Avi_0006 SM00479 Avi_0006 Avi_0009 SM00978 Avi_0009 Avi_0010 SM00925 MltA specific insert domain Avi_0011 SM00463 Small MutS-related domain Avi_0012 SM00530 Helix-turn-helix XRE-family like proteins Avi_0013 SM00387 Histidine kinase-like ATPases Avi_0013 SM00433 TopoisomeraseII Avi_0031 SM00382 ATPases associated with a variety of cellular activities Avi_0031 SM01086 C-terminal, D2-small domain, of ClpB protein Avi_0044 SM00448 cheY-homologous receiver domain Avi_0044 SM00862 Transcriptional regulatory protein, C terminal Avi_0045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_0045 SM00387 Histidine kinase-like ATPases Avi_0045 SM00388 His Kinase A (phosphoacceptor) domain Avi_0049 SM00996 S-adenosyl-L-homocysteine hydrolase Avi_0049 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Avi_0050 SM00091 PAS domain Avi_0050 SM00387 Histidine kinase-like ATPases Avi_0050 SM00388 His Kinase A (phosphoacceptor) domain Avi_0063 SM00448 cheY-homologous receiver domain Avi_0064 SM00387 Histidine kinase-like ATPases Avi_0064 SM00388 His Kinase A (phosphoacceptor) domain Avi_0067 SM00487 DEAD-like helicases superfamily Avi_0067 SM00490 helicase superfamily c-terminal domain Avi_0067 SM00847 Helicase associated domain (HA2) Add an annotation Avi_0071 SM01130 Avi_0071 Avi_0072 SM00354 helix_turn _helix lactose operon repressor Avi_0092 SM00420 helix_turn_helix, Deoxyribose operon repressor Avi_0092 SM01134 Avi_0092 Avi_0095 SM00382 ATPases associated with a variety of cellular activities Avi_0096 SM00382 ATPases associated with a variety of cellular activities Avi_0110 SM00382 ATPases associated with a variety of cellular activities Avi_0115 SM00530 Helix-turn-helix XRE-family like proteins Avi_0116 SM00864 Tubulin/FtsZ family, GTPase domain Avi_0116 SM00865 Tubulin/FtsZ family, C-terminal domain Avi_0120 SM00474 3'-5' exonuclease Avi_0142 SM00357 Cold shock protein domain Avi_0156 SM00493 Avi_0156 Avi_0166 SM00316 Ribosomal protein S1-like RNA-binding domain Avi_0166 SM00322 K homology RNA-binding domain Avi_0173 SM01387 Avi_0173 Avi_0175 SM00316 Ribosomal protein S1-like RNA-binding domain Avi_0175 SM00322 K homology RNA-binding domain Avi_0180 SM00825 Beta-ketoacyl synthase Avi_0194 SM00316 Ribosomal protein S1-like RNA-binding domain Avi_0202 SM00448 cheY-homologous receiver domain Avi_0202 SM00862 Transcriptional regulatory protein, C terminal Avi_0203 SM00387 Histidine kinase-like ATPases Avi_0209 SM00873 B3/4 domain Avi_0209 SM00874 tRNA synthetase B5 domain Avi_0209 SM00896 Ferredoxin-fold anticodon binding domain Avi_0218 SM00858 Avi_0218 Avi_0235 SM00855 Phosphoglycerate mutase family Avi_0238 SM00382 ATPases associated with a variety of cellular activities Avi_0240 SM00851 MGS-like domain Avi_0247 SM00382 ATPases associated with a variety of cellular activities Avi_0258 SM00382 ATPases associated with a variety of cellular activities Avi_0264 SM01133 Avi_0264 Avi_0265 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Avi_0266 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_0266 SM00866 Avi_0266 Avi_0274 SM00382 ATPases associated with a variety of cellular activities Avi_0275 SM00382 ATPases associated with a variety of cellular activities Avi_0278 SM00382 ATPases associated with a variety of cellular activities Avi_0288 SM00072 Guanylate kinase homologues. Avi_0290 SM00028 Tetratricopeptide repeats Avi_0293 SM00867 YceI-like domain Avi_0295 SM00867 YceI-like domain Avi_0296 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_0299 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Avi_0299 SM00474 3'-5' exonuclease Avi_0299 SM00475 5'-3' exonuclease Avi_0299 SM00479 Avi_0299 Avi_0299 SM00482 DNA polymerase A domain Avi_0300 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_0308 SM00271 DnaJ molecular chaperone homology domain Avi_0311 SM00382 ATPases associated with a variety of cellular activities Avi_0315 SM00287 Bacterial SH3 domain homologues Avi_0317 SM00052 Putative diguanylate phosphodiesterase Avi_0317 SM00267 diguanylate cyclase Avi_0346 SM00710 Parallel beta-helix repeats Avi_0347 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Avi_0351 SM00480 DNA polymerase III beta subunit Avi_0359 SM00382 ATPases associated with a variety of cellular activities Avi_0363 SM00382 ATPases associated with a variety of cellular activities Avi_0384 SM00387 Histidine kinase-like ATPases Avi_0384 SM00448 cheY-homologous receiver domain Avi_0385 SM00448 cheY-homologous receiver domain Avi_0386 SM00387 Histidine kinase-like ATPases Avi_0389 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Avi_0389 SM01232 Avi_0389 Avi_0391 SM00382 ATPases associated with a variety of cellular activities Avi_0391 SM00760 Bacterial dnaA protein helix-turn-helix domain Avi_0394 SM00729 Elongator protein 3, MiaB family, Radical SAM Avi_0405 SM00382 ATPases associated with a variety of cellular activities Avi_0409 SM00411 bacterial (prokaryotic) histone like domain Avi_0414 SM00967 RNA 2'-O ribose methyltransferase substrate binding Avi_0417 SM00387 Histidine kinase-like ATPases Avi_0417 SM00388 His Kinase A (phosphoacceptor) domain Avi_0417 SM00448 cheY-homologous receiver domain Avi_0423 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Avi_0423 SM00534 ATPase domain of DNA mismatch repair MUTS family Avi_0424 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Avi_0430 SM00932 Scaffold protein Nfu/NifU N terminal Avi_0436 SM00563 Phosphate acyltransferases Avi_0437 SM00729 Elongator protein 3, MiaB family, Radical SAM Avi_0441 SM01091 Transporter associated domain Avi_0443 SM00530 Helix-turn-helix XRE-family like proteins Avi_0450 SM00054 EF-hand, calcium binding motif Avi_0452 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_0452 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_0453 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_0453 SM00387 Histidine kinase-like ATPases Avi_0459 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Avi_0485 SM00448 cheY-homologous receiver domain Avi_0485 SM00862 Transcriptional regulatory protein, C terminal Avi_0489 SM00382 ATPases associated with a variety of cellular activities Avi_0496 SM00387 Histidine kinase-like ATPases Avi_0496 SM00388 His Kinase A (phosphoacceptor) domain Avi_0501 SM00382 ATPases associated with a variety of cellular activities Avi_0505 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_0505 SM00866 Avi_0505 Avi_0519 SM00419 helix_turn_helix, cAMP Regulatory protein Avi_0520 SM00448 cheY-homologous receiver domain Avi_0522 SM00387 Histidine kinase-like ATPases Avi_0522 SM00388 His Kinase A (phosphoacceptor) domain Avi_0522 SM00448 cheY-homologous receiver domain Avi_0523 SM00448 cheY-homologous receiver domain Avi_0523 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Avi_0525 SM00267 diguanylate cyclase Avi_0537 SM00642 Alpha-amylase domain Avi_0547 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Avi_0570 SM00382 ATPases associated with a variety of cellular activities Avi_0578 SM00062 Bacterial periplasmic substrate-binding proteins Avi_0584 SM00421 helix_turn_helix, Lux Regulon Avi_0584 SM00448 cheY-homologous receiver domain Avi_0591 SM00028 Tetratricopeptide repeats Avi_0601 SM00671 Sel1-like repeats. Avi_0605 SM00098 Alkaline phosphatase homologues Avi_0607 SM00382 ATPases associated with a variety of cellular activities Avi_0610 SM00091 PAS domain Avi_0610 SM00267 diguanylate cyclase Avi_0614 SM00062 Bacterial periplasmic substrate-binding proteins Avi_0615 SM00487 DEAD-like helicases superfamily Avi_0615 SM00490 helicase superfamily c-terminal domain Avi_0617 SM00220 Serine/Threonine protein kinases, catalytic domain Avi_0620 SM00387 Histidine kinase-like ATPases Avi_0620 SM00388 His Kinase A (phosphoacceptor) domain Avi_0620 SM00448 cheY-homologous receiver domain Avi_0641 SM00226 Low molecular weight phosphatase family Avi_0664 SM00849 Metallo-beta-lactamase superfamily Avi_0684 SM00382 ATPases associated with a variety of cellular activities Avi_0712 SM00382 ATPases associated with a variety of cellular activities Avi_0716 SM00382 ATPases associated with a variety of cellular activities Avi_0731 SM00382 ATPases associated with a variety of cellular activities Avi_0763 SM00862 Transcriptional regulatory protein, C terminal Avi_0783 SM00354 helix_turn _helix lactose operon repressor Avi_0788 SM00642 Alpha-amylase domain Avi_0789 SM00382 ATPases associated with a variety of cellular activities Avi_0793 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_0793 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_0793 SM01358 Avi_0793 Avi_0800 SM01230 Avi_0800 Avi_0806 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_0806 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_0811 SM00382 ATPases associated with a variety of cellular activities Avi_0818 SM00530 Helix-turn-helix XRE-family like proteins Avi_0820 SM00382 ATPases associated with a variety of cellular activities Avi_0827 SM00091 PAS domain Avi_0827 SM00387 Histidine kinase-like ATPases Avi_0827 SM00388 His Kinase A (phosphoacceptor) domain Avi_0849 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_0849 SM00387 Histidine kinase-like ATPases Avi_0849 SM00388 His Kinase A (phosphoacceptor) domain Avi_0850 SM00448 cheY-homologous receiver domain Avi_0850 SM00862 Transcriptional regulatory protein, C terminal Avi_0876 SM00746 metallochaperone-like domain Avi_0891 SM00052 Putative diguanylate phosphodiesterase Avi_0891 SM00267 diguanylate cyclase Avi_0893 SM00091 PAS domain Avi_0893 SM00448 cheY-homologous receiver domain Avi_0895 SM00853 MutL C terminal dimerisation domain Avi_0895 SM01340 Avi_0895 Avi_0910 SM00363 S4 RNA-binding domain Avi_0912 SM00849 Metallo-beta-lactamase superfamily Avi_0918 SM00421 helix_turn_helix, Lux Regulon Avi_0937 SM00729 Elongator protein 3, MiaB family, Radical SAM Avi_0940 SM00852 Probable molybdopterin binding domain Avi_0942 SM00028 Tetratricopeptide repeats Avi_0950 SM00911 HWE histidine