locus-tag	class	description
C1O40_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
C1O40_00010	COG1131	(ABC) transporter
C1O40_00030	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
C1O40_00035	COG0564	pseudouridine synthase activity
C1O40_00050	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
C1O40_00055	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
C1O40_00065	COG0513	Belongs to the DEAD box helicase family
C1O40_00070	COG0513	Belongs to the DEAD box helicase family
C1O40_00125	COG1971	Probably functions as a manganese efflux pump
C1O40_00155	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C1O40_00180	COG0442	prolyl-tRNA aminoacylation
C1O40_00195	COG2963	transposase activity
C1O40_00235	COG0531	amino acid
C1O40_00240	COG2066	Belongs to the glutaminase family
C1O40_00255	COG1115	amino acid carrier protein
C1O40_00270	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
C1O40_00275	COG2890	protein-(glutamine-N5) methyltransferase activity
C1O40_00285	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
C1O40_00305	COG2226	methyltransferase
C1O40_00310	COG0534	Mate efflux family protein
C1O40_00345	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
C1O40_00350	COG3525	Glycosyl hydrolase, family 20, catalytic domain
C1O40_00365	COG1121	(ABC) transporter
C1O40_00375	COG3880	PFAM UvrB UvrC protein
C1O40_00380	COG3869	Catalyzes the specific phosphorylation of arginine residues in
C1O40_00385	COG3869	Catalyzes the specific phosphorylation of arginine residues in
C1O40_00390	COG0542	response to heat
C1O40_00400	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
C1O40_00405	COG0179	Fumarylacetoacetate (FAA) hydrolase
C1O40_00410	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
C1O40_00425	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
C1O40_00425	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
C1O40_00435	COG0180	Tryptophanyl-tRNA synthetase
C1O40_00445	COG1692	metallophosphoesterase
C1O40_00455	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
C1O40_00520	COG0515	serine threonine protein kinase
C1O40_00610	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C1O40_00615	COG2816	NAD+ diphosphatase activity
C1O40_00625	COG0156	8-amino-7-oxononanoate synthase activity
C1O40_00640	COG1192	Involved in chromosome partitioning
C1O40_00645	COG0515	serine threonine protein kinase
C1O40_00645	COG3266	domain, Protein
C1O40_00685	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
C1O40_00695	COG3189	MarR family transcriptional regulator
C1O40_00705	COG0181	hydroxymethylbilane synthase activity
C1O40_00710	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
C1O40_00720	COG1469	GTP cyclohydrolase I activity
C1O40_00725	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
C1O40_00735	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
C1O40_00740	COG1940	carbohydrate kinase activity
C1O40_00755	COG0494	nUDIX hydrolase
C1O40_00760	COG1566	PFAM secretion protein HlyD family protein
C1O40_00765	COG1136	(ABC) transporter
C1O40_00765	COG0577	efflux transmembrane transporter activity
C1O40_00770	COG1136	(ABC) transporter
C1O40_00770	COG0577	efflux transmembrane transporter activity
C1O40_00775	COG1538	Outer membrane efflux protein
C1O40_00790	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C1O40_00835	COG1720	tRNA m6t6A37 methyltransferase activity
C1O40_00840	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
C1O40_00845	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
C1O40_00850	COG0540	Belongs to the ATCase OTCase family
C1O40_00855	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
C1O40_00870	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
C1O40_00885	COG0750	zinc metalloprotease
C1O40_00895	COG3119	arylsulfatase activity
C1O40_00905	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
C1O40_00905	COG1918	ferrous iron import across plasma membrane
C1O40_00980	COG1475	DNA binding
C1O40_01015	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
C1O40_01035	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C1O40_01040	COG0601	transmembrane transport
C1O40_01090	COG0849	cell division
C1O40_01100	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
C1O40_01105	COG1132	(ABC) transporter
C1O40_01110	COG1132	(ABC) transporter
C1O40_01125	COG1127	ABC transporter
C1O40_01130	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
C1O40_01165	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
C1O40_01180	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
C1O40_01185	COG0504	CTP synthase activity
C1O40_01190	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
C1O40_01215	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C1O40_01225	COG1322	Protein conserved in bacteria
C1O40_01230	COG0546	phosphoglycolate phosphatase activity
C1O40_01235	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
C1O40_01245	COG4591	ABC-type transport system involved in lipoprotein release permease component
C1O40_01245	COG4591	ABC-type transport system involved in lipoprotein release permease component
C1O40_01270	COG3209	COG3209 Rhs family protein
C1O40_01275	COG4104	PAAR repeat-containing protein
C1O40_01275	COG3209	COG3209 Rhs family protein
C1O40_01300	COG3209	COG3209 Rhs family protein
C1O40_01335	COG2234	aminopeptidase activity
C1O40_01340	COG0657	acetylesterase activity
C1O40_01340	COG2755	lipolytic protein G-D-S-L family
C1O40_01365	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
C1O40_01385	COG0335	large ribosomal subunit rRNA binding
C1O40_01395	COG0346	lactoylglutathione lyase activity
C1O40_01415	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
C1O40_01425	COG0427	acetyl-CoA hydrolase
C1O40_01440	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
C1O40_01450	COG0205	6-phosphofructokinase activity
C1O40_01465	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
C1O40_01470	COG0028	Belongs to the TPP enzyme family
C1O40_01490	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
C1O40_01505	COG0471	metal ion transport
C1O40_01515	COG0351	phosphomethylpyrimidine kinase
C1O40_01585	COG0242	peptide deformylase activity
C1O40_01590	COG1063	alcohol dehydrogenase
C1O40_01600	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
C1O40_01605	COG1393	Belongs to the ArsC family
C1O40_01610	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
C1O40_01635	COG1187	pseudouridine synthase activity
C1O40_01650	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
C1O40_01660	COG0539	negative regulation of cytoplasmic translation
C1O40_01715	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
