locus-tag class description CUB89_00055 PF13539 D-alanyl-D-alanine carboxypeptidase CUB89_00070 PF02386 Cation transport protein CUB89_00075 PF01554 MatE CUB89_00100 PF00398 Ribosomal RNA adenine dimethylase CUB89_00105 PF01370 NAD dependent epimerase/dehydratase family CUB89_00140 PF00884 Sulfatase CUB89_00165 PF14220 Domain of unknown function (DUF4329) CUB89_00165 PF03527 RHS protein CUB89_00165 PF05593 RHS Repeat CUB89_00195 PF00920 Dehydratase family CUB89_00200 PF00486 Transcriptional regulatory protein, C terminal CUB89_00200 PF00072 Response regulator receiver domain CUB89_00205 PF11808 Phosphate regulon sensor protein PhoR CUB89_00205 PF00989 PAS fold CUB89_00205 PF00512 His Kinase A (phospho-acceptor) domain CUB89_00205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUB89_00220 PF08029 HisG, C-terminal domain CUB89_00220 PF01634 ATP phosphoribosyltransferase CUB89_00225 PF00557 Metallopeptidase family M24 CUB89_00225 PF05195 Aminopeptidase P, N-terminal domain CUB89_00235 PF01790 Prolipoprotein diacylglyceryl transferase CUB89_00240 PF05343 M42 glutamyl aminopeptidase CUB89_00265 PF00263 Bacterial type II and III secretion system protein CUB89_00265 PF03958 Bacterial type II/III secretion system short domain CUB89_00270 PF07497 Rho termination factor, RNA-binding domain CUB89_00270 PF07498 Rho termination factor, N-terminal domain CUB89_00270 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUB89_00275 PF00403 Heavy-metal-associated domain CUB89_00280 PF00480 ROK family CUB89_00285 PF14437 MafB19-like deaminase CUB89_00290 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CUB89_00290 PF04055 Radical SAM superfamily CUB89_00295 PF00034 Cytochrome c CUB89_00295 PF03150 Di-haem cytochrome c peroxidase CUB89_00295 PF14376 Haem-binding domain CUB89_00310 PF07670 Nucleoside recognition CUB89_00310 PF02421 Ferrous iron transport protein B CUB89_00310 PF17910 FeoB cytosolic helical domain CUB89_00310 PF07664 Ferrous iron transport protein B C terminus CUB89_00360 PF00588 SpoU rRNA Methylase family CUB89_00360 PF08032 RNA 2'-O ribose methyltransferase substrate binding CUB89_00365 PF02910 Fumarate reductase flavoprotein C-term CUB89_00365 PF00890 FAD binding domain CUB89_00375 PF00534 Glycosyl transferases group 1 CUB89_00390 PF00271 Helicase conserved C-terminal domain CUB89_00390 PF00270 DEAD/DEAH box helicase CUB89_00390 PF00570 HRDC domain CUB89_00390 PF16124 RecQ zinc-binding CUB89_00390 PF09382 RQC domain CUB89_00395 PF16347 Domain of unknown function (DUF4976) CUB89_00395 PF00884 Sulfatase CUB89_00405 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CUB89_00420 PF05221 S-adenosyl-L-homocysteine hydrolase CUB89_00420 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CUB89_00425 PF02772 S-adenosylmethionine synthetase, central domain CUB89_00425 PF02773 S-adenosylmethionine synthetase, C-terminal domain CUB89_00425 PF00438 S-adenosylmethionine synthetase, N-terminal domain CUB89_00430 PF13649 Methyltransferase domain CUB89_00475 PF00873 AcrB/AcrD/AcrF family CUB89_00495 PF02219 Methylenetetrahydrofolate reductase CUB89_00505 PF07244 Surface antigen variable number repeat CUB89_00505 PF01103 Surface antigen CUB89_00510 PF05697 Bacterial trigger factor protein (TF) CUB89_00510 PF05698 Bacterial trigger factor protein (TF) C-terminus CUB89_00510 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CUB89_00515 PF00574 Clp protease CUB89_00520 PF07724 AAA domain (Cdc48 subfamily) CUB89_00520 PF10431 C-terminal, D2-small domain, of ClpB protein CUB89_00520 PF06689 ClpX C4-type zinc finger CUB89_00525 PF00814 Glycoprotease family CUB89_00535 PF00009 Elongation factor Tu GTP binding domain CUB89_00535 PF03143 Elongation factor Tu C-terminal domain CUB89_00535 PF03144 Elongation factor Tu domain 2 CUB89_00550 PF00467 KOW motif CUB89_00550 PF02357 Transcription termination factor nusG CUB89_00555 PF00298 Ribosomal protein L11, RNA binding domain CUB89_00555 PF03946 Ribosomal protein L11, N-terminal domain CUB89_00560 PF00687 Ribosomal protein L1p/L10e family CUB89_00565 PF00466 Ribosomal protein L10 CUB89_00570 PF16320 Ribosomal protein L7/L12 dimerisation domain CUB89_00570 PF00542 Ribosomal protein L7/L12 C-terminal domain CUB89_00575 PF04560 RNA polymerase Rpb2, domain 7 CUB89_00575 PF00562 RNA polymerase Rpb2, domain 6 CUB89_00575 PF04563 RNA polymerase beta subunit CUB89_00575 PF10385 RNA polymerase beta subunit external 1 domain CUB89_00575 PF04565 RNA polymerase Rpb2, domain 3 CUB89_00575 PF04561 RNA polymerase Rpb2, domain 2 CUB89_00580 PF04983 RNA polymerase Rpb1, domain 3 CUB89_00580 PF05000 RNA polymerase Rpb1, domain 4 CUB89_00580 PF00623 RNA polymerase Rpb1, domain 2 CUB89_00580 PF04998 RNA polymerase Rpb1, domain 5 CUB89_00580 PF04997 RNA polymerase Rpb1, domain 1 CUB89_00605 PF03144 Elongation factor Tu domain 2 CUB89_00605 PF00679 Elongation factor G C-terminus CUB89_00605 PF00009 Elongation factor Tu GTP binding domain CUB89_00605 PF06421 GTP-binding protein LepA C-terminus CUB89_00615 PF00884 Sulfatase CUB89_00615 PF16347 Domain of unknown function (DUF4976) CUB89_00620 PF00728 Glycosyl hydrolase family 20, catalytic domain CUB89_00620 PF02838 Glycosyl hydrolase family 20, domain 2 CUB89_00625 PF01406 tRNA synthetases class I (C) catalytic domain CUB89_00625 PF09190 DALR domain CUB89_00635 PF00892 EamA-like transporter family CUB89_00640 PF16326 ABC transporter C-terminal domain CUB89_00640 PF12848 ABC transporter CUB89_00640 PF00005 ABC transporter CUB89_00645 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CUB89_00675 PF01914 MarC family integral membrane protein CUB89_00680 PF00561 alpha/beta hydrolase fold CUB89_00715 PF00072 Response regulator receiver domain CUB89_00715 PF04397 LytTr DNA-binding domain CUB89_00730 PF16338 Domain of unknown function (DUF4968) CUB89_00730 PF17137 Domain of unknown function (DUF5110) CUB89_00730 PF13802 Galactose mutarotase-like CUB89_00730 PF01055 Glycosyl hydrolases family 31 CUB89_00740 PF00248 Aldo/keto reductase family CUB89_00750 PF12146 Serine aminopeptidase, S33 CUB89_00765 PF00571 CBS domain CUB89_00765 PF03471 Transporter associated domain CUB89_00765 PF01595 Cyclin M transmembrane N-terminal domain CUB89_00780 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CUB89_00780 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CUB89_00790 PF16326 ABC transporter C-terminal domain CUB89_00790 PF00005 ABC transporter CUB89_00790 PF12848 ABC transporter CUB89_00825 PF12631 MnmE helical domain CUB89_00825 PF10396 GTP-binding protein TrmE N-terminus CUB89_00825 PF01926 50S ribosome-binding GTPase CUB89_00835 PF03458 UPF0126 domain CUB89_00840 PF10996 Beta-Casp domain CUB89_00840 PF00753 Metallo-beta-lactamase superfamily CUB89_00840 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CUB89_00845 PF02381 MraZ protein, putative antitoxin-like CUB89_00850 PF01795 MraW methylase family CUB89_00860 PF03793 PASTA domain CUB89_00860 PF03717 Penicillin-binding Protein dimerisation domain CUB89_00860 PF00905 Penicillin binding protein transpeptidase domain CUB89_00865 PF08245 Mur ligase middle domain CUB89_00865 PF02875 Mur ligase family, glutamate ligase domain CUB89_00865 PF01225 Mur ligase family, catalytic domain CUB89_00870 PF08245 Mur ligase middle domain CUB89_00870 PF02875 Mur ligase family, glutamate ligase domain CUB89_00870 PF01225 Mur ligase family, catalytic domain CUB89_00875 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CUB89_00875 PF00953 Glycosyl transferase family 4 CUB89_00880 PF08245 Mur ligase middle domain CUB89_00880 PF02875 Mur ligase family, glutamate ligase domain CUB89_00895 PF01098 Cell cycle protein CUB89_00900 PF01098 Cell cycle protein CUB89_00905 PF04101 Glycosyltransferase family 28 C-terminal domain CUB89_00905 PF03033 Glycosyltransferase family 28 N-terminal domain CUB89_00910 PF01225 Mur ligase family, catalytic domain CUB89_00910 PF02875 Mur ligase family, glutamate ligase domain CUB89_00910 PF08245 Mur ligase middle domain CUB89_00915 PF01820 D-ala D-ala ligase N-terminus CUB89_00915 PF07478 D-ala D-ala ligase C-terminus CUB89_00925 PF00154 recA bacterial DNA recombination protein CUB89_00930 PF01520 N-acetylmuramoyl-L-alanine amidase CUB89_00935 PF03099 Biotin/lipoate A/B protein ligase family CUB89_00940 PF00330 Aconitase family (aconitate hydratase) CUB89_00945 PF00694 Aconitase C-terminal domain CUB89_00955 PF13180 PDZ domain CUB89_00955 PF17820 PDZ domain CUB89_00965 PF01761 3-dehydroquinate synthase CUB89_00975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUB89_00975 PF00005 ABC transporter CUB89_00985 PF00889 Elongation factor TS CUB89_01000 PF00793 DAHP synthetase I family CUB89_01015 PF12399 Branched-chain amino acid ATP-binding cassette transporter CUB89_01015 PF00005 ABC transporter CUB89_01025 PF08245 Mur ligase middle domain CUB89_01025 PF02875 Mur ligase family, glutamate ligase domain CUB89_01025 PF01225 Mur ligase family, catalytic domain CUB89_01030 PF00691 OmpA family CUB89_01035 PF00580 UvrD/REP helicase N-terminal domain CUB89_01035 PF13361 UvrD-like helicase C-terminal domain CUB89_01055 PF00152 tRNA synthetases class II (D, K and N) CUB89_01055 PF01336 OB-fold nucleic acid binding domain CUB89_01065 PF00085 Thioredoxin CUB89_01110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUB89_01110 PF03466 LysR substrate binding domain CUB89_01115 PF03601 Conserved hypothetical protein 698 CUB89_01120 PF00266 Aminotransferase class-V CUB89_01135 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CUB89_01135 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CUB89_01135 PF01842 ACT domain CUB89_01145 PF04055 Radical SAM superfamily CUB89_01150 PF07498 Rho termination factor, N-terminal domain CUB89_01150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUB89_01150 PF07497 Rho termination factor, RNA-binding domain CUB89_01155 PF01709 Transcriptional regulator CUB89_01160 PF16916 Dimerisation domain of Zinc Transporter CUB89_01160 PF01545 Cation efflux family CUB89_01165 PF00999 Sodium/hydrogen exchanger family CUB89_01165 PF02254 TrkA-N domain CUB89_01175 PF02547 Queuosine biosynthesis protein CUB89_01180 PF12127 SigmaW regulon antibacterial CUB89_01190 PF05690 Thiazole biosynthesis protein ThiG CUB89_01195 PF13520 Amino acid permease CUB89_01205 PF01594 AI-2E family transporter CUB89_01210 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CUB89_01210 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CUB89_01215 PF01116 Fructose-bisphosphate aldolase class-II CUB89_01225 PF01063 Amino-transferase class IV CUB89_01230 