kinase Avi_0958 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_0958 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_0958 SM01049 Avi_0958 Avi_0960 SM01209 Avi_0960 Avi_0960 SM01210 Avi_0960 Avi_0962 SM00316 Ribosomal protein S1-like RNA-binding domain Avi_0962 SM00732 Likely ribonuclease with RNase H fold. Avi_0973 SM00382 ATPases associated with a variety of cellular activities Avi_0978 SM00267 diguanylate cyclase Avi_0980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_0980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_0988 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_0988 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_0992 SM00363 S4 RNA-binding domain Avi_0994 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_0994 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_0996 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_0996 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_0997 SM00861 Transketolase, pyrimidine binding domain Avi_1007 SM00382 ATPases associated with a variety of cellular activities Avi_1017 SM00052 Putative diguanylate phosphodiesterase Avi_1017 SM00091 PAS domain Avi_1017 SM00267 diguanylate cyclase Avi_1020 SM00855 Phosphoglycerate mutase family Avi_1023 SM00271 DnaJ molecular chaperone homology domain Avi_1029 SM00422 helix_turn_helix, mercury resistance Avi_1061 SM00886 Stress responsive A/B Barrel Domain Avi_1065 SM00382 ATPases associated with a variety of cellular activities Avi_1071 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Avi_1072 SM00052 Putative diguanylate phosphodiesterase Avi_1072 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Avi_1072 SM00267 diguanylate cyclase Avi_1079 SM00046 Diacylglycerol kinase catalytic domain (presumed) Avi_1081 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_1081 SM00895 Avi_1081 Avi_1092 SM00478 endonuclease III Avi_1092 SM00525 Avi_1092 Avi_1100 SM00287 Bacterial SH3 domain homologues Avi_1114 SM00382 ATPases associated with a variety of cellular activities Avi_1117 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_1117 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_1125 SM00354 helix_turn _helix lactose operon repressor Avi_1127 SM00849 Metallo-beta-lactamase superfamily Avi_1154 SM00052 Putative diguanylate phosphodiesterase Avi_1154 SM00267 diguanylate cyclase Avi_1156 SM00829 Enoylreductase Avi_1159 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_1159 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_1164 SM00420 helix_turn_helix, Deoxyribose operon repressor Avi_1164 SM01134 Avi_1164 Avi_1175 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_1189 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_1193 SM00387 Histidine kinase-like ATPases Avi_1195 SM00448 cheY-homologous receiver domain Avi_1200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_1200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_1201 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_1201 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_1208 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_1208 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_1210 SM00382 ATPases associated with a variety of cellular activities Avi_1218 SM00382 ATPases associated with a variety of cellular activities Avi_1249 SM00267 diguanylate cyclase Avi_1273 SM00100 Cyclic nucleotide-monophosphate binding domain Avi_1273 SM00419 helix_turn_helix, cAMP Regulatory protein Avi_1276 SM00342 helix_turn_helix, arabinose operon control protein Avi_1287 SM00760 Bacterial dnaA protein helix-turn-helix domain Avi_1296 SM00382 ATPases associated with a variety of cellular activities Avi_1297 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Avi_1305 SM00387 Histidine kinase-like ATPases Avi_1305 SM00388 His Kinase A (phosphoacceptor) domain Avi_1320 SM00421 helix_turn_helix, Lux Regulon Avi_1328 SM00422 helix_turn_helix, mercury resistance Avi_1358 SM00448 cheY-homologous receiver domain Avi_1358 SM00862 Transcriptional regulatory protein, C terminal Avi_1359 SM00387 Histidine kinase-like ATPases Avi_1362 SM00028 Tetratricopeptide repeats Avi_1368 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Avi_1370 SM00448 cheY-homologous receiver domain Avi_1370 SM00862 Transcriptional regulatory protein, C terminal Avi_1371 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_1371 SM00387 Histidine kinase-like ATPases Avi_1371 SM00388 His Kinase A (phosphoacceptor) domain Avi_1373 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Avi_1373 SM00387 Histidine kinase-like ATPases Avi_1373 SM00388 His Kinase A (phosphoacceptor) domain Avi_1384 SM00986 Uracil DNA glycosylase superfamily Avi_1384 SM00987 UreE urease accessory protein, C-terminal domain Avi_1398 SM00116 Domain in cystathionine beta-synthase and other proteins. Avi_1398 SM00924 MgtE intracellular N domain Avi_1402 SM00382 ATPases associated with a variety of cellular activities Avi_1406 SM01230 Avi_1406 Avi_1432 SM01130 Avi_1432 Avi_1438 SM00342 helix_turn_helix, arabinose operon control protein Avi_1439 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_1441 SM01409 Avi_1441 Avi_1443 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Avi_1443 SM00954 Region found in RelA / SpoT proteins Avi_1449 SM00358 Double-stranded RNA binding motif Avi_1449 SM00535 Ribonuclease III family Avi_1457 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Avi_1472 SM00382 ATPases associated with a variety of cellular activities Avi_1474 SM00257 Lysin motif Avi_1477 SM00917 LeuA allosteric (dimerisation) domain Avi_1484 SM00670 Large family of predicted nucleotide-binding domains Avi_1485 SM00966 SpoVT / AbrB like domain Avi_1487 SM00840 Avi_1487 Avi_1502 SM00984 UDP binding domain Avi_1507 SM00382 ATPases associated with a variety of cellular activities Avi_1508 SM01005 Alanine racemase, C-terminal domain Avi_1509 SM00342 helix_turn_helix, arabinose operon control protein Avi_1513 SM00062 Bacterial periplasmic substrate-binding proteins Avi_1515 SM00382 ATPases associated with a variety of cellular activities Avi_1527 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Avi_1528 SM00822 Avi_1528 Avi_1530 SM00823 Phosphopantetheine attachment site Avi_1531 SM00825 Beta-ketoacyl synthase Avi_1535 SM00072 Guanylate kinase homologues. Avi_1537 SM00650 Ribosomal RNA adenine dimethylases Avi_1547 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_1547 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_1549 SM00382 ATPases associated with a variety of cellular activities Avi_1552 SM00562 Avi_1552 Avi_1558 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Avi_1558 SM00465 GIY-YIG type nucleases (URI domain) Avi_1565 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Avi_1568 SM00849 Metallo-beta-lactamase superfamily Avi_1569 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Avi_1583 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_1583 SM00529 Helix-turn-helix diphteria tox regulatory element Avi_1588 SM00474 3'-5' exonuclease Avi_1595 SM00434 DNA Topoisomerase IV Avi_1597 SM00052 Putative diguanylate phosphodiesterase Avi_1597 SM00267 diguanylate cyclase Avi_1600 SM00052 Putative diguanylate phosphodiesterase Avi_1600 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Avi_1600 SM00267 diguanylate cyclase Avi_1603 SM01004 Delta-aminolevulinic acid dehydratase Avi_1606 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_1631 SM00411 bacterial (prokaryotic) histone like domain Avi_1633 SM00422 helix_turn_helix, mercury resistance Avi_1636 SM00387 Histidine kinase-like ATPases Avi_1638 SM00382 ATPases associated with a variety of cellular activities Avi_1642 SM00382 ATPases associated with a variety of cellular activities Avi_1645 SM00342 helix_turn_helix, arabinose operon control protein Avi_1654 SM00849 Metallo-beta-lactamase superfamily Avi_1655 SM00342 helix_turn_helix, arabinose operon control protein Avi_1674 SM00859 Semialdehyde dehydrogenase, NAD binding domain Avi_1684 SM00881 CoA binding domain Avi_1687 SM00881 CoA binding domain Avi_1695 SM00267 diguanylate cyclase Avi_1698 SM00382 ATPases associated with a variety of cellular activities Avi_1698 SM00994 ClpX C4-type zinc finger Avi_1698 SM01086 C-terminal, D2-small domain, of ClpB protein Avi_1700 SM00382 ATPases associated with a variety of cellular activities Avi_1700 SM00464 Found in ATP-dependent protease La (LON) Avi_1701 SM00411 bacterial (prokaryotic) histone like domain Avi_1703 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_1718 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Avi_1720 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Avi_1731 SM00849 Metallo-beta-lactamase superfamily Avi_1741 SM00382 ATPases associated with a variety of cellular activities Avi_1742 SM00481 DNA polymerase alpha chain like domain Avi_1749 SM00448 cheY-homologous receiver domain Avi_1750 SM00267 diguanylate cyclase Avi_1750 SM00448 cheY-homologous receiver domain Avi_1755 SM00316 Ribosomal protein S1-like RNA-binding domain Avi_1755 SM00955 Avi_1755 Avi_1756 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Avi_1756 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Avi_1756 SM00493 Avi_1756 Avi_1760 SM01207 Avi_1760 Avi_1768 SM00732 Likely ribonuclease with RNase H fold. Avi_1769 SM00849 Metallo-beta-lactamase superfamily Avi_1777 SM01259 Avi_1777 Avi_1781 SM00845 GatB domain Avi_1787 SM00878 Biotin carboxylase C-terminal domain Avi_1795 SM00646 Avi_1795 Avi_1799 SM00937 Avi_1799 Avi_1801 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Avi_1810 SM00967 RNA 2'-O ribose methyltransferase substrate binding Avi_1818 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Avi_1818 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Avi_1819 SM00649 Ribosomal protein L11/L12 Avi_1827 SM00663 RNA polymerase I subunit A N-terminus Avi_1835 SM00838 Elongation factor G C-terminus Avi_1835 SM00889 Elongation factor G, domain IV