C1O40_01720	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
C1O40_01725	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
C1O40_01730	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
C1O40_01770	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
C1O40_01850	COG3015	lipoprotein NlpE involved in copper resistance
C1O40_01920	COG0305	Participates in initiation and elongation during chromosome replication
C1O40_02030	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
C1O40_02030	COG0662	Cupin 2, conserved barrel domain protein
C1O40_02045	COG0333	Belongs to the bacterial ribosomal protein bL32 family
C1O40_02055	COG0537	adenosine 5'-monophosphoramidase activity
C1O40_02060	COG0009	L-threonylcarbamoyladenylate synthase
C1O40_02065	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
C1O40_02070	COG0228	four-way junction DNA binding
C1O40_02100	COG1862	Preprotein translocase
C1O40_02110	COG0220	tRNA (guanine-N7-)-methyltransferase activity
C1O40_02120	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
C1O40_02125	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
C1O40_02130	COG0776	regulation of translation
C1O40_02160	COG0811	peptide transport
C1O40_02175	COG3250	beta-galactosidase activity
C1O40_02180	COG0525	valine-tRNA ligase activity
C1O40_02195	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
C1O40_02200	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
C1O40_02205	COG0255	Belongs to the universal ribosomal protein uL29 family
C1O40_02210	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
C1O40_02215	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
C1O40_02220	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
C1O40_02230	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
C1O40_02235	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
C1O40_02240	COG0089	rRNA binding
C1O40_02245	COG0088	Forms part of the polypeptide exit tunnel
C1O40_02250	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
C1O40_02255	COG0051	transcription antitermination factor activity, RNA binding
C1O40_02260	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
C1O40_02265	COG0049	tRNA binding
C1O40_02270	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
C1O40_02280	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
C1O40_02290	COG3852	Histidine kinase
C1O40_02305	COG1722	exodeoxyribonuclease VII activity
C1O40_02310	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
C1O40_02325	COG0795	lipopolysaccharide-transporting ATPase activity
C1O40_02330	COG1160	GTP binding
C1O40_02350	COG0577	efflux transmembrane transporter activity
C1O40_02350	COG1136	(ABC) transporter
C1O40_02360	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
C1O40_02415	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
C1O40_02425	COG0799	negative regulation of ribosome biogenesis
C1O40_02430	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
C1O40_02435	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
C1O40_02500	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
C1O40_02515	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
C1O40_02525	COG4221	oxidoreductase activity
C1O40_02545	COG0038	chloride channel
C1O40_02555	COG3525	Glycosyl hydrolase, family 20, catalytic domain
C1O40_02570	COG0076	glutamate decarboxylase activity
C1O40_02585	COG0167	dihydroorotate dehydrogenase activity
C1O40_02590	COG0352	thiamine-phosphate diphosphorylase activity
C1O40_02610	COG1253	flavin adenine dinucleotide binding
C1O40_02615	COG1253	flavin adenine dinucleotide binding
C1O40_02620	COG1185	polyribonucleotide nucleotidyltransferase activity
C1O40_02625	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
C1O40_02675	COG0101	tRNA pseudouridine synthase activity
C1O40_02680	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
C1O40_02700	COG4968	Prepilin-type N-terminal cleavage methylation domain
C1O40_02715	COG3525	Glycosyl hydrolase, family 20, catalytic domain
C1O40_02720	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
C1O40_02740	COG1136	(ABC) transporter
C1O40_02745	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
C1O40_02755	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
C1O40_02765	COG1116	anion transmembrane transporter activity
C1O40_02780	COG3525	Glycosyl hydrolase, family 20, catalytic domain
C1O40_02785	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
C1O40_02790	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
C1O40_02800	COG0828	Belongs to the bacterial ribosomal protein bS21 family
C1O40_02805	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
C1O40_02815	COG2814	Major facilitator Superfamily
C1O40_02830	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
C1O40_02830	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
C1O40_02835	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
C1O40_02840	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
C1O40_02845	COG0552	protein localization to endoplasmic reticulum
C1O40_02850	COG0820	rRNA (adenine-C2-)-methyltransferase activity
C1O40_02870	COG1546	Belongs to the CinA family
C1O40_02870	COG1058	Belongs to the CinA family
C1O40_02880	COG0456	acetyltransferase
C1O40_02905	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
C1O40_02910	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
C1O40_02915	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
C1O40_02920	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
C1O40_02935	COG0758	DNA mediated transformation
C1O40_02940	COG1686	Belongs to the peptidase S11 family
C1O40_02945	COG0012	GTP binding
C1O40_02960	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
C1O40_02960	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
C1O40_02975	COG3119	arylsulfatase activity
C1O40_03010	COG2259	Doxx family
C1O40_03015	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
C1O40_03045	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
C1O40_03065	COG2326	polyphosphate kinase activity
C1O40_03070	COG1349	DNA-binding transcription factor activity
C1O40_03090	COG1104	cysteine desulfurase activity
C1O40_03100	COG1104	cysteine desulfurase activity
C1O40_03105	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
C1O40_03110	COG1162	GTPase activity
C1O40_03125	COG0742	ribosomal rna small subunit methyltransferase
C1O40_03140	COG2326	polyphosphate kinase activity
C1O40_03150	COG5434	Belongs to the glycosyl hydrolase 28 family
C1O40_03160	COG1073	alpha beta
C1O40_03165	COG0802	atpase or kinase
C1O40_03175	COG0211	Belongs to the bacterial ribosomal protein bL27 family
