ATC03_00005	SM00382	ATPases associated with a variety of cellular activities
ATC03_00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
ATC03_00010	SM00480	DNA polymerase III beta subunit
ATC03_00025	SM00387	Histidine kinase-like ATPases
ATC03_00025	SM00433	TopoisomeraseII
ATC03_00030	SM00434	DNA Topoisomerase IV
ATC03_00090	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC03_00090	SM00740	ATC03_00090
ATC03_00095	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC03_00110	SM00331	Sigma factor PP2C-like phosphatases
ATC03_00110	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATC03_00115	SM00240	Forkhead associated domain
ATC03_00120	SM00240	Forkhead associated domain
ATC03_00175	SM00382	ATPases associated with a variety of cellular activities
ATC03_00235	SM00872	Alpha mannosidase, middle domain
ATC03_00260	SM00421	helix_turn_helix, Lux Regulon
ATC03_00275	SM00829	Enoylreductase
ATC03_00280	SM01006	Siderophore biosynthesis protein domain
ATC03_00295	SM01006	Siderophore biosynthesis protein domain
ATC03_00365	SM00478	endonuclease III
ATC03_00390	SM00155	Phospholipase D. Active site motifs.
ATC03_00400	SM00477	DNA/RNA non-specific endonuclease
ATC03_00400	SM00892	DNA/RNA non-specific endonuclease
ATC03_00420	SM00849	Metallo-beta-lactamase superfamily
ATC03_00425	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_00425	SM00871	Bacterial transcription activator, effector binding domain
ATC03_00435	SM00974	ATC03_00435
ATC03_00485	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_00495	SM00257	Lysin motif
ATC03_00500	SM00421	helix_turn_helix, Lux Regulon
ATC03_00530	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_00570	SM00354	helix_turn _helix lactose operon repressor
ATC03_00595	SM00327	von Willebrand factor (vWF) type A domain
ATC03_00690	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_00720	SM01004	Delta-aminolevulinic acid dehydratase
ATC03_00740	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC03_00765	SM00240	Forkhead associated domain
ATC03_00770	SM00331	Sigma factor PP2C-like phosphatases
ATC03_00770	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATC03_00825	SM00450	Rhodanese Homology Domain
ATC03_00830	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_00845	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_00845	SM00895	ATC03_00845
ATC03_00910	SM00420	helix_turn_helix, Deoxyribose operon repressor
ATC03_00955	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_00960	SM00344	helix_turn_helix ASNC type
ATC03_00995	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_01035	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_01075	SM00014	Acid phosphatase homologues
ATC03_01080	SM01217	ATC03_01080
ATC03_01095	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_01095	SM00895	ATC03_01095
ATC03_01115	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_01175	SM01007	Class II Aldolase and Adducin N-terminal domain
ATC03_01210	SM00382	ATPases associated with a variety of cellular activities
ATC03_01215	SM00354	helix_turn _helix lactose operon repressor
ATC03_01220	SM00354	helix_turn _helix lactose operon repressor
ATC03_01225	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ATC03_01235	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_01250	SM00460	Transglutaminase/protease-like homologues
ATC03_01290	SM00354	helix_turn _helix lactose operon repressor
ATC03_01350	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ATC03_01395	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
ATC03_01430	SM00354	helix_turn _helix lactose operon repressor
ATC03_01435	SM00642	Alpha-amylase domain
ATC03_01455	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_01465	SM00382	ATPases associated with a variety of cellular activities
ATC03_01475	SM01260	ATC03_01475
ATC03_01485	SM00382	ATPases associated with a variety of cellular activities
ATC03_01525	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_01530	SM00862	Transcriptional regulatory protein, C terminal
ATC03_01570	SM00448	cheY-homologous receiver domain
ATC03_01570	SM00862	Transcriptional regulatory protein, C terminal
ATC03_01575	SM00387	Histidine kinase-like ATPases
ATC03_01575	SM00388	His Kinase A (phosphoacceptor) domain
ATC03_01630	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_01670	SM00855	Phosphoglycerate mutase family
ATC03_01695	SM00632	ATC03_01695
ATC03_01695	SM00642	Alpha-amylase domain
ATC03_01695	SM01066	Carbohydrate binding domain
ATC03_01710	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATC03_01715	SM01018	B12 binding domain
ATC03_01730	SM00382	ATPases associated with a variety of cellular activities
ATC03_01815	SM00354	helix_turn _helix lactose operon repressor
ATC03_01845	SM00422	helix_turn_helix, mercury resistance
ATC03_01850	SM00642	Alpha-amylase domain
ATC03_01870	SM00642	Alpha-amylase domain
ATC03_01885	SM00421	helix_turn_helix, Lux Regulon
ATC03_01900	SM00382	ATPases associated with a variety of cellular activities
ATC03_01985	SM00862	Transcriptional regulatory protein, C terminal
ATC03_01985	SM01043	Bacterial transcriptional activator domain
ATC03_02015	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_02085	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_02100	SM00226	Low molecular weight phosphatase family
ATC03_02110	SM00226	Low molecular weight phosphatase family
ATC03_02115	SM00226	Low molecular weight phosphatase family
ATC03_02155	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_02200	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ATC03_02230	SM00354	helix_turn _helix lactose operon repressor
ATC03_02235	SM01007	Class II Aldolase and Adducin N-terminal domain
ATC03_02260	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_02270	SM00420	helix_turn_helix, Deoxyribose operon repressor
ATC03_02335	SM00487	DEAD-like helicases superfamily
ATC03_02335	SM00490	helicase superfamily c-terminal domain
ATC03_02375	SM00382	ATPases associated with a variety of cellular activities
ATC03_02380	SM00062	Bacterial periplasmic substrate-binding proteins
ATC03_02500	SM00382	ATPases associated with a variety of cellular activities
