-terminal domain Avi_5564 PF00128 Alpha amylase, catalytic domain Avi_5565 PF00128 Alpha amylase, catalytic domain Avi_5565 PF11896 Domain of unknown function (DUF3416) Avi_5566 PF02446 4-alpha-glucanotransferase Avi_5567 PF00313 'Cold-shock' DNA-binding domain Avi_5568 PF01207 Dihydrouridine synthase (Dus) Avi_5570 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_5570 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Avi_5575 PF00392 Bacterial regulatory proteins, gntR family Avi_5575 PF07729 FCD domain Avi_5576 PF00701 Dihydrodipicolinate synthetase family Avi_5579 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Avi_5579 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_5581 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5582 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5584 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_5584 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Avi_5585 PF00005 ABC transporter Avi_5585 PF17912 MalK OB fold domain Avi_5586 PF17284 Spermidine synthase tetramerisation domain Avi_5589 PF07536 HWE histidine kinase Avi_5589 PF13426 PAS domain Avi_5589 PF08447 PAS fold Avi_5592 PF06745 KaiC Avi_5593 PF13581 Histidine kinase-like ATPase domain Avi_5593 PF13426 PAS domain Avi_5593 PF07536 HWE histidine kinase Avi_5596 PF05974 Domain of unknown function (DUF892) Avi_5597 PF08281 Sigma-70, region 4 Avi_5597 PF04542 Sigma-70 region 2 Avi_5602 PF08448 PAS fold Avi_5602 PF00990 Diguanylate cyclase, GGDEF domain Avi_5602 PF08447 PAS fold Avi_5602 PF00563 EAL domain Avi_5604 PF00211 Adenylate and Guanylate cyclase catalytic domain Avi_5606 PF00005 ABC transporter Avi_5606 PF00664 ABC transporter transmembrane region Avi_5607 PF00027 Cyclic nucleotide-binding domain Avi_5607 PF13302 Acetyltransferase (GNAT) domain Avi_5608 PF00459 Inositol monophosphatase family Avi_5610 PF08402 TOBE domain Avi_5610 PF00005 ABC transporter Avi_5611 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5616 PF03786 D-mannonate dehydratase (UxuA) Avi_5624 PF00550 Phosphopantetheine attachment site Avi_5624 PF14765 Polyketide synthase dehydratase Avi_5624 PF08659 KR domain Avi_5624 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_5624 PF16197 Ketoacyl-synthetase C-terminal extension Avi_5624 PF08240 Alcohol dehydrogenase GroES-like domain Avi_5624 PF00698 Acyl transferase domain Avi_5624 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_5625 PF08659 KR domain Avi_5625 PF00698 Acyl transferase domain Avi_5625 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_5625 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_5625 PF16197 Ketoacyl-synthetase C-terminal extension Avi_5625 PF14765 Polyketide synthase dehydratase Avi_5625 PF00550 Phosphopantetheine attachment site Avi_5626 PF00698 Acyl transferase domain Avi_5628 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_5628 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_5628 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Avi_5630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5630 PF00005 ABC transporter Avi_5631 PF00005 ABC transporter Avi_5631 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5632 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5633 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_5633 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5634 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5637 PF00561 alpha/beta hydrolase fold Avi_5640 PF03466 LysR substrate binding domain Avi_5640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5641 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5642 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5643 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_5643 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5644 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5644 PF00005 ABC transporter Avi_5646 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5646 PF00005 ABC transporter Avi_5648 PF01425 Amidase Avi_5649 PF01425 Amidase Avi_5651 PF00857 Isochorismatase family Avi_5652 PF00005 ABC transporter Avi_5653 PF09663 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) Avi_5654 PF00857 Isochorismatase family Avi_5655 PF00795 Carbon-nitrogen hydrolase Avi_5659 PF02608 ABC transporter substrate-binding protein PnrA-like Avi_5660 PF07729 FCD domain Avi_5660 PF00392 Bacterial regulatory proteins, gntR family Avi_5661 PF00005 ABC transporter Avi_5661 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5662 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_5662 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5663 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5666 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5668 PF00202 Aminotransferase class-III Avi_5671 PF01266 FAD dependent oxidoreductase Avi_5673 PF00171 Aldehyde dehydrogenase family Avi_5675 PF01546 Peptidase family M20/M25/M40 Avi_5675 PF07687 Peptidase dimerisation domain Avi_5677 PF08361 MAATS-type transcriptional repressor, C-terminal region Avi_5677 PF00440 Bacterial regulatory proteins, tetR family Avi_5678 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Avi_5679 PF00873 AcrB/AcrD/AcrF family Avi_5680 PF01039 Carboxyl transferase domain Avi_5683 PF02785 Biotin carboxylase C-terminal domain Avi_5683 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_5683 PF00364 Biotin-requiring enzyme Avi_5683 PF00289 Biotin carboxylase, N-terminal domain Avi_5688 PF01047 MarR family Avi_5690 PF13533 Biotin-lipoyl like Avi_5691 PF01557 Fumarylacetoacetate (FAA) hydrolase family Avi_5693 PF00975 Thioesterase domain Avi_5693 PF00550 Phosphopantetheine attachment site Avi_5693 PF00668 Condensation domain Avi_5693 PF13193 AMP-binding enzyme C-terminal domain Avi_5693 PF00501 AMP-binding enzyme Avi_5694 PF01370 NAD dependent epimerase/dehydratase family Avi_5697 PF00005 ABC transporter Avi_5697 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5698 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_5698 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5699 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5701 PF00701 Dihydrodipicolinate synthetase family Avi_5703 PF00392 Bacterial regulatory proteins, gntR family Avi_5703 PF07729 FCD domain Avi_5704 PF01546 Peptidase family M20/M25/M40 Avi_5704 PF07687 Peptidase dimerisation domain Avi_5707 PF06964 Alpha-L-arabinofuranosidase C-terminal domain Avi_5708 PF03459 TOBE domain Avi_5708 PF17912 MalK OB fold domain Avi_5708 PF00005 ABC transporter Avi_5709 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5710 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5711 PF01547 Bacterial extracellular solute-binding protein Avi_5713 PF00885 6,7-dimethyl-8-ribityllumazine synthase Avi_5716 PF03466 LysR substrate binding domain Avi_5716 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5718 PF01266 FAD dependent oxidoreductase Avi_5719 PF00171 Aldehyde dehydrogenase family Avi_5720 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Avi_5720 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Avi_5723 PF08450 SMP-30/Gluconolactonase/LRE-like region Avi_5724 PF03033 Glycosyltransferase family 28 N-terminal domain Avi_5725 PF03472 Autoinducer binding domain Avi_5725 PF00196 Bacterial regulatory proteins, luxR family Avi_5726 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Avi_5726 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Avi_5727 PF01053 Cys/Met metabolism PLP-dependent enzyme Avi_5728 PF01554 MatE Avi_5730 PF00975 Thioesterase domain Avi_5730 PF13193 AMP-binding enzyme C-terminal domain Avi_5730 PF00668 Condensation domain Avi_5730 PF00501 AMP-binding enzyme Avi_5730 PF00550 Phosphopantetheine attachment site Avi_5731 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) Avi_5738 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5739 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5740 PF16874 Glycosyl hydrolase family 36 C-terminal domain Avi_5740 PF16875 Glycosyl hydrolase family 36 N-terminal domain Avi_5741 PF00005 ABC transporter Avi_5741 PF17912 MalK OB fold domain Avi_5742 PF08533 Beta-galactosidase C-terminal domain Avi_5742 PF02449 Beta-galactosidase Avi_5742 PF08532 Beta-galactosidase trimerisation domain Avi_5744 PF17806 Sarcosine oxidase A3 domain Avi_5744 PF01571 Aminomethyltransferase folate-binding domain Avi_5744 PF08669 Glycine cleavage T-protein C-terminal barrel domain Avi_5744 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_5745 PF04267 Sarcosine oxidase, delta subunit family Avi_5746 PF01266 FAD dependent oxidoreductase Avi_5747 PF01965 DJ-1/PfpI family Avi_5747 PF12833 Helix-turn-helix domain Avi_5750 PF01493 GXGXG motif Avi_5751 PF01645 Conserved region in glutamate synthase Avi_5752 PF00120 Glutamine synthetase, catalytic domain Avi_5753 PF07690 Major Facilitator Superfamily Avi_5754 PF01070 FMN-dependent dehydrogenase Avi_5755 PF01547 Bacterial extracellular solute-binding protein Avi_5758 PF07470 Glycosyl Hydrolase Family 88 Avi_5760 PF17912 MalK OB fold domain Avi_5760 PF00005 ABC transporter Avi_5762 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5763 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5764 PF00356 Bacterial regulatory proteins, lacI family Avi_5768 PF08240 Alcohol dehydrogenase GroES-like domain Avi_5768 