C1O40_03180	COG0735	belongs to the Fur family
C1O40_03185	COG0396	ATPase activity
C1O40_03190	COG0719	Fe-S assembly protein
C1O40_03195	COG0719	Fe-S assembly protein
C1O40_03255	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
C1O40_03275	COG0355	proton-transporting ATP synthase activity, rotational mechanism
C1O40_03280	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
C1O40_03285	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
C1O40_03290	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
C1O40_03295	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
C1O40_03300	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
C1O40_03310	COG0356	it plays a direct role in the translocation of protons across the membrane
C1O40_03365	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
C1O40_03400	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
C1O40_03405	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
C1O40_03410	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
C1O40_03425	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
C1O40_03435	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
C1O40_03440	COG0047	phosphoribosylformylglycinamidine synthase activity
C1O40_03450	COG1363	Peptidase, m42
C1O40_03465	COG1077	Cell shape determining protein MreB Mrl
C1O40_03470	COG1530	ribonuclease E activity
C1O40_03495	COG0848	biopolymer transport protein
C1O40_03510	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
C1O40_03535	COG0134	indole-3-glycerol-phosphate synthase activity
C1O40_03540	COG0792	nuclease activity
C1O40_03550	COG1253	flavin adenine dinucleotide binding
C1O40_03560	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
C1O40_03580	COG0137	argininosuccinate synthase activity
C1O40_03595	COG0149	triose-phosphate isomerase activity
C1O40_03630	COG1040	competence protein
C1O40_03640	COG3956	TIGRFAM MazG family protein
C1O40_03665	COG1663	tetraacyldisaccharide 4'-kinase activity
C1O40_03675	COG0612	Peptidase, M16
C1O40_03695	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
C1O40_03700	COG0583	DNA-binding transcription factor activity
C1O40_03730	COG0673	inositol 2-dehydrogenase activity
C1O40_03735	COG3034	peptidoglycan biosynthetic process
C1O40_03765	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
C1O40_03770	COG0424	maF-like protein
C1O40_03775	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
C1O40_03805	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
C1O40_03815	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
C1O40_03825	COG0571	ribonuclease III activity
C1O40_03840	COG0708	Exodeoxyribonuclease III
C1O40_03860	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
C1O40_03880	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
C1O40_03895	COG2226	methyltransferase
C1O40_03905	COG2076	Multidrug Resistance protein
C1O40_03980	COG2255	four-way junction helicase activity
C1O40_03985	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
C1O40_03990	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
C1O40_03995	COG1215	transferase activity, transferring glycosyl groups
C1O40_04000	COG1216	Glycosyl transferase, family 2
C1O40_04000	COG0463	Glycosyl transferase, family 2
C1O40_04025	COG0438	transferase activity, transferring glycosyl groups
C1O40_04035	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
C1O40_04045	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
C1O40_04055	COG0482	sulfurtransferase activity
C1O40_04060	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
C1O40_04070	COG2860	membrane
C1O40_04075	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
C1O40_04080	COG2001	Belongs to the MraZ family
C1O40_04085	COG0275	rRNA processing
C1O40_04095	COG0768	penicillin binding
C1O40_04100	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
C1O40_04105	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
C1O40_04110	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
C1O40_04115	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
C1O40_04130	COG0772	Belongs to the SEDS family
C1O40_04135	COG0772	Belongs to the SEDS family
C1O40_04140	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
C1O40_04150	COG1181	Belongs to the D-alanine--D-alanine ligase family
C1O40_04160	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
C1O40_04165	COG0860	N-Acetylmuramoyl-L-alanine amidase
C1O40_04170	COG0321	lipoyl(octanoyl) transferase activity
C1O40_04175	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
C1O40_04180	COG0066	3-isopropylmalate dehydratase activity
C1O40_04190	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C1O40_04200	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
C1O40_04210	COG4608	Belongs to the ABC transporter superfamily
C1O40_04220	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
C1O40_04235	COG2877	3-deoxy-8-phosphooctulonate synthase activity
C1O40_04250	COG1137	ATPase activity
C1O40_04260	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
C1O40_04290	COG0017	Asparaginyl-tRNA synthetase
C1O40_04300	COG3118	belongs to the thioredoxin family
C1O40_04345	COG0583	DNA-binding transcription factor activity
C1O40_04350	COG2855	membrane
C1O40_04355	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
C1O40_04370	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
C1O40_04380	COG0602	queuosine metabolic process
C1O40_04385	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
C1O40_04390	COG0217	transcriptional regulatory protein
C1O40_04395	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
C1O40_04410	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
C1O40_04415	COG4864	UPF0365 protein
C1O40_04425	COG2022	thiamine diphosphate biosynthetic process
C1O40_04430	COG0531	amino acid
C1O40_04440	COG0628	permease
C1O40_04445	COG0019	diaminopimelate decarboxylase activity
C1O40_04450	COG0191	fructose-bisphosphate aldolase activity
C1O40_04530	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
C1O40_04535	COG0517	IMP dehydrogenase activity
C1O40_04535	COG0516	GMP reductase activity
C1O40_04565	COG0546	phosphoglycolate phosphatase activity
C1O40_04590	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
C1O40_04605	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
C1O40_04610	COG0196	riboflavin kinase activity
C1O40_04615	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
C1O40_04630	COG1408	metallophosphoesterase
C1O40_04640	COG1216	Glycosyl transferase, family 2
C1O40_04640	COG1442	glycosyl transferase family 8
C1O40_04650	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C1O40_04655	COG1216	Glycosyl transferase, family 2
