locus-tag class description CUC01_00120 PF00817 impB/mucB/samB family CUC01_00120 PF11799 impB/mucB/samB family C-terminal domain CUC01_00125 PF01641 SelR domain CUC01_00130 PF00109 Beta-ketoacyl synthase, N-terminal domain CUC01_00130 PF02801 Beta-ketoacyl synthase, C-terminal domain CUC01_00155 PF00209 Sodium:neurotransmitter symporter family CUC01_00160 PF00578 AhpC/TSA family CUC01_00160 PF10417 C-terminal domain of 1-Cys peroxiredoxin CUC01_00165 PF05552 Conserved TM helix CUC01_00165 PF00924 Mechanosensitive ion channel CUC01_00170 PF00696 Amino acid kinase family CUC01_00175 PF01765 Ribosome recycling factor CUC01_00210 PF05193 Peptidase M16 inactive domain CUC01_00210 PF00675 Insulinase (Peptidase family M16) CUC01_00225 PF01263 Aldose 1-epimerase CUC01_00235 PF00005 ABC transporter CUC01_00240 PF12849 PBP superfamily domain CUC01_00245 PF00528 Binding-protein-dependent transport system inner membrane component CUC01_00250 PF00528 Binding-protein-dependent transport system inner membrane component CUC01_00255 PF00005 ABC transporter CUC01_00260 PF01895 PhoU domain CUC01_00265 PF00291 Pyridoxal-phosphate dependent enzyme CUC01_00270 PF01507 Phosphoadenosine phosphosulfate reductase family CUC01_00275 PF01507 Phosphoadenosine phosphosulfate reductase family CUC01_00280 PF00009 Elongation factor Tu GTP binding domain CUC01_00290 PF00005 ABC transporter CUC01_00295 PF00528 Binding-protein-dependent transport system inner membrane component CUC01_00300 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CUC01_00300 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CUC01_00325 PF03781 Sulfatase-modifying factor enzyme 1 CUC01_00335 PF01136 Peptidase family U32 CUC01_00350 PF01751 Toprim domain CUC01_00350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC01_00350 PF00986 DNA gyrase B subunit, carboxyl terminus CUC01_00350 PF00204 DNA gyrase B CUC01_00365 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CUC01_00365 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CUC01_00370 PF00551 Formyl transferase CUC01_00375 PF02073 Thermophilic metalloprotease (M29) CUC01_00380 PF00149 Calcineurin-like phosphoesterase CUC01_00385 PF00999 Sodium/hydrogen exchanger family CUC01_00385 PF02254 TrkA-N domain CUC01_00430 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC01_00430 PF00085 Thioredoxin CUC01_00435 PF03315 Serine dehydratase beta chain CUC01_00435 PF03313 Serine dehydratase alpha chain CUC01_00450 PF02774 Semialdehyde dehydrogenase, dimerisation domain CUC01_00450 PF01118 Semialdehyde dehydrogenase, NAD binding domain CUC01_00455 PF00348 Polyprenyl synthetase CUC01_00460 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CUC01_00460 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CUC01_00470 PF01263 Aldose 1-epimerase CUC01_00480 PF13472 GDSL-like Lipase/Acylhydrolase family CUC01_00480 PF07859 alpha/beta hydrolase fold CUC01_00490 PF18318 Glutamine synthetase C-terminal domain CUC01_00490 PF12437 Glutamine synthetase type III N terminal CUC01_00490 PF00120 Glutamine synthetase, catalytic domain CUC01_00495 PF00468 Ribosomal protein L34 CUC01_00500 PF00825 Ribonuclease P CUC01_00505 PF01809 Putative membrane protein insertion efficiency factor CUC01_00510 PF14849 YidC periplasmic domain CUC01_00510 PF02096 60Kd inner membrane protein CUC01_00520 PF00310 Glutamine amidotransferases class-II CUC01_00520 PF04898 Glutamate synthase central domain CUC01_00520 PF01645 Conserved region in glutamate synthase CUC01_00520 PF01493 GXGXG motif CUC01_00530 PF12437 Glutamine synthetase type III N terminal CUC01_00530 PF00120 Glutamine synthetase, catalytic domain CUC01_00530 PF18318 Glutamine synthetase C-terminal domain CUC01_00535 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CUC01_00535 PF02142 MGS-like domain CUC01_00535 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUC01_00540 PF00117 Glutamine amidotransferase class-I CUC01_00540 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CUC01_00545 PF16363 GDP-mannose 4,6 dehydratase CUC01_00550 PF01370 NAD dependent epimerase/dehydratase family CUC01_00555 PF03553 Na+/H+ antiporter family CUC01_00565 PF01238 Phosphomannose isomerase type I CUC01_00575 PF02542 YgbB family CUC01_00580 PF00459 Inositol monophosphatase family CUC01_00585 PF17092 Penicillin-binding protein OB-like domain CUC01_00585 PF00912 Transglycosylase CUC01_00585 PF00905 Penicillin binding protein transpeptidase domain CUC01_00595 PF02472 Biopolymer transport protein ExbD/TolR CUC01_00600 PF01618 MotA/TolQ/ExbB proton channel family CUC01_00605 PF01541 GIY-YIG catalytic domain CUC01_00605 PF08459 UvrC Helix-hairpin-helix N-terminal CUC01_00605 PF02151 UvrB/uvrC motif CUC01_00610 PF02590 Predicted SPOUT methyltransferase CUC01_00615 PF00380 Ribosomal protein S9/S16 CUC01_00620 PF00572 Ribosomal protein L13 CUC01_00625 PF01176 Translation initiation factor 1A / IF-1 CUC01_00630 PF03853 YjeF-related protein N-terminus CUC01_00630 PF01256 Carbohydrate kinase CUC01_00635 PF04002 RadC-like JAB domain CUC01_00655 PF12169 DNA polymerase III subunits gamma and tau domain III CUC01_00660 PF02575 YbaB/EbfC DNA-binding family CUC01_00670 PF07085 DRTGG domain CUC01_00670 PF02833 DHHA2 domain CUC01_00670 PF00571 CBS domain CUC01_00670 PF01368 DHH family CUC01_00680 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CUC01_00735 PF01761 3-dehydroquinate synthase CUC01_00745 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CUC01_00755 PF13247 4Fe-4S dicluster domain CUC01_00755 PF00037 4Fe-4S binding domain CUC01_00765 PF17191 RecG wedge domain CUC01_00765 PF00271 Helicase conserved C-terminal domain CUC01_00765 PF00270 DEAD/DEAH box helicase CUC01_00770 PF01476 LysM domain CUC01_00770 PF01471 Putative peptidoglycan binding domain CUC01_00770 PF01510 N-acetylmuramoyl-L-alanine amidase CUC01_00775 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CUC01_00775 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CUC01_00785 PF01648 4'-phosphopantetheinyl transferase superfamily CUC01_00790 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CUC01_00795 PF01808 AICARFT/IMPCHase bienzyme CUC01_00795 PF02142 MGS-like domain CUC01_00800 PF03948 Ribosomal protein L9, C-terminal domain CUC01_00800 PF01281 Ribosomal protein L9, N-terminal domain CUC01_00805 PF01544 CorA-like Mg2+ transporter protein CUC01_00810 PF00696 Amino acid kinase family CUC01_00835 PF00005 ABC transporter CUC01_00840 PF13307 Helicase C-terminal domain CUC01_00840 PF06733 DEAD_2 CUC01_00850 PF00288 GHMP kinases N terminal domain CUC01_00855 PF00204 DNA gyrase B CUC01_00855 PF00986 DNA gyrase B subunit, carboxyl terminus CUC01_00855 PF01751 Toprim domain CUC01_00855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC01_00860 PF01255 Putative undecaprenyl diphosphate synthase CUC01_00865 PF00483 Nucleotidyl transferase CUC01_00865 PF01050 Mannose-6-phosphate isomerase CUC01_00870 PF03652 Holliday junction resolvase CUC01_00885 PF00830 Ribosomal L28 family CUC01_00900 PF02424 ApbE family CUC01_00910 PF03952 Enolase, N-terminal domain CUC01_00910 PF00113 Enolase, C-terminal TIM barrel domain CUC01_00920 PF00884 Sulfatase CUC01_00930 PF00392 Bacterial regulatory proteins, gntR family CUC01_00930 PF07729 FCD domain CUC01_00935 PF00005 ABC transporter CUC01_00940 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CUC01_00940 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CUC01_00955 PF01370 NAD dependent epimerase/dehydratase family CUC01_00955 PF08338 Domain of unknown function (DUF1731) CUC01_00980 PF04235 Protein of unknown function (DUF418) CUC01_00985 PF17863 AAA lid domain CUC01_00985 PF07726 ATPase family associated with various cellular activities (AAA) CUC01_00995 PF00005 ABC transporter CUC01_01025 PF01212 Beta-eliminating lyase CUC01_01035 PF13411 MerR HTH family regulatory protein CUC01_01040 PF00248 Aldo/keto reductase family CUC01_01045 PF03793 PASTA domain CUC01_01045 PF00069 Protein kinase domain CUC01_01055 PF00753 Metallo-beta-lactamase superfamily CUC01_01055 PF16123 Hydroxyacylglutathione hydrolase C-terminus CUC01_01065 PF03781 Sulfatase-modifying factor enzyme 1 CUC01_01065 PF12867 DinB superfamily CUC01_01075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC01_01075 PF00512 His Kinase A (phospho-acceptor) domain CUC01_01075 PF13493 Domain of unknown function (DUF4118) CUC01_01075 PF02702 Osmosensitive K+ channel His kinase sensor domain CUC01_01075 PF13492 GAF domain CUC01_01080 PF02669 K+-transporting ATPase, c chain CUC01_01090 PF03814 Potassium-transporting ATPase A subunit CUC01_01125 PF05593 RHS Repeat CUC01_01125 PF03527 RHS protein CUC01_01125 PF14220 Domain of unknown function (DUF4329) CUC01_01170 PF13539 D-alanyl-D-alanine carboxypeptidase CUC01_01185 PF02386 Cation transport protein CUC01_01190 PF01554 MatE CUC01_01215 PF00398 Ribosomal RNA adenine dimethylase CUC01_01220 PF01370 NAD dependent epimerase/dehydratase family CUC01_01255 PF00884 Sulfatase CUC01_01280 PF00920 Dehydratase family CUC01_01285 PF00486 Transcriptional regulatory protein, C terminal CUC01_01285 PF00072 Response regulator receiver domain CUC01_01290 PF00672 HAMP domain CUC01_01290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC01_01290 PF00512 His Kinase A (phospho-acceptor) domain CUC01_01290 PF13426 PAS domain CUC01_01310 PF01634 ATP phosphoribosyltransferase CUC01_01310 PF08029 HisG, C-terminal domain CUC01_01315 PF00557 Metallopeptidase family M24 CUC01_01315 PF05195 Aminopeptidase P, N-terminal domain CUC01_01325 PF01790 Prolipoprotein diacylglyceryl transferase CUC01_01330 PF05343 M42 glutamyl aminopeptidase CUC01_01355 PF00263 Bacterial type II and III secretion system protein CUC01_01355 PF03958 Bacterial type II/III secretion system short domain CUC01_01360 PF01121 Dephospho-CoA kinase CUC01_01365 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUC01_01365 PF07498 Rho termination factor, N-terminal domain CUC01_01365 PF07497 Rho termination factor, RNA-binding domain CUC01_01370 PF00403 Heavy-metal-associated domain CUC01_01375 PF00480 ROK family CUC01_01380 PF14437 MafB19-like deaminase CUC01_01385 PF04055 Radical SAM superfamily CUC01_01385 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CUC01_01390 PF00034 Cytochrome c CUC01_01390 PF03150 Di-haem cytochrome c peroxidase CUC01_01390 PF14376 Haem-binding domain CUC01_01405 PF17910 FeoB cytosolic helical domain CUC01_01405 PF02421 Ferrous iron transport protein B CUC01_01405 PF07670 Nucleoside recognition CUC01_01405 PF07664 Ferrous iron transport protein B C terminus CUC01_01450 PF08032 RNA 2'-O ribose methyltransferase substrate binding CUC01_01450 PF00588 SpoU rRNA Methylase family CUC01_01455 PF00890 FAD binding domain CUC01_01455 PF02910 Fumarate reductase flavoprotein C-term CUC01_01465 PF00534 Glycosyl transferases group 1 CUC01_01475 PF16124 RecQ zinc-binding CUC01_01475 PF00570 HRDC domain CUC01_01475 PF00271 Helicase conserved C-terminal domain CUC01_01475 PF00270 DEAD/DEAH box helicase CUC01_01475 PF09382 RQC domain CUC01_01480 PF16347 Domain of unknown function (DUF4976) CUC01_01480 PF00884 Sulfatase CUC01_01490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CUC01_01510 PF05221 S-adenosyl-L-homocysteine hydrolase CUC01_01510 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CUC01_01515 PF02772 S-adenosylmethionine synthetase, central domain CUC01_01515 PF00438 S-adenosylmethionine synthetase, N-terminal domain CUC01_01515 PF02773 S-adenosylmethionine synthetase, C-terminal domain CUC01_01520 PF13649 Methyltransferase domain CUC01_01565 PF00873 AcrB/AcrD/AcrF family CUC01_01585 PF02219 Methylenetetrahydrofolate reductase CUC01_01595 PF07244 Surface antigen variable number repeat CUC01_01595 PF01103 Surface antigen CUC01_01600 PF05697 