PF00722 Glycosyl hydrolases family 16 CUB89_01235 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CUB89_01235 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CUB89_01255 PF01926 50S ribosome-binding GTPase CUB89_01255 PF01018 GTP1/OBG CUB89_01260 PF01636 Phosphotransferase enzyme family CUB89_01310 PF01451 Low molecular weight phosphotyrosine protein phosphatase CUB89_01315 PF00478 IMP dehydrogenase / GMP reductase domain CUB89_01315 PF00571 CBS domain CUB89_01320 PF00117 Glutamine amidotransferase class-I CUB89_01320 PF00958 GMP synthase C terminal domain CUB89_01320 PF02540 NAD synthase CUB89_01325 PF00145 C-5 cytosine-specific DNA methylase CUB89_01325 PF01381 Helix-turn-helix CUB89_01330 PF09217 Restriction endonuclease EcoRII, N-terminal CUB89_01330 PF09019 EcoRII C terminal CUB89_01335 PF03852 DNA mismatch endonuclease Vsr CUB89_01340 PF12464 Maltose acetyltransferase CUB89_01340 PF14602 Hexapeptide repeat of succinyl-transferase CUB89_01345 PF13419 Haloacid dehalogenase-like hydrolase CUB89_01365 PF00793 DAHP synthetase I family CUB89_01370 PF07963 Prokaryotic N-terminal methylation motif CUB89_01370 PF00114 Pilin (bacterial filament) CUB89_01380 PF02261 Aspartate decarboxylase CUB89_01385 PF01687 Riboflavin kinase CUB89_01385 PF06574 FAD synthetase CUB89_01390 PF16198 tRNA pseudouridylate synthase B C-terminal domain CUB89_01390 PF01509 TruB family pseudouridylate synthase (N terminal domain) CUB89_01405 PF00149 Calcineurin-like phosphoesterase CUB89_01410 PF01501 Glycosyl transferase family 8 CUB89_01410 PF08759 Glycosyltransferase GT-D fold CUB89_01415 PF00535 Glycosyl transferase family 2 CUB89_01415 PF01501 Glycosyl transferase family 8 CUB89_01425 PF01370 NAD dependent epimerase/dehydratase family CUB89_01430 PF00535 Glycosyl transferase family 2 CUB89_01450 PF01757 Acyltransferase family CUB89_01470 PF03600 Citrate transporter CUB89_01470 PF02080 TrkA-C domain CUB89_01505 PF01301 Glycosyl hydrolases family 35 CUB89_01510 PF00300 Histidine phosphatase superfamily (branch 1) CUB89_01515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CUB89_01515 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CUB89_01520 PF01757 Acyltransferase family CUB89_01525 PF07690 Major Facilitator Superfamily CUB89_01530 PF03061 Thioesterase superfamily CUB89_01550 PF00565 Staphylococcal nuclease homologue CUB89_01560 PF02195 ParB-like nuclease domain CUB89_01565 PF01507 Phosphoadenosine phosphosulfate reductase family CUB89_01565 PF11922 Domain of unknown function (DUF3440) CUB89_01625 PF06067 Domain of unknown function (DUF932) CUB89_01630 PF03852 DNA mismatch endonuclease Vsr CUB89_01640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUB89_01640 PF00072 Response regulator receiver domain CUB89_01645 PF00145 C-5 cytosine-specific DNA methylase CUB89_01700 PF13173 AAA domain CUB89_01700 PF13635 Domain of unknown function (DUF4143) CUB89_01715 PF00180 Isocitrate/isopropylmalate dehydrogenase CUB89_01730 PF01078 Magnesium chelatase, subunit ChlI CUB89_01730 PF13335 Magnesium chelatase, subunit ChlI C-terminal CUB89_01740 PF01053 Cys/Met metabolism PLP-dependent enzyme CUB89_01750 PF04055 Radical SAM superfamily CUB89_01750 PF13186 Iron-sulfur cluster-binding domain CUB89_01765 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CUB89_01765 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CUB89_01770 PF02660 Glycerol-3-phosphate acyltransferase CUB89_01780 PF00152 tRNA synthetases class II (D, K and N) CUB89_01780 PF01336 OB-fold nucleic acid binding domain CUB89_01805 PF01638 HxlR-like helix-turn-helix CUB89_01815 PF00977 Histidine biosynthesis protein CUB89_01825 PF02386 Cation transport protein CUB89_01835 PF11898 Domain of unknown function (DUF3418) CUB89_01835 PF04408 Helicase associated domain (HA2) CUB89_01835 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CUB89_01835 PF00270 DEAD/DEAH box helicase CUB89_01835 PF00271 Helicase conserved C-terminal domain CUB89_01840 PF10369 Small subunit of acetolactate synthase CUB89_01845 PF13180 PDZ domain CUB89_01845 PF00595 PDZ domain CUB89_01855 PF13932 GidA associated domain CUB89_01855 PF01134 Glucose inhibited division protein A CUB89_01860 PF01872 RibD C-terminal domain CUB89_01860 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CUB89_01865 PF00483 Nucleotidyl transferase CUB89_01865 PF00132 Bacterial transferase hexapeptide (six repeats) CUB89_01875 PF02768 DNA polymerase III beta subunit, C-terminal domain CUB89_01875 PF02767 DNA polymerase III beta subunit, central domain CUB89_01875 PF00712 DNA polymerase III beta subunit, N-terminal domain CUB89_01900 PF01476 LysM domain CUB89_01900 PF00877 NlpC/P60 family CUB89_01905 PF01026 TatD related DNase CUB89_01915 PF02837 Glycosyl hydrolases family 2, sugar binding domain CUB89_01915 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CUB89_01915 PF00703 Glycosyl hydrolases family 2 CUB89_01915 PF16353 Domain of unknown function(DUF4981) CUB89_01915 PF02929 Beta galactosidase small chain CUB89_01930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUB89_01930 PF13492 GAF domain CUB89_01930 PF00512 His Kinase A (phospho-acceptor) domain CUB89_01930 PF13493 Domain of unknown function (DUF4118) CUB89_01930 PF02702 Osmosensitive K+ channel His kinase sensor domain CUB89_01935 PF00072 Response regulator receiver domain CUB89_01935 PF00486 Transcriptional regulatory protein, C terminal CUB89_01945 PF03814 Potassium-transporting ATPase A subunit CUB89_01955 PF02669 K+-transporting ATPase, c chain CUB89_01970 PF00004 ATPase family associated with various cellular activities (AAA) CUB89_01970 PF10431 C-terminal, D2-small domain, of ClpB protein CUB89_01970 PF07724 AAA domain (Cdc48 subfamily) CUB89_01970 PF17871 AAA lid domain CUB89_01970 PF02861 Clp amino terminal domain, pathogenicity island component CUB89_02020 PF03477 ATP cone domain CUB89_02030 PF01740 STAS domain CUB89_02030 PF00916 Sulfate permease family CUB89_02035 PF00206 Lyase CUB89_02035 PF14698 Argininosuccinate lyase C-terminal CUB89_02050 PF00113 Enolase, C-terminal TIM barrel domain CUB89_02050 PF03952 Enolase, N-terminal domain CUB89_02055 PF01261 Xylose isomerase-like TIM barrel CUB89_02060 PF13088 BNR repeat-like domain CUB89_02060 PF02973 Sialidase, N-terminal domain CUB89_02060 PF00754 F5/8 type C domain CUB89_02065 PF01966 HD domain CUB89_02065 PF01336 OB-fold nucleic acid binding domain CUB89_02075 PF04055 Radical SAM superfamily CUB89_02075 PF00919 Uncharacterized protein family UPF0004 CUB89_02075 PF01938 TRAM domain CUB89_02080 PF01938 TRAM domain CUB89_02080 PF05958 tRNA (Uracil-5-)-methyltransferase CUB89_02120 PF00216 Bacterial DNA-binding protein CUB89_02125 PF16875 Glycosyl hydrolase family 36 N-terminal domain CUB89_02125 PF16874 Glycosyl hydrolase family 36 C-terminal domain CUB89_02145 PF06826 Predicted Permease Membrane Region CUB89_02145 PF02080 TrkA-C domain CUB89_02155 PF00989 PAS fold CUB89_02155 PF00512 His Kinase A (phospho-acceptor) domain CUB89_02155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUB89_02160 PF00939 Sodium:sulfate symporter transmembrane region CUB89_02185 PF08019 Phosphoethanolamine transferase EptA/EptB CUB89_02185 PF00884 Sulfatase CUB89_02195 PF02915 Rubrerythrin CUB89_02205 PF05343 M42 glutamyl aminopeptidase CUB89_02210 PF07691 PA14 domain CUB89_02210 PF00728 Glycosyl hydrolase family 20, catalytic domain CUB89_02210 PF02838 Glycosyl hydrolase family 20, domain 2 CUB89_02220 PF00245 Alkaline phosphatase CUB89_02225 PF01741 Large-conductance mechanosensitive channel, MscL CUB89_02230 PF00202 Aminotransferase class-III CUB89_02240 PF09285 Elongation factor P, C-terminal CUB89_02240 PF08207 Elongation factor P (EF-P) KOW-like domain CUB89_02240 PF01132 Elongation factor P (EF-P) OB domain CUB89_02250 PF00403 Heavy-metal-associated domain CUB89_02255 PF02463 RecF/RecN/SMC N terminal domain CUB89_02260 PF12706 Beta-lactamase superfamily domain CUB89_02260 PF03099 Biotin/lipoate A/B protein ligase family CUB89_02265 PF03808 Glycosyl transferase WecB/TagA/CpsF family CUB89_02295 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CUB89_02295 PF00364 Biotin-requiring enzyme CUB89_02295 PF02817 e3 binding domain CUB89_02300 PF02779 Transketolase, pyrimidine binding domain CUB89_02300 PF02780 Transketolase, C-terminal domain CUB89_02305 PF02779 Transketolase, pyrimidine binding domain CUB89_02305 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CUB89_02305 PF02780 Transketolase, C-terminal domain CUB89_02310 PF13411 MerR HTH family regulatory protein CUB89_02315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUB89_02315 PF00529 HlyD membrane-fusion protein of T1SS CUB89_02320 PF00873 AcrB/AcrD/AcrF family CUB89_02355 PF01751 Toprim domain CUB89_02355 PF01131 DNA topoisomerase CUB89_02380 PF01471 Putative peptidoglycan binding domain CUB89_02380 PF01510 N-acetylmuramoyl-L-alanine amidase CUB89_02380 PF01476 LysM domain CUB89_02385 PF00330 Aconitase family (aconitate hydratase) CUB89_02385 PF00694 Aconitase C-terminal domain CUB89_02395 PF01641 SelR domain CUB89_02395 PF01625 Peptide methionine sulfoxide reductase CUB89_02410 PF01139 tRNA-splicing ligase RtcB CUB89_02420 PF07690 Major Facilitator Superfamily CUB89_02430 PF01923 Cobalamin adenosyltransferase CUB89_02440 PF17876 Cold shock domain CUB89_02440 PF00773 RNB domain CUB89_02440 PF00575 S1 RNA binding domain CUB89_02440 PF08206 Ribonuclease B OB domain CUB89_02445 PF00575 S1 RNA binding domain CUB89_02445 PF08206 Ribonuclease B OB domain CUB89_02445 PF17876 Cold shock domain CUB89_02445 PF00773 RNB domain CUB89_02470 PF01136 Peptidase family U32 CUB89_02470 PF12392 Collagenase CUB89_02475 PF08245 Mur ligase middle domain CUB89_02475 PF02875 Mur ligase family, glutamate ligase domain CUB89_02490 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CUB89_02495 PF12419 SNF2 Helicase protein CUB89_02495 PF00176 SNF2 family N-terminal domain CUB89_02495 PF00271 Helicase conserved C-terminal domain CUB89_02500 PF00149 Calcineurin-like phosphoesterase CUB89_02500 PF02872 5'-nucleotidase, C-terminal domain CUB89_02505 PF03330 Lytic transglycolase CUB89_02505 PF05036 Sporulation related domain CUB89_02510 PF01513 ATP-NAD kinase CUB89_02515 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CUB89_02515 PF00467 KOW motif CUB89_02520 PF00673 ribosomal L5P family C-terminus CUB89_02520 PF00281 Ribosomal protein L5 CUB89_02525 PF00410 Ribosomal protein S8 CUB89_02530 PF00347 Ribosomal protein L6 CUB89_02535 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CUB89_02540 PF03719 