C1O40_04675	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
C1O40_04675	COG2755	lipolytic protein G-D-S-L family
C1O40_04695	COG0471	metal ion transport
C1O40_04695	COG0490	domain, Protein
C1O40_04740	COG0588	phosphoglycerate mutase activity
C1O40_04745	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
C1O40_04755	COG0477	Major facilitator Superfamily
C1O40_04760	COG1607	acyl-coa hydrolase
C1O40_04770	COG1028	Short-chain dehydrogenase reductase Sdr
C1O40_04780	COG1525	nuclease
C1O40_04795	COG1475	DNA binding
C1O40_04800	COG3969	phosphoadenosine phosphosulfate
C1O40_04815	COG0473	3-isopropylmalate dehydrogenase activity
C1O40_04850	COG0535	radical SAM domain protein
C1O40_04865	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
C1O40_04870	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
C1O40_04880	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
C1O40_04900	COG1733	regulation of RNA biosynthetic process
C1O40_04910	COG0107	imidazoleglycerol-phosphate synthase activity
C1O40_04920	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
C1O40_04935	COG1643	Atp-dependent helicase
C1O40_04940	COG0440	acetolactate synthase activity
C1O40_04945	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C1O40_04955	COG0445	tRNA wobble uridine modification
C1O40_04965	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
C1O40_04965	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
C1O40_04970	COG0592	DNA-directed DNA polymerase activity
C1O40_04995	COG1388	LysM domain
C1O40_04995	COG0791	NLP P60 protein
C1O40_05000	COG0084	hydrolase, TatD family'
C1O40_05010	COG3250	beta-galactosidase activity
C1O40_05025	COG2205	protein histidine kinase activity
C1O40_05030	COG0745	RESPONSE REGULATOR receiver
C1O40_05040	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
C1O40_05065	COG0542	response to heat
C1O40_05115	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
C1O40_05125	COG0659	secondary active sulfate transmembrane transporter activity
C1O40_05130	COG0165	Argininosuccinate lyase
C1O40_05150	COG0148	phosphopyruvate hydratase activity
C1O40_05155	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
C1O40_05170	COG3481	metal-dependent phosphohydrolase, HD sub domain
C1O40_05180	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
C1O40_05185	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
C1O40_05250	COG0490	domain, Protein
C1O40_05250	COG2985	domain, Protein
C1O40_05265	COG0471	metal ion transport
C1O40_05310	COG1592	Rubrerythrin
C1O40_05320	COG1363	Peptidase, m42
C1O40_05325	COG3525	Glycosyl hydrolase, family 20, catalytic domain
C1O40_05335	COG1785	Belongs to the alkaline phosphatase family
C1O40_05340	COG1970	mechanosensitive ion channel activity
C1O40_05345	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
C1O40_05355	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
C1O40_05365	COG2217	Heavy metal translocating P-type atpase
C1O40_05370	COG0497	DNA recombination
C1O40_05375	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
C1O40_05375	COG0321	lipoyl(octanoyl) transferase activity
C1O40_05380	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
C1O40_05410	COG0508	dehydrogenase complex catalyzes the overall conversion of
C1O40_05415	COG0022	dehydrogenase e1 component
C1O40_05420	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
C1O40_05435	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C1O40_05440	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C1O40_05445	COG3210	domain, Protein
C1O40_05495	COG5632	N-Acetylmuramoyl-L-alanine amidase
C1O40_05495	COG3409	Peptidoglycan-binding domain 1 protein
C1O40_05500	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
C1O40_05530	COG1690	Belongs to the RtcB family
C1O40_05540	COG2814	Major facilitator Superfamily
C1O40_05550	COG2096	Adenosyltransferase
C1O40_05560	COG0557	exoribonuclease II activity
C1O40_05565	COG0557	exoribonuclease II activity
C1O40_05590	COG0826	peptidase U32
C1O40_05595	COG0285	dihydrofolate synthase activity
C1O40_05615	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
C1O40_05625	COG0737	Belongs to the 5'-nucleotidase family
C1O40_05635	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
C1O40_05640	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
C1O40_05645	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
C1O40_05655	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
C1O40_05660	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
C1O40_05665	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
C1O40_05670	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
C1O40_05675	COG0200	Binds to the 23S rRNA
C1O40_05680	COG0201	protein transport
C1O40_05685	COG0563	adenylate kinase activity
C1O40_05690	COG0024	Methionine aminopeptidase
C1O40_05710	COG1442	glycosyl transferase family 8
C1O40_05725	COG1216	Glycosyl transferase, family 2
C1O40_05735	COG1216	Glycosyl transferase, family 2
C1O40_05750	COG1216	Glycosyl transferase, family 2
C1O40_05755	COG0693	protein deglycase activity
C1O40_05760	COG0508	dehydrogenase complex catalyzes the overall conversion of
C1O40_05765	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
C1O40_05770	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
C1O40_05785	COG1966	Carbon starvation protein
C1O40_05795	COG3119	arylsulfatase activity
C1O40_05810	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
C1O40_05815	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
C1O40_05820	COG0195	Participates in both transcription termination and antitermination
C1O40_05825	COG0708	Exodeoxyribonuclease III
C1O40_05830	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
C1O40_05835	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
C1O40_05840	COG2006	4fe-4S ferredoxin, iron-sulfur binding domain protein
C1O40_05855	COG1716	ATPase activity
C1O40_05855	COG1131	(ABC) transporter
C1O40_05855	COG0842	Transport permease protein
C1O40_05880	COG0724	RNA recognition motif
C1O40_05885	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
C1O40_05905	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
C1O40_05915	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
C1O40_05920	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
C1O40_05935	COG1490	D-aminoacyl-tRNA deacylase activity
C1O40_05950	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
C1O40_05955	COG1053	succinate dehydrogenase
C1O40_06005	COG1028	Short-chain dehydrogenase reductase Sdr
C1O40_06015	COG0488	(ABC) transporter
C1O40_06025	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