Avi_1839 SM01403 Avi_1839 Avi_1843 SM01382 Avi_1843 Avi_1843 SM01383 Avi_1843 Avi_1846 SM00322 K homology RNA-binding domain Avi_1850 SM01374 Avi_1850 Avi_1851 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Avi_1867 SM00662 RNA polymerases D Avi_1877 SM00450 Rhodanese Homology Domain Avi_1878 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Avi_1890 SM00421 helix_turn_helix, Lux Regulon Avi_1891 SM00919 Malic enzyme, NAD binding domain Avi_1891 SM01274 Avi_1891 Avi_1894 SM00382 ATPases associated with a variety of cellular activities Avi_1897 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_1902 SM01211 Avi_1902 Avi_1910 SM00267 diguanylate cyclase Avi_1913 SM01329 Avi_1913 Avi_1919 SM00116 Domain in cystathionine beta-synthase and other proteins. Avi_1919 SM01091 Transporter associated domain Avi_1920 SM00382 ATPases associated with a variety of cellular activities Avi_1923 SM00947 Carbonic anhydrase Avi_1927 SM00363 S4 RNA-binding domain Avi_1927 SM01390 Avi_1927 Avi_1945 SM00271 DnaJ molecular chaperone homology domain Avi_1947 SM00530 Helix-turn-helix XRE-family like proteins Avi_1998 SM00530 Helix-turn-helix XRE-family like proteins Avi_2012 SM01126 Avi_2012 Avi_2026 SM00100 Cyclic nucleotide-monophosphate binding domain Avi_2026 SM00419 helix_turn_helix, cAMP Regulatory protein Avi_2028 SM00729 Elongator protein 3, MiaB family, Radical SAM Avi_2035 SM00825 Beta-ketoacyl synthase Avi_2036 SM00829 Enoylreductase Avi_2043 SM00342 helix_turn_helix, arabinose operon control protein Avi_2051 SM00387 Histidine kinase-like ATPases Avi_2051 SM00388 His Kinase A (phosphoacceptor) domain Avi_2054 SM00986 Uracil DNA glycosylase superfamily Avi_2054 SM00987 UreE urease accessory protein, C-terminal domain Avi_2055 SM00344 helix_turn_helix ASNC type Avi_2066 SM00062 Bacterial periplasmic substrate-binding proteins Avi_2066 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Avi_2072 SM00729 Elongator protein 3, MiaB family, Radical SAM Avi_2075 SM00267 diguanylate cyclase Avi_2098 SM00052 Putative diguanylate phosphodiesterase Avi_2098 SM00267 diguanylate cyclase Avi_2099 SM00487 DEAD-like helicases superfamily Avi_2099 SM00490 helicase superfamily c-terminal domain Avi_2109 SM01192 Avi_2109 Avi_2109 SM01193 Avi_2109 Avi_2114 SM00861 Transketolase, pyrimidine binding domain Avi_2123 SM00729 Elongator protein 3, MiaB family, Radical SAM Avi_2134 SM00387 Histidine kinase-like ATPases Avi_2134 SM00388 His Kinase A (phosphoacceptor) domain Avi_2135 SM00382 ATPases associated with a variety of cellular activities Avi_2135 SM00448 cheY-homologous receiver domain Avi_2136 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_2136 SM00387 Histidine kinase-like ATPases Avi_2136 SM00388 His Kinase A (phosphoacceptor) domain Avi_2137 SM00382 ATPases associated with a variety of cellular activities Avi_2137 SM00448 cheY-homologous receiver domain Avi_2154 SM00936 Penicillin-binding protein 5, C-terminal domain Avi_2160 SM00849 Metallo-beta-lactamase superfamily Avi_2166 SM00382 ATPases associated with a variety of cellular activities Avi_2180 SM00382 ATPases associated with a variety of cellular activities Avi_2183 SM00833 Cobalamin synthesis protein cobW C-terminal domain Avi_2185 SM00382 ATPases associated with a variety of cellular activities Avi_2201 SM00014 Acid phosphatase homologues Avi_2203 SM00116 Domain in cystathionine beta-synthase and other proteins. Avi_2209 SM01234 Avi_2209 Avi_2211 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Avi_2221 SM00903 Flavin reductase like domain Avi_2226 SM00387 Histidine kinase-like ATPases Avi_2226 SM00433 TopoisomeraseII Avi_2229 SM00267 diguanylate cyclase Avi_2247 SM00905 Dihydroneopterin aldolase Avi_2286 SM00357 Cold shock protein domain Avi_2294 SM00481 DNA polymerase alpha chain like domain Avi_2342 SM01040 BRO family, N-terminal domain Avi_2363 SM00487 DEAD-like helicases superfamily Avi_2363 SM00490 helicase superfamily c-terminal domain Avi_2366 SM00487 DEAD-like helicases superfamily Avi_2366 SM00490 helicase superfamily c-terminal domain Avi_2366 SM00982 Avi_2366 Avi_2366 SM01058 CarD-like/TRCF domain Avi_2374 SM00992 Hemimethylated DNA-binding protein YccV like Avi_2375 SM01230 Avi_2375 Avi_2376 SM00938 Nitrogen regulatory protein P-II Avi_2386 SM00434 DNA Topoisomerase IV Avi_2396 SM01350 Avi_2396 Avi_2397 SM00849 Metallo-beta-lactamase superfamily Avi_2398 SM00354 helix_turn _helix lactose operon repressor Avi_2404 SM00382 ATPases associated with a variety of cellular activities Avi_2417 SM00998 Adenylosuccinate lyase C-terminus Avi_2423 SM00903 Flavin reductase like domain Avi_2431 SM00487 DEAD-like helicases superfamily Avi_2431 SM00490 helicase superfamily c-terminal domain Avi_2436 SM00382 ATPases associated with a variety of cellular activities Avi_2456 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Avi_2457 SM01092 CO dehydrogenase flavoprotein C-terminal domain Avi_2463 SM00091 PAS domain Avi_2463 SM00387 Histidine kinase-like ATPases Avi_2463 SM00388 His Kinase A (phosphoacceptor) domain Avi_2463 SM00448 cheY-homologous receiver domain Avi_2469 SM00855 Phosphoglycerate mutase family Avi_2484 SM00382 ATPases associated with a variety of cellular activities Avi_2485 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Avi_2490 SM00870 Avi_2490 Avi_2499 SM00382 ATPases associated with a variety of cellular activities Avi_2502 SM00796 Allophanate hydrolase subunit 1 Avi_2502 SM00797 Allophanate hydrolase subunit 2 Avi_2502 SM00878 Biotin carboxylase C-terminal domain Avi_2518 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Avi_2537 SM00382 ATPases associated with a variety of cellular activities Avi_2537 SM01086 C-terminal, D2-small domain, of ClpB protein Avi_2542 SM00971 Serine acetyltransferase, N-terminal Avi_2551 SM00062 Bacterial periplasmic substrate-binding proteins Avi_2554 SM00382 ATPases associated with a variety of cellular activities Avi_2557 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Avi_2558 SM00382 ATPases associated with a variety of cellular activities Avi_2569 SM00852 Probable molybdopterin binding domain Avi_2570 SM00014 Acid phosphatase homologues Avi_2575 SM00382 ATPases associated with a variety of cellular activities Avi_2590 SM00342 helix_turn_helix, arabinose operon control protein Avi_2600 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_2600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_2606 SM00852 Probable molybdopterin binding domain Avi_2608 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_2608 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_2609 SM00260 Two component signalling adaptor domain Avi_2617 SM00422 helix_turn_helix, mercury resistance Avi_2620 SM00116 Domain in cystathionine beta-synthase and other proteins. Avi_2620 SM00924 MgtE intracellular N domain Avi_2648 SM00833 Cobalamin synthesis protein cobW C-terminal domain Avi_2659 SM01323 Avi_2659 Avi_2662 SM00257 Lysin motif Avi_2675 SM00836 DALR anticodon binding domain Avi_2675 SM01016 Arginyl tRNA synthetase N terminal dom Avi_2676 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Avi_2681 SM00671 Sel1-like repeats. Avi_2698 SM00382 ATPases associated with a variety of cellular activities Avi_2699 SM00382 ATPases associated with a variety of cellular activities Avi_2701 SM00420 helix_turn_helix, Deoxyribose operon repressor Avi_2701 SM01134 Avi_2701 Avi_2706 SM00382 ATPases associated with a variety of cellular activities Avi_2723 SM00382 ATPases associated with a variety of cellular activities Avi_2726 SM00448 cheY-homologous receiver domain Avi_2728 SM00530 Helix-turn-helix XRE-family like proteins Avi_2736 SM00382 ATPases associated with a variety of cellular activities Avi_2764 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Avi_2775 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Avi_2775 SM00091 PAS domain Avi_2775 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_2776 SM00422 helix_turn_helix, mercury resistance Avi_2786 SM00344 helix_turn_helix ASNC type Avi_2791 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Avi_2791 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_2795 SM00421 helix_turn_helix, Lux Regulon Avi_2795 SM00422 helix_turn_helix, mercury resistance Avi_2812 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Avi_2816 SM00244 prohibitin homologues Avi_2818 SM00244 prohibitin homologues Avi_2830 SM00382 ATPases associated with a variety of cellular activities Avi_2843 SM00564 beta-propeller repeat Avi_2860 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_2860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_2861 SM00260 Two component signalling adaptor domain Avi_2865 SM00479 Avi_2865 Avi_2869 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_2871 SM00487 DEAD-like helicases superfamily Avi_2871 SM00490 helicase superfamily c-terminal domain Avi_2874 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_2876 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Avi_2876 SM00292 breast cancer carboxy-terminal domain Avi_2876 SM00532 Ligase N family Avi_2878 SM00155 Phospholipase D. Active site motifs. Avi_2882 SM00864 Tubulin/FtsZ family, GTPase domain Avi_2882 SM00865 Tubulin/FtsZ family, C-terminal domain Avi_2884 SM00842 Cell division protein FtsA Avi_2906 SM00644 Avi_2906 Avi_2908 SM00271 DnaJ molecular chaperone homology domain Avi_2919 SM00641 Glycosyl hydrolases family 25 Avi_2923 SM00342 helix_turn_helix, arabinose operon control protein Avi_2926 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Avi_2927 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_2927 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_2928 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_2928 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_2929 SM00382 ATPases associated with a variety of cellular activities Avi_2934 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_2951 SM00382 ATPases associated with a variety of