PF00107 Zinc-binding dehydrogenase Avi_5769 PF01738 Dienelactone hydrolase family Avi_5770 PF00571 CBS domain Avi_5770 PF00478 IMP dehydrogenase / GMP reductase domain Avi_5771 PF03466 LysR substrate binding domain Avi_5771 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5774 PF03466 LysR substrate binding domain Avi_5774 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5780 PF04452 RNA methyltransferase Avi_5782 PF01384 Phosphate transporter family Avi_5786 PF02913 FAD linked oxidases, C-terminal domain Avi_5786 PF01565 FAD binding domain Avi_5788 PF01565 FAD binding domain Avi_5789 PF02754 Cysteine-rich domain Avi_5789 PF13183 4Fe-4S dicluster domain Avi_5791 PF00043 Glutathione S-transferase, C-terminal domain Avi_5791 PF02798 Glutathione S-transferase, N-terminal domain Avi_5794 PF01634 ATP phosphoribosyltransferase Avi_5795 PF13393 Histidyl-tRNA synthetase Avi_5801 PF03129 Anticodon binding domain Avi_5801 PF13393 Histidyl-tRNA synthetase Avi_5808 PF03352 Methyladenine glycosylase Avi_5810 PF01476 LysM domain Avi_5810 PF17969 L,D-transpeptidase C-terminal domain Avi_5810 PF03734 L,D-transpeptidase catalytic domain Avi_5811 PF03734 L,D-transpeptidase catalytic domain Avi_5811 PF01476 LysM domain Avi_5811 PF17969 L,D-transpeptidase C-terminal domain Avi_5812 PF17874 MalT-like TPR region Avi_5812 PF00196 Bacterial regulatory proteins, luxR family Avi_5813 PF01648 4'-phosphopantetheinyl transferase superfamily Avi_5813 PF17837 4'-phosphopantetheinyl transferase N-terminal domain Avi_5814 PF02631 RecX family Avi_5815 PF16884 N-terminal domain of oxidoreductase Avi_5815 PF00107 Zinc-binding dehydrogenase Avi_5819 PF00133 tRNA synthetases class I (I, L, M and V) Avi_5819 PF08264 Anticodon-binding domain of tRNA Avi_5820 PF00474 Sodium:solute symporter family Avi_5823 PF00701 Dihydrodipicolinate synthetase family Avi_5826 PF01687 Riboflavin kinase Avi_5826 PF06574 FAD synthetase Avi_5828 PF02417 Chromate transporter Avi_5829 PF00166 Chaperonin 10 Kd subunit Avi_5830 PF00118 TCP-1/cpn60 chaperonin family Avi_5834 PF05378 Hydantoinase/oxoprolinase N-terminal region Avi_5834 PF01968 Hydantoinase/oxoprolinase Avi_5835 PF00005 ABC transporter Avi_5835 PF08402 TOBE domain Avi_5839 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5840 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5841 PF02219 Methylenetetrahydrofolate reductase Avi_5843 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Avi_5844 PF16653 Saccharopine dehydrogenase C-terminal domain Avi_5844 PF03435 Saccharopine dehydrogenase NADP binding domain Avi_5845 PF02785 Biotin carboxylase C-terminal domain Avi_5845 PF00364 Biotin-requiring enzyme Avi_5845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_5845 PF00289 Biotin carboxylase, N-terminal domain Avi_5847 PF02682 Carboxyltransferase domain, subdomain C and D Avi_5849 PF07286 Protein of unknown function (DUF1445) Avi_5851 PF03746 LamB/YcsF family Avi_5852 PF01566 Natural resistance-associated macrophage protein Avi_5853 PF00392 Bacterial regulatory proteins, gntR family Avi_5853 PF07729 FCD domain Avi_5854 PF01037 Lrp/AsnC ligand binding domain Avi_5856 PF00291 Pyridoxal-phosphate dependent enzyme Avi_5861 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Avi_5862 PF00171 Aldehyde dehydrogenase family Avi_5863 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5863 PF03466 LysR substrate binding domain Avi_5865 PF03746 LamB/YcsF family Avi_5866 PF00364 Biotin-requiring enzyme Avi_5868 PF00289 Biotin carboxylase, N-terminal domain Avi_5868 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_5868 PF02785 Biotin carboxylase C-terminal domain Avi_5870 PF02626 Carboxyltransferase domain, subdomain A and B Avi_5873 PF00005 ABC transporter Avi_5873 PF08402 TOBE domain Avi_5874 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5881 PF08402 TOBE domain Avi_5881 PF00005 ABC transporter Avi_5882 PF01522 Polysaccharide deacetylase Avi_5884 PF02492 CobW/HypB/UreG, nucleotide-binding domain Avi_5884 PF07683 Cobalamin synthesis protein cobW C-terminal domain Avi_5886 PF01425 Amidase Avi_5887 PF01037 Lrp/AsnC ligand binding domain Avi_5888 PF01266 FAD dependent oxidoreductase Avi_5890 PF01740 STAS domain Avi_5890 PF00916 Sulfate permease family Avi_5891 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Avi_5891 PF10414 Sirohaem synthase dimerisation region Avi_5891 PF14824 Sirohaem biosynthesis protein central Avi_5892 PF01568 Molydopterin dinucleotide binding domain Avi_5892 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Avi_5892 PF00384 Molybdopterin oxidoreductase Avi_5892 PF04324 BFD-like [2Fe-2S] binding domain Avi_5894 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_5894 PF18267 Rubredoxin NAD+ reductase C-terminal domain Avi_5894 PF04324 BFD-like [2Fe-2S] binding domain Avi_5894 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Avi_5894 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Avi_5895 PF00005 ABC transporter Avi_5896 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5900 PF08376 Nitrate and nitrite sensing Avi_5900 PF03861 ANTAR domain Avi_5907 PF03466 LysR substrate binding domain Avi_5907 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5908 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_5908 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Avi_5908 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_5909 PF02515 CoA-transferase family III Avi_5913 PF03576 Peptidase family S58 Avi_5914 PF01063 Amino-transferase class IV Avi_5915 PF00144 Beta-lactamase Avi_5916 PF01244 Membrane dipeptidase (Peptidase family M19) Avi_5917 PF01964 Radical SAM ThiC family Avi_5917 PF13667 ThiC-associated domain Avi_5918 PF01266 FAD dependent oxidoreductase Avi_5920 PF05690 Thiazole biosynthesis protein ThiG Avi_5922 PF02581 Thiamine monophosphate synthase Avi_5923 PF02887 Pyruvate kinase, alpha/beta domain Avi_5923 PF00224 Pyruvate kinase, barrel domain Avi_5924 PF13807 G-rich domain on putative tyrosine kinase Avi_5924 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Avi_5924 PF02706 Chain length determinant protein Avi_5925 PF00535 Glycosyl transferase family 2 Avi_5926 PF00535 Glycosyl transferase family 2 Avi_5927 PF00535 Glycosyl transferase family 2 Avi_5929 PF00722 Glycosyl hydrolases family 16 Avi_5930 PF01757 Acyltransferase family Avi_5931 PF01943 Polysaccharide biosynthesis protein Avi_5932 PF00535 Glycosyl transferase family 2 Avi_5933 PF04230 Polysaccharide pyruvyl transferase Avi_5934 PF00535 Glycosyl transferase family 2 Avi_5935 PF11089 Exopolysaccharide production repressor Avi_5936 PF02397 Bacterial sugar transferase Avi_5937 PF02563 Polysaccharide biosynthesis/export protein Avi_5943 PF01738 Dienelactone hydrolase family Avi_5945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_5946 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5946 PF03466 LysR substrate binding domain Avi_5948 PF02563 Polysaccharide biosynthesis/export protein Avi_5950 PF03055 Retinal pigment epithelial membrane protein Avi_5952 PF04632 Fusaric acid resistance protein family Avi_5953 PF00171 Aldehyde dehydrogenase family Avi_5955 PF05962 HutD Avi_5956 PF17392 Urocanase C-terminal domain Avi_5956 PF01175 Urocanase Rossmann-like domain Avi_5956 PF17391 Urocanase N-terminal domain Avi_5958 PF00221 Aromatic amino acid lyase Avi_5959 PF01979 Amidohydrolase family Avi_5960 PF01979 Amidohydrolase family Avi_5962 PF00296 Luciferase-like monooxygenase Avi_5964 PF00005 ABC transporter Avi_5965 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5966 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5967 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_5968 PF00485 Phosphoribulokinase / Uridine kinase family Avi_5969 PF00005 ABC transporter Avi_5970 PF02653 Branched-chain amino acid transport system / permease component Avi_5971 PF13407 Periplasmic binding protein domain Avi_5972 PF00480 ROK family Avi_5977 PF00491 Arginase family Avi_5979 PF02423 Ornithine cyclodeaminase/mu-crystallin family Avi_5980 PF01679 Proteolipid membrane potential modulator Avi_5981 PF07470 Glycosyl Hydrolase Family 88 Avi_5983 PF02472 Biopolymer transport protein ExbD/TolR Avi_5985 PF01618 MotA/TolQ/ExbB proton channel family Avi_5989 PF00027 Cyclic nucleotide-binding domain Avi_5989 PF13545 Crp-like helix-turn-helix domain Avi_5992 PF08281 Sigma-70, region 4 Avi_5992 PF04542 Sigma-70 region 2 Avi_5998 PF10005 zinc-ribbon domain Avi_5998 PF15887 Putative zinc-binding metallo-peptidase Avi_5999 PF07536 HWE histidine kinase Avi_5999 PF08447 PAS fold Avi_5999 PF13426 PAS domain Avi_6000 PF00072 Response regulator receiver domain Avi_6002 PF00210 Ferritin-like domain Avi_6007 PF04679 ATP dependent DNA ligase C terminal region Avi_6007 PF01068 ATP dependent DNA ligase domain Avi_6007 PF04675 DNA ligase N terminus Avi_6010 PF00202 Aminotransferase class-III Avi_6011 PF00551 Formyl transferase Avi_6012 PF00150 Cellulase (glycosyl hydrolase family 5) Avi_6015 PF13439 Glycosyltransferase Family 4 Avi_6015 PF00534 Glycosyl transferases group 1 Avi_6023 PF00550 Phosphopantetheine attachment site Avi_6024 PF12544 Lysine-2,3-aminomutase Avi_6024 PF04055 Radical SAM superfamily Avi_6025 PF00152 tRNA synthetases class II (D, K and N) Avi_6026 PF09285 Elongation factor P, C-terminal Avi_6026 PF08207 