C1O40_06035	COG1253	flavin adenine dinucleotide binding
C1O40_06040	COG1028	Short-chain dehydrogenase reductase Sdr
C1O40_06050	COG1073	alpha beta
C1O40_06060	COG0667	Aldo Keto reductase
C1O40_06120	COG2267	carboxylic ester hydrolase activity
C1O40_06125	COG2095	MarC family integral membrane protein
C1O40_06155	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
C1O40_06160	COG0488	(ABC) transporter
C1O40_06245	COG3119	arylsulfatase activity
C1O40_06260	COG0481	GTPase activity
C1O40_06290	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
C1O40_06295	COG0085	RNA polymerase activity
C1O40_06300	COG0222	ribosome binding
C1O40_06305	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
C1O40_06310	COG0081	regulation of translation
C1O40_06315	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
C1O40_06320	COG0250	Participates in transcription elongation, termination and antitermination
C1O40_06335	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
C1O40_06345	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
C1O40_06355	COG0740	serine-type endopeptidase activity
C1O40_06360	COG0544	peptidyl-prolyl cis-trans isomerase activity
C1O40_06380	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
C1O40_06405	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C1O40_06445	COG2226	methyltransferase
C1O40_06450	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
C1O40_06455	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
C1O40_06470	COG0446	pyridine nucleotide-disulphide oxidoreductase
C1O40_06470	COG1902	pentaerythritol trinitrate reductase activity
C1O40_06480	COG3119	arylsulfatase activity
C1O40_06485	COG0514	ATP-dependent DNA helicase (RecQ)
C1O40_06510	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
C1O40_06565	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
C1O40_06580	COG1858	cytochrome C peroxidase
C1O40_06585	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
C1O40_06590	COG0590	tRNA wobble adenosine to inosine editing
C1O40_06595	COG1940	carbohydrate kinase activity
C1O40_06600	COG2217	Heavy metal translocating P-type atpase
C1O40_06645	COG1363	Peptidase, m42
C1O40_06650	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
C1O40_06665	COG0006	proline dipeptidase activity
C1O40_06670	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
C1O40_06695	COG5002	protein histidine kinase activity
C1O40_06700	COG0745	RESPONSE REGULATOR receiver
C1O40_06705	COG0129	dihydroxy-acid dehydratase activity
C1O40_06805	COG1368	sulfuric ester hydrolase activity
C1O40_06845	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
C1O40_06850	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
C1O40_06870	COG0534	Mate efflux family protein
C1O40_06875	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
C1O40_06890	COG1876	peptidase activity
C1O40_07010	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
C1O40_07015	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
C1O40_07020	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
C1O40_07045	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C1O40_07060	COG0667	Aldo Keto reductase
C1O40_07065	COG0789	Transcriptional regulator
C1O40_07115	COG0714	Associated with various cellular activities
C1O40_07120	COG2311	Membrane
C1O40_07140	COG1090	epimerase
C1O40_07160	COG1119	ATPase activity
C1O40_07165	COG2186	Transcriptional regulator
C1O40_07190	COG0148	phosphopyruvate hydratase activity
C1O40_07200	COG0436	Aminotransferase
C1O40_07205	COG1477	protein flavinylation
C1O40_07220	COG0227	Belongs to the bacterial ribosomal protein bL28 family
C1O40_07235	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
C1O40_07255	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
C1O40_07265	COG1199	ATP-dependent helicase activity
C1O40_07295	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
C1O40_07305	COG0359	binds to the 23S rRNA
C1O40_07310	COG0138	bifunctional purine biosynthesis protein purh
C1O40_07315	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
C1O40_07320	COG0736	holo-[acyl-carrier-protein] synthase activity
C1O40_07335	COG5632	N-Acetylmuramoyl-L-alanine amidase
C1O40_07335	COG3409	Peptidoglycan-binding domain 1 protein
C1O40_07340	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
C1O40_07345	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
C1O40_07355	COG0437	4 iron, 4 sulfur cluster binding
C1O40_07375	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
C1O40_07440	COG0284	orotidine-5'-phosphate decarboxylase activity
C1O40_07460	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
C1O40_07465	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
C1O40_07485	COG2003	Belongs to the UPF0758 family
C1O40_07490	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
C1O40_07490	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
C1O40_07495	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
C1O40_07500	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
C1O40_07505	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
C1O40_07510	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
C1O40_07515	COG0322	excinuclease ABC activity
C1O40_07520	COG0811	peptide transport
C1O40_07525	COG0848	biopolymer transport protein
C1O40_07535	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
C1O40_07540	COG0483	inositol monophosphate 1-phosphatase activity
C1O40_07545	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
C1O40_07555	COG1482	cell wall glycoprotein biosynthetic process
C1O40_07565	COG1757	Na H antiporter
C1O40_07570	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C1O40_07575	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
C1O40_07580	COG0505	Belongs to the CarA family
C1O40_07600	COG0706	membrane insertase activity
C1O40_07605	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
C1O40_07615	COG0230	Belongs to the bacterial ribosomal protein bL34 family
C1O40_07635	COG2755	lipolytic protein G-D-S-L family
C1O40_07635	COG0657	acetylesterase activity
C1O40_07645	COG0676	glucose-6-phosphate 1-epimerase activity
C1O40_07665	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
C1O40_07685	COG1760	l-serine dehydratase
C1O40_07690	COG3118	belongs to the thioredoxin family
C1O40_07690	COG0492	ferredoxin-NADP+ reductase activity
C1O40_07740	COG1408	metallophosphoesterase
C1O40_07755	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
C1O40_07760	COG0545	Peptidyl-prolyl cis-trans isomerase
C1O40_07790	COG0826	peptidase U32
C1O40_07800	COG1262	PFAM Formylglycine-generating sulfatase enzyme