cellular activities Avi_2952 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Avi_2952 SM00091 PAS domain Avi_2952 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_2957 SM00421 helix_turn_helix, Lux Regulon Avi_2958 SM00530 Helix-turn-helix XRE-family like proteins Avi_2962 SM00422 helix_turn_helix, mercury resistance Avi_2966 SM01018 B12 binding domain Avi_2977 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_3038 SM00470 ParB-like nuclease domain Avi_3045 SM00382 ATPases associated with a variety of cellular activities Avi_3076 SM00530 Helix-turn-helix XRE-family like proteins Avi_3086 SM00357 Cold shock protein domain Avi_3091 SM00028 Tetratricopeptide repeats Avi_3097 SM00052 Putative diguanylate phosphodiesterase Avi_3097 SM00267 diguanylate cyclase Avi_3106 SM00400 zinc finger Avi_3106 SM00493 Avi_3106 Avi_3108 SM00729 Elongator protein 3, MiaB family, Radical SAM Avi_3108 SM00876 Biotin and Thiamin Synthesis associated domain Avi_3111 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Avi_3122 SM00851 MGS-like domain Avi_3122 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Avi_3138 SM00344 helix_turn_helix ASNC type Avi_3142 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Avi_3156 SM00357 Cold shock protein domain Avi_3159 SM00849 Metallo-beta-lactamase superfamily Avi_3163 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_3164 SM00448 cheY-homologous receiver domain Avi_3164 SM00862 Transcriptional regulatory protein, C terminal Avi_3166 SM00387 Histidine kinase-like ATPases Avi_3166 SM00388 His Kinase A (phosphoacceptor) domain Avi_3177 SM01400 Avi_3177 Avi_3187 SM00052 Putative diguanylate phosphodiesterase Avi_3187 SM00091 PAS domain Avi_3187 SM00267 diguanylate cyclase Avi_3187 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_3200 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain Avi_3208 SM00382 ATPases associated with a variety of cellular activities Avi_3213 SM00382 ATPases associated with a variety of cellular activities Avi_3238 SM00849 Metallo-beta-lactamase superfamily Avi_3249 SM00917 LeuA allosteric (dimerisation) domain Avi_3250 SM00344 helix_turn_helix ASNC type Avi_3273 SM00421 helix_turn_helix, Lux Regulon Avi_3283 SM00382 ATPases associated with a variety of cellular activities Avi_3285 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Avi_3300 SM00642 Alpha-amylase domain Avi_3320 SM01092 CO dehydrogenase flavoprotein C-terminal domain Avi_3321 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Avi_3323 SM00028 Tetratricopeptide repeats Avi_3328 SM00382 ATPases associated with a variety of cellular activities Avi_3332 SM00344 helix_turn_helix ASNC type Avi_3336 SM00387 Histidine kinase-like ATPases Avi_3336 SM00388 His Kinase A (phosphoacceptor) domain Avi_3337 SM00448 cheY-homologous receiver domain Avi_3337 SM00862 Transcriptional regulatory protein, C terminal Avi_3342 SM00823 Phosphopantetheine attachment site Avi_3342 SM00824 Thioesterase Avi_3344 SM01230 Avi_3344 Avi_3348 SM00829 Enoylreductase Avi_3353 SM00091 PAS domain Avi_3353 SM00267 diguanylate cyclase Avi_3360 SM00091 PAS domain Avi_3360 SM00387 Histidine kinase-like ATPases Avi_3360 SM00388 His Kinase A (phosphoacceptor) domain Avi_3360 SM00448 cheY-homologous receiver domain Avi_3362 SM00487 DEAD-like helicases superfamily Avi_3362 SM00490 helicase superfamily c-terminal domain Avi_3376 SM00479 Avi_3376 Avi_3402 SM00382 ATPases associated with a variety of cellular activities Avi_3404 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Avi_3404 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Avi_3429 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_3432 SM00829 Enoylreductase Avi_3435 SM00460 Transglutaminase/protease-like homologues Avi_3440 SM00857 Resolvase, N terminal domain Avi_3451 SM00052 Putative diguanylate phosphodiesterase Avi_3451 SM00267 diguanylate cyclase Avi_3451 SM01079 Avi_3451 Avi_3458 SM00382 ATPases associated with a variety of cellular activities Avi_3466 SM00100 Cyclic nucleotide-monophosphate binding domain Avi_3466 SM00419 helix_turn_helix, cAMP Regulatory protein Avi_3467 SM00849 Metallo-beta-lactamase superfamily Avi_3470 SM00988 UreE urease accessory protein, N-terminal domain Avi_3471 SM00267 diguanylate cyclase Avi_3489 SM00382 ATPases associated with a variety of cellular activities Avi_3490 SM00382 ATPases associated with a variety of cellular activities Avi_3496 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Avi_3496 SM00448 cheY-homologous receiver domain Avi_3496 SM00911 HWE histidine kinase Avi_3498 SM00387 Histidine kinase-like ATPases Avi_3498 SM00388 His Kinase A (phosphoacceptor) domain Avi_3498 SM00448 cheY-homologous receiver domain Avi_3499 SM00421 helix_turn_helix, Lux Regulon Avi_3499 SM00448 cheY-homologous receiver domain Avi_3504 SM00966 SpoVT / AbrB like domain Avi_3512 SM00382 ATPases associated with a variety of cellular activities Avi_3513 SM00382 ATPases associated with a variety of cellular activities Avi_3527 SM00448 cheY-homologous receiver domain Avi_3527 SM00862 Transcriptional regulatory protein, C terminal Avi_3528 SM00448 cheY-homologous receiver domain Avi_3536 SM00363 S4 RNA-binding domain Avi_3544 SM00788 Adenylosuccinate synthetase Avi_3551 SM00382 ATPases associated with a variety of cellular activities Avi_3560 SM00986 Uracil DNA glycosylase superfamily Avi_3560 SM00987 UreE urease accessory protein, C-terminal domain Avi_3570 SM00382 ATPases associated with a variety of cellular activities Avi_3571 SM00822 Avi_3571 Avi_3581 SM00382 ATPases associated with a variety of cellular activities Avi_3583 SM00342 helix_turn_helix, arabinose operon control protein Avi_3590 SM00978 Avi_3590 Avi_3605 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Avi_3606 SM00966 SpoVT / AbrB like domain Avi_3609 SM00382 ATPases associated with a variety of cellular activities Avi_3627 SM00382 ATPases associated with a variety of cellular activities Avi_3637 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Avi_3638 SM00861 Transketolase, pyrimidine binding domain Avi_3647 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_3647 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_3655 SM00116 Domain in cystathionine beta-synthase and other proteins. Avi_3667 SM00382 ATPases associated with a variety of cellular activities Avi_3674 SM00671 Sel1-like repeats. Avi_3678 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Avi_3683 SM01001 AIR carboxylase Avi_3687 SM00028 Tetratricopeptide repeats Avi_3699 SM00382 ATPases associated with a variety of cellular activities Avi_3711 SM00257 Lysin motif Avi_3714 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_3714 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_3720 SM00244 prohibitin homologues Avi_3722 SM00116 Domain in cystathionine beta-synthase and other proteins. Avi_3729 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_3729 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_3732 SM00670 Large family of predicted nucleotide-binding domains Avi_3746 SM00448 cheY-homologous receiver domain Avi_3752 SM00460 Transglutaminase/protease-like homologues Avi_3755 SM00460 Transglutaminase/protease-like homologues Avi_3760 SM00642 Alpha-amylase domain Avi_3764 SM00642 Alpha-amylase domain Avi_3772 SM00028 Tetratricopeptide repeats Avi_3788 SM00530 Helix-turn-helix XRE-family like proteins Avi_3792 SM00354 helix_turn _helix lactose operon repressor Avi_3793 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_3796 SM00833 Cobalamin synthesis protein cobW C-terminal domain Avi_3798 SM00320 WD40 repeats Avi_3799 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_3799 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_3819 SM01118 Avi_3819 Avi_3820 SM00880 Avi_3820 Avi_3823 SM00450 Rhodanese Homology Domain Avi_3825 SM00052 Putative diguanylate phosphodiesterase Avi_3834 SM00354 helix_turn _helix lactose operon repressor Avi_3842 SM00478 endonuclease III Avi_3845 SM00342 helix_turn_helix, arabinose operon control protein Avi_3861 SM00671 Sel1-like repeats. Avi_3863 SM00382 ATPases associated with a variety of cellular activities Avi_3865 SM00028 Tetratricopeptide repeats Avi_3866 SM00028 Tetratricopeptide repeats Avi_3871 SM00382 ATPases associated with a variety of cellular activities Avi_3880 SM00382 ATPases associated with a variety of cellular activities Avi_3884 SM00382 ATPases associated with a variety of cellular activities Avi_3885 SM00382 ATPases associated with a variety of cellular activities Avi_3891 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_3891 SM00895 Avi_3891 Avi_3898 SM00858 Avi_3898 Avi_3900 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Avi_3900 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Avi_3905 SM00382 ATPases associated with a variety of cellular activities Avi_3919 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_3919 SM00895 Avi_3919 Avi_3921 SM00028 Tetratricopeptide repeats Avi_3921 SM01359 Avi_3921 Avi_3921 SM01360 Avi_3921 Avi_3923 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_3923 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_3932 SM00382 ATPases associated with a variety of cellular activities Avi_3939 SM00984 UDP binding domain Avi_3942 SM00100 Cyclic nucleotide-monophosphate binding domain Avi_3947 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_3947 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_3951 SM00382 ATPases associated with a variety of cellular activities Avi_3951 SM01086 C-terminal, D2-small domain, of ClpB protein Avi_3955 SM00937 Avi_3955 Avi_3956 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Avi_3964 SM00287 Bacterial SH3 domain homologues Avi_3982 SM00957 SecA DEAD-like domain Avi_3982 SM00958 SecA preprotein cross-linking domain Avi_3988 SM00267 diguanylate cyclase Avi_3996 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_4001 SM00507 HNH nucleases Avi_4002 SM00478 endonuclease III Avi_4010 SM00893 Electron