Avi_0001 PF03618 Avi_0001 Avi_0002 PF02545 Maf-like protein Avi_0004 PF01488 Shikimate / quinate 5-dehydrogenase Avi_0004 PF08501 Shikimate dehydrogenase substrate binding domain Avi_0005 PF01121 Dephospho-CoA kinase Avi_0006 PF00929 Exonuclease Avi_0007 PF02556 Preprotein translocase subunit SecB Avi_0008 PF04186 Avi_0008 Avi_0009 PF04280 Tim44-like domain Avi_0010 PF03562 MltA specific insert domain Avi_0010 PF06725 3D domain Avi_0011 PF01713 Smr domain Avi_0012 PF13560 Helix-turn-helix domain Avi_0013 PF00204 DNA gyrase B Avi_0013 PF00986 DNA gyrase B subunit, carboxyl terminus Avi_0013 PF01751 Toprim domain Avi_0013 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0014 PF00881 Nitroreductase family Avi_0016 PF06850 Avi_0016 Avi_0017 PF11014 Avi_0017 Avi_0018 PF01863 Protein of unknown function DUF45 Avi_0019 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Avi_0020 PF00291 Pyridoxal-phosphate dependent enzyme Avi_0021 PF00290 Tryptophan synthase alpha chain Avi_0022 PF01039 Carboxyl transferase domain Avi_0024 PF08245 Mur ligase middle domain Avi_0025 PF09929 Avi_0025 Avi_0028 PF00085 Thioredoxin Avi_0030 PF07182 Avi_0030 Avi_0031 PF00004 ATPase family associated with various cellular activities (AAA) Avi_0031 PF07724 AAA domain (Cdc48 subfamily) Avi_0031 PF10431 C-terminal, D2-small domain, of ClpB protein Avi_0032 PF00227 Proteasome subunit Avi_0033 PF00475 Imidazoleglycerol-phosphate dehydratase Avi_0035 PF00117 Glutamine amidotransferase class-I Avi_0036 PF00977 Histidine biosynthesis protein Avi_0037 PF00977 Histidine biosynthesis protein Avi_0038 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Avi_0039 PF00485 Phosphoribulokinase / Uridine kinase family Avi_0040 PF11578 Protein of unknown function (DUF3237) Avi_0041 PF00472 RF-1 domain Avi_0042 PF01293 Phosphoenolpyruvate carboxykinase Avi_0044 PF00072 Response regulator receiver domain Avi_0044 PF00486 Transcriptional regulatory protein, C terminal Avi_0045 PF00512 His Kinase A (phospho-acceptor) domain Avi_0045 PF00672 HAMP domain Avi_0045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0045 PF13755 Avi_0045 Avi_0045 PF13756 Avi_0045 Avi_0046 PF07475 HPr Serine kinase C-terminal domain Avi_0047 PF03610 PTS system fructose IIA component Avi_0048 PF00381 PTS HPr component phosphorylation site Avi_0049 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Avi_0049 PF05221 S-adenosyl-L-homocysteine hydrolase Avi_0050 PF00512 His Kinase A (phospho-acceptor) domain Avi_0050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0050 PF12860 Avi_0050 Avi_0050 PF13188 PAS domain Avi_0051 PF01636 Phosphotransferase enzyme family Avi_0051 PF02367 Uncharacterised P-loop hydrolase UPF0079 Avi_0053 PF12804 MobA-like NTP transferase domain Avi_0055 PF12705 PD-(D/E)XK nuclease superfamily Avi_0056 PF00580 UvrD/REP helicase N-terminal domain Avi_0056 PF12705 PD-(D/E)XK nuclease superfamily Avi_0056 PF13361 UvrD-like helicase C-terminal domain Avi_0057 PF01274 Malate synthase Avi_0061 PF03734 L,D-transpeptidase catalytic domain Avi_0062 PF06319 Protein of unknown function (DUF1052) Avi_0063 PF00072 Response regulator receiver domain Avi_0063 PF02954 Bacterial regulatory protein, Fis family Avi_0064 PF00512 His Kinase A (phospho-acceptor) domain Avi_0064 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0067 PF00270 DEAD/DEAH box helicase Avi_0067 PF00271 Helicase conserved C-terminal domain Avi_0067 PF04408 Helicase associated domain (HA2) Avi_0067 PF08482 Avi_0067 Avi_0068 PF02423 Ornithine cyclodeaminase/mu-crystallin family Avi_0070 PF00083 Sugar (and other) transporter Avi_0071 PF00701 Dihydrodipicolinate synthetase family Avi_0072 PF00356 Bacterial regulatory proteins, lacI family Avi_0072 PF13377 Periplasmic binding protein-like domain Avi_0074 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_0074 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Avi_0075 PF01380 SIS domain Avi_0075 PF01418 Helix-turn-helix domain, rpiR family Avi_0076 PF00294 pfkB family carbohydrate kinase Avi_0076 PF09863 Uncharacterized protein conserved in bacteria (DUF2090) Avi_0077 PF00205 Thiamine pyrophosphate enzyme, central domain Avi_0077 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Avi_0077 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Avi_0078 PF01261 Xylose isomerase-like TIM barrel Avi_0080 PF04962 KduI/IolB family Avi_0083 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_0084 PF12915 Avi_0084 Avi_0085 PF00106 short chain dehydrogenase Avi_0086 PF02353 Mycolic acid cyclopropane synthetase Avi_0087 PF07103 Avi_0087 Avi_0088 PF01593 Flavin containing amine oxidoreductase Avi_0089 PF04542 Sigma-70 region 2 Avi_0089 PF04545 Sigma-70, region 4 Avi_0090 PF12973 ChrR Cupin-like domain Avi_0091 PF09945 Avi_0091 Avi_0092 PF00455 Avi_0092 Avi_0092 PF08220 DeoR-like helix-turn-helix domain Avi_0094 PF01266 FAD dependent oxidoreductase Avi_0094 PF16901 Avi_0094 Avi_0095 PF00005 ABC transporter Avi_0096 PF00005 ABC transporter Avi_0096 PF08402 TOBE domain Avi_0097 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0098 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0099 PF09928 Avi_0099 Avi_0102 PF00034 Cytochrome c Avi_0103 PF02348 Cytidylyltransferase Avi_0105 PF00800 Prephenate dehydratase Avi_0107 PF00933 Glycosyl hydrolase family 3 N terminal domain Avi_0108 PF00293 NUDIX domain Avi_0108 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain Avi_0108 PF09297 NADH pyrophosphatase zinc ribbon domain Avi_0109 PF01230 HIT domain Avi_0110 PF12169 DNA polymerase III subunits gamma and tau domain III Avi_0110 PF12362 Avi_0110 Avi_0110 PF13177 DNA polymerase III, delta subunit Avi_0111 PF02575 YbaB/EbfC DNA-binding family Avi_0112 PF10262 Rdx family Avi_0113 PF07411 Domain of unknown function (DUF1508) Avi_0114 PF13673 Acetyltransferase (GNAT) domain Avi_0115 PF01381 Helix-turn-helix Avi_0115 PF07883 Cupin domain Avi_0116 PF00091 Tubulin/FtsZ family, GTPase domain Avi_0116 PF12327 FtsZ family, C-terminal domain Avi_0118 PF00009 Elongation factor Tu GTP binding domain Avi_0118 PF00679 Elongation factor G C-terminus Avi_0118 PF03144 Elongation factor Tu domain 2 Avi_0118 PF06421 GTP-binding protein LepA C-terminus Avi_0120 PF01612 3'-5' exonuclease Avi_0122 PF00884 Sulfatase Avi_0122 PF16347 Avi_0122 Avi_0126 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Avi_0126 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Avi_0126 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Avi_0126 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Avi_0127 PF03061 Thioesterase superfamily Avi_0128 PF03547 Avi_0128 Avi_0131 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Avi_0134 PF03960 ArsC family Avi_0136 PF04073 Aminoacyl-tRNA editing domain Avi_0137 PF02073 Thermophilic metalloprotease (M29) Avi_0142 PF00313 'Cold-shock' DNA-binding domain Avi_0143 PF02601 Avi_0143 Avi_0143 PF13742 Avi_0143 Avi_0148 PF00535 Glycosyl transferase family 2 Avi_0149 PF04138 Avi_0149 Avi_0150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_0151 PF00248 Aldo/keto reductase family Avi_0152 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0152 PF03466 LysR substrate binding domain Avi_0153 PF00248 Aldo/keto reductase family Avi_0154 PF06186 Avi_0154 Avi_0155 PF03473 MOSC domain Avi_0156 PF02132 RecR protein Avi_0156 PF13662 Toprim domain Avi_0157 PF01471 Putative peptidoglycan binding domain Avi_0157 PF13406 Transglycosylase SLT domain Avi_0158 PF00353 Hemolysin-type calcium-binding repeat (2 copies) Avi_0160 PF00353 Hemolysin-type calcium-binding repeat (2 copies) Avi_0161 PF04577 Avi_0161 Avi_0162 PF00353 Hemolysin-type calcium-binding repeat (2 copies) Avi_0163 PF05977 Transmembrane secretion effector Avi_0164 PF02576 Uncharacterised BCR, YhbC family COG0779 Avi_0164 PF17384 Avi_0164 Avi_0166 PF00575 S1 RNA binding domain Avi_0166 PF08529 NusA N-terminal domain Avi_0166 PF13184 NusA-like KH domain Avi_0166 PF14520 Helix-hairpin-helix domain Avi_0168 PF04296 Protein of unknown function (DUF448) Avi_0169 PF00009 Elongation factor Tu GTP binding domain Avi_0169 PF04760 Translation initiation factor IF-2, N-terminal region Avi_0169 PF08364 Avi_0169 Avi_0169 PF11987 Translation-initiation factor 2 Avi_0170 PF02033 Ribosome-binding factor A Avi_0171 PF01509 TruB family pseudouridylate synthase (N terminal domain) Avi_0171 PF09157 Pseudouridine synthase II TruB, C-terminal Avi_0171 PF16198 Avi_0171 Avi_0173 PF00312 Ribosomal protein S15 Avi_0175 PF00013 KH domain Avi_0175 PF00575 S1 RNA binding domain Avi_0175 PF01138 3' exoribonuclease family, domain 1 Avi_0175 PF03725 3' exoribonuclease family, domain 2 Avi_0175 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Avi_0178 PF05175 Methyltransferase small domain Avi_0179 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_0180 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_0180 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_0181 PF07977 FabA-like domain Avi_0183 PF01475 Ferric uptake regulator family Avi_0184 PF03458 Avi_0184 Avi_0190 PF07690 Major Facilitator Superfamily Avi_0191 PF09538 Avi_0191 Avi_0193 PF02224 Cytidylate kinase Avi_0194 PF00575 S1 RNA binding domain Avi_0196 PF02915 Rubrerythrin Avi_0197 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP Avi_0199 PF12697 Alpha/beta hydrolase family Avi_0200 PF00707 Translation initiation factor IF-3, C-terminal domain Avi_0200 PF05198 Translation initiation factor IF-3, N-terminal domain Avi_0202 PF00072 Response regulator receiver domain Avi_0202 PF00486 Transcriptional regulatory protein, C terminal Avi_0203 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0205 PF01632 Ribosomal protein L35 Avi_0206 PF00453 Ribosomal protein L20 Avi_0208 PF01409 tRNA synthetases class II core domain (F) Avi_0208 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Avi_0209 PF01588 Putative tRNA binding domain Avi_0209 PF03147 Ferredoxin-fold anticodon binding domain Avi_0209 PF03483 B3/4 domain Avi_0209 PF03484 tRNA synthetase B5 domain Avi_0210 PF07886 Avi_0210 Avi_0212 PF00482 Type II secretion system (T2SS), protein F Avi_0213 PF00482 Type II secretion system (T2SS), protein F Avi_0214 PF00437 Type II/IV secretion system protein Avi_0216 PF09476 Avi_0216 Avi_0217 PF00263 Avi_0217 Avi_0217 PF04972 BON domain Avi_0217 PF13629 Avi_0217 Avi_0218 PF08666 SAF domain Avi_0218 PF16976 Avi_0218 Avi_0221 PF01478 Type IV leader peptidase family Avi_0222 PF04964 Avi_0222 Avi_0223 PF04964 Avi_0223 Avi_0224 PF13629 Avi_0224 Avi_0226 PF07811 Avi_0226 Avi_0228 PF07811 Avi_0228 Avi_0229 PF01676 Metalloenzyme superfamily Avi_0230 PF00962 Adenosine/AMP deaminase Avi_0231 PF14681 Uracil phosphoribosyltransferase Avi_0232 PF13975 Avi_0232 Avi_0233 PF01810 Avi_0233 Avi_0235 PF00300 Histidine phosphatase superfamily (branch 1) Avi_0237 PF01113 Dihydrodipicolinate reductase, N-terminus Avi_0237 PF05173 Dihydrodipicolinate reductase, C-terminus Avi_0238 PF00005 ABC transporter Avi_0238 PF00664 ABC transporter transmembrane region Avi_0239 PF02685 Glucokinase Avi_0240 PF02142 MGS-like domain Avi_0241 PF03411 Penicillin-insensitive murein endopeptidase Avi_0244 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_0245 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0246 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0247 PF00005 ABC transporter Avi_0247 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_0248 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Avi_0250 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Avi_0256 PF02608 Basic membrane protein Avi_0258 PF00005 ABC transporter Avi_0259 PF02653 Avi_0259 Avi_0260 PF02653 Avi_0260 Avi_0262 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Avi_0263 PF01048 Phosphorylase superfamily Avi_0264 PF01791 DeoC/LacD family aldolase Avi_0265 PF00591 Glycosyl transferase family, a/b domain Avi_0265 PF02885 Glycosyl transferase family, helical bundle domain Avi_0265 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Avi_0266 PF00392 Bacterial regulatory proteins, gntR family Avi_0266 PF07702 UTRA domain Avi_0267 PF06754 Avi_0267 Avi_0269 PF05845 Bacterial phosphonate metabolism protein (PhnH) Avi_0270 PF05861 Avi_0270 Avi_0273 PF06007 Avi_0273 Avi_0274 PF00005 ABC transporter Avi_0275 PF00005 ABC transporter Avi_0277 PF00132 Bacterial transferase hexapeptide (six repeats) Avi_0278 PF00005 ABC transporter Avi_0280 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein Avi_0282 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0284 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0286 PF06299 Avi_0286 Avi_0287 PF07969 Amidohydrolase family Avi_0289 PF01810 Avi_0289 Avi_0290 PF07721 Tetratricopeptide repeat Avi_0290 PF13414 TPR repeat Avi_0292 PF00883 Cytosol aminopeptidase family, catalytic domain Avi_0293 PF04264 YceI-like domain Avi_0295 PF01292 Prokaryotic cytochrome b561 Avi_0295 PF04264 YceI-like domain Avi_0296 PF01047 MarR family Avi_0297 PF00877 NlpC/P60 family Avi_0299 PF00476 DNA polymerase family A Avi_0299 PF01367 5'-3' exonuclease, C-terminal SAM fold Avi_0299 PF01612 3'-5' exonuclease Avi_0299 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Avi_0300 PF01047 MarR family Avi_0301 PF01546 Peptidase family M20/M25/M40 Avi_0301 PF07687 Peptidase dimerisation domain Avi_0303 PF04073 Aminoacyl-tRNA editing domain Avi_0305 PF00905 Penicillin binding protein transpeptidase domain Avi_0305 PF00912 Transglycosylase Avi_0306 PF00012 Hsp70 protein Avi_0308 PF00226 DnaJ domain Avi_0308 PF00684 DnaJ central domain Avi_0308 PF01556 DnaJ C terminal domain Avi_0309 PF04102 SlyX Avi_0311 PF02463 RecF/RecN/SMC N terminal domain Avi_0312 PF00899 ThiF family Avi_0313 PF00583 Acetyltransferase (GNAT) family Avi_0314 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Avi_0314 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Avi_0315 PF06347 Bacterial SH3 domain Avi_0316 PF00294 pfkB family carbohydrate kinase Avi_0317 PF00563 EAL domain Avi_0317 PF00990 GGDEF domain Avi_0319 PF10070 Avi_0319 Avi_0320 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Avi_0320 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Avi_0321 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0321 PF03466 LysR substrate binding domain Avi_0323 PF07143 Hydroxyneurosporene synthase (CrtC) Avi_0326 PF00440 Bacterial regulatory proteins, tetR family Avi_0326 PF16859 Avi_0326 Avi_0327 PF00117 Glutamine amidotransferase class-I Avi_0327 PF00958 GMP synthase C terminal domain Avi_0327 PF02540 NAD synthase Avi_0328 PF01048 Phosphorylase superfamily Avi_0329 PF03061 Thioesterase superfamily Avi_0330 PF03073 TspO/MBR family Avi_0332 PF07433 Avi_0332 Avi_0333 PF09375 Imelysin Avi_0334 PF06537 Avi_0334 Avi_0335 PF09375 Imelysin Avi_0336 PF01189 NOL1/NOP2/sun family Avi_0337 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Avi_0339 PF01370 NAD dependent epimerase/dehydratase family Avi_0340 PF08331 Avi_0340 Avi_0340 PF13484 Avi_0340 Avi_0340 PF13646 HEAT repeats Avi_0341 PF13417 Glutathione S-transferase, N-terminal domain Avi_0341 PF14497 Glutathione S-transferase, C-terminal domain Avi_0342 PF02673 Avi_0342 Avi_0343 PF13460 NADH(P)-binding Avi_0345 PF07045 Protein of unknown function (DUF1330) Avi_0346 PF13229 Right handed beta helix region Avi_0347 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Avi_0348 PF00300 Histidine phosphatase superfamily (branch 1) Avi_0349 PF13649 Methyltransferase domain Avi_0351 PF00712 DNA polymerase III beta subunit, N-terminal domain Avi_0351 PF02767 DNA polymerase III beta subunit, central domain Avi_0351 PF02768 DNA polymerase III beta subunit, C-terminal domain Avi_0352 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Avi_0353 PF02021 Uncharacterised protein family UPF0102 Avi_0354 PF13416 Bacterial extracellular solute-binding protein Avi_0356 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0357 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0359 PF00005 ABC transporter Avi_0360 PF05899 Protein of unknown function (DUF861) Avi_0361 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Avi_0361 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Avi_0363 PF01078 Magnesium chelatase, subunit ChlI Avi_0363 PF13335 Avi_0363 Avi_0363 PF13541 Subunit ChlI of Mg-chelatase Avi_0364 PF00291 Pyridoxal-phosphate dependent enzyme Avi_0365 PF01810 Avi_0365 Avi_0366 PF01810 Avi_0366 Avi_0367 PF13527 Acetyltransferase (GNAT) domain Avi_0368 PF00692 dUTPase Avi_0369 PF00009 Elongation factor Tu GTP binding domain Avi_0369 PF03144 Elongation factor Tu domain 2 Avi_0369 PF16658 Avi_0369 Avi_0370 PF00982 Glycosyltransferase family 20 Avi_0371 PF02358 Trehalose-phosphatase Avi_0372 PF08543 Phosphomethylpyrimidine kinase Avi_0373 PF04828 Glutathione-dependent formaldehyde-activating enzyme Avi_0375 PF13350 Tyrosine phosphatase family Avi_0377 PF02678 Pirin Avi_0377 PF05726 Pirin C-terminal cupin domain Avi_0378 PF13230 Glutamine amidotransferases class-II Avi_0380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0380 PF03466 LysR substrate binding domain Avi_0381 PF02417 Avi_0381 Avi_0382 PF02417 Avi_0382 Avi_0383 PF02441 Flavoprotein Avi_0383 PF04127 DNA / pantothenate metabolism flavoprotein Avi_0384 PF00072 Response regulator receiver domain Avi_0384 PF07568 Avi_0384 Avi_0384 PF13581 Histidine kinase-like ATPase domain Avi_0385 PF00072 Response regulator receiver domain Avi_0386 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0386 PF05227 CHASE3 domain Avi_0387 PF03109 Avi_0387 Avi_0388 PF01209 ubiE/COQ5 methyltransferase family Avi_0389 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Avi_0389 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Avi_0390 PF01649 Ribosomal protein S20 Avi_0391 PF00308 Bacterial dnaA protein Avi_0391 PF08299 Bacterial dnaA protein helix-turn-helix Avi_0391 PF11638 DnaA N-terminal domain Avi_0392 PF00892 EamA-like transporter family Avi_0393 PF13649 Methyltransferase domain Avi_0394 PF04055 Radical SAM superfamily Avi_0394 PF06969 HemN C-terminal domain Avi_0395 PF01725 Ham1 family Avi_0396 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_0397 PF01138 3' exoribonuclease family, domain 1 Avi_0397 PF03725 3' exoribonuclease family, domain 2 Avi_0398 PF01628 HrcA protein C terminal domain Avi_0399 PF01025 GrpE Avi_0401 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Avi_0402 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Avi_0402 PF16321 Avi_0402 Avi_0404 PF04552 Sigma-54, DNA binding domain Avi_0404 PF04963 Sigma-54 factor, core binding domain Avi_0405 PF00005 ABC transporter Avi_0405 PF12399 Branched-chain amino acid ATP-binding cassette transporter Avi_0406 PF03968 OstA-like protein Avi_0408 PF06835 Lipopolysaccharide-assembly, LptC-related Avi_0409 PF00216 Bacterial DNA-binding protein Avi_0411 PF06305 Avi_0411 Avi_0413 PF10672 S-adenosylmethionine-dependent methyltransferase Avi_0414 PF00588 SpoU rRNA Methylase family Avi_0414 PF08032 RNA 2'-O ribose methyltransferase substrate binding Avi_0415 PF01252 Avi_0415 Avi_0417 PF00072 Response regulator receiver domain Avi_0417 PF00512 His Kinase A (phospho-acceptor) domain Avi_0417 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0418 PF13444 Acetyltransferase (GNAT) domain Avi_0422 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0422 PF03466 LysR substrate binding domain Avi_0423 PF00488 MutS domain V Avi_0423 PF01624 MutS domain I Avi_0423 PF05188 MutS domain II Avi_0423 PF05190 MutS family domain IV Avi_0423 PF05192 MutS domain III Avi_0424 PF01842 ACT domain Avi_0424 PF01966 HD domain Avi_0424 PF08335 GlnD PII-uridylyltransferase Avi_0425 PF03023 Avi_0425 Avi_0426 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_0427 PF00579 tRNA synthetases class I (W and Y) Avi_0429 PF00582 Universal stress protein family Avi_0430 PF01106 NifU-like domain Avi_0430 PF08712 Scaffold protein Nfu/NifU N terminal Avi_0432 PF00814 Glycoprotease family Avi_0433 PF00583 Acetyltransferase (GNAT) family Avi_0435 PF01475 Ferric uptake regulator family Avi_0436 PF01553 Acyltransferase Avi_0437 PF00919 Uncharacterized protein family UPF0004 Avi_0437 PF01938 TRAM domain Avi_0437 PF04055 Radical SAM superfamily Avi_0438 PF02562 PhoH-like protein Avi_0440 PF02130 Uncharacterized protein family UPF0054 Avi_0441 PF00571 CBS domain Avi_0441 PF03471 Transporter associated domain Avi_0442 PF00795 Carbon-nitrogen hydrolase Avi_0443 PF01381 Helix-turn-helix Avi_0444 PF00438 S-adenosylmethionine synthetase, N-terminal domain Avi_0444 PF02772 S-adenosylmethionine synthetase, central domain Avi_0444 PF02773 S-adenosylmethionine synthetase, C-terminal domain Avi_0445 PF02390 Putative methyltransferase Avi_0446 PF06620 Avi_0446 Avi_0447 PF00011 Hsp20/alpha crystallin family Avi_0448 PF01156 Inosine-uridine preferring nucleoside hydrolase Avi_0449 PF13419 Haloacid dehalogenase-like hydrolase Avi_0450 PF13202 EF hand Avi_0452 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_0452 PF00672 HAMP domain Avi_0452 PF12729 Avi_0452 Avi_0453 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0454 PF00825 Ribonuclease P Avi_0455 PF02096 60Kd inner membrane protein Avi_0455 PF14849 YidC periplasmic domain Avi_0456 PF01926 50S ribosome-binding GTPase Avi_0459 PF02469 Fasciclin domain Avi_0461 PF10099 Avi_0461 Avi_0463 PF04542 Sigma-70 region 2 Avi_0463 PF08281 Sigma-70, region 4 Avi_0464 PF00696 Amino acid kinase family Avi_0465 PF00294 pfkB family carbohydrate kinase Avi_0466 PF02646 Avi_0466 Avi_0470 PF00460 Flagella basal body rod protein Avi_0470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Avi_0470 PF07559 Flagellar basal body protein FlaE Avi_0471 PF03641 Possible lysine decarboxylase Avi_0473 PF00132 Bacterial transferase hexapeptide (six repeats) Avi_0473 PF14602 Hexapeptide repeat of succinyl-transferase Avi_0473 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Avi_0474 PF01546 Peptidase family M20/M25/M40 Avi_0474 PF07687 Peptidase dimerisation domain Avi_0476 PF13462 Thioredoxin Avi_0477 PF05161 MOFRL family Avi_0477 PF13660 Domain of unknown function (DUF4147) Avi_0478 PF01430 Hsp33 protein Avi_0479 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Avi_0479 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Avi_0481 PF00202 Aminotransferase class-III Avi_0484 PF07750 Avi_0484 Avi_0485 PF00072 Response regulator receiver domain Avi_0485 PF00486 Transcriptional regulatory protein, C terminal Avi_0488 PF01895 PhoU domain Avi_0489 PF00005 ABC transporter Avi_0491 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0491 PF11812 Avi_0491 Avi_0493 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0493 PF12501 Avi_0493 Avi_0495 PF12849 PBP superfamily domain Avi_0496 PF00512 His Kinase A (phospho-acceptor) domain Avi_0496 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0497 PF03976 Polyphosphate kinase 2 (PPK2) Avi_0500 PF03060 Nitronate monooxygenase Avi_0501 PF00005 ABC transporter Avi_0502 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0503 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0504 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Avi_0505 PF00392 Bacterial regulatory proteins, gntR family Avi_0505 PF07702 UTRA domain Avi_0506 PF00221 Aromatic amino acid lyase Avi_0508 PF00202 Aminotransferase class-III Avi_0509 PF06808 Avi_0509 Avi_0510 PF04290 Avi_0510 Avi_0511 PF03480 Bacterial extracellular solute-binding protein, family 7 Avi_0512 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0512 PF03466 LysR substrate binding domain Avi_0513 PF07690 Major Facilitator Superfamily Avi_0516 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Avi_0516 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Avi_0517 PF05990 Alpha/beta hydrolase of unknown function (DUF900) Avi_0518 PF05544 Proline racemase Avi_0519 PF00027 Cyclic nucleotide-binding domain Avi_0519 PF13545 Crp-like helix-turn-helix domain Avi_0520 PF00072 Response regulator receiver domain Avi_0521 PF00174 Oxidoreductase molybdopterin binding domain Avi_0522 PF00072 Response regulator receiver domain Avi_0522 PF00512 His Kinase A (phospho-acceptor) domain Avi_0522 PF01627 Hpt domain Avi_0522 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0523 PF00072 Response regulator receiver domain Avi_0523 PF01966 HD domain Avi_0524 PF01979 Amidohydrolase family Avi_0525 PF00990 GGDEF domain Avi_0528 PF00156 Phosphoribosyl transferase domain Avi_0530 PF00294 pfkB family carbohydrate kinase Avi_0533 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_0534 PF00342 Phosphoglucose isomerase Avi_0535 PF00501 AMP-binding enzyme Avi_0535 PF13193 AMP-binding enzyme C-terminal domain Avi_0536 PF04972 BON domain Avi_0537 PF00128 Alpha amylase, catalytic domain Avi_0537 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Avi_0538 PF00106 short chain dehydrogenase Avi_0540 PF01416 tRNA pseudouridine synthase Avi_0541 PF00551 Formyl transferase Avi_0541 PF02911 Formyl transferase, C-terminal domain Avi_0542 PF01327 Polypeptide deformylase Avi_0543 PF04379 Protein of unknown function (DUF525) Avi_0544 PF01053 Cys/Met metabolism PLP-dependent enzyme Avi_0545 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Avi_0546 PF13610 Avi_0546 Avi_0548 PF13586 Avi_0548 Avi_0549 PF13340 Avi_0549 Avi_0550 PF01323 DSBA-like thioredoxin domain Avi_0551 PF02230 Phospholipase/Carboxylesterase Avi_0554 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0554 PF03466 LysR substrate binding domain Avi_0555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0555 PF03466 LysR substrate binding domain Avi_0556 PF00043 Glutathione S-transferase, C-terminal domain Avi_0561 PF13610 Avi_0561 Avi_0563 PF13610 Avi_0563 Avi_0567 PF13437 HlyD family secretion protein Avi_0567 PF13533 Biotin-lipoyl like Avi_0570 PF00005 ABC transporter Avi_0570 PF00664 ABC transporter transmembrane region Avi_0570 PF03412 Peptidase C39 family Avi_0572 PF00685 Sulfotransferase domain Avi_0577 PF13632 Glycosyl transferase family group 2 Avi_0578 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_0583 PF00717 Peptidase S24-like Avi_0584 PF00072 Response regulator receiver domain Avi_0584 PF00196 Bacterial regulatory proteins, luxR family Avi_0585 PF06108 Protein of unknown function (DUF952) Avi_0586 PF01180 Dihydroorotate dehydrogenase Avi_0587 PF01554 MatE Avi_0588 PF00188 Cysteine-rich secretory protein family Avi_0591 PF13181 Tetratricopeptide repeat Avi_0591 PF13489 Methyltransferase domain Avi_0592 PF02588 Avi_0592 Avi_0593 PF03403 Platelet-activating factor acetylhydrolase, isoform II Avi_0596 PF07274 Avi_0596 Avi_0597 PF00378 Enoyl-CoA hydratase/isomerase family Avi_0597 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Avi_0597 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Avi_0598 PF00108 Thiolase, N-terminal domain Avi_0598 PF02803 Thiolase, C-terminal domain Avi_0599 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Avi_0599 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_0599 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_0599 PF12418 Avi_0599 Avi_0599 PF12806 Avi_0599 Avi_0601 PF01471 Putative peptidoglycan binding domain Avi_0601 PF08238 Sel1 repeat Avi_0602 PF01925 Avi_0602 Avi_0603 PF09608 Avi_0603 Avi_0605 PF00245 Alkaline phosphatase Avi_0607 PF00005 ABC transporter Avi_0608 PF02687 Avi_0608 Avi_0610 PF00990 GGDEF domain Avi_0610 PF07694 5TMR of 5TMR-LYT Avi_0610 PF08448 PAS fold Avi_0610 PF12860 Avi_0610 Avi_0612 PF02588 Avi_0612 Avi_0614 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_0615 PF00270 DEAD/DEAH box helicase Avi_0615 PF00271 Helicase conserved C-terminal domain Avi_0615 PF08494 Avi_0615 Avi_0616 PF00149 Calcineurin-like phosphoesterase Avi_0617 PF00069 Protein kinase domain Avi_0617 PF00582 Universal stress protein family Avi_0618 PF12850 Calcineurin-like phosphoesterase superfamily domain Avi_0619 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Avi_0620 PF00072 Response regulator receiver domain Avi_0620 PF00512 His Kinase A (phospho-acceptor) domain Avi_0620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0620 PF12860 Avi_0620 Avi_0622 PF01741 Large-conductance mechanosensitive channel, MscL Avi_0624 PF00155 Aminotransferase class I and II Avi_0626 PF00483 Nucleotidyl transferase Avi_0627 PF16363 Avi_0627 Avi_0628 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Avi_0629 PF08421 Putative zinc binding domain Avi_0629 PF08484 C-methyltransferase C-terminal domain Avi_0629 PF13489 Methyltransferase domain Avi_0631 PF13641 Glycosyltransferase like family 2 Avi_0632 PF04989 Cephalosporin hydroxylase Avi_0633 PF01370 NAD dependent epimerase/dehydratase family Avi_0636 PF03884 Domain of unknown function (DUF329) Avi_0638 PF02545 Maf-like protein Avi_0640 PF01176 Translation initiation factor 1A / IF-1 Avi_0641 PF01451 Low molecular weight phosphotyrosine protein phosphatase Avi_0642 PF06793 Avi_0642 Avi_0643 PF00815 Histidinol dehydrogenase Avi_0644 PF11164 Avi_0644 Avi_0645 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Avi_0648 PF13358 DDE superfamily endonuclease Avi_0648 PF13565 Avi_0648 Avi_0649 PF13289 Avi_0649 Avi_0650 PF01935 Domain of unknown function DUF87 Avi_0650 PF13619 Avi_0650 Avi_0652 PF00440 Bacterial regulatory proteins, tetR family Avi_0654 PF01361 Tautomerase enzyme Avi_0656 PF06983 3-demethylubiquinone-9 3-methyltransferase Avi_0658 PF00589 Phage integrase family Avi_0659 PF00440 Bacterial regulatory proteins, tetR family Avi_0662 PF03352 Methyladenine glycosylase Avi_0664 PF00753 Metallo-beta-lactamase superfamily Avi_0669 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0669 PF03466 LysR substrate binding domain Avi_0676 PF13173 AAA domain Avi_0676 PF13635 Avi_0676 Avi_0680 PF02534 Type IV secretory system Conjugative DNA transfer Avi_0682 PF03389 MobA/MobL family Avi_0682 PF13538 UvrD-like helicase C-terminal domain Avi_0682 PF13604 AAA domain Avi_0683 PF00665 Integrase core domain Avi_0684 PF01695 IstB-like ATP binding protein Avi_0686 PF01527 Transposase Avi_0687 PF05717 Avi_0687 Avi_0688 PF03050 Avi_0688 Avi_0688 PF13005 Avi_0688 Avi_0688 PF13007 Avi_0688 Avi_0688 PF13817 Avi_0688 Avi_0692 PF05717 Avi_0692 Avi_0693 PF03050 Avi_0693 Avi_0693 PF13005 Avi_0693 Avi_0693 PF13007 Avi_0693 Avi_0693 PF13817 Avi_0693 Avi_0697 PF00082 Subtilase family Avi_0702 PF09957 Avi_0702 Avi_0703 PF00149 Calcineurin-like phosphoesterase Avi_0704 PF07015 VirC1 protein Avi_0710 PF00589 Phage integrase family Avi_0712 PF00005 ABC transporter Avi_0716 PF00005 ABC transporter Avi_0716 PF12848 ABC transporter Avi_0717 PF01380 SIS domain Avi_0717 PF01418 Helix-turn-helix domain, rpiR family Avi_0718 PF00593 TonB dependent receptor Avi_0718 PF07715 TonB-dependent Receptor Plug Domain Avi_0721 PF01312 FlhB HrpN YscU SpaS Family Avi_0722 PF01706 FliG C-terminal domain Avi_0722 PF14841 FliG middle domain Avi_0722 PF14842 FliG N-terminal domain Avi_0724 PF01052 Surface presentation of antigens (SPOA) Avi_0726 PF01052 Surface presentation of antigens (SPOA) Avi_0728 PF01618 Avi_0728 Avi_0729 PF00460 Flagella basal body rod protein Avi_0729 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Avi_0731 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Avi_0735 PF00460 Flagella basal body rod protein Avi_0737 PF00460 Flagella basal body rod protein Avi_0737 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Avi_0738 PF02049 Avi_0738 Avi_0740 PF00460 Flagella basal body rod protein Avi_0740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Avi_0741 PF13144 SAF-like Avi_0742 PF02119 Avi_0742 Avi_0744 PF02107 Avi_0744 Avi_0745 PF03748 Avi_0745 Avi_0747 PF00813 Avi_0747 Avi_0748 PF00669 Bacterial flagellin N-terminal helical region Avi_0748 PF00700 Bacterial flagellin C-terminal helical region Avi_0749 PF00669 Bacterial flagellin N-terminal helical region Avi_0749 PF00700 Bacterial flagellin C-terminal helical region Avi_0750 PF00669 Bacterial flagellin N-terminal helical region Avi_0750 PF00700 Bacterial flagellin C-terminal helical region Avi_0751 PF00669 Bacterial flagellin N-terminal helical region Avi_0751 PF00700 Bacterial flagellin C-terminal helical region Avi_0752 PF00669 Bacterial flagellin N-terminal helical region Avi_0752 PF00700 Bacterial flagellin C-terminal helical region Avi_0756 PF00691 OmpA family Avi_0756 PF13677 Avi_0756 Avi_0760 PF02120 Flagellar hook-length control protein FliK Avi_0761 PF01464 Transglycosylase SLT domain Avi_0763 PF00486 Transcriptional regulatory protein, C terminal Avi_0764 PF00460 Flagella basal body rod protein Avi_0764 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Avi_0764 PF07559 Flagellar basal body protein FlaE Avi_0765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Avi_0766 PF00669 Bacterial flagellin N-terminal helical region Avi_0766 PF00700 Bacterial flagellin C-terminal helical region Avi_0767 PF07309 Avi_0767 Avi_0768 PF07378 Avi_0768 Avi_0769 PF03963 Avi_0769 Avi_0770 PF01313 Avi_0770 Avi_0772 PF00771 FHIPEP family Avi_0773 PF01311 Avi_0773 Avi_0776 PF10135 Avi_0776 Avi_0780 PF03808 Avi_0780 Avi_0782 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Avi_0782 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Avi_0783 PF00356 Bacterial regulatory proteins, lacI family Avi_0783 PF13377 Periplasmic binding protein-like domain Avi_0785 PF01547 Bacterial extracellular solute-binding protein Avi_0786 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0787 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0788 PF00128 Alpha amylase, catalytic domain Avi_0788 PF11941 Domain of unknown function (DUF3459) Avi_0789 PF00005 ABC transporter Avi_0789 PF08402 TOBE domain Avi_0791 PF10908 Avi_0791 Avi_0792 PF03390 Avi_0792 Avi_0793 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_0796 PF00920 Dehydratase family Avi_0797 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Avi_0798 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Avi_0798 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Avi_0799 PF01266 FAD dependent oxidoreductase Avi_0800 PF00120 Glutamine synthetase, catalytic domain Avi_0801 PF03486 HI0933-like protein Avi_0805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0805 PF03466 LysR substrate binding domain Avi_0806 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_0806 PF00672 HAMP domain Avi_0808 PF12710 haloacid dehalogenase-like hydrolase Avi_0811 PF00005 ABC transporter Avi_0811 PF00664 ABC transporter transmembrane region Avi_0812 PF07690 Major Facilitator Superfamily Avi_0816 PF00463 Isocitrate lyase family Avi_0818 PF01381 Helix-turn-helix Avi_0818 PF06114 Domain of unknown function (DUF955) Avi_0818 PF09856 Avi_0818 Avi_0819 PF13416 Bacterial extracellular solute-binding protein Avi_0820 PF00005 ABC transporter Avi_0820 PF08402 TOBE domain Avi_0823 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0825 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0826 PF13502 Avi_0826 Avi_0827 PF00512 His Kinase A (phospho-acceptor) domain Avi_0827 PF00989 PAS fold Avi_0827 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0827 PF13188 PAS domain Avi_0828 PF09361 Avi_0828 Avi_0829 PF04955 Avi_0829 Avi_0830 PF04955 Avi_0830 Avi_0833 PF06226 Avi_0833 Avi_0834 PF02566 OsmC-like protein Avi_0835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0835 PF03466 LysR substrate binding domain Avi_0836 PF00171 Aldehyde dehydrogenase family Avi_0838 PF02082 Transcriptional regulator Avi_0840 PF01202 Shikimate kinase Avi_0842 PF02611 CDP-diacylglycerol pyrophosphatase Avi_0844 PF01266 FAD dependent oxidoreductase Avi_0846 PF07470 Glycosyl Hydrolase Family 88 Avi_0847 PF07883 Cupin domain Avi_0849 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0850 PF00072 Response regulator receiver domain Avi_0850 PF00486 Transcriptional regulatory protein, C terminal Avi_0851 PF06039 Avi_0851 Avi_0853 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_0857 PF13730 Avi_0857 Avi_0858 PF04860 Phage portal protein Avi_0860 PF04586 Avi_0860 Avi_0861 PF05065 Phage capsid family Avi_0867 PF05135 Phage gp6-like head-tail connector protein Avi_0868 PF04883 Avi_0868 Avi_0868 PF11367 Protein of unknown function (DUF3168) Avi_0869 PF05521 Phage head-tail joining protein Avi_0871 PF05119 Avi_0871 Avi_0872 PF03354 