ATC03_02590	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATC03_02620	SM00382	ATPases associated with a variety of cellular activities
ATC03_02640	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ATC03_02720	SM00421	helix_turn_helix, Lux Regulon
ATC03_02720	SM00448	cheY-homologous receiver domain
ATC03_02805	SM00635	Bacterial Ig-like domain 2
ATC03_02820	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC03_02840	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ATC03_02840	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ATC03_02845	SM00649	Ribosomal protein L11/L12
ATC03_02885	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_02910	SM00062	Bacterial periplasmic substrate-binding proteins
ATC03_02920	SM00382	ATPases associated with a variety of cellular activities
ATC03_02995	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_03055	SM00382	ATPases associated with a variety of cellular activities
ATC03_03105	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_03135	SM00829	Enoylreductase
ATC03_03160	SM00382	ATPases associated with a variety of cellular activities
ATC03_03215	SM00382	ATPases associated with a variety of cellular activities
ATC03_03230	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
ATC03_03230	SM00606	Cellulose Binding Domain Type IV
ATC03_03235	SM00448	cheY-homologous receiver domain
ATC03_03235	SM00862	Transcriptional regulatory protein, C terminal
ATC03_03240	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC03_03240	SM00387	Histidine kinase-like ATPases
ATC03_03240	SM00388	His Kinase A (phosphoacceptor) domain
ATC03_03250	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
ATC03_03250	SM00606	Cellulose Binding Domain Type IV
ATC03_03265	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_03340	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_03350	SM00354	helix_turn _helix lactose operon repressor
ATC03_03370	SM00382	ATPases associated with a variety of cellular activities
ATC03_03380	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC03_03410	SM00354	helix_turn _helix lactose operon repressor
ATC03_03415	SM01007	Class II Aldolase and Adducin N-terminal domain
ATC03_03425	SM00382	ATPases associated with a variety of cellular activities
ATC03_03455	SM00421	helix_turn_helix, Lux Regulon
ATC03_03455	SM00448	cheY-homologous receiver domain
ATC03_03495	SM00829	Enoylreductase
ATC03_03505	SM00776	ATC03_03505
ATC03_03510	SM00354	helix_turn _helix lactose operon repressor
ATC03_03520	SM00606	Cellulose Binding Domain Type IV
ATC03_03565	SM00828	Methyltransferase  in polyketide synthase (PKS) enzymes.
ATC03_03630	SM00354	helix_turn _helix lactose operon repressor
ATC03_03635	SM00382	ATPases associated with a variety of cellular activities
ATC03_03645	SM00382	ATPases associated with a variety of cellular activities
ATC03_03710	SM00354	helix_turn _helix lactose operon repressor
ATC03_03755	SM00421	helix_turn_helix, Lux Regulon
ATC03_03755	SM00448	cheY-homologous receiver domain
ATC03_03760	SM00387	Histidine kinase-like ATPases
ATC03_03770	SM00382	ATPases associated with a variety of cellular activities
ATC03_03815	SM00710	Parallel beta-helix repeats
ATC03_03840	SM00882	Coenzyme A transferase
ATC03_03875	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_03890	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_03910	SM00460	Transglutaminase/protease-like homologues
ATC03_03920	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_03990	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_04070	SM00382	ATPases associated with a variety of cellular activities
ATC03_04075	SM00710	Parallel beta-helix repeats
ATC03_04105	SM00354	helix_turn _helix lactose operon repressor
ATC03_04150	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_04195	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_04225	SM00382	ATPases associated with a variety of cellular activities
ATC03_04230	SM00382	ATPases associated with a variety of cellular activities
ATC03_04250	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_04275	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATC03_04320	SM01022	ATC03_04320
ATC03_04390	SM00421	helix_turn_helix, Lux Regulon
ATC03_04390	SM00448	cheY-homologous receiver domain
ATC03_04420	SM01059	Chloramphenicol acetyltransferase
ATC03_04435	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC03_04435	SM00387	Histidine kinase-like ATPases
ATC03_04435	SM00388	His Kinase A (phosphoacceptor) domain
ATC03_04440	SM00448	cheY-homologous receiver domain
ATC03_04440	SM00862	Transcriptional regulatory protein, C terminal
ATC03_04485	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_04520	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_04525	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ATC03_04525	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ATC03_04535	SM00640	Glycosyl hydrolases family 32
ATC03_04555	SM00640	Glycosyl hydrolases family 32
ATC03_04565	SM00354	helix_turn _helix lactose operon repressor
ATC03_04580	SM00382	ATPases associated with a variety of cellular activities
ATC03_04585	SM00640	Glycosyl hydrolases family 32
ATC03_04605	SM00354	helix_turn _helix lactose operon repressor
ATC03_04610	SM00640	Glycosyl hydrolases family 32
ATC03_04615	SM00640	Glycosyl hydrolases family 32
ATC03_04630	SM00382	ATPases associated with a variety of cellular activities
ATC03_04630	SM01086	C-terminal, D2-small domain, of ClpB protein
ATC03_04635	SM00849	Metallo-beta-lactamase superfamily
ATC03_04725	SM00421	helix_turn_helix, Lux Regulon
ATC03_04725	SM00448	cheY-homologous receiver domain
ATC03_04750	SM00710	Parallel beta-helix repeats
ATC03_04760	SM00776	ATC03_04760
ATC03_04765	SM00354	helix_turn _helix lactose operon repressor
ATC03_04775	SM00060	Fibronectin type 3 domain
ATC03_04855	SM00855	Phosphoglycerate mutase family
ATC03_04915	SM00849	Metallo-beta-lactamase superfamily
ATC03_04945	SM00382	ATPases associated with a variety of cellular activities
ATC03_04965	SM00354	helix_turn _helix lactose operon repressor