transfer flavoprotein domain Avi_4012 SM00893 Electron transfer flavoprotein domain Avi_4013 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_4013 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_4023 SM00448 cheY-homologous receiver domain Avi_4027 SM00382 ATPases associated with a variety of cellular activities Avi_4030 SM00563 Phosphate acyltransferases Avi_4036 SM00849 Metallo-beta-lactamase superfamily Avi_4045 SM00327 von Willebrand factor (vWF) type A domain Avi_4048 SM00271 DnaJ molecular chaperone homology domain Avi_4060 SM00833 Cobalamin synthesis protein cobW C-terminal domain Avi_4065 SM00421 helix_turn_helix, Lux Regulon Avi_4066 SM00421 helix_turn_helix, Lux Regulon Avi_4072 SM00448 cheY-homologous receiver domain Avi_4073 SM00448 cheY-homologous receiver domain Avi_4074 SM00138 Methyltransferase, chemotaxis proteins Avi_4076 SM00260 Two component signalling adaptor domain Avi_4077 SM00260 Two component signalling adaptor domain Avi_4077 SM00387 Histidine kinase-like ATPases Avi_4077 SM01231 Avi_4077 Avi_4079 SM00448 cheY-homologous receiver domain Avi_4081 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_4091 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Avi_4091 SM00091 PAS domain Avi_4091 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_4092 SM00260 Two component signalling adaptor domain Avi_4097 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Avi_4097 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Avi_4098 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Avi_4102 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Avi_4106 SM00382 ATPases associated with a variety of cellular activities Avi_4112 SM00487 DEAD-like helicases superfamily Avi_4112 SM00490 helicase superfamily c-terminal domain Avi_4113 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_4113 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_4122 SM00861 Transketolase, pyrimidine binding domain Avi_4124 SM00881 CoA binding domain Avi_4153 SM01152 Avi_4153 Avi_4156 SM00838 Elongation factor G C-terminus Avi_4180 SM00382 ATPases associated with a variety of cellular activities Avi_4188 SM00382 ATPases associated with a variety of cellular activities Avi_4196 SM00382 ATPases associated with a variety of cellular activities Avi_4196 SM00962 SRP54-type protein, GTPase domain Avi_4196 SM00963 SRP54-type protein, helical bundle domain Avi_4197 SM00729 Elongator protein 3, MiaB family, Radical SAM Avi_4203 SM00382 ATPases associated with a variety of cellular activities Avi_4203 SM00962 SRP54-type protein, GTPase domain Avi_4203 SM00963 SRP54-type protein, helical bundle domain Avi_4204 SM00830 Chorismate mutase type II Avi_4217 SM00062 Bacterial periplasmic substrate-binding proteins Avi_4217 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Avi_4227 SM00448 cheY-homologous receiver domain Avi_4227 SM00862 Transcriptional regulatory protein, C terminal Avi_4229 SM00100 Cyclic nucleotide-monophosphate binding domain Avi_4231 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain Avi_4236 SM00382 ATPases associated with a variety of cellular activities Avi_4236 SM00843 Avi_4236 Avi_4239 SM00938 Nitrogen regulatory protein P-II Avi_4244 SM00464 Found in ATP-dependent protease La (LON) Avi_4254 SM00382 ATPases associated with a variety of cellular activities Avi_4260 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain Avi_4261 SM00382 ATPases associated with a variety of cellular activities Avi_4268 SM00382 ATPases associated with a variety of cellular activities Avi_4281 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Avi_4292 SM00798 AICARFT/IMPCHase bienzyme Avi_4292 SM00851 MGS-like domain Avi_4300 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Avi_4300 SM00245 tail specific protease Avi_4309 SM00448 cheY-homologous receiver domain Avi_4310 SM00138 Methyltransferase, chemotaxis proteins Avi_4311 SM00260 Two component signalling adaptor domain Avi_4312 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_4312 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_4313 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_4313 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_4314 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_4314 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_4315 SM00260 Two component signalling adaptor domain Avi_4316 SM00073 Histidine Phosphotransfer domain Avi_4316 SM00260 Two component signalling adaptor domain Avi_4316 SM00387 Histidine kinase-like ATPases Avi_4316 SM01231 Avi_4316 Avi_4317 SM00448 cheY-homologous receiver domain Avi_4319 SM00448 cheY-homologous receiver domain Avi_4319 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Avi_4324 SM00344 helix_turn_helix ASNC type Avi_4328 SM00822 Avi_4328 Avi_4330 SM00822 Avi_4330 Avi_4330 SM00823 Phosphopantetheine attachment site Avi_4330 SM00825 Beta-ketoacyl synthase Avi_4330 SM00826 Avi_4330 Avi_4330 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Avi_4330 SM00829 Enoylreductase Avi_4345 SM00822 Avi_4345 Avi_4347 SM00490 helicase superfamily c-terminal domain Avi_4348 SM00363 S4 RNA-binding domain Avi_4352 SM01058 CarD-like/TRCF domain Avi_4359 SM01329 Avi_4359 Avi_4360 SM00014 Acid phosphatase homologues Avi_4363 SM00859 Semialdehyde dehydrogenase, NAD binding domain Avi_4366 SM00947 Carbonic anhydrase Avi_4370 SM01068 Putative carbohydrate binding domain Avi_4373 SM00382 ATPases associated with a variety of cellular activities Avi_4374 SM00421 helix_turn_helix, Lux Regulon Avi_4375 SM00878 Biotin carboxylase C-terminal domain Avi_4385 SM00470 ParB-like nuclease domain Avi_4389 SM01228 Avi_4389 Avi_4390 SM00382 ATPases associated with a variety of cellular activities Avi_4391 SM00357 Cold shock protein domain Avi_4391 SM00382 ATPases associated with a variety of cellular activities Avi_4391 SM00959 Rho termination factor, N-terminal domain Avi_5001 SM00470 ParB-like nuclease domain Avi_5003 SM00155 Phospholipase D. Active site motifs. Avi_5010 SM00344 helix_turn_helix ASNC type Avi_5012 SM00382 ATPases associated with a variety of cellular activities Avi_5014 SM00062 Bacterial periplasmic substrate-binding proteins Avi_5021 SM00382 ATPases associated with a variety of cellular activities Avi_5038 SM00354 helix_turn _helix lactose operon repressor Avi_5042 SM00382 ATPases associated with a variety of cellular activities Avi_5049 SM00382 ATPases associated with a variety of cellular activities Avi_5052 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_5052 SM00895 Avi_5052 Avi_5055 SM00342 helix_turn_helix, arabinose operon control protein Avi_5059 SM00382 ATPases associated with a variety of cellular activities Avi_5061 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_5061 SM00895 Avi_5061 Avi_5072 SM00028 Tetratricopeptide repeats Avi_5077 SM00903 Flavin reductase like domain Avi_5085 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_5085 SM00895 Avi_5085 Avi_5093 SM00346 helix_turn_helix isocitrate lyase regulation Avi_5096 SM00267 diguanylate cyclase Avi_5097 SM00460 Transglutaminase/protease-like homologues Avi_5101 SM00460 Transglutaminase/protease-like homologues Avi_5106 SM01092 CO dehydrogenase flavoprotein C-terminal domain Avi_5107 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Avi_5108 SM00387 Histidine kinase-like ATPases Avi_5108 SM00388 His Kinase A (phosphoacceptor) domain Avi_5108 SM00448 cheY-homologous receiver domain Avi_5116 SM00382 ATPases associated with a variety of cellular activities Avi_5122 SM00342 helix_turn_helix, arabinose operon control protein Avi_5125 SM00448 cheY-homologous receiver domain Avi_5125 SM00862 Transcriptional regulatory protein, C terminal Avi_5126 SM00387 Histidine kinase-like ATPases Avi_5127 SM00271 DnaJ molecular chaperone homology domain Avi_5128 SM00829 Enoylreductase Avi_5129 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Avi_5135 SM00382 ATPases associated with a variety of cellular activities Avi_5136 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_5136 SM00895 Avi_5136 Avi_5140 SM00382 ATPases associated with a variety of cellular activities Avi_5143 SM00354 helix_turn _helix lactose operon repressor Avi_5146 SM00382 ATPases associated with a variety of cellular activities Avi_5150 SM00382 ATPases associated with a variety of cellular activities Avi_5151 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_5151 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_5161 SM00382 ATPases associated with a variety of cellular activities Avi_5167 SM00382 ATPases associated with a variety of cellular activities Avi_5170 SM00062 Bacterial periplasmic substrate-binding proteins Avi_5173 SM00382 ATPases associated with a variety of cellular activities Avi_5181 SM00382 ATPases associated with a variety of cellular activities Avi_5186 SM00869 Autotransporter beta-domain Avi_5188 SM00421 helix_turn_helix, Lux Regulon Avi_5188 SM00448 cheY-homologous receiver domain Avi_5189 SM00387 Histidine kinase-like ATPases Avi_5189 SM00388 His Kinase A (phosphoacceptor) domain Avi_5189 SM00448 cheY-homologous receiver domain Avi_5193 SM01130 Avi_5193 Avi_5195 SM00354 helix_turn _helix lactose operon repressor Avi_5205 SM00062 Bacterial periplasmic substrate-binding proteins Avi_5206 SM00062 Bacterial periplasmic substrate-binding proteins Avi_5209 SM00387 Histidine kinase-like ATPases Avi_5209 SM00388 His Kinase A (phosphoacceptor) domain Avi_5210 SM00448 cheY-homologous receiver domain Avi_5210 SM00862 Transcriptional regulatory protein, C terminal Avi_5215 SM00342 helix_turn_helix, arabinose operon control protein Avi_5217 SM00903 Flavin reductase like domain Avi_5228 SM00342 helix_turn_helix, arabinose operon control protein Avi_5230 SM01007 Class II Aldolase and Adducin N-terminal domain Avi_5248 SM00564 beta-propeller repeat Avi_5254 SM00382 ATPases associated with a variety of cellular activities Avi_5260 SM00060 Fibronectin type 3 domain Avi_5260 