Ribosomal protein S5, C-terminal domain CUB89_02540 PF00333 Ribosomal protein S5, N-terminal domain CUB89_02545 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CUB89_02550 PF00344 SecY translocase CUB89_02555 PF05191 Adenylate kinase, active site lid CUB89_02560 PF00557 Metallopeptidase family M24 CUB89_02575 PF17941 Polyphosphate kinase C-terminal domain 1 CUB89_02575 PF02503 Polyphosphate kinase middle domain CUB89_02575 PF13090 Polyphosphate kinase C-terminal domain 2 CUB89_02575 PF13089 Polyphosphate kinase N-terminal domain CUB89_02580 PF01501 Glycosyl transferase family 8 CUB89_02590 PF00535 Glycosyl transferase family 2 CUB89_02595 PF01531 Glycosyl transferase family 11 CUB89_02600 PF00535 Glycosyl transferase family 2 CUB89_02615 PF00535 Glycosyl transferase family 2 CUB89_02620 PF01965 DJ-1/PfpI family CUB89_02625 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CUB89_02625 PF00364 Biotin-requiring enzyme CUB89_02625 PF02817 e3 binding domain CUB89_02630 PF01979 Amidohydrolase family CUB89_02635 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CUB89_02645 PF02554 Carbon starvation protein CstA CUB89_02660 PF00884 Sulfatase CUB89_02665 PF02033 Ribosome-binding factor A CUB89_02670 PF11987 Translation-initiation factor 2 CUB89_02670 PF04760 Translation initiation factor IF-2, N-terminal region CUB89_02670 PF00009 Elongation factor Tu GTP binding domain CUB89_02675 PF00575 S1 RNA binding domain CUB89_02675 PF08529 NusA N-terminal domain CUB89_02675 PF13184 NusA-like KH domain CUB89_02680 PF03372 Endonuclease/Exonuclease/phosphatase family CUB89_02685 PF01725 Ham1 family CUB89_02690 PF06962 Putative rRNA methylase CUB89_02695 PF04015 Domain of unknown function (DUF362) CUB89_02705 PF01061 ABC-2 type transporter CUB89_02705 PF00005 ABC transporter CUB89_02705 PF00498 FHA domain CUB89_02725 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CUB89_02730 PF02397 Bacterial sugar transferase CUB89_02735 PF08544 GHMP kinases C terminal CUB89_02735 PF10509 Galactokinase galactose-binding signature CUB89_02735 PF00288 GHMP kinases N terminal domain CUB89_02740 PF00474 Sodium:solute symporter family CUB89_02745 PF00580 UvrD/REP helicase N-terminal domain CUB89_02745 PF13361 UvrD-like helicase C-terminal domain CUB89_02750 PF00551 Formyl transferase CUB89_02750 PF02911 Formyl transferase, C-terminal domain CUB89_02760 PF03309 Type III pantothenate kinase CUB89_02765 PF00550 Phosphopantetheine attachment site CUB89_02780 PF02580 D-Tyr-tRNA(Tyr) deacylase CUB89_02810 PF13085 2Fe-2S iron-sulfur cluster binding domain CUB89_02815 PF02910 Fumarate reductase flavoprotein C-term CUB89_02815 PF00890 FAD binding domain CUB89_02865 PF01757 Acyltransferase family CUB89_02875 PF00534 Glycosyl transferases group 1 CUB89_02900 PF00535 Glycosyl transferase family 2 CUB89_02905 PF00535 Glycosyl transferase family 2 CUB89_02910 PF00667 FAD binding domain CUB89_02910 PF00258 Flavodoxin CUB89_02910 PF00175 Oxidoreductase NAD-binding domain CUB89_02915 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CUB89_02915 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CUB89_02920 PF17864 RuvB AAA lid domain CUB89_02920 PF05496 Holliday junction DNA helicase RuvB P-loop domain CUB89_02920 PF05491 RuvB C-terminal winged helix domain CUB89_02935 PF13614 AAA domain CUB89_02980 PF13859 BNR repeat-like domain CUB89_02990 PF00893 Small Multidrug Resistance protein CUB89_02995 PF00795 Carbon-nitrogen hydrolase CUB89_02995 PF02540 NAD synthase CUB89_03000 PF08241 Methyltransferase domain CUB89_03015 PF02142 MGS-like domain CUB89_03015 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CUB89_03015 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUB89_03030 PF09115 DNA polymerase III, delta subunit, C terminal CUB89_03035 PF01502 Phosphoribosyl-AMP cyclohydrolase CUB89_03050 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CUB89_03055 PF03372 Endonuclease/Exonuclease/phosphatase family CUB89_03110 PF00589 Phage integrase family CUB89_03110 PF02899 Phage integrase, N-terminal SAM-like domain CUB89_03120 PF14622 Ribonuclease-III-like CUB89_03120 PF00035 Double-stranded RNA binding motif CUB89_03130 PF02463 RecF/RecN/SMC N terminal domain CUB89_03140 PF02224 Cytidylate kinase CUB89_03150 PF00586 AIR synthase related protein, N-terminal domain CUB89_03150 PF02769 AIR synthase related protein, C-terminal domain CUB89_03165 PF00069 Protein kinase domain CUB89_03170 PF01926 50S ribosome-binding GTPase CUB89_03170 PF13167 GTP-binding GTPase N-terminal CUB89_03170 PF16360 GTP-binding GTPase Middle Region CUB89_03175 PF02545 Maf-like protein CUB89_03180 PF00585 C-terminal regulatory domain of Threonine dehydratase CUB89_03180 PF00291 Pyridoxal-phosphate dependent enzyme CUB89_03205 PF03734 L,D-transpeptidase catalytic domain CUB89_03210 PF01118 Semialdehyde dehydrogenase, NAD binding domain CUB89_03210 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain CUB89_03230 PF01717 Cobalamin-independent synthase, Catalytic domain CUB89_03230 PF08267 Cobalamin-independent synthase, N-terminal domain CUB89_03235 PF02219 Methylenetetrahydrofolate reductase CUB89_03240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUB89_03240 PF03466 LysR substrate binding domain CUB89_03245 PF02677 Epoxyqueuosine reductase QueH CUB89_03250 PF05193 Peptidase M16 inactive domain CUB89_03250 PF00675 Insulinase (Peptidase family M16) CUB89_03260 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CUB89_03275 PF01612 3'-5' exonuclease CUB89_03275 PF00570 HRDC domain CUB89_03285 PF03819 MazG nucleotide pyrophosphohydrolase domain CUB89_03315 PF00884 Sulfatase CUB89_03330 PF00121 Triosephosphate isomerase CUB89_03335 PF01029 NusB family CUB89_03335 PF01189 16S rRNA methyltransferase RsmB/F CUB89_03340 PF00884 Sulfatase CUB89_03345 PF00764 Arginosuccinate synthase CUB89_03365 PF00253 Ribosomal protein S14p/S29e CUB89_03375 PF01595 Cyclin M transmembrane N-terminal domain CUB89_03375 PF00571 CBS domain CUB89_03375 PF03471 Transporter associated domain CUB89_03380 PF01351 Ribonuclease HII CUB89_03385 PF02021 Uncharacterised protein family UPF0102 CUB89_03395 PF00218 Indole-3-glycerol phosphate synthase CUB89_03420 PF00730 HhH-GPD superfamily base excision DNA repair protein CUB89_03435 PF02472 Biopolymer transport protein ExbD/TolR CUB89_03465 PF10150 Ribonuclease E/G family CUB89_03465 PF00575 S1 RNA binding domain CUB89_03475 PF00703 Glycosyl hydrolases family 2 CUB89_03475 PF02837 Glycosyl hydrolases family 2, sugar binding domain CUB89_03475 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CUB89_03475 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CUB89_03485 PF05343 M42 glutamyl aminopeptidase CUB89_03500 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CUB89_03500 PF00586 AIR synthase related protein, N-terminal domain CUB89_03500 PF02769 AIR synthase related protein, C-terminal domain CUB89_03510 PF01259 SAICAR synthetase CUB89_03520 PF03449 Transcription elongation factor, N-terminal CUB89_03520 PF01272 Transcription elongation factor, GreA/GreB, C-term CUB89_03525 PF02780 Transketolase, C-terminal domain CUB89_03525 PF02779 Transketolase, pyrimidine binding domain CUB89_03525 PF00456 Transketolase, thiamine diphosphate binding domain CUB89_03530 PF01472 PUA domain CUB89_03530 PF00696 Amino acid kinase family CUB89_03535 PF00171 Aldehyde dehydrogenase family CUB89_03545 PF06426 Serine acetyltransferase, N-terminal CUB89_03545 PF00132 Bacterial transferase hexapeptide (six repeats) CUB89_03565 PF01380 SIS domain CUB89_03565 PF00571 CBS domain CUB89_03570 PF00899 ThiF family CUB89_03610 PF03717 Penicillin-binding Protein dimerisation domain CUB89_03610 PF00905 Penicillin binding protein transpeptidase domain CUB89_03620 PF00119 ATP synthase A chain CUB89_03625 PF00137 ATP synthase subunit C CUB89_03630 PF00430 ATP synthase B/B' CF(0) CUB89_03635 PF00213 ATP synthase delta (OSCP) subunit CUB89_03640 PF02874 ATP synthase alpha/beta family, beta-barrel domain CUB89_03640 PF00306 ATP synthase alpha/beta chain, C terminal domain CUB89_03640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUB89_03645 PF00231 ATP synthase CUB89_03650 PF02874 ATP synthase alpha/beta family, beta-barrel domain CUB89_03650 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUB89_03655 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CUB89_03655 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CUB89_03675 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CUB89_03685 PF00535 Glycosyl transferase family 2 CUB89_03715 PF00202 Aminotransferase class-III CUB89_03720 PF06968 Biotin and Thiamin Synthesis associated domain CUB89_03720 PF04055 Radical SAM superfamily CUB89_03725 PF00884 Sulfatase CUB89_03735 PF01458 Uncharacterized protein family (UPF0051) CUB89_03740 PF01458 Uncharacterized protein family (UPF0051) CUB89_03745 PF00005 ABC transporter CUB89_03750 PF01475 Ferric uptake regulator family CUB89_03755 PF01016 Ribosomal L27 protein CUB89_03765 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CUB89_03770 PF12146 Serine aminopeptidase, S33 CUB89_03780 PF08305 NPCBM/NEW2 domain CUB89_03790 PF03976 Polyphosphate kinase 2 (PPK2) CUB89_03820 PF03193 RsgA GTPase CUB89_03825 PF02441 Flavoprotein CUB89_03825 PF04127 DNA / pantothenate metabolism flavoprotein CUB89_03830 PF00266 Aminotransferase class-V CUB89_03845 PF00455 DeoR C terminal sensor domain CUB89_03845 PF08220 DeoR-like helix-turn-helix domain CUB89_03850 PF03976 Polyphosphate kinase 2 (PPK2) CUB89_03870 PF02441 Flavoprotein CUB89_03890 PF04542 Sigma-70 region 2 CUB89_03890 PF08281 Sigma-70, region 4 CUB89_03895 PF00156 Phosphoribosyl transferase domain CUB89_03900 PF02769 AIR synthase related protein, C-terminal domain CUB89_03900 PF00586 AIR synthase related protein, N-terminal domain CUB89_03905 PF07681 DoxX CUB89_03925 PF00270 DEAD/DEAH box helicase CUB89_03925 PF03880 DbpA RNA binding domain CUB89_03925 PF00271 Helicase conserved C-terminal domain CUB89_03935 PF00884 Sulfatase CUB89_03935 PF16385 Domain of unknown function CUB89_03950 PF02347 Glycine cleavage system P-protein CUB89_03955 PF01597 Glycine cleavage H-protein CUB89_03965 PF06071 Protein of unknown function (DUF933) CUB89_03965 PF01926 50S ribosome-binding GTPase CUB89_03970 PF07943 Penicillin-binding protein 5, C-terminal domain CUB89_03970 PF00768 D-alanyl-D-alanine carboxypeptidase CUB89_03975 PF17782 DprA winged helix domain CUB89_03975 PF02481 DNA recombination-mediator protein A CUB89_03990 PF08331 Domain of unknown function (DUF1730) CUB89_03995 PF00416 Ribosomal protein