Bacterial trigger factor protein (TF) CUC01_01600 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CUC01_01600 PF05698 Bacterial trigger factor protein (TF) C-terminus CUC01_01605 PF00574 Clp protease CUC01_01610 PF07724 AAA domain (Cdc48 subfamily) CUC01_01610 PF06689 ClpX C4-type zinc finger CUC01_01610 PF10431 C-terminal, D2-small domain, of ClpB protein CUC01_01615 PF00814 Glycoprotease family CUC01_01625 PF03143 Elongation factor Tu C-terminal domain CUC01_01625 PF03144 Elongation factor Tu domain 2 CUC01_01625 PF00009 Elongation factor Tu GTP binding domain CUC01_01640 PF02357 Transcription termination factor nusG CUC01_01640 PF00467 KOW motif CUC01_01645 PF03946 Ribosomal protein L11, N-terminal domain CUC01_01645 PF00298 Ribosomal protein L11, RNA binding domain CUC01_01650 PF00687 Ribosomal protein L1p/L10e family CUC01_01655 PF00466 Ribosomal protein L10 CUC01_01660 PF16320 Ribosomal protein L7/L12 dimerisation domain CUC01_01660 PF00542 Ribosomal protein L7/L12 C-terminal domain CUC01_01665 PF10385 RNA polymerase beta subunit external 1 domain CUC01_01665 PF04560 RNA polymerase Rpb2, domain 7 CUC01_01665 PF04565 RNA polymerase Rpb2, domain 3 CUC01_01665 PF04561 RNA polymerase Rpb2, domain 2 CUC01_01665 PF04563 RNA polymerase beta subunit CUC01_01665 PF00562 RNA polymerase Rpb2, domain 6 CUC01_01670 PF04998 RNA polymerase Rpb1, domain 5 CUC01_01670 PF05000 RNA polymerase Rpb1, domain 4 CUC01_01670 PF04983 RNA polymerase Rpb1, domain 3 CUC01_01670 PF00623 RNA polymerase Rpb1, domain 2 CUC01_01670 PF04997 RNA polymerase Rpb1, domain 1 CUC01_01685 PF00679 Elongation factor G C-terminus CUC01_01685 PF00009 Elongation factor Tu GTP binding domain CUC01_01685 PF03144 Elongation factor Tu domain 2 CUC01_01685 PF06421 GTP-binding protein LepA C-terminus CUC01_01695 PF16347 Domain of unknown function (DUF4976) CUC01_01695 PF00884 Sulfatase CUC01_01700 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC01_01700 PF02838 Glycosyl hydrolase family 20, domain 2 CUC01_01705 PF01406 tRNA synthetases class I (C) catalytic domain CUC01_01705 PF09190 DALR domain CUC01_01715 PF00892 EamA-like transporter family CUC01_01725 PF12848 ABC transporter CUC01_01725 PF16326 ABC transporter C-terminal domain CUC01_01725 PF00005 ABC transporter CUC01_01730 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CUC01_01770 PF01914 MarC family integral membrane protein CUC01_01775 PF00561 alpha/beta hydrolase fold CUC01_01810 PF04397 LytTr DNA-binding domain CUC01_01810 PF00072 Response regulator receiver domain CUC01_01820 PF16338 Domain of unknown function (DUF4968) CUC01_01820 PF01055 Glycosyl hydrolases family 31 CUC01_01820 PF17137 Domain of unknown function (DUF5110) CUC01_01820 PF13802 Galactose mutarotase-like CUC01_01840 PF12146 Serine aminopeptidase, S33 CUC01_01855 PF01595 Cyclin M transmembrane N-terminal domain CUC01_01855 PF00571 CBS domain CUC01_01855 PF03471 Transporter associated domain CUC01_01870 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CUC01_01870 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CUC01_01880 PF16326 ABC transporter C-terminal domain CUC01_01880 PF12848 ABC transporter CUC01_01880 PF00005 ABC transporter CUC01_01940 PF00890 FAD binding domain CUC01_01940 PF02910 Fumarate reductase flavoprotein C-term CUC01_01945 PF13085 2Fe-2S iron-sulfur cluster binding domain CUC01_01975 PF02580 D-Tyr-tRNA(Tyr) deacylase CUC01_01990 PF00550 Phosphopantetheine attachment site CUC01_01995 PF03309 Type III pantothenate kinase CUC01_02000 PF04101 Glycosyltransferase family 28 C-terminal domain CUC01_02000 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase CUC01_02005 PF02911 Formyl transferase, C-terminal domain CUC01_02005 PF00551 Formyl transferase CUC01_02010 PF00580 UvrD/REP helicase N-terminal domain CUC01_02010 PF13361 UvrD-like helicase C-terminal domain CUC01_02015 PF00474 Sodium:solute symporter family CUC01_02020 PF00288 GHMP kinases N terminal domain CUC01_02020 PF08544 GHMP kinases C terminal CUC01_02020 PF10509 Galactokinase galactose-binding signature CUC01_02025 PF02397 Bacterial sugar transferase CUC01_02030 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CUC01_02050 PF00005 ABC transporter CUC01_02050 PF00498 FHA domain CUC01_02050 PF01061 ABC-2 type transporter CUC01_02060 PF04015 Domain of unknown function (DUF362) CUC01_02065 PF06962 Putative rRNA methylase CUC01_02070 PF01725 Ham1 family CUC01_02075 PF03372 Endonuclease/Exonuclease/phosphatase family CUC01_02080 PF13184 NusA-like KH domain CUC01_02080 PF00575 S1 RNA binding domain CUC01_02080 PF08529 NusA N-terminal domain CUC01_02085 PF04760 Translation initiation factor IF-2, N-terminal region CUC01_02085 PF00009 Elongation factor Tu GTP binding domain CUC01_02085 PF11987 Translation-initiation factor 2 CUC01_02090 PF02033 Ribosome-binding factor A CUC01_02095 PF00884 Sulfatase CUC01_02105 PF02554 Carbon starvation protein CstA CUC01_02115 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CUC01_02120 PF01979 Amidohydrolase family CUC01_02125 PF00364 Biotin-requiring enzyme CUC01_02125 PF02817 e3 binding domain CUC01_02125 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CUC01_02130 PF01965 DJ-1/PfpI family CUC01_02135 PF00535 Glycosyl transferase family 2 CUC01_02150 PF00535 Glycosyl transferase family 2 CUC01_02155 PF01531 Glycosyl transferase family 11 CUC01_02160 PF00535 Glycosyl transferase family 2 CUC01_02170 PF01501 Glycosyl transferase family 8 CUC01_02175 PF17941 Polyphosphate kinase C-terminal domain 1 CUC01_02175 PF02503 Polyphosphate kinase middle domain CUC01_02175 PF13090 Polyphosphate kinase C-terminal domain 2 CUC01_02175 PF13089 Polyphosphate kinase N-terminal domain CUC01_02190 PF00557 Metallopeptidase family M24 CUC01_02195 PF05191 Adenylate kinase, active site lid CUC01_02200 PF00344 SecY translocase CUC01_02205 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CUC01_02210 PF03719 Ribosomal protein S5, C-terminal domain CUC01_02210 PF00333 Ribosomal protein S5, N-terminal domain CUC01_02215 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CUC01_02220 PF00347 Ribosomal protein L6 CUC01_02225 PF00410 Ribosomal protein S8 CUC01_02230 PF00281 Ribosomal protein L5 CUC01_02230 PF00673 ribosomal L5P family C-terminus CUC01_02235 PF00467 KOW motif CUC01_02235 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CUC01_02240 PF01513 ATP-NAD kinase CUC01_02245 PF05036 Sporulation related domain CUC01_02245 PF03330 Lytic transglycolase CUC01_02250 PF02872 5'-nucleotidase, C-terminal domain CUC01_02250 PF00149 Calcineurin-like phosphoesterase CUC01_02255 PF12419 SNF2 Helicase protein CUC01_02255 PF00271 Helicase conserved C-terminal domain CUC01_02255 PF00176 SNF2 family N-terminal domain CUC01_02260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CUC01_02275 PF08245 Mur ligase middle domain CUC01_02275 PF02875 Mur ligase family, glutamate ligase domain CUC01_02280 PF01136 Peptidase family U32 CUC01_02280 PF12392 Collagenase CUC01_02290 PF00773 RNB domain CUC01_02290 PF00575 S1 RNA binding domain CUC01_02290 PF08206 Ribonuclease B OB domain CUC01_02290 PF17876 Cold shock domain CUC01_02300 PF01923 Cobalamin adenosyltransferase CUC01_02310 PF07690 Major Facilitator Superfamily CUC01_02320 PF01139 tRNA-splicing ligase RtcB CUC01_02335 PF01641 SelR domain CUC01_02335 PF01625 Peptide methionine sulfoxide reductase CUC01_02345 PF00330 Aconitase family (aconitate hydratase) CUC01_02345 PF00694 Aconitase C-terminal domain CUC01_02350 PF01476 LysM domain CUC01_02350 PF01510 N-acetylmuramoyl-L-alanine amidase CUC01_02350 PF01471 Putative peptidoglycan binding domain CUC01_02370 PF01751 Toprim domain CUC01_02370 PF01131 DNA topoisomerase CUC01_02410 PF00873 AcrB/AcrD/AcrF family CUC01_02415 PF00529 HlyD membrane-fusion protein of T1SS CUC01_02415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC01_02420 PF13411 MerR HTH family regulatory protein CUC01_02430 PF02780 Transketolase, C-terminal domain CUC01_02430 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CUC01_02430 PF02779 Transketolase, pyrimidine binding domain CUC01_02435 PF02780 Transketolase, C-terminal domain CUC01_02435 PF02779 Transketolase, pyrimidine binding domain CUC01_02440 PF02817 e3 binding domain CUC01_02440 PF00364 Biotin-requiring enzyme CUC01_02440 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CUC01_02470 PF03808 Glycosyl transferase WecB/TagA/CpsF family CUC01_02475 PF12706 Beta-lactamase superfamily domain CUC01_02475 PF03099 Biotin/lipoate A/B protein ligase family CUC01_02480 PF02463 RecF/RecN/SMC N terminal domain CUC01_02485 PF00403 Heavy-metal-associated domain CUC01_02490 PF00722 Glycosyl hydrolases family 16 CUC01_02495 PF09285 Elongation factor P, C-terminal CUC01_02495 PF01132 Elongation factor P (EF-P) OB domain CUC01_02495 PF08207 Elongation factor P (EF-P) KOW-like domain CUC01_02505 PF00202 Aminotransferase class-III CUC01_02510 PF01741 Large-conductance mechanosensitive channel, MscL CUC01_02515 PF00245 Alkaline phosphatase CUC01_02520 PF07691 PA14 domain CUC01_02520 PF02838 Glycosyl hydrolase family 20, domain 2 CUC01_02520 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC01_02525 PF05343 M42 glutamyl aminopeptidase CUC01_02535 PF02915 Rubrerythrin CUC01_02545 PF00884 Sulfatase CUC01_02545 PF08019 Phosphoethanolamine transferase EptA/EptB CUC01_02575 PF00939 Sodium:sulfate symporter transmembrane region CUC01_02580 PF00989 PAS fold CUC01_02580 PF00512 His Kinase A (phospho-acceptor) domain CUC01_02580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC01_02590 PF02080 TrkA-C domain CUC01_02590 PF06826 Predicted Permease Membrane Region CUC01_02595 PF16874 Glycosyl hydrolase family 36 C-terminal domain CUC01_02595 PF16875 Glycosyl hydrolase family 36 N-terminal domain CUC01_02600 PF00216 Bacterial DNA-binding protein CUC01_02620 PF05958 tRNA (Uracil-5-)-methyltransferase CUC01_02620 PF01938 TRAM domain CUC01_02625 PF00919 Uncharacterized protein family UPF0004 CUC01_02625 PF01938 TRAM domain CUC01_02625 PF04055 Radical SAM superfamily CUC01_02635 PF01966 HD domain CUC01_02635 PF01336 OB-fold nucleic acid binding domain CUC01_02640 PF02973 Sialidase, N-terminal domain CUC01_02640 PF00754 F5/8 type C domain CUC01_02640 PF13088 BNR repeat-like domain CUC01_02645 PF01261 Xylose isomerase-like TIM barrel CUC01_02650 PF00113 Enolase, C-terminal TIM barrel domain CUC01_02650 PF03952 Enolase, N-terminal domain CUC01_02665 PF00206 Lyase CUC01_02665 PF14698 Argininosuccinate lyase C-terminal CUC01_02670 PF01740 STAS domain CUC01_02670 PF00916 Sulfate permease family CUC01_02680 PF03477 ATP cone domain CUC01_02730 PF10431 C-terminal, D2-small domain, of ClpB protein CUC01_02730 PF00004 ATPase family associated with various cellular activities (AAA) CUC01_02730 PF02861 Clp amino terminal domain, pathogenicity island component CUC01_02730 PF07724 AAA domain (Cdc48 subfamily) CUC01_02730 PF17871 AAA lid domain CUC01_02750 PF02669 K+-transporting ATPase, c chain CUC01_02760 PF03814 Potassium-transporting ATPase A subunit CUC01_02770 PF00072 Response regulator receiver domain CUC01_02770 PF00486 Transcriptional regulatory protein, C terminal CUC01_02775 PF00512 His Kinase A (phospho-acceptor) domain CUC01_02775 PF02702 Osmosensitive K+ channel His kinase sensor domain CUC01_02775 PF13493 Domain of unknown function (DUF4118) CUC01_02775 PF13492 GAF domain CUC01_02775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC01_02790 PF02837 Glycosyl hydrolases family 2, sugar binding domain CUC01_02790 PF02929 Beta galactosidase small chain CUC01_02790 PF16353 Domain of unknown function(DUF4981) CUC01_02790 PF00703 Glycosyl hydrolases family 2 CUC01_02790 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CUC01_02800 PF01026 TatD