C1O40_07825	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
C1O40_07845	COG0529	Catalyzes the synthesis of activated sulfate
C1O40_07845	COG2895	sulfate adenylyltransferase (ATP) activity
C1O40_07850	COG0175	sulfate reduction
C1O40_07855	COG0175	sulfate reduction
C1O40_07875	COG0581	inorganic phosphate transmembrane transporter activity
C1O40_07880	COG0573	inorganic phosphate transmembrane transporter activity
C1O40_07890	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
C1O40_07900	COG2017	converts alpha-aldose to the beta-anomer
C1O40_07915	COG0612	Peptidase, M16
C1O40_07920	COG0612	Peptidase, M16
C1O40_07925	COG2207	Transcriptional regulator
C1O40_07925	COG1917	Cupin 2, conserved barrel domain protein
C1O40_07970	COG0233	cytoplasmic translational termination
C1O40_07975	COG0528	UMP kinase activity
C1O40_07980	COG0668	transmembrane transport
C1O40_07990	COG0450	alkyl hydroperoxide reductase
C1O40_07995	COG0733	neurotransmitter:sodium symporter activity
C1O40_08020	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
C1O40_08025	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
C1O40_08030	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
C1O40_08050	COG0842	Transport permease protein
C1O40_08055	COG0842	Transport permease protein
C1O40_08060	COG1131	(ABC) transporter
C1O40_08070	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
C1O40_08075	COG1183	phosphatidylcholine synthase activity
C1O40_08095	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
C1O40_08100	COG1028	Short-chain dehydrogenase reductase Sdr
C1O40_08125	COG0156	8-amino-7-oxononanoate synthase activity
C1O40_08130	COG0156	8-amino-7-oxononanoate synthase activity
C1O40_08160	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
C1O40_08165	COG0124	histidyl-tRNA synthetase
C1O40_08175	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
C1O40_08180	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
C1O40_08185	COG0298	carbon dioxide binding
C1O40_08215	COG0443	Heat shock 70 kDa protein
C1O40_08220	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
C1O40_08225	COG0459	protein refolding
C1O40_08275	COG0632	four-way junction helicase activity
C1O40_08285	COG0126	phosphoglycerate kinase activity
C1O40_08295	COG1082	Xylose isomerase domain protein TIM barrel
C1O40_08305	COG0863	Belongs to the N(4) N(6)-methyltransferase family
C1O40_08315	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
C1O40_08325	COG2271	Major facilitator Superfamily
C1O40_08345	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
C1O40_08355	COG0037	tRNA processing
C1O40_08360	COG0254	rRNA binding
C1O40_08395	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
C1O40_08400	COG0039	L-malate dehydrogenase activity
C1O40_08425	COG0778	Nitroreductase
C1O40_08430	COG0564	pseudouridine synthase activity
C1O40_08455	COG1126	abc transporter atp-binding protein
C1O40_08460	COG0765	amino acid transport
C1O40_08470	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
C1O40_08475	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
C1O40_08525	COG1872	DUF167
C1O40_08530	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
C1O40_08540	COG1385	rRNA (uridine-N3-)-methyltransferase activity
C1O40_08550	COG5434	Belongs to the glycosyl hydrolase 28 family
C1O40_08570	COG0277	FAD linked oxidase domain protein
C1O40_08595	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
C1O40_08600	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
C1O40_08610	COG0131	Imidazoleglycerol-phosphate dehydratase
C1O40_08615	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
C1O40_08620	COG0360	Binds together with S18 to 16S ribosomal RNA
C1O40_08630	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
C1O40_08645	COG1686	Belongs to the peptidase S11 family
C1O40_08660	COG0428	transporter
C1O40_08665	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
C1O40_08675	COG3977	Valine--pyruvate aminotransferase
C1O40_08680	COG1561	YicC-like family, N-terminal region
C1O40_08690	COG0471	metal ion transport
C1O40_08690	COG3273	potassium ion transport
C1O40_08695	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
C1O40_08710	COG1575	Belongs to the MenA family. Type 1 subfamily
C1O40_08745	COG0726	polysaccharide deacetylase
C1O40_08750	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
C1O40_08750	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
C1O40_08775	COG0202	RNA polymerase activity
C1O40_08780	COG0203	ribosomal protein L17
C1O40_08785	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
C1O40_08800	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
C1O40_08815	COG2885	chlorophyll binding
C1O40_08880	COG0667	Aldo Keto reductase
C1O40_08885	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
C1O40_08905	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
C1O40_08910	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
C1O40_08915	COG0134	indole-3-glycerol-phosphate synthase activity
C1O40_08920	COG0135	phosphoribosylanthranilate isomerase activity
C1O40_08930	COG0159	tryptophan synthase activity
C1O40_08955	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
C1O40_08960	COG0257	Belongs to the bacterial ribosomal protein bL36 family
C1O40_08970	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
C1O40_09010	COG0561	phosphatase activity
C1O40_09015	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C1O40_09020	COG2223	nitrite transmembrane transporter activity
C1O40_09040	COG0556	nucleotide-excision repair
C1O40_09050	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
C1O40_09070	COG1074	ATP-dependent DNA helicase activity
C1O40_09075	COG1074	ATP-dependent DNA helicase activity
C1O40_09090	COG0697	spore germination
C1O40_09095	COG2373	Large extracellular alpha-helical protein
C1O40_09105	COG1979	alcohol dehydrogenase
C1O40_09115	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
C1O40_09140	COG0372	Belongs to the citrate synthase family
C1O40_09160	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
C1O40_09170	COG1187	pseudouridine synthase activity
C1O40_09180	COG0105	UTP biosynthetic process
C1O40_09185	COG1215	transferase activity, transferring glycosyl groups
C1O40_09190	COG0463	Glycosyl transferase, family 2
C1O40_09200	COG1459	type II secretion system
C1O40_09205	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
C1O40_09215	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
C1O40_09235	COG0728	peptidoglycan biosynthetic process
C1O40_09240	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
C1O40_09240	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