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Avi_5260 SM00736 Dystroglycan-type cadherin-like domains. Avi_5260 SM00869 Autotransporter beta-domain Avi_5272 SM00382 ATPases associated with a variety of cellular activities Avi_5284 SM00382 ATPases associated with a variety of cellular activities Avi_5287 SM00421 helix_turn_helix, Lux Regulon Avi_5292 SM00382 ATPases associated with a variety of cellular activities Avi_5293 SM00382 ATPases associated with a variety of cellular activities Avi_5294 SM00382 ATPases associated with a variety of cellular activities Avi_5296 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_5303 SM00419 helix_turn_helix, cAMP Regulatory protein Avi_5304 SM00382 ATPases associated with a variety of cellular activities Avi_5308 SM00822 Avi_5308 Avi_5309 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_5310 SM00903 Flavin reductase like domain Avi_5326 SM01060 Avi_5326 Avi_5328 SM00382 ATPases associated with a variety of cellular activities Avi_5337 SM01133 Avi_5337 Avi_5342 SM00382 ATPases associated with a variety of cellular activities Avi_5347 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_5347 SM00895 Avi_5347 Avi_5352 SM00382 ATPases associated with a variety of cellular activities Avi_5354 SM00382 ATPases associated with a variety of cellular activities Avi_5356 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_5356 SM00895 Avi_5356 Avi_5362 SM00382 ATPases associated with a variety of cellular activities Avi_5373 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_5373 SM00895 Avi_5373 Avi_5374 SM00421 helix_turn_helix, Lux Regulon Avi_5377 SM00382 ATPases associated with a variety of cellular activities Avi_5382 SM00448 cheY-homologous receiver domain Avi_5383 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Avi_5383 SM00091 PAS domain Avi_5383 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_5383 SM00387 Histidine kinase-like ATPases Avi_5383 SM00388 His Kinase A (phosphoacceptor) domain Avi_5383 SM00448 cheY-homologous receiver domain Avi_5384 SM00421 helix_turn_helix, Lux Regulon Avi_5384 SM00448 cheY-homologous receiver domain Avi_5386 SM00387 Histidine kinase-like ATPases Avi_5390 SM00382 ATPases associated with a variety of cellular activities Avi_5394 SM00354 helix_turn _helix lactose operon repressor Avi_5401 SM00382 ATPases associated with a variety of cellular activities Avi_5404 SM00382 ATPases associated with a variety of cellular activities Avi_5411 SM01038 Beta galactosidase small chain Avi_5419 SM00382 ATPases associated with a variety of cellular activities Avi_5433 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Avi_5436 SM00882 Coenzyme A transferase Avi_5437 SM00882 Coenzyme A transferase Avi_5438 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_5438 SM00895 Avi_5438 Avi_5447 SM00382 ATPases associated with a variety of cellular activities Avi_5448 SM00382 ATPases associated with a variety of cellular activities Avi_5456 SM00382 ATPases associated with a variety of cellular activities Avi_5457 SM00062 Bacterial periplasmic substrate-binding proteins Avi_5461 SM00642 Alpha-amylase domain Avi_5462 SM00642 Alpha-amylase domain Avi_5467 SM00382 ATPases associated with a variety of cellular activities Avi_5469 SM00062 Bacterial periplasmic substrate-binding proteins Avi_5471 SM00062 Bacterial periplasmic substrate-binding proteins Avi_5477 SM00903 Flavin reductase like domain Avi_5496 SM00382 ATPases associated with a variety of cellular activities Avi_5501 SM00387 Histidine kinase-like ATPases Avi_5501 SM00388 His Kinase A (phosphoacceptor) domain Avi_5502 SM00421 helix_turn_helix, Lux Regulon Avi_5502 SM00448 cheY-homologous receiver domain Avi_5504 SM00382 ATPases associated with a variety of cellular activities Avi_5511 SM00382 ATPases associated with a variety of cellular activities Avi_5518 SM00382 ATPases associated with a variety of cellular activities Avi_5520 SM00382 ATPases associated with a variety of cellular activities Avi_5521 SM00448 cheY-homologous receiver domain Avi_5521 SM00862 Transcriptional regulatory protein, C terminal Avi_5522 SM00387 Histidine kinase-like ATPases Avi_5522 SM00388 His Kinase A (phosphoacceptor) domain Avi_5539 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Avi_5539 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Avi_5539 SM00911 HWE histidine kinase Avi_5540 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Avi_5540 SM00091 PAS domain Avi_5541 SM00448 cheY-homologous receiver domain Avi_5545 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Avi_5545 SM00091 PAS domain Avi_5545 SM00387 Histidine kinase-like ATPases Avi_5545 SM00388 His Kinase A (phosphoacceptor) domain Avi_5545 SM00448 cheY-homologous receiver domain Avi_5550 SM00382 ATPases associated with a variety of cellular activities Avi_5552 SM00062 Bacterial periplasmic substrate-binding proteins Avi_5552 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Avi_5553 SM00354 helix_turn _helix lactose operon repressor Avi_5554 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_5554 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_5555 SM00260 Two component signalling adaptor domain Avi_5559 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_5559 SM00895 Avi_5559 Avi_5562 SM00422 helix_turn_helix, mercury resistance Avi_5563 SM00642 Alpha-amylase domain Avi_5564 SM00642 Alpha-amylase domain Avi_5565 SM00642 Alpha-amylase domain Avi_5567 SM00357 Cold shock protein domain Avi_5575 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_5575 SM00895 Avi_5575 Avi_5576 SM01130 Avi_5576 Avi_5578 SM00872 Alpha mannosidase, middle domain Avi_5585 SM00382 ATPases associated with a variety of cellular activities Avi_5589 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_5589 SM00911 HWE histidine kinase Avi_5592 SM00382 ATPases associated with a variety of cellular activities Avi_5593 SM00911 HWE histidine kinase Avi_5594 SM00100 Cyclic nucleotide-monophosphate binding domain Avi_5598 SM00346 helix_turn_helix isocitrate lyase regulation Avi_5602 SM00052 Putative diguanylate phosphodiesterase Avi_5602 SM00267 diguanylate cyclase Avi_5604 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Avi_5607 SM00100 Cyclic nucleotide-monophosphate binding domain Avi_5610 SM00382 ATPases associated with a variety of cellular activities Avi_5619 SM00823 Phosphopantetheine attachment site Avi_5619 SM01294 Avi_5619 Avi_5624 SM00822 Avi_5624 Avi_5624 SM00825 Beta-ketoacyl synthase Avi_5624 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Avi_5625 SM00825 Beta-ketoacyl synthase Avi_5625 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Avi_5630 SM00382 ATPases associated with a variety of cellular activities Avi_5631 SM00382 ATPases associated with a variety of cellular activities Avi_5638 SM01012 Avi_5638 Avi_5644 SM00382 ATPases associated with a variety of cellular activities Avi_5646 SM00382 ATPases associated with a variety of cellular activities Avi_5652 SM00382 ATPases associated with a variety of cellular activities Avi_5660 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_5660 SM00895 Avi_5660 Avi_5661 SM00382 ATPases associated with a variety of cellular activities Avi_5683 SM00878 Biotin carboxylase C-terminal domain Avi_5688 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_5697 SM00382 ATPases associated with a variety of cellular activities Avi_5701 SM01130 Avi_5701 Avi_5703 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_5703 SM00895 Avi_5703 Avi_5706 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Avi_5707 SM00813 Alpha-L-arabinofuranosidase C-terminus Avi_5708 SM00382 ATPases associated with a variety of cellular activities Avi_5725 SM00421 helix_turn_helix, Lux Regulon Avi_5729 SM01006 Siderophore biosynthesis protein domain Avi_5735 SM00342 helix_turn_helix, arabinose operon control protein Avi_5741 SM00382 ATPases associated with a variety of cellular activities Avi_5747 SM00342 helix_turn_helix, arabinose operon control protein Avi_5748 SM00530 Helix-turn-helix XRE-family like proteins Avi_5752 SM01230 Avi_5752 Avi_5759 SM00710 Parallel beta-helix repeats Avi_5760 SM00382 ATPases associated with a variety of cellular activities Avi_5764 SM00354 helix_turn _helix lactose operon repressor Avi_5768 SM00829 Enoylreductase Avi_5770 SM00116 Domain in cystathionine beta-synthase and other proteins. Avi_5770 SM01240 Avi_5770 Avi_5812 SM00421 helix_turn_helix, Lux Regulon Avi_5815 SM00829 Enoylreductase Avi_5823 SM01130 Avi_5823 Avi_5826 SM00904 Riboflavin kinase Avi_5829 SM00883 Chaperonin 10 Kd subunit Avi_5835 SM00382 ATPases associated with a variety of cellular activities Avi_5845 SM00878 Biotin carboxylase C-terminal domain Avi_5847 SM00796 Allophanate hydrolase subunit 1 Avi_5847 SM00797 Allophanate hydrolase subunit 2 Avi_5853 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_5853 SM00895 Avi_5853 Avi_5854 SM00344 helix_turn_helix ASNC type Avi_5868 SM00878 Biotin carboxylase C-terminal domain Avi_5869 SM00796 Allophanate hydrolase subunit 1 Avi_5870 SM00797 Allophanate hydrolase subunit 2 Avi_5871 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_5871 SM00895 Avi_5871 Avi_5873 SM00382 ATPases associated with a variety of cellular activities Avi_5881 SM00382 ATPases associated with a variety of cellular activities Avi_5884 SM00833 Cobalamin synthesis protein cobW C-terminal domain Avi_5887 SM00344 helix_turn_helix ASNC type Avi_5892 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Avi_5895 SM00382 ATPases associated with a variety of cellular activities Avi_5900 SM00448 cheY-homologous receiver domain Avi_5900 SM01012 Avi_5900 Avi_5963 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_5963 SM00866 Avi_5963 Avi_5964 SM00382 ATPases associated with a variety of cellular activities Avi_5967 SM00062 Bacterial periplasmic substrate-binding proteins Avi_5967 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Avi_5969 SM00382 ATPases associated with a