related DNase CUC01_02805 PF00877 NlpC/P60 family CUC01_02805 PF01476 LysM domain CUC01_02830 PF00712 DNA polymerase III beta subunit, N-terminal domain CUC01_02830 PF02768 DNA polymerase III beta subunit, C-terminal domain CUC01_02830 PF02767 DNA polymerase III beta subunit, central domain CUC01_02840 PF00132 Bacterial transferase hexapeptide (six repeats) CUC01_02840 PF14602 Hexapeptide repeat of succinyl-transferase CUC01_02840 PF12804 MobA-like NTP transferase domain CUC01_02845 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CUC01_02845 PF01872 RibD C-terminal domain CUC01_02850 PF13932 GidA associated domain CUC01_02850 PF01134 Glucose inhibited division protein A CUC01_02860 PF13180 PDZ domain CUC01_02860 PF00595 PDZ domain CUC01_02865 PF10369 Small subunit of acetolactate synthase CUC01_02870 PF00270 DEAD/DEAH box helicase CUC01_02870 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CUC01_02870 PF11898 Domain of unknown function (DUF3418) CUC01_02870 PF00271 Helicase conserved C-terminal domain CUC01_02870 PF04408 Helicase associated domain (HA2) CUC01_02880 PF02386 Cation transport protein CUC01_02890 PF00977 Histidine biosynthesis protein CUC01_02900 PF01638 HxlR-like helix-turn-helix CUC01_02920 PF00152 tRNA synthetases class II (D, K and N) CUC01_02920 PF01336 OB-fold nucleic acid binding domain CUC01_02930 PF02660 Glycerol-3-phosphate acyltransferase CUC01_02935 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CUC01_02935 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CUC01_02950 PF04055 Radical SAM superfamily CUC01_02950 PF13186 Iron-sulfur cluster-binding domain CUC01_02960 PF01053 Cys/Met metabolism PLP-dependent enzyme CUC01_02970 PF01078 Magnesium chelatase, subunit ChlI CUC01_02970 PF13335 Magnesium chelatase, subunit ChlI C-terminal CUC01_02985 PF00180 Isocitrate/isopropylmalate dehydrogenase CUC01_02995 PF11922 Domain of unknown function (DUF3440) CUC01_02995 PF01507 Phosphoadenosine phosphosulfate reductase family CUC01_03000 PF02195 ParB-like nuclease domain CUC01_03015 PF00565 Staphylococcal nuclease homologue CUC01_03035 PF03061 Thioesterase superfamily CUC01_03040 PF07690 Major Facilitator Superfamily CUC01_03045 PF01757 Acyltransferase family CUC01_03050 PF00300 Histidine phosphatase superfamily (branch 1) CUC01_03055 PF01301 Glycosyl hydrolases family 35 CUC01_03105 PF01757 Acyltransferase family CUC01_03125 PF00535 Glycosyl transferase family 2 CUC01_03130 PF01370 NAD dependent epimerase/dehydratase family CUC01_03140 PF00535 Glycosyl transferase family 2 CUC01_03140 PF01501 Glycosyl transferase family 8 CUC01_03145 PF08759 Glycosyltransferase GT-D fold CUC01_03145 PF01501 Glycosyl transferase family 8 CUC01_03150 PF00149 Calcineurin-like phosphoesterase CUC01_03165 PF01509 TruB family pseudouridylate synthase (N terminal domain) CUC01_03165 PF16198 tRNA pseudouridylate synthase B C-terminal domain CUC01_03170 PF01687 Riboflavin kinase CUC01_03170 PF06574 FAD synthetase CUC01_03175 PF02261 Aspartate decarboxylase CUC01_03185 PF07963 Prokaryotic N-terminal methylation motif CUC01_03185 PF00114 Pilin (bacterial filament) CUC01_03190 PF00793 DAHP synthetase I family CUC01_03210 PF13419 Haloacid dehalogenase-like hydrolase CUC01_03215 PF14602 Hexapeptide repeat of succinyl-transferase CUC01_03215 PF12464 Maltose acetyltransferase CUC01_03220 PF02540 NAD synthase CUC01_03220 PF00958 GMP synthase C terminal domain CUC01_03220 PF00117 Glutamine amidotransferase class-I CUC01_03225 PF00478 IMP dehydrogenase / GMP reductase domain CUC01_03225 PF00571 CBS domain CUC01_03230 PF01451 Low molecular weight phosphotyrosine protein phosphatase CUC01_03260 PF01636 Phosphotransferase enzyme family CUC01_03265 PF01926 50S ribosome-binding GTPase CUC01_03265 PF01018 GTP1/OBG CUC01_03285 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CUC01_03285 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CUC01_03290 PF00722 Glycosyl hydrolases family 16 CUC01_03295 PF01063 Amino-transferase class IV CUC01_03305 PF01116 Fructose-bisphosphate aldolase class-II CUC01_03310 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CUC01_03310 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CUC01_03315 PF01594 AI-2E family transporter CUC01_03325 PF13520 Amino acid permease CUC01_03330 PF05690 Thiazole biosynthesis protein ThiG CUC01_03340 PF12127 SigmaW regulon antibacterial CUC01_03345 PF02547 Queuosine biosynthesis protein CUC01_03355 PF02254 TrkA-N domain CUC01_03355 PF00999 Sodium/hydrogen exchanger family CUC01_03360 PF16916 Dimerisation domain of Zinc Transporter CUC01_03360 PF01545 Cation efflux family CUC01_03365 PF01709 Transcriptional regulator CUC01_03370 PF07498 Rho termination factor, N-terminal domain CUC01_03370 PF07497 Rho termination factor, RNA-binding domain CUC01_03370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUC01_03375 PF04055 Radical SAM superfamily CUC01_03385 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CUC01_03385 PF01842 ACT domain CUC01_03385 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CUC01_03400 PF00266 Aminotransferase class-V CUC01_03410 PF03601 Conserved hypothetical protein 698 CUC01_03415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC01_03415 PF03466 LysR substrate binding domain CUC01_03465 PF00085 Thioredoxin CUC01_03475 PF00152 tRNA synthetases class II (D, K and N) CUC01_03475 PF01336 OB-fold nucleic acid binding domain CUC01_03490 PF00005 ABC transporter CUC01_03490 PF17760 UvrA interaction domain CUC01_03490 PF17755 UvrA DNA-binding domain CUC01_03500 PF01638 HxlR-like helix-turn-helix CUC01_03505 PF00580 UvrD/REP helicase N-terminal domain CUC01_03505 PF13361 UvrD-like helicase C-terminal domain CUC01_03510 PF00691 OmpA family CUC01_03515 PF02875 Mur ligase family, glutamate ligase domain CUC01_03515 PF01225 Mur ligase family, catalytic domain CUC01_03515 PF08245 Mur ligase middle domain CUC01_03525 PF00005 ABC transporter CUC01_03525 PF12399 Branched-chain amino acid ATP-binding cassette transporter CUC01_03540 PF00793 DAHP synthetase I family CUC01_03555 PF00889 Elongation factor TS CUC01_03565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC01_03565 PF00005 ABC transporter CUC01_03575 PF01761 3-dehydroquinate synthase CUC01_03585 PF13180 PDZ domain CUC01_03585 PF17820 PDZ domain CUC01_03595 PF00694 Aconitase C-terminal domain CUC01_03600 PF00330 Aconitase family (aconitate hydratase) CUC01_03605 PF03099 Biotin/lipoate A/B protein ligase family CUC01_03610 PF01520 N-acetylmuramoyl-L-alanine amidase CUC01_03615 PF00154 recA bacterial DNA recombination protein CUC01_03625 PF07478 D-ala D-ala ligase C-terminus CUC01_03625 PF01820 D-ala D-ala ligase N-terminus CUC01_03630 PF01225 Mur ligase family, catalytic domain CUC01_03630 PF02875 Mur ligase family, glutamate ligase domain CUC01_03630 PF08245 Mur ligase middle domain CUC01_03635 PF03033 Glycosyltransferase family 28 N-terminal domain CUC01_03635 PF04101 Glycosyltransferase family 28 C-terminal domain CUC01_03640 PF01098 Cell cycle protein CUC01_03655 PF08245 Mur ligase middle domain CUC01_03655 PF02875 Mur ligase family, glutamate ligase domain CUC01_03660 PF00953 Glycosyl transferase family 4 CUC01_03660 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CUC01_03665 PF01225 Mur ligase family, catalytic domain CUC01_03665 PF02875 Mur ligase family, glutamate ligase domain CUC01_03665 PF08245 Mur ligase middle domain CUC01_03670 PF02875 Mur ligase family, glutamate ligase domain CUC01_03670 PF08245 Mur ligase middle domain CUC01_03670 PF01225 Mur ligase family, catalytic domain CUC01_03675 PF03793 PASTA domain CUC01_03675 PF03717 Penicillin-binding Protein dimerisation domain CUC01_03675 PF00905 Penicillin binding protein transpeptidase domain CUC01_03680 PF00905 Penicillin binding protein transpeptidase domain CUC01_03680 PF03717 Penicillin-binding Protein dimerisation domain CUC01_03690 PF01795 MraW methylase family CUC01_03695 PF02381 MraZ protein, putative antitoxin-like CUC01_03700 PF10996 Beta-Casp domain CUC01_03700 PF00753 Metallo-beta-lactamase superfamily CUC01_03700 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CUC01_03705 PF03458 UPF0126 domain CUC01_03715 PF01926 50S ribosome-binding GTPase CUC01_03715 PF10396 GTP-binding protein TrmE N-terminus CUC01_03715 PF12631 MnmE helical domain CUC01_03740 PF01757 Acyltransferase family CUC01_03750 PF00534 Glycosyl transferases group 1 CUC01_03775 PF00535 Glycosyl transferase family 2 CUC01_03780 PF00535 Glycosyl transferase family 2 CUC01_03790 PF00258 Flavodoxin CUC01_03790 PF00175 Oxidoreductase NAD-binding domain CUC01_03790 PF00667 FAD binding domain CUC01_03795 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CUC01_03795 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CUC01_03800 PF05491 RuvB C-terminal winged helix domain CUC01_03800 PF05496 Holliday junction DNA helicase RuvB P-loop domain CUC01_03800 PF17864 RuvB AAA lid domain CUC01_03840 PF13859 BNR repeat-like domain CUC01_03850 PF00893 Small Multidrug Resistance protein CUC01_03855 PF00795 Carbon-nitrogen hydrolase CUC01_03855 PF02540 NAD synthase CUC01_03860 PF08241 Methyltransferase domain CUC01_03875 PF02142 MGS-like domain CUC01_03875 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CUC01_03875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUC01_03890 PF09115 DNA polymerase III, delta subunit, C terminal CUC01_03895 PF01502 Phosphoribosyl-AMP cyclohydrolase CUC01_03915 PF03372 Endonuclease/Exonuclease/phosphatase family CUC01_03950 PF00589 Phage integrase family CUC01_03950 PF02899 Phage integrase, N-terminal SAM-like domain CUC01_03960 PF00035 Double-stranded RNA binding motif CUC01_03960 PF14622 Ribonuclease-III-like CUC01_03970 PF02463 RecF/RecN/SMC N terminal domain CUC01_03980 PF02224 Cytidylate kinase CUC01_03990 PF02769 AIR synthase related protein, C-terminal domain CUC01_03990 PF00586 AIR synthase related protein, N-terminal domain CUC01_04005 PF00069 Protein kinase domain CUC01_04005 PF03793 PASTA domain CUC01_04010 PF13167 GTP-binding GTPase N-terminal CUC01_04010 PF01926 50S ribosome-binding GTPase CUC01_04010 PF16360 GTP-binding GTPase Middle Region CUC01_04015 PF02545 Maf-like protein CUC01_04020 PF00585 C-terminal regulatory domain of Threonine dehydratase CUC01_04020 PF00291 Pyridoxal-phosphate dependent enzyme CUC01_04040 PF03734 L,D-transpeptidase catalytic domain CUC01_04045 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain CUC01_04045 PF01118 Semialdehyde dehydrogenase, NAD binding domain CUC01_04075 PF00675 Insulinase (Peptidase family M16) CUC01_04075 PF05193 Peptidase M16 inactive domain CUC01_04080 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CUC01_04090 PF01612 3'-5' exonuclease CUC01_04090 PF00570 HRDC domain CUC01_04100 PF03819 MazG nucleotide pyrophosphohydrolase domain CUC01_04130 PF00884 Sulfatase CUC01_04145 PF00121 Triosephosphate isomerase CUC01_04150 PF01029 NusB family CUC01_04150 PF01189 16S rRNA methyltransferase RsmB/F CUC01_04160 PF00884 Sulfatase CUC01_04165 PF00764 Arginosuccinate synthase CUC01_04180 PF00253 Ribosomal protein S14p/S29e CUC01_04190 PF01595 Cyclin M transmembrane N-terminal domain CUC01_04190 PF00571 CBS domain CUC01_04190 PF03471 Transporter associated domain CUC01_04195 PF01351 Ribonuclease HII CUC01_04200 PF02021 Uncharacterised protein family UPF0102 CUC01_04210 PF00218 Indole-3-glycerol phosphate synthase CUC01_04230 PF00730 HhH-GPD superfamily base excision DNA repair protein CUC01_04245 PF02472 Biopolymer transport protein ExbD/TolR CUC01_04270 PF00575 S1 RNA binding domain CUC01_04270 PF10150 Ribonuclease E/G family CUC01_04280 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CUC01_04280 PF02837 Glycosyl hydrolases family 2, sugar binding domain