Avi_0872 Avi_0880 PF03869 Arc-like DNA binding domain Avi_0886 PF00589 Phage integrase family Avi_0888 PF02541 Ppx/GppA phosphatase family Avi_0889 PF01728 FtsJ-like methyltransferase Avi_0890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_0891 PF00563 EAL domain Avi_0891 PF00990 GGDEF domain Avi_0893 PF00072 Response regulator receiver domain Avi_0893 PF00989 PAS fold Avi_0895 PF01119 DNA mismatch repair protein, C-terminal domain Avi_0895 PF08676 MutL C terminal dimerisation domain Avi_0895 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_0896 PF09866 Avi_0896 Avi_0897 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Avi_0898 PF13419 Haloacid dehalogenase-like hydrolase Avi_0899 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Avi_0900 PF13773 Domain of unknown function (DUF4170) Avi_0902 PF00459 Inositol monophosphatase family Avi_0903 PF01523 Putative modulator of DNA gyrase Avi_0904 PF00999 Sodium/hydrogen exchanger family Avi_0904 PF02254 TrkA-N domain Avi_0906 PF01734 Patatin-like phospholipase Avi_0907 PF03602 Conserved hypothetical protein 95 Avi_0910 PF00849 RNA pseudouridylate synthase Avi_0910 PF01479 S4 domain Avi_0911 PF14437 Avi_0911 Avi_0912 PF00753 Metallo-beta-lactamase superfamily Avi_0914 PF07690 Major Facilitator Superfamily Avi_0915 PF05239 PRC-barrel domain Avi_0916 PF08450 SMP-30/Gluconolaconase/LRE-like region Avi_0918 PF00196 Bacterial regulatory proteins, luxR family Avi_0918 PF03472 Autoinducer binding domain Avi_0919 PF13379 NMT1-like family Avi_0923 PF01883 Domain of unknown function DUF59 Avi_0923 PF10609 ParA/MinD ATPase like Avi_0926 PF01544 CorA-like Mg2+ transporter protein Avi_0927 PF02705 Avi_0927 Avi_0928 PF09527 Avi_0928 Avi_0929 PF00119 ATP synthase A chain Avi_0930 PF00137 ATP synthase subunit C Avi_0931 PF00430 ATP synthase B/B' CF(0) Avi_0934 PF00430 ATP synthase B/B' CF(0) Avi_0936 PF01351 Ribonuclease HII Avi_0937 PF04055 Radical SAM superfamily Avi_0940 PF00994 Probable molybdopterin binding domain Avi_0941 PF00288 GHMP kinases N terminal domain Avi_0941 PF08544 GHMP kinases C terminal Avi_0942 PF00515 Tetratricopeptide repeat Avi_0942 PF13414 TPR repeat Avi_0942 PF13432 Tetratricopeptide repeat Avi_0943 PF00348 Polyprenyl synthetase Avi_0944 PF09413 Domain of unknown function (DUF2007) Avi_0945 PF05175 Methyltransferase small domain Avi_0947 PF01343 Peptidase family S49 Avi_0950 PF07536 Avi_0950 Avi_0950 PF08448 PAS fold Avi_0951 PF02091 Glycyl-tRNA synthetase alpha subunit Avi_0955 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Avi_0956 PF02092 Avi_0956 Avi_0956 PF05746 DALR anticodon binding domain Avi_0957 PF04463 Avi_0957 Avi_0958 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_0958 PF17200 Avi_0958 Avi_0960 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Avi_0960 PF02843 Phosphoribosylglycinamide synthetase, C domain Avi_0960 PF02844 Phosphoribosylglycinamide synthetase, N domain Avi_0961 PF01757 Avi_0961 Avi_0962 PF00575 S1 RNA binding domain Avi_0962 PF09371 Tex-like protein N-terminal domain Avi_0962 PF12836 Helix-hairpin-helix motif Avi_0962 PF16921 Avi_0962 Avi_0963 PF02353 Mycolic acid cyclopropane synthetase Avi_0965 PF01040 UbiA prenyltransferase family Avi_0966 PF02583 Metal-sensitive transcriptional repressor Avi_0967 PF01545 Cation efflux family Avi_0969 PF06748 Protein of unknown function (DUF1217) Avi_0970 PF13531 Bacterial extracellular solute-binding protein Avi_0972 PF00528 Binding-protein-dependent transport system inner membrane component Avi_0973 PF00005 ABC transporter Avi_0973 PF03459 TOBE domain Avi_0974 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_0975 PF01565 FAD binding domain Avi_0975 PF02913 FAD linked oxidases, C-terminal domain Avi_0976 PF01300 Telomere recombination Avi_0976 PF03481 Putative GTP-binding controlling metal-binding Avi_0978 PF00990 GGDEF domain Avi_0980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_0981 PF00355 Rieske [2Fe-2S] domain Avi_0981 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Avi_0982 PF00111 2Fe-2S iron-sulfur cluster binding domain Avi_0982 PF00175 Oxidoreductase NAD-binding domain Avi_0982 PF00970 Oxidoreductase FAD-binding domain Avi_0984 PF07886 Avi_0984 Avi_0985 PF01544 CorA-like Mg2+ transporter protein Avi_0986 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Avi_0986 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_0986 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_0986 PF12806 Avi_0986 Avi_0987 PF00378 Enoyl-CoA hydratase/isomerase family Avi_0988 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_0988 PF00672 HAMP domain Avi_0988 PF02743 Cache domain Avi_0991 PF05958 tRNA (Uracil-5-)-methyltransferase Avi_0992 PF01479 S4 domain Avi_0992 PF01728 FtsJ-like methyltransferase Avi_0994 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_0994 PF00672 HAMP domain Avi_0994 PF05227 CHASE3 domain Avi_0996 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_0996 PF00672 HAMP domain Avi_0996 PF05227 CHASE3 domain Avi_0997 PF02779 Transketolase, pyrimidine binding domain Avi_0997 PF02780 Transketolase, C-terminal domain Avi_0997 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Avi_0998 PF02609 Exonuclease VII small subunit Avi_0999 PF00850 Histone deacetylase domain Avi_1002 PF03061 Thioesterase superfamily Avi_1003 PF01636 Phosphotransferase enzyme family Avi_1004 PF02632 BioY family Avi_1006 PF02361 Cobalt transport protein Avi_1007 PF00005 ABC transporter Avi_1009 PF00491 Arginase family Avi_1010 PF06224 Avi_1010 Avi_1011 PF07883 Cupin domain Avi_1013 PF05014 Nucleoside 2-deoxyribosyltransferase Avi_1014 PF00925 GTP cyclohydrolase II Avi_1014 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Avi_1015 PF01264 Chorismate synthase Avi_1017 PF00563 EAL domain Avi_1017 PF00990 GGDEF domain Avi_1017 PF08447 PAS fold Avi_1019 PF07076 Avi_1019 Avi_1020 PF00300 Histidine phosphatase superfamily (branch 1) Avi_1021 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_1023 PF00226 DnaJ domain Avi_1023 PF01556 DnaJ C terminal domain Avi_1024 PF16998 Avi_1024 Avi_1026 PF01243 Pyridoxamine 5'-phosphate oxidase Avi_1026 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Avi_1027 PF01522 Polysaccharide deacetylase Avi_1028 PF07690 Major Facilitator Superfamily Avi_1029 PF13411 MerR HTH family regulatory protein Avi_1030 PF00768 D-alanyl-D-alanine carboxypeptidase Avi_1030 PF05036 Sporulation related domain Avi_1032 PF03819 MazG nucleotide pyrophosphohydrolase domain Avi_1034 PF13419 Haloacid dehalogenase-like hydrolase Avi_1035 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_1036 PF01523 Putative modulator of DNA gyrase Avi_1038 PF06776 Invasion associated locus B (IalB) protein Avi_1039 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Avi_1039 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Avi_1041 PF00115 Cytochrome C and Quinol oxidase polypeptide I Avi_1042 PF01040 UbiA prenyltransferase family Avi_1044 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 Avi_1045 PF00510 Cytochrome c oxidase subunit III Avi_1046 PF06170 Avi_1046 Avi_1048 PF02104 Avi_1048 Avi_1051 PF06993 Avi_1051 Avi_1052 PF02401 LytB protein Avi_1053 PF00905 Penicillin binding protein transpeptidase domain Avi_1054 PF01266 FAD dependent oxidoreductase Avi_1055 PF01810 Avi_1055 Avi_1056 PF00155 Aminotransferase class I and II Avi_1057 PF13772 AIG2-like family Avi_1059 PF01636 Phosphotransferase enzyme family Avi_1060 PF00075 RNase H Avi_1061 PF07876 Stress responsive A/B Barrel Domain Avi_1062 PF01297 Periplasmic solute binding protein family Avi_1063 PF00950 Avi_1063 Avi_1065 PF00005 ABC transporter Avi_1067 PF08534 Redoxin Avi_1068 PF11412 Disulphide bond corrector protein DsbC Avi_1069 PF02622 Uncharacterized ACR, COG1678 Avi_1070 PF00892 EamA-like transporter family Avi_1071 PF12840 Helix-turn-helix domain Avi_1072 PF00563 EAL domain Avi_1072 PF00990 GGDEF domain Avi_1072 PF07696 7TMR-DISM extracellular 2 Avi_1072 PF08447 PAS fold Avi_1073 PF13302 Acetyltransferase (GNAT) domain Avi_1074 PF00675 Insulinase (Peptidase family M16) Avi_1074 PF05193 Peptidase M16 inactive domain Avi_1075 PF00291 Pyridoxal-phosphate dependent enzyme Avi_1075 PF14821 Threonine synthase N terminus Avi_1079 PF00781 Diacylglycerol kinase catalytic domain Avi_1080 PF13419 Haloacid dehalogenase-like hydrolase Avi_1081 PF00392 Bacterial regulatory proteins, gntR family Avi_1081 PF07729 FCD domain Avi_1083 PF06935 Avi_1083 Avi_1084 PF01555 DNA methylase Avi_1086 PF13844 Glycosyl transferase family 41 Avi_1087 PF01243 Pyridoxamine 5'-phosphate oxidase Avi_1088 PF13844 Glycosyl transferase family 41 Avi_1089 PF03992 Antibiotic biosynthesis monooxygenase Avi_1090 PF13419 Haloacid dehalogenase-like hydrolase Avi_1091 PF05258 Avi_1091 Avi_1092 PF00730 HhH-GPD superfamily base excision DNA repair protein Avi_1092 PF14815 NUDIX domain Avi_1093 PF13462 Thioredoxin Avi_1095 PF02463 RecF/RecN/SMC N terminal domain Avi_1098 PF08816 Inhibitor of vertebrate lysozyme (Ivy) Avi_1099 PF07690 Major Facilitator Superfamily Avi_1100 PF06347 Bacterial SH3 domain Avi_1102 PF00391 PEP-utilising enzyme, mobile domain Avi_1102 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Avi_1102 PF02896 PEP-utilising enzyme, TIM barrel domain Avi_1104 PF00092 von Willebrand factor type A domain Avi_1104 PF13400 Avi_1104 Avi_1106 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_1106 PF03466 LysR substrate binding domain Avi_1108 PF10014 2OG-Fe dioxygenase Avi_1110 PF01810 Avi_1110 Avi_1112 PF12710 haloacid dehalogenase-like hydrolase Avi_1113 PF13437 HlyD family secretion protein Avi_1113 PF13533 Biotin-lipoyl like Avi_1114 PF00005 ABC transporter Avi_1114 PF00664 ABC transporter transmembrane region Avi_1117 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_1117 PF00672 HAMP domain Avi_1118 PF01507 Phosphoadenosine phosphosulfate reductase family Avi_1120 PF01507 Phosphoadenosine phosphosulfate reductase family Avi_1122 PF00009 Elongation factor Tu GTP binding domain Avi_1123 PF00795 Carbon-nitrogen hydrolase Avi_1125 PF00356 Bacterial regulatory proteins, lacI family Avi_1125 PF13377 Periplasmic binding protein-like domain Avi_1126 PF07386 Avi_1126 Avi_1127 PF00753 Metallo-beta-lactamase superfamily Avi_1130 PF01965 DJ-1/PfpI family Avi_1135 PF07366 SnoaL-like polyketide cyclase Avi_1136 PF00654 Voltage gated chloride channel Avi_1138 PF00669 Bacterial flagellin N-terminal helical region Avi_1138 PF00700 Bacterial flagellin C-terminal helical region Avi_1139 PF00654 Voltage gated chloride channel Avi_1140 PF09924 Uncharacterized conserved protein (DUF2156) Avi_1141 PF01402 Ribbon-helix-helix protein, copG family Avi_1142 PF01850 PIN domain Avi_1144 PF00732 GMC oxidoreductase Avi_1144 PF05199 GMC oxidoreductase Avi_1147 PF00171 Aldehyde dehydrogenase family Avi_1148 PF00043 Glutathione S-transferase, C-terminal domain Avi_1148 PF02798 Glutathione S-transferase, N-terminal domain Avi_1150 PF00884 Sulfatase Avi_1150 PF12411 Avi_1150 Avi_1151 PF00440 Bacterial regulatory proteins, tetR family Avi_1151 PF13977 Bacterial transcriptional repressor Avi_1154 PF00563 EAL domain Avi_1154 PF00571 CBS domain Avi_1154 PF00990 GGDEF domain Avi_1156 PF00107 Zinc-binding dehydrogenase Avi_1156 PF08240 Alcohol dehydrogenase GroES-like domain Avi_1157 PF13340 Avi_1157 Avi_1158 PF13586 Avi_1158 Avi_1159 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_1160 PF13844 Glycosyl transferase family 41 Avi_1161 PF13844 Glycosyl transferase family 41 Avi_1162 PF13844 Glycosyl transferase family 41 Avi_1163 PF06089 Avi_1163 Avi_1164 PF00455 Avi_1164 Avi_1164 PF08220 DeoR-like helix-turn-helix domain Avi_1167 PF00884 Sulfatase Avi_1167 PF08019 Avi_1167 Avi_1168 PF13523 Acetyltransferase (GNAT) domain Avi_1170 PF00043 Glutathione S-transferase, C-terminal domain Avi_1170 PF13417 Glutathione S-transferase, N-terminal domain Avi_1172 PF09860 Avi_1172 Avi_1173 PF01019 Gamma-glutamyltranspeptidase Avi_1175 PF12802 MarR family Avi_1177 PF07690 Major Facilitator Superfamily Avi_1179 PF00881 Nitroreductase family Avi_1180 PF00565 Staphylococcal nuclease homologue Avi_1186 PF03734 L,D-transpeptidase catalytic domain Avi_1187 PF03734 L,D-transpeptidase catalytic domain Avi_1189 PF01047 MarR family Avi_1190 PF02566 OsmC-like protein Avi_1192 PF07690 Major Facilitator Superfamily Avi_1193 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_1193 PF07568 Avi_1193 Avi_1193 PF08448 PAS fold Avi_1195 PF00072 Response regulator receiver domain Avi_1197 PF13238 AAA domain Avi_1199 PF00156 Phosphoribosyl transferase domain Avi_1200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_1200 PF00672 HAMP domain Avi_1200 PF02743 Cache domain Avi_1201 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_1201 PF00672 HAMP domain Avi_1201 PF02743 Cache domain Avi_1202 PF11075 Avi_1202 Avi_1204 PF05872 Avi_1204 Avi_1205 PF00999 Sodium/hydrogen exchanger family Avi_1206 PF00224 Pyruvate kinase, barrel domain Avi_1206 PF02887 Pyruvate kinase, alpha/beta domain Avi_1207 PF03547 Avi_1207 Avi_1208 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_1208 PF00672 HAMP domain Avi_1208 PF12729 Avi_1208 Avi_1209 PF02673 Avi_1209 Avi_1210 PF00005 ABC transporter Avi_1211 PF02653 Avi_1211 Avi_1212 PF13407 Periplasmic binding protein domain Avi_1214 PF00480 ROK family Avi_1214 PF01047 MarR family Avi_1218 PF00005 ABC transporter Avi_1219 PF01032 FecCD transport family Avi_1220 PF01497 Periplasmic binding protein Avi_1221 PF01497 Periplasmic binding protein Avi_1222 PF08241 Methyltransferase domain Avi_1223 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_1223 PF03466 LysR substrate binding domain Avi_1224 PF07690 Major Facilitator Superfamily Avi_1225 PF07993 Male sterility protein Avi_1227 PF00583 Acetyltransferase (GNAT) family Avi_1231 PF06296 Avi_1231 Avi_1234 PF00034 Cytochrome c Avi_1236 PF01322 Cytochrome C' Avi_1238 PF00149 Calcineurin-like phosphoesterase Avi_1239 PF13302 Acetyltransferase (GNAT) domain Avi_1240 PF02525 Flavodoxin-like fold Avi_1242 PF01638 HxlR-like helix-turn-helix Avi_1244 PF00583 Acetyltransferase (GNAT) family Avi_1245 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Avi_1245 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Avi_1247 PF03692 Avi_1247 Avi_1248 PF12158 Avi_1248 Avi_1249 PF00990 GGDEF domain Avi_1251 PF01063 Aminotransferase class IV Avi_1253 PF07731 Multicopper oxidase Avi_1253 PF07732 Multicopper oxidase Avi_1256 PF06903 Avi_1256 Avi_1258 PF00326 Prolyl oligopeptidase family Avi_1258 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Avi_1259 PF06059 Avi_1259 Avi_1260 PF01594 Avi_1260 Avi_1261 PF12831 FAD dependent oxidoreductase Avi_1263 PF01522 Polysaccharide deacetylase Avi_1264 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_1265 PF00582 Universal stress protein family Avi_1266 PF01258 Prokaryotic dksA/traR C4-type zinc finger Avi_1267 PF01124 MAPEG family Avi_1271 PF03006 Avi_1271 Avi_1273 PF00027 Cyclic nucleotide-binding domain Avi_1273 PF13545 Crp-like helix-turn-helix domain Avi_1274 PF13420 Acetyltransferase (GNAT) domain Avi_1276 PF12833 Helix-turn-helix domain Avi_1277 PF05443 ROS/MUCR transcriptional regulator protein Avi_1278 PF03334 Avi_1278 Avi_1279 PF04066 Avi_1279 Avi_1281 PF01899 Avi_1281 Avi_1282 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Avi_1283 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Avi_1284 PF04039 Avi_1284 Avi_1285 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Avi_1285 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Avi_1285 PF13244 Avi_1285 Avi_1286 PF01641 SelR domain Avi_1287 PF08299 Bacterial dnaA protein helix-turn-helix Avi_1295 PF16576 Avi_1295 Avi_1296 PF00005 ABC transporter Avi_1296 PF02687 Avi_1296 Avi_1296 PF12704 MacB-like periplasmic core domain Avi_1297 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Avi_1297 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Avi_1298 PF00440 Bacterial regulatory proteins, tetR family Avi_1302 PF02657 Fe-S metabolism associated domain Avi_1303 PF17264 Avi_1303 Avi_1305 PF00512 His Kinase A (phospho-acceptor) domain Avi_1305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_1306 PF01471 Putative peptidoglycan binding domain Avi_1307 PF05990 Alpha/beta hydrolase of unknown function (DUF900) Avi_1308 PF00873 AcrB/AcrD/AcrF family Avi_1309 PF16576 Avi_1309 Avi_1311 PF16576 Avi_1311 Avi_1313 PF00440 Bacterial regulatory proteins, tetR family Avi_1314 PF07372 Protein of unknown function (DUF1491) Avi_1315 PF10098 Avi_1315 Avi_1319 PF11089 Avi_1319 Avi_1322 PF06742 Protein of unknown function (DUF1214) Avi_1323 PF00905 Penicillin binding protein transpeptidase domain Avi_1323 PF00912 Transglycosylase Avi_1324 PF03692 Avi_1324 Avi_1328 PF00376 MerR family regulatory protein Avi_1328 PF09278 MerR, DNA binding Avi_1330 PF03237 Terminase-like family Avi_1330 PF17289 Avi_1330 Avi_1332 PF00182 Chitinase class I Avi_1334 PF04860 Phage portal protein Avi_1337 PF04586 Avi_1337 Avi_1338 PF05065 Phage capsid family Avi_1339 PF05135 Phage gp6-like head-tail connector protein Avi_1340 PF05521 Phage head-tail joining protein Avi_1343 PF11367 Protein of unknown function (DUF3168) Avi_1344 PF07690 Major Facilitator Superfamily Avi_1345 PF06199 Avi_1345 Avi_1346 PF11836 Avi_1346 Avi_1347 PF09550 Avi_1347 Avi_1350 PF09343 Avi_1350 Avi_1351 PF09356 Avi_1351 Avi_1351 PF09931 Avi_1351 Avi_1354 PF13547 Avi_1354 Avi_1354 PF13550 Avi_1354 Avi_1358 PF00072 Response regulator receiver domain Avi_1358 PF00486 Transcriptional regulatory protein, C terminal Avi_1359 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_1362 PF14559 Tetratricopeptide repeat Avi_1363 PF03100 CcmE Avi_1364 PF01578 Avi_1364 Avi_1364 PF16327 Avi_1364 Avi_1365 PF03918 Cytochrome C biogenesis protein Avi_1368 PF13180 PDZ domain Avi_1368 PF13365 Trypsin-like peptidase domain Avi_1370 PF00072 Response regulator receiver domain Avi_1370 PF00486 Transcriptional regulatory protein, C terminal Avi_1371 PF00512 His Kinase A (phospho-acceptor) domain Avi_1371 PF00672 HAMP domain Avi_1371 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_1372 PF03710 Glutamate-ammonia ligase adenylyltransferase Avi_1372 PF08335 GlnD PII-uridylyltransferase Avi_1373 PF00512 His Kinase A (phospho-acceptor) domain Avi_1373 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_1373 PF08447 PAS fold Avi_1373 PF12860 Avi_1373 Avi_1374 PF01433 Peptidase family M1 Avi_1374 PF11940 Domain of unknown function (DUF3458) Avi_1374 PF17432 Avi_1374 Avi_1377 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_1379 PF00892 EamA-like transporter family Avi_1380 PF07690 Major Facilitator Superfamily Avi_1384 PF03167 Uracil DNA glycosylase superfamily Avi_1385 PF00012 Hsp70 protein Avi_1388 PF00873 AcrB/AcrD/AcrF family Avi_1389 PF16576 Avi_1389 Avi_1391 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_1392 PF01946 Thi4 family Avi_1392 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase Avi_1393 PF01063 Aminotransferase class IV Avi_1395 PF02353 Mycolic acid cyclopropane synthetase Avi_1398 PF00571 CBS domain Avi_1398 PF01769 Divalent cation transporter Avi_1398 PF03448 MgtE intracellular N domain Avi_1399 PF07690 Major Facilitator Superfamily Avi_1401 PF00781 Diacylglycerol kinase catalytic domain Avi_1402 PF00005 ABC transporter Avi_1402 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_1403 PF00528 Binding-protein-dependent transport system inner membrane component Avi_1403 PF12911 Avi_1403 Avi_1404 PF00528 Binding-protein-dependent transport system inner membrane component Avi_1405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_1406 PF00120 Glutamine synthetase, catalytic domain Avi_1407 PF00202 Aminotransferase class-III Avi_1408 PF09981 Uncharacterized protein conserved in bacteria (DUF2218) Avi_1409 PF03551 Transcriptional regulator PadR-like family Avi_1410 PF13231 Avi_1410 Avi_1411 PF00535 Glycosyl transferase family 2 Avi_1413 PF03706 Avi_1413 Avi_1414 PF01048 Phosphorylase superfamily Avi_1414 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus Avi_1416 PF00043 Glutathione S-transferase, C-terminal domain Avi_1416 PF02798 Glutathione S-transferase, N-terminal domain Avi_1419 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) Avi_1423 PF00155 Aminotransferase class I and II Avi_1426 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_1426 PF14759 Reductase C-terminal Avi_1427 PF02530 Avi_1427 Avi_1428 PF02530 Avi_1428 Avi_1430 PF12697 Alpha/beta hydrolase family Avi_1431 PF01464 Transglycosylase SLT domain Avi_1432 PF00701 Dihydrodipicolinate synthetase family Avi_1434 PF01668 SmpB protein Avi_1438 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Avi_1438 PF02805 Metal binding domain of Ada Avi_1438 PF12833 Helix-turn-helix domain Avi_1439 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_1439 PF11563 Protoglobin Avi_1440 PF01936 NYN domain Avi_1441 PF01192 RNA polymerase Rpb6 Avi_1443 PF02824 TGS domain Avi_1443 PF04607 Region found in RelA / SpoT proteins Avi_1443 PF13291 ACT domain Avi_1443 PF13328 HD domain Avi_1445 PF12086 Avi_1445 Avi_1447 PF00717 Peptidase S24-like Avi_1447 PF10502 Signal peptidase, peptidase S26 Avi_1449 PF00035 Double-stranded RNA binding motif Avi_1449 PF14622 Ribonuclease-III-like Avi_1450 PF01926 50S ribosome-binding GTPase Avi_1450 PF07650 KH domain Avi_1451 PF05145 Avi_1451 Avi_1452 PF02565 Recombination protein O C terminal Avi_1452 PF11967 Recombination protein O N terminal Avi_1456 PF03473 MOSC domain Avi_1456 PF03476 MOSC N-terminal beta barrel domain Avi_1457 PF01966 HD domain Avi_1459 PF13202 EF hand Avi_1461 PF13023 HD domain Avi_1462 PF01571 Aminomethyltransferase folate-binding domain Avi_1462 PF08669 Glycine cleavage T-protein C-terminal barrel domain Avi_1465 PF09539 Avi_1465 Avi_1466 PF00293 NUDIX domain Avi_1467 PF02586 Uncharacterised ACR, COG2135 Avi_1470 PF01066 CDP-alcohol phosphatidyltransferase Avi_1470 PF08009 Avi_1470 Avi_1471 PF02666 Avi_1471 Avi_1472 PF00005 ABC transporter Avi_1472 PF00664 ABC transporter transmembrane region Avi_1474 PF01476 LysM domain Avi_1475 PF03641 Possible lysine decarboxylase Avi_1476 PF00892 EamA-like transporter family Avi_1477 PF00682 HMGL-like Avi_1477 PF08502 LeuA allosteric (dimerisation) domain Avi_1479 PF00561 alpha/beta hydrolase fold Avi_1480 PF04828 Glutathione-dependent formaldehyde-activating enzyme Avi_1482 PF04828 Glutathione-dependent formaldehyde-activating enzyme Avi_1483 PF04828 Glutathione-dependent formaldehyde-activating enzyme Avi_1484 PF01850 PIN domain Avi_1485 PF04014 Antidote-toxin recognition MazE Avi_1486 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_1487 PF01406 tRNA synthetases class I (C) catalytic domain Avi_1487 PF09190 DALR domain Avi_1489 PF00295 Glycosyl hydrolases family 28 Avi_1490 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Avi_1491 PF16363 Avi_1491 Avi_1493 PF04321 RmlD substrate binding domain Avi_1494 PF00483 Nucleotidyl transferase Avi_1495 PF00535 Glycosyl transferase family 2 Avi_1497 PF00106 short chain dehydrogenase Avi_1499 PF00156 Phosphoribosyl transferase domain Avi_1499 PF13537 Glutamine amidotransferase domain Avi_1500 PF02674 Avi_1500 Avi_1502 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Avi_1502 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Avi_1502 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Avi_1503 PF01370 NAD dependent epimerase/dehydratase family Avi_1505 PF01370 NAD dependent epimerase/dehydratase family Avi_1507 PF13481 AAA domain Avi_1507 PF13541 Subunit ChlI of Mg-chelatase Avi_1508 PF00842 Alanine racemase, C-terminal domain Avi_1508 PF01168 Alanine racemase, N-terminal domain Avi_1509 PF02311 AraC-like ligand binding domain Avi_1509 PF12833 Helix-turn-helix domain Avi_1510 PF00528 Binding-protein-dependent transport system inner membrane component Avi_1512 PF00528 Binding-protein-dependent transport system inner membrane component Avi_1513 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_1515 PF00772 DnaB-like helicase N terminal domain Avi_1515 PF03796 DnaB-like helicase C terminal domain Avi_1516 PF01281 Ribosomal protein L9, N-terminal domain Avi_1516 PF03948 Ribosomal protein L9, C-terminal domain Avi_1518 PF09991 Avi_1518 Avi_1519 PF01084 Ribosomal protein S18 Avi_1520 PF01250 Ribosomal protein S6 Avi_1523 PF01447 Thermolysin metallopeptidase, catalytic domain Avi_1523 PF02868 Thermolysin metallopeptidase, alpha-helical domain Avi_1526 PF00248 Aldo/keto reductase family Avi_1527 PF00698 Acyl transferase domain Avi_1528 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_1530 PF00550 Phosphopantetheine attachment site Avi_1531 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_1531 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_1532 PF02618 YceG-like family Avi_1534 PF03755 Avi_1534 Avi_1534 PF08340 Avi_1534 Avi_1535 PF00625 Guanylate kinase Avi_1536 PF13649 Methyltransferase domain Avi_1537 PF00398 Ribosomal RNA adenine dimethylase Avi_1538 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Avi_1539 PF13624 SurA N-terminal domain Avi_1541 PF04453 Organic solvent tolerance protein Avi_1542 PF03739 Avi_1542 Avi_1543 PF03739 Avi_1543 Avi_1544 PF01569 PAP2 superfamily Avi_1545 PF00883 Cytosol aminopeptidase family, catalytic domain Avi_1545 PF02789 Cytosol aminopeptidase family, N-terminal domain Avi_1546 PF04364 DNA polymerase III chi subunit, HolC Avi_1547 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_1547 PF00672 HAMP domain Avi_1547 PF12729 Avi_1547 Avi_1549 PF00005 ABC transporter Avi_1549 PF12848 ABC transporter Avi_1549 PF16326 Avi_1549 Avi_1550 PF13410 Glutathione S-transferase, C-terminal domain Avi_1550 PF13417 Glutathione S-transferase, N-terminal domain Avi_1552 PF00334 Nucleoside diphosphate kinase Avi_1553 PF02391 MoaE protein Avi_1555 PF02597 ThiS family Avi_1556 PF01066 CDP-alcohol phosphatidyltransferase Avi_1558 PF01541 GIY-YIG catalytic domain Avi_1558 PF02151 UvrB/uvrC motif Avi_1558 PF08459 UvrC Helix-hairpin-helix N-terminal Avi_1558 PF12826 Helix-hairpin-helix motif Avi_1559 PF00106 short chain dehydrogenase Avi_1561 PF13505 Outer membrane protein beta-barrel domain Avi_1562 PF13417 Glutathione S-transferase, N-terminal domain Avi_1564 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ Avi_1565 PF00384 Molybdopterin oxidoreductase Avi_1565 PF01568 Molydopterin dinucleotide binding domain Avi_1565 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Avi_1566 PF00293 NUDIX domain Avi_1568 PF00753 Metallo-beta-lactamase superfamily Avi_1568 PF04273 Putative phosphatase (DUF442) Avi_1569 PF12840 Helix-turn-helix domain Avi_1570 PF04143 Avi_1570 Avi_1573 PF01925 Avi_1573 Avi_1574 PF00551 Formyl transferase Avi_1575 PF00586 AIR synthase related protein, N-terminal domain Avi_1575 PF02769 AIR synthase related protein, C-terminal domain Avi_1577 PF01594 Avi_1577 Avi_1578 PF00308 Bacterial dnaA protein Avi_1580 PF02503 Polyphosphate kinase middle domain Avi_1580 PF13089 Polyphosphate kinase N-terminal domain Avi_1580 PF13090 Polyphosphate kinase C-terminal domain Avi_1582 PF02541 Ppx/GppA phosphatase family Avi_1583 PF01325 Iron dependent repressor, N-terminal DNA binding domain Avi_1583 PF02742 Iron dependent repressor, metal binding and dimerisation domain Avi_1584 PF01566 Avi_1584 Avi_1585 PF11199 Avi_1585 Avi_1586 PF09243 Avi_1586 Avi_1587 PF00583 Acetyltransferase (GNAT) family Avi_1588 PF00570 HRDC domain Avi_1588 PF01612 3'-5' exonuclease Avi_1589 PF07731 Multicopper oxidase Avi_1589 PF07732 Multicopper oxidase Avi_1591 PF07690 Major Facilitator Superfamily Avi_1592 PF00152 tRNA synthetases class II (D, K and N) Avi_1592 PF01336 OB-fold nucleic acid binding domain Avi_1592 PF02938 GAD domain Avi_1593 PF13515 Avi_1593 Avi_1595 PF00521 DNA gyrase/topoisomerase IV, subunit A Avi_1595 PF03989 DNA gyrase C-terminal domain, beta-propeller Avi_1597 PF00563 EAL domain Avi_1597 PF00990 GGDEF domain Avi_1600 PF00563 EAL domain Avi_1600 PF00990 GGDEF domain Avi_1600 PF13185 GAF domain Avi_1601 PF04376 Avi_1601 Avi_1601 PF04377 Avi_1601 Avi_1602 PF06271 Avi_1602 Avi_1603 PF00490 Delta-aminolevulinic acid dehydratase Avi_1606 PF13463 Winged helix DNA-binding domain Avi_1609 PF01471 Putative peptidoglycan binding domain Avi_1609 PF03734 L,D-transpeptidase catalytic domain Avi_1610 PF00464 Serine hydroxymethyltransferase Avi_1612 PF03477 ATP cone domain Avi_1613 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Avi_1613 PF01872 RibD C-terminal domain Avi_1614 PF00677 Lumazine binding domain Avi_1618 PF00885 6,7-dimethyl-8-ribityllumazine synthase Avi_1620 PF01029 NusB family Avi_1621 PF07690 Major Facilitator Superfamily Avi_1622 PF03030 Inorganic H+ pyrophosphatase Avi_1624 PF04355 SmpA / OmlA family Avi_1626 PF03981 Avi_1626 Avi_1627 PF02620 Avi_1627 Avi_1628 PF02504 Fatty acid synthesis protein Avi_1630 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Avi_1630 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Avi_1631 PF00216 Bacterial DNA-binding protein Avi_1633 PF13411 MerR HTH family regulatory protein Avi_1634 PF06169 Protein of unknown function (DUF982) Avi_1635 PF05239 PRC-barrel domain Avi_1636 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_1636 PF07568 Avi_1636 Avi_1636 PF08448 PAS fold Avi_1637 PF00589 Phage integrase family Avi_1638 PF01695 IstB-like ATP binding protein Avi_1639 PF00665 Integrase core domain Avi_1641 PF00082 Subtilase family Avi_1642 PF00004 ATPase family associated with various cellular activities (AAA) Avi_1644 PF01965 DJ-1/PfpI family Avi_1645 PF01965 DJ-1/PfpI family Avi_1645 PF12833 Helix-turn-helix domain Avi_1646 PF05954 Phage late control gene D protein (GPD) Avi_1647 PF13503 Avi_1647 Avi_1650 PF05488 PAAR motif Avi_1654 PF00753 Metallo-beta-lactamase superfamily Avi_1655 PF12833 Helix-turn-helix domain Avi_1658 PF10503 Esterase PHB depolymerase Avi_1661 PF00534 Glycosyl transferases group 1 Avi_1661 PF13579 Glycosyl transferase 4-like domain Avi_1662 PF04932 Avi_1662 Avi_1663 PF02397 Avi_1663 Avi_1663 PF13727 CoA-binding domain Avi_1664 PF00534 Glycosyl transferases group 1 Avi_1664 PF13439 Glycosyltransferase Family 4 Avi_1665 PF02563 Polysaccharide biosynthesis/export protein Avi_1665 PF10531 SLBB domain Avi_1666 PF02706 Chain length determinant protein Avi_1667 PF13480 Acetyltransferase (GNAT) domain Avi_1668 PF11003 Avi_1668 Avi_1670 PF02628 Avi_1670 Avi_1671 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Avi_1673 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase Avi_1674 PF01118 Semialdehyde dehydrogenase, NAD binding domain Avi_1675 PF00491 Arginase family Avi_1679 PF03992 Antibiotic biosynthesis monooxygenase Avi_1681 PF00380 Ribosomal protein S9/S16 Avi_1682 PF00572 Ribosomal protein L13 Avi_1684 PF13380 CoA binding domain Avi_1687 PF13380 CoA binding domain Avi_1690 PF01053 Cys/Met metabolism PLP-dependent enzyme Avi_1691 PF00149 Calcineurin-like phosphoesterase Avi_1693 PF05899 Protein of unknown function (DUF861) Avi_1694 PF00067 Cytochrome P450 Avi_1695 PF00990 GGDEF domain Avi_1696 PF00574 Clp protease Avi_1698 PF06689 ClpX C4-type zinc finger Avi_1698 PF07724 AAA domain (Cdc48 subfamily) Avi_1698 PF10431 C-terminal, D2-small domain, of ClpB protein Avi_1700 PF00004 ATPase family associated with various cellular activities (AAA) Avi_1700 PF02190 ATP-dependent protease La (LON) domain Avi_1700 PF05362 Lon protease (S16) C-terminal proteolytic domain Avi_1701 PF00216 Bacterial DNA-binding protein Avi_1702 PF13347 MFS/sugar transport protein Avi_1703 PF01047 MarR family Avi_1704 PF00501 AMP-binding enzyme Avi_1704 PF13193 AMP-binding enzyme C-terminal domain Avi_1705 PF00378 Enoyl-CoA hydratase/isomerase family Avi_1712 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Avi_1713 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Avi_1714 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Avi_1715 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Avi_1717 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin Avi_1718 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Avi_1718 PF10531 SLBB domain Avi_1718 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Avi_1720 PF00384 Molybdopterin oxidoreductase Avi_1720 PF09326 Avi_1720 Avi_1720 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Avi_1720 PF13510 2Fe-2S iron-sulfur cluster binding domain Avi_1721 PF00146 NADH dehydrogenase Avi_1723 PF12838 4Fe-4S dicluster domain Avi_1724 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Avi_1726 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Avi_1727 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Avi_1727 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Avi_1727 PF06455 Avi_1727 Avi_1728 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Avi_1728 PF01059 Avi_1728 Avi_1729 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Avi_1730 PF02237 Biotin protein ligase C terminal domain Avi_1730 PF03099 Biotin/lipoate A/B protein ligase family Avi_1731 PF07521 RNA-metabolising metallo-beta-lactamase Avi_1731 PF12706 Beta-lactamase superfamily domain Avi_1733 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_1735 PF01042 Endoribonuclease L-PSP Avi_1736 PF00440 Bacterial regulatory proteins, tetR family Avi_1737 PF07330 Avi_1737 Avi_1739 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Avi_1739 PF03129 Anticodon binding domain Avi_1740 PF02687 Avi_1740 Avi_1740 PF12704 MacB-like periplasmic core domain Avi_1741 PF00005 ABC transporter Avi_1742 PF01336 OB-fold nucleic acid binding domain Avi_1742 PF02811 PHP domain Avi_1742 PF07733 Bacterial DNA polymerase III alpha subunit Avi_1742 PF14579 Helix-hairpin-helix motif Avi_1744 PF03734 L,D-transpeptidase catalytic domain Avi_1745 PF00817 impB/mucB/samB family Avi_1745 PF11799 impB/mucB/samB family C-terminal domain Avi_1748 PF12096 Avi_1748 Avi_1749 PF00072 Response regulator receiver domain Avi_1750 PF00072 Response regulator receiver domain Avi_1750 PF00990 GGDEF domain Avi_1751 PF00471 Ribosomal protein L33 Avi_1753 PF07690 Major Facilitator Superfamily Avi_1754 PF06170 Avi_1754 Avi_1755 PF00575 S1 RNA binding domain Avi_1755 PF00773 RNB domain Avi_1756 PF01131 DNA topoisomerase Avi_1756 PF01396 Avi_1756 Avi_1756 PF01751 Toprim domain Avi_1756 PF13368 Avi_1756 Avi_1759 PF02481 DNA recombination-mediator protein A Avi_1760 PF02660 Avi_1760 Avi_1761 PF01979 Amidohydrolase family Avi_1762 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Avi_1762 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Avi_1763 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Avi_1763 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_1764 PF00583 Acetyltransferase (GNAT) family Avi_1768 PF03652 Uncharacterised protein family (UPF0081) Avi_1769 PF13483 Beta-lactamase superfamily domain Avi_1770 PF02686 Glu-tRNAGln amidotransferase C subunit Avi_1773 PF01425 Amidase Avi_1774 PF00583 Acetyltransferase (GNAT) family Avi_1775 PF13673 Acetyltransferase (GNAT) domain Avi_1776 PF13231 Avi_1776 Avi_1777 PF07578 Lipid A Biosynthesis N-terminal domain Avi_1778 PF00535 Glycosyl transferase family 2 Avi_1781 PF02637 GatB domain Avi_1781 PF02934 GatB/GatE catalytic domain Avi_1782 PF13673 Acetyltransferase (GNAT) domain Avi_1783 PF13508 Acetyltransferase (GNAT) domain Avi_1784 PF05071 Avi_1784 Avi_1785 PF09923 Avi_1785 Avi_1786 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Avi_1787 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Avi_1787 PF02785 Biotin carboxylase C-terminal domain Avi_1787 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_1788 PF00364 Biotin-requiring enzyme Avi_1789 PF01220 Dehydroquinase class II Avi_1790 PF01323 DSBA-like thioredoxin domain Avi_1792 PF00155 Aminotransferase class I and II Avi_1793 PF13302 Acetyltransferase (GNAT) domain Avi_1794 PF10150 Ribonuclease E/G family Avi_1795 PF01520 N-acetylmuramoyl-L-alanine amidase Avi_1795 PF11741 AMIN domain Avi_1797 PF00905 Penicillin binding protein transpeptidase domain Avi_1797 PF00912 Transglycosylase Avi_1797 PF17092 Avi_1797 Avi_1799 PF00472 RF-1 domain Avi_1799 PF03462 PCRF domain Avi_1801 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Avi_1804 PF01513 ATP-NAD kinase Avi_1810 