S13/S18 CUB89_04000 PF00411 Ribosomal protein S11 CUB89_04005 PF00163 Ribosomal protein S4/S9 N-terminal domain CUB89_04005 PF01479 S4 domain CUB89_04030 PF00583 Acetyltransferase (GNAT) family CUB89_04035 PF00224 Pyruvate kinase, barrel domain CUB89_04035 PF02887 Pyruvate kinase, alpha/beta domain CUB89_04035 PF00391 PEP-utilising enzyme, mobile domain CUB89_04040 PF00994 Probable molybdopterin binding domain CUB89_04040 PF18146 Damage-inducible protein CinA KH domain CUB89_04040 PF02464 Competence-damaged protein CUB89_04045 PF04191 Phospholipid methyltransferase CUB89_04055 PF03796 DnaB-like helicase C terminal domain CUB89_04055 PF00772 DnaB-like helicase N terminal domain CUB89_04060 PF04055 Radical SAM superfamily CUB89_04065 PF02881 SRP54-type protein, helical bundle domain CUB89_04065 PF00448 SRP54-type protein, GTPase domain CUB89_04070 PF01029 NusB family CUB89_04075 PF00885 6,7-dimethyl-8-ribityllumazine synthase CUB89_04080 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CUB89_04080 PF00925 GTP cyclohydrolase II CUB89_04095 PF00083 Sugar (and other) transporter CUB89_04110 PF00202 Aminotransferase class-III CUB89_04115 PF01165 Ribosomal protein S21 CUB89_04125 PF01467 Cytidylyltransferase-like CUB89_04125 PF00294 pfkB family carbohydrate kinase CUB89_04130 PF13580 SIS domain CUB89_04140 PF02838 Glycosyl hydrolase family 20, domain 2 CUB89_04140 PF07555 beta-N-acetylglucosaminidase CUB89_04155 PF00005 ABC transporter CUB89_04160 PF00528 Binding-protein-dependent transport system inner membrane component CUB89_04165 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CUB89_04165 PF00132 Bacterial transferase hexapeptide (six repeats) CUB89_04175 PF02569 Pantoate-beta-alanine ligase CUB89_04180 PF00005 ABC transporter CUB89_04195 PF02457 DisA bacterial checkpoint controller nucleotide-binding CUB89_04205 PF07691 PA14 domain CUB89_04205 PF02838 Glycosyl hydrolase family 20, domain 2 CUB89_04205 PF00728 Glycosyl hydrolase family 20, catalytic domain CUB89_04215 PF01138 3' exoribonuclease family, domain 1 CUB89_04215 PF03725 3' exoribonuclease family, domain 2 CUB89_04220 PF07963 Prokaryotic N-terminal methylation motif CUB89_04220 PF14245 Type IV pilin PilA CUB89_04235 PF01467 Cytidylyltransferase-like CUB89_04240 PF01416 tRNA pseudouridine synthase CUB89_04275 PF00312 Ribosomal protein S15 CUB89_04280 PF00013 KH domain CUB89_04280 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CUB89_04280 PF01138 3' exoribonuclease family, domain 1 CUB89_04280 PF03725 3' exoribonuclease family, domain 2 CUB89_04280 PF00575 S1 RNA binding domain CUB89_04290 PF01595 Cyclin M transmembrane N-terminal domain CUB89_04290 PF00571 CBS domain CUB89_04290 PF03471 Transporter associated domain CUB89_04295 PF03471 Transporter associated domain CUB89_04295 PF01595 Cyclin M transmembrane N-terminal domain CUB89_04295 PF00571 CBS domain CUB89_04315 PF02581 Thiamine monophosphate synthase CUB89_04320 PF01180 Dihydroorotate dehydrogenase CUB89_04325 PF01336 OB-fold nucleic acid binding domain CUB89_04325 PF02811 PHP domain CUB89_04325 PF14579 Helix-hairpin-helix motif CUB89_04325 PF07733 Bacterial DNA polymerase III alpha NTPase domain CUB89_04325 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CUB89_04335 PF00282 Pyridoxal-dependent decarboxylase conserved domain CUB89_04350 PF07691 PA14 domain CUB89_04350 PF02838 Glycosyl hydrolase family 20, domain 2 CUB89_04350 PF00728 Glycosyl hydrolase family 20, catalytic domain CUB89_04360 PF00654 Voltage gated chloride channel CUB89_04365 PF01590 GAF domain CUB89_04365 PF00158 Sigma-54 interaction domain CUB89_04365 PF02954 Bacterial regulatory protein, Fis family CUB89_04380 PF00106 short chain dehydrogenase CUB89_04390 PF00005 ABC transporter CUB89_04390 PF12857 TOBE-like domain CUB89_04405 PF00005 ABC transporter CUB89_04405 PF02687 FtsX-like permease family CUB89_04405 PF12704 MacB-like periplasmic core domain CUB89_04445 PF00378 Enoyl-CoA hydratase/isomerase CUB89_04460 PF00004 ATPase family associated with various cellular activities (AAA) CUB89_04460 PF17862 AAA+ lid domain CUB89_04460 PF01434 Peptidase family M41 CUB89_04470 PF01580 FtsK/SpoIIIE family CUB89_04470 PF09397 Ftsk gamma domain CUB89_04470 PF17854 FtsK alpha domain CUB89_04525 PF01590 GAF domain CUB89_04525 PF00158 Sigma-54 interaction domain CUB89_04525 PF02954 Bacterial regulatory protein, Fis family CUB89_04530 PF01624 MutS domain I CUB89_04530 PF05188 MutS domain II CUB89_04530 PF00488 MutS domain V CUB89_04530 PF05192 MutS domain III CUB89_04530 PF05190 MutS family domain IV CUB89_04545 PF11412 Disulphide bond corrector protein DsbC CUB89_04545 PF02683 Cytochrome C biogenesis protein transmembrane region CUB89_04575 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CUB89_04575 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CUB89_04585 PF12704 MacB-like periplasmic core domain CUB89_04585 PF02687 FtsX-like permease family CUB89_04585 PF00005 ABC transporter CUB89_04605 PF00005 ABC transporter CUB89_04605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUB89_04610 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CUB89_04610 PF01926 50S ribosome-binding GTPase CUB89_04615 PF03739 Lipopolysaccharide export system permease LptF/LptG CUB89_04630 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CUB89_04630 PF02779 Transketolase, pyrimidine binding domain CUB89_04630 PF02780 Transketolase, C-terminal domain CUB89_04635 PF02609 Exonuclease VII small subunit CUB89_04645 PF00072 Response regulator receiver domain CUB89_04645 PF00158 Sigma-54 interaction domain CUB89_04645 PF02954 Bacterial regulatory protein, Fis family CUB89_04650 PF00512 His Kinase A (phospho-acceptor) domain CUB89_04650 PF00989 PAS fold CUB89_04650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUB89_04660 PF01676 Metalloenzyme superfamily CUB89_04660 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CUB89_04665 PF00164 Ribosomal protein S12/S23 CUB89_04670 PF00177 Ribosomal protein S7p/S5e CUB89_04675 PF14492 Elongation Factor G, domain II CUB89_04675 PF03764 Elongation factor G, domain IV CUB89_04675 PF00009 Elongation factor Tu GTP binding domain CUB89_04675 PF03144 Elongation factor Tu domain 2 CUB89_04675 PF00679 Elongation factor G C-terminus CUB89_04680 PF00338 Ribosomal protein S10p/S20e CUB89_04685 PF00297 Ribosomal protein L3 CUB89_04690 PF00573 Ribosomal protein L4/L1 family CUB89_04695 PF00276 Ribosomal protein L23 CUB89_04700 PF00181 Ribosomal Proteins L2, RNA binding domain CUB89_04700 PF03947 Ribosomal Proteins L2, C-terminal domain CUB89_04705 PF00203 Ribosomal protein S19 CUB89_04715 PF00237 Ribosomal protein L22p/L17e CUB89_04720 PF00189 Ribosomal protein S3, C-terminal domain CUB89_04720 PF07650 KH domain CUB89_04725 PF00252 Ribosomal protein L16p/L10e CUB89_04730 PF00831 Ribosomal L29 protein CUB89_04735 PF00366 Ribosomal protein S17 CUB89_04740 PF00238 Ribosomal protein L14p/L23e CUB89_04760 PF00133 tRNA synthetases class I (I, L, M and V) CUB89_04760 PF08264 Anticodon-binding domain of tRNA CUB89_04760 PF10458 Valyl tRNA synthetase tRNA binding arm CUB89_04765 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CUB89_04765 PF16355 Domain of unknown function (DUF4982) CUB89_04765 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CUB89_04765 PF02837 Glycosyl hydrolases family 2, sugar binding domain CUB89_04765 PF00703 Glycosyl hydrolases family 2 CUB89_04785 PF01618 MotA/TolQ/ExbB proton channel family CUB89_04820 PF00216 Bacterial DNA-binding protein CUB89_04825 PF11858 Domain of unknown function (DUF3378) CUB89_04825 PF01351 Ribonuclease HII CUB89_04830 PF03330 Lytic transglycolase CUB89_04830 PF05036 Sporulation related domain CUB89_04840 PF02390 Putative methyltransferase CUB89_04845 PF01702 Queuine tRNA-ribosyltransferase CUB89_04850 PF02699 Preprotein translocase subunit CUB89_04860 PF02899 Phage integrase, N-terminal SAM-like domain CUB89_04860 PF00589 Phage integrase family CUB89_04875 PF00886 Ribosomal protein S16 CUB89_04880 PF01202 Shikimate kinase CUB89_04885 PF03481 Putative GTP-binding controlling metal-binding CUB89_04885 PF01300 Telomere recombination CUB89_04890 PF01230 HIT domain CUB89_04900 PF01783 Ribosomal L32p protein family CUB89_04905 PF02504 Fatty acid synthesis protein CUB89_04910 PF01966 HD domain CUB89_04910 PF07698 7TM receptor with intracellular HD hydrolase CUB89_04910 PF07697 7TM-HD extracellular CUB89_04915 PF07883 Cupin domain CUB89_04915 PF02130 Uncharacterized protein family UPF0054 CUB89_04930 PF00589 Phage integrase family CUB89_04930 PF02899 Phage integrase, N-terminal SAM-like domain CUB89_04945 PF00565 Staphylococcal nuclease homologue CUB89_04955 PF06114 IrrE N-terminal-like domain CUB89_05035 PF03796 DnaB-like helicase C terminal domain CUB89_05035 PF00772 DnaB-like helicase N terminal domain CUB89_05200 PF00578 AhpC/TSA family CUB89_05235 PF00701 Dihydrodipicolinate synthetase family CUB89_05240 PF05173 Dihydrodipicolinate reductase, C-terminus CUB89_05240 PF01113 Dihydrodipicolinate reductase, N-terminus CUB89_05245 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CUB89_05250 PF02548 Ketopantoate hydroxymethyltransferase CUB89_05295 PF00575 S1 RNA binding domain CUB89_05305 PF00472 RF-1 domain CUB89_05305 PF03462 PCRF domain CUB89_05310 PF01746 tRNA (Guanine-1)-methyltransferase CUB89_05320 PF00849 RNA pseudouridylate synthase CUB89_05320 PF01479 S4 domain CUB89_05330 PF02416 mttA/Hcf106 family CUB89_05340 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CUB89_05340 PF00753 Metallo-beta-lactamase superfamily CUB89_05340 PF10996 Beta-Casp domain CUB89_05345 PF03960 ArsC family CUB89_05350 PF00027 Cyclic nucleotide-binding domain CUB89_05350 PF00520 Ion transport protein CUB89_05355 PF00343 Carbohydrate phosphorylase CUB89_05355 PF11897 Protein of unknown function (DUF3417) CUB89_05360 PF00107 Zinc-binding dehydrogenase CUB89_05360 PF08240 Alcohol dehydrogenase GroES-like domain CUB89_05365 PF01327 Polypeptide deformylase CUB89_05430 PF08543 Phosphomethylpyrimidine kinase CUB89_05445 PF00939 Sodium:sulfate symporter transmembrane region CUB89_05450 PF00873 AcrB/AcrD/AcrF family CUB89_05455 PF00529 HlyD membrane-fusion protein of T1SS CUB89_05455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUB89_05460 PF00689 Cation transporting ATPase, C-terminus CUB89_05460 PF00690 Cation transporter/ATPase, N-terminus CUB89_05480 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CUB89_05480 PF00205 Thiamine pyrophosphate enzyme, central domain CUB89_05480 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUB89_05485 