Elongation factor P (EF-P) KOW-like domain Avi_6026 PF01132 Elongation factor P (EF-P) OB domain Avi_6027 PF02321 Outer membrane efflux protein Avi_6028 PF00873 AcrB/AcrD/AcrF family Avi_6029 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Avi_6029 PF00529 HlyD membrane-fusion protein of T1SS Avi_6030 PF08361 MAATS-type transcriptional repressor, C-terminal region Avi_6030 PF00440 Bacterial regulatory proteins, tetR family Avi_6031 PF01259 SAICAR synthetase Avi_6038 PF02563 Polysaccharide biosynthesis/export protein Avi_6039 PF00069 Protein kinase domain Avi_6042 PF00691 OmpA family Avi_6042 PF13677 Membrane MotB of proton-channel complex MotA/MotB Avi_6053 PF00004 ATPase family associated with various cellular activities (AAA) Avi_6053 PF07724 AAA domain (Cdc48 subfamily) Avi_6053 PF17871 AAA lid domain Avi_6053 PF10431 C-terminal, D2-small domain, of ClpB protein Avi_6059 PF07549 SecD/SecF GG Motif Avi_6059 PF02355 Protein export membrane protein Avi_6061 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_6061 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_6062 PF00296 Luciferase-like monooxygenase Avi_6065 PF01758 Sodium Bile acid symporter family Avi_6066 PF03960 ArsC family Avi_6068 PF03358 NADPH-dependent FMN reductase Avi_6070 PF00486 Transcriptional regulatory protein, C terminal Avi_6070 PF00072 Response regulator receiver domain Avi_6071 PF13493 Domain of unknown function (DUF4118) Avi_6071 PF02702 Osmosensitive K+ channel His kinase sensor domain Avi_6071 PF00512 His Kinase A (phospho-acceptor) domain Avi_6071 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_6071 PF13492 GAF domain Avi_6072 PF02669 K+-transporting ATPase, c chain Avi_6074 PF03814 Potassium-transporting ATPase A subunit Avi_6077 PF09382 RQC domain Avi_6077 PF16124 RecQ zinc-binding Avi_6077 PF00570 HRDC domain Avi_6077 PF00271 Helicase conserved C-terminal domain Avi_6077 PF00270 DEAD/DEAH box helicase Avi_6078 PF01494 FAD binding domain Avi_6079 PF01266 FAD dependent oxidoreductase Avi_6080 PF00842 Alanine racemase, C-terminal domain Avi_6080 PF01168 Alanine racemase, N-terminal domain Avi_6081 PF01037 Lrp/AsnC ligand binding domain Avi_6082 PF00392 Bacterial regulatory proteins, gntR family Avi_6082 PF07729 FCD domain Avi_6084 PF12697 Alpha/beta hydrolase family Avi_6086 PF01613 Flavin reductase like domain Avi_6087 PF00296 Luciferase-like monooxygenase Avi_6088 PF00171 Aldehyde dehydrogenase family Avi_6090 PF00528 Binding-protein-dependent transport system inner membrane component Avi_6091 PF00528 Binding-protein-dependent transport system inner membrane component Avi_6092 PF08402 TOBE domain Avi_6092 PF00005 ABC transporter Avi_6093 PF00171 Aldehyde dehydrogenase family Avi_6095 PF05025 RbsD / FucU transport protein family Avi_6096 PF00248 Aldo/keto reductase family Avi_6097 PF02653 Branched-chain amino acid transport system / permease component Avi_6098 PF02653 Branched-chain amino acid transport system / permease component Avi_6099 PF00005 ABC transporter Avi_6100 PF13407 Periplasmic binding protein domain Avi_6101 PF00465 Iron-containing alcohol dehydrogenase Avi_6102 PF00392 Bacterial regulatory proteins, gntR family Avi_6102 PF07729 FCD domain Avi_6103 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Avi_6103 PF08666 SAF domain Avi_6106 PF00465 Iron-containing alcohol dehydrogenase Avi_6107 PF00672 HAMP domain Avi_6107 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_6107 PF00512 His Kinase A (phospho-acceptor) domain Avi_6108 PF00486 Transcriptional regulatory protein, C terminal Avi_6108 PF00072 Response regulator receiver domain Avi_6110 PF03401 Tripartite tricarboxylate transporter family receptor Avi_6112 PF01970 Tripartite tricarboxylate transporter TctA family Avi_6117 PF00108 Thiolase, N-terminal domain Avi_6117 PF02803 Thiolase, C-terminal domain Avi_6118 PF01144 Coenzyme A transferase Avi_6120 PF01144 Coenzyme A transferase Avi_6121 PF01614 Bacterial transcriptional regulator Avi_6121 PF09339 IclR helix-turn-helix domain Avi_6123 PF01494 FAD binding domain Avi_6124 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_6124 PF03466 LysR substrate binding domain Avi_6126 PF00561 alpha/beta hydrolase fold Avi_6127 PF02627 Carboxymuconolactone decarboxylase family Avi_6128 PF00775 Dioxygenase Avi_6128 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal Avi_6129 PF00775 Dioxygenase Avi_6130 PF10397 Adenylosuccinate lyase C-terminus Avi_6130 PF00206 Lyase Avi_6131 PF00107 Zinc-binding dehydrogenase Avi_6133 PF09397 Ftsk gamma domain Avi_6133 PF17854 FtsK alpha domain Avi_6133 PF01580 FtsK/SpoIIIE family Avi_6133 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Avi_6134 PF00005 ABC transporter Avi_6135 PF00528 Binding-protein-dependent transport system inner membrane component Avi_6137 PF00924 Mechanosensitive ion channel Avi_6139 PF07886 BA14K-like protein Avi_6143 PF00005 ABC transporter Avi_6143 PF00664 ABC transporter transmembrane region Avi_6144 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_6144 PF00512 His Kinase A (phospho-acceptor) domain Avi_6144 PF00672 HAMP domain Avi_6144 PF16527 Two-component sensor protein CpxA, periplasmic domain Avi_6145 PF00072 Response regulator receiver domain Avi_6145 PF00486 Transcriptional regulatory protein, C terminal Avi_6154 PF02768 DNA polymerase III beta subunit, C-terminal domain Avi_6154 PF00712 DNA polymerase III beta subunit, N-terminal domain Avi_6154 PF02767 DNA polymerase III beta subunit, central domain Avi_6173 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Avi_6173 PF17854 FtsK alpha domain Avi_6173 PF09397 Ftsk gamma domain Avi_6173 PF01580 FtsK/SpoIIIE family Avi_6177 PF00145 C-5 cytosine-specific DNA methylase Avi_6185 PF00574 Clp protease Avi_6212 PF02104 SURF1 family Avi_6213 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Avi_6214 PF00510 Cytochrome c oxidase subunit III Avi_6215 PF00115 Cytochrome C and Quinol oxidase polypeptide I Avi_6217 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Avi_6217 PF06481 COX Aromatic Rich Motif Avi_6218 PF04542 Sigma-70 region 2 Avi_6218 PF08281 Sigma-70, region 4 Avi_6220 PF01027 Inhibitor of apoptosis-promoting Bax1 Avi_6221 PF00127 Copper binding proteins, plastocyanin/azurin family Avi_6224 PF00722 Glycosyl hydrolases family 16 Avi_6224 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) Avi_6225 PF00375 Sodium:dicarboxylate symporter family Avi_6227 PF02743 Cache domain Avi_6227 PF00512 His Kinase A (phospho-acceptor) domain Avi_6227 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_6228 PF00158 Sigma-54 interaction domain Avi_6228 PF00072 Response regulator receiver domain Avi_6228 PF02954 Bacterial regulatory protein, Fis family Avi_6229 PF17938 Tetracyclin repressor-like, C-terminal domain Avi_6229 PF00440 Bacterial regulatory proteins, tetR family Avi_6233 PF00480 ROK family Avi_6234 PF01979 Amidohydrolase family Avi_6235 PF01380 SIS domain Avi_6238 PF00528 Binding-protein-dependent transport system inner membrane component Avi_6239 PF00528 Binding-protein-dependent transport system inner membrane component Avi_6240 PF01547 Bacterial extracellular solute-binding protein Avi_6242 PF00005 ABC transporter Avi_6242 PF17912 MalK OB fold domain Avi_6243 PF01168 Alanine racemase, N-terminal domain Avi_6243 PF14031 Putative serine dehydratase domain Avi_6244 PF07364 Metallopeptidase family M81 Avi_6244 PF07171 MlrC C-terminus Avi_6249 PF02685 Glucokinase Avi_6249 PF01418 Helix-turn-helix domain, rpiR family Avi_6249 PF01380 SIS domain Avi_6251 PF00728 Glycosyl hydrolase family 20, catalytic domain Avi_6251 PF02838 Glycosyl hydrolase family 20, domain 2 Avi_6253 PF07690 Major Facilitator Superfamily Avi_6254 PF03932 CutC family Avi_6255 PF03061 Thioesterase superfamily Avi_6256 PF00440 Bacterial regulatory proteins, tetR family Avi_6257 PF01915 Glycosyl hydrolase family 3 C-terminal domain Avi_6257 PF14310 Fibronectin type III-like domain Avi_6257 PF00933 Glycosyl hydrolase family 3 N terminal domain Avi_6257 PF07691 PA14 domain Avi_6258 PF00512 His Kinase A (phospho-acceptor) domain Avi_6258 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_6258 PF08521 Two-component sensor kinase N-terminal Avi_6259 PF00486 Transcriptional regulatory protein, C terminal Avi_6259 PF00072 Response regulator receiver domain Avi_6263 PF01261 Xylose isomerase-like TIM barrel Avi_6264 PF00596 Class II Aldolase and Adducin N-terminal domain Avi_6265 PF00455 DeoR C terminal sensor domain Avi_6265 PF08220 DeoR-like helix-turn-helix domain Avi_6266 PF13407 Periplasmic binding protein domain Avi_6267 PF00005 ABC transporter Avi_6268 PF02653 Branched-chain amino acid transport system / permease component Avi_6269 PF02653 Branched-chain amino acid transport system / permease component Avi_6270 PF05336 L-rhamnose mutarotase Avi_6272 PF01557 Fumarylacetoacetate (FAA) hydrolase family Avi_6273 PF00563 EAL domain Avi_6273 PF00990 Diguanylate cyclase, GGDEF domain Avi_6273 PF03707 Bacterial signalling protein N terminal repeat Avi_6274 PF01177 Asp/Glu/Hydantoin racemase Avi_6277 PF00528 Binding-protein-dependent transport system inner membrane component Avi_6279 PF00005 ABC transporter Avi_6279 PF08402 TOBE domain Avi_6283 PF02245 Methylpurine-DNA glycosylase (MPG) Avi_6284 PF00005 ABC transporter