C1O40_09255	COG1649	PFAM Uncharacterised BCR, COG1649
C1O40_09260	COG1691	(AIR) carboxylase
C1O40_09265	COG1606	tRNA processing
C1O40_09270	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
C1O40_09275	COG0142	geranyltranstransferase activity
C1O40_09290	COG2151	metal-sulfur cluster biosynthetic enzyme
C1O40_09305	COG1007	ATP synthesis coupled electron transport
C1O40_09310	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C1O40_09325	COG0713	ATP synthesis coupled electron transport
C1O40_09330	COG0839	Belongs to the complex I subunit 6 family
C1O40_09340	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
C1O40_09345	COG1034	ATP synthesis coupled electron transport
C1O40_09350	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
C1O40_09355	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
C1O40_09360	COG0649	NAD binding
C1O40_09370	COG0726	polysaccharide deacetylase
C1O40_09380	COG0307	riboflavin synthase, alpha
C1O40_09385	COG2264	protein methyltransferase activity
C1O40_09405	COG3210	domain, Protein
C1O40_09410	COG1640	4-alpha-glucanotransferase
C1O40_09420	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
C1O40_09425	COG1030	water channel activity
C1O40_09430	COG0358	DNA primase activity
C1O40_09435	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
C1O40_09440	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
C1O40_09455	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
C1O40_09460	COG0793	Belongs to the peptidase S41A family
C1O40_09475	COG1643	Atp-dependent helicase
C1O40_09500	COG1450	Type ii and iii secretion system protein
C1O40_09520	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
C1O40_09540	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
C1O40_09555	COG0268	Binds directly to 16S ribosomal RNA
C1O40_09560	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
C1O40_09565	COG0028	Belongs to the TPP enzyme family
C1O40_09575	COG0688	phosphatidylethanolamine metabolic process
C1O40_09580	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
C1O40_09590	COG3119	arylsulfatase activity
C1O40_09605	COG1166	arginine decarboxylase activity
C1O40_09620	COG3250	beta-galactosidase activity
C1O40_09625	COG3250	beta-galactosidase activity
C1O40_09630	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
C1O40_09635	COG3525	Glycosyl hydrolase, family 20, catalytic domain
C1O40_09650	COG0205	6-phosphofructokinase activity
C1O40_09665	COG0535	radical SAM domain protein
C1O40_09710	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
C1O40_09715	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
C1O40_09735	COG4771	TonB-dependent receptor
C1O40_09755	COG0402	S-adenosylhomocysteine deaminase activity
C1O40_09760	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
C1O40_09780	COG1294	oxidase, subunit
C1O40_09785	COG1271	oxidase subunit
C1O40_09795	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
C1O40_09820	COG1846	Transcriptional regulator
C1O40_09845	COG2949	membrane
C1O40_09875	COG0514	ATP-dependent DNA helicase (RecQ)
C1O40_09890	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
C1O40_09895	COG0045	succinate-CoA ligase (ADP-forming) activity
C1O40_09935	COG0318	PFAM AMP-dependent synthetase and ligase
C1O40_09935	COG0204	Acyl-transferase
C1O40_09965	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C1O40_09970	COG2205	protein histidine kinase activity
C1O40_09990	COG0113	porphobilinogen synthase activity
C1O40_10000	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
C1O40_10005	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
C1O40_10020	COG0732	type I restriction modification DNA specificity domain
C1O40_10035	COG0732	type I restriction modification DNA specificity domain
C1O40_10045	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
C1O40_10070	COG4106	trans-aconitate 2-methyltransferase activity
C1O40_10085	COG3475	LICD family
C1O40_10090	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
C1O40_10100	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
C1O40_10105	COG3475	LICD family
C1O40_10110	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
C1O40_10120	COG2166	iron-sulfur cluster assembly
C1O40_10125	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
C1O40_10135	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
C1O40_10140	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
C1O40_10145	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
C1O40_10150	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
C1O40_10155	COG1131	(ABC) transporter
C1O40_10195	COG2967	ApaG domain
C1O40_10200	COG1401	restriction endodeoxyribonuclease activity
C1O40_10200	COG1401	restriction endodeoxyribonuclease activity
C1O40_10215	COG1522	sequence-specific DNA binding
C1O40_10220	COG0436	Aminotransferase
C1O40_10235	COG0423	glycine-tRNA ligase activity
C1O40_10240	COG0656	L-ascorbic acid biosynthetic process
C1O40_10285	COG0714	Associated with various cellular activities
C1O40_10290	COG0154	amidase activity
C1O40_10295	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
C1O40_10340	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C1O40_10355	COG2755	lipolytic protein G-D-S-L family
C1O40_10355	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
C1O40_10380	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
C1O40_10390	COG0656	L-ascorbic acid biosynthetic process
C1O40_10400	COG0667	Aldo Keto reductase
C1O40_10405	COG1408	metallophosphoesterase
C1O40_10430	COG0789	Transcriptional regulator
C1O40_10470	COG1091	dTDP-4-dehydrorhamnose reductase activity
C1O40_10485	COG1837	Belongs to the UPF0109 family
C1O40_10495	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
C1O40_10500	COG0363	glucosamine-6-phosphate deaminase activity
C1O40_10525	COG1741	Belongs to the pirin family
C1O40_10545	COG1070	Carbohydrate kinase
C1O40_10560	COG0738	Major facilitator superfamily
C1O40_10575	COG1595	DNA-templated transcription, initiation
C1O40_10600	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
C1O40_10620	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C1O40_10625	COG0232	Belongs to the dGTPase family. Type 2 subfamily
C1O40_10635	COG3586	endonuclease activity
C1O40_10645	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
C1O40_10650	COG4608	Belongs to the ABC transporter superfamily
C1O40_10655	COG0444	Belongs to the ABC transporter superfamily
C1O40_10665	COG4166	transmembrane transport
C1O40_10670	COG4239	(ABC) transporter, permease
C1O40_10675	COG0601	transmembrane transport
C1O40_10690	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