PF02637 GatB domain CUB89_05485 PF02934 GatB/GatE catalytic domain CUB89_05495 PF00365 Phosphofructokinase CUB89_05500 PF16363 GDP-mannose 4,6 dehydratase CUB89_05505 PF00483 Nucleotidyl transferase CUB89_05520 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CUB89_05520 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CUB89_05525 PF03099 Biotin/lipoate A/B protein ligase family CUB89_05525 PF08279 HTH domain CUB89_05525 PF02237 Biotin protein ligase C terminal domain CUB89_05530 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CUB89_05535 PF02785 Biotin carboxylase C-terminal domain CUB89_05535 PF00289 Biotin carboxylase, N-terminal domain CUB89_05535 PF00682 HMGL-like CUB89_05535 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUB89_05535 PF00364 Biotin-requiring enzyme CUB89_05535 PF02436 Conserved carboxylase domain CUB89_05545 PF01039 Carboxyl transferase domain CUB89_05560 PF01245 Ribosomal protein L19 CUB89_05570 PF08308 PEGA domain CUB89_05570 PF00069 Protein kinase domain CUB89_05580 PF00266 Aminotransferase class-V CUB89_05595 PF01252 Signal peptidase (SPase) II CUB89_05600 PF08264 Anticodon-binding domain of tRNA CUB89_05600 PF00133 tRNA synthetases class I (I, L, M and V) CUB89_05605 PF07859 alpha/beta hydrolase fold CUB89_05605 PF13472 GDSL-like Lipase/Acylhydrolase family CUB89_05610 PF04389 Peptidase family M28 CUB89_05650 PF03527 RHS protein CUB89_05660 PF03527 RHS protein CUB89_05680 PF02687 FtsX-like permease family CUB89_05680 PF12704 MacB-like periplasmic core domain CUB89_05680 PF02687 FtsX-like permease family CUB89_05680 PF12704 MacB-like periplasmic core domain CUB89_05690 PF00132 Bacterial transferase hexapeptide (six repeats) CUB89_05690 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CUB89_05695 PF13419 Haloacid dehalogenase-like hydrolase CUB89_05700 PF02646 RmuC family CUB89_05705 PF17092 Penicillin-binding protein OB-like domain CUB89_05705 PF00905 Penicillin binding protein transpeptidase domain CUB89_05705 PF00912 Transglycosylase CUB89_05710 PF13180 PDZ domain CUB89_05745 PF00474 Sodium:solute symporter family CUB89_05750 PF06418 CTP synthase N-terminus CUB89_05750 PF00117 Glutamine amidotransferase class-I CUB89_05755 PF02348 Cytidylyltransferase CUB89_05770 PF00639 PPIC-type PPIASE domain CUB89_05770 PF09312 SurA N-terminal domain CUB89_05775 PF00437 Type II/IV secretion system protein CUB89_05780 PF00437 Type II/IV secretion system protein CUB89_05800 PF02470 MlaD protein CUB89_05805 PF00005 ABC transporter CUB89_05810 PF02405 Permease MlaE CUB89_05820 PF00005 ABC transporter CUB89_05820 PF00664 ABC transporter transmembrane region CUB89_05825 PF00664 ABC transporter transmembrane region CUB89_05825 PF00005 ABC transporter CUB89_05830 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CUB89_05830 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CUB89_05830 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CUB89_05830 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CUB89_05840 PF02491 SHS2 domain inserted in FTSA CUB89_05845 PF00091 Tubulin/FtsZ family, GTPase domain CUB89_05845 PF12327 FtsZ family, C-terminal domain CUB89_05870 PF16653 Saccharopine dehydrogenase C-terminal domain CUB89_05870 PF03435 Saccharopine dehydrogenase NADP binding domain CUB89_05880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUB89_05885 PF00528 Binding-protein-dependent transport system inner membrane component CUB89_05890 PF00528 Binding-protein-dependent transport system inner membrane component CUB89_05890 PF12911 N-terminal TM domain of oligopeptide transport permease C CUB89_05905 PF00579 tRNA synthetases class I (W and Y) CUB89_05905 PF01479 S4 domain CUB89_05910 PF13593 SBF-like CPA transporter family (DUF4137) CUB89_05940 PF02195 ParB-like nuclease domain CUB89_05940 PF17762 HTH domain found in ParB protein CUB89_05975 PF00521 DNA gyrase/topoisomerase IV, subunit A CUB89_06000 PF07670 Nucleoside recognition CUB89_06000 PF17910 FeoB cytosolic helical domain CUB89_06000 PF04023 FeoA domain CUB89_06000 PF02421 Ferrous iron transport protein B CUB89_06000 PF07664 Ferrous iron transport protein B C terminus CUB89_06010 PF00884 Sulfatase CUB89_06010 PF16385 Domain of unknown function CUB89_06015 PF01594 AI-2E family transporter CUB89_06020 PF02163 Peptidase family M50 CUB89_06020 PF17820 PDZ domain CUB89_06030 PF04371 Porphyromonas-type peptidyl-arginine deiminase CUB89_06045 PF00731 AIR carboxylase CUB89_06050 PF00156 Phosphoribosyl transferase domain CUB89_06055 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CUB89_06055 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CUB89_06060 PF01979 Amidohydrolase family CUB89_06065 PF18389 TrmO C-terminal domain CUB89_06065 PF01980 tRNA-methyltransferase O CUB89_06075 PF00529 HlyD membrane-fusion protein of T1SS CUB89_06075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUB89_06080 PF00873 AcrB/AcrD/AcrF family CUB89_06090 PF02321 Outer membrane efflux protein CUB89_06095 PF00005 ABC transporter CUB89_06095 PF02687 FtsX-like permease family CUB89_06095 PF12704 MacB-like periplasmic core domain CUB89_06100 PF02687 FtsX-like permease family CUB89_06100 PF12704 MacB-like periplasmic core domain CUB89_06100 PF00005 ABC transporter CUB89_06105 PF00529 HlyD membrane-fusion protein of T1SS CUB89_06105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUB89_06110 PF00293 NUDIX domain CUB89_06120 PF01189 16S rRNA methyltransferase RsmB/F CUB89_06120 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CUB89_06120 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CUB89_06125 PF00480 ROK family CUB89_06130 PF01258 Prokaryotic dksA/traR C4-type zinc finger CUB89_06135 PF00471 Ribosomal protein L33 CUB89_06140 PF01084 Ribosomal protein S18 CUB89_06145 PF02649 Type I GTP cyclohydrolase folE2 CUB89_06155 PF01488 Shikimate / quinate 5-dehydrogenase CUB89_06155 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CUB89_06160 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CUB89_06160 PF03900 Porphobilinogen deaminase, C-terminal domain CUB89_06170 PF04343 Protein of unknown function, DUF488 CUB89_06185 PF01119 DNA mismatch repair protein, C-terminal domain CUB89_06185 PF08676 MutL C terminal dimerisation domain CUB89_06225 PF03793 PASTA domain CUB89_06225 PF00069 Protein kinase domain CUB89_06230 PF13614 AAA domain CUB89_06235 PF00069 Protein kinase domain CUB89_06240 PF00155 Aminotransferase class I and II CUB89_06245 PF09297 NADH pyrophosphatase zinc ribbon domain CUB89_06245 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CUB89_06245 PF00293 NUDIX domain CUB89_06250 PF00294 pfkB family carbohydrate kinase CUB89_06270 PF00271 Helicase conserved C-terminal domain CUB89_06270 PF00176 SNF2 family N-terminal domain CUB89_06320 PF00899 ThiF family CUB89_06325 PF13277 YmdB-like protein CUB89_06335 PF00579 tRNA synthetases class I (W and Y) CUB89_06345 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CUB89_06345 PF02542 YgbB family CUB89_06360 PF08502 LeuA allosteric (dimerisation) domain CUB89_06360 PF00682 HMGL-like CUB89_06365 PF01557 Fumarylacetoacetate (FAA) hydrolase family CUB89_06370 PF00581 Rhodanese-like domain CUB89_06400 PF02861 Clp amino terminal domain, pathogenicity island component CUB89_06400 PF07724 AAA domain (Cdc48 subfamily) CUB89_06400 PF10431 C-terminal, D2-small domain, of ClpB protein CUB89_06400 PF17871 AAA lid domain CUB89_06400 PF00004 ATPase family associated with various cellular activities (AAA) CUB89_06405 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain CUB89_06410 PF02151 UvrB/uvrC motif CUB89_06415 PF00950 ABC 3 transport family CUB89_06420 PF00005 ABC transporter CUB89_06435 PF07555 beta-N-acetylglucosaminidase CUB89_06435 PF02838 Glycosyl hydrolase family 20, domain 2 CUB89_06445 PF01368 DHH family CUB89_06445 PF02272 DHHA1 domain CUB89_06445 PF17768 RecJ OB domain CUB89_06450 PF00682 HMGL-like CUB89_06450 PF08502 LeuA allosteric (dimerisation) domain CUB89_06490 PF01554 MatE CUB89_06495 PF01209 ubiE/COQ5 methyltransferase family CUB89_06515 PF01678 Diaminopimelate epimerase CUB89_06520 PF00271 Helicase conserved C-terminal domain CUB89_06520 PF18074 Primosomal protein N C-terminal domain CUB89_06520 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CUB89_06520 PF04851 Type III restriction enzyme, res subunit CUB89_06520 PF17764 3′ DNA-binding domain (3′BD) CUB89_06525 PF17827 PrmC N-terminal domain CUB89_06525 PF05175 Methyltransferase small domain CUB89_06530 PF00472 RF-1 domain CUB89_06530 PF03462 PCRF domain CUB89_06540 PF01235 Sodium:alanine symporter family CUB89_06555 PF04960 Glutaminase CUB89_06560 PF13520 Amino acid permease CUB89_06605 PF03129 Anticodon binding domain CUB89_06605 PF09180 Prolyl-tRNA synthetase, C-terminal CUB89_06605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUB89_06625 PF01636 Phosphotransferase enzyme family CUB89_06630 PF01370 NAD dependent epimerase/dehydratase family CUB89_06640 PF00004 ATPase family associated with various cellular activities (AAA) CUB89_06640 PF16193 AAA C-terminal domain CUB89_06640 PF12002 MgsA AAA+ ATPase C terminal CUB89_06655 PF02659 Putative manganese efflux pump CUB89_06660 PF02567 Phenazine biosynthesis-like protein CUB89_06670 PF04552 Sigma-54, DNA binding domain CUB89_06670 PF04963 Sigma-54 factor, core binding domain CUB89_06670 PF00309 Sigma-54 factor, Activator interacting domain (AID) CUB89_06675 PF07690 Major Facilitator Superfamily CUB89_06690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CUB89_06720 PF00176 SNF2 family N-terminal domain CUB89_06720 PF00271 Helicase conserved C-terminal domain CUB89_06725 PF01066 CDP-alcohol phosphatidyltransferase CUB89_06730 PF00533 BRCA1 C Terminus (BRCT) domain CUB89_06730 PF03120 NAD-dependent DNA ligase OB-fold domain CUB89_06730 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CUB89_06730 PF01653 NAD-dependent DNA ligase adenylation domain CUB89_06740 PF01817 Chorismate mutase type II CUB89_06740 PF00800 Prephenate dehydratase CUB89_06740 PF01842 ACT domain CUB89_06750 PF00849 RNA pseudouridylate synthase CUB89_06755 PF01784 NIF3 (NGG1p interacting factor 3) CUB89_06775 PF00005 ABC transporter CUB89_06780 PF08299 Bacterial dnaA protein helix-turn-helix CUB89_06780 PF00308 Bacterial dnaA protein CUB89_06780 PF11638 DnaA N-terminal domain CUB89_06785 PF00293 NUDIX domain CUB89_06795 PF00696 Amino acid kinase family CUB89_06795 PF00583 Acetyltransferase (GNAT) family CUB89_06800 PF07517 SecA DEAD-like domain CUB89_06800 PF01043 SecA preprotein cross-linking