Avi_6287 PF06751 Ethanolamine ammonia lyase large subunit (EutB) Avi_6288 PF05985 Ethanolamine ammonia-lyase light chain (EutC) Avi_7000 PF13614 AAA domain Avi_7001 PF07506 RepB plasmid partitioning protein Avi_7001 PF02195 ParB-like nuclease domain Avi_7002 PF11800 Replication protein C C-terminal region Avi_7002 PF03428 Replication protein C N-terminal domain Avi_7005 PF00072 Response regulator receiver domain Avi_7005 PF00990 Diguanylate cyclase, GGDEF domain Avi_7008 PF00589 Phage integrase family Avi_7014 PF02615 Malate/L-lactate dehydrogenase Avi_7015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7016 PF01968 Hydantoinase/oxoprolinase Avi_7016 PF05378 Hydantoinase/oxoprolinase N-terminal region Avi_7017 PF02538 Hydantoinase B/oxoprolinase Avi_7020 PF00005 ABC transporter Avi_7020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7021 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7021 PF00005 ABC transporter Avi_7022 PF05544 Proline racemase Avi_7026 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7026 PF00005 ABC transporter Avi_7027 PF00005 ABC transporter Avi_7027 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7028 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7028 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_7029 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7035 PF17762 HTH domain found in ParB protein Avi_7035 PF02195 ParB-like nuclease domain Avi_7039 PF00106 short chain dehydrogenase Avi_7042 PF00216 Bacterial DNA-binding protein Avi_7044 PF05717 IS66 Orf2 like protein Avi_7045 PF13005 zinc-finger binding domain of transposase IS66 Avi_7045 PF13007 Transposase C of IS166 homeodomain Avi_7045 PF13817 IS66 C-terminal element Avi_7045 PF03050 Transposase IS66 family Avi_7047 PF05406 WGR domain Avi_7056 PF04717 Type VI secretion system, phage-baseplate injector Avi_7061 PF02534 Type IV secretory system Conjugative DNA transfer Avi_7062 PF06412 Conjugal transfer protein TraD Avi_7063 PF07820 TraC-like protein Avi_7064 PF17841 BID domain of Bartonella effector protein (Bep) Avi_7064 PF01443 Viral (Superfamily 1) RNA helicase Avi_7064 PF03389 MobA/MobL family Avi_7065 PF10502 Signal peptidase, peptidase S26 Avi_7066 PF00795 Carbon-nitrogen hydrolase Avi_7067 PF06871 TraH_2 Avi_7073 PF01381 Helix-turn-helix Avi_7076 PF00107 Zinc-binding dehydrogenase Avi_7076 PF08240 Alcohol dehydrogenase GroES-like domain Avi_7077 PF03737 Aldolase/RraA Avi_7079 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Avi_7079 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Avi_7081 PF03401 Tripartite tricarboxylate transporter family receptor Avi_7083 PF01970 Tripartite tricarboxylate transporter TctA family Avi_7084 PF01070 FMN-dependent dehydrogenase Avi_7085 PF13610 DDE domain Avi_7088 PF00005 ABC transporter Avi_7089 PF00005 ABC transporter Avi_7090 PF02653 Branched-chain amino acid transport system / permease component Avi_7091 PF02653 Branched-chain amino acid transport system / permease component Avi_7091 PF11862 Domain of unknown function (DUF3382) Avi_7092 PF01425 Amidase Avi_7093 PF13340 Putative transposase of IS4/5 family (DUF4096) Avi_7098 PF01810 LysE type translocator Avi_7103 PF13737 Transposase DDE domain Avi_7106 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Avi_7106 PF00391 PEP-utilising enzyme, mobile domain Avi_7108 PF00391 PEP-utilising enzyme, mobile domain Avi_7108 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Avi_7109 PF07722 Peptidase C26 Avi_7110 PF00483 Nucleotidyl transferase Avi_7114 PF13610 DDE domain Avi_7117 PF13737 Transposase DDE domain Avi_7121 PF03466 LysR substrate binding domain Avi_7121 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_7122 PF05977 Transmembrane secretion effector Avi_7125 PF00857 Isochorismatase family Avi_7126 PF00296 Luciferase-like monooxygenase Avi_7127 PF01425 Amidase Avi_7128 PF01613 Flavin reductase like domain Avi_7130 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7131 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7132 PF00005 ABC transporter Avi_7132 PF08402 TOBE domain Avi_7136 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Avi_7149 PF00067 Cytochrome P450 Avi_7150 PF13649 Methyltransferase domain Avi_7152 PF00685 Sulfotransferase domain Avi_7154 PF13610 DDE domain Avi_7155 PF00296 Luciferase-like monooxygenase Avi_7156 PF00005 ABC transporter Avi_7156 PF12399 Branched-chain amino acid ATP-binding cassette transporter Avi_7157 PF02653 Branched-chain amino acid transport system / permease component Avi_7161 PF00005 ABC transporter Avi_7162 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_7162 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_7163 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Avi_7165 PF00005 ABC transporter Avi_7166 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7167 PF00296 Luciferase-like monooxygenase Avi_7172 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7172 PF00005 ABC transporter Avi_7173 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7173 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_7174 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7179 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Avi_7179 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_7179 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_7181 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7182 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7183 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7185 PF00005 ABC transporter Avi_7185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7187 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7187 PF00005 ABC transporter Avi_7188 PF00248 Aldo/keto reductase family Avi_7190 PF00881 Nitroreductase family Avi_7191 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7191 PF00005 ABC transporter Avi_7192 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_7192 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7193 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7194 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7195 PF00296 Luciferase-like monooxygenase Avi_7196 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7197 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7198 PF09084 NMT1/THI5 like Avi_7199 PF00005 ABC transporter Avi_7200 PF00296 Luciferase-like monooxygenase Avi_7201 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7201 PF00005 ABC transporter Avi_7203 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7206 PF00296 Luciferase-like monooxygenase Avi_7212 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7214 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7215 PF07687 Peptidase dimerisation domain Avi_7215 PF01546 Peptidase family M20/M25/M40 Avi_7216 PF00296 Luciferase-like monooxygenase Avi_7221 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7222 PF00005 ABC transporter Avi_7224 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_7225 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7227 PF00005 ABC transporter Avi_7228 PF03180 NLPA lipoprotein Avi_7230 PF00005 ABC transporter Avi_7230 PF09383 NIL domain Avi_7231 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7233 PF03180 NLPA lipoprotein Avi_7234 PF09383 NIL domain Avi_7234 PF00005 ABC transporter Avi_7235 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7238 PF07729 FCD domain Avi_7238 PF00392 Bacterial regulatory proteins, gntR family Avi_7239 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_7240 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7241 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7245 PF02230 Phospholipase/Carboxylesterase Avi_7250 PF12833 Helix-turn-helix domain Avi_7250 PF02805 Metal binding domain of Ada Avi_7250 PF00730 HhH-GPD superfamily base excision DNA repair protein Avi_7250 PF06029 AlkA N-terminal domain Avi_7251 PF05544 Proline racemase Avi_7252 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7253 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7254 PF00571 CBS domain Avi_7254 PF00005 ABC transporter Avi_7256 PF01266 FAD dependent oxidoreductase Avi_7257 PF00171 Aldehyde dehydrogenase family Avi_7258 PF00701 Dihydrodipicolinate synthetase family Avi_7259 PF00392 Bacterial regulatory proteins, gntR family Avi_7259 PF07729 FCD domain Avi_7262 PF00392 Bacterial regulatory proteins, gntR family Avi_7262 PF07729 FCD domain Avi_7267 PF01546 Peptidase family M20/M25/M40 Avi_7268 PF00455 DeoR C terminal sensor domain Avi_7268 PF08220 DeoR-like helix-turn-helix domain Avi_7269 PF00005 ABC transporter Avi_7269 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7270 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7270 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_7271 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7278 PF00440 Bacterial regulatory proteins, tetR family Avi_7280 PF02630 SCO1/SenC Avi_7283 PF00873 AcrB/AcrD/AcrF family Avi_7287 PF00005 ABC transporter Avi_7289 PF01032 FecCD transport family Avi_7290 PF01032 FecCD transport family Avi_7292 PF01497 Periplasmic binding protein Avi_7293 PF07715 TonB-dependent Receptor Plug Domain Avi_7296 PF00550 Phosphopantetheine attachment site Avi_7296 PF00501 AMP-binding enzyme Avi_7296 PF07993 Male sterility protein Avi_7296 PF13193 