ATC03_04980	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATC03_04995	SM00354	helix_turn _helix lactose operon repressor
ATC03_05045	SM00812	Alpha-L-fucosidase
ATC03_05050	SM00100	Cyclic nucleotide-monophosphate binding domain
ATC03_05065	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_05080	SM00382	ATPases associated with a variety of cellular activities
ATC03_05100	SM00354	helix_turn _helix lactose operon repressor
ATC03_05155	SM00354	helix_turn _helix lactose operon repressor
ATC03_05175	SM00813	Alpha-L-arabinofuranosidase C-terminus
ATC03_05185	SM01217	ATC03_05185
ATC03_05190	SM01217	ATC03_05190
ATC03_05205	SM00450	Rhodanese Homology Domain
ATC03_05210	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC03_05235	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
ATC03_05240	SM01092	CO dehydrogenase flavoprotein C-terminal domain
ATC03_05245	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_05250	SM00919	Malic enzyme, NAD binding domain
ATC03_05250	SM01274	ATC03_05250
ATC03_05295	SM00095	Transthyretin
ATC03_05310	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_05325	SM00382	ATPases associated with a variety of cellular activities
ATC03_05355	SM00822	ATC03_05355
ATC03_05380	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_05395	SM00382	ATPases associated with a variety of cellular activities
ATC03_05400	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATC03_05400	SM00493	ATC03_05400
ATC03_05425	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATC03_05435	SM00387	Histidine kinase-like ATPases
ATC03_05435	SM00388	His Kinase A (phosphoacceptor) domain
ATC03_05440	SM00267	diguanylate cyclase
ATC03_05455	SM00448	cheY-homologous receiver domain
ATC03_05455	SM00862	Transcriptional regulatory protein, C terminal
ATC03_05470	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_05480	SM01119	ATC03_05480
ATC03_05510	SM00382	ATPases associated with a variety of cellular activities
ATC03_05515	SM00382	ATPases associated with a variety of cellular activities
ATC03_05540	SM00382	ATPases associated with a variety of cellular activities
ATC03_05545	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
ATC03_05545	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
ATC03_05575	SM00226	Low molecular weight phosphatase family
ATC03_05650	SM00984	UDP binding domain
ATC03_05760	SM00823	Phosphopantetheine attachment site
ATC03_05760	SM01294	ATC03_05760
ATC03_05775	SM00740	ATC03_05775
ATC03_05810	SM00881	CoA binding domain
ATC03_05830	SM00798	AICARFT/IMPCHase bienzyme
ATC03_05830	SM00851	MGS-like domain
ATC03_05835	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ATC03_05845	SM00382	ATPases associated with a variety of cellular activities
ATC03_05875	SM00382	ATPases associated with a variety of cellular activities
ATC03_05890	SM00421	helix_turn_helix, Lux Regulon
ATC03_05890	SM00448	cheY-homologous receiver domain
ATC03_05910	SM01329	ATC03_05910
ATC03_05980	SM00420	helix_turn_helix, Deoxyribose operon repressor
ATC03_05980	SM01134	ATC03_05980
ATC03_06090	SM00420	helix_turn_helix, Deoxyribose operon repressor
ATC03_06090	SM01134	ATC03_06090
ATC03_06130	SM00421	helix_turn_helix, Lux Regulon
ATC03_06135	SM00495	Chitin-binding domain type 3
ATC03_06135	SM00636	ATC03_06135
ATC03_06140	SM00495	Chitin-binding domain type 3
ATC03_06140	SM00636	ATC03_06140
ATC03_06145	SM00382	ATPases associated with a variety of cellular activities
ATC03_06165	SM00855	Phosphoglycerate mutase family
ATC03_06175	SM00862	Transcriptional regulatory protein, C terminal
ATC03_06200	SM00855	Phosphoglycerate mutase family
ATC03_06210	SM00387	Histidine kinase-like ATPases
ATC03_06210	SM00388	His Kinase A (phosphoacceptor) domain
ATC03_06215	SM00448	cheY-homologous receiver domain
ATC03_06215	SM00862	Transcriptional regulatory protein, C terminal
ATC03_06225	SM01058	CarD-like/TRCF domain
ATC03_06235	SM00840	ATC03_06235
ATC03_06240	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATC03_06250	SM00382	ATPases associated with a variety of cellular activities
ATC03_06290	SM00357	Cold shock protein domain
ATC03_06310	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC03_06310	SM00387	Histidine kinase-like ATPases
ATC03_06310	SM00388	His Kinase A (phosphoacceptor) domain
ATC03_06315	SM00448	cheY-homologous receiver domain
ATC03_06315	SM00862	Transcriptional regulatory protein, C terminal
ATC03_06335	SM00487	DEAD-like helicases superfamily
ATC03_06335	SM00490	helicase superfamily c-terminal domain
ATC03_06350	SM00357	Cold shock protein domain
ATC03_06370	SM00529	Helix-turn-helix diphteria tox regulatory element
ATC03_06380	SM00507	HNH nucleases
ATC03_06415	SM00344	helix_turn_helix ASNC type
ATC03_06420	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ATC03_06420	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ATC03_06425	SM00450	Rhodanese Homology Domain
ATC03_06440	SM00834	Putative regulatory protein
ATC03_06545	SM00382	ATPases associated with a variety of cellular activities
ATC03_06545	SM00487	DEAD-like helicases superfamily
ATC03_06545	SM00490	helicase superfamily c-terminal domain
ATC03_06545	SM00847	Helicase associated domain (HA2)  Add an annotation
ATC03_06560	SM00506	Appr-1"-p processing enzyme
ATC03_06595	SM00271	DnaJ molecular chaperone homology domain
ATC03_06615	SM00382	ATPases associated with a variety of cellular activities
ATC03_06625	SM00382	ATPases associated with a variety of cellular activities
ATC03_06625	SM01043	Bacterial transcriptional activator domain
ATC03_06650	SM00382	ATPases associated with a variety of cellular activities
ATC03_06665	SM00881	CoA binding domain
ATC03_06690	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_06695	SM00829	Enoylreductase
ATC03_06725	SM00829	Enoylreductase
ATC03_06740	SM00650	Ribosomal RNA adenine dimethylases
ATC03_06750	SM00382	ATPases associated with a variety of cellular activities
ATC03_06760	SM00382	ATPases associated with a variety of cellular activities
ATC03_06760	SM00930	ATC03_06760
ATC03_06775	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_06790	SM01400	ATC03_06790
ATC03_06820	SM01350	ATC03_06820