variety of cellular activities Avi_5976 SM00344 helix_turn_helix ASNC type Avi_5999 SM00911 HWE histidine kinase Avi_6000 SM00448 cheY-homologous receiver domain Avi_6026 SM00841 Elongation factor P, C-terminal Avi_6026 SM01185 Avi_6026 Avi_6039 SM00220 Serine/Threonine protein kinases, catalytic domain Avi_6040 SM00331 Sigma factor PP2C-like phosphatases Avi_6040 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Avi_6044 SM00240 Forkhead associated domain Avi_6053 SM00382 ATPases associated with a variety of cellular activities Avi_6053 SM01086 C-terminal, D2-small domain, of ClpB protein Avi_6064 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Avi_6070 SM00448 cheY-homologous receiver domain Avi_6070 SM00862 Transcriptional regulatory protein, C terminal Avi_6071 SM00387 Histidine kinase-like ATPases Avi_6071 SM00388 His Kinase A (phosphoacceptor) domain Avi_6077 SM00341 Helicase and RNase D C-terminal Avi_6077 SM00487 DEAD-like helicases superfamily Avi_6077 SM00490 helicase superfamily c-terminal domain Avi_6077 SM00956 Avi_6077 Avi_6080 SM01005 Alanine racemase, C-terminal domain Avi_6081 SM00344 helix_turn_helix ASNC type Avi_6082 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_6082 SM00895 Avi_6082 Avi_6086 SM00903 Flavin reductase like domain Avi_6092 SM00382 ATPases associated with a variety of cellular activities Avi_6099 SM00382 ATPases associated with a variety of cellular activities Avi_6102 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_6102 SM00895 Avi_6102 Avi_6103 SM00858 Avi_6103 Avi_6105 SM00822 Avi_6105 Avi_6107 SM00387 Histidine kinase-like ATPases Avi_6107 SM00388 His Kinase A (phosphoacceptor) domain Avi_6108 SM00448 cheY-homologous receiver domain Avi_6108 SM00862 Transcriptional regulatory protein, C terminal Avi_6118 SM00882 Coenzyme A transferase Avi_6120 SM00882 Coenzyme A transferase Avi_6121 SM00346 helix_turn_helix isocitrate lyase regulation Avi_6122 SM00342 helix_turn_helix, arabinose operon control protein Avi_6131 SM00829 Enoylreductase Avi_6133 SM00382 ATPases associated with a variety of cellular activities Avi_6133 SM00843 Avi_6133 Avi_6134 SM00382 ATPases associated with a variety of cellular activities Avi_6143 SM00382 ATPases associated with a variety of cellular activities Avi_6144 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_6144 SM00387 Histidine kinase-like ATPases Avi_6144 SM00388 His Kinase A (phosphoacceptor) domain Avi_6145 SM00448 cheY-homologous receiver domain Avi_6145 SM00862 Transcriptional regulatory protein, C terminal Avi_6154 SM00480 DNA polymerase III beta subunit Avi_6164 SM00530 Helix-turn-helix XRE-family like proteins Avi_6165 SM00530 Helix-turn-helix XRE-family like proteins Avi_6166 SM00530 Helix-turn-helix XRE-family like proteins Avi_6173 SM00843 Avi_6173 Avi_6227 SM00387 Histidine kinase-like ATPases Avi_6227 SM00388 His Kinase A (phosphoacceptor) domain Avi_6228 SM00382 ATPases associated with a variety of cellular activities Avi_6228 SM00448 cheY-homologous receiver domain Avi_6236 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_6236 SM00866 Avi_6236 Avi_6242 SM00382 ATPases associated with a variety of cellular activities Avi_6243 SM01119 Avi_6243 Avi_6257 SM00758 Avi_6257 Avi_6257 SM01217 Avi_6257 Avi_6258 SM00387 Histidine kinase-like ATPases Avi_6258 SM00388 His Kinase A (phosphoacceptor) domain Avi_6259 SM00448 cheY-homologous receiver domain Avi_6259 SM00862 Transcriptional regulatory protein, C terminal Avi_6264 SM01007 Class II Aldolase and Adducin N-terminal domain Avi_6265 SM00420 helix_turn_helix, Deoxyribose operon repressor Avi_6265 SM01134 Avi_6265 Avi_6267 SM00382 ATPases associated with a variety of cellular activities Avi_6273 SM00052 Putative diguanylate phosphodiesterase Avi_6273 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Avi_6273 SM00267 diguanylate cyclase Avi_6279 SM00382 ATPases associated with a variety of cellular activities Avi_6280 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_6280 SM00895 Avi_6280 Avi_6284 SM00382 ATPases associated with a variety of cellular activities Avi_7001 SM00470 ParB-like nuclease domain Avi_7005 SM00028 Tetratricopeptide repeats Avi_7005 SM00267 diguanylate cyclase Avi_7020 SM00382 ATPases associated with a variety of cellular activities Avi_7021 SM00382 ATPases associated with a variety of cellular activities Avi_7026 SM00382 ATPases associated with a variety of cellular activities Avi_7027 SM00382 ATPases associated with a variety of cellular activities Avi_7035 SM00470 ParB-like nuclease domain Avi_7040 SM00342 helix_turn_helix, arabinose operon control protein Avi_7042 SM00411 bacterial (prokaryotic) histone like domain Avi_7047 SM00773 Proposed nucleic acid binding domain Avi_7057 SM00773 Proposed nucleic acid binding domain Avi_7070 SM00342 helix_turn_helix, arabinose operon control protein Avi_7073 SM00530 Helix-turn-helix XRE-family like proteins Avi_7080 SM00346 helix_turn_helix isocitrate lyase regulation Avi_7088 SM00382 ATPases associated with a variety of cellular activities Avi_7089 SM00382 ATPases associated with a variety of cellular activities Avi_7128 SM00903 Flavin reductase like domain Avi_7132 SM00382 ATPases associated with a variety of cellular activities Avi_7156 SM00382 ATPases associated with a variety of cellular activities Avi_7161 SM00382 ATPases associated with a variety of cellular activities Avi_7163 SM00062 Bacterial periplasmic substrate-binding proteins Avi_7165 SM00382 ATPases associated with a variety of cellular activities Avi_7172 SM00382 ATPases associated with a variety of cellular activities Avi_7185 SM00382 ATPases associated with a variety of cellular activities Avi_7187 SM00382 ATPases associated with a variety of cellular activities Avi_7191 SM00382 ATPases associated with a variety of cellular activities Avi_7198 SM00062 Bacterial periplasmic substrate-binding proteins Avi_7199 SM00382 ATPases associated with a variety of cellular activities Avi_7201 SM00382 ATPases associated with a variety of cellular activities Avi_7222 SM00382 ATPases associated with a variety of cellular activities Avi_7224 SM00062 Bacterial periplasmic substrate-binding proteins Avi_7227 SM00382 ATPases associated with a variety of cellular activities Avi_7230 SM00382 ATPases associated with a variety of cellular activities Avi_7230 SM00930 Avi_7230 Avi_7234 SM00382 ATPases associated with a variety of cellular activities Avi_7238 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_7238 SM00895 Avi_7238 Avi_7239 SM00062 Bacterial periplasmic substrate-binding proteins Avi_7239 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Avi_7250 SM00342 helix_turn_helix, arabinose operon control protein Avi_7254 SM00382 ATPases associated with a variety of cellular activities Avi_7258 SM01130 Avi_7258 Avi_7259 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_7259 SM00895 Avi_7259 Avi_7262 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_7262 SM00895 Avi_7262 Avi_7268 SM00420 helix_turn_helix, Deoxyribose operon repressor Avi_7268 SM01134 Avi_7268 Avi_7269 SM00382 ATPases associated with a variety of cellular activities Avi_7274 SM00869 Autotransporter beta-domain Avi_7287 SM00382 ATPases associated with a variety of cellular activities Avi_7293 SM00965 Secretin and TonB N terminus short domain Avi_7296 SM00823 Phosphopantetheine attachment site Avi_7298 SM00823 Phosphopantetheine attachment site Avi_7299 SM00822 Avi_7299 Avi_7299 SM00823 Phosphopantetheine attachment site Avi_7299 SM00825 Beta-ketoacyl synthase Avi_7299 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Avi_7306 SM00823 Phosphopantetheine attachment site Avi_7308 SM00823 Phosphopantetheine attachment site Avi_7308 SM01294 Avi_7308 Avi_7309 SM00822 Avi_7309 Avi_7309 SM00823 Phosphopantetheine attachment site Avi_7309 SM00825 Beta-ketoacyl synthase Avi_7309 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Avi_7311 SM00823 Phosphopantetheine attachment site Avi_7320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_7320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_7329 SM00382 ATPases associated with a variety of cellular activities Avi_7334 SM00872 Alpha mannosidase, middle domain Avi_7338 SM00382 ATPases associated with a variety of cellular activities Avi_7343 SM00382 ATPases associated with a variety of cellular activities Avi_7351 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_7351 SM00895 Avi_7351 Avi_7352 SM00773 Proposed nucleic acid binding domain Avi_7355 SM00382 ATPases associated with a variety of cellular activities Avi_7365 SM00382 ATPases associated with a variety of cellular activities Avi_7370 SM00342 helix_turn_helix, arabinose operon control protein Avi_7371 SM00829 Enoylreductase Avi_7377 SM00382 ATPases associated with a variety of cellular activities Avi_7379 SM00354 helix_turn _helix lactose operon repressor Avi_7382 SM00342 helix_turn_helix, arabinose operon control protein Avi_7389 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Avi_7393 SM00062 Bacterial periplasmic substrate-binding proteins Avi_7402 SM00346 helix_turn_helix isocitrate lyase regulation Avi_7406 SM00903 Flavin reductase like domain Avi_7409 SM00346 helix_turn_helix isocitrate lyase regulation Avi_7413 SM00882 Coenzyme A transferase Avi_7431 SM00346 helix_turn_helix isocitrate lyase regulation Avi_7436 SM00382 ATPases associated with a variety of cellular activities Avi_7437 SM00382 ATPases associated with a variety of cellular activities Avi_7446 SM00872 Alpha mannosidase, middle domain Avi_7453 SM00382 ATPases associated with a variety of cellular activities Avi_7459 SM00344 helix_turn_helix ASNC type Avi_7466 SM00986 Uracil DNA glycosylase superfamily Avi_7466 SM00987 UreE urease accessory protein, C-terminal domain Avi_7472 SM00354 helix_turn _helix lactose operon repressor Avi_7475 SM00382 ATPases associated with a variety of cellular activities Avi_7488 SM00448 cheY-homologous receiver domain Avi_7488 