domain CUB89_06800 PF02810 SEC-C motif CUB89_06800 PF07516 SecA Wing and Scaffold domain CUB89_06805 PF17755 UvrA DNA-binding domain CUB89_06805 PF17760 UvrA interaction domain CUB89_06805 PF00005 ABC transporter CUB89_06840 PF00750 tRNA synthetases class I (R) CUB89_06840 PF03485 Arginyl tRNA synthetase N terminal domain CUB89_06840 PF05746 DALR anticodon binding domain CUB89_06850 PF01432 Peptidase family M3 CUB89_06880 PF00501 AMP-binding enzyme CUB89_06880 PF13193 AMP-binding enzyme C-terminal domain CUB89_06895 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CUB89_06900 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CUB89_06915 PF02978 Signal peptide binding domain CUB89_06915 PF00448 SRP54-type protein, GTPase domain CUB89_06915 PF02881 SRP54-type protein, helical bundle domain CUB89_06920 PF02838 Glycosyl hydrolase family 20, domain 2 CUB89_06920 PF00728 Glycosyl hydrolase family 20, catalytic domain CUB89_06920 PF07691 PA14 domain CUB89_06940 PF05681 Fumarate hydratase (Fumerase) CUB89_06940 PF05683 Fumarase C-terminus CUB89_06950 PF02355 Protein export membrane protein CUB89_06950 PF07549 SecD/SecF GG Motif CUB89_06970 PF00155 Aminotransferase class I and II CUB89_06975 PF00881 Nitroreductase family CUB89_07005 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CUB89_07010 PF01750 Hydrogenase maturation protease CUB89_07020 PF00374 Nickel-dependent hydrogenase CUB89_07025 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CUB89_07025 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CUB89_07045 PF00709 Adenylosuccinate synthetase CUB89_07060 PF00912 Transglycosylase CUB89_07060 PF00905 Penicillin binding protein transpeptidase domain CUB89_07065 PF01195 Peptidyl-tRNA hydrolase CUB89_07075 PF17863 AAA lid domain CUB89_07075 PF07726 ATPase family associated with various cellular activities (AAA) CUB89_07080 PF00795 Carbon-nitrogen hydrolase CUB89_07090 PF00107 Zinc-binding dehydrogenase CUB89_07090 PF08240 Alcohol dehydrogenase GroES-like domain CUB89_07095 PF02403 Seryl-tRNA synthetase N-terminal domain CUB89_07095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUB89_07130 PF06969 HemN C-terminal domain CUB89_07130 PF04055 Radical SAM superfamily CUB89_07150 PF00933 Glycosyl hydrolase family 3 N terminal domain CUB89_07160 PF00722 Glycosyl hydrolases family 16 CUB89_07170 PF00390 Malic enzyme, N-terminal domain CUB89_07170 PF03949 Malic enzyme, NAD binding domain CUB89_07170 PF01515 Phosphate acetyl/butaryl transferase CUB89_07175 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUB89_07180 PF09334 tRNA synthetases class I (M) CUB89_07180 PF01588 Putative tRNA binding domain CUB89_07180 PF08264 Anticodon-binding domain of tRNA CUB89_07185 PF00155 Aminotransferase class I and II CUB89_07190 PF05025 RbsD / FucU transport protein family CUB89_07195 PF01636 Phosphotransferase enzyme family CUB89_07210 PF01757 Acyltransferase family CUB89_07225 PF00132 Bacterial transferase hexapeptide (six repeats) CUB89_07230 PF00535 Glycosyl transferase family 2 CUB89_07255 PF00534 Glycosyl transferases group 1 CUB89_07255 PF13439 Glycosyltransferase Family 4 CUB89_07260 PF13439 Glycosyltransferase Family 4 CUB89_07275 PF00535 Glycosyl transferase family 2 CUB89_07280 PF01501 Glycosyl transferase family 8 CUB89_07280 PF08759 Glycosyltransferase GT-D fold CUB89_07285 PF00535 Glycosyl transferase family 2 CUB89_07290 PF01943 Polysaccharide biosynthesis protein CUB89_07295 PF00535 Glycosyl transferase family 2 CUB89_07300 PF02397 Bacterial sugar transferase CUB89_07310 PF13614 AAA domain CUB89_07315 PF10531 SLBB domain CUB89_07315 PF02563 Polysaccharide biosynthesis/export protein CUB89_07330 PF09397 Ftsk gamma domain CUB89_07330 PF17854 FtsK alpha domain CUB89_07330 PF01580 FtsK/SpoIIIE family CUB89_07340 PF13302 Acetyltransferase (GNAT) domain CUB89_07345 PF02915 Rubrerythrin CUB89_07350 PF01578 Cytochrome C assembly protein CUB89_07365 PF00199 Catalase CUB89_07365 PF06628 Catalase-related immune-responsive CUB89_07365 PF18011 C-terminal domain found in long catalases CUB89_07385 PF00171 Aldehyde dehydrogenase family CUB89_07460 PF09335 SNARE associated Golgi protein CUB89_07465 PF02684 Lipid-A-disaccharide synthetase CUB89_07475 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CUB89_07475 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CUB89_07490 PF00654 Voltage gated chloride channel CUB89_07530 PF02321 Outer membrane efflux protein CUB89_07535 PF00873 AcrB/AcrD/AcrF family CUB89_07540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUB89_07545 PF01432 Peptidase family M3 CUB89_07550 PF00682 HMGL-like CUB89_07550 PF08502 LeuA allosteric (dimerisation) domain CUB89_07565 PF01883 Iron-sulfur cluster assembly protein CUB89_07565 PF10609 NUBPL iron-transfer P-loop NTPase CUB89_07570 PF01554 MatE CUB89_07575 PF04851 Type III restriction enzyme, res subunit CUB89_07580 PF07669 Eco57I restriction-modification methylase CUB89_07595 PF00682 HMGL-like CUB89_07595 PF00364 Biotin-requiring enzyme CUB89_07595 PF02436 Conserved carboxylase domain CUB89_07600 PF13396 Phospholipase_D-nuclease N-terminal CUB89_07600 PF13091 PLD-like domain CUB89_07605 PF00303 Thymidylate synthase CUB89_07610 PF00186 Dihydrofolate reductase CUB89_07615 PF00873 AcrB/AcrD/AcrF family CUB89_07620 PF13533 Biotin-lipoyl like CUB89_07635 PF04909 Amidohydrolase CUB89_07640 PF00753 Metallo-beta-lactamase superfamily CUB89_07645 PF00270 DEAD/DEAH box helicase CUB89_07645 PF00271 Helicase conserved C-terminal domain CUB89_07650 PF02075 Crossover junction endodeoxyribonuclease RuvC CUB89_07665 PF00293 NUDIX domain CUB89_07675 PF00728 Glycosyl hydrolase family 20, catalytic domain CUB89_07675 PF02838 Glycosyl hydrolase family 20, domain 2 CUB89_07680 PF02838 Glycosyl hydrolase family 20, domain 2 CUB89_07680 PF00728 Glycosyl hydrolase family 20, catalytic domain CUB89_07695 PF02110 Hydroxyethylthiazole kinase family CUB89_07700 PF02581 Thiamine monophosphate synthase CUB89_07705 PF00291 Pyridoxal-phosphate dependent enzyme CUB89_07710 PF01053 Cys/Met metabolism PLP-dependent enzyme CUB89_07715 PF02082 Transcriptional regulator CUB89_07720 PF00842 Alanine racemase, C-terminal domain CUB89_07720 PF01168 Alanine racemase, N-terminal domain CUB89_07735 PF09827 CRISPR associated protein Cas2 CUB89_07760 PF07885 Ion channel CUB89_07765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUB89_07765 PF00183 Hsp90 protein CUB89_07780 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CUB89_07780 PF01409 tRNA synthetases class II core domain (F) CUB89_07800 PF01212 Beta-eliminating lyase CUB89_07820 PF03352 Methyladenine glycosylase CUB89_07825 PF14748 Pyrroline-5-carboxylate reductase dimerisation CUB89_07825 PF03807 NADP oxidoreductase coenzyme F420-dependent CUB89_07855 PF01642 Methylmalonyl-CoA mutase CUB89_07860 PF02310 B12 binding domain CUB89_07860 PF01642 Methylmalonyl-CoA mutase CUB89_07870 PF10672 S-adenosylmethionine-dependent methyltransferase CUB89_07870 PF17785 PUA-like domain CUB89_07880 PF00342 Phosphoglucose isomerase CUB89_07890 PF00391 PEP-utilising enzyme, mobile domain CUB89_07890 PF02896 PEP-utilising enzyme, TIM barrel domain CUB89_07890 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CUB89_07900 PF14815 NUDIX domain CUB89_07900 PF00730 HhH-GPD superfamily base excision DNA repair protein CUB89_07900 PF00633 Helix-hairpin-helix motif CUB89_07905 PF08501 Shikimate dehydrogenase substrate binding domain CUB89_07905 PF01488 Shikimate / quinate 5-dehydrogenase CUB89_07905 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CUB89_07910 PF08471 Class II vitamin B12-dependent ribonucleotide reductase CUB89_07910 PF02867 Ribonucleotide reductase, barrel domain CUB89_07920 PF09529 Integral membrane protein (intg_mem_TP0381) CUB89_07930 PF01842 ACT domain CUB89_07930 PF13840 ACT domain CUB89_07930 PF00696 Amino acid kinase family CUB89_07935 PF03447 Homoserine dehydrogenase, NAD binding domain CUB89_07935 PF01842 ACT domain CUB89_07935 PF00742 Homoserine dehydrogenase CUB89_07945 PF18766 SWI2/SNF2 ATPase CUB89_07945 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CUB89_07945 PF11867 Domain of unknown function (DUF3387) CUB89_07950 PF01420 Type I restriction modification DNA specificity domain CUB89_07955 PF00589 Phage integrase family CUB89_07955 PF02899 Phage integrase, N-terminal SAM-like domain CUB89_07960 PF02661 Fic/DOC family CUB89_07960 PF13784 Fic/DOC family N-terminal CUB89_07965 PF01420 Type I restriction modification DNA specificity domain CUB89_07975 PF02384 N-6 DNA Methylase CUB89_07980 PF06738 Putative threonine/serine exporter CUB89_07980 PF12821 Threonine/Serine exporter, ThrE CUB89_07985 PF06738 Putative threonine/serine exporter CUB89_07990 PF02607 B12 binding domain CUB89_07990 PF02310 B12 binding domain CUB89_07990 PF02574 Homocysteine S-methyltransferase CUB89_07990 PF02965 Vitamin B12 dependent methionine synthase, activation domain CUB89_07990 PF00809 Pterin binding enzyme CUB89_08030 PF04073 Aminoacyl-tRNA editing domain CUB89_08035 PF02540 NAD synthase CUB89_08035 PF00958 GMP synthase C terminal domain CUB89_08035 PF00117 Glutamine amidotransferase class-I CUB89_08050 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUB89_08050 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CUB89_08055 PF00117 Glutamine amidotransferase class-I CUB89_08060 PF00425 chorismate binding enzyme CUB89_08075 PF00701 Dihydrodipicolinate synthetase family CUB89_08095 PF01546 Peptidase family M20/M25/M40 CUB89_08095 PF07687 Peptidase dimerisation domain CUB89_08100 PF00206 Lyase CUB89_08100 PF10397 Adenylosuccinate lyase C-terminus CUB89_08115 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CUB89_08115 PF00476 DNA polymerase family A CUB89_08115 PF01612 3'-5' exonuclease CUB89_08115 PF01367 5'-3' exonuclease, C-terminal SAM fold CUB89_08150 PF01032 FecCD transport family CUB89_08155 PF01032 FecCD transport family CUB89_08160 PF00005 ABC transporter CUB89_08165 PF01497 Periplasmic binding protein CUB89_08175 PF01578 Cytochrome C assembly protein CUB89_08190 PF02838 Glycosyl hydrolase family 20, domain 2 CUB89_08190 PF00728 Glycosyl hydrolase family 20, catalytic domain CUB89_08190 PF03173 Putative carbohydrate binding domain CUB89_08205 PF00795 Carbon-nitrogen hydrolase CUB89_08215 PF00483 Nucleotidyl transferase CUB89_08220 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CUB89_08220 PF07977 FabA-like domain CUB89_08235 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CUB89_08240 PF00465 Iron-containing alcohol dehydrogenase CUB89_08260 PF00589 