AMP-binding enzyme C-terminal domain Avi_7296 PF00668 Condensation domain Avi_7296 PF00550 Phosphopantetheine attachment site Avi_7296 PF13193 AMP-binding enzyme C-terminal domain Avi_7296 PF00501 AMP-binding enzyme Avi_7296 PF00668 Condensation domain Avi_7296 PF07993 Male sterility protein Avi_7298 PF13193 AMP-binding enzyme C-terminal domain Avi_7298 PF00550 Phosphopantetheine attachment site Avi_7298 PF00668 Condensation domain Avi_7298 PF00501 AMP-binding enzyme Avi_7299 PF00668 Condensation domain Avi_7299 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_7299 PF16197 Ketoacyl-synthetase C-terminal extension Avi_7299 PF00698 Acyl transferase domain Avi_7299 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_7299 PF00550 Phosphopantetheine attachment site Avi_7303 PF13193 AMP-binding enzyme C-terminal domain Avi_7303 PF00668 Condensation domain Avi_7303 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_7303 PF00550 Phosphopantetheine attachment site Avi_7303 PF16197 Ketoacyl-synthetase C-terminal extension Avi_7303 PF00202 Aminotransferase class-III Avi_7303 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_7303 PF00501 AMP-binding enzyme Avi_7304 PF13649 Methyltransferase domain Avi_7306 PF00501 AMP-binding enzyme Avi_7306 PF13193 AMP-binding enzyme C-terminal domain Avi_7306 PF00668 Condensation domain Avi_7306 PF07993 Male sterility protein Avi_7306 PF00550 Phosphopantetheine attachment site Avi_7308 PF00501 AMP-binding enzyme Avi_7309 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_7309 PF16197 Ketoacyl-synthetase C-terminal extension Avi_7309 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_7309 PF00698 Acyl transferase domain Avi_7309 PF00550 Phosphopantetheine attachment site Avi_7309 PF00668 Condensation domain Avi_7310 PF00296 Luciferase-like monooxygenase Avi_7311 PF13193 AMP-binding enzyme C-terminal domain Avi_7311 PF00550 Phosphopantetheine attachment site Avi_7311 PF00668 Condensation domain Avi_7311 PF00501 AMP-binding enzyme Avi_7312 PF01554 MatE Avi_7320 PF02203 Tar ligand binding domain homologue Avi_7320 PF00672 HAMP domain Avi_7320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_7322 PF01112 Asparaginase Avi_7323 PF04951 D-aminopeptidase Avi_7325 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_7325 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7327 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7328 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7329 PF00005 ABC transporter Avi_7329 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7333 PF01325 Iron dependent repressor, N-terminal DNA binding domain Avi_7333 PF00480 ROK family Avi_7335 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7336 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7338 PF08402 TOBE domain Avi_7338 PF00005 ABC transporter Avi_7339 PF00132 Bacterial transferase hexapeptide (six repeats) Avi_7341 PF01547 Bacterial extracellular solute-binding protein Avi_7343 PF03459 TOBE domain Avi_7343 PF17912 MalK OB fold domain Avi_7343 PF00005 ABC transporter Avi_7344 PF07470 Glycosyl Hydrolase Family 88 Avi_7346 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7347 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7351 PF07729 FCD domain Avi_7351 PF00392 Bacterial regulatory proteins, gntR family Avi_7355 PF00005 ABC transporter Avi_7355 PF03459 TOBE domain Avi_7355 PF17912 MalK OB fold domain Avi_7358 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7361 PF00294 pfkB family carbohydrate kinase Avi_7364 PF13407 Periplasmic binding protein domain Avi_7365 PF00005 ABC transporter Avi_7366 PF02653 Branched-chain amino acid transport system / permease component Avi_7367 PF01418 Helix-turn-helix domain, rpiR family Avi_7367 PF01380 SIS domain Avi_7371 PF00107 Zinc-binding dehydrogenase Avi_7371 PF08240 Alcohol dehydrogenase GroES-like domain Avi_7373 PF12728 Helix-turn-helix domain Avi_7373 PF02661 Fic/DOC family Avi_7374 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Avi_7374 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Avi_7375 PF00106 short chain dehydrogenase Avi_7376 PF02653 Branched-chain amino acid transport system / permease component Avi_7377 PF00005 ABC transporter Avi_7379 PF00356 Bacterial regulatory proteins, lacI family Avi_7381 PF07690 Major Facilitator Superfamily Avi_7384 PF00462 Glutaredoxin Avi_7386 PF07972 NrdI Flavodoxin like Avi_7387 PF08343 Ribonucleotide reductase N-terminal Avi_7387 PF02867 Ribonucleotide reductase, barrel domain Avi_7387 PF00317 Ribonucleotide reductase, all-alpha domain Avi_7388 PF00268 Ribonucleotide reductase, small chain Avi_7389 PF01022 Bacterial regulatory protein, arsR family Avi_7390 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Avi_7392 PF01425 Amidase Avi_7393 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_7394 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7396 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_7396 PF03466 LysR substrate binding domain Avi_7398 PF02423 Ornithine cyclodeaminase/mu-crystallin family Avi_7399 PF01266 FAD dependent oxidoreductase Avi_7400 PF01042 Endoribonuclease L-PSP Avi_7402 PF01614 Bacterial transcriptional regulator Avi_7402 PF09339 IclR helix-turn-helix domain Avi_7405 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_7405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_7406 PF01613 Flavin reductase like domain Avi_7409 PF09339 IclR helix-turn-helix domain Avi_7409 PF01614 Bacterial transcriptional regulator Avi_7410 PF17645 Arylmalonate decarboxylase Avi_7413 PF01144 Coenzyme A transferase Avi_7416 PF07690 Major Facilitator Superfamily Avi_7417 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_7417 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_7423 PF01557 Fumarylacetoacetate (FAA) hydrolase family Avi_7425 PF01494 FAD binding domain Avi_7430 PF01557 Fumarylacetoacetate (FAA) hydrolase family Avi_7433 PF02653 Branched-chain amino acid transport system / permease component Avi_7433 PF11862 Domain of unknown function (DUF3382) Avi_7434 PF02653 Branched-chain amino acid transport system / permease component Avi_7436 PF00005 ABC transporter Avi_7437 PF12399 Branched-chain amino acid ATP-binding cassette transporter Avi_7437 PF00005 ABC transporter Avi_7440 PF00465 Iron-containing alcohol dehydrogenase Avi_7443 PF04444 Catechol dioxygenase N terminus Avi_7443 PF00775 Dioxygenase Avi_7452 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7453 PF00005 ABC transporter Avi_7453 PF08402 TOBE domain Avi_7454 PF00480 ROK family Avi_7455 PF01261 Xylose isomerase-like TIM barrel Avi_7457 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_7457 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Avi_7466 PF03167 Uracil DNA glycosylase superfamily Avi_7472 PF00356 Bacterial regulatory proteins, lacI family Avi_7475 PF00005 ABC transporter Avi_7476 PF02653 Branched-chain amino acid transport system / permease component Avi_7477 PF02126 Phosphotriesterase family Avi_7479 PF00294 pfkB family carbohydrate kinase Avi_7482 PF07687 Peptidase dimerisation domain Avi_7482 PF01546 Peptidase family M20/M25/M40 Avi_7483 PF00873 AcrB/AcrD/AcrF family Avi_7487 PF02321 Outer membrane efflux protein Avi_7488 PF00072 Response regulator receiver domain Avi_7488 PF00486 Transcriptional regulatory protein, C terminal Avi_7490 PF16527 Two-component sensor protein CpxA, periplasmic domain Avi_7490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_7490 PF00512 His Kinase A (phospho-acceptor) domain Avi_7490 PF00672 HAMP domain Avi_7497 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_7497 PF03466 LysR substrate binding domain Avi_7500 PF13610 DDE domain Avi_7502 PF00892 EamA-like transporter family Avi_7504 PF13683 Integrase core domain Avi_7504 PF13276 HTH-like domain Avi_7506 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7507 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7508 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_7509 PF00005 ABC transporter Avi_7510 PF00202 Aminotransferase class-III Avi_7513 PF01037 Lrp/AsnC ligand binding domain Avi_7516 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7517 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7518 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7518 PF12911 N-terminal TM domain of oligopeptide transport permease C Avi_7520 PF00005 ABC transporter Avi_7520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7522 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7522 PF00005 ABC transporter Avi_7524 PF00155 Aminotransferase class I and II Avi_7527 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Avi_7528 PF02441 Flavoprotein Avi_7529 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7533 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7533 PF00005 ABC transporter Avi_7536 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7536 PF00005 ABC transporter Avi_7538 PF01979 Amidohydrolase family Avi_7539 PF01546 Peptidase family M20/M25/M40 Avi_7539 PF07687 Peptidase dimerisation domain Avi_7540 PF00221 Aromatic amino acid lyase Avi_7544 PF05762 VWA domain containing CoxE-like protein Avi_7546 PF05406 WGR domain Avi_7549 PF07728 AAA domain (dynein-related subfamily) Avi_7550 PF00709 Adenylosuccinate synthetase Avi_7557 PF04717 Type VI secretion