SM00862 Transcriptional regulatory protein, C terminal Avi_7490 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_7490 SM00387 Histidine kinase-like ATPases Avi_7490 SM00388 His Kinase A (phosphoacceptor) domain Avi_7508 SM00062 Bacterial periplasmic substrate-binding proteins Avi_7508 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Avi_7509 SM00382 ATPases associated with a variety of cellular activities Avi_7513 SM00344 helix_turn_helix ASNC type Avi_7520 SM00382 ATPases associated with a variety of cellular activities Avi_7522 SM00382 ATPases associated with a variety of cellular activities Avi_7533 SM00382 ATPases associated with a variety of cellular activities Avi_7536 SM00382 ATPases associated with a variety of cellular activities Avi_7544 SM00327 von Willebrand factor (vWF) type A domain Avi_7546 SM00773 Proposed nucleic acid binding domain Avi_7550 SM00788 Adenylosuccinate synthetase Avi_7558 SM00248 ankyrin repeats Avi_7571 SM01350 Avi_7571 Avi_7573 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_7577 SM00729 Elongator protein 3, MiaB family, Radical SAM Avi_7593 SM00382 ATPases associated with a variety of cellular activities Avi_7599 SM00903 Flavin reductase like domain Avi_7604 SM00382 ATPases associated with a variety of cellular activities Avi_7606 SM00062 Bacterial periplasmic substrate-binding proteins Avi_7611 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_7611 SM00895 Avi_7611 Avi_7617 SM00382 ATPases associated with a variety of cellular activities Avi_7618 SM00382 ATPases associated with a variety of cellular activities Avi_7621 SM00419 helix_turn_helix, cAMP Regulatory protein Avi_7625 SM00382 ATPases associated with a variety of cellular activities Avi_7629 SM00729 Elongator protein 3, MiaB family, Radical SAM Avi_7633 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Avi_7634 SM00342 helix_turn_helix, arabinose operon control protein Avi_7635 SM00342 helix_turn_helix, arabinose operon control protein Avi_7641 SM00052 Putative diguanylate phosphodiesterase Avi_7641 SM00267 diguanylate cyclase Avi_7643 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Avi_7643 SM00091 PAS domain Avi_7643 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_7648 SM00382 ATPases associated with a variety of cellular activities Avi_7649 SM00829 Enoylreductase Avi_7655 SM00878 Biotin carboxylase C-terminal domain Avi_7657 SM00796 Allophanate hydrolase subunit 1 Avi_7658 SM00797 Allophanate hydrolase subunit 2 Avi_7665 SM00382 ATPases associated with a variety of cellular activities Avi_7667 SM00062 Bacterial periplasmic substrate-binding proteins Avi_7677 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_7681 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_7688 SM00342 helix_turn_helix, arabinose operon control protein Avi_7691 SM00878 Biotin carboxylase C-terminal domain Avi_7693 SM00422 helix_turn_helix, mercury resistance Avi_7693 SM00530 Helix-turn-helix XRE-family like proteins Avi_8001 SM00470 ParB-like nuclease domain Avi_8015 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen Avi_8016 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen Avi_8020 SM00642 Alpha-amylase domain Avi_8025 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Avi_8025 SM00091 PAS domain Avi_8025 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_8027 SM00411 bacterial (prokaryotic) histone like domain Avi_8029 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Avi_8066 SM00267 diguanylate cyclase Avi_8067 SM00530 Helix-turn-helix XRE-family like proteins Avi_8068 SM00052 Putative diguanylate phosphodiesterase Avi_8068 SM00267 diguanylate cyclase Avi_8074 SM00530 Helix-turn-helix XRE-family like proteins Avi_8083 SM00487 DEAD-like helicases superfamily Avi_8123 SM00411 bacterial (prokaryotic) histone like domain Avi_8126 SM00773 Proposed nucleic acid binding domain Avi_8137 SM00945 ProQ/FINO family Avi_8140 SM00421 helix_turn_helix, Lux Regulon Avi_8143 SM00344 helix_turn_helix ASNC type Avi_8145 SM00346 helix_turn_helix isocitrate lyase regulation Avi_8158 SM00382 ATPases associated with a variety of cellular activities Avi_8163 SM00346 helix_turn_helix isocitrate lyase regulation Avi_8172 SM00382 ATPases associated with a variety of cellular activities Avi_8178 SM00346 helix_turn_helix isocitrate lyase regulation Avi_8183 SM00382 ATPases associated with a variety of cellular activities Avi_8187 SM00829 Enoylreductase Avi_8200 SM00470 ParB-like nuclease domain Avi_8208 SM00795 Agrobacterium VirD5 protein Avi_8217 SM00448 cheY-homologous receiver domain Avi_8217 SM00862 Transcriptional regulatory protein, C terminal Avi_8250 SM00387 Histidine kinase-like ATPases Avi_8250 SM00388 His Kinase A (phosphoacceptor) domain Avi_8300 SM00421 helix_turn_helix, Lux Regulon Avi_8306 SM00382 ATPases associated with a variety of cellular activities Avi_8310 SM00382 ATPases associated with a variety of cellular activities Avi_8331 SM00382 ATPases associated with a variety of cellular activities Avi_9002 SM00470 ParB-like nuclease domain Avi_9004 SM00857 Resolvase, N terminal domain Avi_9007 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Avi_9007 SM00091 PAS domain Avi_9007 SM00911 HWE histidine kinase Avi_9028 SM00448 cheY-homologous receiver domain Avi_9041 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Avi_9041 SM00091 PAS domain Avi_9049 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_9053 SM00460 Transglutaminase/protease-like homologues Avi_9055 SM00530 Helix-turn-helix XRE-family like proteins Avi_9065 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_9065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_9068 SM00342 helix_turn_helix, arabinose operon control protein Avi_9076 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_9076 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_9077 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Avi_9077 SM00091 PAS domain Avi_9077 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_9083 SM00448 cheY-homologous receiver domain Avi_9083 SM00911 HWE histidine kinase Avi_9084 SM00342 helix_turn_helix, arabinose operon control protein Avi_9088 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Avi_9088 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_9098 SM00387 Histidine kinase-like ATPases Avi_9098 SM00388 His Kinase A (phosphoacceptor) domain Avi_9098 SM00448 cheY-homologous receiver domain Avi_9100 SM00138 Methyltransferase, chemotaxis proteins Avi_9103 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Avi_9103 SM00387 Histidine kinase-like ATPases Avi_9103 SM00388 His Kinase A (phosphoacceptor) domain Avi_9103 SM00448 cheY-homologous receiver domain Avi_9120 SM01329 Avi_9120 Avi_9125 SM00382 ATPases associated with a variety of cellular activities Avi_9131 SM00354 helix_turn _helix lactose operon repressor Avi_9140 SM00382 ATPases associated with a variety of cellular activities Avi_9142 SM00382 ATPases associated with a variety of cellular activities Avi_9145 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_9145 SM00866 Avi_9145 Avi_9162 SM00487 DEAD-like helicases superfamily Avi_9165 SM00470 ParB-like nuclease domain Avi_9178 SM00411 bacterial (prokaryotic) histone like domain Avi_9182 SM00773 Proposed nucleic acid binding domain Avi_9195 SM00421 helix_turn_helix, Lux Regulon Avi_9197 SM00382 ATPases associated with a variety of cellular activities Avi_9201 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_9217 SM00382 ATPases associated with a variety of cellular activities Avi_9219 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Avi_9219 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Avi_9223 SM00829 Enoylreductase Avi_9227 SM00347 helix_turn_helix multiple antibiotic resistance protein Avi_9237 SM00382 ATPases associated with a variety of cellular activities Avi_9241 SM00062 Bacterial periplasmic substrate-binding proteins Avi_9244 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_9244 SM00895 Avi_9244 Avi_9247 SM00893 Electron transfer flavoprotein domain Avi_9248 SM00893 Electron transfer flavoprotein domain Avi_9265 SM00382 ATPases associated with a variety of cellular activities Avi_9502 SM00470 ParB-like nuclease domain Avi_9505 SM00267 diguanylate cyclase Avi_9507 SM00953 Avi_9507 Avi_9517 SM00028 Tetratricopeptide repeats Avi_9533 SM00530 Helix-turn-helix XRE-family like proteins Avi_9535 SM00530 Helix-turn-helix XRE-family like proteins Avi_9541 SM00487 DEAD-like helicases superfamily Avi_9546 SM00357 Cold shock protein domain Avi_9549 SM00953 Avi_9549 Avi_9553 SM00470 ParB-like nuclease domain Avi_9559 SM00945 ProQ/FINO family Avi_9587 SM00773 Proposed nucleic acid binding domain Avi_9610 SM00382 ATPases associated with a variety of cellular activities Avi_9612 SM00345 helix_turn_helix gluconate operon transcriptional repressor Avi_9616 SM00382 ATPases associated with a variety of cellular activities Avi_9641 SM00823 Phosphopantetheine attachment site Avi_9643 SM00823 Phosphopantetheine attachment site Avi_9645 SM00530 Helix-turn-helix XRE-family like proteins Avi_9656 SM00382 ATPases associated with a variety of cellular activities Avi_9665 SM00421 helix_turn_helix, Lux Regulon Avi_9801 SM00470 ParB-like nuclease domain Avi_9804 SM00530 Helix-turn-helix XRE-family like proteins Avi_9827 SM00318 Staphylococcal nuclease homologues Avi_9833 SM00857 Resolvase, N terminal domain Avi_9836 SM00382 ATPases associated with a variety of cellular activities Avi_9841 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Avi_9846 SM00448 cheY-homologous receiver domain Avi_9846 SM00862 Transcriptional regulatory protein, C terminal Avi_9847 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Avi_9847 SM00387 Histidine kinase-like ATPases Avi_9863 SM00422 helix_turn_helix, mercury resistance Avi_9872 SM00530 Helix-turn-helix XRE-family like proteins Avi_9896 SM00470 ParB-like nuclease domain Avi_9903 SM00318 Staphylococcal nuclease homologues