PF00588 SpoU rRNA Methylase family Avi_1810 PF08032 RNA 2'-O ribose methyltransferase substrate binding Avi_1812 PF00009 Elongation factor Tu GTP binding domain Avi_1812 PF03143 Elongation factor Tu C-terminal domain Avi_1812 PF03144 Elongation factor Tu domain 2 Avi_1817 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Avi_1818 PF00467 KOW motif Avi_1818 PF02357 Transcription termination factor nusG Avi_1819 PF00298 Ribosomal protein L11, RNA binding domain Avi_1819 PF03946 Ribosomal protein L11, N-terminal domain Avi_1820 PF00687 Ribosomal protein L1p/L10e family Avi_1822 PF00466 Ribosomal protein L10 Avi_1823 PF00542 Ribosomal protein L7/L12 C-terminal domain Avi_1823 PF16320 Avi_1823 Avi_1826 PF00562 RNA polymerase Rpb2, domain 6 Avi_1826 PF04560 RNA polymerase Rpb2, domain 7 Avi_1826 PF04561 RNA polymerase Rpb2, domain 2 Avi_1826 PF04563 RNA polymerase beta subunit Avi_1826 PF04565 RNA polymerase Rpb2, domain 3 Avi_1826 PF10385 RNA polymerase beta subunit external 1 domain Avi_1827 PF00623 RNA polymerase Rpb1, domain 2 Avi_1827 PF04983 RNA polymerase Rpb1, domain 3 Avi_1827 PF04997 RNA polymerase Rpb1, domain 1 Avi_1827 PF04998 RNA polymerase Rpb1, domain 5 Avi_1827 PF05000 RNA polymerase Rpb1, domain 4 Avi_1829 PF00293 NUDIX domain Avi_1833 PF00164 Ribosomal protein S12/S23 Avi_1834 PF00177 Ribosomal protein S7p/S5e Avi_1835 PF00009 Elongation factor Tu GTP binding domain Avi_1835 PF00679 Elongation factor G C-terminus Avi_1835 PF03144 Elongation factor Tu domain 2 Avi_1835 PF03764 Elongation factor G, domain IV Avi_1835 PF14492 Elongation Factor G, domain II Avi_1837 PF00009 Elongation factor Tu GTP binding domain Avi_1837 PF03143 Elongation factor Tu C-terminal domain Avi_1837 PF03144 Elongation factor Tu domain 2 Avi_1839 PF00338 Ribosomal protein S10p/S20e Avi_1840 PF00297 Ribosomal protein L3 Avi_1841 PF00573 Ribosomal protein L4/L1 family Avi_1842 PF00276 Ribosomal protein L23 Avi_1843 PF00181 Ribosomal Proteins L2, RNA binding domain Avi_1843 PF03947 Ribosomal Proteins L2, C-terminal domain Avi_1844 PF00203 Ribosomal protein S19 Avi_1845 PF00237 Ribosomal protein L22p/L17e Avi_1846 PF00189 Ribosomal protein S3, C-terminal domain Avi_1846 PF07650 KH domain Avi_1847 PF00252 Ribosomal protein L16p/L10e Avi_1848 PF00831 Ribosomal L29 protein Avi_1849 PF00366 Ribosomal protein S17 Avi_1850 PF00238 Ribosomal protein L14p/L23e Avi_1851 PF00467 KOW motif Avi_1851 PF17136 Avi_1851 Avi_1853 PF00281 Ribosomal protein L5 Avi_1853 PF00673 ribosomal L5P family C-terminus Avi_1854 PF00253 Ribosomal protein S14p/S29e Avi_1855 PF00410 Ribosomal protein S8 Avi_1856 PF00347 Ribosomal protein L6 Avi_1857 PF00861 Ribosomal L18p/L5e family Avi_1859 PF00333 Ribosomal protein S5, N-terminal domain Avi_1859 PF03719 Ribosomal protein S5, C-terminal domain Avi_1861 PF00327 Ribosomal protein L30p/L7e Avi_1862 PF00828 Ribosomal protein L18e/L15 Avi_1863 PF00344 SecY translocase Avi_1864 PF00406 Adenylate kinase Avi_1864 PF05191 Adenylate kinase, active site lid Avi_1865 PF00416 Ribosomal protein S13/S18 Avi_1866 PF00411 Ribosomal protein S11 Avi_1867 PF01000 RNA polymerase Rpb3/RpoA insert domain Avi_1867 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Avi_1867 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Avi_1869 PF01196 Ribosomal protein L17 Avi_1872 PF06516 Avi_1872 Avi_1875 PF10990 Avi_1875 Avi_1877 PF00581 Rhodanese-like domain Avi_1877 PF00583 Acetyltransferase (GNAT) family Avi_1878 PF01411 tRNA synthetases class II (A) Avi_1878 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Avi_1879 PF00291 Pyridoxal-phosphate dependent enzyme Avi_1880 PF00875 DNA photolyase Avi_1880 PF03441 FAD binding domain of DNA photolyase Avi_1882 PF01551 Peptidase family M23 Avi_1883 PF04305 Avi_1883 Avi_1886 PF00578 AhpC/TSA family Avi_1887 PF13116 Avi_1887 Avi_1888 PF11064 Avi_1888 Avi_1889 PF00765 Autoinducer synthetase Avi_1890 PF00196 Bacterial regulatory proteins, luxR family Avi_1891 PF00390 Malic enzyme, N-terminal domain Avi_1891 PF01515 Phosphate acetyl/butaryl transferase Avi_1891 PF03949 Malic enzyme, NAD binding domain Avi_1892 PF12850 Calcineurin-like phosphoesterase superfamily domain Avi_1893 PF02405 Avi_1893 Avi_1894 PF00005 ABC transporter Avi_1895 PF02470 Avi_1895 Avi_1896 PF03886 Protein of unknown function (DUF330) Avi_1897 PF00155 Aminotransferase class I and II Avi_1897 PF00392 Bacterial regulatory proteins, gntR family Avi_1898 PF09411 Lipid A 3-O-deacylase (PagL) Avi_1902 PF13507 CobB/CobQ-like glutamine amidotransferase domain Avi_1905 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase Avi_1906 PF01259 SAICAR synthetase Avi_1908 PF06821 Serine hydrolase Avi_1909 PF07519 Tannase and feruloyl esterase Avi_1910 PF00990 GGDEF domain Avi_1911 PF02798 Glutathione S-transferase, N-terminal domain Avi_1913 PF00180 Isocitrate/isopropylmalate dehydrogenase Avi_1915 PF00588 SpoU rRNA Methylase family Avi_1916 PF01177 Asp/Glu/Hydantoin racemase Avi_1917 PF08327 Activator of Hsp90 ATPase homolog 1-like protein Avi_1919 PF00571 CBS domain Avi_1919 PF01595 Avi_1919 Avi_1919 PF03471 Transporter associated domain Avi_1920 PF01935 Domain of unknown function DUF87 Avi_1921 PF07859 alpha/beta hydrolase fold Avi_1922 PF01546 Peptidase family M20/M25/M40 Avi_1922 PF07687 Peptidase dimerisation domain Avi_1923 PF00484 Carbonic anhydrase Avi_1925 PF00916 Avi_1925 Avi_1926 PF03741 Avi_1926 Avi_1927 PF00163 Ribosomal protein S4/S9 N-terminal domain Avi_1927 PF01479 S4 domain Avi_1928 PF04960 Glutaminase Avi_1930 PF04794 YdjC-like protein Avi_1931 PF01171 PP-loop family Avi_1933 PF00459 Inositol monophosphatase family Avi_1934 PF00459 Inositol monophosphatase family Avi_1935 PF07690 Major Facilitator Superfamily Avi_1936 PF00462 Glutaredoxin Avi_1939 PF01722 BolA-like protein Avi_1941 PF00586 AIR synthase related protein, N-terminal domain Avi_1941 PF02769 AIR synthase related protein, C-terminal domain Avi_1945 PF00226 DnaJ domain Avi_1948 PF03099 Biotin/lipoate A/B protein ligase family Avi_1950 PF01061 Avi_1950 Avi_1951 PF00589 Phage integrase family Avi_1954 PF00717 Peptidase S24-like Avi_1963 PF13730 Avi_1963 Avi_1964 PF02357 Transcription termination factor nusG Avi_1966 PF05119 Avi_1966 Avi_1967 PF03354 Avi_1967 Avi_1968 PF04860 Phage portal protein Avi_1969 PF04586 Avi_1969 Avi_1970 PF05065 Phage capsid family Avi_1973 PF05135 Phage gp6-like head-tail connector protein Avi_1977 PF04883 Avi_1977 Avi_1978 PF11367 Protein of unknown function (DUF3168) Avi_1979 PF06199 Avi_1979 Avi_1983 PF00483 Nucleotidyl transferase Avi_1984 PF04321 RmlD substrate binding domain Avi_1986 PF16363 Avi_1986 Avi_1988 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Avi_1994 PF13550 Avi_1994 Avi_1998 PF01381 Helix-turn-helix Avi_2000 PF05016 Plasmid stabilisation system protein Avi_2001 PF00182 Chitinase class I Avi_2007 PF05045 Avi_2007 Avi_2009 PF00535 Glycosyl transferase family 2 Avi_2012 PF12760 Transposase zinc-ribbon domain Avi_2012 PF12762 Avi_2012 Avi_2013 PF13975 Avi_2013 Avi_2014 PF06945 Avi_2014 Avi_2016 PF02654 Avi_2016 Avi_2018 PF02277 Phosphoribosyltransferase Avi_2020 PF01219 Prokaryotic diacylglycerol kinase Avi_2023 PF04966 Carbohydrate-selective porin, OprB family Avi_2024 PF04972 BON domain Avi_2025 PF01327 Polypeptide deformylase Avi_2026 PF00027 Cyclic nucleotide-binding domain Avi_2026 PF13545 Crp-like helix-turn-helix domain Avi_2028 PF04055 Radical SAM superfamily Avi_2028 PF06969 HemN C-terminal domain Avi_2029 PF00550 Phosphopantetheine attachment site Avi_2030 PF07977 FabA-like domain Avi_2033 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_2035 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_2035 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_2036 PF00107 Zinc-binding dehydrogenase Avi_2036 PF08240 Alcohol dehydrogenase GroES-like domain Avi_2037 PF03279 Avi_2037 Avi_2040 PF00795 Carbon-nitrogen hydrolase Avi_2040 PF02540 NAD synthase Avi_2041 PF07676 WD40-like Beta Propeller Repeat Avi_2042 PF00881 Nitroreductase family Avi_2043 PF02805 Metal binding domain of Ada Avi_2043 PF12833 Helix-turn-helix domain Avi_2044 PF00892 EamA-like transporter family Avi_2045 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Avi_2045 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Avi_2046 PF00579 tRNA synthetases class I (W and Y) Avi_2047 PF03702 Uncharacterised protein family (UPF0075) Avi_2047 PF13302 Acetyltransferase (GNAT) domain Avi_2051 PF00512 His Kinase A (phospho-acceptor) domain Avi_2051 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_2052 PF00565 Staphylococcal nuclease homologue Avi_2054 PF03167 Uracil DNA glycosylase superfamily Avi_2055 PF01037 AsnC family Avi_2055 PF13412 Winged helix-turn-helix DNA-binding Avi_2057 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Avi_2057 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Avi_2058 PF00561 alpha/beta hydrolase fold Avi_2059 PF13847 Methyltransferase domain Avi_2062 PF06233 Avi_2062 Avi_2064 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2065 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2066 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_2068 PF00691 OmpA family Avi_2069 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Avi_2070 PF12804 MobA-like NTP transferase domain Avi_2071 PF00892 EamA-like transporter family Avi_2072 PF04055 Radical SAM superfamily Avi_2072 PF06463 Molybdenum Cofactor Synthesis C Avi_2072 PF13353 4Fe-4S single cluster domain Avi_2074 PF06155 Protein of unknown function (DUF971) Avi_2075 PF00990 GGDEF domain Avi_2076 PF05681 Avi_2076 Avi_2076 PF05683 Fumarase C-terminus Avi_2077 PF00206 Lyase Avi_2077 PF10415 Fumarase C C-terminus Avi_2078 PF01471 Putative peptidoglycan binding domain Avi_2078 PF03734 L,D-transpeptidase catalytic domain Avi_2080 PF13419 Haloacid dehalogenase-like hydrolase Avi_2081 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Avi_2085 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Avi_2085 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_2087 PF01474 Class-II DAHP synthetase family Avi_2088 PF01814 Hemerythrin HHE cation binding domain Avi_2092 PF00115 Cytochrome C and Quinol oxidase polypeptide I Avi_2093 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO Avi_2094 PF05545 Avi_2094 Avi_2096 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Avi_2096 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Avi_2097 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_2098 PF00563 EAL domain Avi_2098 PF00990 GGDEF domain Avi_2099 PF00271 Helicase conserved C-terminal domain Avi_2099 PF02151 UvrB/uvrC motif Avi_2099 PF04851 Type III restriction enzyme, res subunit Avi_2099 PF12344 Ultra-violet resistance protein B Avi_2100 PF01019 Gamma-glutamyltranspeptidase Avi_2101 PF07969 Amidohydrolase family Avi_2102 PF01979 Amidohydrolase family Avi_2106 PF13468 Glyoxalase-like domain Avi_2107 PF00793 DAHP synthetase I family Avi_2109 PF00113 Enolase, C-terminal TIM barrel domain Avi_2109 PF03952 Enolase, N-terminal domain Avi_2110 PF04977 Septum formation initiator Avi_2112 PF00676 Dehydrogenase E1 component Avi_2114 PF00364 Biotin-requiring enzyme Avi_2114 PF02779 Transketolase, pyrimidine binding domain Avi_2114 PF02780 Transketolase, C-terminal domain Avi_2115 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Avi_2115 PF00364 Biotin-requiring enzyme Avi_2115 PF02817 e3 binding domain Avi_2117 PF13472 GDSL-like Lipase/Acylhydrolase family Avi_2119 PF04325 Protein of unknown function (DUF465) Avi_2120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Avi_2120 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_2122 PF04226 Avi_2122 Avi_2123 PF04055 Radical SAM superfamily Avi_2123 PF16881 Avi_2123 Avi_2127 PF07690 Major Facilitator Superfamily Avi_2128 PF03364 Polyketide cyclase / dehydrase and lipid transport Avi_2130 PF02464 Competence-damaged protein Avi_2131 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Avi_2131 PF02542 YgbB family Avi_2132 PF01207 Dihydrouridine synthase (Dus) Avi_2134 PF00512 His Kinase A (phospho-acceptor) domain Avi_2134 PF00989 PAS fold Avi_2134 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_2135 PF00072 Response regulator receiver domain Avi_2135 PF00158 Sigma-54 interaction domain Avi_2135 PF02954 Bacterial regulatory protein, Fis family Avi_2136 PF00512 His Kinase A (phospho-acceptor) domain Avi_2136 PF00672 HAMP domain Avi_2136 PF00989 PAS fold Avi_2136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_2137 PF00072 Response regulator receiver domain Avi_2137 PF00158 Sigma-54 interaction domain Avi_2137 PF02954 Bacterial regulatory protein, Fis family Avi_2139 PF17209 Avi_2139 Avi_2142 PF01926 50S ribosome-binding GTPase Avi_2142 PF13167 Avi_2142 Avi_2142 PF16360 Avi_2142 Avi_2144 PF03819 MazG nucleotide pyrophosphohydrolase domain Avi_2145 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Avi_2146 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Avi_2146 PF10414 Sirohaem synthase dimerisation region Avi_2146 PF13241 Putative NAD(P)-binding Avi_2147 PF11011 Avi_2147 Avi_2148 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Avi_2148 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Avi_2149 PF06073 Avi_2149 Avi_2150 PF00970 Oxidoreductase FAD-binding domain Avi_2152 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_2153 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Avi_2154 PF00768 D-alanyl-D-alanine carboxypeptidase Avi_2154 PF07943 Penicillin-binding protein 5, C-terminal domain Avi_2155 PF02223 Thymidylate kinase Avi_2156 PF13177 DNA polymerase III, delta subunit Avi_2157 PF01925 Avi_2157 Avi_2158 PF08264 Anticodon-binding domain of tRNA Avi_2158 PF09334 tRNA synthetases class I (M) Avi_2159 PF01026 TatD related DNase Avi_2160 PF12706 Beta-lactamase superfamily domain Avi_2161 PF00654 Voltage gated chloride channel Avi_2162 PF02683 Avi_2162 Avi_2163 PF01494 FAD binding domain Avi_2166 PF00005 ABC transporter Avi_2167 PF02653 Avi_2167 Avi_2168 PF02653 Avi_2168 Avi_2169 PF02608 Basic membrane protein Avi_2170 PF00132 Bacterial transferase hexapeptide (six repeats) Avi_2170 PF12804 MobA-like NTP transferase domain Avi_2170 PF14602 Hexapeptide repeat of succinyl-transferase Avi_2171 PF01380 SIS domain Avi_2171 PF13522 Glutamine amidotransferase domain Avi_2172 PF04367 Avi_2172 Avi_2173 PF13449 Esterase-like activity of phytase Avi_2174 PF03009 Glycerophosphoryl diester phosphodiesterase family Avi_2174 PF16387 Avi_2174 Avi_2178 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2179 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2180 PF00005 ABC transporter Avi_2180 PF08402 TOBE domain Avi_2181 PF13416 Bacterial extracellular solute-binding protein Avi_2182 PF00480 ROK family Avi_2183 PF02492 CobW/HypB/UreG, nucleotide-binding domain Avi_2183 PF07683 Cobalamin synthesis protein cobW C-terminal domain Avi_2184 PF01297 Periplasmic solute binding protein family Avi_2185 PF00005 ABC transporter Avi_2187 PF00950 Avi_2187 Avi_2188 PF01475 Ferric uptake regulator family Avi_2190 PF00132 Bacterial transferase hexapeptide (six repeats) Avi_2194 PF00768 D-alanyl-D-alanine carboxypeptidase Avi_2194 PF05036 Sporulation related domain Avi_2198 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP Avi_2200 PF07238 PilZ domain Avi_2201 PF01569 PAP2 superfamily Avi_2201 PF12951 Avi_2201 Avi_2202 PF01694 Rhomboid family Avi_2203 PF00571 CBS domain Avi_2204 PF01734 Patatin-like phospholipase Avi_2205 PF01502 Phosphoribosyl-AMP cyclohydrolase Avi_2207 PF01227 GTP cyclohydrolase I Avi_2208 PF01592 NifU-like N terminal domain Avi_2209 PF01809 Avi_2209 Avi_2211 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Avi_2211 PF02824 TGS domain Avi_2211 PF03129 Anticodon binding domain Avi_2211 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Avi_2215 PF02445 Quinolinate synthetase A protein Avi_2216 PF00890 FAD binding domain Avi_2217 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Avi_2217 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Avi_2220 PF00881 Nitroreductase family Avi_2221 PF01613 Flavin reductase like domain Avi_2223 PF10098 Avi_2223 Avi_2225 PF00583 Acetyltransferase (GNAT) family Avi_2226 PF00204 DNA gyrase B Avi_2226 PF00986 DNA gyrase B subunit, carboxyl terminus Avi_2226 PF01751 Toprim domain Avi_2226 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_2229 PF00990 GGDEF domain Avi_2230 PF00121 Triosephosphate isomerase Avi_2232 PF03840 Preprotein translocase SecG subunit Avi_2233 PF00117 Glutamine amidotransferase class-I Avi_2233 PF06418 CTP synthase N-terminus Avi_2236 PF00144 Beta-lactamase Avi_2237 PF00491 Arginase family Avi_2239 PF01442 Apolipoprotein A1/A4/E domain Avi_2241 PF01627 Hpt domain Avi_2243 PF00111 2Fe-2S iron-sulfur cluster binding domain Avi_2245 PF06037 Avi_2245 Avi_2246 PF00809 Pterin binding enzyme Avi_2247 PF02152 Dihydroneopterin aldolase Avi_2248 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Avi_2252 PF02347 Glycine cleavage system P-protein Avi_2253 PF01597 Glycine cleavage H-protein Avi_2254 PF01571 Aminomethyltransferase folate-binding domain Avi_2254 PF08669 Glycine cleavage T-protein C-terminal barrel domain Avi_2255 PF04314 Protein of unknown function (DUF461) Avi_2259 PF02537 Avi_2259 Avi_2261 PF00849 RNA pseudouridylate synthase Avi_2262 PF13419 Haloacid dehalogenase-like hydrolase Avi_2263 PF07542 ATP12 chaperone protein Avi_2265 PF08980 Domain of unknown function (DUF1883) Avi_2266 PF07690 Major Facilitator Superfamily Avi_2268 PF01810 Avi_2268 Avi_2269 PF00460 Flagella basal body rod protein Avi_2269 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Avi_2270 PF04002 RadC-like JAB domain Avi_2271 PF00557 Metallopeptidase family M24 Avi_2273 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_2273 PF03466 LysR substrate binding domain Avi_2274 PF03601 Avi_2274 Avi_2275 PF03749 Sugar fermentation stimulation protein Avi_2276 PF07167 Avi_2276 Avi_2278 PF00155 Aminotransferase class I and II Avi_2279 PF00742 Homoserine dehydrogenase Avi_2279 PF01842 ACT domain Avi_2279 PF03447 Homoserine dehydrogenase, NAD binding domain Avi_2280 PF01368 DHH family Avi_2280 PF02272 DHHA1 domain Avi_2283 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_2286 PF00313 'Cold-shock' DNA-binding domain Avi_2287 PF02643 Uncharacterized ACR, COG1430 Avi_2288 PF04800 ETC complex I subunit conserved region Avi_2290 PF00589 Phage integrase family Avi_2294 PF02811 PHP domain Avi_2294 PF07733 Bacterial DNA polymerase III alpha subunit Avi_2294 PF14579 Helix-hairpin-helix motif Avi_2300 PF15919 Avi_2300 Avi_2303 PF02498 Avi_2303 Avi_2308 PF06763 Avi_2308 Avi_2311 PF05876 Avi_2311 Avi_2312 PF05136 Avi_2312 Avi_2314 PF01343 Peptidase family S49 Avi_2317 PF02924 Bacteriophage lambda head decoration protein D Avi_2319 PF03864 Phage major capsid protein E Avi_2324 PF04717 Phage-related baseplate assembly protein Avi_2326 PF04965 Gene 25-like lysozyme Avi_2327 PF04865 Avi_2327 Avi_2328 PF09684 Avi_2328 Avi_2330 PF16075 Avi_2330 Avi_2335 PF04985 Avi_2335 Avi_2336 PF10109 Avi_2336 Avi_2337 PF10145 Avi_2337 Avi_2342 PF02498 Avi_2342 Avi_2343 PF09669 Avi_2343 Avi_2344 PF06995 Avi_2344 Avi_2350 PF00959 Phage lysozyme Avi_2360 PF06271 Avi_2360 Avi_2360 PF14237 Avi_2360 Avi_2363 PF00270 DEAD/DEAH box helicase Avi_2363 PF00271 Helicase conserved C-terminal domain Avi_2363 PF01336 OB-fold nucleic acid binding domain Avi_2364 PF03937 Flavinator of succinate dehydrogenase Avi_2366 PF00270 DEAD/DEAH box helicase Avi_2366 PF00271 Helicase conserved C-terminal domain Avi_2366 PF02559 CarD-like/TRCF domain Avi_2366 PF03461 TRCF domain Avi_2368 PF00892 EamA-like transporter family Avi_2369 PF01323 DSBA-like thioredoxin domain Avi_2370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_2372 PF06776 Invasion associated locus B (IalB) protein Avi_2374 PF08755 Hemimethylated DNA-binding protein YccV like Avi_2375 PF00120 Glutamine synthetase, catalytic domain Avi_2375 PF03951 Glutamine synthetase, beta-Grasp domain Avi_2376 PF00543 Nitrogen regulatory protein P-II Avi_2378 PF01256 Carbohydrate kinase Avi_2378 PF03853 YjeF-related protein N-terminus Avi_2379 PF13673 Acetyltransferase (GNAT) domain Avi_2380 PF01904 Protein of unknown function DUF72 Avi_2381 PF00005 ABC transporter Avi_2382 PF00436 Single-strand binding protein family Avi_2385 PF01914 Avi_2385 Avi_2386 PF00521 DNA gyrase/topoisomerase IV, subunit A Avi_2386 PF03989 DNA gyrase C-terminal domain, beta-propeller Avi_2388 PF00122 E1-E2 ATPase Avi_2388 PF00403 Heavy-metal-associated domain Avi_2388 PF00702 haloacid dehalogenase-like hydrolase Avi_2390 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Avi_2390 PF12801 Avi_2390 Avi_2390 PF13746 4Fe-4S dicluster domain Avi_2391 PF05751 Avi_2391 Avi_2393 PF00122 E1-E2 ATPase Avi_2393 PF00403 Heavy-metal-associated domain Avi_2393 PF00702 haloacid dehalogenase-like hydrolase Avi_2394 PF03597 Avi_2394 Avi_2396 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Avi_2396 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Avi_2397 PF12706 Beta-lactamase superfamily domain Avi_2398 PF00356 Bacterial regulatory proteins, lacI family Avi_2398 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Avi_2399 PF01547 Bacterial extracellular solute-binding protein Avi_2400 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2402 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2404 PF00005 ABC transporter Avi_2404 PF08402 TOBE domain Avi_2405 PF00703 Glycosyl hydrolases family 2 Avi_2406 PF01261 Xylose isomerase-like TIM barrel Avi_2407 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_2408 PF00248 Aldo/keto reductase family Avi_2409 PF04616 Glycosyl hydrolases family 43 Avi_2410 PF13844 Glycosyl transferase family 41 Avi_2411 PF13844 Glycosyl transferase family 41 Avi_2412 PF01794 Avi_2412 Avi_2413 PF00174 Oxidoreductase molybdopterin binding domain Avi_2414 PF00920 Dehydratase family Avi_2415 PF13387 Avi_2415 Avi_2416 PF01810 Avi_2416 Avi_2417 PF00206 Lyase Avi_2417 PF10397 Adenylosuccinate lyase C-terminus Avi_2418 PF10016 Avi_2418 Avi_2419 PF00834 Ribulose-phosphate 3 epimerase family Avi_2420 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_2422 PF13458 Periplasmic binding protein Avi_2423 PF01613 Flavin reductase like domain Avi_2425 PF04993 TfoX N-terminal domain Avi_2427 PF00264 Common central domain of tyrosinase Avi_2428 PF09948 Avi_2428 Avi_2429 PF00293 NUDIX domain Avi_2431 PF00270 DEAD/DEAH box helicase Avi_2431 PF00271 Helicase conserved C-terminal domain Avi_2432 PF01810 Avi_2432 Avi_2433 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Avi_2434 PF00266 Aminotransferase class-V Avi_2435 PF01458 Uncharacterized protein family (UPF0051) Avi_2436 PF00005 ABC transporter Avi_2438 PF01458 Uncharacterized protein family (UPF0051) Avi_2439 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_2440 PF00266 Aminotransferase class-V Avi_2441 PF01883 Domain of unknown function DUF59 Avi_2442 PF01521 Iron-sulphur cluster biosynthesis Avi_2445 PF01467 Cytidylyltransferase Avi_2446 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Avi_2448 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Avi_2450 PF02547 Queuosine biosynthesis protein Avi_2451 PF01702 Queuine tRNA-ribosyltransferase Avi_2453 PF00149 Calcineurin-like phosphoesterase Avi_2454 PF07081 Protein of unknown function (DUF1349) Avi_2455 PF02625 XdhC and CoxI family Avi_2455 PF13478 XdhC Rossmann domain Avi_2456 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Avi_2456 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Avi_2457 PF00941 FAD binding domain in molybdopterin dehydrogenase Avi_2457 PF03450 CO dehydrogenase flavoprotein C-terminal domain Avi_2459 PF00111 2Fe-2S iron-sulfur cluster binding domain Avi_2459 PF01799 [2Fe-2S] binding domain Avi_2460 PF00440 Bacterial regulatory proteins, tetR family Avi_2461 PF11769 Avi_2461 Avi_2463 PF00072 Response regulator receiver domain Avi_2463 PF00989 PAS fold Avi_2463 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_2463 PF13188 PAS domain Avi_2465 PF04347 Avi_2465 Avi_2467 PF01258 Prokaryotic dksA/traR C4-type zinc finger Avi_2469 PF00300 Histidine phosphatase superfamily (branch 1) Avi_2470 PF04317 Avi_2470 Avi_2471 PF05128 Avi_2471 Avi_2473 PF00491 Arginase family Avi_2474 PF00155 Aminotransferase class I and II Avi_2476 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Avi_2476 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_2477 PF13483 Beta-lactamase superfamily domain Avi_2478 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Avi_2478 PF05697 Bacterial trigger factor protein (TF) Avi_2478 PF05698 Bacterial trigger factor protein (TF) C-terminus Avi_2479 PF14345 Avi_2479 Avi_2480 PF09925 Avi_2480 Avi_2481 PF06568 Avi_2481 Avi_2483 PF03473 MOSC domain Avi_2484 PF05496 Holliday junction DNA helicase ruvB N-terminus Avi_2484 PF12002 MgsA AAA+ ATPase C terminal Avi_2484 PF16193 Avi_2484 Avi_2485 PF13180 PDZ domain Avi_2485 PF13365 Trypsin-like peptidase domain Avi_2489 PF06718 Avi_2489 Avi_2490 PF00710 Asparaginase Avi_2491 PF07238 PilZ domain Avi_2492 PF00149 Calcineurin-like phosphoesterase Avi_2492 PF02872 5'-nucleotidase, C-terminal domain Avi_2493 PF10115 Avi_2493 Avi_2495 PF00535 Glycosyl transferase family 2 Avi_2496 PF00291 Pyridoxal-phosphate dependent enzyme Avi_2496 PF00585 C-terminal regulatory domain of Threonine dehydratase Avi_2497 PF13379 NMT1-like family Avi_2498 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2499 PF00005 ABC transporter Avi_2500 PF09347 Domain of unknown function (DUF1989) Avi_2501 PF09347 Domain of unknown function (DUF1989) Avi_2502 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Avi_2502 PF00364 Biotin-requiring enzyme Avi_2502 PF02626 Allophanate hydrolase subunit 2 Avi_2502 PF02682 Allophanate hydrolase subunit 1 Avi_2502 PF02785 Biotin carboxylase C-terminal domain Avi_2502 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_2503 PF06821 Serine hydrolase Avi_2504 PF00892 EamA-like transporter family Avi_2506 PF00107 Zinc-binding dehydrogenase Avi_2506 PF08240 Alcohol dehydrogenase GroES-like domain Avi_2507 PF13673 Acetyltransferase (GNAT) domain Avi_2508 PF02639 Avi_2508 Avi_2509 PF07077 Avi_2509 Avi_2510 PF00756 Putative esterase Avi_2511 PF02684 Avi_2511 Avi_2512 PF06230 Protein of unknown function (DUF1009) Avi_2513 PF00132 Bacterial transferase hexapeptide (six repeats) Avi_2513 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Avi_2514 PF07977 FabA-like domain Avi_2515 PF00132 Bacterial transferase hexapeptide (six repeats) Avi_2515 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Avi_2517 PF01103 Surface antigen Avi_2517 PF07244 Surface antigen variable number repeat Avi_2518 PF02163 Peptidase family M50 Avi_2518 PF13180 PDZ domain Avi_2519 PF01148 Cytidylyltransferase family Avi_2520 PF01255 Putative undecaprenyl diphosphate synthase Avi_2521 PF01765 Ribosome recycling factor Avi_2524 PF00696 Amino acid kinase family Avi_2525 PF00889 Elongation factor TS Avi_2528 PF00318 Ribosomal protein S2 Avi_2529 PF08904 Avi_2529 Avi_2531 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease Avi_2532 PF03009 Glycerophosphoryl diester phosphodiesterase family Avi_2533 PF04339 Avi_2533 Avi_2534 PF01230 HIT domain Avi_2535 PF05437 Avi_2535 Avi_2536 PF03591 Avi_2536 Avi_2537 PF00004 ATPase family associated with various cellular activities (AAA) Avi_2537 PF02861 Clp amino terminal domain Avi_2537 PF07724 AAA domain (Cdc48 subfamily) Avi_2537 PF10431 C-terminal, D2-small domain, of ClpB protein Avi_2538 PF02617 ATP-dependent Clp protease adaptor protein ClpS Avi_2539 PF09361 Avi_2539 Avi_2541 PF11324 Avi_2541 Avi_2542 PF00132 Bacterial transferase hexapeptide (six repeats) Avi_2542 PF06426 Serine acetyltransferase, N-terminal Avi_2544 PF00378 Enoyl-CoA hydratase/isomerase family Avi_2545 PF00561 alpha/beta hydrolase fold Avi_2547 PF10276 Zinc-finger domain Avi_2548 PF01494 FAD binding domain Avi_2549 PF01053 Cys/Met metabolism PLP-dependent enzyme Avi_2551 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_2552 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2553 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2554 PF00005 ABC transporter Avi_2557 PF01411 tRNA synthetases class II (A) Avi_2557 PF02272 DHHA1 domain Avi_2557 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Avi_2558 PF00154 recA bacterial DNA recombination protein Avi_2559 PF00294 pfkB family carbohydrate kinase Avi_2560 PF04227 Indigoidine synthase A like protein Avi_2561 PF00717 Peptidase S24-like Avi_2561 PF01726 LexA DNA binding domain Avi_2562 PF03772 Avi_2562 Avi_2562 PF13567 Avi_2562 Avi_2563 PF00285 Citrate synthase Avi_2565 PF13145 PPIC-type PPIASE domain Avi_2565 PF13624 SurA N-terminal domain Avi_2566 PF00591 Glycosyl transferase family, a/b domain Avi_2566 PF02885 Glycosyl transferase family, helical bundle domain Avi_2567 PF00218 Indole-3-glycerol phosphate synthase Avi_2568 PF01967 MoaC family Avi_2569 PF00994 Probable molybdopterin binding domain Avi_2569 PF03453 MoeA N-terminal region (domain I and II) Avi_2569 PF03454 MoeA C-terminal region (domain IV) Avi_2570 PF01569 PAP2 superfamily Avi_2571 PF07685 CobB/CobQ-like glutamine amidotransferase domain Avi_2571 PF13500 AAA domain Avi_2573 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Avi_2574 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2575 PF00005 ABC transporter Avi_2576 PF00535 Glycosyl transferase family 2 Avi_2579 PF13844 Glycosyl transferase family 41 Avi_2581 PF09992 Predicted periplasmic protein (DUF2233) Avi_2584 PF00551 Formyl transferase Avi_2585 PF00067 Cytochrome P450 Avi_2586 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_2586 PF03466 LysR substrate binding domain Avi_2590 PF01965 DJ-1/PfpI family Avi_2590 PF12833 Helix-turn-helix domain Avi_2594 PF13419 Haloacid dehalogenase-like hydrolase Avi_2595 PF12804 MobA-like NTP transferase domain Avi_2598 PF00717 Peptidase S24-like Avi_2599 PF02867 Ribonucleotide reductase, barrel domain Avi_2599 PF08471 Avi_2599 Avi_2600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2600 PF00672 HAMP domain Avi_2602 PF00156 Phosphoribosyl transferase domain Avi_2606 PF00994 Probable molybdopterin binding domain Avi_2608 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2609 PF01584 CheW-like domain Avi_2611 PF07370 Avi_2611 Avi_2612 PF03313 Avi_2612 Avi_2612 PF03315 Serine dehydratase beta chain Avi_2613 PF04654 Avi_2613 Avi_2615 PF07786 Avi_2615 Avi_2616 PF04191 Phospholipid methyltransferase Avi_2617 PF13411 MerR HTH family regulatory protein Avi_2620 PF00571 CBS domain Avi_2620 PF01769 Divalent cation transporter Avi_2620 PF03448 MgtE intracellular N domain Avi_2621 PF03186 Avi_2621 Avi_2622 PF00155 Aminotransferase class I and II Avi_2623 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Avi_2623 PF07685 CobB/CobQ-like glutamine amidotransferase domain Avi_2624 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Avi_2627 PF01888 CbiD Avi_2628 PF02571 Avi_2628 Avi_2630 PF03975 CheD chemotactic sensory transduction Avi_2631 PF00583 Acetyltransferase (GNAT) family Avi_2632 PF01156 Inosine-uridine preferring nucleoside hydrolase Avi_2635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Avi_2636 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Avi_2636 PF01890 Cobalamin synthesis G C-terminus Avi_2636 PF11760 Cobalamin synthesis G N-terminal Avi_2637 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Avi_2638 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Avi_2638 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Avi_2639 PF02570 Precorrin-8X methylmutase Avi_2641 PF01903 CbiX Avi_2642 PF01925 Avi_2642 Avi_2643 PF03693 Uncharacterised protein family (UPF0156) Avi_2644 PF05016 Plasmid stabilisation system protein Avi_2646 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Avi_2646 PF12557 Cob(I)alamin adenosyltransferase N terminal Avi_2647 PF02514 Avi_2647 Avi_2648 PF02492 CobW/HypB/UreG, nucleotide-binding domain Avi_2648 PF07683 Cobalamin synthesis protein cobW C-terminal domain Avi_2650 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Avi_2653 PF06568 Avi_2653 Avi_2654 PF01134 Glucose inhibited division protein A Avi_2656 PF00494 Squalene/phytoene synthase Avi_2657 PF04430 Protein of unknown function (DUF498/DUF598) Avi_2658 PF02355 Protein export membrane protein Avi_2658 PF07549 SecD/SecF GG Motif Avi_2659 PF02699 Preprotein translocase subunit Avi_2661 PF05673 Protein of unknown function (DUF815) Avi_2662 PF01476 LysM domain Avi_2662 PF01551 Peptidase family M23 Avi_2663 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Avi_2664 PF01975 Survival protein SurE Avi_2665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Avi_2665 PF02403 Seryl-tRNA synthetase N-terminal domain Avi_2666 PF00902 Sec-independent protein translocase protein (TatC) Avi_2667 PF02416 mttA/Hcf106 family Avi_2668 PF02416 mttA/Hcf106 family Avi_2670 PF04079 Putative transcriptional regulators (Ypuh-like) Avi_2671 PF02616 ScpA/B protein Avi_2673 PF00933 Glycosyl hydrolase family 3 N terminal domain Avi_2674 PF05036 Sporulation related domain Avi_2675 PF00750 tRNA synthetases class I (R) Avi_2675 PF03485 Arginyl tRNA synthetase N terminal domain Avi_2675 PF05746 DALR anticodon binding domain Avi_2676 PF01966 HD domain Avi_2676 PF13286 Phosphohydrolase-associated domain Avi_2678 PF01521 Iron-sulphur cluster biosynthesis Avi_2680 PF03372 Endonuclease/Exonuclease/phosphatase family Avi_2681 PF08238 Sel1 repeat Avi_2682 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Avi_2683 PF00133 tRNA synthetases class I (I, L, M and V) Avi_2683 PF08264 Anticodon-binding domain of tRNA Avi_2683 PF10458 Valyl tRNA synthetase tRNA binding arm Avi_2684 PF10691 Avi_2684 Avi_2686 PF02321 Outer membrane efflux protein Avi_2687 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Avi_2693 PF00459 Inositol monophosphatase family Avi_2694 PF03009 Glycerophosphoryl diester phosphodiesterase family Avi_2696 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2697 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2698 PF00005 ABC transporter Avi_2698 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_2699 PF00005 ABC transporter Avi_2699 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_2700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_2701 PF00455 Avi_2701 Avi_2701 PF08220 DeoR-like helix-turn-helix domain Avi_2704 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_2704 PF03466 LysR substrate binding domain Avi_2705 PF13416 Bacterial extracellular solute-binding protein Avi_2706 PF00005 ABC transporter Avi_2706 PF08402 TOBE domain Avi_2707 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2708 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2709 PF01266 FAD dependent oxidoreductase Avi_2710 PF13510 2Fe-2S iron-sulfur cluster binding domain Avi_2712 PF04324 BFD-like [2Fe-2S] binding domain Avi_2712 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_2713 PF05598 Avi_2713 Avi_2713 PF13751 Avi_2713 Avi_2714 PF01548 Avi_2714 Avi_2714 PF02371 Avi_2714 Avi_2715 PF13683 Avi_2715 Avi_2722 PF01061 Avi_2722 Avi_2723 PF00005 ABC transporter Avi_2726 PF00072 Response regulator receiver domain Avi_2727 PF01266 FAD dependent oxidoreductase Avi_2727 PF01571 Aminomethyltransferase folate-binding domain Avi_2727 PF08669 Glycine cleavage T-protein C-terminal barrel domain Avi_2727 PF16350 Avi_2727 Avi_2728 PF13560 Helix-turn-helix domain Avi_2729 PF08241 Methyltransferase domain Avi_2730 PF00924 Mechanosensitive ion channel Avi_2731 PF06228 Haem utilisation ChuX/HutX Avi_2732 PF03992 Antibiotic biosynthesis monooxygenase Avi_2734 PF01497 Periplasmic binding protein Avi_2735 PF01032 FecCD transport family Avi_2736 PF00005 ABC transporter Avi_2737 PF08241 Methyltransferase domain Avi_2739 PF04185 Phosphoesterase family Avi_2740 PF16872 Avi_2740 Avi_2741 PF03852 DNA mismatch endonuclease Vsr Avi_2742 PF00145 C-5 cytosine-specific DNA methylase Avi_2743 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_2744 PF10593 Avi_2744 Avi_2745 PF14390 Avi_2745 Avi_2746 PF10592 Avi_2746 Avi_2750 PF00656 Caspase domain Avi_2751 PF01527 Transposase Avi_2753 