CUC01_04280 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CUC01_04280 PF00703 Glycosyl hydrolases family 2 CUC01_04290 PF05343 M42 glutamyl aminopeptidase CUC01_04305 PF02769 AIR synthase related protein, C-terminal domain CUC01_04305 PF00586 AIR synthase related protein, N-terminal domain CUC01_04305 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CUC01_04315 PF01259 SAICAR synthetase CUC01_04320 PF03449 Transcription elongation factor, N-terminal CUC01_04320 PF01272 Transcription elongation factor, GreA/GreB, C-term CUC01_04325 PF02779 Transketolase, pyrimidine binding domain CUC01_04325 PF02780 Transketolase, C-terminal domain CUC01_04325 PF00456 Transketolase, thiamine diphosphate binding domain CUC01_04335 PF01472 PUA domain CUC01_04335 PF00696 Amino acid kinase family CUC01_04340 PF00171 Aldehyde dehydrogenase family CUC01_04365 PF00571 CBS domain CUC01_04365 PF01380 SIS domain CUC01_04370 PF00899 ThiF family CUC01_04415 PF00905 Penicillin binding protein transpeptidase domain CUC01_04415 PF03717 Penicillin-binding Protein dimerisation domain CUC01_04425 PF00119 ATP synthase A chain CUC01_04430 PF00137 ATP synthase subunit C CUC01_04435 PF00430 ATP synthase B/B' CF(0) CUC01_04440 PF00213 ATP synthase delta (OSCP) subunit CUC01_04445 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUC01_04445 PF02874 ATP synthase alpha/beta family, beta-barrel domain CUC01_04445 PF00306 ATP synthase alpha/beta chain, C terminal domain CUC01_04450 PF00231 ATP synthase CUC01_04455 PF02874 ATP synthase alpha/beta family, beta-barrel domain CUC01_04455 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUC01_04460 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CUC01_04460 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CUC01_04480 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CUC01_04490 PF00535 Glycosyl transferase family 2 CUC01_04520 PF00202 Aminotransferase class-III CUC01_04525 PF06968 Biotin and Thiamin Synthesis associated domain CUC01_04525 PF04055 Radical SAM superfamily CUC01_04530 PF00884 Sulfatase CUC01_04545 PF01458 Uncharacterized protein family (UPF0051) CUC01_04550 PF01458 Uncharacterized protein family (UPF0051) CUC01_04555 PF00005 ABC transporter CUC01_04560 PF01475 Ferric uptake regulator family CUC01_04565 PF01016 Ribosomal L27 protein CUC01_04575 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CUC01_04580 PF12146 Serine aminopeptidase, S33 CUC01_04590 PF08305 NPCBM/NEW2 domain CUC01_04605 PF03976 Polyphosphate kinase 2 (PPK2) CUC01_04640 PF03193 RsgA GTPase CUC01_04645 PF04127 DNA / pantothenate metabolism flavoprotein CUC01_04645 PF02441 Flavoprotein CUC01_04650 PF00266 Aminotransferase class-V CUC01_04660 PF08220 DeoR-like helix-turn-helix domain CUC01_04660 PF00455 DeoR C terminal sensor domain CUC01_04665 PF03976 Polyphosphate kinase 2 (PPK2) CUC01_04685 PF02441 Flavoprotein CUC01_04715 PF08281 Sigma-70, region 4 CUC01_04715 PF04542 Sigma-70 region 2 CUC01_04720 PF00156 Phosphoribosyl transferase domain CUC01_04725 PF02769 AIR synthase related protein, C-terminal domain CUC01_04725 PF00586 AIR synthase related protein, N-terminal domain CUC01_04730 PF07681 DoxX CUC01_04750 PF03880 DbpA RNA binding domain CUC01_04750 PF00271 Helicase conserved C-terminal domain CUC01_04750 PF00270 DEAD/DEAH box helicase CUC01_04760 PF00884 Sulfatase CUC01_04760 PF16385 Domain of unknown function CUC01_04775 PF02347 Glycine cleavage system P-protein CUC01_04780 PF01597 Glycine cleavage H-protein CUC01_04790 PF01926 50S ribosome-binding GTPase CUC01_04790 PF06071 Protein of unknown function (DUF933) CUC01_04795 PF00768 D-alanyl-D-alanine carboxypeptidase CUC01_04795 PF07943 Penicillin-binding protein 5, C-terminal domain CUC01_04800 PF02481 DNA recombination-mediator protein A CUC01_04800 PF17782 DprA winged helix domain CUC01_04815 PF08331 Domain of unknown function (DUF1730) CUC01_04820 PF00416 Ribosomal protein S13/S18 CUC01_04825 PF00411 Ribosomal protein S11 CUC01_04830 PF01479 S4 domain CUC01_04830 PF00163 Ribosomal protein S4/S9 N-terminal domain CUC01_04855 PF00583 Acetyltransferase (GNAT) family CUC01_04860 PF00391 PEP-utilising enzyme, mobile domain CUC01_04860 PF00224 Pyruvate kinase, barrel domain CUC01_04860 PF02887 Pyruvate kinase, alpha/beta domain CUC01_04865 PF00994 Probable molybdopterin binding domain CUC01_04865 PF18146 Damage-inducible protein CinA KH domain CUC01_04865 PF02464 Competence-damaged protein CUC01_04870 PF04191 Phospholipid methyltransferase CUC01_04880 PF03796 DnaB-like helicase C terminal domain CUC01_04880 PF00772 DnaB-like helicase N terminal domain CUC01_04885 PF04055 Radical SAM superfamily CUC01_04890 PF00448 SRP54-type protein, GTPase domain CUC01_04890 PF02881 SRP54-type protein, helical bundle domain CUC01_04895 PF01029 NusB family CUC01_04900 PF00885 6,7-dimethyl-8-ribityllumazine synthase CUC01_04905 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CUC01_04905 PF00925 GTP cyclohydrolase II CUC01_04910 PF00749 tRNA synthetases class I (E and Q), catalytic domain CUC01_04910 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CUC01_04925 PF00083 Sugar (and other) transporter CUC01_04940 PF00202 Aminotransferase class-III CUC01_04945 PF01165 Ribosomal protein S21 CUC01_04955 PF01467 Cytidylyltransferase-like CUC01_04955 PF00294 pfkB family carbohydrate kinase CUC01_04960 PF13580 SIS domain CUC01_04990 PF00005 ABC transporter CUC01_04995 PF00528 Binding-protein-dependent transport system inner membrane component CUC01_05000 PF00132 Bacterial transferase hexapeptide (six repeats) CUC01_05000 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CUC01_05010 PF02569 Pantoate-beta-alanine ligase CUC01_05015 PF00005 ABC transporter CUC01_05030 PF02457 DisA bacterial checkpoint controller nucleotide-binding CUC01_05040 PF07691 PA14 domain CUC01_05040 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC01_05040 PF02838 Glycosyl hydrolase family 20, domain 2 CUC01_05050 PF01138 3' exoribonuclease family, domain 1 CUC01_05050 PF03725 3' exoribonuclease family, domain 2 CUC01_05055 PF14245 Type IV pilin PilA CUC01_05055 PF07963 Prokaryotic N-terminal methylation motif CUC01_05075 PF01467 Cytidylyltransferase-like CUC01_05080 PF01416 tRNA pseudouridine synthase CUC01_05105 PF00132 Bacterial transferase hexapeptide (six repeats) CUC01_05105 PF12464 Maltose acetyltransferase CUC01_05110 PF00312 Ribosomal protein S15 CUC01_05115 PF00013 KH domain CUC01_05115 PF01138 3' exoribonuclease family, domain 1 CUC01_05115 PF03725 3' exoribonuclease family, domain 2 CUC01_05115 PF00575 S1 RNA binding domain CUC01_05115 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CUC01_05125 PF03471 Transporter associated domain CUC01_05125 PF00571 CBS domain CUC01_05125 PF01595 Cyclin M transmembrane N-terminal domain CUC01_05130 PF00571 CBS domain CUC01_05130 PF03471 Transporter associated domain CUC01_05130 PF01595 Cyclin M transmembrane N-terminal domain CUC01_05150 PF02581 Thiamine monophosphate synthase CUC01_05150 PF17792 ThiD2 family CUC01_05155 PF01180 Dihydroorotate dehydrogenase CUC01_05160 PF14579 Helix-hairpin-helix motif CUC01_05160 PF01336 OB-fold nucleic acid binding domain CUC01_05160 PF02811 PHP domain CUC01_05160 PF07733 Bacterial DNA polymerase III alpha NTPase domain CUC01_05160 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CUC01_05170 PF00282 Pyridoxal-dependent decarboxylase conserved domain CUC01_05185 PF07691 PA14 domain CUC01_05185 PF02838 Glycosyl hydrolase family 20, domain 2 CUC01_05185 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC01_05195 PF00654 Voltage gated chloride channel CUC01_05200 PF02954 Bacterial regulatory protein, Fis family CUC01_05200 PF01590 GAF domain CUC01_05200 PF00158 Sigma-54 interaction domain CUC01_05215 PF00106 short chain dehydrogenase CUC01_05225 PF12857 TOBE-like domain CUC01_05225 PF00005 ABC transporter CUC01_05245 PF00005 ABC transporter CUC01_05285 PF00378 Enoyl-CoA hydratase/isomerase CUC01_05305 PF00004 ATPase family associated with various cellular activities (AAA) CUC01_05305 PF01434 Peptidase family M41 CUC01_05305 PF17862 AAA+ lid domain CUC01_05320 PF05192 MutS domain III CUC01_05320 PF05190 MutS family domain IV CUC01_05320 PF01624 MutS domain I CUC01_05320 PF05188 MutS domain II CUC01_05320 PF00488 MutS domain V CUC01_05335 PF02683 Cytochrome C biogenesis protein transmembrane region CUC01_05335 PF11412 Disulphide bond corrector protein DsbC CUC01_05365 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CUC01_05365 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CUC01_05375 PF12704 MacB-like periplasmic core domain CUC01_05375 PF02687 FtsX-like permease family CUC01_05375 PF00005 ABC transporter CUC01_05445 PF00005 ABC transporter CUC01_05445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC01_05450 PF01926 50S ribosome-binding GTPase CUC01_05450 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CUC01_05455 PF03739 Lipopolysaccharide export system permease LptF/LptG CUC01_05470 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CUC01_05470 PF02779 Transketolase, pyrimidine binding domain CUC01_05470 PF02780 Transketolase, C-terminal domain CUC01_05475 PF02609 Exonuclease VII small subunit CUC01_05485 PF00072 Response regulator receiver domain CUC01_05485 PF00158 Sigma-54 interaction domain CUC01_05485 PF02954 Bacterial regulatory protein, Fis family CUC01_05490 PF00512 His Kinase A (phospho-acceptor) domain CUC01_05490 PF00989 PAS fold CUC01_05490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC01_05500 PF01676 Metalloenzyme superfamily CUC01_05500 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CUC01_05505 PF00164 Ribosomal protein S12/S23 CUC01_05510 PF00177 Ribosomal protein S7p/S5e CUC01_05515 PF03764 Elongation factor G, domain IV CUC01_05515 PF03144 Elongation factor Tu domain 2 CUC01_05515 PF00009 Elongation factor Tu GTP binding domain CUC01_05515 PF14492 Elongation Factor G, domain II CUC01_05515 PF00679 Elongation factor G C-terminus CUC01_05520 PF00338 Ribosomal protein S10p/S20e CUC01_05525 PF00297 Ribosomal protein L3 CUC01_05530 PF00573 Ribosomal protein L4/L1 family CUC01_05535 PF00276 Ribosomal protein L23 CUC01_05540 PF00181 Ribosomal Proteins L2, RNA binding domain CUC01_05540 PF03947 Ribosomal Proteins L2, C-terminal domain CUC01_05545 PF00203 Ribosomal protein S19 CUC01_05555 PF00237 Ribosomal protein L22p/L17e CUC01_05560 PF07650 KH domain CUC01_05560 PF00189 Ribosomal protein S3, C-terminal domain CUC01_05565 PF00252 Ribosomal protein L16p/L10e CUC01_05570 PF00831 Ribosomal L29 protein CUC01_05575 PF00366 Ribosomal protein S17 CUC01_05580 PF00238 Ribosomal protein L14p/L23e CUC01_05595 PF08264 Anticodon-binding domain of tRNA CUC01_05595 PF00133 tRNA synthetases class I (I, L, M and V) CUC01_05595 PF10458 Valyl tRNA synthetase tRNA binding arm CUC01_05600 PF00703 Glycosyl hydrolases family 2 CUC01_05600 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CUC01_05600 PF16355 Domain of unknown function (DUF4982) CUC01_05600 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CUC01_05600 PF02837 Glycosyl hydrolases family 2, sugar binding domain CUC01_05620 PF01618 MotA/TolQ/ExbB proton channel family CUC01_05655 PF00216 Bacterial DNA-binding protein CUC01_05660 PF01351 Ribonuclease HII CUC01_05660 PF11858 Domain of unknown function (DUF3378) CUC01_05665 PF05036 Sporulation related domain CUC01_05665 PF03330 Lytic transglycolase CUC01_05675 PF02390 Putative methyltransferase CUC01_05680 PF01702 Queuine tRNA-ribosyltransferase CUC01_05685 PF02699 Preprotein translocase subunit CUC01_05695 PF00589 Phage integrase family CUC01_05695 PF02899 Phage integrase, N-terminal SAM-like domain CUC01_05710 PF00886 Ribosomal protein S16 CUC01_05715 PF01202 Shikimate kinase CUC01_05720 