ATC03_06835	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_06855	SM00829	Enoylreductase
ATC03_06880	SM00487	DEAD-like helicases superfamily
ATC03_06880	SM00490	helicase superfamily c-terminal domain
ATC03_06880	SM00982	ATC03_06880
ATC03_06880	SM01058	CarD-like/TRCF domain
ATC03_06910	SM01192	ATC03_06910
ATC03_06910	SM01193	ATC03_06910
ATC03_06940	SM00831	Cation transporter/ATPase, N-terminus
ATC03_06985	SM00382	ATPases associated with a variety of cellular activities
ATC03_07045	SM00670	Large family of predicted nucleotide-binding domains
ATC03_07060	SM00947	Carbonic anhydrase
ATC03_07185	SM00563	Phosphate acyltransferases
ATC03_07200	SM00382	ATPases associated with a variety of cellular activities
ATC03_07215	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATC03_07215	SM01232	ATC03_07215
ATC03_07230	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATC03_07230	SM01232	ATC03_07230
ATC03_07260	SM00327	von Willebrand factor (vWF) type A domain
ATC03_07335	SM00382	ATPases associated with a variety of cellular activities
ATC03_07440	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC03_07440	SM00924	MgtE intracellular N domain
ATC03_07455	SM01011	Aminopeptidase P, N-terminal domain
ATC03_07465	SM00481	DNA polymerase alpha chain like domain
ATC03_07470	SM00487	DEAD-like helicases superfamily
ATC03_07470	SM00490	helicase superfamily c-terminal domain
ATC03_07520	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATC03_07530	SM00636	ATC03_07530
ATC03_07615	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATC03_07645	SM00382	ATPases associated with a variety of cellular activities
ATC03_07665	SM00382	ATPases associated with a variety of cellular activities
ATC03_07760	SM00354	helix_turn _helix lactose operon repressor
ATC03_07815	SM00937	ATC03_07815
ATC03_07835	SM00382	ATPases associated with a variety of cellular activities
ATC03_07975	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATC03_07975	SM00475	5'-3' exonuclease
ATC03_07995	SM00382	ATPases associated with a variety of cellular activities
ATC03_08115	SM01329	ATC03_08115
ATC03_08170	SM00849	Metallo-beta-lactamase superfamily
ATC03_08175	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ATC03_08200	SM00331	Sigma factor PP2C-like phosphatases
ATC03_08200	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATC03_08210	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC03_08220	SM00060	Fibronectin type 3 domain
ATC03_08235	SM00460	Transglutaminase/protease-like homologues
ATC03_08260	SM00563	Phosphate acyltransferases
ATC03_08280	SM00327	von Willebrand factor (vWF) type A domain
ATC03_08300	SM00487	DEAD-like helicases superfamily
ATC03_08300	SM00490	helicase superfamily c-terminal domain
ATC03_08320	SM00460	Transglutaminase/protease-like homologues
ATC03_08335	SM00358	Double-stranded RNA binding motif
ATC03_08335	SM00535	Ribonuclease III family
ATC03_08340	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATC03_08340	SM01232	ATC03_08340
ATC03_08350	SM00968	SMC proteins Flexible Hinge Domain
ATC03_08355	SM00642	Alpha-amylase domain
ATC03_08365	SM00382	ATPases associated with a variety of cellular activities
ATC03_08365	SM00962	SRP54-type protein, GTPase domain
ATC03_08365	SM00963	SRP54-type protein, helical bundle domain
ATC03_08375	SM00382	ATPases associated with a variety of cellular activities
ATC03_08375	SM00962	SRP54-type protein, GTPase domain
ATC03_08375	SM00963	SRP54-type protein, helical bundle domain
ATC03_08425	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
ATC03_08435	SM00862	Transcriptional regulatory protein, C terminal
ATC03_08490	SM00382	ATPases associated with a variety of cellular activities
ATC03_08580	SM00642	Alpha-amylase domain
ATC03_08585	SM00642	Alpha-amylase domain
ATC03_08625	SM00292	breast cancer carboxy-terminal domain
ATC03_08625	SM00532	Ligase N family
ATC03_08645	SM00845	GatB domain
ATC03_08670	SM00382	ATPases associated with a variety of cellular activities
ATC03_08695	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_08700	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_08710	SM01040	BRO family, N-terminal domain
ATC03_08995	SM00479	ATC03_08995
ATC03_09035	SM00382	ATPases associated with a variety of cellular activities
ATC03_09085	SM00421	helix_turn_helix, Lux Regulon
ATC03_09085	SM00448	cheY-homologous receiver domain
ATC03_09100	SM00382	ATPases associated with a variety of cellular activities
ATC03_09125	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATC03_09125	SM01232	ATC03_09125
ATC03_09145	SM00421	helix_turn_helix, Lux Regulon
ATC03_09145	SM00448	cheY-homologous receiver domain
ATC03_09190	SM00382	ATPases associated with a variety of cellular activities
ATC03_09195	SM00382	ATPases associated with a variety of cellular activities
ATC03_09195	SM00994	ClpX C4-type zinc finger
ATC03_09195	SM01086	C-terminal, D2-small domain, of ClpB protein
ATC03_09240	SM00861	Transketolase, pyrimidine binding domain
ATC03_09255	SM00341	Helicase and RNase D C-terminal
ATC03_09255	SM00474	3'-5' exonuclease
ATC03_09275	SM00450	Rhodanese Homology Domain
ATC03_09320	SM00710	Parallel beta-helix repeats
ATC03_09325	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATC03_09340	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_09375	SM00382	ATPases associated with a variety of cellular activities
ATC03_09380	SM01323	ATC03_09380
ATC03_09395	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC03_09395	SM00954	Region found in RelA / SpoT proteins
ATC03_09415	SM00382	ATPases associated with a variety of cellular activities
ATC03_09420	SM00363	S4 RNA-binding domain
ATC03_09420	SM01390	ATC03_09420
ATC03_09430	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATC03_09435	SM00732	Likely ribonuclease with RNase H fold.
ATC03_09470	SM00841	Elongation factor P, C-terminal
ATC03_09470	SM01185	ATC03_09470
ATC03_09510	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ATC03_09515	SM00851	MGS-like domain
ATC03_09515	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ATC03_09520	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ATC03_09525	SM00072	Guanylate kinase homologues.