system, phage-baseplate injector Avi_7566 PF00665 Integrase core domain Avi_7566 PF13936 Helix-turn-helix domain Avi_7570 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Avi_7570 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Avi_7571 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Avi_7571 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Avi_7572 PF00723 Glycosyl hydrolases family 15 Avi_7572 PF09137 Glucodextranase, domain N Avi_7573 PF00155 Aminotransferase class I and II Avi_7573 PF00392 Bacterial regulatory proteins, gntR family Avi_7576 PF00795 Carbon-nitrogen hydrolase Avi_7577 PF04055 Radical SAM superfamily Avi_7577 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Avi_7579 PF00586 AIR synthase related protein, N-terminal domain Avi_7579 PF02769 AIR synthase related protein, C-terminal domain Avi_7580 PF13439 Glycosyltransferase Family 4 Avi_7580 PF00534 Glycosyl transferases group 1 Avi_7586 PF00384 Molybdopterin oxidoreductase Avi_7591 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7593 PF08402 TOBE domain Avi_7593 PF00005 ABC transporter Avi_7595 PF00440 Bacterial regulatory proteins, tetR family Avi_7595 PF17938 Tetracyclin repressor-like, C-terminal domain Avi_7597 PF00561 alpha/beta hydrolase fold Avi_7599 PF01613 Flavin reductase like domain Avi_7601 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7602 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7603 PF13416 Bacterial extracellular solute-binding protein Avi_7604 PF08402 TOBE domain Avi_7604 PF00005 ABC transporter Avi_7611 PF00392 Bacterial regulatory proteins, gntR family Avi_7611 PF07729 FCD domain Avi_7612 PF01402 Ribbon-helix-helix protein, copG family Avi_7612 PF08753 NikR C terminal nickel binding domain Avi_7613 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7614 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7616 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7617 PF00005 ABC transporter Avi_7618 PF00005 ABC transporter Avi_7621 PF00027 Cyclic nucleotide-binding domain Avi_7621 PF13545 Crp-like helix-turn-helix domain Avi_7623 PF01032 FecCD transport family Avi_7625 PF00005 ABC transporter Avi_7627 PF02630 SCO1/SenC Avi_7628 PF01965 DJ-1/PfpI family Avi_7629 PF04055 Radical SAM superfamily Avi_7629 PF06463 Molybdenum Cofactor Synthesis C Avi_7630 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_7631 PF11953 Domain of unknown function (DUF3470) Avi_7631 PF00037 4Fe-4S binding domain Avi_7633 PF01568 Molydopterin dinucleotide binding domain Avi_7633 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Avi_7633 PF00384 Molybdopterin oxidoreductase Avi_7634 PF07883 Cupin domain Avi_7634 PF12833 Helix-turn-helix domain Avi_7635 PF14525 AraC-binding-like domain Avi_7637 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Avi_7637 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_7637 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_7641 PF00990 Diguanylate cyclase, GGDEF domain Avi_7641 PF03707 Bacterial signalling protein N terminal repeat Avi_7641 PF00563 EAL domain Avi_7643 PF08447 PAS fold Avi_7643 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_7643 PF13426 PAS domain Avi_7648 PF02954 Bacterial regulatory protein, Fis family Avi_7648 PF00158 Sigma-54 interaction domain Avi_7648 PF01590 GAF domain Avi_7649 PF08240 Alcohol dehydrogenase GroES-like domain Avi_7649 PF00107 Zinc-binding dehydrogenase Avi_7652 PF03737 Aldolase/RraA Avi_7653 PF03466 LysR substrate binding domain Avi_7653 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_7654 PF00364 Biotin-requiring enzyme Avi_7655 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_7655 PF00289 Biotin carboxylase, N-terminal domain Avi_7655 PF02785 Biotin carboxylase C-terminal domain Avi_7658 PF02626 Carboxyltransferase domain, subdomain A and B Avi_7659 PF03746 LamB/YcsF family Avi_7661 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_7661 PF03466 LysR substrate binding domain Avi_7662 PF00106 short chain dehydrogenase Avi_7663 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7664 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7665 PF00005 ABC transporter Avi_7667 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_7669 PF13340 Putative transposase of IS4/5 family (DUF4096) Avi_7671 PF01609 Transposase DDE domain Avi_7674 PF01565 FAD binding domain Avi_7674 PF02913 FAD linked oxidases, C-terminal domain Avi_7675 PF02754 Cysteine-rich domain Avi_7675 PF13183 4Fe-4S dicluster domain Avi_7675 PF02665 Nitrate reductase gamma subunit Avi_7676 PF02913 FAD linked oxidases, C-terminal domain Avi_7676 PF01565 FAD binding domain Avi_7682 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_7682 PF14759 Reductase C-terminal Avi_7683 PF00067 Cytochrome P450 Avi_7686 PF00171 Aldehyde dehydrogenase family Avi_7687 PF00501 AMP-binding enzyme Avi_7687 PF13193 AMP-binding enzyme C-terminal domain Avi_7689 PF01039 Carboxyl transferase domain Avi_7690 PF00378 Enoyl-CoA hydratase/isomerase Avi_7691 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_7691 PF02785 Biotin carboxylase C-terminal domain Avi_7691 PF00289 Biotin carboxylase, N-terminal domain Avi_7691 PF00364 Biotin-requiring enzyme Avi_7692 PF00682 HMGL-like Avi_7694 PF00202 Aminotransferase class-III Avi_7698 PF02371 Transposase IS116/IS110/IS902 family Avi_7698 PF01548 Transposase Avi_7700 PF13683 Integrase core domain Avi_7700 PF13276 HTH-like domain Avi_8000 PF13614 AAA domain Avi_8000 PF00376 MerR family regulatory protein Avi_8001 PF02195 ParB-like nuclease domain Avi_8001 PF07506 RepB plasmid partitioning protein Avi_8002 PF11800 Replication protein C C-terminal region Avi_8002 PF03428 Replication protein C N-terminal domain Avi_8006 PF00589 Phage integrase family Avi_8008 PF04079 Segregation and condensation complex subunit ScpB Avi_8011 PF02371 Transposase IS116/IS110/IS902 family Avi_8011 PF01548 Transposase Avi_8015 PF02735 Ku70/Ku80 beta-barrel domain Avi_8016 PF02735 Ku70/Ku80 beta-barrel domain Avi_8017 PF04679 ATP dependent DNA ligase C terminal region Avi_8017 PF01068 ATP dependent DNA ligase domain Avi_8017 PF13298 DNA polymerase Ligase (LigD) Avi_8018 PF13358 DDE superfamily endonuclease Avi_8020 PF00128 Alpha amylase, catalytic domain Avi_8020 PF16657 Maltogenic Amylase, C-terminal domain Avi_8025 PF08447 PAS fold Avi_8025 PF13426 PAS domain Avi_8025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_8027 PF00216 Bacterial DNA-binding protein Avi_8029 PF01022 Bacterial regulatory protein, arsR family Avi_8032 PF13476 AAA domain Avi_8035 PF13700 Domain of unknown function (DUF4158) Avi_8035 PF01526 Tn3 transposase DDE domain Avi_8047 PF02534 Type IV secretory system Conjugative DNA transfer Avi_8048 PF06412 Conjugal transfer protein TraD Avi_8049 PF07820 TraC-like protein Avi_8066 PF03707 Bacterial signalling protein N terminal repeat Avi_8066 PF00990 Diguanylate cyclase, GGDEF domain Avi_8066 PF00563 EAL domain Avi_8067 PF01381 Helix-turn-helix Avi_8068 PF00990 Diguanylate cyclase, GGDEF domain Avi_8068 PF13188 PAS domain Avi_8068 PF00563 EAL domain Avi_8068 PF03707 Bacterial signalling protein N terminal repeat Avi_8070 PF13610 DDE domain Avi_8079 PF13847 Methyltransferase domain Avi_8079 PF17827 PrmC N-terminal domain Avi_8080 PF13358 DDE superfamily endonuclease Avi_8099 PF08401 Domain of unknown function (DUF1738) Avi_8099 PF13362 Toprim domain Avi_8099 PF18818 Metallopeptidase superfamily domain Avi_8103 PF01548 Transposase Avi_8103 PF02371 Transposase IS116/IS110/IS902 family Avi_8104 PF13358 DDE superfamily endonuclease Avi_8105 PF01548 Transposase Avi_8105 PF02371 Transposase IS116/IS110/IS902 family Avi_8114 PF02899 Phage integrase, N-terminal SAM-like domain Avi_8114 PF00589 Phage integrase family Avi_8115 PF00589 Phage integrase family Avi_8116 PF00589 Phage integrase family Avi_8116 PF02899 Phage integrase, N-terminal SAM-like domain Avi_8120 PF05284 Protein of unknown function (DUF736) Avi_8121 PF05284 Protein of unknown function (DUF736) Avi_8123 PF00216 Bacterial DNA-binding protein Avi_8126 PF05406 WGR domain Avi_8128 PF02534 Type IV secretory system Conjugative DNA transfer Avi_8129 PF06412 Conjugal transfer protein TraD Avi_8130 PF07820 TraC-like protein Avi_8131 PF17841 BID domain of Bartonella effector protein (Bep) Avi_8131 PF01443 Viral (Superfamily 1) RNA helicase Avi_8131 PF03389 MobA/MobL family Avi_8132 PF10502 Signal peptidase, peptidase S26 Avi_8135 PF06871 TraH_2 Avi_8138 PF09228 Prokaryotic Transcriptional repressor TraM Avi_8140 PF00196 Bacterial regulatory proteins, luxR family Avi_8140 PF03472 Autoinducer binding domain Avi_8142 PF01168 Alanine racemase, N-terminal domain Avi_8142 PF00842 Alanine racemase, C-terminal domain Avi_8143 PF01037 Lrp/AsnC ligand binding domain Avi_8147 PF08402 TOBE domain Avi_8147 PF00005 ABC transporter Avi_8148 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8149 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8150 PF00202 Aminotransferase class-III Avi_8152 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8156 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8157 PF13416 Bacterial extracellular solute-binding protein Avi_8158 PF08402 TOBE domain Avi_8158 PF00005 ABC transporter Avi_8160 PF00171 Aldehyde dehydrogenase family Avi_8162 