PF01300 Telomere recombination CUC01_05720 PF03481 Putative GTP-binding controlling metal-binding CUC01_05725 PF01230 HIT domain CUC01_05735 PF01783 Ribosomal L32p protein family CUC01_05740 PF02504 Fatty acid synthesis protein CUC01_05745 PF07697 7TM-HD extracellular CUC01_05745 PF07698 7TM receptor with intracellular HD hydrolase CUC01_05745 PF01966 HD domain CUC01_05750 PF07883 Cupin domain CUC01_05750 PF02130 Uncharacterized protein family UPF0054 CUC01_05775 PF00578 AhpC/TSA family CUC01_05815 PF00701 Dihydrodipicolinate synthetase family CUC01_05820 PF05173 Dihydrodipicolinate reductase, C-terminus CUC01_05820 PF01113 Dihydrodipicolinate reductase, N-terminus CUC01_05825 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CUC01_05830 PF02548 Ketopantoate hydroxymethyltransferase CUC01_05880 PF00575 S1 RNA binding domain CUC01_05890 PF03462 PCRF domain CUC01_05890 PF00472 RF-1 domain CUC01_05895 PF01746 tRNA (Guanine-1)-methyltransferase CUC01_05905 PF00849 RNA pseudouridylate synthase CUC01_05905 PF01479 S4 domain CUC01_05925 PF00753 Metallo-beta-lactamase superfamily CUC01_05925 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CUC01_05925 PF10996 Beta-Casp domain CUC01_05930 PF03960 ArsC family CUC01_05935 PF00027 Cyclic nucleotide-binding domain CUC01_05935 PF00520 Ion transport protein CUC01_05940 PF00343 Carbohydrate phosphorylase CUC01_05940 PF11897 Protein of unknown function (DUF3417) CUC01_05950 PF00107 Zinc-binding dehydrogenase CUC01_05950 PF08240 Alcohol dehydrogenase GroES-like domain CUC01_05955 PF01327 Polypeptide deformylase CUC01_06025 PF08543 Phosphomethylpyrimidine kinase CUC01_06035 PF00939 Sodium:sulfate symporter transmembrane region CUC01_06040 PF00873 AcrB/AcrD/AcrF family CUC01_06045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC01_06045 PF00529 HlyD membrane-fusion protein of T1SS CUC01_06050 PF00690 Cation transporter/ATPase, N-terminus CUC01_06050 PF00689 Cation transporting ATPase, C-terminus CUC01_06070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUC01_06070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CUC01_06070 PF00205 Thiamine pyrophosphate enzyme, central domain CUC01_06075 PF02637 GatB domain CUC01_06075 PF02934 GatB/GatE catalytic domain CUC01_06085 PF00365 Phosphofructokinase CUC01_06090 PF16363 GDP-mannose 4,6 dehydratase CUC01_06095 PF00483 Nucleotidyl transferase CUC01_06105 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CUC01_06105 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CUC01_06110 PF03099 Biotin/lipoate A/B protein ligase family CUC01_06110 PF02237 Biotin protein ligase C terminal domain CUC01_06110 PF08279 HTH domain CUC01_06115 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CUC01_06120 PF02785 Biotin carboxylase C-terminal domain CUC01_06120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUC01_06120 PF00289 Biotin carboxylase, N-terminal domain CUC01_06120 PF00364 Biotin-requiring enzyme CUC01_06120 PF02436 Conserved carboxylase domain CUC01_06120 PF00682 HMGL-like CUC01_06130 PF01039 Carboxyl transferase domain CUC01_06145 PF01245 Ribosomal protein L19 CUC01_06155 PF08308 PEGA domain CUC01_06155 PF00069 Protein kinase domain CUC01_06160 PF12146 Serine aminopeptidase, S33 CUC01_06165 PF00266 Aminotransferase class-V CUC01_06180 PF01252 Signal peptidase (SPase) II CUC01_06190 PF07859 alpha/beta hydrolase fold CUC01_06190 PF13472 GDSL-like Lipase/Acylhydrolase family CUC01_06195 PF04389 Peptidase family M28 CUC01_06220 PF12704 MacB-like periplasmic core domain CUC01_06220 PF02687 FtsX-like permease family CUC01_06230 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CUC01_06230 PF00132 Bacterial transferase hexapeptide (six repeats) CUC01_06235 PF13419 Haloacid dehalogenase-like hydrolase CUC01_06240 PF02646 RmuC family CUC01_06245 PF17092 Penicillin-binding protein OB-like domain CUC01_06245 PF00912 Transglycosylase CUC01_06245 PF00905 Penicillin binding protein transpeptidase domain CUC01_06250 PF13180 PDZ domain CUC01_06275 PF00474 Sodium:solute symporter family CUC01_06280 PF00117 Glutamine amidotransferase class-I CUC01_06280 PF06418 CTP synthase N-terminus CUC01_06285 PF02348 Cytidylyltransferase CUC01_06300 PF09312 SurA N-terminal domain CUC01_06300 PF00639 PPIC-type PPIASE domain CUC01_06305 PF00437 Type II/IV secretion system protein CUC01_06310 PF00437 Type II/IV secretion system protein CUC01_06330 PF02470 MlaD protein CUC01_06335 PF00005 ABC transporter CUC01_06350 PF00005 ABC transporter CUC01_06350 PF00664 ABC transporter transmembrane region CUC01_06355 PF00664 ABC transporter transmembrane region CUC01_06355 PF00005 ABC transporter CUC01_06360 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CUC01_06360 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CUC01_06360 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CUC01_06360 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CUC01_06370 PF02491 SHS2 domain inserted in FTSA CUC01_06395 PF16653 Saccharopine dehydrogenase C-terminal domain CUC01_06395 PF03435 Saccharopine dehydrogenase NADP binding domain CUC01_06415 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC01_06420 PF00528 Binding-protein-dependent transport system inner membrane component CUC01_06425 PF12911 N-terminal TM domain of oligopeptide transport permease C CUC01_06425 PF00528 Binding-protein-dependent transport system inner membrane component CUC01_06440 PF00579 tRNA synthetases class I (W and Y) CUC01_06440 PF01479 S4 domain CUC01_06445 PF13593 SBF-like CPA transporter family (DUF4137) CUC01_06475 PF02195 ParB-like nuclease domain CUC01_06475 PF17762 HTH domain found in ParB protein CUC01_06510 PF00521 DNA gyrase/topoisomerase IV, subunit A CUC01_06540 PF02421 Ferrous iron transport protein B CUC01_06540 PF07670 Nucleoside recognition CUC01_06540 PF17910 FeoB cytosolic helical domain CUC01_06540 PF07664 Ferrous iron transport protein B C terminus CUC01_06540 PF04023 FeoA domain CUC01_06550 PF00884 Sulfatase CUC01_06550 PF16385 Domain of unknown function CUC01_06555 PF01594 AI-2E family transporter CUC01_06560 PF17820 PDZ domain CUC01_06560 PF02163 Peptidase family M50 CUC01_06570 PF04371 Porphyromonas-type peptidyl-arginine deiminase CUC01_06590 PF00731 AIR carboxylase CUC01_06595 PF00156 Phosphoribosyl transferase domain CUC01_06600 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CUC01_06600 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CUC01_06605 PF01979 Amidohydrolase family CUC01_06610 PF01980 tRNA-methyltransferase O CUC01_06610 PF18389 TrmO C-terminal domain CUC01_06620 PF00529 HlyD membrane-fusion protein of T1SS CUC01_06620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC01_06625 PF00873 AcrB/AcrD/AcrF family CUC01_06635 PF02321 Outer membrane efflux protein CUC01_06640 PF00005 ABC transporter CUC01_06640 PF02687 FtsX-like permease family CUC01_06640 PF12704 MacB-like periplasmic core domain CUC01_06645 PF00005 ABC transporter CUC01_06645 PF02687 FtsX-like permease family CUC01_06645 PF12704 MacB-like periplasmic core domain CUC01_06650 PF00529 HlyD membrane-fusion protein of T1SS CUC01_06650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC01_06655 PF00293 NUDIX domain CUC01_06665 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CUC01_06665 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CUC01_06665 PF01189 16S rRNA methyltransferase RsmB/F CUC01_06670 PF00480 ROK family CUC01_06675 PF01258 Prokaryotic dksA/traR C4-type zinc finger CUC01_06680 PF00471 Ribosomal protein L33 CUC01_06685 PF01084 Ribosomal protein S18 CUC01_06690 PF02649 Type I GTP cyclohydrolase folE2 CUC01_06700 PF01488 Shikimate / quinate 5-dehydrogenase CUC01_06700 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CUC01_06705 PF03900 Porphobilinogen deaminase, C-terminal domain CUC01_06705 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CUC01_06715 PF04343 Protein of unknown function, DUF488 CUC01_06730 PF01119 DNA mismatch repair protein, C-terminal domain CUC01_06730 PF08676 MutL C terminal dimerisation domain CUC01_06770 PF00069 Protein kinase domain CUC01_06775 PF13614 AAA domain CUC01_06780 PF00069 Protein kinase domain CUC01_06785 PF00155 Aminotransferase class I and II CUC01_06800 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CUC01_06800 PF09297 NADH pyrophosphatase zinc ribbon domain CUC01_06800 PF00293 NUDIX domain CUC01_06805 PF00294 pfkB family carbohydrate kinase CUC01_06820 PF00899 ThiF family CUC01_06830 PF13277 YmdB-like protein CUC01_06840 PF00579 tRNA synthetases class I (W and Y) CUC01_06850 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CUC01_06850 PF02542 YgbB family CUC01_06865 PF08502 LeuA allosteric (dimerisation) domain CUC01_06865 PF00682 HMGL-like CUC01_06870 PF01557 Fumarylacetoacetate (FAA) hydrolase family CUC01_06905 PF00004 ATPase family associated with various cellular activities (AAA) CUC01_06905 PF02861 Clp amino terminal domain, pathogenicity island component CUC01_06905 PF07724 AAA domain (Cdc48 subfamily) CUC01_06905 PF17871 AAA lid domain CUC01_06905 PF10431 C-terminal, D2-small domain, of ClpB protein CUC01_06910 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain CUC01_06915 PF02151 UvrB/uvrC motif CUC01_06920 PF00950 ABC 3 transport family CUC01_06925 PF00005 ABC transporter CUC01_06945 PF07555 beta-N-acetylglucosaminidase CUC01_06945 PF02838 Glycosyl hydrolase family 20, domain 2 CUC01_06950 PF17768 RecJ OB domain CUC01_06950 PF01368 DHH family CUC01_06950 PF02272 DHHA1 domain CUC01_06955 PF00682 HMGL-like CUC01_06955 PF08502 LeuA allosteric (dimerisation) domain CUC01_06960 PF00682 HMGL-like CUC01_06960 PF08502 LeuA allosteric (dimerisation) domain CUC01_06965 PF08502 LeuA allosteric (dimerisation) domain CUC01_06965 PF00682 HMGL-like CUC01_06980 PF01554 MatE CUC01_06985 PF01209 ubiE/COQ5 methyltransferase family CUC01_07005 PF01678 Diaminopimelate epimerase CUC01_07010 PF00271 Helicase conserved C-terminal domain CUC01_07010 PF17764 3′ DNA-binding domain (3′BD) CUC01_07010 PF04851 Type III restriction enzyme, res subunit CUC01_07010 PF18074 Primosomal protein N C-terminal domain CUC01_07010 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CUC01_07015 PF17827 PrmC N-terminal domain CUC01_07015 PF05175 Methyltransferase small domain CUC01_07020 PF00472 RF-1 domain CUC01_07020 PF03462 PCRF domain CUC01_07030 PF01235 Sodium:alanine symporter family CUC01_07045 PF04960 Glutaminase CUC01_07050 PF13520 Amino acid permease CUC01_07075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUC01_07075 PF09180 Prolyl-tRNA synthetase, C-terminal CUC01_07075 PF03129 Anticodon binding domain CUC01_07095 PF01636 Phosphotransferase enzyme family CUC01_07100 PF01370 NAD dependent epimerase/dehydratase family CUC01_07110 PF12002 MgsA AAA+ ATPase C terminal CUC01_07110 PF00004 ATPase family associated with various cellular activities (AAA) CUC01_07110 PF16193 AAA C-terminal domain CUC01_07130 PF02659 Putative manganese efflux pump CUC01_07135 PF02567 Phenazine biosynthesis-like protein CUC01_07145 PF04963 Sigma-54 factor, core binding domain CUC01_07145 PF00309 Sigma-54 factor, Activator interacting domain (AID) CUC01_07145 PF04552 Sigma-54, DNA binding domain CUC01_07150 PF07690 Major Facilitator Superfamily CUC01_07165 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CUC01_07180 PF00271 Helicase conserved C-terminal domain CUC01_07180 PF00270 DEAD/DEAH box helicase CUC01_07190 PF01066 CDP-alcohol phosphatidyltransferase CUC01_07195 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CUC01_07195 PF03120 NAD-dependent DNA ligase OB-fold domain CUC01_07195 PF01653 NAD-dependent DNA ligase adenylation domain CUC01_07195 PF00533 BRCA1 C Terminus (BRCT) domain CUC01_07205 PF01817 Chorismate mutase type II CUC01_07205 