PF00665 Integrase core domain Avi_2753 PF13276 Avi_2753 Avi_2758 PF05954 Phage late control gene D protein (GPD) Avi_2759 PF09937 Avi_2759 Avi_2760 PF13665 Avi_2760 Avi_2761 PF00847 AP2 domain Avi_2764 PF02357 Transcription termination factor nusG Avi_2770 PF13392 HNH endonuclease Avi_2772 PF02567 Phenazine biosynthesis-like protein Avi_2775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2775 PF08447 PAS fold Avi_2775 PF13426 PAS domain Avi_2776 PF02310 B12 binding domain Avi_2776 PF02607 B12 binding domain Avi_2776 PF13411 MerR HTH family regulatory protein Avi_2778 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Avi_2778 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain Avi_2780 PF00440 Bacterial regulatory proteins, tetR family Avi_2782 PF01625 Peptide methionine sulfoxide reductase Avi_2784 PF05239 PRC-barrel domain Avi_2786 PF01037 AsnC family Avi_2786 PF13412 Winged helix-turn-helix DNA-binding Avi_2787 PF01177 Asp/Glu/Hydantoin racemase Avi_2789 PF00440 Bacterial regulatory proteins, tetR family Avi_2790 PF07690 Major Facilitator Superfamily Avi_2791 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2791 PF13426 PAS domain Avi_2792 PF01638 HxlR-like helix-turn-helix Avi_2793 PF05368 NmrA-like family Avi_2794 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Avi_2795 PF00196 Bacterial regulatory proteins, luxR family Avi_2795 PF13411 MerR HTH family regulatory protein Avi_2796 PF13538 UvrD-like helicase C-terminal domain Avi_2796 PF13604 AAA domain Avi_2797 PF01810 Avi_2797 Avi_2798 PF00248 Aldo/keto reductase family Avi_2801 PF01842 ACT domain Avi_2801 PF10369 Small subunit of acetolactate synthase Avi_2802 PF00205 Thiamine pyrophosphate enzyme, central domain Avi_2802 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Avi_2802 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Avi_2804 PF01935 Domain of unknown function DUF87 Avi_2805 PF01694 Rhomboid family Avi_2808 PF01715 IPP transferase Avi_2809 PF12710 haloacid dehalogenase-like hydrolase Avi_2810 PF13302 Acetyltransferase (GNAT) domain Avi_2812 PF13180 PDZ domain Avi_2812 PF13365 Trypsin-like peptidase domain Avi_2816 PF01145 SPFH domain / Band 7 family Avi_2818 PF01145 SPFH domain / Band 7 family Avi_2818 PF12221 Avi_2818 Avi_2819 PF00186 Dihydrofolate reductase Avi_2820 PF07681 Avi_2820 Avi_2822 PF00303 Thymidylate synthase Avi_2824 PF04386 Stringent starvation protein B Avi_2825 PF13770 Avi_2825 Avi_2826 PF13467 Ribbon-helix-helix domain Avi_2828 PF05170 Avi_2828 Avi_2828 PF13502 Avi_2828 Avi_2829 PF01565 FAD binding domain Avi_2829 PF02913 FAD linked oxidases, C-terminal domain Avi_2830 PF00005 ABC transporter Avi_2831 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2832 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2833 PF12849 PBP superfamily domain Avi_2836 PF00580 UvrD/REP helicase N-terminal domain Avi_2836 PF13361 UvrD-like helicase C-terminal domain Avi_2837 PF16263 Avi_2837 Avi_2838 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Avi_2839 PF01850 PIN domain Avi_2843 PF01011 PQQ enzyme repeat Avi_2843 PF13360 PQQ-like domain Avi_2845 PF00857 Isochorismatase family Avi_2846 PF02569 Pantoate-beta-alanine ligase Avi_2847 PF02548 Ketopantoate hydroxymethyltransferase Avi_2848 PF01925 Avi_2848 Avi_2849 PF00890 FAD binding domain Avi_2849 PF02910 Fumarate reductase flavoprotein C-term Avi_2851 PF09932 Avi_2851 Avi_2852 PF03591 Avi_2852 Avi_2853 PF05437 Avi_2853 Avi_2855 PF00557 Metallopeptidase family M24 Avi_2855 PF01321 Creatinase/Prolidase N-terminal domain Avi_2855 PF16188 Avi_2855 Avi_2855 PF16189 Avi_2855 Avi_2857 PF06325 Ribosomal protein L11 methyltransferase (PrmA) Avi_2858 PF02630 SCO1/SenC Avi_2860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2861 PF01584 CheW-like domain Avi_2864 PF05981 Avi_2864 Avi_2865 PF00929 Exonuclease Avi_2869 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2870 PF00583 Acetyltransferase (GNAT) family Avi_2871 PF00270 DEAD/DEAH box helicase Avi_2871 PF00271 Helicase conserved C-terminal domain Avi_2871 PF03880 DbpA RNA binding domain Avi_2873 PF01593 Flavin containing amine oxidoreductase Avi_2873 PF13450 NAD(P)-binding Rossmann-like domain Avi_2874 PF00583 Acetyltransferase (GNAT) family Avi_2874 PF12802 MarR family Avi_2876 PF00533 BRCA1 C Terminus (BRCT) domain Avi_2876 PF01653 NAD-dependent DNA ligase adenylation domain Avi_2876 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Avi_2876 PF03120 NAD-dependent DNA ligase OB-fold domain Avi_2876 PF12826 Helix-hairpin-helix motif Avi_2877 PF03372 Endonuclease/Exonuclease/phosphatase family Avi_2878 PF13091 PLD-like domain Avi_2878 PF13396 Avi_2878 Avi_2879 PF02463 RecF/RecN/SMC N terminal domain Avi_2880 PF13525 Outer membrane lipoprotein Avi_2881 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Avi_2882 PF00091 Tubulin/FtsZ family, GTPase domain Avi_2882 PF12327 FtsZ family, C-terminal domain Avi_2884 PF02491 SHS2 domain inserted in FTSA Avi_2884 PF14450 Cell division protein FtsA Avi_2885 PF03799 Cell division protein FtsQ Avi_2885 PF08478 POTRA domain, FtsQ-type Avi_2887 PF01820 D-ala D-ala ligase N-terminus Avi_2887 PF07478 D-ala D-ala ligase C-terminus Avi_2888 PF00083 Sugar (and other) transporter Avi_2889 PF01565 FAD binding domain Avi_2889 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Avi_2890 PF01225 Mur ligase family, catalytic domain Avi_2890 PF02875 Mur ligase family, glutamate ligase domain Avi_2890 PF08245 Mur ligase middle domain Avi_2891 PF03033 Glycosyltransferase family 28 N-terminal domain Avi_2891 PF04101 Glycosyltransferase family 28 C-terminal domain Avi_2892 PF01098 Avi_2892 Avi_2893 PF08245 Mur ligase middle domain Avi_2894 PF00953 Glycosyl transferase family 4 Avi_2894 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Avi_2895 PF01225 Mur ligase family, catalytic domain Avi_2895 PF02875 Mur ligase family, glutamate ligase domain Avi_2895 PF08245 Mur ligase middle domain Avi_2896 PF01225 Mur ligase family, catalytic domain Avi_2896 PF02875 Mur ligase family, glutamate ligase domain Avi_2896 PF08245 Mur ligase middle domain Avi_2897 PF00905 Penicillin binding protein transpeptidase domain Avi_2897 PF03717 Penicillin-binding Protein dimerisation domain Avi_2899 PF02381 MraZ protein Avi_2900 PF01795 MraW methylase family Avi_2901 PF01266 FAD dependent oxidoreductase Avi_2904 PF01464 Transglycosylase SLT domain Avi_2906 PF01471 Putative peptidoglycan binding domain Avi_2906 PF01510 N-acetylmuramoyl-L-alanine amidase Avi_2908 PF00226 DnaJ domain Avi_2908 PF05099 Tellurite resistance protein TerB Avi_2909 PF00365 Phosphofructokinase Avi_2912 PF01464 Transglycosylase SLT domain Avi_2913 PF00144 Beta-lactamase Avi_2914 PF11899 Avi_2914 Avi_2916 PF13489 Methyltransferase domain Avi_2919 PF01183 Glycosyl hydrolases family 25 Avi_2920 PF01471 Putative peptidoglycan binding domain Avi_2920 PF13406 Transglycosylase SLT domain Avi_2922 PF00857 Isochorismatase family Avi_2923 PF01965 DJ-1/PfpI family Avi_2923 PF12833 Helix-turn-helix domain Avi_2925 PF02219 Methylenetetrahydrofolate reductase Avi_2926 PF01022 Bacterial regulatory protein, arsR family Avi_2926 PF08241 Methyltransferase domain Avi_2927 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2927 PF08376 Nitrate and nitrite sensing Avi_2928 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2928 PF00672 HAMP domain Avi_2929 PF00005 ABC transporter Avi_2929 PF12848 ABC transporter Avi_2930 PF00445 Ribonuclease T2 family Avi_2931 PF12146 Putative lysophospholipase Avi_2932 PF00892 EamA-like transporter family Avi_2933 PF00205 Thiamine pyrophosphate enzyme, central domain Avi_2933 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Avi_2933 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Avi_2934 PF01047 MarR family Avi_2935 PF02627 Carboxymuconolactone decarboxylase family Avi_2936 PF01042 Endoribonuclease L-PSP Avi_2938 PF04273 Putative phosphatase (DUF442) Avi_2941 PF14486 Domain of unknown function (DUF4432) Avi_2943 PF01471 Putative peptidoglycan binding domain Avi_2943 PF03734 L,D-transpeptidase catalytic domain Avi_2944 PF07015 VirC1 protein Avi_2945 PF00465 Iron-containing alcohol dehydrogenase Avi_2946 PF13520 Amino acid permease Avi_2948 PF13343 Bacterial extracellular solute-binding protein Avi_2949 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2950 PF00528 Binding-protein-dependent transport system inner membrane component Avi_2951 PF00005 ABC transporter Avi_2951 PF08402 TOBE domain Avi_2952 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_2952 PF08447 PAS fold Avi_2954 PF13672 Protein phosphatase 2C Avi_2955 PF00155 Aminotransferase class I and II Avi_2957 PF00196 Bacterial regulatory proteins, luxR family Avi_2957 PF03472 Autoinducer binding domain Avi_2958 PF13560 Helix-turn-helix domain Avi_2960 PF01757 Avi_2960 Avi_2961 PF00583 Acetyltransferase (GNAT) family Avi_2962 PF00376 MerR family regulatory protein Avi_2962 PF09278 MerR, DNA binding Avi_2963 PF01063 Aminotransferase class IV Avi_2966 PF00809 Pterin binding enzyme Avi_2966 PF02310 B12 binding domain Avi_2966 PF02574 Homocysteine S-methyltransferase Avi_2966 PF02607 B12 binding domain Avi_2966 PF02965 Vitamin B12 dependent methionine synthase, activation domain Avi_2967 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Avi_2972 PF00565 Staphylococcal nuclease homologue Avi_2975 PF00127 Copper binding proteins, plastocyanin/azurin family Avi_2977 PF00155 Aminotransferase class I and II Avi_2977 PF00392 Bacterial regulatory proteins, gntR family Avi_2978 PF00892 EamA-like transporter family Avi_2979 PF13505 Outer membrane protein beta-barrel domain Avi_2980 PF04402 Protein of unknown function (DUF541) Avi_2985 PF00877 NlpC/P60 family Avi_2989 PF06791 Avi_2989 Avi_2990 PF08809 Avi_2990 Avi_2997 PF05069 Avi_2997 Avi_2998 PF07030 Avi_2998 Avi_3001 PF10124 Avi_3001 Avi_3003 PF10123 Avi_3003 Avi_3005 PF04233 Avi_3005 Avi_3006 PF06074 Avi_3006 Avi_3009 PF11985 Avi_3009 Avi_3011 PF10805 Avi_3011 Avi_3012 PF01258 Prokaryotic dksA/traR C4-type zinc finger Avi_3017 PF13539 D-alanyl-D-alanine carboxypeptidase Avi_3025 PF06252 Avi_3025 Avi_3030 PF11363 Avi_3030 Avi_3033 PF09077 Mu B transposition protein, C terminal Avi_3033 PF13401 AAA domain Avi_3035 PF02914 Bacteriophage Mu transposase Avi_3035 PF09039 Mu DNA binding, I gamma subdomain Avi_3035 PF09299 Mu transposase, C-terminal Avi_3038 PF02195 ParB-like nuclease domain Avi_3041 PF13693 Winged helix-turn-helix DNA-binding Avi_3042 PF14280 Avi_3042 Avi_3044 PF00665 Integrase core domain Avi_3045 PF01695 IstB-like ATP binding protein Avi_3047 PF06074 Avi_3047 Avi_3048 PF03237 Terminase-like family Avi_3048 PF17289 Avi_3048 Avi_3049 PF11985 Avi_3049 Avi_3052 PF10805 Avi_3052 Avi_3053 PF01258 Prokaryotic dksA/traR C4-type zinc finger Avi_3058 PF13539 D-alanyl-D-alanine carboxypeptidase Avi_3060 PF06252 Avi_3060 Avi_3062 PF11363 Avi_3062 Avi_3067 PF09077 Mu B transposition protein, C terminal Avi_3067 PF13401 AAA domain Avi_3068 PF02914 Bacteriophage Mu transposase Avi_3068 PF09039 Mu DNA binding, I gamma subdomain Avi_3068 PF09299 Mu transposase, C-terminal Avi_3075 PF13693 Winged helix-turn-helix DNA-binding Avi_3076 PF00717 Peptidase S24-like Avi_3076 PF01381 Helix-turn-helix Avi_3078 PF00012 Hsp70 protein Avi_3085 PF02086 D12 class N6 adenine-specific DNA methyltransferase Avi_3086 PF00313 'Cold-shock' DNA-binding domain Avi_3088 PF03275 UDP-galactopyranose mutase Avi_3088 PF13450 NAD(P)-binding Rossmann-like domain Avi_3091 PF13181 Tetratricopeptide repeat Avi_3091 PF13432 Tetratricopeptide repeat Avi_3091 PF13844 Glycosyl transferase family 41 Avi_3092 PF01244 Membrane dipeptidase (Peptidase family M19) Avi_3095 PF01894 Uncharacterised protein family UPF0047 Avi_3097 PF00563 EAL domain Avi_3097 PF00990 GGDEF domain Avi_3098 PF07700 Heme NO binding Avi_3099 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3099 PF03466 LysR substrate binding domain Avi_3100 PF01810 Avi_3100 Avi_3101 PF06059 Avi_3101 Avi_3102 PF01546 Peptidase family M20/M25/M40 Avi_3102 PF07687 Peptidase dimerisation domain Avi_3103 PF14022 Avi_3103 Avi_3104 PF00140 Sigma-70 factor, region 1 Avi_3104 PF03979 Sigma-70 factor, region 1 Avi_3104 PF04539 Sigma-70 region 3 Avi_3104 PF04542 Sigma-70 region 2 Avi_3104 PF04545 Sigma-70, region 4 Avi_3104 PF04546 Sigma-70, non-essential region Avi_3106 PF01807 CHC2 zinc finger Avi_3106 PF08275 DNA primase catalytic core, N-terminal domain Avi_3106 PF10410 DnaB-helicase binding domain of primase Avi_3106 PF13662 Toprim domain Avi_3107 PF02632 BioY family Avi_3108 PF04055 Radical SAM superfamily Avi_3108 PF06968 Biotin and Thiamin Synthesis associated domain Avi_3109 PF09424 Yqey-like protein Avi_3111 PF00117 Glutamine amidotransferase class-I Avi_3111 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Avi_3112 PF01554 MatE Avi_3113 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3113 PF03466 LysR substrate binding domain Avi_3114 PF00248 Aldo/keto reductase family Avi_3115 PF04228 Avi_3115 Avi_3116 PF00043 Glutathione S-transferase, C-terminal domain Avi_3116 PF02798 Glutathione S-transferase, N-terminal domain Avi_3120 PF08975 Domain of unknown function (DUF1868) Avi_3122 PF02142 MGS-like domain Avi_3122 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_3122 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Avi_3124 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) Avi_3127 PF01272 Transcription elongation factor, GreA/GreB, C-term Avi_3127 PF03449 Transcription elongation factor, N-terminal Avi_3128 PF00534 Glycosyl transferases group 1 Avi_3129 PF01755 Avi_3129 Avi_3135 PF03567 Sulfotransferase family Avi_3138 PF01037 AsnC family Avi_3138 PF13412 Winged helix-turn-helix DNA-binding Avi_3139 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_3141 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3141 PF03466 LysR substrate binding domain Avi_3142 PF12840 Helix-turn-helix domain Avi_3143 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Avi_3144 PF13460 NADH(P)-binding Avi_3145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3145 PF03466 LysR substrate binding domain Avi_3146 PF09954 Avi_3146 Avi_3147 PF01699 Sodium/calcium exchanger protein Avi_3149 PF10129 Avi_3149 Avi_3150 PF00155 Aminotransferase class I and II Avi_3154 PF00892 EamA-like transporter family Avi_3156 PF00313 'Cold-shock' DNA-binding domain Avi_3159 PF00753 Metallo-beta-lactamase superfamily Avi_3163 PF12802 MarR family Avi_3164 PF00072 Response regulator receiver domain Avi_3164 PF00486 Transcriptional regulatory protein, C terminal Avi_3166 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_3167 PF01588 Putative tRNA binding domain Avi_3168 PF03807 NADP oxidoreductase coenzyme F420-dependent Avi_3168 PF14748 Pyrroline-5-carboxylate reductase dimerisation Avi_3169 PF10722 Putative bacterial sensory transduction regulator Avi_3170 PF04380 Avi_3170 Avi_3171 PF01790 Avi_3171 Avi_3172 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase Avi_3173 PF02578 Multi-copper polyphenol oxidoreductase laccase Avi_3174 PF00557 Metallopeptidase family M24 Avi_3174 PF01321 Creatinase/Prolidase N-terminal domain Avi_3177 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Avi_3177 PF14572 Phosphoribosyl synthetase-associated domain Avi_3179 PF05610 Avi_3179 Avi_3181 PF00171 Aldehyde dehydrogenase family Avi_3183 PF01590 GAF domain Avi_3183 PF02954 Bacterial regulatory protein, Fis family Avi_3185 PF01386 Ribosomal L25p family Avi_3185 PF14693 Ribosomal protein TL5, C-terminal domain Avi_3187 PF00563 EAL domain Avi_3187 PF00672 HAMP domain Avi_3187 PF00989 PAS fold Avi_3187 PF00990 GGDEF domain Avi_3188 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_3190 PF01195 Peptidyl-tRNA hydrolase Avi_3191 PF14317 Avi_3191 Avi_3192 PF00583 Acetyltransferase (GNAT) family Avi_3193 PF02617 ATP-dependent Clp protease adaptor protein ClpS Avi_3194 PF01926 50S ribosome-binding GTPase Avi_3194 PF06071 Protein of unknown function (DUF933) Avi_3196 PF01575 MaoC like domain Avi_3197 PF01575 MaoC like domain Avi_3198 PF00255 Glutathione peroxidase Avi_3200 PF01909 Nucleotidyltransferase domain Avi_3200 PF05168 HEPN domain Avi_3201 PF00156 Phosphoribosyl transferase domain Avi_3203 PF02167 Cytochrome C1 family Avi_3204 PF00032 Cytochrome b(C-terminal)/b6/petD Avi_3204 PF00033 Cytochrome b(N-terminal)/b6/petB Avi_3205 PF00355 Rieske [2Fe-2S] domain Avi_3205 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Avi_3208 PF00005 ABC transporter Avi_3208 PF00664 ABC transporter transmembrane region Avi_3210 PF00583 Acetyltransferase (GNAT) family Avi_3213 PF00005 ABC transporter Avi_3213 PF00664 ABC transporter transmembrane region Avi_3216 PF00588 SpoU rRNA Methylase family Avi_3219 PF00669 Bacterial flagellin N-terminal helical region Avi_3219 PF00700 Bacterial flagellin C-terminal helical region Avi_3221 PF01218 Coproporphyrinogen III oxidase Avi_3226 PF01743 Poly A polymerase head domain Avi_3226 PF12627 Probable RNA and SrmB- binding site of polymerase A Avi_3227 PF00293 NUDIX domain Avi_3228 PF06938 Protein of unknown function (DUF1285) Avi_3229 PF07726 ATPase family associated with various cellular activities (AAA) Avi_3231 PF01882 Avi_3231 Avi_3232 PF07584 Avi_3232 Avi_3232 PF13709 Domain of unknown function (DUF4159) Avi_3234 PF13787 Avi_3234 Avi_3235 PF13673 Acetyltransferase (GNAT) domain Avi_3236 PF13673 Acetyltransferase (GNAT) domain Avi_3238 PF00753 Metallo-beta-lactamase superfamily Avi_3239 PF00583 Acetyltransferase (GNAT) family Avi_3241 PF13409 Glutathione S-transferase, N-terminal domain Avi_3241 PF13410 Glutathione S-transferase, C-terminal domain Avi_3242 PF00293 NUDIX domain Avi_3243 PF00149 Calcineurin-like phosphoesterase Avi_3244 PF00574 Clp protease Avi_3247 PF03594 Avi_3247 Avi_3249 PF00682 HMGL-like Avi_3249 PF08502 LeuA allosteric (dimerisation) domain Avi_3250 PF01037 AsnC family Avi_3250 PF13404 AsnC-type helix-turn-helix domain Avi_3251 PF03435 Saccharopine dehydrogenase Avi_3251 PF16653 Avi_3251 Avi_3254 PF05954 Phage late control gene D protein (GPD) Avi_3257 PF05488 PAAR motif Avi_3258 PF09037 Stf0 sulphotransferase Avi_3259 PF00117 Glutamine amidotransferase class-I Avi_3259 PF00425 chorismate binding enzyme Avi_3259 PF04715 Anthranilate synthase component I, N terminal region Avi_3260 PF00583 Acetyltransferase (GNAT) family Avi_3261 PF01545 Cation efflux family Avi_3261 PF16916 Avi_3261 Avi_3262 PF14489 QueF-like protein Avi_3266 PF09849 Avi_3266 Avi_3268 PF04955 Avi_3268 Avi_3269 PF02696 Avi_3269 Avi_3270 PF06904 Avi_3270 Avi_3271 PF00593 TonB dependent receptor Avi_3271 PF07715 TonB-dependent Receptor Plug Domain Avi_3272 PF01268 Formate--tetrahydrofolate ligase Avi_3273 PF00196 Bacterial regulatory proteins, luxR family Avi_3273 PF03472 Autoinducer binding domain Avi_3275 PF08447 PAS fold Avi_3276 PF10095 Avi_3276 Avi_3277 PF00265 Thymidine kinase Avi_3281 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Avi_3282 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3283 PF00005 ABC transporter Avi_3284 PF13883 Pyridoxamine 5'-phosphate oxidase Avi_3285 PF01022 Bacterial regulatory protein, arsR family Avi_3287 PF00202 Aminotransferase class-III Avi_3294 PF13458 Periplasmic binding protein Avi_3295 PF01263 Aldose 1-epimerase Avi_3296 PF07931 Chloramphenicol phosphotransferase-like protein Avi_3297 PF01979 Amidohydrolase family Avi_3297 PF13382 Adenine deaminase C-terminal domain Avi_3298 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Avi_3299 PF06769 Plasmid encoded toxin Txe Avi_3300 PF00128 Alpha amylase, catalytic domain Avi_3300 PF11941 Domain of unknown function (DUF3459) Avi_3301 PF13439 Glycosyltransferase Family 4 Avi_3301 PF13692 Glycosyl transferases group 1 Avi_3302 PF01926 50S ribosome-binding GTPase Avi_3302 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Avi_3303 PF09976 Tetratricopeptide repeat Avi_3305 PF07298 Avi_3305 Avi_3309 PF05992 Avi_3309 Avi_3310 PF06779 Avi_3310 Avi_3313 PF00557 Metallopeptidase family M24 Avi_3314 PF00296 Luciferase-like monooxygenase Avi_3316 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Avi_3316 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Avi_3319 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_3320 PF00111 2Fe-2S iron-sulfur cluster binding domain Avi_3320 PF00941 FAD binding domain in molybdopterin dehydrogenase Avi_3320 PF01799 [2Fe-2S] binding domain Avi_3320 PF03450 CO dehydrogenase flavoprotein C-terminal domain Avi_3321 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Avi_3321 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Avi_3322 PF02625 XdhC and CoxI family Avi_3322 PF13478 XdhC Rossmann domain Avi_3323 PF13432 Tetratricopeptide repeat Avi_3323 PF13469 Sulfotransferase family Avi_3323 PF14559 Tetratricopeptide repeat Avi_3324 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3324 PF03466 LysR substrate binding domain Avi_3325 PF06181 Avi_3325 Avi_3326 PF01979 Amidohydrolase family Avi_3327 PF09084 NMT1/THI5 like Avi_3328 PF00005 ABC transporter Avi_3330 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3331 PF00764 Arginosuccinate synthase Avi_3332 PF01037 AsnC family Avi_3332 PF13412 Winged helix-turn-helix DNA-binding Avi_3334 PF11455 Avi_3334 Avi_3335 PF02452 PemK-like protein Avi_3336 PF00512 His Kinase A (phospho-acceptor) domain Avi_3336 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_3336 PF08521 Avi_3336 Avi_3337 PF00072 Response regulator receiver domain Avi_3337 PF00486 Transcriptional regulatory protein, C terminal Avi_3339 PF12850 Calcineurin-like phosphoesterase superfamily domain Avi_3340 PF00576 HIUase/Transthyretin family Avi_3341 PF04115 Ureidoglycolate hydrolase Avi_3342 PF00501 AMP-binding enzyme Avi_3342 PF00550 Phosphopantetheine attachment site Avi_3342 PF00668 Condensation domain Avi_3342 PF00975 Thioesterase domain Avi_3342 PF13193 AMP-binding enzyme C-terminal domain Avi_3344 PF00120 Glutamine synthetase, catalytic domain Avi_3344 PF03951 Glutamine synthetase, beta-Grasp domain Avi_3346 PF10931 Avi_3346 Avi_3347 PF09349 OHCU decarboxylase Avi_3348 PF00107 Zinc-binding dehydrogenase Avi_3348 PF08240 Alcohol dehydrogenase GroES-like domain Avi_3350 PF06186 Avi_3350 Avi_3352 PF05532 CsbD-like Avi_3353 PF00990 GGDEF domain Avi_3353 PF02743 Cache domain Avi_3355 PF01522 Polysaccharide deacetylase Avi_3356 PF06299 Avi_3356 Avi_3358 PF01266 FAD dependent oxidoreductase Avi_3359 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Avi_3360 PF00072 Response regulator receiver domain Avi_3360 PF00512 His Kinase A (phospho-acceptor) domain Avi_3360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_3360 PF08448 PAS fold Avi_3360 PF12860 Avi_3360 Avi_3360 PF13188 PAS domain Avi_3362 PF00270 DEAD/DEAH box helicase Avi_3362 PF00271 Helicase conserved C-terminal domain Avi_3364 PF05199 GMC oxidoreductase Avi_3366 PF00464 Serine hydroxymethyltransferase Avi_3369 PF01638 HxlR-like helix-turn-helix Avi_3370 PF00881 Nitroreductase family Avi_3371 PF07366 SnoaL-like polyketide cyclase Avi_3374 PF00817 impB/mucB/samB family Avi_3374 PF11799 impB/mucB/samB family C-terminal domain Avi_3375 PF06568 Avi_3375 Avi_3376 PF00929 Exonuclease Avi_3377 PF01276 Orn/Lys/Arg decarboxylase, major domain Avi_3377 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Avi_3377 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Avi_3378 PF13420 Acetyltransferase (GNAT) domain Avi_3380 PF13665 Avi_3380 Avi_3381 PF11876 Avi_3381 Avi_3382 PF11876 Avi_3382 Avi_3383 PF11876 Avi_3383 Avi_3385 PF13665 Avi_3385 Avi_3387 PF09937 Avi_3387 Avi_3392 PF05954 Phage late control gene D protein (GPD) Avi_3394 PF04233 Avi_3394 Avi_3402 PF01695 IstB-like ATP binding protein Avi_3403 PF00665 Integrase core domain Avi_3404 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Avi_3404 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Avi_3407 PF03050 Avi_3407 Avi_3407 PF13005 Avi_3407 Avi_3407 PF13007 Avi_3407 Avi_3407 PF13817 Avi_3407 Avi_3408 PF05717 Avi_3408 Avi_3409 PF01527 Transposase Avi_3411 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Avi_3411 PF06155 Protein of unknown function (DUF971) Avi_3412 PF13714 Phosphoenolpyruvate phosphomutase Avi_3414 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Avi_3414 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Avi_3415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3415 PF03466 LysR substrate binding domain Avi_3416 PF00892 EamA-like transporter family Avi_3418 PF00440 Bacterial regulatory proteins, tetR family Avi_3420 PF02357 Transcription termination factor nusG Avi_3428 PF00589 Phage integrase family Avi_3429 PF01047 MarR family Avi_3432 PF00107 Zinc-binding dehydrogenase Avi_3432 PF08240 Alcohol dehydrogenase GroES-like domain Avi_3433 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3433 PF03466 LysR substrate binding domain Avi_3435 PF01841 Transglutaminase-like superfamily Avi_3435 PF08379 Avi_3435 Avi_3436 PF04168 Avi_3436 Avi_3437 PF14403 Avi_3437 Avi_3439 PF00326 Prolyl oligopeptidase family Avi_3440 PF00239 Resolvase, N terminal domain Avi_3444 PF01152 Bacterial-like globin Avi_3445 PF04241 Avi_3445 Avi_3447 PF10087 Avi_3447 Avi_3448 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_3448 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Avi_3449 PF01180 Dihydroorotate dehydrogenase Avi_3449 PF14697 4Fe-4S dicluster domain Avi_3451 PF00563 EAL domain Avi_3451 PF00990 GGDEF domain Avi_3451 PF08447 PAS fold Avi_3452 PF00892 EamA-like transporter family Avi_3453 PF00440 Bacterial regulatory proteins, tetR family Avi_3453 PF08362 YcdC-like protein, C-terminal region Avi_3455 PF01546 Peptidase family M20/M25/M40 Avi_3455 PF07687 Peptidase dimerisation domain Avi_3456 PF04480 Protein of unknown function (DUF559) Avi_3457 PF01979 Amidohydrolase family Avi_3458 PF00005 ABC transporter Avi_3459 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3460 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3461 PF09084 NMT1/THI5 like Avi_3463 PF16576 Avi_3463 Avi_3464 PF00873 AcrB/AcrD/AcrF family Avi_3466 PF00027 Cyclic nucleotide-binding domain Avi_3466 PF13545 Crp-like helix-turn-helix domain Avi_3467 PF00753 Metallo-beta-lactamase superfamily Avi_3468 PF02492 CobW/HypB/UreG, nucleotide-binding domain Avi_3469 PF01730 UreF Avi_3470 PF02814 UreE urease accessory protein, N-terminal domain Avi_3470 PF05194 UreE urease accessory protein, C-terminal domain Avi_3471 PF00990 GGDEF domain Avi_3473 PF08534 Redoxin Avi_3475 PF00534 Glycosyl transferases group 1 Avi_3477 PF00449 Urease alpha-subunit, N-terminal domain Avi_3477 PF01979 Amidohydrolase family Avi_3481 PF07007 Protein of unknown function (DUF1311) Avi_3482 PF00699 Urease beta subunit Avi_3484 PF06906 Avi_3484 Avi_3485 PF00547 Urease, gamma subunit Avi_3486 PF01774 UreD urease accessory protein Avi_3487 PF10503 Esterase PHB depolymerase Avi_3489 PF00005 ABC transporter Avi_3490 PF00005 ABC transporter Avi_3490 PF12399 Branched-chain amino acid ATP-binding cassette transporter Avi_3491 PF02653 Avi_3491 Avi_3492 PF02653 Avi_3492 Avi_3494 PF13433 Periplasmic binding protein domain Avi_3496 PF00072 Response regulator receiver domain Avi_3496 PF00360 Phytochrome region Avi_3496 PF01590 GAF domain Avi_3496 PF07536 Avi_3496 Avi_3496 PF08446 PAS fold Avi_3497 PF05118 Aspartyl/Asparaginyl beta-hydroxylase Avi_3498 PF00072 Response regulator receiver domain Avi_3498 PF00512 His Kinase A (phospho-acceptor) domain Avi_3498 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_3499 PF00072 Response regulator receiver domain Avi_3499 PF00196 Bacterial regulatory proteins, luxR family Avi_3501 PF13521 AAA domain Avi_3503 PF02452 PemK-like protein Avi_3506 PF03776 Septum formation topological specificity factor MinE Avi_3507 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Avi_3508 PF03775 Septum formation inhibitor MinC, C-terminal domain Avi_3510 PF13458 Periplasmic binding protein Avi_3512 PF00005 ABC transporter Avi_3513 PF00005 ABC transporter Avi_3513 PF12399 Branched-chain amino acid ATP-binding cassette transporter Avi_3514 PF02653 Avi_3514 Avi_3514 PF11862 Avi_3514 Avi_3515 PF02653 Avi_3515 Avi_3517 PF00440 Bacterial regulatory proteins, tetR family Avi_3518 PF07690 Major Facilitator Superfamily Avi_3519 PF01583 Adenylylsulphate kinase Avi_3520 PF00459 Inositol monophosphatase family Avi_3522 PF10983 Avi_3522 Avi_3523 PF02397 Avi_3523 Avi_3524 PF06627 Protein of unknown function (DUF1153) Avi_3527 PF00072 Response regulator receiver domain Avi_3527 PF00486 Transcriptional regulatory protein, C terminal Avi_3528 PF00072 Response regulator receiver domain Avi_3529 PF10090 Uncharacterized protein conserved in bacteria (DUF2328) Avi_3530 PF06577 Avi_3530 Avi_3534 PF00588 SpoU rRNA Methylase family Avi_3536 PF00849 RNA pseudouridylate synthase Avi_3536 PF01479 S4 domain Avi_3537 PF01266 FAD dependent oxidoreductase Avi_3538 PF00140 Sigma-70 factor, region 1 Avi_3538 PF04542 Sigma-70 region 2 Avi_3538 PF04545 Sigma-70, region 4 Avi_3539 PF15593 Avi_3539 Avi_3540 PF02040 Avi_3540 Avi_3541 PF07690 Major Facilitator Superfamily Avi_3544 PF00709 Adenylosuccinate synthetase Avi_3545 PF00892 EamA-like transporter family Avi_3546 PF00149 Calcineurin-like phosphoesterase Avi_3547 PF02633 Creatinine amidohydrolase Avi_3548 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3548 PF03466 LysR substrate binding domain Avi_3549 PF09084 NMT1/THI5 like Avi_3551 PF00005 ABC transporter Avi_3552 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3553 PF07969 Amidohydrolase family Avi_3554 PF01565 FAD binding domain Avi_3555 PF02525 Flavodoxin-like fold Avi_3557 PF06823 Avi_3557 Avi_3558 PF01042 Endoribonuclease L-PSP Avi_3559 PF00171 Aldehyde dehydrogenase family Avi_3560 PF03167 Uracil DNA glycosylase superfamily Avi_3561 PF03328 HpcH/HpaI aldolase/citrate lyase family Avi_3563 PF04198 Putative sugar-binding domain Avi_3564 PF01644 Avi_3564 Avi_3565 PF07394 Avi_3565 Avi_3566 PF08811 Avi_3566 Avi_3567 PF01547 Bacterial extracellular solute-binding protein Avi_3568 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3569 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3570 PF00005 ABC transporter Avi_3570 PF08402 TOBE domain Avi_3571 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_3572 PF01232 Mannitol dehydrogenase Rossmann domain Avi_3572 PF08125 Mannitol dehydrogenase C-terminal domain Avi_3573 PF13419 Haloacid dehalogenase-like hydrolase Avi_3574 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Avi_3574 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Avi_3576 PF03054 tRNA methyl transferase Avi_3577 PF00593 TonB dependent receptor Avi_3577 PF07715 TonB-dependent Receptor Plug Domain Avi_3578 PF04828 Glutathione-dependent formaldehyde-activating enzyme Avi_3579 PF01032 FecCD transport family Avi_3580 PF01497 Periplasmic binding protein Avi_3581 PF00005 ABC transporter Avi_3583 PF12833 Helix-turn-helix domain Avi_3585 PF00593 TonB dependent receptor Avi_3585 PF07715 TonB-dependent Receptor Plug Domain Avi_3586 PF17038 Avi_3586 Avi_3590 PF04280 Tim44-like domain Avi_3592 PF02322 Avi_3592 Avi_3593 PF01654 Avi_3593 Avi_3595 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Avi_3595 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Avi_3596 PF00266 Aminotransferase class-V Avi_3598 PF07681 Avi_3598 Avi_3600 PF04116 Avi_3600 Avi_3602 PF13505 Outer membrane protein beta-barrel domain Avi_3603 PF00296 Luciferase-like monooxygenase Avi_3604 PF02075 Crossover junction endodeoxyribonuclease RuvC Avi_3605 PF01330 RuvA N terminal domain Avi_3605 PF07499 RuvA, C-terminal domain Avi_3605 PF14520 Helix-hairpin-helix domain Avi_3606 PF15937 Avi_3606 Avi_3609 PF05491 Holliday junction DNA helicase ruvB C-terminus Avi_3609 PF05496 Holliday junction DNA helicase ruvB N-terminus Avi_3610 PF00149 Calcineurin-like phosphoesterase Avi_3611 PF00293 NUDIX domain Avi_3612 PF00293 NUDIX domain Avi_3614 PF05163 DinB family Avi_3616 PF03061 Thioesterase superfamily Avi_3618 PF01618 Avi_3618 Avi_3619 PF02472 Biopolymer transport protein ExbD/TolR Avi_3621 PF04052 TolB amino-terminal domain Avi_3621 PF07676 WD40-like Beta Propeller Repeat Avi_3622 PF00691 OmpA family Avi_3624 PF13174 Tetratricopeptide repeat Avi_3624 PF13432 Tetratricopeptide repeat Avi_3626 PF01171 PP-loop family Avi_3627 PF00004 ATPase family associated with various cellular activities (AAA) Avi_3627 PF01434 Peptidase family M41 Avi_3627 PF06480 FtsH Extracellular Avi_3629 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Avi_3629 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Avi_3629 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Avi_3629 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Avi_3631 PF01709 Transcriptional regulator Avi_3632 PF16242 Avi_3632 Avi_3633 PF13483 Beta-lactamase superfamily domain Avi_3634 PF00999 Sodium/hydrogen exchanger family Avi_3637 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Avi_3637 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Avi_3638 PF00456 Transketolase, thiamine diphosphate binding domain Avi_3638 PF02779 Transketolase, pyrimidine binding domain Avi_3638 PF02780 Transketolase, C-terminal domain Avi_3640 PF13747 Avi_3640 Avi_3642 PF05164 Cell division protein ZapA Avi_3644 PF04299 Putative FMN-binding domain Avi_3647 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_3647 PF00672 HAMP domain Avi_3647 PF17201 Avi_3647 Avi_3649 PF01812 5-formyltetrahydrofolate cyclo-ligase family Avi_3650 PF13277 YmdB-like protein Avi_3651 PF00162 Phosphoglycerate kinase Avi_3652 PF00274 Fructose-bisphosphate aldolase class-I Avi_3655 PF00571 CBS domain Avi_3655 PF04982 Avi_3655 Avi_3661 PF07690 Major Facilitator Superfamily Avi_3662 PF06698 Avi_3662 Avi_3663 PF07323 Protein of unknown function (DUF1465) Avi_3665 PF01197 Ribosomal protein L31 Avi_3667 PF00005 ABC transporter Avi_3667 PF00664 ABC transporter transmembrane region Avi_3668 PF00890 FAD binding domain Avi_3670 PF00691 OmpA family Avi_3672 PF00459 Inositol monophosphatase family Avi_3674 PF08238 Sel1 repeat Avi_3675 PF02581 Thiamine monophosphate synthase/TENI Avi_3677 PF01925 Avi_3677 Avi_3678 PF01022 Bacterial regulatory protein, arsR family Avi_3680 PF04325 Protein of unknown function (DUF465) Avi_3681 PF04325 Protein of unknown function (DUF465) Avi_3683 PF00731 AIR carboxylase Avi_3684 PF02222 ATP-grasp domain Avi_3686 PF00444 Ribosomal protein L36 Avi_3687 PF13432 Tetratricopeptide repeat Avi_3689 PF00561 alpha/beta hydrolase fold Avi_3690 PF00224 Pyruvate kinase, barrel domain Avi_3690 PF02887 Pyruvate kinase, alpha/beta domain Avi_3691 PF06282 Avi_3691 Avi_3692 PF05013 N-formylglutamate amidohydrolase Avi_3693 PF06844 Protein of unknown function (DUF1244) Avi_3695 PF10073 Avi_3695 Avi_3698 PF05951 Avi_3698 Avi_3699 PF00072 Response regulator receiver domain Avi_3699 PF00158 Sigma-54 interaction domain Avi_3699 PF02954 Bacterial regulatory protein, Fis family Avi_3702 PF01432 Peptidase family M3 Avi_3702 PF08439 Oligopeptidase F Avi_3703 PF00425 chorismate binding enzyme Avi_3704 PF01063 Aminotransferase class IV Avi_3707 PF03435 Saccharopine dehydrogenase Avi_3707 PF16653 Avi_3707 Avi_3711 PF00149 Calcineurin-like phosphoesterase Avi_3711 PF01476 LysM domain Avi_3711 PF02872 5'-nucleotidase, C-terminal domain Avi_3712 PF00762 Ferrochelatase Avi_3714 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_3714 PF00672 HAMP domain Avi_3716 PF04055 Radical SAM superfamily Avi_3716 PF13394 4Fe-4S single cluster domain Avi_3717 PF01242 6-pyruvoyl tetrahydropterin synthase Avi_3719 PF06508 Queuosine biosynthesis protein QueC Avi_3720 PF01145 SPFH domain / Band 7 family Avi_3721 PF01957 NfeD-like C-terminal, partner-binding Avi_3722 PF00571 CBS domain Avi_3722 PF01380 SIS domain Avi_3723 PF10082 Avi_3723 Avi_3724 PF00483 Nucleotidyl transferase Avi_3727 PF01471 Putative peptidoglycan binding domain Avi_3727 PF13406 Transglycosylase SLT domain Avi_3728 PF04311 Avi_3728 Avi_3729 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_3729 PF00672 HAMP domain Avi_3730 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_3730 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Avi_3732 PF01850 