C1O40_10695	COG2759	Belongs to the formate--tetrahydrofolate ligase family
C1O40_10700	COG3738	Protein conserved in bacteria
C1O40_10705	COG0151	Belongs to the GarS family
C1O40_10720	COG0811	peptide transport
C1O40_10730	COG0242	peptide deformylase activity
C1O40_10780	COG3258	Cytochrome c
C1O40_10795	COG3274	enterobacterial common antigen metabolic process
C1O40_10800	COG0538	isocitrate dehydrogenase activity
C1O40_10815	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
C1O40_10820	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
C1O40_10825	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
C1O40_10835	COG0668	transmembrane transport
C1O40_10840	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
C1O40_10840	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
C1O40_10845	COG0805	protein transport
C1O40_10850	COG0805	protein transport
C1O40_10855	COG1968	undecaprenyl-diphosphatase activity
C1O40_10875	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
C1O40_10895	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
C1O40_10905	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
C1O40_10915	COG1408	metallophosphoesterase
C1O40_10940	COG4974	Belongs to the 'phage' integrase family
C1O40_10965	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
C1O40_10980	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
C1O40_10980	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
C1O40_10985	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
C1O40_11025	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
C1O40_11035	COG4607	ABC-type enterochelin transport system periplasmic component
C1O40_11045	COG4605	iron ion homeostasis
C1O40_11050	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C1O40_11110	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
C1O40_11115	COG2195	Cleaves the N-terminal amino acid of tripeptides
C1O40_11155	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
C1O40_11180	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
C1O40_11215	COG0646	methionine synthase
C1O40_11215	COG1410	methionine synthase
C1O40_11220	COG2966	Psort location CytoplasmicMembrane, score
C1O40_11225	COG3610	response to peptide
C1O40_11255	COG5522	Integral membrane protein (intg_mem_TP0381)
C1O40_11270	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
C1O40_11280	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
C1O40_11285	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
C1O40_11290	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
C1O40_11315	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
C1O40_11325	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
C1O40_11325	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
C1O40_11370	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
C1O40_11375	COG2818	Glycosylase
C1O40_11400	COG3033	Beta-eliminating lyase
C1O40_11420	COG0072	phenylalanine-tRNA ligase activity
C1O40_11420	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C1O40_11425	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C1O40_11425	COG0072	phenylalanine-tRNA ligase activity
C1O40_11485	COG1959	2 iron, 2 sulfur cluster binding
C1O40_11500	COG0352	thiamine-phosphate diphosphorylase activity
C1O40_11505	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
C1O40_11520	COG3525	Glycosyl hydrolase, family 20, catalytic domain
C1O40_11530	COG1703	isobutyryl-CoA mutase activity
C1O40_11550	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
C1O40_11560	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C1O40_11565	COG0418	dihydroorotase activity
C1O40_11580	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C1O40_11605	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C1O40_11620	COG0534	Mate efflux family protein
C1O40_11625	COG0489	protein tyrosine kinase activity
C1O40_11640	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
C1O40_11655	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C1O40_11665	COG1538	Outer membrane efflux protein
C1O40_11690	COG4112	unkown
C1O40_11710	COG0038	chloride channel
C1O40_11730	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
C1O40_11740	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
C1O40_11745	COG0586	Pfam SNARE associated Golgi protein
C1O40_11810	COG1518	maintenance of DNA repeat elements
C1O40_11845	COG1012	belongs to the aldehyde dehydrogenase family
C1O40_11870	COG0753	catalase activity
C1O40_11885	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
C1O40_11890	COG1592	Rubrerythrin
C1O40_11895	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C1O40_11925	COG0489	protein tyrosine kinase activity
C1O40_11935	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
C1O40_11945	COG2244	polysaccharide biosynthetic process
C1O40_11950	COG1215	transferase activity, transferring glycosyl groups
C1O40_11960	COG1216	Glycosyl transferase, family 2
C1O40_11975	COG0438	transferase activity, transferring glycosyl groups
C1O40_12005	COG1216	Glycosyl transferase, family 2
C1O40_12050	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
C1O40_12055	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C1O40_12060	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
C1O40_12065	COG0281	malic enzyme
C1O40_12065	COG0280	phosphate acetyltransferase
C1O40_12080	COG1472	Belongs to the glycosyl hydrolase 3 family
C1O40_12100	COG0635	Involved in the biosynthesis of porphyrin-containing compound
C1O40_12135	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
C1O40_12140	COG1063	alcohol dehydrogenase
C1O40_12155	COG0714	Associated with various cellular activities
C1O40_12165	COG0193	aminoacyl-tRNA hydrolase activity
C1O40_12170	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
C1O40_12185	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
C1O40_12210	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
C1O40_12225	COG0375	protein maturation
C1O40_12255	COG0778	Nitroreductase
C1O40_12260	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
C1O40_12315	COG0863	Belongs to the N(4) N(6)-methyltransferase family
C1O40_12335	COG3525	Glycosyl hydrolase, family 20, catalytic domain
C1O40_12340	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
C1O40_12385	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C1O40_12390	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C1O40_12405	COG0318	PFAM AMP-dependent synthetase and ligase
C1O40_12435	COG0339	signal peptide processing
C1O40_12445	COG0018	arginyl-trna synthetase
C1O40_12480	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
C1O40_12505	COG0494	nUDIX hydrolase