ATC03_09530	SM01409	ATC03_09530
ATC03_09645	SM00448	cheY-homologous receiver domain
ATC03_09645	SM01012	ATC03_09645
ATC03_09650	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATC03_09650	SM00475	5'-3' exonuclease
ATC03_09650	SM00482	DNA polymerase A domain
ATC03_09660	SM00316	Ribosomal protein S1-like RNA-binding domain
ATC03_09670	SM00487	DEAD-like helicases superfamily
ATC03_09670	SM00490	helicase superfamily c-terminal domain
ATC03_09680	SM00465	GIY-YIG type nucleases (URI domain)
ATC03_09700	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ATC03_09750	SM00861	Transketolase, pyrimidine binding domain
ATC03_09785	SM00382	ATPases associated with a variety of cellular activities
ATC03_09815	SM00382	ATPases associated with a variety of cellular activities
ATC03_09860	SM00562	ATC03_09860
ATC03_09865	SM00756	ATC03_09865
ATC03_09940	SM00344	helix_turn_helix ASNC type
ATC03_09960	SM00867	YceI-like domain 
ATC03_09970	SM00382	ATPases associated with a variety of cellular activities
ATC03_09990	SM00822	ATC03_09990
ATC03_10010	SM00382	ATPases associated with a variety of cellular activities
ATC03_10020	SM00479	ATC03_10020
ATC03_10035	SM00855	Phosphoglycerate mutase family
ATC03_10060	SM00487	DEAD-like helicases superfamily
ATC03_10070	SM00344	helix_turn_helix ASNC type
ATC03_10090	SM00481	DNA polymerase alpha chain like domain
ATC03_10160	SM00487	DEAD-like helicases superfamily
ATC03_10160	SM00490	helicase superfamily c-terminal domain
ATC03_10160	SM01142	ATC03_10160
ATC03_10180	SM00244	prohibitin homologues
ATC03_10200	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_10210	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_10215	SM00226	Low molecular weight phosphatase family
ATC03_10220	SM00226	Low molecular weight phosphatase family
ATC03_10235	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_10260	SM00822	ATC03_10260
ATC03_10270	SM01120	ATC03_10270
ATC03_10355	SM00434	DNA Topoisomerase IV
ATC03_10360	SM00387	Histidine kinase-like ATPases
ATC03_10360	SM00433	TopoisomeraseII
ATC03_10415	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC03_10430	SM01230	ATC03_10430
ATC03_10440	SM01230	ATC03_10440
ATC03_10500	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
ATC03_10515	SM00825	Beta-ketoacyl synthase
ATC03_10530	SM00482	DNA polymerase A domain
ATC03_10545	SM00244	prohibitin homologues
ATC03_10550	SM00867	YceI-like domain 
ATC03_10675	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_10685	SM00882	Coenzyme A transferase
ATC03_10690	SM00882	Coenzyme A transferase
ATC03_10720	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_10765	SM00421	helix_turn_helix, Lux Regulon
ATC03_10775	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ATC03_10800	SM00382	ATPases associated with a variety of cellular activities
ATC03_10805	SM00382	ATPases associated with a variety of cellular activities
ATC03_10825	SM01217	ATC03_10825
ATC03_10850	SM00354	helix_turn _helix lactose operon repressor
ATC03_10860	SM00327	von Willebrand factor (vWF) type A domain
ATC03_10890	SM00835	Cupin
ATC03_10895	SM00829	Enoylreductase
ATC03_10925	SM00421	helix_turn_helix, Lux Regulon
ATC03_10965	SM00421	helix_turn_helix, Lux Regulon
ATC03_10970	SM00421	helix_turn_helix, Lux Regulon
ATC03_10980	SM00382	ATPases associated with a variety of cellular activities
ATC03_11045	SM01217	ATC03_11045
ATC03_11075	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATC03_11095	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_11200	SM00382	ATPases associated with a variety of cellular activities
ATC03_11205	SM00382	ATPases associated with a variety of cellular activities
ATC03_11225	SM00400	zinc finger
ATC03_11225	SM00493	ATC03_11225
ATC03_11230	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC03_11285	SM00917	LeuA allosteric (dimerisation) domain
ATC03_11295	SM00382	ATPases associated with a variety of cellular activities
ATC03_11300	SM00421	helix_turn_helix, Lux Regulon
ATC03_11300	SM00448	cheY-homologous receiver domain
ATC03_11315	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC03_11315	SM01091	Transporter associated domain
ATC03_11340	SM00271	DnaJ molecular chaperone homology domain
ATC03_11360	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC03_11370	SM00838	Elongation factor G C-terminus
ATC03_11375	SM00387	Histidine kinase-like ATPases
ATC03_11380	SM00421	helix_turn_helix, Lux Regulon
ATC03_11380	SM00448	cheY-homologous receiver domain
ATC03_11395	SM00849	Metallo-beta-lactamase superfamily
ATC03_11415	SM00382	ATPases associated with a variety of cellular activities
ATC03_11465	SM00382	ATPases associated with a variety of cellular activities
ATC03_11495	SM00481	DNA polymerase alpha chain like domain
ATC03_11530	SM00864	Tubulin/FtsZ family, GTPase domain
ATC03_11530	SM00865	Tubulin/FtsZ family, C-terminal domain
ATC03_11610	SM00257	Lysin motif
ATC03_11615	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC03_11615	SM00740	ATC03_11615
ATC03_11625	SM00563	Phosphate acyltransferases
ATC03_11650	SM00878	Biotin carboxylase C-terminal domain
ATC03_11660	SM00422	helix_turn_helix, mercury resistance
ATC03_11665	SM00422	helix_turn_helix, mercury resistance
ATC03_11670	SM00240	Forkhead associated domain