PIN domain Avi_3734 PF00310 Glutamine amidotransferases class-II Avi_3734 PF01493 GXGXG motif Avi_3734 PF01645 Conserved region in glutamate synthase Avi_3734 PF04898 Glutamate synthase central domain Avi_3736 PF01212 Beta-eliminating lyase Avi_3739 PF00011 Hsp20/alpha crystallin family Avi_3740 PF12146 Putative lysophospholipase Avi_3743 PF00459 Inositol monophosphatase family Avi_3744 PF05013 N-formylglutamate amidohydrolase Avi_3746 PF00072 Response regulator receiver domain Avi_3749 PF00924 Mechanosensitive ion channel Avi_3751 PF00483 Nucleotidyl transferase Avi_3751 PF01050 Mannose-6-phosphate isomerase Avi_3752 PF01841 Transglutaminase-like superfamily Avi_3752 PF08379 Avi_3752 Avi_3752 PF09899 Avi_3752 Avi_3754 PF04168 Avi_3754 Avi_3754 PF14403 Avi_3754 Avi_3755 PF01841 Transglutaminase-like superfamily Avi_3755 PF08379 Avi_3755 Avi_3756 PF00092 von Willebrand factor type A domain Avi_3756 PF13400 Avi_3756 Avi_3758 PF00343 Carbohydrate phosphorylase Avi_3760 PF00128 Alpha amylase, catalytic domain Avi_3760 PF02806 Alpha amylase, C-terminal all-beta domain Avi_3760 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Avi_3761 PF00483 Nucleotidyl transferase Avi_3762 PF00534 Glycosyl transferases group 1 Avi_3762 PF08323 Starch synthase catalytic domain Avi_3763 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Avi_3763 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Avi_3763 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Avi_3763 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Avi_3764 PF00128 Alpha amylase, catalytic domain Avi_3764 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Avi_3765 PF01575 MaoC like domain Avi_3766 PF10094 Avi_3766 Avi_3768 PF06808 Avi_3768 Avi_3769 PF04290 Avi_3769 Avi_3770 PF07835 Bacterial aa3 type cytochrome c oxidase subunit IV Avi_3772 PF00515 Tetratricopeptide repeat Avi_3772 PF13181 Tetratricopeptide repeat Avi_3774 PF01266 FAD dependent oxidoreductase Avi_3775 PF01165 Ribosomal protein S21 Avi_3776 PF04267 Sarcosine oxidase, delta subunit family Avi_3777 PF01571 Aminomethyltransferase folate-binding domain Avi_3777 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_3777 PF08669 Glycine cleavage T-protein C-terminal barrel domain Avi_3777 PF13510 2Fe-2S iron-sulfur cluster binding domain Avi_3778 PF04268 Sarcosine oxidase, gamma subunit family Avi_3779 PF01370 NAD dependent epimerase/dehydratase family Avi_3780 PF01638 HxlR-like helix-turn-helix Avi_3781 PF15738 Avi_3781 Avi_3782 PF04221 RelB antitoxin Avi_3784 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Avi_3785 PF05016 Plasmid stabilisation system protein Avi_3787 PF04365 Protein of unknown function (DUF497) Avi_3788 PF13560 Helix-turn-helix domain Avi_3789 PF03480 Bacterial extracellular solute-binding protein, family 7 Avi_3790 PF07722 Peptidase C26 Avi_3791 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Avi_3791 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Avi_3792 PF00356 Bacterial regulatory proteins, lacI family Avi_3792 PF13377 Periplasmic binding protein-like domain Avi_3793 PF12802 MarR family Avi_3794 PF02633 Creatinine amidohydrolase Avi_3796 PF02492 CobW/HypB/UreG, nucleotide-binding domain Avi_3796 PF07683 Cobalamin synthesis protein cobW C-terminal domain Avi_3799 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_3799 PF00672 HAMP domain Avi_3800 PF03922 OmpW family Avi_3801 PF04185 Phosphoesterase family Avi_3802 PF00034 Cytochrome c Avi_3802 PF03150 Di-haem cytochrome c peroxidase Avi_3804 PF00583 Acetyltransferase (GNAT) family Avi_3806 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Avi_3806 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Avi_3808 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3808 PF03466 LysR substrate binding domain Avi_3809 PF06226 Avi_3809 Avi_3811 PF03824 Avi_3811 Avi_3813 PF13302 Acetyltransferase (GNAT) domain Avi_3814 PF04391 Avi_3814 Avi_3816 PF01081 KDPG and KHG aldolase Avi_3819 PF01928 CYTH domain Avi_3820 PF05235 CHAD domain Avi_3821 PF08279 HTH domain Avi_3821 PF13280 Avi_3821 Avi_3822 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_3823 PF00581 Rhodanese-like domain Avi_3825 PF00563 EAL domain Avi_3827 PF00232 Glycosyl hydrolase family 1 Avi_3830 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_3830 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Avi_3831 PF01261 Xylose isomerase-like TIM barrel Avi_3831 PF07582 AP endonuclease family 2 C terminus Avi_3833 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Avi_3833 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Avi_3834 PF00356 Bacterial regulatory proteins, lacI family Avi_3834 PF13407 Periplasmic binding protein domain Avi_3836 PF07690 Major Facilitator Superfamily Avi_3837 PF13437 HlyD family secretion protein Avi_3837 PF13533 Biotin-lipoyl like Avi_3838 PF00440 Bacterial regulatory proteins, tetR family Avi_3838 PF14246 AefR-like transcriptional repressor, C-terminal region Avi_3839 PF03741 Avi_3839 Avi_3841 PF07264 Etoposide-induced protein 2 Avi_3842 PF00633 Helix-hairpin-helix motif Avi_3842 PF00730 HhH-GPD superfamily base excision DNA repair protein Avi_3842 PF10576 Iron-sulfur binding domain of endonuclease III Avi_3844 PF10003 Avi_3844 Avi_3845 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Avi_3845 PF12833 Helix-turn-helix domain Avi_3848 PF03403 Platelet-activating factor acetylhydrolase, isoform II Avi_3849 PF04198 Putative sugar-binding domain Avi_3849 PF13384 Homeodomain-like domain Avi_3850 PF00923 Transaldolase Avi_3854 PF00892 EamA-like transporter family Avi_3856 PF00152 tRNA synthetases class II (D, K and N) Avi_3856 PF01336 OB-fold nucleic acid binding domain Avi_3858 PF00749 tRNA synthetases class I (E and Q), catalytic domain Avi_3860 PF02080 TrkA-C domain Avi_3860 PF03600 Citrate transporter Avi_3861 PF08238 Sel1 repeat Avi_3862 PF13437 HlyD family secretion protein Avi_3862 PF13533 Biotin-lipoyl like Avi_3863 PF00005 ABC transporter Avi_3863 PF00664 ABC transporter transmembrane region Avi_3863 PF03412 Peptidase C39 family Avi_3864 PF13524 Glycosyl transferases group 1 Avi_3865 PF13414 TPR repeat Avi_3865 PF13432 Tetratricopeptide repeat Avi_3866 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Avi_3866 PF13374 Tetratricopeptide repeat Avi_3866 PF13432 Tetratricopeptide repeat Avi_3870 PF06055 Avi_3870 Avi_3871 PF00005 ABC transporter Avi_3871 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_3872 PF01546 Peptidase family M20/M25/M40 Avi_3872 PF07687 Peptidase dimerisation domain Avi_3874 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_3875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_3876 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3878 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3878 PF12911 Avi_3878 Avi_3879 PF12698 ABC-2 family transporter protein Avi_3880 PF00005 ABC transporter Avi_3880 PF12698 ABC-2 family transporter protein Avi_3881 PF16576 Avi_3881 Avi_3882 PF03576 Peptidase family S58 Avi_3883 PF01979 Amidohydrolase family Avi_3884 PF00005 ABC transporter Avi_3885 PF00005 ABC transporter Avi_3886 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3886 PF12911 Avi_3886 Avi_3887 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3888 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_3889 PF01244 Membrane dipeptidase (Peptidase family M19) Avi_3890 PF00294 pfkB family carbohydrate kinase Avi_3891 PF00392 Bacterial regulatory proteins, gntR family Avi_3891 PF07729 FCD domain Avi_3892 PF02614 Glucuronate isomerase Avi_3893 PF07883 Cupin domain Avi_3894 PF04962 KduI/IolB family Avi_3895 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_3896 PF01232 Mannitol dehydrogenase Rossmann domain Avi_3896 PF08125 Mannitol dehydrogenase C-terminal domain Avi_3897 PF03786 D-mannonate dehydratase (UxuA) Avi_3898 PF04295 Avi_3898 Avi_3898 PF08666 SAF domain Avi_3899 PF02233 NAD(P) transhydrogenase beta subunit Avi_3900 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Avi_3900 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Avi_3900 PF12769 Domain of unknown function (DUF3814) Avi_3902 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3902 PF03466 LysR substrate binding domain Avi_3903 PF13407 Periplasmic binding protein domain Avi_3905 PF00005 ABC transporter Avi_3906 PF02653 Avi_3906 Avi_3909 PF00920 Dehydratase family Avi_3910 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_3912 PF00171 Aldehyde dehydrogenase family Avi_3914 PF05035 2-keto-3-deoxy-galactonokinase Avi_3915 PF01081 KDPG and KHG aldolase Avi_3917 PF04304 Avi_3917 Avi_3918 PF00892 EamA-like transporter family Avi_3919 PF00392 Bacterial regulatory proteins, gntR family Avi_3919 PF07729 FCD domain Avi_3920 PF07690 Major Facilitator Superfamily Avi_3921 PF00024 PAN domain Avi_3921 PF00207 Alpha-2-macroglobulin family Avi_3921 PF01835 MG2 domain Avi_3921 PF07703 Alpha-2-macroglobulin family N-terminal region Avi_3921 PF10569 Alpha-macro-globulin thiol-ester bond-forming region Avi_3921 PF11974 Alpha-2-macroglobulin MG1 domain Avi_3922 PF00905 Penicillin binding protein transpeptidase domain Avi_3922 PF00912 Transglycosylase Avi_3922 PF06832 Avi_3922 Avi_3923 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_3923 PF00672 HAMP domain Avi_3924 PF01370 NAD dependent epimerase/dehydratase family Avi_3925 PF04101 Glycosyltransferase family 28 C-terminal domain Avi_3926 PF00534 Glycosyl transferases group 1 Avi_3927 PF04101 Glycosyltransferase family 28 C-terminal domain Avi_3928 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3928 PF12911 Avi_3928 Avi_3929 PF00528 Binding-protein-dependent transport system inner membrane component Avi_3931 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_3932 PF00005 ABC transporter Avi_3932 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_3933 PF04488 Glycosyltransferase sugar-binding region containing DXD motif Avi_3935 PF00534 Glycosyl transferases group 1 Avi_3939 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Avi_3939 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Avi_3939 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Avi_3940 PF12692 S-adenosyl-L-methionine methyltransferase Avi_3942 PF00027 Cyclic nucleotide-binding domain Avi_3943 PF00664 ABC transporter transmembrane region Avi_3945 PF00149 Calcineurin-like phosphoesterase Avi_3945 PF12320 Type 5 capsule protein repressor C-terminal domain Avi_3946 PF13476 AAA domain Avi_3946 PF13558 Putative exonuclease SbcCD, C subunit Avi_3947 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_3949 PF01551 Peptidase family M23 Avi_3951 PF00004 ATPase family associated with various cellular activities (AAA) Avi_3951 PF02861 Clp amino terminal domain Avi_3951 PF07724 AAA domain (Cdc48 subfamily) Avi_3951 PF10431 C-terminal, D2-small domain, of ClpB protein Avi_3953 PF13763 Avi_3953 Avi_3954 PF05175 Methyltransferase small domain Avi_3955 PF00472 RF-1 domain Avi_3955 PF03462 PCRF domain Avi_3956 PF00391 PEP-utilising enzyme, mobile domain Avi_3956 PF02896 PEP-utilising enzyme, TIM barrel domain Avi_3956 PF05524 PEP-utilising enzyme, N-terminal Avi_3956 PF13185 GAF domain Avi_3957 PF00696 Amino acid kinase family Avi_3957 PF01842 ACT domain Avi_3957 PF13840 ACT domain Avi_3961 PF03706 Avi_3961 Avi_3961 PF09924 Uncharacterized conserved protein (DUF2156) Avi_3963 PF06057 Bacterial virulence protein (VirJ) Avi_3964 PF08239 Bacterial SH3 domain Avi_3965 PF13489 Methyltransferase domain Avi_3966 PF11695 Avi_3966 Avi_3967 PF06676 Avi_3967 Avi_3968 PF00795 Carbon-nitrogen hydrolase Avi_3969 PF00462 Glutaredoxin Avi_3970 PF00156 Phosphoribosyl transferase domain Avi_3971 PF08241 Methyltransferase domain Avi_3972 PF04964 Avi_3972 Avi_3976 PF00293 NUDIX domain Avi_3977 PF00583 Acetyltransferase (GNAT) family Avi_3979 PF01960 ArgJ family Avi_3981 PF13616 PPIC-type PPIASE domain Avi_3982 PF01043 SecA preprotein cross-linking domain Avi_3982 PF02810 SEC-C motif Avi_3982 PF07516 SecA Wing and Scaffold domain Avi_3982 PF07517 SecA DEAD-like domain Avi_3983 PF01943 Avi_3983 Avi_3983 PF14667 Polysaccharide biosynthesis C-terminal domain Avi_3984 PF13480 Acetyltransferase (GNAT) domain Avi_3985 PF00501 AMP-binding enzyme Avi_3985 PF13193 AMP-binding enzyme C-terminal domain Avi_3988 PF00990 GGDEF domain Avi_3989 PF13683 Avi_3989 Avi_3990 PF01636 Phosphotransferase enzyme family Avi_3993 PF00248 Aldo/keto reductase family Avi_3994 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_3994 PF03466 LysR substrate binding domain Avi_3996 PF13463 Winged helix DNA-binding domain Avi_4000 PF02600 Disulfide bond formation protein DsbB Avi_4001 PF14279 Avi_4001 Avi_4002 PF00730 HhH-GPD superfamily base excision DNA repair protein Avi_4004 PF00749 tRNA synthetases class I (E and Q), catalytic domain Avi_4005 PF03631 Avi_4005 Avi_4006 PF00106 short chain dehydrogenase Avi_4007 PF04588 Hypoxia induced protein conserved region Avi_4008 PF01923 Cobalamin adenosyltransferase Avi_4010 PF01012 Electron transfer flavoprotein domain Avi_4012 PF00766 Electron transfer flavoprotein FAD-binding domain Avi_4012 PF01012 Electron transfer flavoprotein domain Avi_4013 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_4013 PF00672 HAMP domain Avi_4015 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Avi_4015 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Avi_4016 PF08534 Redoxin Avi_4017 PF00206 Lyase Avi_4017 PF14698 Argininosuccinate lyase C-terminal Avi_4020 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Avi_4020 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Avi_4021 PF13779 Avi_4021 Avi_4023 PF00072 Response regulator receiver domain Avi_4024 PF00156 Phosphoribosyl transferase domain Avi_4027 PF00005 ABC transporter Avi_4029 PF02698 DUF218 domain Avi_4030 PF01553 Acyltransferase Avi_4031 PF04752 Avi_4031 Avi_4032 PF09898 Avi_4032 Avi_4033 PF02153 Prephenate dehydrogenase Avi_4034 PF00155 Aminotransferase class I and II Avi_4035 PF08241 Methyltransferase domain Avi_4036 PF00753 Metallo-beta-lactamase superfamily Avi_4036 PF16123 Avi_4036 Avi_4037 PF06172 Cupin superfamily (DUF985) Avi_4038 PF01292 Prokaryotic cytochrome b561 Avi_4039 PF00892 EamA-like transporter family Avi_4040 PF11306 Protein of unknown function (DUF3108) Avi_4041 PF00830 Ribosomal L28 family Avi_4043 PF02592 Avi_4043 Avi_4044 PF13449 Esterase-like activity of phytase Avi_4045 PF06213 Avi_4045 Avi_4045 PF11775 Avi_4045 Avi_4046 PF07728 AAA domain (dynein-related subfamily) Avi_4046 PF12556 Avi_4046 Avi_4048 PF00226 DnaJ domain Avi_4050 PF01722 BolA-like protein Avi_4051 PF01761 3-dehydroquinate synthase Avi_4053 PF01202 Shikimate kinase Avi_4056 PF00589 Phage integrase family Avi_4056 PF02899 Phage integrase, N-terminal SAM-like domain Avi_4057 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Avi_4058 PF03734 L,D-transpeptidase catalytic domain Avi_4059 PF01206 Sulfurtransferase TusA Avi_4060 PF02492 CobW/HypB/UreG, nucleotide-binding domain Avi_4060 PF07683 Cobalamin synthesis protein cobW C-terminal domain Avi_4061 PF00768 D-alanyl-D-alanine carboxypeptidase Avi_4062 PF01546 Peptidase family M20/M25/M40 Avi_4062 PF07687 Peptidase dimerisation domain Avi_4064 PF01594 Avi_4064 Avi_4065 PF00196 Bacterial regulatory proteins, luxR family Avi_4066 PF00196 Bacterial regulatory proteins, luxR family Avi_4068 PF01514 Secretory protein of YscJ/FliF family Avi_4068 PF08345 Avi_4068 Avi_4071 PF03975 CheD chemotactic sensory transduction Avi_4072 PF00072 Response regulator receiver domain Avi_4073 PF00072 Response regulator receiver domain Avi_4073 PF01339 CheB methylesterase Avi_4074 PF01739 CheR methyltransferase, SAM binding domain Avi_4074 PF03705 CheR methyltransferase, all-alpha domain Avi_4076 PF01584 CheW-like domain Avi_4077 PF01584 CheW-like domain Avi_4077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_4077 PF02895 Signal transducing histidine kinase, homodimeric domain Avi_4079 PF00072 Response regulator receiver domain Avi_4080 PF13466 STAS domain Avi_4081 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_4081 PF11563 Protoglobin Avi_4083 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Avi_4083 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal Avi_4083 PF13288 DXP reductoisomerase C-terminal domain Avi_4084 PF00144 Beta-lactamase Avi_4085 PF00155 Aminotransferase class I and II Avi_4087 PF13441 Avi_4087 Avi_4088 PF01103 Surface antigen Avi_4088 PF07244 Surface antigen variable number repeat Avi_4089 PF04357 Avi_4089 Avi_4091 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_4091 PF08447 PAS fold Avi_4092 PF01584 CheW-like domain Avi_4093 PF07690 Major Facilitator Superfamily Avi_4095 PF11390 Avi_4095 Avi_4096 PF02634 FdhD/NarQ family Avi_4097 PF00037 4Fe-4S binding domain Avi_4097 PF00384 Molybdopterin oxidoreductase Avi_4097 PF01568 Molydopterin dinucleotide binding domain Avi_4097 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Avi_4097 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Avi_4097 PF13510 2Fe-2S iron-sulfur cluster binding domain Avi_4098 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Avi_4098 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Avi_4099 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin Avi_4101 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_4101 PF03466 LysR substrate binding domain Avi_4102 PF01022 Bacterial regulatory protein, arsR family Avi_4103 PF00056 lactate/malate dehydrogenase, NAD binding domain Avi_4103 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Avi_4104 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Avi_4106 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Avi_4106 PF02874 ATP synthase alpha/beta family, beta-barrel domain Avi_4107 PF00231 ATP synthase Avi_4108 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Avi_4108 PF00306 ATP synthase alpha/beta chain, C terminal domain Avi_4108 PF02874 ATP synthase alpha/beta family, beta-barrel domain Avi_4110 PF00213 ATP synthase delta (OSCP) subunit Avi_4112 PF00270 DEAD/DEAH box helicase Avi_4113 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_4113 PF02743 Cache domain Avi_4114 PF00589 Phage integrase family Avi_4114 PF02899 Phage integrase, N-terminal SAM-like domain Avi_4115 PF01963 Avi_4115 Avi_4116 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Avi_4116 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_4118 PF01810 Avi_4118 Avi_4119 PF01124 MAPEG family Avi_4121 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Avi_4121 PF00364 Biotin-requiring enzyme Avi_4121 PF02817 e3 binding domain Avi_4122 PF00676 Dehydrogenase E1 component Avi_4122 PF02779 Transketolase, pyrimidine binding domain Avi_4122 PF16078 Avi_4122 Avi_4122 PF16870 Avi_4122 Avi_4124 PF00549 CoA-ligase Avi_4124 PF02629 CoA binding domain Avi_4127 PF00549 CoA-ligase Avi_4127 PF08442 ATP-grasp domain Avi_4129 PF00056 lactate/malate dehydrogenase, NAD binding domain Avi_4129 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Avi_4130 PF03969 AFG1-like ATPase Avi_4132 PF02974 Protease inhibitor Inh Avi_4134 PF13085 2Fe-2S iron-sulfur cluster binding domain Avi_4134 PF13534 4Fe-4S dicluster domain Avi_4135 PF00890 FAD binding domain Avi_4135 PF02910 Fumarate reductase flavoprotein C-term Avi_4136 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Avi_4137 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Avi_4139 PF10294 Putative methyltransferase Avi_4141 PF01878 EVE domain Avi_4142 PF03795 YCII-related domain Avi_4143 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Avi_4143 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Avi_4144 PF00814 Glycoprotease family Avi_4145 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Avi_4145 PF03900 Porphobilinogen deaminase, C-terminal domain Avi_4146 PF02602 Uroporphyrinogen-III synthase HemD Avi_4147 PF09731 Avi_4147 Avi_4148 PF07219 Avi_4148 Avi_4149 PF05099 Tellurite resistance protein TerB Avi_4150 PF00117 Glutamine amidotransferase class-I Avi_4151 PF05977 Transmembrane secretion effector Avi_4152 PF02325 Avi_4152 Avi_4153 PF02594 Uncharacterised ACR, YggU family COG1872 Avi_4154 PF00719 Inorganic pyrophosphatase Avi_4155 PF00583 Acetyltransferase (GNAT) family Avi_4156 PF00009 Elongation factor Tu GTP binding domain Avi_4156 PF00679 Elongation factor G C-terminus Avi_4156 PF03144 Elongation factor Tu domain 2 Avi_4157 PF09423 PhoD-like phosphatase Avi_4157 PF16655 Avi_4157 Avi_4158 PF01432 Peptidase family M3 Avi_4159 PF07690 Major Facilitator Superfamily Avi_4161 PF00764 Arginosuccinate synthase Avi_4162 PF00106 short chain dehydrogenase Avi_4164 PF01810 Avi_4164 Avi_4168 PF04055 Radical SAM superfamily Avi_4172 PF06803 Avi_4172 Avi_4174 PF01329 Pterin 4 alpha carbinolamine dehydratase Avi_4176 PF02834 LigT like Phosphoesterase Avi_4178 PF13472 GDSL-like Lipase/Acylhydrolase family Avi_4180 PF00005 ABC transporter Avi_4181 PF02687 Avi_4181 Avi_4182 PF01027 Inhibitor of apoptosis-promoting Bax1 Avi_4184 PF13420 Acetyltransferase (GNAT) domain Avi_4185 PF10984 Avi_4185 Avi_4186 PF06764 Protein of unknown function (DUF1223) Avi_4187 PF00330 Aconitase family (aconitate hydratase) Avi_4187 PF00694 Aconitase C-terminal domain Avi_4188 PF00005 ABC transporter Avi_4189 PF03379 Avi_4189 Avi_4191 PF01578 Avi_4191 Avi_4192 PF04995 Avi_4192 Avi_4193 PF08534 Redoxin Avi_4194 PF10755 Avi_4194 Avi_4195 PF04279 Avi_4195 Avi_4196 PF00448 SRP54-type protein, GTPase domain Avi_4196 PF02881 SRP54-type protein, helical bundle domain Avi_4197 PF00919 Uncharacterized protein family UPF0004 Avi_4197 PF04055 Radical SAM superfamily Avi_4198 PF01678 Diaminopimelate epimerase Avi_4200 PF12706 Beta-lactamase superfamily domain Avi_4203 PF00448 SRP54-type protein, GTPase domain Avi_4203 PF02881 SRP54-type protein, helical bundle domain Avi_4203 PF02978 Signal peptide binding domain Avi_4204 PF01817 Chorismate mutase type II Avi_4205 PF00886 Ribosomal protein S16 Avi_4207 PF01782 RimM N-terminal domain Avi_4207 PF05239 PRC-barrel domain Avi_4208 PF01746 tRNA (Guanine-1)-methyltransferase Avi_4209 PF01925 Avi_4209 Avi_4210 PF01245 Ribosomal protein L19 Avi_4213 PF03929 Avi_4213 Avi_4214 PF04234 CopC domain Avi_4216 PF05425 Avi_4216 Avi_4217 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_4218 PF00528 Binding-protein-dependent transport system inner membrane component Avi_4222 PF13844 Glycosyl transferase family 41 Avi_4223 PF00330 Aconitase family (aconitate hydratase) Avi_4225 PF00248 Aldo/keto reductase family Avi_4226 PF03734 L,D-transpeptidase catalytic domain Avi_4227 PF00072 Response regulator receiver domain Avi_4227 PF00486 Transcriptional regulatory protein, C terminal Avi_4229 PF00027 Cyclic nucleotide-binding domain Avi_4231 PF01909 Nucleotidyltransferase domain Avi_4231 PF05168 HEPN domain Avi_4232 PF03372 Endonuclease/Exonuclease/phosphatase family Avi_4235 PF03548 Outer membrane lipoprotein carrier protein LolA Avi_4236 PF01580 FtsK/SpoIIIE family Avi_4236 PF09397 Ftsk gamma domain Avi_4236 PF13491 Avi_4236 Avi_4237 PF00909 Ammonium Transporter Family Avi_4239 PF00543 Nitrogen regulatory protein P-II Avi_4240 PF13622 Thioesterase-like superfamily Avi_4242 PF01494 FAD binding domain Avi_4243 PF03966 Trm112p-like protein Avi_4244 PF02190 ATP-dependent protease La (LON) domain Avi_4245 PF00085 Thioredoxin Avi_4245 PF14559 Tetratricopeptide repeat Avi_4245 PF14561 Tetratricopeptide repeat Avi_4247 PF04073 Aminoacyl-tRNA editing domain Avi_4248 PF07690 Major Facilitator Superfamily Avi_4249 PF01263 Aldose 1-epimerase Avi_4250 PF05762 VWA domain containing CoxE-like protein Avi_4251 PF00583 Acetyltransferase (GNAT) family Avi_4253 PF04204 Homoserine O-succinyltransferase Avi_4254 PF07728 AAA domain (dynein-related subfamily) Avi_4259 PF01165 Ribosomal protein S21 Avi_4260 PF04263 Thiamin pyrophosphokinase, catalytic domain Avi_4260 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain Avi_4261 PF00005 ABC transporter Avi_4261 PF16326 Avi_4261 Avi_4264 PF06472 Avi_4264 Avi_4266 PF13343 Bacterial extracellular solute-binding protein Avi_4267 PF00528 Binding-protein-dependent transport system inner membrane component Avi_4268 PF00005 ABC transporter Avi_4269 PF01435 Peptidase family M48 Avi_4270 PF04542 Sigma-70 region 2 Avi_4270 PF04545 Sigma-70, region 4 Avi_4272 PF00183 Hsp90 protein Avi_4272 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_4273 PF00210 Ferritin-like domain Avi_4276 PF04324 BFD-like [2Fe-2S] binding domain Avi_4277 PF02590 Predicted SPOUT methyltransferase Avi_4278 PF02410 Oligomerisation domain Avi_4279 PF01467 Cytidylyltransferase Avi_4280 PF00171 Aldehyde dehydrogenase family Avi_4281 PF00696 Amino acid kinase family Avi_4281 PF01472 PUA domain Avi_4282 PF01018 GTP1/OBG Avi_4282 PF01926 50S ribosome-binding GTPase Avi_4283 PF03372 Endonuclease/Exonuclease/phosphatase family Avi_4284 PF13302 Acetyltransferase (GNAT) domain Avi_4286 PF13302 Acetyltransferase (GNAT) domain Avi_4287 PF01016 Ribosomal L27 protein Avi_4288 PF00829 Ribosomal prokaryotic L21 protein Avi_4290 PF05159 Avi_4290 Avi_4291 PF05159 Avi_4291 Avi_4292 PF01808 AICARFT/IMPCHase bienzyme Avi_4292 PF02142 MGS-like domain Avi_4294 PF07940 Heparinase II/III-like protein Avi_4295 PF01029 NusB family Avi_4295 PF01189 NOL1/NOP2/sun family Avi_4296 PF01435 Peptidase family M48 Avi_4297 PF07896 Protein of unknown function (DUF1674) Avi_4299 PF01551 Peptidase family M23 Avi_4300 PF03572 Peptidase family S41 Avi_4300 PF13180 PDZ domain Avi_4301 PF04748 Divergent polysaccharide deacetylase Avi_4302 PF00293 NUDIX domain Avi_4303 PF07015 VirC1 protein Avi_4304 PF03551 Transcriptional regulator PadR-like family Avi_4305 PF08006 Avi_4305 Avi_4307 PF10988 Protein of unknown function (DUF2807) Avi_4309 PF00072 Response regulator receiver domain Avi_4309 PF01339 CheB methylesterase Avi_4310 PF01739 CheR methyltransferase, SAM binding domain Avi_4310 PF03705 CheR methyltransferase, all-alpha domain Avi_4311 PF01584 CheW-like domain Avi_4312 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_4312 PF12729 Avi_4312 Avi_4313 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_4313 PF00672 HAMP domain Avi_4313 PF12729 Avi_4313 Avi_4314 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_4314 PF00672 HAMP domain Avi_4314 PF12729 Avi_4314 Avi_4315 PF01584 CheW-like domain Avi_4316 PF01584 CheW-like domain Avi_4316 PF01627 Hpt domain Avi_4316 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_4316 PF02895 Signal transducing histidine kinase, homodimeric domain Avi_4317 PF00072 Response regulator receiver domain Avi_4318 PF13466 STAS domain Avi_4319 PF00072 Response regulator receiver domain Avi_4319 PF01966 HD domain Avi_4321 PF03486 HI0933-like protein Avi_4322 PF00171 Aldehyde dehydrogenase family Avi_4322 PF01619 Proline dehydrogenase Avi_4322 PF14850 DNA-binding domain of Proline dehydrogenase Avi_4324 PF01037 AsnC family Avi_4324 PF13412 Winged helix-turn-helix DNA-binding Avi_4327 PF01205 Uncharacterized protein family UPF0029 Avi_4327 PF09186 Domain of unknown function (DUF1949) Avi_4328 PF00106 short chain dehydrogenase Avi_4329 PF00155 Aminotransferase class I and II Avi_4330 PF00107 Zinc-binding dehydrogenase Avi_4330 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_4330 PF00550 Phosphopantetheine attachment site Avi_4330 PF00698 Acyl transferase domain Avi_4330 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_4330 PF08240 Alcohol dehydrogenase GroES-like domain Avi_4330 PF08659 KR domain Avi_4330 PF14765 Polyketide synthase dehydratase Avi_4330 PF16197 Avi_4330 Avi_4331 PF07690 Major Facilitator Superfamily Avi_4332 PF04551 GcpE protein Avi_4333 PF00691 OmpA family Avi_4333 PF13488 Avi_4333 Avi_4336 PF01810 Avi_4336 Avi_4337 PF00348 Polyprenyl synthetase Avi_4339 PF00912 Transglycosylase Avi_4340 PF13410 Glutathione S-transferase, C-terminal domain Avi_4340 PF13417 Glutathione S-transferase, N-terminal domain Avi_4342 PF01783 Ribosomal L32p protein family Avi_4343 PF05233 Avi_4343 Avi_4343 PF07879 Avi_4343 Avi_4344 PF00108 Thiolase, N-terminal domain Avi_4344 PF02803 Thiolase, C-terminal domain Avi_4345 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_4346 PF11752 Avi_4346 Avi_4347 PF00271 Helicase conserved C-terminal domain Avi_4348 PF01479 S4 domain Avi_4350 PF00037 4Fe-4S binding domain Avi_4350 PF11953 Domain of unknown function (DUF3470) Avi_4352 PF02559 CarD-like/TRCF domain Avi_4355 PF08410 Avi_4355 Avi_4356 PF03328 HpcH/HpaI aldolase/citrate lyase family Avi_4358 PF00694 Aconitase C-terminal domain Avi_4359 PF00180 Isocitrate/isopropylmalate dehydrogenase Avi_4360 PF01569 PAP2 superfamily Avi_4361 PF00083 Sugar (and other) transporter Avi_4363 PF01118 Semialdehyde dehydrogenase, NAD binding domain Avi_4363 PF02774 Semialdehyde dehydrogenase, dimerisation domain Avi_4364 PF13406 Transglycosylase SLT domain Avi_4366 PF00484 Carbonic anhydrase Avi_4367 PF08543 Phosphomethylpyrimidine kinase Avi_4368 PF05088 Avi_4368 Avi_4369 PF11700 Avi_4369 Avi_4370 PF06165 Glycosyltransferase family 36 Avi_4370 PF10091 Putative glucoamylase Avi_4370 PF17167 Avi_4370 Avi_4372 PF01546 Peptidase family M20/M25/M40 Avi_4372 PF07687 Peptidase dimerisation domain Avi_4373 PF00005 ABC transporter Avi_4373 PF00664 ABC transporter transmembrane region Avi_4374 PF00196 Bacterial regulatory proteins, luxR family Avi_4374 PF03472 Autoinducer binding domain Avi_4375 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Avi_4375 PF00364 Biotin-requiring enzyme Avi_4375 PF00682 HMGL-like Avi_4375 PF02436 Conserved carboxylase domain Avi_4375 PF02785 Biotin carboxylase C-terminal domain Avi_4375 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_4376 PF06262 Possibl zinc metallo-peptidase Avi_4377 PF00501 AMP-binding enzyme Avi_4377 PF13193 AMP-binding enzyme C-terminal domain Avi_4377 PF16177 Avi_4377 Avi_4378 PF06242 Avi_4378 Avi_4380 PF01168 Alanine racemase, N-terminal domain Avi_4381 PF00133 tRNA synthetases class I (I, L, M and V) Avi_4381 PF08264 Anticodon-binding domain of tRNA Avi_4381 PF13603 Leucyl-tRNA synthetase, Domain 2 Avi_4382 PF04390 Lipopolysaccharide-assembly Avi_4384 PF06144 DNA polymerase III, delta subunit Avi_4385 PF02195 ParB-like nuclease domain Avi_4386 PF13614 AAA domain Avi_4387 PF02527 rRNA small subunit methyltransferase G Avi_4389 PF01134 Glucose inhibited division protein A Avi_4389 PF13932 GidA associated domain 3 Avi_4390 PF01926 50S ribosome-binding GTPase Avi_4390 PF10396 GTP-binding protein TrmE N-terminus Avi_4390 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE Avi_4391 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Avi_4391 PF07497 Rho termination factor, RNA-binding domain Avi_4391 PF07498 Rho termination factor, N-terminal domain Avi_4392 PF03653 Avi_4392 Avi_4393 PF01208 Uroporphyrinogen decarboxylase (URO-D) Avi_5000 PF13614 AAA domain Avi_5001 PF02195 ParB-like nuclease domain Avi_5001 PF07506 Avi_5001 Avi_5002 PF03428 Avi_5002 Avi_5002 PF11800 Avi_5002 Avi_5003 PF00614 Phospholipase D Active site motif Avi_5003 PF13091 PLD-like domain Avi_5004 PF03706 Avi_5004 Avi_5005 PF03372 Endonuclease/Exonuclease/phosphatase family Avi_5006 PF07883 Cupin domain Avi_5009 PF06055 Avi_5009 Avi_5010 PF01037 AsnC family Avi_5010 PF13412 Winged helix-turn-helix DNA-binding Avi_5012 PF00005 ABC transporter Avi_5014 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_5015 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5016 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5017 PF02574 Homocysteine S-methyltransferase Avi_5018 PF01032 FecCD transport family Avi_5019 PF01497 Periplasmic binding protein Avi_5021 PF00005 ABC transporter Avi_5022 PF01546 Peptidase family M20/M25/M40 Avi_5022 PF07687 Peptidase dimerisation domain Avi_5024 PF00534 Glycosyl transferases group 1 Avi_5024 PF08323 Starch synthase catalytic domain Avi_5025 PF11154 Avi_5025 Avi_5028 PF14231 GXWXG protein Avi_5028 PF14232 Domain of unknown function (DUF4334) Avi_5029 PF13593 SBF-like CPA transporter family (DUF4137) Avi_5030 PF00107 Zinc-binding dehydrogenase Avi_5030 PF08240 Alcohol dehydrogenase GroES-like domain Avi_5031 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Avi_5031 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Avi_5032 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_5034 PF01202 Shikimate kinase Avi_5035 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Avi_5035 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Avi_5038 PF00356 Bacterial regulatory proteins, lacI family Avi_5038 PF13377 Periplasmic binding protein-like domain Avi_5039 PF13407 Periplasmic binding protein domain Avi_5041 PF02653 Avi_5041 Avi_5042 PF00005 ABC transporter Avi_5045 PF07756 Avi_5045 Avi_5045 PF11972 Avi_5045 Avi_5046 PF13407 Periplasmic binding protein domain Avi_5049 PF00005 ABC transporter Avi_5050 PF02653 Avi_5050 Avi_5051 PF02653 Avi_5051 Avi_5052 PF00392 Bacterial regulatory proteins, gntR family Avi_5052 PF07729 FCD domain Avi_5053 PF00171 Aldehyde dehydrogenase family Avi_5054 PF00171 Aldehyde dehydrogenase family Avi_5055 PF12833 Helix-turn-helix domain Avi_5056 PF03737 Demethylmenaquinone methyltransferase Avi_5057 PF00920 Dehydratase family Avi_5058 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5059 PF00005 ABC transporter Avi_5060 PF13379 NMT1-like family Avi_5061 PF00392 Bacterial regulatory proteins, gntR family Avi_5061 PF07729 FCD domain Avi_5062 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_5062 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_5063 PF00881 Nitroreductase family Avi_5064 PF12680 SnoaL-like domain Avi_5066 PF02353 Mycolic acid cyclopropane synthetase Avi_5067 PF00916 Avi_5067 Avi_5067 PF01740 STAS domain Avi_5068 PF00582 Universal stress protein family Avi_5070 PF07690 Major Facilitator Superfamily Avi_5072 PF13181 Tetratricopeptide repeat Avi_5072 PF14559 Tetratricopeptide repeat Avi_5073 PF00440 Bacterial regulatory proteins, tetR family Avi_5074 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_5074 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_5075 PF12680 SnoaL-like domain Avi_5076 PF07690 Major Facilitator Superfamily Avi_5077 PF01613 Flavin reductase like domain Avi_5079 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_5080 PF04966 Carbohydrate-selective porin, OprB family Avi_5081 PF06314 Acetoacetate decarboxylase (ADC) Avi_5082 PF01557 Fumarylacetoacetate (FAA) hydrolase family Avi_5084 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Avi_5085 PF00392 Bacterial regulatory proteins, gntR family Avi_5085 PF07729 FCD domain Avi_5086 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5087 PF00232 Glycosyl hydrolase family 1 Avi_5088 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5089 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5089 PF12911 Avi_5089 Avi_5090 PF01979 Amidohydrolase family Avi_5091 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease Avi_5093 PF01614 Bacterial transcriptional regulator Avi_5093 PF09339 IclR helix-turn-helix domain Avi_5094 PF03841 L-seryl-tRNA selenium transferase Avi_5096 PF00990 GGDEF domain Avi_5096 PF07694 5TMR of 5TMR-LYT Avi_5096 PF12860 Avi_5096 Avi_5097 PF01841 Transglutaminase-like superfamily Avi_5097 PF08379 Avi_5097 Avi_5101 PF01841 Transglutaminase-like superfamily Avi_5103 PF00111 2Fe-2S iron-sulfur cluster binding domain Avi_5103 PF01799 [2Fe-2S] binding domain Avi_5106 PF00941 FAD binding domain in molybdopterin dehydrogenase Avi_5106 PF03450 CO dehydrogenase flavoprotein C-terminal domain Avi_5107 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Avi_5107 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Avi_5108 PF00072 Response regulator receiver domain Avi_5108 PF00512 His Kinase A (phospho-acceptor) domain Avi_5108 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_5109 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5109 PF03466 LysR substrate binding domain Avi_5111 PF04752 Avi_5111 Avi_5112 PF00561 alpha/beta hydrolase fold Avi_5113 PF00106 short chain dehydrogenase Avi_5113 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_5114 PF01272 Transcription elongation factor, GreA/GreB, C-term Avi_5115 PF02056 Family 4 glycosyl hydrolase Avi_5115 