Phage integrase family CUB89_08260 PF02899 Phage integrase, N-terminal SAM-like domain CUB89_08265 PF02086 D12 class N6 adenine-specific DNA methyltransferase CUB89_08285 PF00149 Calcineurin-like phosphoesterase CUB89_08295 PF00667 FAD binding domain CUB89_08295 PF00258 Flavodoxin CUB89_08295 PF00175 Oxidoreductase NAD-binding domain CUB89_08310 PF00216 Bacterial DNA-binding protein CUB89_08315 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CUB89_08325 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CUB89_08345 PF02673 Bacitracin resistance protein BacA CUB89_08350 PF00902 Sec-independent protein translocase protein (TatC) CUB89_08355 PF00749 tRNA synthetases class I (E and Q), catalytic domain CUB89_08360 PF00924 Mechanosensitive ion channel CUB89_08365 PF14489 QueF-like protein CUB89_08370 PF06508 Queuosine biosynthesis protein QueC CUB89_08375 PF02223 Thymidylate kinase CUB89_08380 PF00753 Metallo-beta-lactamase superfamily CUB89_08380 PF10996 Beta-Casp domain CUB89_08380 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CUB89_08395 PF00180 Isocitrate/isopropylmalate dehydrogenase CUB89_08400 PF01757 Acyltransferase family CUB89_08410 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CUB89_08435 PF01055 Glycosyl hydrolases family 31 CUB89_08435 PF17137 Domain of unknown function (DUF5110) CUB89_08435 PF16338 Domain of unknown function (DUF4968) CUB89_08435 PF13802 Galactose mutarotase-like CUB89_08440 PF13439 Glycosyltransferase Family 4 CUB89_08440 PF00534 Glycosyl transferases group 1 CUB89_08450 PF01327 Polypeptide deformylase CUB89_08460 PF01618 MotA/TolQ/ExbB proton channel family CUB89_08470 PF00436 Single-strand binding protein family CUB89_08475 PF02843 Phosphoribosylglycinamide synthetase, C domain CUB89_08475 PF02844 Phosphoribosylglycinamide synthetase, N domain CUB89_08475 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CUB89_08480 PF06940 Domain of unknown function (DUF1287) CUB89_08485 PF01268 Formate--tetrahydrofolate ligase CUB89_08490 PF08546 Ketopantoate reductase PanE/ApbA C terminal CUB89_08490 PF02558 Ketopantoate reductase PanE/ApbA CUB89_08505 PF00528 Binding-protein-dependent transport system inner membrane component CUB89_08510 PF12911 N-terminal TM domain of oligopeptide transport permease C CUB89_08510 PF00528 Binding-protein-dependent transport system inner membrane component CUB89_08515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUB89_08520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUB89_08520 PF00005 ABC transporter CUB89_08525 PF00005 ABC transporter CUB89_08525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUB89_08530 PF00842 Alanine racemase, C-terminal domain CUB89_08530 PF01168 Alanine racemase, N-terminal domain CUB89_08540 PF00892 EamA-like transporter family CUB89_08545 PF13286 Phosphohydrolase-associated domain CUB89_08545 PF01966 HD domain CUB89_08550 PF13180 PDZ domain CUB89_08550 PF17820 PDZ domain CUB89_08570 PF01964 Radical SAM ThiC family CUB89_08570 PF13667 ThiC-associated domain CUB89_08575 PF00403 Heavy-metal-associated domain CUB89_08580 PF02583 Metal-sensitive transcriptional repressor CUB89_08590 PF04542 Sigma-70 region 2 CUB89_08590 PF08281 Sigma-70, region 4 CUB89_08595 PF13859 BNR repeat-like domain CUB89_08595 PF14873 N-terminal domain of BNR-repeat neuraminidase CUB89_08605 PF07690 Major Facilitator Superfamily CUB89_08610 PF02952 L-fucose isomerase, C-terminal domain CUB89_08610 PF07881 L-fucose isomerase, first N-terminal domain CUB89_08610 PF07882 L-fucose isomerase, second N-terminal domain CUB89_08620 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CUB89_08620 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CUB89_08655 PF01479 S4 domain CUB89_08655 PF01728 FtsJ-like methyltransferase CUB89_08670 PF02585 GlcNAc-PI de-N-acetylase CUB89_08670 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CUB89_08675 PF10672 S-adenosylmethionine-dependent methyltransferase CUB89_08675 PF17785 PUA-like domain CUB89_08695 PF17785 PUA-like domain CUB89_08695 PF10672 S-adenosylmethionine-dependent methyltransferase CUB89_08700 PF04321 RmlD substrate binding domain CUB89_08715 PF02838 Glycosyl hydrolase family 20, domain 2 CUB89_08715 PF00728 Glycosyl hydrolase family 20, catalytic domain CUB89_08725 PF01554 MatE CUB89_08735 PF09154 Domain of unknown function (DUF1939) CUB89_08735 PF00128 Alpha amylase, catalytic domain CUB89_08745 PF13411 MerR HTH family regulatory protein CUB89_08765 PF00149 Calcineurin-like phosphoesterase CUB89_08770 PF00248 Aldo/keto reductase family CUB89_08775 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CUB89_08780 PF00248 Aldo/keto reductase family CUB89_08790 PF00155 Aminotransferase class I and II CUB89_08810 PF01757 Acyltransferase family CUB89_08820 PF13180 PDZ domain CUB89_08825 PF13180 PDZ domain CUB89_08865 PF02686 Glu-tRNAGln amidotransferase C subunit CUB89_08870 PF01425 Amidase CUB89_08875 PF17863 AAA lid domain CUB89_08875 PF07726 ATPase family associated with various cellular activities (AAA) CUB89_08890 PF13519 von Willebrand factor type A domain CUB89_08915 PF00248 Aldo/keto reductase family CUB89_08920 PF03129 Anticodon binding domain CUB89_08920 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUB89_08935 PF00155 Aminotransferase class I and II CUB89_08940 PF01037 Lrp/AsnC ligand binding domain CUB89_08955 PF07728 AAA domain (dynein-related subfamily) CUB89_08955 PF12102 Domain of unknown function (DUF3578) CUB89_08955 PF07728 AAA domain (dynein-related subfamily) CUB89_08955 PF12102 Domain of unknown function (DUF3578) CUB89_08970 PF00535 Glycosyl transferase family 2 CUB89_08985 PF01168 Alanine racemase, N-terminal domain CUB89_09000 PF00005 ABC transporter CUB89_09005 PF07687 Peptidase dimerisation domain CUB89_09005 PF01546 Peptidase family M20/M25/M40 CUB89_09010 PF02603 HPr Serine kinase N terminus CUB89_09010 PF07475 HPr Serine kinase C-terminal domain CUB89_09015 PF00381 PTS HPr component phosphorylation site CUB89_09020 PF02896 PEP-utilising enzyme, TIM barrel domain CUB89_09020 PF05524 PEP-utilising enzyme, N-terminal CUB89_09020 PF00391 PEP-utilising enzyme, mobile domain CUB89_09025 PF00884 Sulfatase CUB89_09030 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CUB89_09030 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CUB89_09035 PF02657 Fe-S metabolism associated domain CUB89_09045 PF02806 Alpha amylase, C-terminal all-beta domain CUB89_09045 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CUB89_09045 PF00128 Alpha amylase, catalytic domain CUB89_09050 PF04991 LicD family CUB89_09065 PF01467 Cytidylyltransferase-like CUB89_09070 PF04991 LicD family CUB89_09080 PF01467 Cytidylyltransferase-like CUB89_09085 PF04991 LicD family CUB89_09120 PF01467 Cytidylyltransferase-like CUB89_09130 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CUB89_09130 PF13288 DXP reductoisomerase C-terminal domain CUB89_09130 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CUB89_09135 PF04235 Protein of unknown function (DUF418) CUB89_09135 PF07786 Protein of unknown function (DUF1624) CUB89_09145 PF05198 Translation initiation factor IF-3, N-terminal domain CUB89_09145 PF00707 Translation initiation factor IF-3, C-terminal domain CUB89_09150 PF02824 TGS domain CUB89_09150 PF03129 Anticodon binding domain CUB89_09150 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUB89_09150 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CUB89_09160 PF00490 Delta-aminolevulinic acid dehydratase CUB89_09170 PF00072 Response regulator receiver domain CUB89_09170 PF00486 Transcriptional regulatory protein, C terminal CUB89_09175 PF00512 His Kinase A (phospho-acceptor) domain CUB89_09175 PF00672 HAMP domain CUB89_09175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUB89_09180 PF01370 NAD dependent epimerase/dehydratase family CUB89_09205 PF01553 Acyltransferase CUB89_09205 PF00501 AMP-binding enzyme CUB89_09210 PF02601 Exonuclease VII, large subunit CUB89_09210 PF13742 OB-fold nucleic acid binding domain CUB89_09245 PF08442 ATP-grasp domain CUB89_09245 PF00549 CoA-ligase CUB89_09250 PF02629 CoA binding domain CUB89_09250 PF00549 CoA-ligase CUB89_09265 PF00570 HRDC domain CUB89_09265 PF09382 RQC domain CUB89_09265 PF16124 RecQ zinc-binding CUB89_09265 PF00270 DEAD/DEAH box helicase CUB89_09265 PF00271 Helicase conserved C-terminal domain CUB89_09285 PF02698 DUF218 domain CUB89_09305 PF00210 Ferritin-like domain CUB89_09315 PF01047 MarR family CUB89_09320 PF00291 Pyridoxal-phosphate dependent enzyme CUB89_09335 PF01451 Low molecular weight phosphotyrosine protein phosphatase CUB89_09345 PF01654 Cytochrome bd terminal oxidase subunit I CUB89_09350 PF02322 Cytochrome bd terminal oxidase subunit II CUB89_09355 PF16870 2-oxoglutarate dehydrogenase C-terminal CUB89_09355 PF02779 Transketolase, pyrimidine binding domain CUB89_09355 PF00676 Dehydrogenase E1 component CUB89_09355 PF16078 2-oxoglutarate dehydrogenase N-terminus CUB89_09360 PF02817 e3 binding domain CUB89_09360 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CUB89_09360 PF00364 Biotin-requiring enzyme CUB89_09370 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUB89_09370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CUB89_09375 PF01979 Amidohydrolase family CUB89_09385 PF01301 Glycosyl hydrolases family 35 CUB89_09395 PF07715 TonB-dependent Receptor Plug Domain CUB89_09395 PF00593 TonB dependent receptor CUB89_09405 PF07685 CobB/CobQ-like glutamine amidotransferase domain CUB89_09405 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CUB89_09405 PF00155 Aminotransferase class I and II CUB89_09410 PF03186 CobD/Cbib protein CUB89_09415 PF02277 Phosphoribosyltransferase CUB89_09420 PF02654 Cobalamin-5-phosphate synthase CUB89_09430 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CUB89_09465 PF00365 Phosphofructokinase CUB89_09485 PF02838 Glycosyl hydrolase family 20, domain 2 CUB89_09485 PF00728 Glycosyl hydrolase family 20, catalytic domain CUB89_09485 PF07691 PA14 domain CUB89_09490 PF16193 AAA C-terminal domain CUB89_09490 PF00004 ATPase family associated with various cellular activities (AAA) CUB89_09490 PF12002 MgsA AAA+ ATPase C terminal CUB89_09495 PF00703 Glycosyl hydrolases family 2 CUB89_09495 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CUB89_09495 PF02837 Glycosyl hydrolases family 2, sugar binding domain CUB89_09500 PF00703 Glycosyl hydrolases family 2 CUB89_09500 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CUB89_09500 PF16353 Domain of unknown function(DUF4981) CUB89_09500 PF02929 Beta galactosidase