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_8165 PF01266 FAD dependent oxidoreductase Avi_8169 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8171 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8172 PF00005 ABC transporter Avi_8172 PF08402 TOBE domain Avi_8174 PF02538 Hydantoinase B/oxoprolinase Avi_8176 PF05378 Hydantoinase/oxoprolinase N-terminal region Avi_8176 PF01968 Hydantoinase/oxoprolinase Avi_8180 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8183 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_8183 PF00005 ABC transporter Avi_8187 PF08240 Alcohol dehydrogenase GroES-like domain Avi_8187 PF00107 Zinc-binding dehydrogenase Avi_8188 PF00171 Aldehyde dehydrogenase family Avi_8195 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Avi_8195 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Avi_8198 PF13614 AAA domain Avi_8210 PF02534 Type IV secretory system Conjugative DNA transfer Avi_8212 PF03432 Relaxase/Mobilisation nuclease domain Avi_8213 PF07328 T-DNA border endonuclease VirD1 Avi_8214 PF07015 VirC1 protein Avi_8215 PF07181 VirC2 protein Avi_8217 PF00486 Transcriptional regulatory protein, C terminal Avi_8217 PF00072 Response regulator receiver domain Avi_8218 PF00437 Type II/IV secretion system protein Avi_8219 PF03743 Bacterial conjugation TrbI-like protein Avi_8220 PF03524 Conjugal transfer protein Avi_8221 PF04335 VirB8 protein Avi_8222 PF04610 TrbL/VirB6 plasmid conjugal transfer protein Avi_8224 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Avi_8225 PF05101 Type IV secretory pathway, VirB3-like protein Avi_8226 PF04956 TrbC/VIRB2 family Avi_8227 PF01464 Transglycosylase SLT domain Avi_8231 PF13007 Transposase C of IS166 homeodomain Avi_8231 PF13817 IS66 C-terminal element Avi_8231 PF03050 Transposase IS66 family Avi_8231 PF13005 zinc-finger binding domain of transposase IS66 Avi_8243 PF07229 VirE2 Avi_8244 PF12189 Single-strand DNA-binding protein Avi_8249 PF13005 zinc-finger binding domain of transposase IS66 Avi_8249 PF13007 Transposase C of IS166 homeodomain Avi_8249 PF13817 IS66 C-terminal element Avi_8249 PF03050 Transposase IS66 family Avi_8250 PF00512 His Kinase A (phospho-acceptor) domain Avi_8250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_8251 PF00067 Cytochrome P450 Avi_8253 PF00589 Phage integrase family Avi_8255 PF13333 Integrase core domain Avi_8255 PF13276 HTH-like domain Avi_8255 PF00665 Integrase core domain Avi_8256 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Avi_8257 PF02899 Phage integrase, N-terminal SAM-like domain Avi_8257 PF00589 Phage integrase family Avi_8258 PF13358 DDE superfamily endonuclease Avi_8259 PF00589 Phage integrase family Avi_8259 PF02899 Phage integrase, N-terminal SAM-like domain Avi_8260 PF02899 Phage integrase, N-terminal SAM-like domain Avi_8260 PF00589 Phage integrase family Avi_8262 PF02899 Phage integrase, N-terminal SAM-like domain Avi_8262 PF00589 Phage integrase family Avi_8264 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Avi_8266 PF01527 Transposase Avi_8269 PF02027 RolB/RolC glucosidase family Avi_8271 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Avi_8275 PF04679 ATP dependent DNA ligase C terminal region Avi_8275 PF13298 DNA polymerase Ligase (LigD) Avi_8275 PF01068 ATP dependent DNA ligase domain Avi_8276 PF02735 Ku70/Ku80 beta-barrel domain Avi_8280 PF01527 Transposase Avi_8282 PF00872 Transposase, Mutator family Avi_8287 PF01425 Amidase Avi_8288 PF01593 Flavin containing amine oxidoreductase Avi_8288 PF02027 RolB/RolC glucosidase family Avi_8291 PF13358 DDE superfamily endonuclease Avi_8295 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Avi_8296 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Avi_8300 PF00196 Bacterial regulatory proteins, luxR family Avi_8300 PF03472 Autoinducer binding domain Avi_8301 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_8301 PF04324 BFD-like [2Fe-2S] binding domain Avi_8303 PF01266 FAD dependent oxidoreductase Avi_8304 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8305 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8306 PF08402 TOBE domain Avi_8306 PF00005 ABC transporter Avi_8307 PF13416 Bacterial extracellular solute-binding protein Avi_8309 PF03466 LysR substrate binding domain Avi_8309 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_8310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_8310 PF00005 ABC transporter Avi_8312 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8313 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_8316 PF04324 BFD-like [2Fe-2S] binding domain Avi_8316 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_8320 PF01968 Hydantoinase/oxoprolinase Avi_8320 PF05378 Hydantoinase/oxoprolinase N-terminal region Avi_8321 PF01266 FAD dependent oxidoreductase Avi_8322 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_8322 PF03466 LysR substrate binding domain Avi_8323 PF03743 Bacterial conjugation TrbI-like protein Avi_8325 PF03524 Conjugal transfer protein Avi_8326 PF04335 VirB8 protein Avi_8328 PF04610 TrbL/VirB6 plasmid conjugal transfer protein Avi_8329 PF10907 Protein of unknown function (DUF2749) Avi_8331 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Avi_8332 PF05101 Type IV secretory pathway, VirB3-like protein Avi_8333 PF04956 TrbC/VIRB2 family Avi_8334 PF00437 Type II/IV secretion system protein Avi_8335 PF00765 Autoinducer synthase Avi_8336 PF17413 Outer membrane lipoprotein virB7 Avi_9001 PF13614 AAA domain Avi_9002 PF02195 ParB-like nuclease domain Avi_9002 PF07506 RepB plasmid partitioning protein Avi_9003 PF03428 Replication protein C N-terminal domain Avi_9003 PF11800 Replication protein C C-terminal region Avi_9004 PF00239 Resolvase, N terminal domain Avi_9008 PF00589 Phage integrase family Avi_9010 PF04079 Segregation and condensation complex subunit ScpB Avi_9026 PF13426 PAS domain Avi_9026 PF13581 Histidine kinase-like ATPase domain Avi_9026 PF07568 Histidine kinase Avi_9028 PF00072 Response regulator receiver domain Avi_9028 PF13426 PAS domain Avi_9028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_9037 PF02690 Na+/Pi-cotransporter Avi_9041 PF13426 PAS domain Avi_9041 PF00072 Response regulator receiver domain Avi_9041 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_9047 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_9047 PF00072 Response regulator receiver domain Avi_9047 PF13426 PAS domain Avi_9052 PF10503 Esterase PHB depolymerase Avi_9065 PF02203 Tar ligand binding domain homologue Avi_9065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_9065 PF00672 HAMP domain Avi_9067 PF01609 Transposase DDE domain Avi_9068 PF12833 Helix-turn-helix domain Avi_9068 PF14525 AraC-binding-like domain Avi_9071 PF01609 Transposase DDE domain Avi_9076 PF00672 HAMP domain Avi_9076 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_9077 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_9077 PF13426 PAS domain Avi_9077 PF08447 PAS fold Avi_9083 PF08446 PAS fold Avi_9083 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_9083 PF01590 GAF domain Avi_9083 PF00512 His Kinase A (phospho-acceptor) domain Avi_9083 PF00360 Phytochrome region Avi_9088 PF00672 HAMP domain Avi_9088 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_9096 PF05717 IS66 Orf2 like protein Avi_9098 PF00989 PAS fold Avi_9098 PF00512 His Kinase A (phospho-acceptor) domain Avi_9098 PF16736 Single Cache-like Avi_9098 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_9099 PF01339 CheB methylesterase Avi_9100 PF01739 CheR methyltransferase, SAM binding domain Avi_9100 PF03705 CheR methyltransferase, all-alpha domain Avi_9103 PF00072 Response regulator receiver domain Avi_9103 PF01627 Hpt domain Avi_9103 PF00512 His Kinase A (phospho-acceptor) domain Avi_9103 PF00672 HAMP domain Avi_9103 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_9103 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Avi_9109 PF01381 Helix-turn-helix Avi_9114 PF01609 Transposase DDE domain Avi_9115 PF13340 Putative transposase of IS4/5 family (DUF4096) Avi_9118 PF02887 Pyruvate kinase, alpha/beta domain Avi_9118 PF00224 Pyruvate kinase, barrel domain Avi_9119 PF05161 MOFRL family Avi_9119 PF13660 Domain of unknown function (DUF4147) Avi_9120 PF00180 Isocitrate/isopropylmalate dehydrogenase Avi_9121 PF07690 Major Facilitator Superfamily Avi_9122 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_9122 PF03466 LysR substrate binding domain Avi_9123 PF01202 Shikimate kinase Avi_9125 PF00005 ABC transporter Avi_9126 PF02653 Branched-chain amino acid transport system / permease component Avi_9128 PF01968 Hydantoinase/oxoprolinase Avi_9128 PF05378 Hydantoinase/oxoprolinase N-terminal region Avi_9130 PF00202 Aminotransferase class-III Avi_9131 PF00356 Bacterial regulatory proteins, lacI family Avi_9134 PF01548 Transposase Avi_9134 PF02371 Transposase IS116/IS110/IS902 family Avi_9140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_9140 PF00005 ABC transporter Avi_9142 PF00005 ABC transporter Avi_9142 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_9143 PF00528 Binding-protein-dependent transport system inner membrane component Avi_9144 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_9145 PF07702 UTRA domain Avi_9145 PF00392 Bacterial regulatory proteins, gntR family Avi_9146 PF01380 SIS domain