ATC03_11690	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_11730	SM00363	S4 RNA-binding domain
ATC03_11750	SM00849	Metallo-beta-lactamase superfamily
ATC03_11755	SM00954	Region found in RelA / SpoT proteins
ATC03_11760	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_11780	SM00563	Phosphate acyltransferases
ATC03_11810	SM00903	Flavin reductase like domain
ATC03_11855	SM00344	helix_turn_helix ASNC type
ATC03_11875	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC03_11875	SM00387	Histidine kinase-like ATPases
ATC03_11875	SM00388	His Kinase A (phosphoacceptor) domain
ATC03_11880	SM00448	cheY-homologous receiver domain
ATC03_11880	SM00862	Transcriptional regulatory protein, C terminal
ATC03_11905	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_11915	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
ATC03_11920	SM00996	S-adenosyl-L-homocysteine hydrolase
ATC03_11920	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
ATC03_11925	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATC03_11925	SM00267	diguanylate cyclase
ATC03_11930	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_12005	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_12040	SM00422	helix_turn_helix, mercury resistance
ATC03_12175	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_12220	SM00942	Primase C terminal 1 (PriCT-1)
ATC03_12220	SM00943	Bifunctional DNA primase/polymerase, N-terminal
ATC03_12235	SM00470	ParB-like nuclease domain
ATC03_12325	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_12335	SM00382	ATPases associated with a variety of cellular activities
ATC03_12350	SM00363	S4 RNA-binding domain
ATC03_12395	SM00363	S4 RNA-binding domain
ATC03_12470	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATC03_12475	SM00382	ATPases associated with a variety of cellular activities
ATC03_12510	SM00873	B3/4 domain
ATC03_12510	SM00874	tRNA synthetase B5 domain
ATC03_12510	SM00896	Ferredoxin-fold anticodon binding domain
ATC03_12530	SM00062	Bacterial periplasmic substrate-binding proteins
ATC03_12535	SM00382	ATPases associated with a variety of cellular activities
ATC03_12540	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATC03_12565	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATC03_12565	SM01232	ATC03_12565
ATC03_12570	SM00487	DEAD-like helicases superfamily
ATC03_12570	SM00490	helicase superfamily c-terminal domain
ATC03_12605	SM00257	Lysin motif
ATC03_12650	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC03_12660	SM00382	ATPases associated with a variety of cellular activities
ATC03_12670	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_12685	SM00843	ATC03_12685
ATC03_12710	SM00849	Metallo-beta-lactamase superfamily
ATC03_12715	SM01130	ATC03_12715
ATC03_12770	SM00855	Phosphoglycerate mutase family
ATC03_12800	SM00878	Biotin carboxylase C-terminal domain
ATC03_12830	SM00849	Metallo-beta-lactamase superfamily
ATC03_12870	SM00861	Transketolase, pyrimidine binding domain
ATC03_12880	SM00344	helix_turn_helix ASNC type
ATC03_12890	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_12905	SM00316	Ribosomal protein S1-like RNA-binding domain
ATC03_12905	SM00322	K homology RNA-binding domain
ATC03_12920	SM00382	ATPases associated with a variety of cellular activities
ATC03_13015	SM00986	Uracil DNA glycosylase superfamily
ATC03_13015	SM00987	UreE urease accessory protein, C-terminal domain 
ATC03_13020	SM01387	ATC03_13020
ATC03_13085	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_13085	SM00478	endonuclease III
ATC03_13085	SM01009	AlkA N-terminal domain
ATC03_13090	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_13090	SM00895	ATC03_13090
ATC03_13100	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATC03_13115	SM00382	ATPases associated with a variety of cellular activities
ATC03_13120	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_13120	SM00895	ATC03_13120
ATC03_13125	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATC03_13175	SM00487	DEAD-like helicases superfamily
ATC03_13175	SM00490	helicase superfamily c-terminal domain
ATC03_13225	SM01133	ATC03_13225
ATC03_13245	SM00904	Riboflavin kinase
ATC03_13280	SM00478	endonuclease III
ATC03_13280	SM00525	ATC03_13280
ATC03_13330	SM00882	Coenzyme A transferase
ATC03_13335	SM00882	Coenzyme A transferase
ATC03_13355	SM00421	helix_turn_helix, Lux Regulon
ATC03_13355	SM00448	cheY-homologous receiver domain
ATC03_13360	SM00387	Histidine kinase-like ATPases
ATC03_13365	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATC03_13380	SM00563	Phosphate acyltransferases
ATC03_13415	SM00382	ATPases associated with a variety of cellular activities
ATC03_13425	SM00382	ATPases associated with a variety of cellular activities
ATC03_13450	SM00060	Fibronectin type 3 domain
ATC03_13455	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC03_13460	SM00331	Sigma factor PP2C-like phosphatases
ATC03_13460	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATC03_13470	SM00344	helix_turn_helix ASNC type
ATC03_13515	SM00382	ATPases associated with a variety of cellular activities
ATC03_13595	SM00937	ATC03_13595
ATC03_13600	SM00357	Cold shock protein domain
ATC03_13600	SM00382	ATPases associated with a variety of cellular activities
ATC03_13600	SM00959	Rho termination factor, N-terminal domain