PF00800 Prephenate dehydratase CUC01_07205 PF01842 ACT domain CUC01_07210 PF00849 RNA pseudouridylate synthase CUC01_07215 PF01784 NIF3 (NGG1p interacting factor 3) CUC01_07235 PF00005 ABC transporter CUC01_07240 PF11638 DnaA N-terminal domain CUC01_07240 PF08299 Bacterial dnaA protein helix-turn-helix CUC01_07240 PF00308 Bacterial dnaA protein CUC01_07245 PF00293 NUDIX domain CUC01_07260 PF00583 Acetyltransferase (GNAT) family CUC01_07260 PF00696 Amino acid kinase family CUC01_07265 PF02810 SEC-C motif CUC01_07265 PF07516 SecA Wing and Scaffold domain CUC01_07265 PF01043 SecA preprotein cross-linking domain CUC01_07265 PF07517 SecA DEAD-like domain CUC01_07270 PF17760 UvrA interaction domain CUC01_07270 PF17755 UvrA DNA-binding domain CUC01_07270 PF00005 ABC transporter CUC01_07310 PF03485 Arginyl tRNA synthetase N terminal domain CUC01_07310 PF00750 tRNA synthetases class I (R) CUC01_07310 PF05746 DALR anticodon binding domain CUC01_07320 PF01432 Peptidase family M3 CUC01_07350 PF00501 AMP-binding enzyme CUC01_07350 PF13193 AMP-binding enzyme C-terminal domain CUC01_07365 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CUC01_07370 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CUC01_07410 PF00448 SRP54-type protein, GTPase domain CUC01_07410 PF02881 SRP54-type protein, helical bundle domain CUC01_07410 PF02978 Signal peptide binding domain CUC01_07415 PF07691 PA14 domain CUC01_07415 PF02838 Glycosyl hydrolase family 20, domain 2 CUC01_07415 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC01_07435 PF05683 Fumarase C-terminus CUC01_07435 PF05681 Fumarate hydratase (Fumerase) CUC01_07445 PF07549 SecD/SecF GG Motif CUC01_07445 PF02355 Protein export membrane protein CUC01_07465 PF00155 Aminotransferase class I and II CUC01_07470 PF00881 Nitroreductase family CUC01_07495 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CUC01_07500 PF01750 Hydrogenase maturation protease CUC01_07510 PF00374 Nickel-dependent hydrogenase CUC01_07515 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CUC01_07515 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CUC01_07535 PF00709 Adenylosuccinate synthetase CUC01_07550 PF00905 Penicillin binding protein transpeptidase domain CUC01_07550 PF00912 Transglycosylase CUC01_07555 PF01195 Peptidyl-tRNA hydrolase CUC01_07565 PF07726 ATPase family associated with various cellular activities (AAA) CUC01_07565 PF17863 AAA lid domain CUC01_07570 PF00795 Carbon-nitrogen hydrolase CUC01_07580 PF00107 Zinc-binding dehydrogenase CUC01_07580 PF08240 Alcohol dehydrogenase GroES-like domain CUC01_07585 PF02403 Seryl-tRNA synthetase N-terminal domain CUC01_07585 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUC01_07595 PF04055 Radical SAM superfamily CUC01_07595 PF06969 HemN C-terminal domain CUC01_07615 PF00933 Glycosyl hydrolase family 3 N terminal domain CUC01_07620 PF00722 Glycosyl hydrolases family 16 CUC01_07630 PF01515 Phosphate acetyl/butaryl transferase CUC01_07630 PF03949 Malic enzyme, NAD binding domain CUC01_07630 PF00390 Malic enzyme, N-terminal domain CUC01_07645 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUC01_07650 PF01588 Putative tRNA binding domain CUC01_07650 PF09334 tRNA synthetases class I (M) CUC01_07650 PF08264 Anticodon-binding domain of tRNA CUC01_07655 PF00155 Aminotransferase class I and II CUC01_07660 PF05025 RbsD / FucU transport protein family CUC01_07665 PF01636 Phosphotransferase enzyme family CUC01_07675 PF01757 Acyltransferase family CUC01_07695 PF00535 Glycosyl transferase family 2 CUC01_07705 PF00132 Bacterial transferase hexapeptide (six repeats) CUC01_07715 PF13439 Glycosyltransferase Family 4 CUC01_07715 PF00534 Glycosyl transferases group 1 CUC01_07725 PF00534 Glycosyl transferases group 1 CUC01_07725 PF13439 Glycosyltransferase Family 4 CUC01_07745 PF13439 Glycosyltransferase Family 4 CUC01_07750 PF13439 Glycosyltransferase Family 4 CUC01_07755 PF13439 Glycosyltransferase Family 4 CUC01_07755 PF00534 Glycosyl transferases group 1 CUC01_07760 PF00535 Glycosyl transferase family 2 CUC01_07765 PF02397 Bacterial sugar transferase CUC01_07775 PF13614 AAA domain CUC01_07780 PF02563 Polysaccharide biosynthesis/export protein CUC01_07780 PF10531 SLBB domain CUC01_07790 PF17854 FtsK alpha domain CUC01_07790 PF09397 Ftsk gamma domain CUC01_07790 PF01580 FtsK/SpoIIIE family CUC01_07800 PF13302 Acetyltransferase (GNAT) domain CUC01_07810 PF02915 Rubrerythrin CUC01_07815 PF01578 Cytochrome C assembly protein CUC01_07830 PF06628 Catalase-related immune-responsive CUC01_07830 PF00199 Catalase CUC01_07830 PF18011 C-terminal domain found in long catalases CUC01_07850 PF00171 Aldehyde dehydrogenase family CUC01_07925 PF09335 SNARE associated Golgi protein CUC01_07930 PF02684 Lipid-A-disaccharide synthetase CUC01_07935 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CUC01_07935 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CUC01_07955 PF00654 Voltage gated chloride channel CUC01_07985 PF02321 Outer membrane efflux protein CUC01_07990 PF00873 AcrB/AcrD/AcrF family CUC01_07995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC01_08000 PF01432 Peptidase family M3 CUC01_08005 PF00682 HMGL-like CUC01_08005 PF08502 LeuA allosteric (dimerisation) domain CUC01_08020 PF01883 Iron-sulfur cluster assembly protein CUC01_08020 PF10609 NUBPL iron-transfer P-loop NTPase CUC01_08025 PF01554 MatE CUC01_08035 PF00364 Biotin-requiring enzyme CUC01_08035 PF02436 Conserved carboxylase domain CUC01_08035 PF00682 HMGL-like CUC01_08040 PF13396 Phospholipase_D-nuclease N-terminal CUC01_08040 PF13091 PLD-like domain CUC01_08045 PF00303 Thymidylate synthase CUC01_08050 PF00186 Dihydrofolate reductase CUC01_08055 PF00873 AcrB/AcrD/AcrF family CUC01_08060 PF13533 Biotin-lipoyl like CUC01_08075 PF04909 Amidohydrolase CUC01_08080 PF00753 Metallo-beta-lactamase superfamily CUC01_08085 PF00270 DEAD/DEAH box helicase CUC01_08085 PF00271 Helicase conserved C-terminal domain CUC01_08090 PF02075 Crossover junction endodeoxyribonuclease RuvC CUC01_08105 PF00293 NUDIX domain CUC01_08115 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC01_08115 PF02838 Glycosyl hydrolase family 20, domain 2 CUC01_08120 PF02838 Glycosyl hydrolase family 20, domain 2 CUC01_08120 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC01_08135 PF02110 Hydroxyethylthiazole kinase family CUC01_08140 PF02581 Thiamine monophosphate synthase CUC01_08145 PF00291 Pyridoxal-phosphate dependent enzyme CUC01_08150 PF01053 Cys/Met metabolism PLP-dependent enzyme CUC01_08155 PF02082 Transcriptional regulator CUC01_08160 PF01168 Alanine racemase, N-terminal domain CUC01_08160 PF00842 Alanine racemase, C-terminal domain CUC01_08175 PF09827 CRISPR associated protein Cas2 CUC01_08195 PF07885 Ion channel CUC01_08200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC01_08200 PF00183 Hsp90 protein CUC01_08215 PF01409 tRNA synthetases class II core domain (F) CUC01_08215 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CUC01_08220 PF03483 B3/4 domain CUC01_08220 PF03484 tRNA synthetase B5 domain CUC01_08220 PF01588 Putative tRNA binding domain CUC01_08220 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CUC01_08220 PF03147 Ferredoxin-fold anticodon binding domain CUC01_08235 PF01212 Beta-eliminating lyase CUC01_08255 PF03352 Methyladenine glycosylase CUC01_08265 PF03807 NADP oxidoreductase coenzyme F420-dependent CUC01_08265 PF14748 Pyrroline-5-carboxylate reductase dimerisation CUC01_08290 PF01642 Methylmalonyl-CoA mutase CUC01_08295 PF02310 B12 binding domain CUC01_08295 PF01642 Methylmalonyl-CoA mutase CUC01_08315 PF17785 PUA-like domain CUC01_08315 PF10672 S-adenosylmethionine-dependent methyltransferase CUC01_08325 PF00342 Phosphoglucose isomerase CUC01_08335 PF02896 PEP-utilising enzyme, TIM barrel domain CUC01_08335 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CUC01_08335 PF00391 PEP-utilising enzyme, mobile domain CUC01_08340 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CUC01_08345 PF00730 HhH-GPD superfamily base excision DNA repair protein CUC01_08345 PF14815 NUDIX domain CUC01_08350 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CUC01_08350 PF01488 Shikimate / quinate 5-dehydrogenase CUC01_08350 PF08501 Shikimate dehydrogenase substrate binding domain CUC01_08360 PF08471 Class II vitamin B12-dependent ribonucleotide reductase CUC01_08360 PF02867 Ribonucleotide reductase, barrel domain CUC01_08375 PF09529 Integral membrane protein (intg_mem_TP0381) CUC01_08385 PF00696 Amino acid kinase family CUC01_08385 PF01842 ACT domain CUC01_08385 PF13840 ACT domain CUC01_08390 PF00742 Homoserine dehydrogenase CUC01_08390 PF03447 Homoserine dehydrogenase, NAD binding domain CUC01_08390 PF01842 ACT domain CUC01_08400 PF06738 Putative threonine/serine exporter CUC01_08400 PF12821 Threonine/Serine exporter, ThrE CUC01_08405 PF06738 Putative threonine/serine exporter CUC01_08410 PF02607 B12 binding domain CUC01_08410 PF00809 Pterin binding enzyme CUC01_08410 PF02965 Vitamin B12 dependent methionine synthase, activation domain CUC01_08410 PF02574 Homocysteine S-methyltransferase CUC01_08410 PF02310 B12 binding domain CUC01_08440 PF04073 Aminoacyl-tRNA editing domain CUC01_08445 PF00958 GMP synthase C terminal domain CUC01_08445 PF00117 Glutamine amidotransferase class-I CUC01_08445 PF02540 NAD synthase CUC01_08460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CUC01_08460 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC01_08465 PF00117 Glutamine amidotransferase class-I CUC01_08470 PF00425 chorismate binding enzyme CUC01_08485 PF00701 Dihydrodipicolinate synthetase family CUC01_08505 PF01546 Peptidase family M20/M25/M40 CUC01_08505 PF07687 Peptidase dimerisation domain CUC01_08510 PF10397 Adenylosuccinate lyase C-terminus CUC01_08510 PF00206 Lyase CUC01_08530 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CUC01_08530 PF01612 3'-5' exonuclease CUC01_08530 PF00476 DNA polymerase family A CUC01_08530 PF01367 5'-3' exonuclease, C-terminal SAM fold CUC01_08565 PF01032 FecCD transport family CUC01_08570 PF01032 FecCD transport family CUC01_08575 PF00005 ABC transporter CUC01_08580 PF01497 Periplasmic binding protein CUC01_08590 PF01578 Cytochrome C assembly protein CUC01_08605 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CUC01_08605 PF03173 Putative carbohydrate binding domain CUC01_08605 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC01_08605 PF02838 Glycosyl hydrolase family 20, domain 2 CUC01_08620 PF00795 Carbon-nitrogen hydrolase CUC01_08630 PF00483 Nucleotidyl transferase CUC01_08635 PF07977 FabA-like domain CUC01_08635 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CUC01_08650 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CUC01_08655 PF12161 HsdM N-terminal domain CUC01_08655 PF02384 N-6 DNA Methylase CUC01_08665 PF18766 SWI2/SNF2 ATPase CUC01_08665 PF12008 Type I restriction and modification enzyme - subunit R C terminal CUC01_08665 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CUC01_08675 PF00465 Iron-containing alcohol dehydrogenase CUC01_08700 PF00589 Phage integrase family CUC01_08700 PF02899 Phage integrase, N-terminal SAM-like domain CUC01_08705 PF02086 D12 class N6 adenine-specific DNA methyltransferase CUC01_08725 PF00149 Calcineurin-like phosphoesterase CUC01_08735 PF00175 Oxidoreductase NAD-binding domain CUC01_08735 PF00258 Flavodoxin CUC01_08735 PF00667 FAD binding domain CUC01_08745 PF01264 Chorismate synthase CUC01_08750 PF00216 Bacterial DNA-binding protein CUC01_08755 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CUC01_08765 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CUC01_08785 PF02673 Bacitracin resistance protein BacA CUC01_08790 PF00902 Sec-independent protein translocase protein (TatC) CUC01_08795 PF00749 tRNA