PF11975 Family 4 glycosyl hydrolase C-terminal domain Avi_5116 PF00005 ABC transporter Avi_5116 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5117 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5117 PF12911 Avi_5117 Avi_5118 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5121 PF02056 Family 4 glycosyl hydrolase Avi_5121 PF11975 Family 4 glycosyl hydrolase C-terminal domain Avi_5122 PF02311 AraC-like ligand binding domain Avi_5122 PF12833 Helix-turn-helix domain Avi_5125 PF00072 Response regulator receiver domain Avi_5125 PF00486 Transcriptional regulatory protein, C terminal Avi_5126 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_5127 PF00226 DnaJ domain Avi_5128 PF00107 Zinc-binding dehydrogenase Avi_5128 PF08240 Alcohol dehydrogenase GroES-like domain Avi_5129 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Avi_5129 PF13378 Enolase C-terminal domain-like Avi_5130 PF04909 Amidohydrolase Avi_5131 PF00248 Aldo/keto reductase family Avi_5133 PF13407 Periplasmic binding protein domain Avi_5134 PF02653 Avi_5134 Avi_5135 PF00005 ABC transporter Avi_5136 PF00392 Bacterial regulatory proteins, gntR family Avi_5136 PF07729 FCD domain Avi_5137 PF13416 Bacterial extracellular solute-binding protein Avi_5138 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5139 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5140 PF00005 ABC transporter Avi_5141 PF14498 Glycosyl hydrolase family 65, N-terminal domain Avi_5142 PF14871 Avi_5142 Avi_5143 PF00356 Bacterial regulatory proteins, lacI family Avi_5143 PF13377 Periplasmic binding protein-like domain Avi_5146 PF00005 ABC transporter Avi_5146 PF12399 Branched-chain amino acid ATP-binding cassette transporter Avi_5147 PF02653 Avi_5147 Avi_5148 PF02653 Avi_5148 Avi_5149 PF13458 Periplasmic binding protein Avi_5150 PF00005 ABC transporter Avi_5151 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_5151 PF00672 HAMP domain Avi_5152 PF00296 Luciferase-like monooxygenase Avi_5154 PF00296 Luciferase-like monooxygenase Avi_5155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_5155 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_5156 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_5156 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_5156 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_5157 PF00248 Aldo/keto reductase family Avi_5158 PF08309 Avi_5158 Avi_5159 PF13407 Periplasmic binding protein domain Avi_5160 PF02653 Avi_5160 Avi_5161 PF00005 ABC transporter Avi_5162 PF13407 Periplasmic binding protein domain Avi_5163 PF01053 Cys/Met metabolism PLP-dependent enzyme Avi_5165 PF13407 Periplasmic binding protein domain Avi_5167 PF00005 ABC transporter Avi_5168 PF02653 Avi_5168 Avi_5169 PF02653 Avi_5169 Avi_5170 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_5171 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5172 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5173 PF00005 ABC transporter Avi_5175 PF03972 MmgE/PrpD family Avi_5176 PF00296 Luciferase-like monooxygenase Avi_5177 PF02558 Ketopantoate reductase PanE/ApbA Avi_5177 PF08546 Ketopantoate reductase PanE/ApbA C terminal Avi_5178 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_5178 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_5178 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_5179 PF00296 Luciferase-like monooxygenase Avi_5180 PF00296 Luciferase-like monooxygenase Avi_5181 PF00005 ABC transporter Avi_5181 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5182 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5183 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5184 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5186 PF03797 Autotransporter beta-domain Avi_5187 PF06776 Invasion associated locus B (IalB) protein Avi_5188 PF00072 Response regulator receiver domain Avi_5188 PF00196 Bacterial regulatory proteins, luxR family Avi_5189 PF00072 Response regulator receiver domain Avi_5189 PF00512 His Kinase A (phospho-acceptor) domain Avi_5189 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_5190 PF00141 Peroxidase Avi_5192 PF04074 Domain of unknown function (DUF386) Avi_5193 PF00701 Dihydrodipicolinate synthetase family Avi_5194 PF07690 Major Facilitator Superfamily Avi_5195 PF00356 Bacterial regulatory proteins, lacI family Avi_5195 PF13377 Periplasmic binding protein-like domain Avi_5196 PF00296 Luciferase-like monooxygenase Avi_5198 PF00296 Luciferase-like monooxygenase Avi_5199 PF01546 Peptidase family M20/M25/M40 Avi_5199 PF07687 Peptidase dimerisation domain Avi_5200 PF00583 Acetyltransferase (GNAT) family Avi_5205 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_5206 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_5208 PF00296 Luciferase-like monooxygenase Avi_5209 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_5210 PF00072 Response regulator receiver domain Avi_5210 PF00486 Transcriptional regulatory protein, C terminal Avi_5211 PF16576 Avi_5211 Avi_5212 PF00873 AcrB/AcrD/AcrF family Avi_5213 PF11769 Avi_5213 Avi_5215 PF12833 Helix-turn-helix domain Avi_5215 PF14525 Avi_5215 Avi_5216 PF00296 Luciferase-like monooxygenase Avi_5217 PF01613 Flavin reductase like domain Avi_5218 PF07690 Major Facilitator Superfamily Avi_5219 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_5222 PF00440 Bacterial regulatory proteins, tetR family Avi_5223 PF01565 FAD binding domain Avi_5223 PF04030 D-arabinono-1,4-lactone oxidase Avi_5224 PF01168 Alanine racemase, N-terminal domain Avi_5225 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Avi_5226 PF00171 Aldehyde dehydrogenase family Avi_5228 PF12625 Avi_5228 Avi_5228 PF12833 Helix-turn-helix domain Avi_5229 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Avi_5229 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Avi_5230 PF00596 Class II Aldolase and Adducin N-terminal domain Avi_5231 PF00202 Aminotransferase class-III Avi_5234 PF01370 NAD dependent epimerase/dehydratase family Avi_5235 PF00106 short chain dehydrogenase Avi_5237 PF12710 haloacid dehalogenase-like hydrolase Avi_5238 PF07394 Avi_5238 Avi_5240 PF08811 Avi_5240 Avi_5241 PF13801 Heavy-metal resistance Avi_5243 PF04542 Sigma-70 region 2 Avi_5243 PF08281 Sigma-70, region 4 Avi_5247 PF03831 PhnA protein Avi_5248 PF01011 PQQ enzyme repeat Avi_5249 PF00480 ROK family Avi_5249 PF12802 MarR family Avi_5250 PF01547 Bacterial extracellular solute-binding protein Avi_5252 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5254 PF00005 ABC transporter Avi_5254 PF08402 TOBE domain Avi_5255 PF03009 Glycerophosphoryl diester phosphodiesterase family Avi_5256 PF00149 Calcineurin-like phosphoesterase Avi_5259 PF07484 Phage Tail Collar Domain Avi_5260 PF00041 Fibronectin type III domain Avi_5260 PF05345 Putative Ig domain Avi_5262 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_5263 PF03334 Avi_5263 Avi_5264 PF04066 Avi_5264 Avi_5265 PF01899 Avi_5265 Avi_5266 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Avi_5268 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Avi_5269 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Avi_5269 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Avi_5269 PF04039 Avi_5269 Avi_5269 PF13244 Avi_5269 Avi_5270 PF02608 Basic membrane protein Avi_5271 PF01425 Amidase Avi_5272 PF00005 ABC transporter Avi_5273 PF02653 Avi_5273 Avi_5274 PF02653 Avi_5274 Avi_5276 PF07969 Amidohydrolase family Avi_5277 PF01979 Amidohydrolase family Avi_5278 PF14027 Avi_5278 Avi_5280 PF02633 Creatinine amidohydrolase Avi_5281 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) Avi_5282 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5284 PF00005 ABC transporter Avi_5284 PF08402 TOBE domain Avi_5285 PF13416 Bacterial extracellular solute-binding protein Avi_5286 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5286 PF03466 LysR substrate binding domain Avi_5287 PF00196 Bacterial regulatory proteins, luxR family Avi_5288 PF01425 Amidase Avi_5289 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5290 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5291 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5292 PF00005 ABC transporter Avi_5293 PF00005 ABC transporter Avi_5293 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5294 PF00005 ABC transporter Avi_5294 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5296 PF01047 MarR family Avi_5297 PF01266 FAD dependent oxidoreductase Avi_5299 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5300 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5301 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5301 PF12911 Avi_5301 Avi_5303 PF00480 ROK family Avi_5303 PF13412 Winged helix-turn-helix DNA-binding Avi_5304 PF00005 ABC transporter Avi_5305 PF13407 Periplasmic binding protein domain Avi_5307 PF02653 Avi_5307 Avi_5308 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_5309 PF12802 MarR family Avi_5310 PF01613 Flavin reductase like domain Avi_5311 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_5311 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_5313 PF07690 Major Facilitator Superfamily Avi_5314 PF04966 Carbohydrate-selective porin, OprB family Avi_5315 PF12680 SnoaL-like domain Avi_5317 PF00043 Glutathione S-transferase, C-terminal domain Avi_5317 PF02798 Glutathione S-transferase, N-terminal domain Avi_5318 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_5319 PF06314 Acetoacetate decarboxylase (ADC) Avi_5320 PF01557 Fumarylacetoacetate (FAA) hydrolase family Avi_5320 PF10370 Domain of unknown function (DUF2437) Avi_5321 PF07995 Glucose / Sorbosone dehydrogenase Avi_5322 PF04041 Domain of unknown function (DUF377) Avi_5324 PF00534 Glycosyl transferases group 1 Avi_5324 PF13439 Glycosyltransferase Family 4 Avi_5326 PF00199 Catalase Avi_5326 PF06628 Catalase-related immune-responsive Avi_5327 PF01384 Avi_5327 Avi_5328 PF00005 ABC transporter Avi_5328 PF08402 TOBE domain Avi_5329 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5330 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5331 PF13416 Bacterial extracellular solute-binding protein Avi_5334 PF00171 Aldehyde dehydrogenase family Avi_5336 PF00480 ROK family Avi_5336 PF13671 AAA domain Avi_5337 PF01791 DeoC/LacD family aldolase Avi_5338 PF04198 Putative sugar-binding domain Avi_5338 PF08281 Sigma-70, region 4 Avi_5339 PF13407 Periplasmic binding protein domain Avi_5341 PF02653 Avi_5341 Avi_5342 PF00005 ABC transporter Avi_5343 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_5344 PF01546 Peptidase family M20/M25/M40 Avi_5344 PF07687 Peptidase dimerisation domain Avi_5346 PF01053 Cys/Met metabolism PLP-dependent enzyme Avi_5347 PF00392 Bacterial regulatory proteins, gntR family Avi_5347 PF07729 FCD domain Avi_5349 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5350 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5351 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5351 PF12911 Avi_5351 Avi_5352 PF00005 ABC transporter Avi_5352 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5354 PF00005 ABC transporter Avi_5354 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5355 PF00557 Metallopeptidase family M24 Avi_5355 PF01321 Creatinase/Prolidase N-terminal domain Avi_5356 PF00392 Bacterial regulatory proteins, gntR family Avi_5356 PF07729 FCD domain Avi_5357 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5358 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5359 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5359 PF12911 Avi_5359 Avi_5360 PF01019 Gamma-glutamyltranspeptidase Avi_5362 PF00005 ABC transporter Avi_5362 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5363 PF03738 Glutathionylspermidine synthase preATP-grasp Avi_5364 PF06693 Avi_5364 Avi_5365 PF03994 Avi_5365 Avi_5366 PF10679 Avi_5366 Avi_5367 PF09938 Avi_5367 Avi_5368 PF04012 Avi_5368 Avi_5370 PF03600 Citrate transporter Avi_5370 PF07158 Avi_5370 Avi_5371 PF00501 AMP-binding enzyme Avi_5371 PF13193 AMP-binding enzyme C-terminal domain Avi_5372 PF05292 Malonyl-CoA decarboxylase (MCD) Avi_5372 PF17408 Avi_5372 Avi_5373 PF00392 Bacterial regulatory proteins, gntR family Avi_5373 PF07729 FCD domain Avi_5374 PF00196 Bacterial regulatory proteins, luxR family Avi_5375 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5376 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5376 PF12911 Avi_5376 Avi_5377 PF00005 ABC transporter Avi_5377 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5378 PF01968 Hydantoinase/oxoprolinase Avi_5378 PF05378 Avi_5378 Avi_5379 PF06032 Protein of unknown function (DUF917) Avi_5380 PF06032 Protein of unknown function (DUF917) Avi_5381 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5382 PF00072 Response regulator receiver domain Avi_5383 PF00072 Response regulator receiver domain Avi_5383 PF00512 His Kinase A (phospho-acceptor) domain Avi_5383 PF00672 HAMP domain Avi_5383 PF00989 PAS fold Avi_5383 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_5383 PF05227 CHASE3 domain Avi_5384 PF00072 Response regulator receiver domain Avi_5384 PF00196 Bacterial regulatory proteins, luxR family Avi_5386 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_5386 PF07730 Histidine kinase Avi_5387 PF08332 Calcium/calmodulin dependent protein kinase II Association Avi_5388 PF07690 Major Facilitator Superfamily Avi_5390 PF00005 ABC transporter Avi_5390 PF12857 Avi_5390 Avi_5391 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5392 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5393 PF13531 Bacterial extracellular solute-binding protein Avi_5394 PF00356 Bacterial regulatory proteins, lacI family Avi_5394 PF13377 Periplasmic binding protein-like domain Avi_5395 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_5396 PF01261 Xylose isomerase-like TIM barrel Avi_5398 PF01547 Bacterial extracellular solute-binding protein Avi_5399 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5400 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5401 PF00005 ABC transporter Avi_5401 PF08402 TOBE domain Avi_5403 PF09084 NMT1/THI5 like Avi_5404 PF00005 ABC transporter Avi_5406 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5408 PF03171 2OG-Fe(II) oxygenase superfamily Avi_5408 PF14226 non-haem dioxygenase in morphine synthesis N-terminal Avi_5409 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5409 PF03466 LysR substrate binding domain Avi_5410 PF07969 Amidohydrolase family Avi_5411 PF00703 Glycosyl hydrolases family 2 Avi_5411 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Avi_5411 PF02837 Glycosyl hydrolases family 2, sugar binding domain Avi_5411 PF02929 Beta galactosidase small chain Avi_5411 PF16353 Avi_5411 Avi_5412 PF00480 ROK family Avi_5412 PF01047 MarR family Avi_5413 PF01226 Formate/nitrite transporter Avi_5414 PF01979 Amidohydrolase family Avi_5417 PF02653 Avi_5417 Avi_5418 PF02653 Avi_5418 Avi_5419 PF00005 ABC transporter Avi_5420 PF02608 Basic membrane protein Avi_5422 PF00355 Rieske [2Fe-2S] domain Avi_5423 PF00043 Glutathione S-transferase, C-terminal domain Avi_5423 PF13417 Glutathione S-transferase, N-terminal domain Avi_5424 PF01979 Amidohydrolase family Avi_5424 PF13382 Adenine deaminase C-terminal domain Avi_5425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5425 PF03466 LysR substrate binding domain Avi_5426 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Avi_5427 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Avi_5431 PF01979 Amidohydrolase family Avi_5433 PF00941 FAD binding domain in molybdopterin dehydrogenase Avi_5433 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Avi_5433 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Avi_5433 PF03450 CO dehydrogenase flavoprotein C-terminal domain Avi_5434 PF00111 2Fe-2S iron-sulfur cluster binding domain Avi_5434 PF01799 [2Fe-2S] binding domain Avi_5435 PF00171 Aldehyde dehydrogenase family Avi_5436 PF01144 Coenzyme A transferase Avi_5437 PF01144 Coenzyme A transferase Avi_5438 PF00392 Bacterial regulatory proteins, gntR family Avi_5438 PF07729 FCD domain Avi_5439 PF01070 FMN-dependent dehydrogenase Avi_5440 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_5441 PF01557 Fumarylacetoacetate (FAA) hydrolase family Avi_5443 PF01494 FAD binding domain Avi_5444 PF13458 Periplasmic binding protein Avi_5445 PF02653 Avi_5445 Avi_5446 PF02653 Avi_5446 Avi_5447 PF00005 ABC transporter Avi_5447 PF12399 Branched-chain amino acid ATP-binding cassette transporter Avi_5448 PF00005 ABC transporter Avi_5449 PF01261 Xylose isomerase-like TIM barrel Avi_5449 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal Avi_5451 PF00440 Bacterial regulatory proteins, tetR family Avi_5453 PF01220 Dehydroquinase class II Avi_5454 PF00899 ThiF family Avi_5454 PF08501 Shikimate dehydrogenase substrate binding domain Avi_5456 PF00005 ABC transporter Avi_5457 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_5458 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5459 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5460 PF13557 Avi_5460 Avi_5461 PF00128 Alpha amylase, catalytic domain Avi_5461 PF11941 Domain of unknown function (DUF3459) Avi_5462 PF00128 Alpha amylase, catalytic domain Avi_5463 PF02566 OsmC-like protein Avi_5465 PF09851 Avi_5465 Avi_5466 PF13454 FAD-NAD(P)-binding Avi_5467 PF00005 ABC transporter Avi_5468 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5469 PF13379 NMT1-like family Avi_5471 PF09084 NMT1/THI5 like Avi_5472 PF00296 Luciferase-like monooxygenase Avi_5475 PF02082 Transcriptional regulator Avi_5477 PF01613 Flavin reductase like domain Avi_5479 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_5481 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5481 PF03466 LysR substrate binding domain Avi_5482 PF07859 alpha/beta hydrolase fold Avi_5483 PF16576 Avi_5483 Avi_5484 PF00873 AcrB/AcrD/AcrF family Avi_5485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5485 PF03466 LysR substrate binding domain Avi_5486 PF00326 Prolyl oligopeptidase family Avi_5487 PF07110 EthD domain Avi_5488 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_5489 PF00355 Rieske [2Fe-2S] domain Avi_5490 PF01494 FAD binding domain Avi_5491 PF07690 Major Facilitator Superfamily Avi_5492 PF07883 Cupin domain Avi_5493 PF01557 Fumarylacetoacetate (FAA) hydrolase family Avi_5494 PF01370 NAD dependent epimerase/dehydratase family Avi_5495 PF04199 Putative cyclase Avi_5496 PF00005 ABC transporter Avi_5496 PF09821 Avi_5496 Avi_5498 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5501 PF00512 His Kinase A (phospho-acceptor) domain Avi_5501 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_5502 PF00072 Response regulator receiver domain Avi_5502 PF00196 Bacterial regulatory proteins, luxR family Avi_5503 PF01261 Xylose isomerase-like TIM barrel Avi_5504 PF00005 ABC transporter Avi_5504 PF08402 TOBE domain Avi_5505 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5506 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5507 PF13416 Bacterial extracellular solute-binding protein Avi_5508 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5510 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5511 PF00005 ABC transporter Avi_5512 PF13416 Bacterial extracellular solute-binding protein Avi_5513 PF04685 Protein of unknown function, DUF608 Avi_5514 PF00480 ROK family Avi_5515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5516 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5517 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5517 PF12911 Avi_5517 Avi_5518 PF00005 ABC transporter Avi_5518 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5520 PF00005 ABC transporter Avi_5520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5521 PF00072 Response regulator receiver domain Avi_5521 PF00486 Transcriptional regulatory protein, C terminal Avi_5522 PF00512 His Kinase A (phospho-acceptor) domain Avi_5522 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_5522 PF08521 Avi_5522 Avi_5523 PF12710 haloacid dehalogenase-like hydrolase Avi_5524 PF00202 Aminotransferase class-III Avi_5526 PF00892 EamA-like transporter family Avi_5527 PF00487 Avi_5527 Avi_5529 PF12146 Putative lysophospholipase Avi_5530 PF04339 Avi_5530 Avi_5531 PF00892 EamA-like transporter family Avi_5533 PF06629 Avi_5533 Avi_5534 PF03170 Bacterial cellulose synthase subunit Avi_5535 PF00535 Glycosyl transferase family 2 Avi_5535 PF03552 Cellulose synthase Avi_5535 PF07238 PilZ domain Avi_5536 PF17038 Avi_5536 Avi_5539 PF01590 GAF domain Avi_5539 PF07536 Avi_5539 Avi_5539 PF08447 PAS fold Avi_5539 PF13185 GAF domain Avi_5540 PF07568 Avi_5540 Avi_5540 PF13426 PAS domain Avi_5541 PF00072 Response regulator receiver domain Avi_5544 PF03193 Protein of unknown function, DUF258 Avi_5545 PF00072 Response regulator receiver domain Avi_5545 PF00512 His Kinase A (phospho-acceptor) domain Avi_5545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_5545 PF08447 PAS fold Avi_5545 PF08448 PAS fold Avi_5547 PF01370 NAD dependent epimerase/dehydratase family Avi_5548 PF01266 FAD dependent oxidoreductase Avi_5549 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_5549 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Avi_5550 PF00005 ABC transporter Avi_5550 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5552 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_5553 PF00356 Bacterial regulatory proteins, lacI family Avi_5553 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Avi_5554 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_5554 PF00672 HAMP domain Avi_5554 PF02203 Tar ligand binding domain homologue Avi_5555 PF01584 CheW-like domain Avi_5556 PF16576 Avi_5556 Avi_5557 PF00873 AcrB/AcrD/AcrF family Avi_5558 PF00873 AcrB/AcrD/AcrF family Avi_5559 PF00392 Bacterial regulatory proteins, gntR family Avi_5559 PF07729 FCD domain Avi_5560 PF01571 Aminomethyltransferase folate-binding domain Avi_5561 PF00122 E1-E2 ATPase Avi_5561 PF00403 Heavy-metal-associated domain Avi_5561 PF00702 haloacid dehalogenase-like hydrolase Avi_5562 PF13411 MerR HTH family regulatory protein Avi_5563 PF00128 Alpha amylase, catalytic domain Avi_5563 PF02806 Alpha amylase, C-terminal all-beta domain Avi_5563 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Avi_5564 PF00128 Alpha amylase, catalytic domain Avi_5564 PF16657 Avi_5564 Avi_5565 PF00128 Alpha amylase, catalytic domain Avi_5565 PF11896 Domain of unknown function (DUF3416) Avi_5566 PF02446 4-alpha-glucanotransferase Avi_5567 PF00313 'Cold-shock' DNA-binding domain Avi_5568 PF01207 Dihydrouridine synthase (Dus) Avi_5570 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_5570 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Avi_5571 PF06283 Trehalose utilisation Avi_5575 PF00392 Bacterial regulatory proteins, gntR family Avi_5575 PF07729 FCD domain Avi_5576 PF00701 Dihydrodipicolinate synthetase family Avi_5578 PF01074 Glycosyl hydrolases family 38 N-terminal domain Avi_5578 PF07748 Glycosyl hydrolases family 38 C-terminal domain Avi_5578 PF09261 Alpha mannosidase, middle domain Avi_5579 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_5579 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Avi_5580 PF13416 Bacterial extracellular solute-binding protein Avi_5581 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5582 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5583 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_5583 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Avi_5584 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_5584 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Avi_5585 PF00005 ABC transporter Avi_5585 PF08402 TOBE domain Avi_5586 PF01564 Spermine/spermidine synthase Avi_5587 PF06568 Avi_5587 Avi_5588 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_5589 PF02743 Cache domain Avi_5589 PF07536 Avi_5589 Avi_5589 PF13581 Histidine kinase-like ATPase domain Avi_5592 PF06745 KaiC Avi_5593 PF07536 Avi_5593 Avi_5594 PF13545 Crp-like helix-turn-helix domain Avi_5595 PF00107 Zinc-binding dehydrogenase Avi_5595 PF08240 Alcohol dehydrogenase GroES-like domain Avi_5596 PF05974 Domain of unknown function (DUF892) Avi_5597 PF04542 Sigma-70 region 2 Avi_5597 PF08281 Sigma-70, region 4 Avi_5598 PF01614 Bacterial transcriptional regulator Avi_5598 PF09339 IclR helix-turn-helix domain Avi_5599 PF07690 Major Facilitator Superfamily Avi_5600 PF13557 Avi_5600 Avi_5602 PF00563 EAL domain Avi_5602 PF00990 GGDEF domain Avi_5603 PF12706 Beta-lactamase superfamily domain Avi_5604 PF00111 2Fe-2S iron-sulfur cluster binding domain Avi_5604 PF00211 Adenylate and Guanylate cyclase catalytic domain Avi_5605 PF00211 Adenylate and Guanylate cyclase catalytic domain Avi_5606 PF00005 ABC transporter Avi_5606 PF00664 ABC transporter transmembrane region Avi_5607 PF00027 Cyclic nucleotide-binding domain Avi_5608 PF00459 Inositol monophosphatase family Avi_5609 PF03009 Glycerophosphoryl diester phosphodiesterase family Avi_5610 PF00005 ABC transporter Avi_5610 PF08402 TOBE domain Avi_5611 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5612 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5613 PF13416 Bacterial extracellular solute-binding protein Avi_5614 PF12804 MobA-like NTP transferase domain Avi_5616 PF03786 D-mannonate dehydratase (UxuA) Avi_5617 PF13450 NAD(P)-binding Rossmann-like domain Avi_5618 PF10027 Avi_5618 Avi_5619 PF00550 Phosphopantetheine attachment site Avi_5621 PF12697 Alpha/beta hydrolase family Avi_5624 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_5624 PF00550 Phosphopantetheine attachment site Avi_5624 PF00698 Acyl transferase domain Avi_5624 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_5624 PF08659 KR domain Avi_5624 PF14765 Polyketide synthase dehydratase Avi_5624 PF16197 Avi_5624 Avi_5625 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_5625 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_5625 PF07977 FabA-like domain Avi_5626 PF03060 Nitronate monooxygenase Avi_5627 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Avi_5627 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_5628 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Avi_5628 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_5628 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_5629 PF03069 Acetamidase/Formamidase family Avi_5630 PF00005 ABC transporter Avi_5630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5631 PF00005 ABC transporter Avi_5631 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5632 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5633 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5633 PF12911 Avi_5633 Avi_5634 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5637 PF00561 alpha/beta hydrolase fold Avi_5638 PF03861 ANTAR domain Avi_5639 PF13433 Periplasmic binding protein domain Avi_5640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5640 PF03466 LysR substrate binding domain Avi_5641 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5642 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5643 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5644 PF00005 ABC transporter Avi_5644 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5646 PF00005 ABC transporter Avi_5646 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5648 PF01425 Amidase Avi_5649 PF01425 Amidase Avi_5650 PF12973 ChrR Cupin-like domain Avi_5651 PF00857 Isochorismatase family Avi_5652 PF00005 ABC transporter Avi_5653 PF09663 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) Avi_5654 PF00857 Isochorismatase family Avi_5655 PF00795 Carbon-nitrogen hydrolase Avi_5656 PF02653 Avi_5656 Avi_5657 PF02653 Avi_5657 Avi_5659 PF02608 Basic membrane protein Avi_5660 PF00392 Bacterial regulatory proteins, gntR family Avi_5660 PF07729 FCD domain Avi_5661 PF00005 ABC transporter Avi_5661 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5662 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5663 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5666 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5667 PF13419 Haloacid dehalogenase-like hydrolase Avi_5668 PF00202 Aminotransferase class-III Avi_5669 PF00583 Acetyltransferase (GNAT) family Avi_5670 PF13419 Haloacid dehalogenase-like hydrolase Avi_5671 PF01266 FAD dependent oxidoreductase Avi_5673 PF00171 Aldehyde dehydrogenase family Avi_5674 PF05899 Protein of unknown function (DUF861) Avi_5675 PF01546 Peptidase family M20/M25/M40 Avi_5675 PF07687 Peptidase dimerisation domain Avi_5677 PF00440 Bacterial regulatory proteins, tetR family Avi_5677 PF08361 MAATS-type transcriptional repressor, C-terminal region Avi_5678 PF13437 HlyD family secretion protein Avi_5678 PF13533 Biotin-lipoyl like Avi_5679 PF00873 AcrB/AcrD/AcrF family Avi_5680 PF01039 Carboxyl transferase domain Avi_5683 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Avi_5683 PF00364 Biotin-requiring enzyme Avi_5683 PF02785 Biotin carboxylase C-terminal domain Avi_5683 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_5686 PF03693 Uncharacterised protein family (UPF0156) Avi_5687 PF01642 Methylmalonyl-CoA mutase Avi_5687 PF02310 B12 binding domain Avi_5688 PF01047 MarR family Avi_5689 PF04632 Avi_5689 Avi_5690 PF13437 HlyD family secretion protein Avi_5690 PF13533 Biotin-lipoyl like Avi_5691 PF01557 Fumarylacetoacetate (FAA) hydrolase family Avi_5692 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_5693 PF00975 Thioesterase domain Avi_5694 PF01370 NAD dependent epimerase/dehydratase family Avi_5696 PF08450 SMP-30/Gluconolaconase/LRE-like region Avi_5697 PF00005 ABC transporter Avi_5697 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_5698 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5698 PF12911 Avi_5698 Avi_5699 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_5701 PF00701 Dihydrodipicolinate synthetase family Avi_5703 PF00392 Bacterial regulatory proteins, gntR family Avi_5703 PF07729 FCD domain Avi_5704 PF01546 Peptidase family M20/M25/M40 Avi_5704 PF07687 Peptidase dimerisation domain Avi_5706 PF12840 Helix-turn-helix domain Avi_5707 PF06964 Alpha-L-arabinofuranosidase C-terminus Avi_5708 PF00005 ABC transporter Avi_5708 PF08402 TOBE domain Avi_5709 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5710 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5711 PF13416 Bacterial extracellular solute-binding protein Avi_5713 PF00885 6,7-dimethyl-8-ribityllumazine synthase Avi_5716 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5716 PF03466 LysR substrate binding domain Avi_5718 PF01266 FAD dependent oxidoreductase Avi_5719 PF00171 Aldehyde dehydrogenase family Avi_5720 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Avi_5720 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Avi_5722 PF03928 Domain of unknown function (DUF336) Avi_5723 PF08450 SMP-30/Gluconolaconase/LRE-like region Avi_5724 PF03033 Glycosyltransferase family 28 N-terminal domain Avi_5725 PF00196 Bacterial regulatory proteins, luxR family Avi_5725 PF03472 Autoinducer binding domain Avi_5726 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Avi_5726 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Avi_5727 PF01053 Cys/Met metabolism PLP-dependent enzyme Avi_5728 PF01554 MatE Avi_5729 PF13523 Acetyltransferase (GNAT) domain Avi_5730 PF00501 AMP-binding enzyme Avi_5730 PF00550 Phosphopantetheine attachment site Avi_5730 PF00668 Condensation domain Avi_5730 PF00975 Thioesterase domain Avi_5730 PF13193 AMP-binding enzyme C-terminal domain Avi_5731 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) Avi_5732 PF04542 Sigma-70 region 2 Avi_5733 PF00583 Acetyltransferase (GNAT) family Avi_5734 PF06276 Ferric iron reductase FhuF-like transporter Avi_5734 PF11575 Avi_5734 Avi_5735 PF07883 Cupin domain Avi_5735 PF12833 Helix-turn-helix domain Avi_5736 PF01547 Bacterial extracellular solute-binding protein Avi_5738 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5739 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5740 PF02065 Melibiase Avi_5740 PF16875 Avi_5740 Avi_5741 PF00005 ABC transporter Avi_5741 PF08402 TOBE domain Avi_5742 PF02449 Beta-galactosidase Avi_5742 PF08532 Beta-galactosidase trimerisation domain Avi_5743 PF04268 Sarcosine oxidase, gamma subunit family Avi_5744 PF01571 Aminomethyltransferase folate-binding domain Avi_5744 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_5744 PF08669 Glycine cleavage T-protein C-terminal barrel domain Avi_5744 PF13510 2Fe-2S iron-sulfur cluster binding domain Avi_5745 PF04267 Sarcosine oxidase, delta subunit family Avi_5746 PF01266 FAD dependent oxidoreductase Avi_5747 PF01965 DJ-1/PfpI family Avi_5747 PF12833 Helix-turn-helix domain Avi_5748 PF01381 Helix-turn-helix Avi_5748 PF07883 Cupin domain Avi_5749 PF13522 Glutamine amidotransferase domain Avi_5750 PF01493 GXGXG motif Avi_5751 PF01645 Conserved region in glutamate synthase Avi_5752 PF00120 Glutamine synthetase, catalytic domain Avi_5753 PF07690 Major Facilitator Superfamily Avi_5754 PF01070 FMN-dependent dehydrogenase Avi_5755 PF13416 Bacterial extracellular solute-binding protein Avi_5758 PF07470 Glycosyl Hydrolase Family 88 Avi_5759 PF00295 Glycosyl hydrolases family 28 Avi_5760 PF00005 ABC transporter Avi_5762 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5763 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5764 PF00356 Bacterial regulatory proteins, lacI family Avi_5764 PF13377 Periplasmic binding protein-like domain Avi_5766 PF01734 Patatin-like phospholipase Avi_5766 PF12536 Avi_5766 Avi_5768 PF00107 Zinc-binding dehydrogenase Avi_5768 PF08240 Alcohol dehydrogenase GroES-like domain Avi_5769 PF01738 Dienelactone hydrolase family Avi_5770 PF00478 IMP dehydrogenase / GMP reductase domain Avi_5770 PF00571 CBS domain Avi_5771 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5771 PF03466 LysR substrate binding domain Avi_5773 PF00440 Bacterial regulatory proteins, tetR family Avi_5774 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5774 PF03466 LysR substrate binding domain Avi_5775 PF06568 Avi_5775 Avi_5777 PF06078 Bacterial protein of unknown function (DUF937) Avi_5779 PF04107 Glutamate-cysteine ligase family 2(GCS2) Avi_5780 PF04452 RNA methyltransferase Avi_5782 PF01384 Avi_5782 Avi_5786 PF01565 FAD binding domain Avi_5786 PF02913 FAD linked oxidases, C-terminal domain Avi_5788 PF01565 FAD binding domain Avi_5789 PF02754 Avi_5789 Avi_5789 PF12838 4Fe-4S dicluster domain Avi_5791 PF00043 Glutathione S-transferase, C-terminal domain Avi_5791 PF02798 Glutathione S-transferase, N-terminal domain Avi_5793 PF07681 Avi_5793 Avi_5794 PF01634 ATP phosphoribosyltransferase Avi_5795 PF13393 Histidyl-tRNA synthetase Avi_5801 PF03129 Anticodon binding domain Avi_5801 PF13393 Histidyl-tRNA synthetase Avi_5803 PF13692 Glycosyl transferases group 1 Avi_5806 PF03713 Domain of unknown function (DUF305) Avi_5807 PF13419 Haloacid dehalogenase-like hydrolase Avi_5808 PF03352 Methyladenine glycosylase Avi_5810 PF03734 L,D-transpeptidase catalytic domain Avi_5811 PF03734 L,D-transpeptidase catalytic domain Avi_5812 PF00196 Bacterial regulatory proteins, luxR family Avi_5813 PF01648 4'-phosphopantetheinyl transferase superfamily Avi_5814 PF02631 RecX family Avi_5815 PF00107 Zinc-binding dehydrogenase Avi_5815 PF16884 Avi_5815 Avi_5816 PF00583 Acetyltransferase (GNAT) family Avi_5819 PF00133 tRNA synthetases class I (I, L, M and V) Avi_5819 PF08264 Anticodon-binding domain of tRNA Avi_5820 PF00474 Sodium:solute symporter family Avi_5821 PF11755 Avi_5821 Avi_5823 PF00701 Dihydrodipicolinate synthetase family Avi_5826 PF01687 Riboflavin kinase Avi_5826 PF06574 FAD synthetase Avi_5827 PF13242 HAD-hyrolase-like Avi_5827 PF13344 Haloacid dehalogenase-like hydrolase Avi_5828 PF02417 Avi_5828 Avi_5829 PF00166 Chaperonin 10 Kd subunit Avi_5830 PF00118 TCP-1/cpn60 chaperonin family Avi_5833 PF02538 Avi_5833 Avi_5834 PF01968 Hydantoinase/oxoprolinase Avi_5834 PF05378 Avi_5834 Avi_5835 PF00005 ABC transporter Avi_5835 PF08402 TOBE domain Avi_5836 PF13416 Bacterial extracellular solute-binding protein Avi_5839 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5840 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5843 