Avi_9147 PF00294 pfkB family carbohydrate kinase Avi_9148 PF01968 Hydantoinase/oxoprolinase Avi_9148 PF05378 Hydantoinase/oxoprolinase N-terminal region Avi_9149 PF02538 Hydantoinase B/oxoprolinase Avi_9150 PF01958 Domain of unknown function DUF108 Avi_9150 PF03447 Homoserine dehydrogenase, NAD binding domain Avi_9151 PF00291 Pyridoxal-phosphate dependent enzyme Avi_9152 PF00155 Aminotransferase class I and II Avi_9154 PF01933 Uncharacterised protein family UPF0052 Avi_9155 PF02811 PHP domain Avi_9155 PF01336 OB-fold nucleic acid binding domain Avi_9155 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Avi_9155 PF14579 Helix-hairpin-helix motif Avi_9155 PF07733 Bacterial DNA polymerase III alpha NTPase domain Avi_9165 PF17762 HTH domain found in ParB protein Avi_9165 PF02195 ParB-like nuclease domain Avi_9175 PF05284 Protein of unknown function (DUF736) Avi_9178 PF00216 Bacterial DNA-binding protein Avi_9186 PF02534 Type IV secretory system Conjugative DNA transfer Avi_9187 PF06412 Conjugal transfer protein TraD Avi_9188 PF07820 TraC-like protein Avi_9189 PF03389 MobA/MobL family Avi_9189 PF17841 BID domain of Bartonella effector protein (Bep) Avi_9189 PF01443 Viral (Superfamily 1) RNA helicase Avi_9191 PF10502 Signal peptidase, peptidase S26 Avi_9192 PF00795 Carbon-nitrogen hydrolase Avi_9193 PF06871 TraH_2 Avi_9194 PF09228 Prokaryotic Transcriptional repressor TraM Avi_9195 PF00196 Bacterial regulatory proteins, luxR family Avi_9195 PF03472 Autoinducer binding domain Avi_9197 PF00005 ABC transporter Avi_9197 PF17912 MalK OB fold domain Avi_9198 PF00528 Binding-protein-dependent transport system inner membrane component Avi_9200 PF01547 Bacterial extracellular solute-binding protein Avi_9211 PF02371 Transposase IS116/IS110/IS902 family Avi_9211 PF01548 Transposase Avi_9216 PF13533 Biotin-lipoyl like Avi_9217 PF00005 ABC transporter Avi_9219 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Avi_9219 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Avi_9220 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Avi_9221 PF02233 NAD(P) transhydrogenase beta subunit Avi_9222 PF00171 Aldehyde dehydrogenase family Avi_9223 PF08240 Alcohol dehydrogenase GroES-like domain Avi_9223 PF00107 Zinc-binding dehydrogenase Avi_9228 PF01494 FAD binding domain Avi_9229 PF00440 Bacterial regulatory proteins, tetR family Avi_9230 PF00561 alpha/beta hydrolase fold Avi_9233 PF01494 FAD binding domain Avi_9237 PF00005 ABC transporter Avi_9239 PF00528 Binding-protein-dependent transport system inner membrane component Avi_9240 PF00528 Binding-protein-dependent transport system inner membrane component Avi_9244 PF00392 Bacterial regulatory proteins, gntR family Avi_9247 PF01012 Electron transfer flavoprotein domain Avi_9248 PF01012 Electron transfer flavoprotein domain Avi_9248 PF00766 Electron transfer flavoprotein FAD-binding domain Avi_9249 PF03807 NADP oxidoreductase coenzyme F420-dependent Avi_9249 PF14748 Pyrroline-5-carboxylate reductase dimerisation Avi_9252 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase Avi_9253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_9253 PF03466 LysR substrate binding domain Avi_9257 PF03743 Bacterial conjugation TrbI-like protein Avi_9259 PF03524 Conjugal transfer protein Avi_9260 PF04335 VirB8 protein Avi_9261 PF04610 TrbL/VirB6 plasmid conjugal transfer protein Avi_9262 PF10907 Protein of unknown function (DUF2749) Avi_9265 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Avi_9267 PF05101 Type IV secretory pathway, VirB3-like protein Avi_9268 PF04956 TrbC/VIRB2 family Avi_9269 PF00437 Type II/IV secretion system protein Avi_9270 PF00765 Autoinducer synthase Avi_9501 PF13614 AAA domain Avi_9502 PF02195 ParB-like nuclease domain Avi_9502 PF07506 RepB plasmid partitioning protein Avi_9503 PF11800 Replication protein C C-terminal region Avi_9503 PF03428 Replication protein C N-terminal domain Avi_9504 PF12697 Alpha/beta hydrolase family Avi_9505 PF07694 5TMR of 5TMR-LYT Avi_9505 PF00990 Diguanylate cyclase, GGDEF domain Avi_9510 PF02899 Phage integrase, N-terminal SAM-like domain Avi_9510 PF00589 Phage integrase family Avi_9513 PF11972 HTH DNA binding domain Avi_9513 PF07756 Protein of unknown function (DUF1612) Avi_9516 PF00318 Ribosomal protein S2 Avi_9532 PF00905 Penicillin binding protein transpeptidase domain Avi_9532 PF03717 Penicillin-binding Protein dimerisation domain Avi_9533 PF01381 Helix-turn-helix Avi_9546 PF00313 'Cold-shock' DNA-binding domain Avi_9553 PF02195 ParB-like nuclease domain Avi_9553 PF17762 HTH domain found in ParB protein Avi_9572 PF05284 Protein of unknown function (DUF736) Avi_9580 PF05284 Protein of unknown function (DUF736) Avi_9587 PF05406 WGR domain Avi_9589 PF02534 Type IV secretory system Conjugative DNA transfer Avi_9590 PF06412 Conjugal transfer protein TraD Avi_9593 PF07820 TraC-like protein Avi_9595 PF17841 BID domain of Bartonella effector protein (Bep) Avi_9595 PF01443 Viral (Superfamily 1) RNA helicase Avi_9595 PF03389 MobA/MobL family Avi_9596 PF10502 Signal peptidase, peptidase S26 Avi_9597 PF00795 Carbon-nitrogen hydrolase Avi_9599 PF06871 TraH_2 Avi_9607 PF00155 Aminotransferase class I and II Avi_9608 PF08502 LeuA allosteric (dimerisation) domain Avi_9608 PF00682 HMGL-like Avi_9610 PF00005 ABC transporter Avi_9610 PF00664 ABC transporter transmembrane region Avi_9616 PF01695 IstB-like ATP binding protein Avi_9617 PF00665 Integrase core domain Avi_9620 PF01527 Transposase Avi_9623 PF03050 Transposase IS66 family Avi_9623 PF13007 Transposase C of IS166 homeodomain Avi_9623 PF13817 IS66 C-terminal element Avi_9623 PF13005 zinc-finger binding domain of transposase IS66 Avi_9626 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Avi_9629 PF00009 Elongation factor Tu GTP binding domain Avi_9630 PF01507 Phosphoadenosine phosphosulfate reductase family Avi_9634 PF00694 Aconitase C-terminal domain Avi_9636 PF00330 Aconitase family (aconitate hydratase) Avi_9641 PF00501 AMP-binding enzyme Avi_9641 PF00550 Phosphopantetheine attachment site Avi_9641 PF00501 AMP-binding enzyme Avi_9641 PF13193 AMP-binding enzyme C-terminal domain Avi_9641 PF00550 Phosphopantetheine attachment site Avi_9641 PF13193 AMP-binding enzyme C-terminal domain Avi_9641 PF00668 Condensation domain Avi_9641 PF00668 Condensation domain Avi_9643 PF00501 AMP-binding enzyme Avi_9643 PF00975 Thioesterase domain Avi_9643 PF00550 Phosphopantetheine attachment site Avi_9643 PF13193 AMP-binding enzyme C-terminal domain Avi_9643 PF00668 Condensation domain Avi_9647 PF03743 Bacterial conjugation TrbI-like protein Avi_9648 PF08139 Prokaryotic membrane lipoprotein lipid attachment site Avi_9650 PF03524 Conjugal transfer protein Avi_9651 PF04335 VirB8 protein Avi_9653 PF04610 TrbL/VirB6 plasmid conjugal transfer protein Avi_9656 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Avi_9658 PF05101 Type IV secretory pathway, VirB3-like protein Avi_9659 PF04956 TrbC/VIRB2 family Avi_9661 PF00437 Type II/IV secretion system protein Avi_9665 PF00196 Bacterial regulatory proteins, luxR family Avi_9665 PF03472 Autoinducer binding domain Avi_9666 PF00765 Autoinducer synthase Avi_9800 PF00376 MerR family regulatory protein Avi_9800 PF13614 AAA domain Avi_9801 PF07506 RepB plasmid partitioning protein Avi_9801 PF02195 ParB-like nuclease domain Avi_9802 PF11800 Replication protein C C-terminal region Avi_9802 PF03428 Replication protein C N-terminal domain Avi_9810 PF02534 Type IV secretory system Conjugative DNA transfer Avi_9811 PF00437 Type II/IV secretion system protein Avi_9812 PF03743 Bacterial conjugation TrbI-like protein Avi_9819 PF01464 Transglycosylase SLT domain Avi_9821 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Avi_9822 PF04956 TrbC/VIRB2 family Avi_9824 PF01464 Transglycosylase SLT domain Avi_9833 PF00239 Resolvase, N terminal domain Avi_9833 PF02796 Helix-turn-helix domain of resolvase Avi_9835 PF08281 Sigma-70, region 4 Avi_9835 PF00665 Integrase core domain Avi_9836 PF01695 IstB-like ATP binding protein Avi_9837 PF01527 Transposase Avi_9838 PF13276 HTH-like domain Avi_9838 PF00665 Integrase core domain Avi_9838 PF13333 Integrase core domain Avi_9841 PF00211 Adenylate and Guanylate cyclase catalytic domain Avi_9841 PF00072 Response regulator receiver domain Avi_9846 PF00486 Transcriptional regulatory protein, C terminal Avi_9846 PF00072 Response regulator receiver domain Avi_9847 PF00512 His Kinase A (phospho-acceptor) domain Avi_9847 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_9847 PF00672 HAMP domain Avi_9859 PF04945 YHS domain Avi_9863 PF09278 MerR, DNA binding Avi_9863 PF00376 MerR family regulatory protein Avi_9864 PF00403 Heavy-metal-associated domain Avi_9869 PF00873 AcrB/AcrD/AcrF family Avi_9882 PF01850 PIN domain Avi_9896 PF17762 HTH domain found in ParB protein Avi_9896 PF02195 ParB-like nuclease domain Avi_9898 PF00665 Integrase core domain Avi_9898 PF13333 Integrase core domain Avi_9898 PF13276 HTH-like domain Avi_9899 PF01527 Transposase Avi_9907 PF18543 Intracellular delivery domain Avi_9907 PF02661 Fic/DOC family Avi_9909 PF18818 Metallopeptidase superfamily domain Avi_9909 PF08401 Domain of unknown function (DUF1738) Avi_9914 PF02224 Cytidylate kinase Avi_9917 PF07756 Protein of unknown function (DUF1612) Avi_9917 PF11972 HTH DNA binding domain