synthetases class I (E and Q), catalytic domain CUC01_08800 PF00924 Mechanosensitive ion channel CUC01_08805 PF14489 QueF-like protein CUC01_08810 PF06508 Queuosine biosynthesis protein QueC CUC01_08815 PF02223 Thymidylate kinase CUC01_08820 PF00753 Metallo-beta-lactamase superfamily CUC01_08820 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CUC01_08820 PF10996 Beta-Casp domain CUC01_08840 PF00180 Isocitrate/isopropylmalate dehydrogenase CUC01_08845 PF01757 Acyltransferase family CUC01_08855 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CUC01_08865 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CUC01_08865 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CUC01_08885 PF13802 Galactose mutarotase-like CUC01_08885 PF16338 Domain of unknown function (DUF4968) CUC01_08885 PF17137 Domain of unknown function (DUF5110) CUC01_08885 PF01055 Glycosyl hydrolases family 31 CUC01_08890 PF00534 Glycosyl transferases group 1 CUC01_08890 PF13439 Glycosyltransferase Family 4 CUC01_08900 PF01327 Polypeptide deformylase CUC01_08910 PF01618 MotA/TolQ/ExbB proton channel family CUC01_08920 PF00436 Single-strand binding protein family CUC01_08925 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CUC01_08925 PF02843 Phosphoribosylglycinamide synthetase, C domain CUC01_08925 PF02844 Phosphoribosylglycinamide synthetase, N domain CUC01_08930 PF06940 Domain of unknown function (DUF1287) CUC01_08935 PF01268 Formate--tetrahydrofolate ligase CUC01_08940 PF08546 Ketopantoate reductase PanE/ApbA C terminal CUC01_08940 PF02558 Ketopantoate reductase PanE/ApbA CUC01_08960 PF00528 Binding-protein-dependent transport system inner membrane component CUC01_08965 PF00528 Binding-protein-dependent transport system inner membrane component CUC01_08965 PF12911 N-terminal TM domain of oligopeptide transport permease C CUC01_08970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC01_08975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC01_08975 PF00005 ABC transporter CUC01_08980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC01_08980 PF00005 ABC transporter CUC01_08985 PF01168 Alanine racemase, N-terminal domain CUC01_08985 PF00842 Alanine racemase, C-terminal domain CUC01_09000 PF00892 EamA-like transporter family CUC01_09010 PF13286 Phosphohydrolase-associated domain CUC01_09010 PF01966 HD domain CUC01_09030 PF13180 PDZ domain CUC01_09030 PF17820 PDZ domain CUC01_09050 PF13667 ThiC-associated domain CUC01_09050 PF01964 Radical SAM ThiC family CUC01_09055 PF00403 Heavy-metal-associated domain CUC01_09060 PF02583 Metal-sensitive transcriptional repressor CUC01_09075 PF04542 Sigma-70 region 2 CUC01_09075 PF08281 Sigma-70, region 4 CUC01_09080 PF13859 BNR repeat-like domain CUC01_09080 PF14873 N-terminal domain of BNR-repeat neuraminidase CUC01_09090 PF07690 Major Facilitator Superfamily CUC01_09095 PF07881 L-fucose isomerase, first N-terminal domain CUC01_09095 PF07882 L-fucose isomerase, second N-terminal domain CUC01_09095 PF02952 L-fucose isomerase, C-terminal domain CUC01_09105 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CUC01_09105 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CUC01_09125 PF17954 Quercetinase C-terminal cupin domain CUC01_09125 PF02678 Pirin CUC01_09135 PF01728 FtsJ-like methyltransferase CUC01_09135 PF01479 S4 domain CUC01_09155 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CUC01_09155 PF02585 GlcNAc-PI de-N-acetylase CUC01_09160 PF17785 PUA-like domain CUC01_09160 PF10672 S-adenosylmethionine-dependent methyltransferase CUC01_09180 PF17785 PUA-like domain CUC01_09180 PF10672 S-adenosylmethionine-dependent methyltransferase CUC01_09185 PF04321 RmlD substrate binding domain CUC01_09200 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC01_09200 PF02838 Glycosyl hydrolase family 20, domain 2 CUC01_09210 PF01554 MatE CUC01_09215 PF00128 Alpha amylase, catalytic domain CUC01_09215 PF09154 Domain of unknown function (DUF1939) CUC01_09225 PF13411 MerR HTH family regulatory protein CUC01_09230 PF02525 Flavodoxin-like fold CUC01_09240 PF00248 Aldo/keto reductase family CUC01_09260 PF00149 Calcineurin-like phosphoesterase CUC01_09265 PF00248 Aldo/keto reductase family CUC01_09270 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CUC01_09275 PF00248 Aldo/keto reductase family CUC01_09285 PF00155 Aminotransferase class I and II CUC01_09315 PF01757 Acyltransferase family CUC01_09325 PF13180 PDZ domain CUC01_09330 PF13180 PDZ domain CUC01_09370 PF02686 Glu-tRNAGln amidotransferase C subunit CUC01_09375 PF01425 Amidase CUC01_09380 PF17863 AAA lid domain CUC01_09380 PF07726 ATPase family associated with various cellular activities (AAA) CUC01_09395 PF13519 von Willebrand factor type A domain CUC01_09410 PF00248 Aldo/keto reductase family CUC01_09415 PF03129 Anticodon binding domain CUC01_09415 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUC01_09430 PF00155 Aminotransferase class I and II CUC01_09435 PF01037 Lrp/AsnC ligand binding domain CUC01_09440 PF00176 SNF2 family N-terminal domain CUC01_09440 PF04434 SWIM zinc finger CUC01_09440 PF00271 Helicase conserved C-terminal domain CUC01_09445 PF04379 ApaG domain CUC01_09455 PF00535 Glycosyl transferase family 2 CUC01_09470 PF01168 Alanine racemase, N-terminal domain CUC01_09485 PF00005 ABC transporter CUC01_09490 PF07687 Peptidase dimerisation domain CUC01_09490 PF01546 Peptidase family M20/M25/M40 CUC01_09495 PF02603 HPr Serine kinase N terminus CUC01_09495 PF07475 HPr Serine kinase C-terminal domain CUC01_09500 PF00381 PTS HPr component phosphorylation site CUC01_09505 PF05524 PEP-utilising enzyme, N-terminal CUC01_09505 PF02896 PEP-utilising enzyme, TIM barrel domain CUC01_09505 PF00391 PEP-utilising enzyme, mobile domain CUC01_09510 PF00884 Sulfatase CUC01_09515 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CUC01_09515 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CUC01_09520 PF02657 Fe-S metabolism associated domain CUC01_09530 PF00128 Alpha amylase, catalytic domain CUC01_09530 PF02806 Alpha amylase, C-terminal all-beta domain CUC01_09530 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CUC01_09535 PF04991 LicD family CUC01_09545 PF00155 Aminotransferase class I and II CUC01_09555 PF01467 Cytidylyltransferase-like CUC01_09565 PF04991 LicD family CUC01_09580 PF13649 Methyltransferase domain CUC01_09585 PF01704 UTP--glucose-1-phosphate uridylyltransferase CUC01_09600 PF01467 Cytidylyltransferase-like CUC01_09610 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CUC01_09610 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CUC01_09610 PF13288 DXP reductoisomerase C-terminal domain CUC01_09615 PF04235 Protein of unknown function (DUF418) CUC01_09615 PF07786 Protein of unknown function (DUF1624) CUC01_09625 PF00707 Translation initiation factor IF-3, C-terminal domain CUC01_09625 PF05198 Translation initiation factor IF-3, N-terminal domain CUC01_09630 PF03129 Anticodon binding domain CUC01_09630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUC01_09630 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CUC01_09630 PF02824 TGS domain CUC01_09645 PF00490 Delta-aminolevulinic acid dehydratase CUC01_09655 PF00486 Transcriptional regulatory protein, C terminal CUC01_09655 PF00072 Response regulator receiver domain CUC01_09660 PF00512 His Kinase A (phospho-acceptor) domain CUC01_09660 PF00672 HAMP domain CUC01_09660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC01_09665 PF01370 NAD dependent epimerase/dehydratase family CUC01_09700 PF00501 AMP-binding enzyme CUC01_09700 PF01553 Acyltransferase CUC01_09705 PF02601 Exonuclease VII, large subunit CUC01_09705 PF13742 OB-fold nucleic acid binding domain CUC01_09740 PF00549 CoA-ligase CUC01_09740 PF08442 ATP-grasp domain CUC01_09745 PF00549 CoA-ligase CUC01_09745 PF02629 CoA binding domain CUC01_09760 PF00271 Helicase conserved C-terminal domain CUC01_09760 PF09382 RQC domain CUC01_09760 PF16124 RecQ zinc-binding CUC01_09760 PF00570 HRDC domain CUC01_09760 PF00270 DEAD/DEAH box helicase CUC01_09795 PF02698 DUF218 domain CUC01_09815 PF00210 Ferritin-like domain CUC01_09820 PF01047 MarR family CUC01_09825 PF00291 Pyridoxal-phosphate dependent enzyme CUC01_09840 PF01451 Low molecular weight phosphotyrosine protein phosphatase CUC01_09850 PF01654 Cytochrome bd terminal oxidase subunit I CUC01_09855 PF02322 Cytochrome bd terminal oxidase subunit II CUC01_09860 PF16870 2-oxoglutarate dehydrogenase C-terminal CUC01_09860 PF16078 2-oxoglutarate dehydrogenase N-terminus CUC01_09860 PF02779 Transketolase, pyrimidine binding domain CUC01_09860 PF00676 Dehydrogenase E1 component CUC01_09865 PF02817 e3 binding domain CUC01_09865 PF00364 Biotin-requiring enzyme CUC01_09865 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CUC01_09880 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC01_09880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CUC01_09885 PF01979 Amidohydrolase family CUC01_09895 PF01301 Glycosyl hydrolases family 35 CUC01_09905 PF00593 TonB dependent receptor CUC01_09905 PF07715 TonB-dependent Receptor Plug Domain CUC01_09915 PF07685 CobB/CobQ-like glutamine amidotransferase domain CUC01_09915 PF00155 Aminotransferase class I and II CUC01_09915 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CUC01_09920 PF03186 CobD/Cbib protein CUC01_09925 PF02277 Phosphoribosyltransferase CUC01_09930 PF02654 Cobalamin-5-phosphate synthase CUC01_09940 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CUC01_09950 PF07669 Eco57I restriction-modification methylase CUC01_09975 PF00365 Phosphofructokinase CUC01_09995 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC01_09995 PF07691 PA14 domain CUC01_09995 PF02838 Glycosyl hydrolase family 20, domain 2 CUC01_10000 PF12002 MgsA AAA+ ATPase C terminal CUC01_10000 PF16193 AAA C-terminal domain CUC01_10000 PF00004 ATPase family associated with various cellular activities (AAA) CUC01_10005 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CUC01_10005 PF02837 Glycosyl hydrolases family 2, sugar binding domain CUC01_10005 PF00703 Glycosyl hydrolases family 2 CUC01_10010 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CUC01_10010 PF02837 Glycosyl hydrolases family 2, sugar binding domain CUC01_10010 PF00703 Glycosyl hydrolases family 2 CUC01_10010 PF16353 Domain of unknown function(DUF4981) CUC01_10010 PF02929 Beta galactosidase small chain CUC01_10050 PF17810 Arginine decarboxylase helical bundle domain CUC01_10050 PF17944 Arginine decarboxylase C-terminal helical extension CUC01_10050 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CUC01_10055 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CUC01_10065 PF00884 Sulfatase CUC01_10070 PF09334 tRNA synthetases class I (M) CUC01_10070 PF00133 tRNA synthetases class I (I, L, M and V) CUC01_10070 PF13603 Leucyl-tRNA synthetase, Domain 2 CUC01_10070 PF08264 Anticodon-binding domain of tRNA CUC01_10075 PF00834 Ribulose-phosphate 3 epimerase family CUC01_10080 PF02666 Phosphatidylserine decarboxylase CUC01_10090 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUC01_10090 PF00205 Thiamine pyrophosphate enzyme, central domain CUC01_10090 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CUC01_10095 PF13419 Haloacid dehalogenase-like hydrolase CUC01_10100 PF01649 Ribosomal protein S20 CUC01_10110 PF02401 LytB protein CUC01_10115 PF01207 Dihydrouridine synthase (Dus) CUC01_10135 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CUC01_10135 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CUC01_10150 PF03958 Bacterial type II/III secretion system short domain CUC01_10150 PF00263 Bacterial type II and III secretion system protein CUC01_10160 PF13735 tRNA nucleotidyltransferase domain 2 putative CUC01_10160 PF01743 Poly A polymerase head domain CUC01_10160 