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Avi_5844 PF03435 Saccharopine dehydrogenase Avi_5844 PF16653 Avi_5844 Avi_5845 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Avi_5845 PF00364 Biotin-requiring enzyme Avi_5845 PF02785 Biotin carboxylase C-terminal domain Avi_5845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_5847 PF02626 Allophanate hydrolase subunit 2 Avi_5847 PF02682 Allophanate hydrolase subunit 1 Avi_5849 PF07286 Protein of unknown function (DUF1445) Avi_5851 PF03746 LamB/YcsF family Avi_5853 PF00392 Bacterial regulatory proteins, gntR family Avi_5853 PF07729 FCD domain Avi_5854 PF01037 AsnC family Avi_5854 PF13412 Winged helix-turn-helix DNA-binding Avi_5856 PF00291 Pyridoxal-phosphate dependent enzyme Avi_5858 PF13673 Acetyltransferase (GNAT) domain Avi_5861 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Avi_5862 PF00171 Aldehyde dehydrogenase family Avi_5863 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5863 PF03466 LysR substrate binding domain Avi_5865 PF03746 LamB/YcsF family Avi_5866 PF00364 Biotin-requiring enzyme Avi_5868 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Avi_5868 PF02785 Biotin carboxylase C-terminal domain Avi_5868 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_5869 PF02682 Allophanate hydrolase subunit 1 Avi_5870 PF02626 Allophanate hydrolase subunit 2 Avi_5871 PF00392 Bacterial regulatory proteins, gntR family Avi_5871 PF07729 FCD domain Avi_5873 PF00005 ABC transporter Avi_5874 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5876 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5877 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_5878 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_5880 PF13416 Bacterial extracellular solute-binding protein Avi_5881 PF00005 ABC transporter Avi_5881 PF08402 TOBE domain Avi_5882 PF01522 Polysaccharide deacetylase Avi_5884 PF02492 CobW/HypB/UreG, nucleotide-binding domain Avi_5884 PF07683 Cobalamin synthesis protein cobW C-terminal domain Avi_5885 PF13416 Bacterial extracellular solute-binding protein Avi_5886 PF01425 Amidase Avi_5887 PF01037 AsnC family Avi_5887 PF13412 Winged helix-turn-helix DNA-binding Avi_5888 PF01266 FAD dependent oxidoreductase Avi_5890 PF00916 Avi_5890 Avi_5890 PF01740 STAS domain Avi_5891 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Avi_5891 PF10414 Sirohaem synthase dimerisation region Avi_5891 PF13241 Putative NAD(P)-binding Avi_5892 PF00384 Molybdopterin oxidoreductase Avi_5892 PF01568 Molydopterin dinucleotide binding domain Avi_5892 PF04324 BFD-like [2Fe-2S] binding domain Avi_5892 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Avi_5893 PF13806 Rieske-like [2Fe-2S] domain Avi_5894 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Avi_5894 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Avi_5894 PF04324 BFD-like [2Fe-2S] binding domain Avi_5894 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_5895 PF00005 ABC transporter Avi_5896 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5897 PF13379 NMT1-like family Avi_5899 PF13379 NMT1-like family Avi_5900 PF00072 Response regulator receiver domain Avi_5900 PF03861 ANTAR domain Avi_5902 PF00805 Pentapeptide repeats (8 copies) Avi_5905 PF06037 Avi_5905 Avi_5907 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5907 PF03466 LysR substrate binding domain Avi_5908 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Avi_5908 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_5908 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_5909 PF02515 CoA-transferase family III Avi_5910 PF12680 SnoaL-like domain Avi_5913 PF03576 Peptidase family S58 Avi_5914 PF01063 Aminotransferase class IV Avi_5915 PF00144 Beta-lactamase Avi_5916 PF01244 Membrane dipeptidase (Peptidase family M19) Avi_5917 PF01964 ThiC family Avi_5917 PF13667 ThiC-associated domain Avi_5918 PF01266 FAD dependent oxidoreductase Avi_5919 PF02597 ThiS family Avi_5920 PF05690 Thiazole biosynthesis protein ThiG Avi_5922 PF02581 Thiamine monophosphate synthase/TENI Avi_5923 PF00224 Pyruvate kinase, barrel domain Avi_5924 PF02706 Chain length determinant protein Avi_5924 PF13614 AAA domain Avi_5924 PF13807 Avi_5924 Avi_5925 PF00535 Glycosyl transferase family 2 Avi_5926 PF00535 Glycosyl transferase family 2 Avi_5927 PF00535 Glycosyl transferase family 2 Avi_5929 PF00722 Glycosyl hydrolases family 16 Avi_5930 PF01757 Avi_5930 Avi_5931 PF13440 Avi_5931 Avi_5932 PF00535 Glycosyl transferase family 2 Avi_5933 PF04230 Avi_5933 Avi_5934 PF00535 Glycosyl transferase family 2 Avi_5935 PF11089 Avi_5935 Avi_5936 PF02397 Avi_5936 Avi_5937 PF02563 Polysaccharide biosynthesis/export protein Avi_5937 PF10531 SLBB domain Avi_5938 PF04932 Avi_5938 Avi_5941 PF07369 Protein of unknown function (DUF1488) Avi_5943 PF02230 Phospholipase/Carboxylesterase Avi_5945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_5946 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_5946 PF03466 LysR substrate binding domain Avi_5948 PF02563 Polysaccharide biosynthesis/export protein Avi_5948 PF10531 SLBB domain Avi_5949 PF00440 Bacterial regulatory proteins, tetR family Avi_5949 PF14246 AefR-like transcriptional repressor, C-terminal region Avi_5950 PF03055 Retinal pigment epithelial membrane protein Avi_5952 PF04632 Avi_5952 Avi_5953 PF00171 Aldehyde dehydrogenase family Avi_5954 PF00440 Bacterial regulatory proteins, tetR family Avi_5954 PF14246 AefR-like transcriptional repressor, C-terminal region Avi_5955 PF05962 HutD Avi_5956 PF01175 Urocanase Avi_5956 PF17391 Avi_5956 Avi_5956 PF17392 Avi_5956 Avi_5957 PF05013 N-formylglutamate amidohydrolase Avi_5958 PF00221 Aromatic amino acid lyase Avi_5959 PF01979 Amidohydrolase family Avi_5960 PF01979 Amidohydrolase family Avi_5962 PF00296 Luciferase-like monooxygenase Avi_5963 PF00392 Bacterial regulatory proteins, gntR family Avi_5963 PF07702 UTRA domain Avi_5964 PF00005 ABC transporter Avi_5965 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5966 PF00528 Binding-protein-dependent transport system inner membrane component Avi_5967 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_5968 PF00485 Phosphoribulokinase / Uridine kinase family Avi_5969 PF00005 ABC transporter Avi_5970 PF02653 Avi_5970 Avi_5971 PF13407 Periplasmic binding protein domain Avi_5972 PF00480 ROK family Avi_5972 PF13412 Winged helix-turn-helix DNA-binding Avi_5973 PF05025 RbsD / FucU transport protein family Avi_5975 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_5976 PF01037 AsnC family Avi_5976 PF13404 AsnC-type helix-turn-helix domain Avi_5977 PF00491 Arginase family Avi_5979 PF02423 Ornithine cyclodeaminase/mu-crystallin family Avi_5980 PF01679 Avi_5980 Avi_5981 PF07470 Glycosyl Hydrolase Family 88 Avi_5982 PF03544 Gram-negative bacterial TonB protein C-terminal Avi_5983 PF02472 Biopolymer transport protein ExbD/TolR Avi_5985 PF01618 Avi_5985 Avi_5986 PF07043 Avi_5986 Avi_5989 PF00027 Cyclic nucleotide-binding domain Avi_5989 PF13545 Crp-like helix-turn-helix domain Avi_5992 PF04542 Sigma-70 region 2 Avi_5992 PF08281 Sigma-70, region 4 Avi_5993 PF07043 Avi_5993 Avi_5998 PF10005 Avi_5998 Avi_5998 PF15887 Avi_5998 Avi_5999 PF07536 Avi_5999 Avi_6000 PF00072 Response regulator receiver domain Avi_6000 PF08281 Sigma-70, region 4 Avi_6002 PF00210 Ferritin-like domain Avi_6004 PF05957 Avi_6004 Avi_6005 PF05532 CsbD-like Avi_6007 PF01068 ATP dependent DNA ligase domain Avi_6007 PF04675 DNA ligase N terminus Avi_6007 PF04679 ATP dependent DNA ligase C terminal region Avi_6009 PF01037 AsnC family Avi_6010 PF00202 Aminotransferase class-III Avi_6010 PF01636 Phosphotransferase enzyme family Avi_6011 PF00551 Formyl transferase Avi_6012 PF00150 Cellulase (glycosyl hydrolase family 5) Avi_6014 PF02706 Chain length determinant protein Avi_6014 PF13807 Avi_6014 Avi_6015 PF00534 Glycosyl transferases group 1 Avi_6015 PF13439 Glycosyltransferase Family 4 Avi_6017 PF13440 Avi_6017 Avi_6017 PF14667 Polysaccharide biosynthesis C-terminal domain Avi_6018 PF12146 Putative lysophospholipase Avi_6020 PF08893 Avi_6020 Avi_6022 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Avi_6022 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_6023 PF00550 Phosphopantetheine attachment site Avi_6024 PF13353 4Fe-4S single cluster domain Avi_6025 PF00152 tRNA synthetases class II (D, K and N) Avi_6026 PF01132 Elongation factor P (EF-P) OB domain Avi_6026 PF08207 Elongation factor P (EF-P) KOW-like domain Avi_6026 PF09285 Elongation factor P, C-terminal Avi_6027 PF02321 Outer membrane efflux protein Avi_6028 PF00873 AcrB/AcrD/AcrF family Avi_6029 PF13533 Biotin-lipoyl like Avi_6030 PF00440 Bacterial regulatory proteins, tetR family Avi_6031 PF01259 SAICAR synthetase Avi_6032 PF01891 Cobalt uptake substrate-specific transmembrane region Avi_6038 PF02563 Polysaccharide biosynthesis/export protein Avi_6039 PF00069 Protein kinase domain Avi_6040 PF07228 Stage II sporulation protein E (SpoIIE) Avi_6040 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) Avi_6041 PF06744 Avi_6041 Avi_6041 PF06761 Avi_6041 Avi_6041 PF14331 Avi_6041 Avi_6042 PF00691 OmpA family Avi_6042 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) Avi_6043 PF05936 Avi_6043 Avi_6044 PF00498 FHA domain Avi_6045 PF06996 Avi_6045 Avi_6046 PF05947 Avi_6046 Avi_6047 PF04965 Gene 25-like lysozyme Avi_6048 PF07024 ImpE protein Avi_6049 PF05943 Avi_6049 Avi_6050 PF05943 Avi_6050 Avi_6051 PF05591 Avi_6051 Avi_6052 PF06812 Avi_6052 Avi_6053 PF00004 ATPase family associated with various cellular activities (AAA) Avi_6053 PF02861 Clp amino terminal domain Avi_6053 PF07724 AAA domain (Cdc48 subfamily) Avi_6053 PF10431 C-terminal, D2-small domain, of ClpB protein Avi_6054 PF05638 Protein of unknown function (DUF796) Avi_6059 PF02355 Protein export membrane protein Avi_6059 PF07549 SecD/SecF GG Motif Avi_6060 PF13454 FAD-NAD(P)-binding Avi_6061 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_6062 PF00296 Luciferase-like monooxygenase Avi_6064 PF12840 Helix-turn-helix domain Avi_6065 PF01758 Sodium Bile acid symporter family Avi_6066 PF03960 ArsC family Avi_6068 PF03358 NADPH-dependent FMN reductase Avi_6069 PF07690 Major Facilitator Superfamily Avi_6070 PF00072 Response regulator receiver domain Avi_6070 PF00486 Transcriptional regulatory protein, C terminal Avi_6071 PF00512 His Kinase A (phospho-acceptor) domain Avi_6071 PF00582 Universal stress protein family Avi_6071 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_6071 PF02702 Osmosensitive K+ channel His kinase sensor domain Avi_6071 PF13493 Domain of unknown function (DUF4118) Avi_6072 PF02669 Avi_6072 Avi_6073 PF00122 E1-E2 ATPase Avi_6073 PF00702 haloacid dehalogenase-like hydrolase Avi_6074 PF03814 Avi_6074 Avi_6076 PF13515 Avi_6076 Avi_6077 PF00270 DEAD/DEAH box helicase Avi_6077 PF00271 Helicase conserved C-terminal domain Avi_6077 PF00570 HRDC domain Avi_6077 PF09382 RQC domain Avi_6077 PF16124 Avi_6077 Avi_6078 PF01494 FAD binding domain Avi_6079 PF01266 FAD dependent oxidoreductase Avi_6080 PF00842 Alanine racemase, C-terminal domain Avi_6080 PF01168 Alanine racemase, N-terminal domain Avi_6081 PF01037 AsnC family Avi_6081 PF13412 Winged helix-turn-helix DNA-binding Avi_6082 PF00392 Bacterial regulatory proteins, gntR family Avi_6082 PF07729 FCD domain Avi_6083 PF06684 Amino acid synthesis Avi_6084 PF12697 Alpha/beta hydrolase family Avi_6086 PF01613 Flavin reductase like domain Avi_6087 PF00296 Luciferase-like monooxygenase Avi_6088 PF00171 Aldehyde dehydrogenase family Avi_6089 PF13416 Bacterial extracellular solute-binding protein Avi_6090 PF00528 Binding-protein-dependent transport system inner membrane component Avi_6091 PF00528 Binding-protein-dependent transport system inner membrane component Avi_6092 PF00005 ABC transporter Avi_6092 PF08402 TOBE domain Avi_6093 PF00171 Aldehyde dehydrogenase family Avi_6094 PF04909 Amidohydrolase Avi_6095 PF05025 RbsD / FucU transport protein family Avi_6096 PF00248 Aldo/keto reductase family Avi_6097 PF02653 Avi_6097 Avi_6098 PF02653 Avi_6098 Avi_6099 PF00005 ABC transporter Avi_6100 PF13407 Periplasmic binding protein domain Avi_6101 PF00465 Iron-containing alcohol dehydrogenase Avi_6102 PF00392 Bacterial regulatory proteins, gntR family Avi_6102 PF07729 FCD domain Avi_6103 PF04295 Avi_6103 Avi_6103 PF08666 SAF domain Avi_6104 PF00732 GMC oxidoreductase Avi_6104 PF05199 GMC oxidoreductase Avi_6105 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_6106 PF00465 Iron-containing alcohol dehydrogenase Avi_6107 PF00512 His Kinase A (phospho-acceptor) domain Avi_6107 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_6107 PF08521 Avi_6107 Avi_6108 PF00072 Response regulator receiver domain Avi_6108 PF00486 Transcriptional regulatory protein, C terminal Avi_6109 PF13416 Bacterial extracellular solute-binding protein Avi_6110 PF03401 Tripartite tricarboxylate transporter family receptor Avi_6111 PF07331 Avi_6111 Avi_6112 PF01970 Avi_6112 Avi_6115 PF04332 Avi_6115 Avi_6117 PF00108 Thiolase, N-terminal domain Avi_6117 PF02803 Thiolase, C-terminal domain Avi_6118 PF01144 Coenzyme A transferase Avi_6120 PF01144 Coenzyme A transferase Avi_6121 PF01614 Bacterial transcriptional regulator Avi_6121 PF09339 IclR helix-turn-helix domain Avi_6122 PF02311 AraC-like ligand binding domain Avi_6122 PF12833 Helix-turn-helix domain Avi_6123 PF01494 FAD binding domain Avi_6124 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_6124 PF03466 LysR substrate binding domain Avi_6126 PF12697 Alpha/beta hydrolase family Avi_6127 PF02627 Carboxymuconolactone decarboxylase family Avi_6128 PF00775 Dioxygenase Avi_6128 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal Avi_6129 PF00775 Dioxygenase Avi_6130 PF00206 Lyase Avi_6131 PF00107 Zinc-binding dehydrogenase Avi_6131 PF08240 Alcohol dehydrogenase GroES-like domain Avi_6133 PF01580 FtsK/SpoIIIE family Avi_6133 PF09397 Ftsk gamma domain Avi_6134 PF00005 ABC transporter Avi_6135 PF00528 Binding-protein-dependent transport system inner membrane component Avi_6136 PF13343 Bacterial extracellular solute-binding protein Avi_6137 PF00924 Mechanosensitive ion channel Avi_6139 PF07886 Avi_6139 Avi_6143 PF00005 ABC transporter Avi_6143 PF00664 ABC transporter transmembrane region Avi_6144 PF00512 His Kinase A (phospho-acceptor) domain Avi_6144 PF00672 HAMP domain Avi_6144 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_6145 PF00072 Response regulator receiver domain Avi_6145 PF00486 Transcriptional regulatory protein, C terminal Avi_6146 PF06912 Avi_6146 Avi_6147 PF00589 Phage integrase family Avi_6150 PF13392 HNH endonuclease Avi_6154 PF00712 DNA polymerase III beta subunit, N-terminal domain Avi_6154 PF02767 DNA polymerase III beta subunit, central domain Avi_6154 PF02768 DNA polymerase III beta subunit, C-terminal domain Avi_6161 PF02195 ParB-like nuclease domain Avi_6163 PF11319 Avi_6163 Avi_6164 PF01381 Helix-turn-helix Avi_6165 PF12844 Helix-turn-helix domain Avi_6166 PF01381 Helix-turn-helix Avi_6173 PF09397 Ftsk gamma domain Avi_6177 PF00145 C-5 cytosine-specific DNA methylase Avi_6178 PF13730 Avi_6178 Avi_6181 PF05119 Avi_6181 Avi_6182 PF03354 Avi_6182 Avi_6184 PF04860 Phage portal protein Avi_6185 PF00574 Clp protease Avi_6186 PF05065 Phage capsid family Avi_6188 PF05135 Phage gp6-like head-tail connector protein Avi_6189 PF05521 Phage head-tail joining protein Avi_6192 PF11367 Protein of unknown function (DUF3168) Avi_6196 PF10145 Avi_6196 Avi_6201 PF13550 Avi_6201 Avi_6204 PF00182 Chitinase class I Avi_6212 PF02104 Avi_6212 Avi_6213 PF03626 Avi_6213 Avi_6214 PF00510 Cytochrome c oxidase subunit III Avi_6215 PF00115 Cytochrome C and Quinol oxidase polypeptide I Avi_6217 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Avi_6217 PF06481 COX Aromatic Rich Motif Avi_6218 PF04542 Sigma-70 region 2 Avi_6218 PF08281 Sigma-70, region 4 Avi_6220 PF01027 Inhibitor of apoptosis-promoting Bax1 Avi_6221 PF00127 Copper binding proteins, plastocyanin/azurin family Avi_6222 PF07298 Avi_6222 Avi_6224 PF00722 Glycosyl hydrolases family 16 Avi_6225 PF00375 Sodium:dicarboxylate symporter family Avi_6227 PF00512 His Kinase A (phospho-acceptor) domain Avi_6227 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_6228 PF00072 Response regulator receiver domain Avi_6228 PF00158 Sigma-54 interaction domain Avi_6229 PF00440 Bacterial regulatory proteins, tetR family Avi_6233 PF00480 ROK family Avi_6234 PF01979 Amidohydrolase family Avi_6235 PF01380 SIS domain Avi_6236 PF00392 Bacterial regulatory proteins, gntR family Avi_6236 PF07702 UTRA domain Avi_6237 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_6237 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Avi_6238 PF00528 Binding-protein-dependent transport system inner membrane component Avi_6239 PF00528 Binding-protein-dependent transport system inner membrane component Avi_6240 PF13416 Bacterial extracellular solute-binding protein Avi_6242 PF00005 ABC transporter Avi_6242 PF08402 TOBE domain Avi_6243 PF01168 Alanine racemase, N-terminal domain Avi_6243 PF14031 Putative serine dehydratase domain Avi_6244 PF07171 MlrC C-terminus Avi_6244 PF07364 Protein of unknown function (DUF1485) Avi_6248 PF01042 Endoribonuclease L-PSP Avi_6249 PF01380 SIS domain Avi_6249 PF01418 Helix-turn-helix domain, rpiR family Avi_6250 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_6251 PF00728 Glycosyl hydrolase family 20, catalytic domain Avi_6252 PF07171 MlrC C-terminus Avi_6252 PF07364 Protein of unknown function (DUF1485) Avi_6253 PF07690 Major Facilitator Superfamily Avi_6254 PF03932 CutC family Avi_6255 PF03061 Thioesterase superfamily Avi_6256 PF00440 Bacterial regulatory proteins, tetR family Avi_6257 PF00933 Glycosyl hydrolase family 3 N terminal domain Avi_6257 PF01915 Glycosyl hydrolase family 3 C-terminal domain Avi_6257 PF07691 PA14 domain Avi_6257 PF14310 Fibronectin type III-like domain Avi_6258 PF00512 His Kinase A (phospho-acceptor) domain Avi_6258 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_6258 PF08521 Avi_6258 Avi_6259 PF00072 Response regulator receiver domain Avi_6259 PF00486 Transcriptional regulatory protein, C terminal Avi_6260 PF13670 Avi_6260 Avi_6262 PF06210 Avi_6262 Avi_6264 PF00596 Class II Aldolase and Adducin N-terminal domain Avi_6264 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_6265 PF00455 Avi_6265 Avi_6265 PF08220 DeoR-like helix-turn-helix domain Avi_6266 PF13407 Periplasmic binding protein domain Avi_6267 PF00005 ABC transporter Avi_6268 PF02653 Avi_6268 Avi_6269 PF02653 Avi_6269 Avi_6270 PF05336 Domain of unknown function (DUF718) Avi_6271 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Avi_6272 PF01557 Fumarylacetoacetate (FAA) hydrolase family Avi_6273 PF00563 EAL domain Avi_6273 PF00990 GGDEF domain Avi_6273 PF13185 GAF domain Avi_6274 PF01177 Asp/Glu/Hydantoin racemase Avi_6275 PF00528 Binding-protein-dependent transport system inner membrane component Avi_6277 PF00528 Binding-protein-dependent transport system inner membrane component Avi_6278 PF13416 Bacterial extracellular solute-binding protein Avi_6279 PF00005 ABC transporter Avi_6279 PF08402 TOBE domain Avi_6280 PF00392 Bacterial regulatory proteins, gntR family Avi_6280 PF07729 FCD domain Avi_6283 PF02245 Methylpurine-DNA glycosylase (MPG) Avi_6284 PF00005 ABC transporter Avi_6285 PF02687 Avi_6285 Avi_6285 PF12704 MacB-like periplasmic core domain Avi_6286 PF07143 Hydroxyneurosporene synthase (CrtC) Avi_6286 PF17186 Avi_6286 Avi_6287 PF06751 Ethanolamine ammonia lyase large subunit (EutB) Avi_6288 PF05985 Ethanolamine ammonia-lyase light chain (EutC) Avi_7000 PF13614 AAA domain Avi_7001 PF02195 ParB-like nuclease domain Avi_7001 PF07506 Avi_7001 Avi_7002 PF03428 Avi_7002 Avi_7002 PF11800 Avi_7002 Avi_7004 PF13738 Pyridine nucleotide-disulphide oxidoreductase Avi_7005 PF00990 GGDEF domain Avi_7008 PF00589 Phage integrase family Avi_7013 PF07883 Cupin domain Avi_7014 PF02615 Malate/L-lactate dehydrogenase Avi_7015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7016 PF01968 Hydantoinase/oxoprolinase Avi_7016 PF05378 Avi_7016 Avi_7017 PF02538 Avi_7017 Avi_7018 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7019 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7020 PF00005 ABC transporter Avi_7020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7021 PF00005 ABC transporter Avi_7021 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7022 PF05544 Proline racemase Avi_7026 PF00005 ABC transporter Avi_7026 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7027 PF00005 ABC transporter Avi_7027 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7028 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7028 PF12911 Avi_7028 Avi_7029 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7032 PF00440 Bacterial regulatory proteins, tetR family Avi_7034 PF04326 Divergent AAA domain Avi_7034 PF13749 ATP-dependent DNA helicase recG C-terminal Avi_7035 PF02195 ParB-like nuclease domain Avi_7039 PF00106 short chain dehydrogenase Avi_7040 PF06719 Avi_7040 Avi_7040 PF12833 Helix-turn-helix domain Avi_7042 PF00216 Bacterial DNA-binding protein Avi_7043 PF01527 Transposase Avi_7044 PF05717 Avi_7044 Avi_7045 PF03050 Avi_7045 Avi_7045 PF13005 Avi_7045 Avi_7045 PF13007 Avi_7045 Avi_7045 PF13817 Avi_7045 Avi_7047 PF05406 WGR domain Avi_7050 PF00847 AP2 domain Avi_7054 PF13665 Avi_7054 Avi_7055 PF09937 Avi_7055 Avi_7056 PF05954 Phage late control gene D protein (GPD) Avi_7057 PF05406 WGR domain Avi_7061 PF02534 Type IV secretory system Conjugative DNA transfer Avi_7062 PF06412 Avi_7062 Avi_7063 PF07820 Avi_7063 Avi_7064 PF03389 MobA/MobL family Avi_7064 PF13538 UvrD-like helicase C-terminal domain Avi_7064 PF13604 AAA domain Avi_7065 PF10502 Signal peptidase, peptidase S26 Avi_7066 PF00795 Carbon-nitrogen hydrolase Avi_7067 PF06871 Avi_7067 Avi_7070 PF02311 AraC-like ligand binding domain Avi_7070 PF12833 Helix-turn-helix domain Avi_7072 PF00892 EamA-like transporter family Avi_7073 PF01381 Helix-turn-helix Avi_7074 PF13610 Avi_7074 Avi_7075 PF07690 Major Facilitator Superfamily Avi_7076 PF08240 Alcohol dehydrogenase GroES-like domain Avi_7077 PF03737 Demethylmenaquinone methyltransferase Avi_7079 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Avi_7079 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Avi_7080 PF01614 Bacterial transcriptional regulator Avi_7080 PF09339 IclR helix-turn-helix domain Avi_7081 PF03401 Tripartite tricarboxylate transporter family receptor Avi_7082 PF07331 Avi_7082 Avi_7083 PF01970 Avi_7083 Avi_7084 PF01070 FMN-dependent dehydrogenase Avi_7085 PF13610 Avi_7085 Avi_7086 PF00440 Bacterial regulatory proteins, tetR family Avi_7086 PF13305 WHG domain Avi_7087 PF13458 Periplasmic binding protein Avi_7088 PF00005 ABC transporter Avi_7089 PF00005 ABC transporter Avi_7090 PF02653 Avi_7090 Avi_7091 PF02653 Avi_7091 Avi_7092 PF01425 Amidase Avi_7093 PF13340 Avi_7093 Avi_7095 PF13586 Avi_7095 Avi_7096 PF11578 Protein of unknown function (DUF3237) Avi_7098 PF01810 Avi_7098 Avi_7100 PF06089 Avi_7100 Avi_7103 PF01609 Transposase DDE domain Avi_7104 PF13737 Avi_7104 Avi_7106 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Avi_7108 PF00391 PEP-utilising enzyme, mobile domain Avi_7109 PF07722 Peptidase C26 Avi_7110 PF12804 MobA-like NTP transferase domain Avi_7111 PF01810 Avi_7111 Avi_7112 PF01066 CDP-alcohol phosphatidyltransferase Avi_7114 PF13610 Avi_7114 Avi_7117 PF01609 Transposase DDE domain Avi_7120 PF13737 Avi_7120 Avi_7121 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_7121 PF03466 LysR substrate binding domain Avi_7122 PF05977 Transmembrane secretion effector Avi_7123 PF00795 Carbon-nitrogen hydrolase Avi_7125 PF00857 Isochorismatase family Avi_7126 PF00296 Luciferase-like monooxygenase Avi_7127 PF01425 Amidase Avi_7128 PF01613 Flavin reductase like domain Avi_7129 PF13416 Bacterial extracellular solute-binding protein Avi_7130 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7131 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7132 PF00005 ABC transporter Avi_7132 PF08402 TOBE domain Avi_7134 PF00665 Integrase core domain Avi_7135 PF05016 Plasmid stabilisation system protein Avi_7136 PF03693 Uncharacterised protein family (UPF0156) Avi_7144 PF00691 OmpA family Avi_7144 PF16234 Avi_7144 Avi_7146 PF14279 Avi_7146 Avi_7148 PF13610 Avi_7148 Avi_7149 PF00067 Cytochrome P450 Avi_7150 PF13649 Methyltransferase domain Avi_7152 PF00685 Sulfotransferase domain Avi_7153 PF05721 Phytanoyl-CoA dioxygenase (PhyH) Avi_7154 PF13610 Avi_7154 Avi_7155 PF00296 Luciferase-like monooxygenase Avi_7156 PF00005 ABC transporter Avi_7156 PF12399 Branched-chain amino acid ATP-binding cassette transporter Avi_7157 PF02653 Avi_7157 Avi_7158 PF02653 Avi_7158 Avi_7159 PF13458 Periplasmic binding protein Avi_7160 PF13458 Periplasmic binding protein Avi_7161 PF00005 ABC transporter Avi_7162 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_7162 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_7163 PF09084 NMT1/THI5 like Avi_7165 PF00005 ABC transporter Avi_7166 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7167 PF00296 Luciferase-like monooxygenase Avi_7168 PF03171 2OG-Fe(II) oxygenase superfamily Avi_7168 PF14226 non-haem dioxygenase in morphine synthesis N-terminal Avi_7169 PF02627 Carboxymuconolactone decarboxylase family Avi_7171 PF00296 Luciferase-like monooxygenase Avi_7172 PF00005 ABC transporter Avi_7172 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7173 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7174 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7179 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_7179 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_7179 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_7180 PF09084 NMT1/THI5 like Avi_7181 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7182 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7183 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7183 PF12911 Avi_7183 Avi_7185 PF00005 ABC transporter Avi_7185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7187 PF00005 ABC transporter Avi_7187 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7188 PF00248 Aldo/keto reductase family Avi_7189 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_7189 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_7190 PF00881 Nitroreductase family Avi_7191 PF00005 ABC transporter Avi_7191 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7192 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7193 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7194 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7195 PF00296 Luciferase-like monooxygenase Avi_7196 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7197 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7198 PF09084 NMT1/THI5 like Avi_7199 PF00005 ABC transporter Avi_7200 PF00296 Luciferase-like monooxygenase Avi_7201 PF00005 ABC transporter Avi_7201 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7202 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7203 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7206 PF00296 Luciferase-like monooxygenase Avi_7207 PF00583 Acetyltransferase (GNAT) family Avi_7208 PF00296 Luciferase-like monooxygenase Avi_7209 PF00296 Luciferase-like monooxygenase Avi_7210 PF00296 Luciferase-like monooxygenase Avi_7212 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7213 PF11287 Avi_7213 Avi_7214 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7215 PF01546 Peptidase family M20/M25/M40 Avi_7215 PF07687 Peptidase dimerisation domain Avi_7216 PF00296 Luciferase-like monooxygenase Avi_7220 PF09084 NMT1/THI5 like Avi_7221 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7222 PF00005 ABC transporter Avi_7224 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_7225 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7227 PF00005 ABC transporter Avi_7228 PF03180 NLPA lipoprotein Avi_7230 PF00005 ABC transporter Avi_7230 PF09383 NIL domain Avi_7231 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7233 PF03180 NLPA lipoprotein Avi_7234 PF00005 ABC transporter Avi_7234 PF09383 NIL domain Avi_7235 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7238 PF00392 Bacterial regulatory proteins, gntR family Avi_7238 PF07729 FCD domain Avi_7239 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_7240 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7241 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7242 PF01019 Gamma-glutamyltranspeptidase Avi_7245 PF02230 Phospholipase/Carboxylesterase Avi_7250 PF01965 DJ-1/PfpI family Avi_7250 PF12833 Helix-turn-helix domain Avi_7251 PF05544 Proline racemase Avi_7252 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7253 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7254 PF00005 ABC transporter Avi_7255 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Avi_7256 PF01266 FAD dependent oxidoreductase Avi_7257 PF00171 Aldehyde dehydrogenase family Avi_7258 PF00701 Dihydrodipicolinate synthetase family Avi_7259 PF00392 Bacterial regulatory proteins, gntR family Avi_7259 PF07729 FCD domain Avi_7262 PF00392 Bacterial regulatory proteins, gntR family Avi_7262 PF07729 FCD domain Avi_7263 PF13610 Avi_7263 Avi_7264 PF13610 Avi_7264 Avi_7265 PF01633 Choline/ethanolamine kinase Avi_7266 PF01636 Phosphotransferase enzyme family Avi_7267 PF01546 Peptidase family M20/M25/M40 Avi_7268 PF00455 Avi_7268 Avi_7268 PF08220 DeoR-like helix-turn-helix domain Avi_7269 PF00005 ABC transporter Avi_7269 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7270 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7271 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7272 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7273 PF01028 Eukaryotic DNA topoisomerase I, catalytic core Avi_7274 PF03797 Autotransporter beta-domain Avi_7276 PF07183 Avi_7276 Avi_7277 PF04079 Putative transcriptional regulators (Ypuh-like) Avi_7278 PF00440 Bacterial regulatory proteins, tetR family Avi_7280 PF02630 SCO1/SenC Avi_7282 PF16576 Avi_7282 Avi_7283 PF00873 AcrB/AcrD/AcrF family Avi_7284 PF04773 FecR protein Avi_7284 PF16220 Avi_7284 Avi_7284 PF16344 Avi_7284 Avi_7286 PF04542 Sigma-70 region 2 Avi_7286 PF08281 Sigma-70, region 4 Avi_7287 PF00005 ABC transporter Avi_7289 PF01032 FecCD transport family Avi_7290 PF01032 FecCD transport family Avi_7292 PF01497 Periplasmic binding protein Avi_7293 PF00593 TonB dependent receptor Avi_7293 PF07660 Secretin and TonB N terminus short domain Avi_7293 PF07715 TonB-dependent Receptor Plug Domain Avi_7294 PF11575 Avi_7294 Avi_7295 PF00975 Thioesterase domain Avi_7296 PF00550 Phosphopantetheine attachment site Avi_7296 PF00668 Condensation domain Avi_7298 PF00501 AMP-binding enzyme Avi_7298 PF00550 Phosphopantetheine attachment site Avi_7298 PF00668 Condensation domain Avi_7298 PF13193 AMP-binding enzyme C-terminal domain Avi_7299 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_7299 PF00550 Phosphopantetheine attachment site Avi_7299 PF00698 Acyl transferase domain Avi_7299 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_7299 PF08659 KR domain Avi_7299 PF16197 Avi_7299 Avi_7303 PF00202 Aminotransferase class-III Avi_7304 PF13649 Methyltransferase domain Avi_7306 PF00501 AMP-binding enzyme Avi_7306 PF00550 Phosphopantetheine attachment site Avi_7306 PF00668 Condensation domain Avi_7306 PF07993 Male sterility protein Avi_7306 PF13193 AMP-binding enzyme C-terminal domain Avi_7308 PF00501 AMP-binding enzyme Avi_7308 PF00550 Phosphopantetheine attachment site Avi_7309 PF00109 Beta-ketoacyl synthase, N-terminal domain Avi_7309 PF00550 Phosphopantetheine attachment site Avi_7309 PF00698 Acyl transferase domain Avi_7309 PF02801 Beta-ketoacyl synthase, C-terminal domain Avi_7309 PF08659 KR domain Avi_7309 PF16197 Avi_7309 Avi_7310 PF00296 Luciferase-like monooxygenase Avi_7311 PF00501 AMP-binding enzyme Avi_7311 PF00550 Phosphopantetheine attachment site Avi_7311 PF00668 Condensation domain Avi_7311 PF13193 AMP-binding enzyme C-terminal domain Avi_7312 PF01554 MatE Avi_7313 PF02082 Transcriptional regulator Avi_7320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_7322 PF01112 Asparaginase Avi_7323 PF04951 D-aminopeptidase Avi_7325 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7325 PF12911 Avi_7325 Avi_7327 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7328 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7329 PF00005 ABC transporter Avi_7329 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7330 PF01380 SIS domain Avi_7330 PF01418 Helix-turn-helix domain, rpiR family Avi_7332 PF12802 MarR family Avi_7333 PF00480 ROK family Avi_7333 PF12802 MarR family Avi_7334 PF01074 Glycosyl hydrolases family 38 N-terminal domain Avi_7334 PF07748 Glycosyl hydrolases family 38 C-terminal domain Avi_7334 PF09261 Alpha mannosidase, middle domain Avi_7335 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7336 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7337 PF13416 Bacterial extracellular solute-binding protein Avi_7338 PF00005 ABC transporter Avi_7338 PF08402 TOBE domain Avi_7339 PF00132 Bacterial transferase hexapeptide (six repeats) Avi_7340 PF10022 Avi_7340 Avi_7341 PF01547 Bacterial extracellular solute-binding protein Avi_7342 PF04854 Avi_7342 Avi_7343 PF00005 ABC transporter Avi_7343 PF08402 TOBE domain Avi_7344 PF07470 Glycosyl Hydrolase Family 88 Avi_7346 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7347 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7349 PF07940 Heparinase II/III-like protein Avi_7351 PF00392 Bacterial regulatory proteins, gntR family Avi_7351 PF07729 FCD domain Avi_7352 PF05406 WGR domain Avi_7353 PF05025 RbsD / FucU transport protein family Avi_7355 PF00005 ABC transporter Avi_7355 PF08402 TOBE domain Avi_7357 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7358 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7360 PF05025 RbsD / FucU transport protein family Avi_7361 PF00294 pfkB family carbohydrate kinase Avi_7362 PF01261 Xylose isomerase-like TIM barrel Avi_7364 PF13407 Periplasmic binding protein domain Avi_7365 PF00005 ABC transporter Avi_7366 PF02653 Avi_7366 Avi_7367 PF01380 SIS domain Avi_7367 PF01418 Helix-turn-helix domain, rpiR family Avi_7369 PF00294 pfkB family carbohydrate kinase Avi_7370 PF02311 AraC-like ligand binding domain Avi_7370 PF12833 Helix-turn-helix domain Avi_7371 PF08240 Alcohol dehydrogenase GroES-like domain Avi_7371 PF13602 Zinc-binding dehydrogenase Avi_7373 PF02661 Fic/DOC family Avi_7373 PF13776 Avi_7373 Avi_7374 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Avi_7374 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Avi_7375 PF00106 short chain dehydrogenase Avi_7376 PF02653 Avi_7376 Avi_7377 PF00005 ABC transporter Avi_7378 PF13407 Periplasmic binding protein domain Avi_7379 PF00356 Bacterial regulatory proteins, lacI family Avi_7379 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Avi_7381 PF07690 Major Facilitator Superfamily Avi_7382 PF12833 Helix-turn-helix domain Avi_7382 PF12852 Cupin Avi_7384 PF00462 Glutaredoxin Avi_7386 PF07972 NrdI Flavodoxin like Avi_7387 PF00317 Ribonucleotide reductase, all-alpha domain Avi_7387 PF02867 Ribonucleotide reductase, barrel domain Avi_7387 PF08343 Ribonucleotide reductase N-terminal Avi_7388 PF00268 Ribonucleotide reductase, small chain Avi_7389 PF12840 Helix-turn-helix domain Avi_7390 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Avi_7392 PF01425 Amidase Avi_7393 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_7394 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7395 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7396 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_7396 PF03466 LysR substrate binding domain Avi_7397 PF00266 Aminotransferase class-V Avi_7398 PF02423 Ornithine cyclodeaminase/mu-crystallin family Avi_7399 PF01266 FAD dependent oxidoreductase Avi_7400 PF01042 Endoribonuclease L-PSP Avi_7402 PF01614 Bacterial transcriptional regulator Avi_7402 PF09339 IclR helix-turn-helix domain Avi_7403 PF03807 NADP oxidoreductase coenzyme F420-dependent Avi_7405 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_7406 