ATC03_13630	SM00836	DALR anticodon binding domain
ATC03_13630	SM01016	Arginyl tRNA synthetase N terminal dom
ATC03_13690	SM00382	ATPases associated with a variety of cellular activities
ATC03_13725	SM00986	Uracil DNA glycosylase superfamily
ATC03_13725	SM00987	UreE urease accessory protein, C-terminal domain 
ATC03_13775	SM00421	helix_turn_helix, Lux Regulon
ATC03_13775	SM00448	cheY-homologous receiver domain
ATC03_13805	SM00062	Bacterial periplasmic substrate-binding proteins
ATC03_13805	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ATC03_13815	SM00382	ATPases associated with a variety of cellular activities
ATC03_13845	SM01091	Transporter associated domain
ATC03_13850	SM01240	ATC03_13850
ATC03_13855	SM00861	Transketolase, pyrimidine binding domain
ATC03_13900	SM00387	Histidine kinase-like ATPases
ATC03_13900	SM00911	HWE histidine kinase
ATC03_13930	SM00957	SecA DEAD-like domain
ATC03_13930	SM00958	SecA preprotein cross-linking domain
ATC03_13945	SM00909	Sporulation and spore germination
ATC03_13955	SM00448	cheY-homologous receiver domain
ATC03_13955	SM00862	Transcriptional regulatory protein, C terminal
ATC03_14000	SM00996	S-adenosyl-L-homocysteine hydrolase
ATC03_14000	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
ATC03_14040	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_14235	SM00382	ATPases associated with a variety of cellular activities
ATC03_14260	SM01001	AIR carboxylase
ATC03_14310	SM00448	cheY-homologous receiver domain
ATC03_14325	SM00878	Biotin carboxylase C-terminal domain
ATC03_14370	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
ATC03_14390	SM00382	ATPases associated with a variety of cellular activities
ATC03_14430	SM00327	von Willebrand factor (vWF) type A domain
ATC03_14435	SM00327	von Willebrand factor (vWF) type A domain
ATC03_14540	SM00382	ATPases associated with a variety of cellular activities
ATC03_14560	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_14590	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ATC03_14645	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_14645	SM00895	ATC03_14645
ATC03_14690	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_14760	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_14800	SM00354	helix_turn _helix lactose operon repressor
ATC03_14805	SM00710	Parallel beta-helix repeats
ATC03_14810	SM00060	Fibronectin type 3 domain
ATC03_14830	SM00382	ATPases associated with a variety of cellular activities
ATC03_14845	SM00448	cheY-homologous receiver domain
ATC03_14845	SM00862	Transcriptional regulatory protein, C terminal
ATC03_14850	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC03_14850	SM00387	Histidine kinase-like ATPases
ATC03_14850	SM00388	His Kinase A (phosphoacceptor) domain
ATC03_14870	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATC03_14890	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_14890	SM00895	ATC03_14890
ATC03_14905	SM00635	Bacterial Ig-like domain 2
ATC03_14915	SM00421	helix_turn_helix, Lux Regulon
ATC03_14945	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ATC03_14945	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ATC03_14945	SM00493	ATC03_14945
ATC03_15035	SM01240	ATC03_15035
ATC03_15040	SM00382	ATPases associated with a variety of cellular activities
ATC03_15050	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC03_15050	SM01240	ATC03_15050
ATC03_15065	SM00382	ATPases associated with a variety of cellular activities
ATC03_15070	SM00382	ATPases associated with a variety of cellular activities
ATC03_15085	SM00883	Chaperonin 10 Kd subunit
ATC03_15130	SM01005	Alanine racemase, C-terminal domain
ATC03_15175	SM00662	RNA polymerases D
ATC03_15260	SM01374	ATC03_15260
ATC03_15280	SM00322	K homology RNA-binding domain
ATC03_15295	SM01382	ATC03_15295
ATC03_15295	SM01383	ATC03_15295
ATC03_15315	SM01403	ATC03_15315
ATC03_15335	SM00838	Elongation factor G C-terminus
ATC03_15335	SM00889	Elongation factor G, domain IV
ATC03_15420	SM00240	Forkhead associated domain
ATC03_15420	SM00382	ATPases associated with a variety of cellular activities
ATC03_15445	SM00842	Cell division protein FtsA
ATC03_15480	SM00382	ATPases associated with a variety of cellular activities
ATC03_15485	SM00382	ATPases associated with a variety of cellular activities
ATC03_15490	SM00663	RNA polymerase I subunit A N-terminus
ATC03_15515	SM00797	Allophanate hydrolase subunit 2
ATC03_15520	SM00796	Allophanate hydrolase subunit 1
ATC03_15535	SM00731	SprT homologues.
ATC03_15565	SM00487	DEAD-like helicases superfamily
ATC03_15565	SM00490	helicase superfamily c-terminal domain
ATC03_15595	SM00354	helix_turn _helix lactose operon repressor
ATC03_15655	SM01130	ATC03_15655
ATC03_15685	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_15685	SM00895	ATC03_15685
ATC03_15690	SM01011	Aminopeptidase P, N-terminal domain
ATC03_15700	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_15735	SM00382	ATPases associated with a variety of cellular activities
ATC03_15760	SM00382	ATPases associated with a variety of cellular activities
ATC03_15760	SM01086	C-terminal, D2-small domain, of ClpB protein
ATC03_15770	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_15785	SM00631	ATC03_15785
ATC03_15790	SM00155	Phospholipase D. Active site motifs.