PF12627 Probable RNA and SrmB- binding site of polymerase A CUC01_10175 PF08482 ATP-dependent helicase C-terminal CUC01_10175 PF00270 DEAD/DEAH box helicase CUC01_10175 PF04408 Helicase associated domain (HA2) CUC01_10175 PF00271 Helicase conserved C-terminal domain CUC01_10190 PF17804 Tail specific protease N-terminal domain CUC01_10190 PF03572 Peptidase family S41 CUC01_10190 PF00595 PDZ domain CUC01_10190 PF11818 C-terminal domain of tail specific protease (DUF3340) CUC01_10195 PF00464 Serine hydroxymethyltransferase CUC01_10210 PF01427 D-ala-D-ala dipeptidase CUC01_10215 PF04545 Sigma-70, region 4 CUC01_10215 PF03979 Sigma-70 factor, region 1.1 CUC01_10215 PF00140 Sigma-70 factor, region 1.2 CUC01_10215 PF04542 Sigma-70 region 2 CUC01_10215 PF04539 Sigma-70 region 3 CUC01_10220 PF10410 DnaB-helicase binding domain of primase CUC01_10220 PF08275 DNA primase catalytic core, N-terminal domain CUC01_10220 PF01807 CHC2 zinc finger CUC01_10225 PF01957 NfeD-like C-terminal, partner-binding CUC01_10225 PF01972 Serine dehydrogenase proteinase CUC01_10230 PF04055 Radical SAM superfamily CUC01_10230 PF18693 TRAM domain CUC01_10230 PF00919 Uncharacterized protein family UPF0004 CUC01_10245 PF02446 4-alpha-glucanotransferase CUC01_10250 PF07548 Chlamydia polymorphic membrane protein middle domain CUC01_10250 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CUC01_10250 PF03797 Autotransporter beta-domain CUC01_10275 PF00677 Lumazine binding domain CUC01_10285 PF01522 Polysaccharide deacetylase CUC01_10295 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CUC01_10305 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CUC01_10305 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CUC01_10305 PF10531 SLBB domain CUC01_10310 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CUC01_10310 PF01568 Molydopterin dinucleotide binding domain CUC01_10310 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CUC01_10310 PF00384 Molybdopterin oxidoreductase CUC01_10315 PF00146 NADH dehydrogenase CUC01_10325 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CUC01_10330 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CUC01_10335 PF00361 Proton-conducting membrane transporter CUC01_10335 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CUC01_10340 PF00361 Proton-conducting membrane transporter CUC01_10345 PF00361 Proton-conducting membrane transporter CUC01_10360 PF01883 Iron-sulfur cluster assembly protein CUC01_10370 PF00854 POT family CUC01_10375 PF00348 Polyprenyl synthetase CUC01_10380 PF01969 Protein of unknown function DUF111 CUC01_10385 PF01171 PP-loop family CUC01_10385 PF09179 TilS substrate binding domain CUC01_10385 PF11734 TilS substrate C-terminal domain CUC01_10390 PF00731 AIR carboxylase CUC01_10395 PF02638 Glycosyl hydrolase-like 10 CUC01_10400 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CUC01_10400 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CUC01_10405 PF01467 Cytidylyltransferase-like CUC01_10405 PF00294 pfkB family carbohydrate kinase CUC01_10410 PF03023 Lipid II flippase MurJ CUC01_10415 PF00155 Aminotransferase class I and II CUC01_10425 PF01207 Dihydrouridine synthase (Dus) CUC01_10430 PF00437 Type II/IV secretion system protein CUC01_10435 PF00437 Type II/IV secretion system protein CUC01_10440 PF00482 Type II secretion system (T2SS), protein F CUC01_10450 PF00535 Glycosyl transferase family 2 CUC01_10455 PF00535 Glycosyl transferase family 2 CUC01_10460 PF00334 Nucleoside diphosphate kinase CUC01_10470 PF00849 RNA pseudouridylate synthase CUC01_10480 PF01668 SmpB protein CUC01_10490 PF00588 SpoU rRNA Methylase family CUC01_10495 PF00285 Citrate synthase, C-terminal domain CUC01_10520 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CUC01_10520 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CUC01_10530 PF00465 Iron-containing alcohol dehydrogenase CUC01_10535 PF07703 Alpha-2-macroglobulin bait region domain CUC01_10535 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CUC01_10535 PF01835 MG2 domain CUC01_10535 PF07678 A-macroglobulin TED domain CUC01_10535 PF00207 Alpha-2-macroglobulin family CUC01_10540 PF17726 Dam-replacing HTH domain CUC01_10540 PF06044 Dam-replacing family CUC01_10545 PF00892 EamA-like transporter family CUC01_10560 PF12705 PD-(D/E)XK nuclease superfamily CUC01_10560 PF00580 UvrD/REP helicase N-terminal domain CUC01_10560 PF13361 UvrD-like helicase C-terminal domain CUC01_10575 PF02163 Peptidase family M50 CUC01_10575 PF17820 PDZ domain CUC01_10580 PF00453 Ribosomal protein L20 CUC01_10585 PF01632 Ribosomal protein L35 CUC01_10590 PF00271 Helicase conserved C-terminal domain CUC01_10590 PF04851 Type III restriction enzyme, res subunit CUC01_10590 PF02151 UvrB/uvrC motif CUC01_10590 PF12344 Ultra-violet resistance protein B CUC01_10590 PF17757 UvrB interaction domain CUC01_10610 PF07690 Major Facilitator Superfamily CUC01_10615 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CUC01_10655 PF04055 Radical SAM superfamily CUC01_10670 PF00444 Ribosomal protein L36 CUC01_10675 PF00561 alpha/beta hydrolase fold CUC01_10695 PF00290 Tryptophan synthase alpha chain CUC01_10705 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CUC01_10710 PF00218 Indole-3-glycerol phosphate synthase CUC01_10715 PF00591 Glycosyl transferase family, a/b domain CUC01_10715 PF02885 Glycosyl transferase family, helical bundle domain CUC01_10720 PF00425 chorismate binding enzyme CUC01_10720 PF04715 Anthranilate synthase component I, N terminal region CUC01_10740 PF03030 Inorganic H+ pyrophosphatase CUC01_10745 PF00248 Aldo/keto reductase family CUC01_10770 PF04851 Type III restriction enzyme, res subunit CUC01_10770 PF08774 VRR-NUC domain CUC01_10775 PF01555 DNA methylase CUC01_10775 PF18273 Type III R-M EcoP15I C-terminal domain CUC01_10785 PF00176 SNF2 family N-terminal domain CUC01_10785 PF00271 Helicase conserved C-terminal domain CUC01_10820 PF00691 OmpA family CUC01_10835 PF13419 Haloacid dehalogenase-like hydrolase CUC01_10845 PF00698 Acyl transferase domain CUC01_10850 PF01196 Ribosomal protein L17 CUC01_10855 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CUC01_10855 PF01000 RNA polymerase Rpb3/RpoA insert domain CUC01_10855 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CUC01_10865 PF01478 Type IV leader peptidase family CUC01_10865 PF06750 Bacterial Peptidase A24 N-terminal domain CUC01_10875 PF07549 SecD/SecF GG Motif CUC01_10875 PF02355 Protein export membrane protein CUC01_10880 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain CUC01_10880 PF01522 Polysaccharide deacetylase CUC01_10915 PF01040 UbiA prenyltransferase family CUC01_10930 PF00749 tRNA synthetases class I (E and Q), catalytic domain CUC01_10935 PF03600 Citrate transporter CUC01_10935 PF02080 TrkA-C domain CUC01_10940 PF00625 Guanylate kinase CUC01_10945 PF03755 YicC-like family, N-terminal region CUC01_10945 PF08340 Domain of unknown function (DUF1732) CUC01_10950 PF00155 Aminotransferase class I and II CUC01_10970 PF02535 ZIP Zinc transporter CUC01_10980 PF00365 Phosphofructokinase CUC01_10985 PF00768 D-alanyl-D-alanine carboxypeptidase CUC01_10985 PF07943 Penicillin-binding protein 5, C-terminal domain CUC01_11000 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CUC01_11005 PF01250 Ribosomal protein S6 CUC01_11015 PF00117 Glutamine amidotransferase class-I CUC01_11020 PF00475 Imidazoleglycerol-phosphate dehydratase CUC01_11035 PF01386 Ribosomal L25p family CUC01_11035 PF14693 Ribosomal protein TL5, C-terminal domain CUC01_11040 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CUC01_11040 PF14572 Phosphoribosyl synthetase-associated domain CUC01_11070 PF02913 FAD linked oxidases, C-terminal domain CUC01_11070 PF01565 FAD binding domain CUC01_11075 PF10502 Signal peptidase, peptidase S26 CUC01_11085 PF13229 Right handed beta helix region CUC01_11095 PF04452 RNA methyltransferase CUC01_11105 PF00684 DnaJ central domain CUC01_11105 PF00226 DnaJ domain CUC01_11105 PF01556 DnaJ C terminal domain CUC01_11115 PF02594 Uncharacterised ACR, YggU family COG1872 CUC01_11120 PF00977 Histidine biosynthesis protein CUC01_11145 PF17760 UvrA interaction domain CUC01_11145 PF17755 UvrA DNA-binding domain CUC01_11145 PF00005 ABC transporter CUC01_11165 PF01960 ArgJ family CUC01_11170 PF01118 Semialdehyde dehydrogenase, NAD binding domain CUC01_11170 PF02774 Semialdehyde dehydrogenase, dimerisation domain CUC01_11180 PF00528 Binding-protein-dependent transport system inner membrane component CUC01_11185 PF00005 ABC transporter CUC01_11205 PF00849 RNA pseudouridylate synthase CUC01_11205 PF01479 S4 domain CUC01_11210 PF00849 RNA pseudouridylate synthase CUC01_11215 PF00881 Nitroreductase family CUC01_11240 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CUC01_11240 PF00056 lactate/malate dehydrogenase, NAD binding domain CUC01_11245 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CUC01_11245 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CUC01_11245 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CUC01_11280 PF01197 Ribosomal protein L31 CUC01_11285 PF11734 TilS substrate C-terminal domain CUC01_11285 PF01171 PP-loop family CUC01_11290 PF07085 DRTGG domain CUC01_11290 PF01515 Phosphate acetyl/butaryl transferase CUC01_11295 PF02811 PHP domain CUC01_11310 PF07690 Major Facilitator Superfamily CUC01_11320 PF00271 Helicase conserved C-terminal domain CUC01_11320 PF02559 CarD-like/TRCF domain CUC01_11320 PF00270 DEAD/DEAH box helicase CUC01_11320 PF03461 TRCF domain CUC01_11320 PF17757 UvrB interaction domain CUC01_11325 PF00069 Protein kinase domain CUC01_11325 PF03793 PASTA domain CUC01_11330 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation CUC01_11330 PF14508 Glycosyl-hydrolase 97 N-terminal CUC01_11330 PF10566 Glycoside hydrolase 97 CUC01_11345 PF00162 Phosphoglycerate kinase CUC01_11350 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CUC01_11350 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CUC01_11355 PF07499 RuvA, C-terminal domain CUC01_11355 PF01330 RuvA N terminal domain CUC01_11370 PF02706 Chain length determinant protein CUC01_11370 PF13614 AAA domain CUC01_11370 PF13807 G-rich domain on putative tyrosine kinase CUC01_11405 PF00118 TCP-1/cpn60 chaperonin family CUC01_11410 PF00166 Chaperonin 10 Kd subunit CUC01_11415 PF00012 Hsp70 protein CUC01_11420 PF00534 Glycosyl transferases group 1 CUC01_11420 PF13439 Glycosyltransferase Family 4 CUC01_11440 PF00586 AIR synthase related protein, N-terminal domain CUC01_11440 PF02769 AIR synthase related protein, C-terminal domain CUC01_11445 PF01924 Hydrogenase formation hypA family CUC01_11450 PF01455 HupF/HypC family CUC01_11455 PF17788 HypF Kae1-like domain CUC01_11455 PF01300 Telomere recombination CUC01_11455 PF07503 HypF finger CUC01_11455 PF00708 Acylphosphatase CUC01_11460 PF02492 CobW/HypB/UreG, nucleotide-binding domain CUC01_11465 PF03129 Anticodon binding domain CUC01_11465 PF13393 Histidyl-tRNA synthetase CUC01_11470 PF01336 OB-fold nucleic acid binding domain CUC01_11470 PF00152 tRNA synthetases class II (D, K and N) CUC01_11470 PF02938 GAD domain CUC01_11500 PF00155 Aminotransferase class I and II CUC01_11505 PF00109 Beta-ketoacyl synthase, N-terminal domain CUC01_11505 PF02801 Beta-ketoacyl synthase, C-terminal domain CUC01_11530 PF04551 GcpE protein CUC01_11540 PF00809 Pterin binding enzyme CUC01_11550 PF01066 CDP-alcohol phosphatidyltransferase CUC01_11555 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CUC01_11555 PF01411 tRNA synthetases class II (A) CUC01_11555 PF02272 DHHA1 domain CUC01_11560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC01_11565 PF00005 ABC transporter CUC01_11590 PF03796 DnaB-like helicase C terminal domain CUC01_11590 PF00772 DnaB-like helicase N terminal domain