PF01613 Flavin reductase like domain Avi_7407 PF00593 TonB dependent receptor Avi_7409 PF01614 Bacterial transcriptional regulator Avi_7409 PF09339 IclR helix-turn-helix domain Avi_7410 PF01177 Asp/Glu/Hydantoin racemase Avi_7413 PF01144 Coenzyme A transferase Avi_7414 PF10604 Polyketide cyclase / dehydrase and lipid transport Avi_7416 PF07690 Major Facilitator Superfamily Avi_7417 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_7417 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Avi_7418 PF02627 Carboxymuconolactone decarboxylase family Avi_7419 PF01738 Dienelactone hydrolase family Avi_7421 PF00106 short chain dehydrogenase Avi_7422 PF02627 Carboxymuconolactone decarboxylase family Avi_7423 PF01557 Fumarylacetoacetate (FAA) hydrolase family Avi_7425 PF01494 FAD binding domain Avi_7426 PF03972 MmgE/PrpD family Avi_7427 PF03928 Domain of unknown function (DUF336) Avi_7428 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Avi_7430 PF01557 Fumarylacetoacetate (FAA) hydrolase family Avi_7431 PF01614 Bacterial transcriptional regulator Avi_7432 PF02627 Carboxymuconolactone decarboxylase family Avi_7433 PF02653 Avi_7433 Avi_7434 PF02653 Avi_7434 Avi_7436 PF00005 ABC transporter Avi_7437 PF00005 ABC transporter Avi_7438 PF10518 TAT (twin-arginine translocation) pathway signal sequence Avi_7438 PF13458 Periplasmic binding protein Avi_7439 PF01494 FAD binding domain Avi_7440 PF00465 Iron-containing alcohol dehydrogenase Avi_7441 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_7441 PF03466 LysR substrate binding domain Avi_7443 PF00775 Dioxygenase Avi_7443 PF04444 Catechol dioxygenase N terminus Avi_7446 PF01074 Glycosyl hydrolases family 38 N-terminal domain Avi_7446 PF07748 Glycosyl hydrolases family 38 C-terminal domain Avi_7446 PF09261 Alpha mannosidase, middle domain Avi_7450 PF13416 Bacterial extracellular solute-binding protein Avi_7451 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7452 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7453 PF00005 ABC transporter Avi_7454 PF00480 ROK family Avi_7455 PF01261 Xylose isomerase-like TIM barrel Avi_7457 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Avi_7458 PF01810 Avi_7458 Avi_7459 PF01037 AsnC family Avi_7459 PF13404 AsnC-type helix-turn-helix domain Avi_7466 PF03167 Uracil DNA glycosylase superfamily Avi_7466 PF13566 Avi_7466 Avi_7470 PF13610 Avi_7470 Avi_7472 PF00356 Bacterial regulatory proteins, lacI family Avi_7472 PF13377 Periplasmic binding protein-like domain Avi_7473 PF13407 Periplasmic binding protein domain Avi_7475 PF00005 ABC transporter Avi_7476 PF02653 Avi_7476 Avi_7477 PF02126 Phosphotriesterase family Avi_7478 PF07090 Protein of unknown function (DUF1355) Avi_7479 PF00294 pfkB family carbohydrate kinase Avi_7481 PF03437 BtpA family Avi_7482 PF01546 Peptidase family M20/M25/M40 Avi_7482 PF07687 Peptidase dimerisation domain Avi_7483 PF00873 AcrB/AcrD/AcrF family Avi_7484 PF16576 Avi_7484 Avi_7487 PF02321 Outer membrane efflux protein Avi_7488 PF00072 Response regulator receiver domain Avi_7488 PF00486 Transcriptional regulatory protein, C terminal Avi_7490 PF00512 His Kinase A (phospho-acceptor) domain Avi_7490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_7497 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_7497 PF03466 LysR substrate binding domain Avi_7500 PF13610 Avi_7500 Avi_7502 PF00892 EamA-like transporter family Avi_7504 PF01266 FAD dependent oxidoreductase Avi_7504 PF13683 Avi_7504 Avi_7505 PF05899 Protein of unknown function (DUF861) Avi_7506 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7507 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7508 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_7509 PF00005 ABC transporter Avi_7510 PF00202 Aminotransferase class-III Avi_7513 PF01037 AsnC family Avi_7513 PF13404 AsnC-type helix-turn-helix domain Avi_7514 PF13610 Avi_7514 Avi_7515 PF13714 Phosphoenolpyruvate phosphomutase Avi_7516 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7517 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7518 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7520 PF00005 ABC transporter Avi_7520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7522 PF00005 ABC transporter Avi_7522 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7524 PF00155 Aminotransferase class I and II Avi_7526 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_7526 PF03466 LysR substrate binding domain Avi_7527 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Avi_7528 PF02441 Flavoprotein Avi_7529 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7530 PF13714 Phosphoenolpyruvate phosphomutase Avi_7531 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7532 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7533 PF00005 ABC transporter Avi_7533 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7536 PF00005 ABC transporter Avi_7536 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_7537 PF09523 Avi_7537 Avi_7538 PF01979 Amidohydrolase family Avi_7539 PF01546 Peptidase family M20/M25/M40 Avi_7539 PF07687 Peptidase dimerisation domain Avi_7540 PF00221 Aromatic amino acid lyase Avi_7544 PF05762 VWA domain containing CoxE-like protein Avi_7546 PF05406 WGR domain Avi_7546 PF13569 Avi_7546 Avi_7549 PF07728 AAA domain (dynein-related subfamily) Avi_7550 PF00709 Adenylosuccinate synthetase Avi_7554 PF06353 Avi_7554 Avi_7557 PF05954 Phage late control gene D protein (GPD) Avi_7558 PF13606 Ankyrin repeat Avi_7560 PF09937 Avi_7560 Avi_7561 PF13665 Avi_7561 Avi_7563 PF10099 Avi_7563 Avi_7564 PF04542 Sigma-70 region 2 Avi_7564 PF08281 Sigma-70, region 4 Avi_7565 PF14339 Avi_7565 Avi_7566 PF00665 Integrase core domain Avi_7569 PF00480 ROK family Avi_7570 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Avi_7570 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Avi_7571 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Avi_7571 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Avi_7572 PF00723 Glycosyl hydrolases family 15 Avi_7572 PF09137 Glucodextranase, domain N Avi_7573 PF00155 Aminotransferase class I and II Avi_7573 PF00392 Bacterial regulatory proteins, gntR family Avi_7576 PF00795 Carbon-nitrogen hydrolase Avi_7577 PF04055 Radical SAM superfamily Avi_7578 PF00583 Acetyltransferase (GNAT) family Avi_7579 PF00586 AIR synthase related protein, N-terminal domain Avi_7579 PF02769 AIR synthase related protein, C-terminal domain Avi_7580 PF00534 Glycosyl transferases group 1 Avi_7580 PF13439 Glycosyltransferase Family 4 Avi_7583 PF13738 Pyridine nucleotide-disulphide oxidoreductase Avi_7585 PF00199 Catalase Avi_7586 PF00384 Molybdopterin oxidoreductase Avi_7586 PF01568 Molydopterin dinucleotide binding domain Avi_7587 PF00583 Acetyltransferase (GNAT) family Avi_7588 PF02811 PHP domain Avi_7589 PF00149 Calcineurin-like phosphoesterase Avi_7590 PF13416 Bacterial extracellular solute-binding protein Avi_7591 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7592 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7593 PF00005 ABC transporter Avi_7593 PF08402 TOBE domain Avi_7595 PF00440 Bacterial regulatory proteins, tetR family Avi_7597 PF00561 alpha/beta hydrolase fold Avi_7599 PF01613 Flavin reductase like domain Avi_7600 PF00557 Metallopeptidase family M24 Avi_7601 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7602 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7603 PF13416 Bacterial extracellular solute-binding protein Avi_7604 PF00005 ABC transporter Avi_7604 PF08402 TOBE domain Avi_7606 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_7608 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7610 PF01261 Xylose isomerase-like TIM barrel Avi_7611 PF00392 Bacterial regulatory proteins, gntR family Avi_7611 PF07729 FCD domain Avi_7612 PF01402 Ribbon-helix-helix protein, copG family Avi_7612 PF08753 NikR C terminal nickel binding domain Avi_7613 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_7614 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7616 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7616 PF12911 Avi_7616 Avi_7617 PF00005 ABC transporter Avi_7618 PF00005 ABC transporter Avi_7621 PF13545 Crp-like helix-turn-helix domain Avi_7622 PF01497 Periplasmic binding protein Avi_7623 PF01032 FecCD transport family Avi_7625 PF00005 ABC transporter Avi_7626 PF04314 Protein of unknown function (DUF461) Avi_7627 PF02630 SCO1/SenC Avi_7628 PF01965 DJ-1/PfpI family Avi_7629 PF04055 Radical SAM superfamily Avi_7629 PF06463 Molybdenum Cofactor Synthesis C Avi_7629 PF13353 4Fe-4S single cluster domain Avi_7630 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_7631 PF00037 4Fe-4S binding domain Avi_7633 PF00384 Molybdopterin oxidoreductase Avi_7633 PF01568 Molydopterin dinucleotide binding domain Avi_7633 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Avi_7634 PF12833 Helix-turn-helix domain Avi_7635 PF12833 Helix-turn-helix domain Avi_7635 PF14525 Avi_7635 Avi_7637 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Avi_7637 PF02770 Acyl-CoA dehydrogenase, middle domain Avi_7637 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Avi_7641 PF00563 EAL domain Avi_7641 PF00990 GGDEF domain Avi_7643 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_7643 PF08447 PAS fold Avi_7643 PF08448 PAS fold Avi_7648 PF00158 Sigma-54 interaction domain Avi_7648 PF01590 GAF domain Avi_7648 PF02954 Bacterial regulatory protein, Fis family Avi_7649 PF00107 Zinc-binding dehydrogenase Avi_7649 PF08240 Alcohol dehydrogenase GroES-like domain Avi_7650 PF00743 Flavin-binding monooxygenase-like Avi_7652 PF03737 Demethylmenaquinone methyltransferase Avi_7653 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_7653 PF03466 LysR substrate binding domain Avi_7654 PF00364 Biotin-requiring enzyme Avi_7655 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Avi_7655 PF02785 Biotin carboxylase C-terminal domain Avi_7655 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_7656 PF00364 Biotin-requiring enzyme Avi_7657 PF02682 Allophanate hydrolase subunit 1 Avi_7658 PF02626 Allophanate hydrolase subunit 2 Avi_7659 PF03746 LamB/YcsF family Avi_7660 PF00155 Aminotransferase class I and II Avi_7661 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_7661 PF03466 LysR substrate binding domain Avi_7662 PF00106 short chain dehydrogenase Avi_7663 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7664 PF00528 Binding-protein-dependent transport system inner membrane component Avi_7665 PF00005 ABC transporter Avi_7667 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_7669 PF13340 Avi_7669 Avi_7671 PF13586 Avi_7671 Avi_7674 PF01565 FAD binding domain Avi_7675 PF02754 Avi_7675 Avi_7675 PF13183 4Fe-4S dicluster domain Avi_7676 PF01565 FAD binding domain Avi_7676 PF02913 FAD linked oxidases, C-terminal domain Avi_7677 PF12802 MarR family Avi_7679 PF07690 Major Facilitator Superfamily Avi_7680 PF04966 Carbohydrate-selective porin, OprB family Avi_7681 PF12802 MarR family Avi_7682 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_7682 PF14759 Reductase C-terminal Avi_7683 PF00067 Cytochrome P450 Avi_7685 PF13737 Avi_7685 Avi_7686 PF00171 Aldehyde dehydrogenase family Avi_7687 PF00501 AMP-binding enzyme Avi_7687 PF13193 AMP-binding enzyme C-terminal domain Avi_7688 PF12625 Avi_7688 Avi_7688 PF12833 Helix-turn-helix domain Avi_7689 PF01039 Carboxyl transferase domain Avi_7690 PF00378 Enoyl-CoA hydratase/isomerase family Avi_7691 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Avi_7691 PF00364 Biotin-requiring enzyme Avi_7691 PF02785 Biotin carboxylase C-terminal domain Avi_7691 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Avi_7692 PF00682 HMGL-like Avi_7693 PF07883 Cupin domain Avi_7693 PF13411 MerR HTH family regulatory protein Avi_7693 PF13560 Helix-turn-helix domain Avi_7694 PF00202 Aminotransferase class-III Avi_7698 PF01548 Avi_7698 Avi_7698 PF02371 Avi_7698 Avi_7700 PF00665 Integrase core domain Avi_7700 PF01527 Transposase Avi_7700 PF13276 Avi_7700 Avi_8000 PF13614 AAA domain Avi_8001 PF02195 ParB-like nuclease domain Avi_8001 PF07506 Avi_8001 Avi_8002 PF03428 Avi_8002 Avi_8002 PF11800 Avi_8002 Avi_8006 PF00589 Phage integrase family Avi_8008 PF04079 Putative transcriptional regulators (Ypuh-like) Avi_8011 PF01548 Avi_8011 Avi_8011 PF02371 Avi_8011 Avi_8012 PF13610 Avi_8012 Avi_8015 PF02735 Ku70/Ku80 beta-barrel domain Avi_8016 PF02735 Ku70/Ku80 beta-barrel domain Avi_8017 PF01068 ATP dependent DNA ligase domain Avi_8017 PF04679 ATP dependent DNA ligase C terminal region Avi_8017 PF13298 DNA polymerase Ligase (LigD) Avi_8018 PF13358 DDE superfamily endonuclease Avi_8019 PF00296 Luciferase-like monooxygenase Avi_8020 PF00128 Alpha amylase, catalytic domain Avi_8025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_8025 PF08447 PAS fold Avi_8027 PF00216 Bacterial DNA-binding protein Avi_8029 PF01022 Bacterial regulatory protein, arsR family Avi_8032 PF13558 Putative exonuclease SbcCD, C subunit Avi_8035 PF01526 Avi_8035 Avi_8044 PF13610 Avi_8044 Avi_8048 PF06412 Avi_8048 Avi_8049 PF07820 Avi_8049 Avi_8059 PF01527 Transposase Avi_8066 PF00990 GGDEF domain Avi_8066 PF13188 PAS domain Avi_8067 PF01381 Helix-turn-helix Avi_8068 PF00563 EAL domain Avi_8068 PF00990 GGDEF domain Avi_8070 PF13610 Avi_8070 Avi_8073 PF10091 Putative glucoamylase Avi_8074 PF13744 Helix-turn-helix domain Avi_8075 PF05973 Avi_8075 Avi_8077 PF13154 Avi_8077 Avi_8077 PF13155 Toprim-like Avi_8078 PF07215 Avi_8078 Avi_8080 PF13358 DDE superfamily endonuclease Avi_8083 PF04851 Type III restriction enzyme, res subunit Avi_8089 PF13714 Phosphoenolpyruvate phosphomutase Avi_8099 PF08401 Avi_8099 Avi_8104 PF13358 DDE superfamily endonuclease Avi_8105 PF01548 Avi_8105 Avi_8105 PF02371 Avi_8105 Avi_8111 PF05284 Avi_8111 Avi_8114 PF00589 Phage integrase family Avi_8115 PF00589 Phage integrase family Avi_8116 PF00589 Phage integrase family Avi_8116 PF02899 Phage integrase, N-terminal SAM-like domain Avi_8119 PF05284 Avi_8119 Avi_8120 PF05284 Avi_8120 Avi_8121 PF05284 Avi_8121 Avi_8123 PF00216 Bacterial DNA-binding protein Avi_8126 PF05406 WGR domain Avi_8127 PF00565 Staphylococcal nuclease homologue Avi_8128 PF02534 Type IV secretory system Conjugative DNA transfer Avi_8129 PF06412 Avi_8129 Avi_8130 PF07820 Avi_8130 Avi_8131 PF03389 MobA/MobL family Avi_8131 PF13604 AAA domain Avi_8132 PF10502 Signal peptidase, peptidase S26 Avi_8135 PF06871 Avi_8135 Avi_8137 PF04352 ProQ/FINO family Avi_8138 PF09228 Prokaryotic Transcriptional repressor TraM Avi_8140 PF00196 Bacterial regulatory proteins, luxR family Avi_8140 PF03472 Autoinducer binding domain Avi_8142 PF00842 Alanine racemase, C-terminal domain Avi_8142 PF01168 Alanine racemase, N-terminal domain Avi_8143 PF01037 AsnC family Avi_8143 PF13412 Winged helix-turn-helix DNA-binding Avi_8145 PF01614 Bacterial transcriptional regulator Avi_8145 PF09339 IclR helix-turn-helix domain Avi_8146 PF13416 Bacterial extracellular solute-binding protein Avi_8147 PF00005 ABC transporter Avi_8147 PF08402 TOBE domain Avi_8148 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8149 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8150 PF00202 Aminotransferase class-III Avi_8152 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8156 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8157 PF13416 Bacterial extracellular solute-binding protein Avi_8158 PF00005 ABC transporter Avi_8158 PF08402 TOBE domain Avi_8160 PF00171 Aldehyde dehydrogenase family Avi_8162 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_8163 PF09339 IclR helix-turn-helix domain Avi_8165 PF01266 FAD dependent oxidoreductase Avi_8166 PF05013 N-formylglutamate amidohydrolase Avi_8168 PF03972 MmgE/PrpD family Avi_8169 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8171 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8172 PF00005 ABC transporter Avi_8172 PF08402 TOBE domain Avi_8173 PF13416 Bacterial extracellular solute-binding protein Avi_8174 PF02538 Avi_8174 Avi_8176 PF01968 Hydantoinase/oxoprolinase Avi_8176 PF05378 Avi_8176 Avi_8178 PF01614 Bacterial transcriptional regulator Avi_8178 PF09339 IclR helix-turn-helix domain Avi_8180 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8181 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8181 PF12911 Avi_8181 Avi_8183 PF00005 ABC transporter Avi_8183 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_8184 PF03972 MmgE/PrpD family Avi_8187 PF00107 Zinc-binding dehydrogenase Avi_8187 PF08240 Alcohol dehydrogenase GroES-like domain Avi_8188 PF00171 Aldehyde dehydrogenase family Avi_8194 PF02027 RolB/RolC glucosidase family Avi_8195 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Avi_8195 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Avi_8198 PF13614 AAA domain Avi_8200 PF02195 ParB-like nuclease domain Avi_8201 PF03428 Avi_8201 Avi_8201 PF11800 Avi_8201 Avi_8202 PF13358 DDE superfamily endonuclease Avi_8202 PF13551 Winged helix-turn helix Avi_8208 PF04730 Avi_8208 Avi_8210 PF02534 Type IV secretory system Conjugative DNA transfer Avi_8212 PF03432 Avi_8212 Avi_8213 PF07328 Avi_8213 Avi_8214 PF07015 VirC1 protein Avi_8215 PF07181 VirC2 protein Avi_8217 PF00072 Response regulator receiver domain Avi_8217 PF00486 Transcriptional regulatory protein, C terminal Avi_8218 PF00437 Type II/IV secretion system protein Avi_8219 PF03743 Bacterial conjugation TrbI-like protein Avi_8220 PF03524 Conjugal transfer protein Avi_8221 PF04335 VirB8 protein Avi_8222 PF04610 Avi_8222 Avi_8224 PF03135 Avi_8224 Avi_8225 PF05101 Avi_8225 Avi_8226 PF04956 Avi_8226 Avi_8227 PF01464 Transglycosylase SLT domain Avi_8230 PF05717 Avi_8230 Avi_8231 PF03050 Avi_8231 Avi_8231 PF13005 Avi_8231 Avi_8231 PF13007 Avi_8231 Avi_8231 PF13817 Avi_8231 Avi_8237 PF05717 Avi_8237 Avi_8238 PF01527 Transposase Avi_8242 PF06661 Avi_8242 Avi_8243 PF07229 VirE2 Avi_8244 PF12189 Single-strand DNA-binding protein Avi_8248 PF05717 Avi_8248 Avi_8249 PF03050 Avi_8249 Avi_8249 PF13005 Avi_8249 Avi_8249 PF13007 Avi_8249 Avi_8249 PF13817 Avi_8249 Avi_8250 PF00512 His Kinase A (phospho-acceptor) domain Avi_8250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_8251 PF00067 Cytochrome P450 Avi_8253 PF00589 Phage integrase family Avi_8254 PF02371 Avi_8254 Avi_8255 PF00665 Integrase core domain Avi_8256 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Avi_8256 PF08388 Avi_8256 Avi_8257 PF00589 Phage integrase family Avi_8258 PF13358 DDE superfamily endonuclease Avi_8259 PF00589 Phage integrase family Avi_8259 PF02899 Phage integrase, N-terminal SAM-like domain Avi_8260 PF00589 Phage integrase family Avi_8262 PF00589 Phage integrase family Avi_8262 PF13495 Phage integrase, N-terminal SAM-like domain Avi_8264 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Avi_8266 PF01527 Transposase Avi_8269 PF02027 RolB/RolC glucosidase family Avi_8271 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Avi_8273 PF01548 Avi_8273 Avi_8278 PF13419 Haloacid dehalogenase-like hydrolase Avi_8279 PF14706 Transposase DNA-binding Avi_8280 PF01527 Transposase Avi_8282 PF00872 Avi_8282 Avi_8287 PF01425 Amidase Avi_8288 PF01593 Flavin containing amine oxidoreductase Avi_8288 PF02027 RolB/RolC glucosidase family Avi_8291 PF13358 DDE superfamily endonuclease Avi_8294 PF01745 Isopentenyl transferase Avi_8300 PF00196 Bacterial regulatory proteins, luxR family Avi_8300 PF03472 Autoinducer binding domain Avi_8301 PF04324 BFD-like [2Fe-2S] binding domain Avi_8301 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_8303 PF01266 FAD dependent oxidoreductase Avi_8304 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8305 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8306 PF00005 ABC transporter Avi_8306 PF08402 TOBE domain Avi_8307 PF13416 Bacterial extracellular solute-binding protein Avi_8309 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_8309 PF03466 LysR substrate binding domain Avi_8310 PF00005 ABC transporter Avi_8310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_8311 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8312 PF00528 Binding-protein-dependent transport system inner membrane component Avi_8313 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_8314 PF13510 2Fe-2S iron-sulfur cluster binding domain Avi_8316 PF04324 BFD-like [2Fe-2S] binding domain Avi_8316 PF07992 Pyridine nucleotide-disulphide oxidoreductase Avi_8317 PF01042 Endoribonuclease L-PSP Avi_8319 PF02538 Avi_8319 Avi_8320 PF01968 Hydantoinase/oxoprolinase Avi_8320 PF05378 Avi_8320 Avi_8321 PF01266 FAD dependent oxidoreductase Avi_8322 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_8322 PF03466 LysR substrate binding domain Avi_8323 PF03743 Bacterial conjugation TrbI-like protein Avi_8325 PF03524 Conjugal transfer protein Avi_8326 PF04335 VirB8 protein Avi_8328 PF04610 Avi_8328 Avi_8329 PF10907 Avi_8329 Avi_8331 PF03135 Avi_8331 Avi_8332 PF05101 Avi_8332 Avi_8333 PF04956 Avi_8333 Avi_8334 PF00437 Type II/IV secretion system protein Avi_8335 PF00765 Autoinducer synthetase Avi_8336 PF17413 Avi_8336 Avi_9001 PF13411 MerR HTH family regulatory protein Avi_9001 PF13614 AAA domain Avi_9002 PF02195 ParB-like nuclease domain Avi_9002 PF07506 Avi_9002 Avi_9003 PF03428 Avi_9003 Avi_9003 PF11800 Avi_9003 Avi_9004 PF00239 Resolvase, N terminal domain Avi_9007 PF00989 PAS fold Avi_9007 PF07536 Avi_9007 Avi_9008 PF00589 Phage integrase family Avi_9009 PF07183 Avi_9009 Avi_9010 PF04079 Putative transcriptional regulators (Ypuh-like) Avi_9013 PF11272 Avi_9013 Avi_9014 PF01904 Protein of unknown function DUF72 Avi_9019 PF01527 Transposase Avi_9020 PF00589 Phage integrase family Avi_9020 PF13495 Phage integrase, N-terminal SAM-like domain Avi_9026 PF07568 Avi_9026 Avi_9028 PF00072 Response regulator receiver domain Avi_9030 PF00857 Isochorismatase family Avi_9035 PF01609 Transposase DDE domain Avi_9036 PF13340 Avi_9036 Avi_9037 PF02690 Avi_9037 Avi_9038 PF00293 NUDIX domain Avi_9039 PF13610 Avi_9039 Avi_9041 PF08447 PAS fold Avi_9041 PF08448 PAS fold Avi_9041 PF13188 PAS domain Avi_9042 PF13610 Avi_9042 Avi_9043 PF05974 Domain of unknown function (DUF892) Avi_9047 PF00072 Response regulator receiver domain Avi_9049 PF12802 MarR family Avi_9052 PF10503 Esterase PHB depolymerase Avi_9053 PF01841 Transglutaminase-like superfamily Avi_9054 PF07804 HipA-like C-terminal domain Avi_9054 PF13657 HipA N-terminal domain Avi_9055 PF13560 Helix-turn-helix domain Avi_9057 PF01904 Protein of unknown function DUF72 Avi_9059 PF11272 Avi_9059 Avi_9065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_9065 PF12729 Avi_9065 Avi_9066 PF13340 Avi_9066 Avi_9067 PF13586 Avi_9067 Avi_9068 PF12833 Helix-turn-helix domain Avi_9068 PF14525 Avi_9068 Avi_9071 PF13586 Avi_9071 Avi_9072 PF13340 Avi_9072 Avi_9075 PF01547 Bacterial extracellular solute-binding protein Avi_9076 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_9076 PF12729 Avi_9076 Avi_9077 PF08447 PAS fold Avi_9077 PF13426 PAS domain Avi_9079 PF01527 Transposase Avi_9083 PF00072 Response regulator receiver domain Avi_9083 PF00360 Phytochrome region Avi_9083 PF01590 GAF domain Avi_9083 PF07536 Avi_9083 Avi_9083 PF08446 PAS fold Avi_9084 PF12833 Helix-turn-helix domain Avi_9088 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Avi_9088 PF00672 HAMP domain Avi_9088 PF14827 Sensory domain of two-component sensor kinase Avi_9096 PF05717 Avi_9096 Avi_9097 PF01527 Transposase Avi_9098 PF00072 Response regulator receiver domain Avi_9098 PF00512 His Kinase A (phospho-acceptor) domain Avi_9098 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_9099 PF01339 CheB methylesterase Avi_9100 PF01739 CheR methyltransferase, SAM binding domain Avi_9100 PF03705 CheR methyltransferase, all-alpha domain Avi_9103 PF00072 Response regulator receiver domain Avi_9103 PF00512 His Kinase A (phospho-acceptor) domain Avi_9103 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_9103 PF05227 CHASE3 domain Avi_9103 PF13185 GAF domain Avi_9104 PF09557 Avi_9104 Avi_9106 PF04255 Protein of unknown function (DUF433) Avi_9108 PF01850 PIN domain Avi_9114 PF13586 Avi_9114 Avi_9115 PF13340 Avi_9115 Avi_9116 PF00899 ThiF family Avi_9118 PF00224 Pyruvate kinase, barrel domain Avi_9118 PF02887 Pyruvate kinase, alpha/beta domain Avi_9119 PF05161 MOFRL family Avi_9119 PF13660 Domain of unknown function (DUF4147) Avi_9120 PF00180 Isocitrate/isopropylmalate dehydrogenase Avi_9121 PF07690 Major Facilitator Superfamily Avi_9122 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_9122 PF03466 LysR substrate binding domain Avi_9123 PF01202 Shikimate kinase Avi_9124 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_9125 PF00005 ABC transporter Avi_9126 PF02653 Avi_9126 Avi_9127 PF13407 Periplasmic binding protein domain Avi_9128 PF01968 Hydantoinase/oxoprolinase Avi_9128 PF05378 Avi_9128 Avi_9129 PF02538 Avi_9129 Avi_9130 PF00202 Aminotransferase class-III Avi_9131 PF00356 Bacterial regulatory proteins, lacI family Avi_9131 PF13377 Periplasmic binding protein-like domain Avi_9134 PF01548 Avi_9134 Avi_9134 PF02371 Avi_9134 Avi_9135 PF13610 Avi_9135 Avi_9140 PF00005 ABC transporter Avi_9140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_9142 PF00005 ABC transporter Avi_9142 PF00528 Binding-protein-dependent transport system inner membrane component Avi_9142 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Avi_9143 PF00528 Binding-protein-dependent transport system inner membrane component Avi_9144 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Avi_9145 PF00392 Bacterial regulatory proteins, gntR family Avi_9145 PF07702 UTRA domain Avi_9146 PF01380 SIS domain Avi_9147 PF00294 pfkB family carbohydrate kinase Avi_9148 PF01968 Hydantoinase/oxoprolinase Avi_9148 PF05378 Avi_9148 Avi_9149 PF02538 Avi_9149 Avi_9150 PF01958 Domain of unknown function DUF108 Avi_9150 PF03447 Homoserine dehydrogenase, NAD binding domain Avi_9151 PF00291 Pyridoxal-phosphate dependent enzyme Avi_9152 PF00155 Aminotransferase class I and II Avi_9153 PF01933 Uncharacterised protein family UPF0052 Avi_9154 PF01933 Uncharacterised protein family UPF0052 Avi_9155 PF14579 Helix-hairpin-helix motif Avi_9158 PF13154 Avi_9158 Avi_9158 PF13155 Toprim-like Avi_9160 PF07215 Avi_9160 Avi_9161 PF11284 Avi_9161 Avi_9162 PF00176 SNF2 family N-terminal domain Avi_9165 PF02195 ParB-like nuclease domain Avi_9173 PF08401 Avi_9173 Avi_9175 PF05284 Avi_9175 Avi_9178 PF00216 Bacterial DNA-binding protein Avi_9182 PF05406 WGR domain Avi_9184 PF00565 Staphylococcal nuclease homologue Avi_9186 PF02534 Type IV secretory system Conjugative DNA transfer Avi_9187 PF06412 Avi_9187 Avi_9188 PF07820 Avi_9188 Avi_9189 PF03389 MobA/MobL family Avi_9189 PF13538 UvrD-like helicase C-terminal domain Avi_9189 PF13604 AAA domain Avi_9191 PF10502 Signal peptidase, peptidase S26 Avi_9192 PF00795 Carbon-nitrogen hydrolase Avi_9193 PF06871 Avi_9193 Avi_9194 PF09228 Prokaryotic Transcriptional repressor TraM Avi_9195 PF00196 Bacterial regulatory proteins, luxR family Avi_9195 PF03472 Autoinducer binding domain Avi_9196 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) Avi_9197 PF00005 ABC transporter Avi_9197 PF08402 TOBE domain Avi_9198 PF00528 Binding-protein-dependent transport system inner membrane component Avi_9199 PF00528 Binding-protein-dependent transport system inner membrane component Avi_9200 PF13416 Bacterial extracellular solute-binding protein Avi_9201 PF00392 Bacterial regulatory proteins, gntR family Avi_9206 PF13561 Enoyl-(Acyl carrier protein) reductase Avi_9208 PF01370 NAD dependent epimerase/dehydratase family Avi_9211 PF01548 Avi_9211 Avi_9211 PF02371 Avi_9211 Avi_9214 PF01548 Avi_9214 Avi_9216 PF16576 Avi_9216 Avi_9217 PF00005 ABC transporter Avi_9217 PF12698 ABC-2 family transporter protein Avi_9218 PF12698 ABC-2 family transporter protein Avi_9219 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Avi_9219 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Avi_9220 PF12769 Domain of unknown function (DUF3814) Avi_9221 PF02233 NAD(P) transhydrogenase beta subunit Avi_9222 PF00171 Aldehyde dehydrogenase family Avi_9223 PF00107 Zinc-binding dehydrogenase Avi_9223 PF08240 Alcohol dehydrogenase GroES-like domain Avi_9227 PF01047 MarR family Avi_9228 PF01494 FAD binding domain Avi_9229 PF00440 Bacterial regulatory proteins, tetR family Avi_9230 PF00561 alpha/beta hydrolase fold Avi_9231 PF02909 Tetracyclin repressor, C-terminal all-alpha domain Avi_9233 PF01494 FAD binding domain Avi_9237 PF00005 ABC transporter Avi_9239 PF00528 Binding-protein-dependent transport system inner membrane component Avi_9240 PF00528 Binding-protein-dependent transport system inner membrane component Avi_9241 PF00497 Bacterial extracellular solute-binding proteins, family 3 Avi_9243 PF01266 FAD dependent oxidoreductase Avi_9244 PF00392 Bacterial regulatory proteins, gntR family Avi_9244 PF07729 FCD domain Avi_9247 PF01012 Electron transfer flavoprotein domain Avi_9248 PF00766 Electron transfer flavoprotein FAD-binding domain Avi_9248 PF01012 Electron transfer flavoprotein domain Avi_9249 PF03807 NADP oxidoreductase coenzyme F420-dependent Avi_9249 PF14748 Pyrroline-5-carboxylate reductase dimerisation Avi_9252 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase Avi_9253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Avi_9253 PF03466 LysR substrate binding domain Avi_9257 PF03743 Bacterial conjugation TrbI-like protein Avi_9258 PF07283 Avi_9258 Avi_9259 PF03524 Conjugal transfer protein Avi_9260 PF04335 VirB8 protein Avi_9261 PF04610 Avi_9261 Avi_9262 PF10907 Avi_9262 Avi_9263 PF10907 Avi_9263 Avi_9265 PF03135 Avi_9265 Avi_9267 PF05101 Avi_9267 Avi_9268 PF04956 Avi_9268 Avi_9269 PF00437 Type II/IV secretion system protein Avi_9270 PF00765 Autoinducer synthetase Avi_9501 PF13614 AAA domain Avi_9502 PF02195 ParB-like nuclease domain Avi_9502 PF07506 Avi_9502 Avi_9503 PF03428 Avi_9503 Avi_9503 PF11800 Avi_9503 Avi_9504 PF12697 Alpha/beta hydrolase family Avi_9505 PF00990 GGDEF domain Avi_9507 PF08808 Avi_9507 Avi_9510 PF00589 Phage integrase family Avi_9511 PF01850 PIN domain Avi_9513 PF07756 Avi_9513 Avi_9513 PF11972 Avi_9513 Avi_9516 PF00318 Ribosomal protein S2 Avi_9525 PF13289 Avi_9525 Avi_9526 PF03235 Avi_9526 Avi_9531 PF13086 AAA domain Avi_9531 PF13087 AAA domain Avi_9532 PF00905 Penicillin binding protein transpeptidase domain Avi_9532 PF03717 Penicillin-binding Protein dimerisation domain Avi_9533 PF01381 Helix-turn-helix Avi_9535 PF01381 Helix-turn-helix Avi_9537 PF13154 Avi_9537 Avi_9537 PF13155 Toprim-like Avi_9538 PF07215 Avi_9538 Avi_9539 PF11284 Avi_9539 Avi_9541 PF00176 SNF2 family N-terminal domain Avi_9546 PF00313 'Cold-shock' DNA-binding domain Avi_9549 PF08808 Avi_9549 Avi_9550 PF09722 Avi_9550 Avi_9553 PF02195 ParB-like nuclease domain Avi_9559 PF04352 ProQ/FINO family Avi_9564 PF08401 Avi_9564 Avi_9570 PF12686 Avi_9570 Avi_9572 PF05284 Avi_9572 Avi_9580 PF05284 Avi_9580 Avi_9587 PF05406 WGR domain Avi_9589 PF02534 Type IV secretory system Conjugative DNA transfer Avi_9590 PF06412 Avi_9590 Avi_9593 PF07820 Avi_9593 Avi_9595 PF01443 Viral (Superfamily 1) RNA helicase Avi_9595 PF03389 MobA/MobL family Avi_9595 PF13604 AAA domain Avi_9596 PF10502 Signal peptidase, peptidase S26 Avi_9597 PF00795 Carbon-nitrogen hydrolase Avi_9599 PF06871 Avi_9599 Avi_9606 PF03567 Sulfotransferase family Avi_9607 PF00155 Aminotransferase class I and II Avi_9608 PF00682 HMGL-like Avi_9609 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Avi_9609 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Avi_9610 PF00005 ABC transporter Avi_9610 PF00664 ABC transporter transmembrane region Avi_9611 PF03567 Sulfotransferase family Avi_9612 PF00392 Bacterial regulatory proteins, gntR family Avi_9615 PF01710 Transposase Avi_9616 PF01695 IstB-like ATP binding protein Avi_9617 PF13551 Winged helix-turn helix Avi_9620 PF01527 Transposase Avi_9622 PF05717 Avi_9622 Avi_9623 PF03050 Avi_9623 Avi_9623 PF13005 Avi_9623 Avi_9623 PF13007 Avi_9623 Avi_9623 PF13817 Avi_9623 Avi_9626 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Avi_9629 PF00009 Elongation factor Tu GTP binding domain Avi_9629 PF01583 Adenylylsulphate kinase Avi_9630 PF01507 Phosphoadenosine phosphosulfate reductase family Avi_9632 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Avi_9634 PF00694 Aconitase C-terminal domain Avi_9636 PF00330 Aconitase family (aconitate hydratase) Avi_9638 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Avi_9641 PF00501 AMP-binding enzyme Avi_9641 PF00550 Phosphopantetheine attachment site Avi_9641 PF00551 Formyl transferase Avi_9641 PF00668 Condensation domain Avi_9641 PF08242 Methyltransferase domain Avi_9641 PF13193 AMP-binding enzyme C-terminal domain Avi_9643 PF00501 AMP-binding enzyme Avi_9643 PF00550 Phosphopantetheine attachment site Avi_9643 PF00668 Condensation domain Avi_9643 PF13193 AMP-binding enzyme C-terminal domain Avi_9644 PF01648 4'-phosphopantetheinyl transferase superfamily Avi_9645 PF13560 Helix-turn-helix domain Avi_9647 PF03743 Bacterial conjugation TrbI-like protein Avi_9650 PF03524 Conjugal transfer protein Avi_9651 PF04335 VirB8 protein Avi_9653 PF04610 Avi_9653 Avi_9656 PF03135 Avi_9656 Avi_9658 PF05101 Avi_9658 Avi_9659 PF04956 Avi_9659 Avi_9661 PF00437 Type II/IV secretion system protein Avi_9665 PF00196 Bacterial regulatory proteins, luxR family Avi_9665 PF03472 Autoinducer binding domain Avi_9666 PF00765 Autoinducer synthetase Avi_9800 PF13614 AAA domain Avi_9801 PF02195 ParB-like nuclease domain Avi_9801 PF07506 Avi_9801 Avi_9802 PF03428 Avi_9802 Avi_9802 PF11800 Avi_9802 Avi_9804 PF13560 Helix-turn-helix domain Avi_9806 PF07015 VirC1 protein Avi_9807 PF05713 Avi_9807 Avi_9810 PF02534 Type IV secretory system Conjugative DNA transfer Avi_9811 PF00437 Type II/IV secretion system protein Avi_9812 PF03743 Bacterial conjugation TrbI-like protein Avi_9813 PF03524 Conjugal transfer protein Avi_9815 PF04335 VirB8 protein Avi_9816 PF04610 Avi_9816 Avi_9818 PF07996 Type IV secretion system proteins Avi_9819 PF01464 Transglycosylase SLT domain Avi_9821 PF03135 Avi_9821 Avi_9822 PF04956 Avi_9822 Avi_9824 PF01464 Transglycosylase SLT domain Avi_9827 PF00565 Staphylococcal nuclease homologue Avi_9833 PF00239 Resolvase, N terminal domain Avi_9835 PF00665 Integrase core domain Avi_9836 PF01695 IstB-like ATP binding protein Avi_9836 PF08483 Avi_9836 Avi_9837 PF01527 Transposase Avi_9838 PF00665 Integrase core domain Avi_9838 PF13276 Avi_9838 Avi_9841 PF00211 Adenylate and Guanylate cyclase catalytic domain Avi_9842 PF11604 Copper binding periplasmic protein CusF Avi_9844 PF00127 Copper binding proteins, plastocyanin/azurin family Avi_9846 PF00072 Response regulator receiver domain Avi_9846 PF00486 Transcriptional regulatory protein, C terminal Avi_9847 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Avi_9848 PF11604 Copper binding periplasmic protein CusF Avi_9849 PF00127 Copper binding proteins, plastocyanin/azurin family Avi_9850 PF07731 Multicopper oxidase Avi_9850 PF07732 Multicopper oxidase Avi_9851 PF02321 Outer membrane efflux protein Avi_9856 PF03713 Domain of unknown function (DUF305) Avi_9859 PF00122 E1-E2 ATPase Avi_9859 PF00702 haloacid dehalogenase-like hydrolase Avi_9862 PF01322 Cytochrome C' Avi_9863 PF00376 MerR family regulatory protein Avi_9863 PF09278 MerR, DNA binding Avi_9864 PF00122 E1-E2 ATPase Avi_9864 PF00403 Heavy-metal-associated domain Avi_9864 PF00702 haloacid dehalogenase-like hydrolase Avi_9865 PF00403 Heavy-metal-associated domain Avi_9867 PF13115 Avi_9867 Avi_9868 PF16576 Avi_9868 Avi_9869 PF00873 AcrB/AcrD/AcrF family Avi_9870 PF04214 Avi_9870 Avi_9871 PF04471 Restriction endonuclease Avi_9872 PF13560 Helix-turn-helix domain Avi_9874 PF12957 Avi_9874 Avi_9881 PF07704 Avi_9881 Avi_9882 PF01850 PIN domain Avi_9896 PF02195 ParB-like nuclease domain Avi_9898 PF00665 Integrase core domain Avi_9898 PF13276 Avi_9898 Avi_9899 PF01527 Transposase Avi_9901 PF03428 Avi_9901 Avi_9901 PF11800 Avi_9901 Avi_9903 PF00565 Staphylococcal nuclease homologue Avi_9904 PF05284 Avi_9904 Avi_9907 PF02661 Fic/DOC family Avi_9909 PF08401 Avi_9909 Avi_9910 PF14279 Avi_9910 Avi_9911 PF00089 Trypsin Avi_9913 PF02452 PemK-like protein Avi_9914 PF13671 AAA domain Avi_9916 PF13274 Avi_9916