ATC03_15835	SM00905	Dihydroneopterin aldolase
ATC03_15850	SM00382	ATPases associated with a variety of cellular activities
ATC03_15920	SM00421	helix_turn_helix, Lux Regulon
ATC03_15920	SM00448	cheY-homologous receiver domain
ATC03_15925	SM00387	Histidine kinase-like ATPases
ATC03_15940	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_15975	SM00481	DNA polymerase alpha chain like domain
ATC03_15980	SM00829	Enoylreductase
ATC03_16015	SM00382	ATPases associated with a variety of cellular activities
ATC03_16045	SM00354	helix_turn _helix lactose operon repressor
ATC03_16090	SM00382	ATPases associated with a variety of cellular activities
ATC03_16095	SM00341	Helicase and RNase D C-terminal
ATC03_16095	SM00487	DEAD-like helicases superfamily
ATC03_16095	SM00490	helicase superfamily c-terminal domain
ATC03_16095	SM00956	ATC03_16095
ATC03_16125	SM00487	DEAD-like helicases superfamily
ATC03_16125	SM00490	helicase superfamily c-terminal domain
ATC03_16175	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_16185	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_16210	SM00357	Cold shock protein domain
ATC03_16230	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ATC03_16250	SM00357	Cold shock protein domain
ATC03_16300	SM00382	ATPases associated with a variety of cellular activities
ATC03_16320	SM00822	ATC03_16320
ATC03_16390	SM00382	ATPases associated with a variety of cellular activities
ATC03_16395	SM00382	ATPases associated with a variety of cellular activities
ATC03_16405	SM00822	ATC03_16405
ATC03_16410	SM00829	Enoylreductase
ATC03_16420	SM00822	ATC03_16420
ATC03_16435	SM00421	helix_turn_helix, Lux Regulon
ATC03_16445	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_16455	SM00487	DEAD-like helicases superfamily
ATC03_16455	SM00490	helicase superfamily c-terminal domain
ATC03_16465	SM00060	Fibronectin type 3 domain
ATC03_16475	SM00420	helix_turn_helix, Deoxyribose operon repressor
ATC03_16475	SM01134	ATC03_16475
ATC03_16580	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_16610	SM00060	Fibronectin type 3 domain
ATC03_16635	SM00487	DEAD-like helicases superfamily
ATC03_16660	SM00487	DEAD-like helicases superfamily
ATC03_16660	SM00490	helicase superfamily c-terminal domain
ATC03_16840	SM00382	ATPases associated with a variety of cellular activities
ATC03_16880	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ATC03_16925	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_16945	SM00460	Transglutaminase/protease-like homologues
ATC03_16985	SM00382	ATPases associated with a variety of cellular activities
ATC03_17065	SM00382	ATPases associated with a variety of cellular activities
ATC03_17095	SM00450	Rhodanese Homology Domain
ATC03_17240	SM00487	DEAD-like helicases superfamily
ATC03_17240	SM00490	helicase superfamily c-terminal domain
ATC03_17300	SM00458	Ricin-type beta-trefoil
ATC03_17330	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ATC03_17350	SM00382	ATPases associated with a variety of cellular activities
ATC03_17395	SM00507	HNH nucleases
ATC03_17405	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_17420	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_17460	SM00852	Probable molybdopterin binding domain
ATC03_17510	SM00852	Probable molybdopterin binding domain
ATC03_17530	SM00382	ATPases associated with a variety of cellular activities
ATC03_17580	SM00382	ATPases associated with a variety of cellular activities
ATC03_17585	SM00382	ATPases associated with a variety of cellular activities
ATC03_17605	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_17625	SM00422	helix_turn_helix, mercury resistance
ATC03_17680	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_17715	SM00382	ATPases associated with a variety of cellular activities
ATC03_17740	SM01209	ATC03_17740
ATC03_17740	SM01210	ATC03_17740
ATC03_17800	SM01211	ATC03_17800
ATC03_17880	SM00830	Chorismate mutase type II
ATC03_17895	SM00060	Fibronectin type 3 domain
ATC03_17905	SM00382	ATPases associated with a variety of cellular activities
ATC03_17910	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_17920	SM00886	Stress responsive A/B Barrel Domain
ATC03_17935	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_17965	SM00387	Histidine kinase-like ATPases
ATC03_17970	SM00448	cheY-homologous receiver domain
ATC03_17970	SM00850	LytTr DNA-binding domain
ATC03_18000	SM00788	Adenylosuccinate synthetase
ATC03_18025	SM00155	Phospholipase D. Active site motifs.
ATC03_18115	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATC03_18115	SM00267	diguanylate cyclase
ATC03_18130	SM00052	Putative diguanylate phosphodiesterase
ATC03_18160	SM00529	Helix-turn-helix diphteria tox regulatory element
ATC03_18160	SM00899	ATC03_18160
ATC03_18190	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_18205	SM00422	helix_turn_helix, mercury resistance
ATC03_18215	SM00100	Cyclic nucleotide-monophosphate binding domain
ATC03_18265	SM00382	ATPases associated with a variety of cellular activities
ATC03_18265	SM00421	helix_turn_helix, Lux Regulon
ATC03_18310	SM00382	ATPases associated with a variety of cellular activities
ATC03_18335	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_18380	SM00829	Enoylreductase
ATC03_18405	SM00382	ATPases associated with a variety of cellular activities
ATC03_18435	SM00382	ATPases associated with a variety of cellular activities
ATC03_18505	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_18505	SM00895	ATC03_18505
ATC03_18525	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC03_18545	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_18560	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_18560	SM00895	ATC03_18560
ATC03_18565	SM00382	ATPases associated with a variety of cellular activities
ATC03_18570	SM00062	Bacterial periplasmic substrate-binding proteins
ATC03_18665	SM00421	helix_turn_helix, Lux Regulon
ATC03_18665	SM00448	cheY-homologous receiver domain
ATC03_18675	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_18695	SM00382	ATPases associated with a variety of cellular activities
ATC03_18755	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_18765	SM00829	Enoylreductase
ATC03_18810	SM00867	YceI-like domain 
ATC03_18820	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_18905	SM00422	helix_turn_helix, mercury resistance
ATC03_18910	SM00271	DnaJ molecular chaperone homology domain
ATC03_18925	SM00954	Region found in RelA / SpoT proteins
ATC03_18945	SM00090	RIO-like kinase
ATC03_18970	SM01217	ATC03_18970
ATC03_18980	SM00382	ATPases associated with a variety of cellular activities
ATC03_18995	SM00382	ATPases associated with a variety of cellular activities
ATC03_19050	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_19075	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_19100	SM00382	ATPases associated with a variety of cellular activities
ATC03_19105	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_19220	SM01060	ATC03_19220
ATC03_19265	SM00382	ATPases associated with a variety of cellular activities
ATC03_19275	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_19275	SM00866	ATC03_19275
ATC03_19305	SM00382	ATPases associated with a variety of cellular activities
ATC03_19320	SM00411	bacterial (prokaryotic) histone like domain
ATC03_19355	SM00382	ATPases associated with a variety of cellular activities
ATC03_19385	SM00382	ATPases associated with a variety of cellular activities
ATC03_19405	SM00861	Transketolase, pyrimidine binding domain
ATC03_19440	SM00226	Low molecular weight phosphatase family
ATC03_19465	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ATC03_19465	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ATC03_19470	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_19500	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_19530	SM00354	helix_turn _helix lactose operon repressor
ATC03_19535	SM00062	Bacterial periplasmic substrate-binding proteins
ATC03_19545	SM00382	ATPases associated with a variety of cellular activities
ATC03_19585	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC03_19620	SM00470	ParB-like nuclease domain
ATC03_19640	SM00393	Putative single-stranded nucleic acids-binding domain