small chain CUB89_09500 PF02837 Glycosyl hydrolases family 2, sugar binding domain CUB89_09515 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CUB89_09515 PF17944 Arginine decarboxylase C-terminal helical extension CUB89_09515 PF17810 Arginine decarboxylase helical bundle domain CUB89_09520 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CUB89_09530 PF00884 Sulfatase CUB89_09535 PF13603 Leucyl-tRNA synthetase, Domain 2 CUB89_09535 PF09334 tRNA synthetases class I (M) CUB89_09535 PF00133 tRNA synthetases class I (I, L, M and V) CUB89_09535 PF08264 Anticodon-binding domain of tRNA CUB89_09540 PF00834 Ribulose-phosphate 3 epimerase family CUB89_09545 PF02666 Phosphatidylserine decarboxylase CUB89_09555 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUB89_09555 PF00205 Thiamine pyrophosphate enzyme, central domain CUB89_09555 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CUB89_09560 PF13419 Haloacid dehalogenase-like hydrolase CUB89_09565 PF01649 Ribosomal protein S20 CUB89_09575 PF02401 LytB protein CUB89_09580 PF01207 Dihydrouridine synthase (Dus) CUB89_09600 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CUB89_09600 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CUB89_09615 PF00263 Bacterial type II and III secretion system protein CUB89_09615 PF03958 Bacterial type II/III secretion system short domain CUB89_09625 PF13735 tRNA nucleotidyltransferase domain 2 putative CUB89_09625 PF01743 Poly A polymerase head domain CUB89_09625 PF12627 Probable RNA and SrmB- binding site of polymerase A CUB89_09640 PF00270 DEAD/DEAH box helicase CUB89_09640 PF08482 ATP-dependent helicase C-terminal CUB89_09640 PF04408 Helicase associated domain (HA2) CUB89_09640 PF00271 Helicase conserved C-terminal domain CUB89_09655 PF17804 Tail specific protease N-terminal domain CUB89_09655 PF00595 PDZ domain CUB89_09655 PF03572 Peptidase family S41 CUB89_09655 PF11818 C-terminal domain of tail specific protease (DUF3340) CUB89_09660 PF00464 Serine hydroxymethyltransferase CUB89_09675 PF01427 D-ala-D-ala dipeptidase CUB89_09680 PF03979 Sigma-70 factor, region 1.1 CUB89_09680 PF04542 Sigma-70 region 2 CUB89_09680 PF04539 Sigma-70 region 3 CUB89_09680 PF04545 Sigma-70, region 4 CUB89_09680 PF00140 Sigma-70 factor, region 1.2 CUB89_09685 PF01807 CHC2 zinc finger CUB89_09685 PF08275 DNA primase catalytic core, N-terminal domain CUB89_09685 PF10410 DnaB-helicase binding domain of primase CUB89_09690 PF01957 NfeD-like C-terminal, partner-binding CUB89_09690 PF01972 Serine dehydrogenase proteinase CUB89_09695 PF00919 Uncharacterized protein family UPF0004 CUB89_09695 PF18693 TRAM domain CUB89_09695 PF04055 Radical SAM superfamily CUB89_09710 PF02446 4-alpha-glucanotransferase CUB89_09715 PF03797 Autotransporter beta-domain CUB89_09715 PF07548 Chlamydia polymorphic membrane protein middle domain CUB89_09715 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CUB89_09735 PF00677 Lumazine binding domain CUB89_09745 PF01522 Polysaccharide deacetylase CUB89_09765 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CUB89_09765 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CUB89_09765 PF10531 SLBB domain CUB89_09770 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CUB89_09770 PF01568 Molydopterin dinucleotide binding domain CUB89_09770 PF00384 Molybdopterin oxidoreductase CUB89_09770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CUB89_09775 PF00146 NADH dehydrogenase CUB89_09785 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CUB89_09790 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CUB89_09795 PF00361 Proton-conducting membrane transporter CUB89_09795 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CUB89_09805 PF00361 Proton-conducting membrane transporter CUB89_09810 PF00361 Proton-conducting membrane transporter CUB89_09825 PF01883 Iron-sulfur cluster assembly protein CUB89_09835 PF00854 POT family CUB89_09840 PF00348 Polyprenyl synthetase CUB89_09845 PF01969 Protein of unknown function DUF111 CUB89_09850 PF11734 TilS substrate C-terminal domain CUB89_09850 PF09179 TilS substrate binding domain CUB89_09850 PF01171 PP-loop family CUB89_09855 PF00731 AIR carboxylase CUB89_09860 PF02638 Glycosyl hydrolase-like 10 CUB89_09865 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CUB89_09865 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CUB89_09870 PF00294 pfkB family carbohydrate kinase CUB89_09870 PF01467 Cytidylyltransferase-like CUB89_09875 PF03023 Lipid II flippase MurJ CUB89_09880 PF00155 Aminotransferase class I and II CUB89_09890 PF01207 Dihydrouridine synthase (Dus) CUB89_09895 PF00437 Type II/IV secretion system protein CUB89_09900 PF00437 Type II/IV secretion system protein CUB89_09905 PF00482 Type II secretion system (T2SS), protein F CUB89_09915 PF00535 Glycosyl transferase family 2 CUB89_09920 PF00535 Glycosyl transferase family 2 CUB89_09925 PF00334 Nucleoside diphosphate kinase CUB89_09935 PF00849 RNA pseudouridylate synthase CUB89_09945 PF01668 SmpB protein CUB89_09955 PF00588 SpoU rRNA Methylase family CUB89_09960 PF00285 Citrate synthase, C-terminal domain CUB89_09985 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CUB89_09985 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CUB89_10000 PF00465 Iron-containing alcohol dehydrogenase CUB89_10005 PF07703 Alpha-2-macroglobulin bait region domain CUB89_10005 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CUB89_10005 PF01835 MG2 domain CUB89_10005 PF00207 Alpha-2-macroglobulin family CUB89_10005 PF07678 A-macroglobulin TED domain CUB89_10010 PF00892 EamA-like transporter family CUB89_10020 PF13361 UvrD-like helicase C-terminal domain CUB89_10020 PF00580 UvrD/REP helicase N-terminal domain CUB89_10020 PF12705 PD-(D/E)XK nuclease superfamily CUB89_10035 PF17820 PDZ domain CUB89_10035 PF02163 Peptidase family M50 CUB89_10040 PF00453 Ribosomal protein L20 CUB89_10045 PF01632 Ribosomal protein L35 CUB89_10050 PF12344 Ultra-violet resistance protein B CUB89_10050 PF02151 UvrB/uvrC motif CUB89_10050 PF17757 UvrB interaction domain CUB89_10050 PF00271 Helicase conserved C-terminal domain CUB89_10050 PF04851 Type III restriction enzyme, res subunit CUB89_10065 PF07690 Major Facilitator Superfamily CUB89_10070 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CUB89_10095 PF02901 Pyruvate formate lyase-like CUB89_10095 PF01228 Glycine radical CUB89_10100 PF04055 Radical SAM superfamily CUB89_10110 PF00444 Ribosomal protein L36 CUB89_10115 PF00561 alpha/beta hydrolase fold CUB89_10140 PF00290 Tryptophan synthase alpha chain CUB89_10150 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CUB89_10155 PF00218 Indole-3-glycerol phosphate synthase CUB89_10160 PF00591 Glycosyl transferase family, a/b domain CUB89_10160 PF02885 Glycosyl transferase family, helical bundle domain CUB89_10165 PF00425 chorismate binding enzyme CUB89_10165 PF04715 Anthranilate synthase component I, N terminal region CUB89_10180 PF03030 Inorganic H+ pyrophosphatase CUB89_10185 PF00248 Aldo/keto reductase family CUB89_10245 PF00691 OmpA family CUB89_10260 PF13419 Haloacid dehalogenase-like hydrolase CUB89_10270 PF00698 Acyl transferase domain CUB89_10275 PF01196 Ribosomal protein L17 CUB89_10280 PF01000 RNA polymerase Rpb3/RpoA insert domain CUB89_10280 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CUB89_10280 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CUB89_10290 PF06750 Bacterial Peptidase A24 N-terminal domain CUB89_10290 PF01478 Type IV leader peptidase family CUB89_10300 PF02355 Protein export membrane protein CUB89_10300 PF07549 SecD/SecF GG Motif CUB89_10305 PF01522 Polysaccharide deacetylase CUB89_10305 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain CUB89_10340 PF01040 UbiA prenyltransferase family CUB89_10355 PF00749 tRNA synthetases class I (E and Q), catalytic domain CUB89_10360 PF03600 Citrate transporter CUB89_10360 PF02080 TrkA-C domain CUB89_10365 PF00625 Guanylate kinase CUB89_10370 PF08340 Domain of unknown function (DUF1732) CUB89_10370 PF03755 YicC-like family, N-terminal region CUB89_10375 PF00155 Aminotransferase class I and II CUB89_10395 PF02535 ZIP Zinc transporter CUB89_10405 PF00365 Phosphofructokinase CUB89_10410 PF07943 Penicillin-binding protein 5, C-terminal domain CUB89_10410 PF00768 D-alanyl-D-alanine carboxypeptidase CUB89_10425 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CUB89_10430 PF01250 Ribosomal protein S6 CUB89_10435 PF00117 Glutamine amidotransferase class-I CUB89_10440 PF00475 Imidazoleglycerol-phosphate dehydratase CUB89_10450 PF14693 Ribosomal protein TL5, C-terminal domain CUB89_10450 PF01386 Ribosomal L25p family CUB89_10455 PF14572 Phosphoribosyl synthetase-associated domain CUB89_10455 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CUB89_10480 PF01565 FAD binding domain CUB89_10480 PF02913 FAD linked oxidases, C-terminal domain CUB89_10485 PF10502 Signal peptidase, peptidase S26 CUB89_10495 PF13229 Right handed beta helix region CUB89_10505 PF04452 RNA methyltransferase CUB89_10510 PF00226 DnaJ domain CUB89_10510 PF00684 DnaJ central domain CUB89_10510 PF01556 DnaJ C terminal domain CUB89_10515 PF01025 GrpE CUB89_10520 PF02594 Uncharacterised ACR, YggU family COG1872 CUB89_10525 PF00977 Histidine biosynthesis protein CUB89_10545 PF17755 UvrA DNA-binding domain CUB89_10545 PF17760 UvrA interaction domain CUB89_10545 PF00005 ABC transporter CUB89_10565 PF01960 ArgJ family CUB89_10570 PF01118 Semialdehyde dehydrogenase, NAD binding domain CUB89_10570 PF02774 Semialdehyde dehydrogenase, dimerisation domain CUB89_10580 PF00528 Binding-protein-dependent transport system inner membrane component CUB89_10585 PF00005 ABC transporter CUB89_10605 PF00849 RNA pseudouridylate synthase CUB89_10605 PF01479 S4 domain CUB89_10610 PF00849 RNA pseudouridylate synthase CUB89_10610 PF01479 S4 domain CUB89_10615 PF00881 Nitroreductase family CUB89_10640 PF00056 lactate/malate dehydrogenase, NAD binding domain CUB89_10640 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CUB89_10645 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CUB89_10645 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CUB89_10645 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CUB89_10680 PF01197 Ribosomal protein L31 CUB89_10685 PF01171 PP-loop family CUB89_10685 PF11734 TilS substrate C-terminal domain CUB89_10690 PF07085 DRTGG domain CUB89_10690 PF01515 Phosphate acetyl/butaryl transferase CUB89_10695 PF02811 PHP domain CUB89_10710 PF07690 Major Facilitator Superfamily CUB89_10720 PF02559 CarD-like/TRCF domain CUB89_10720 PF03461 TRCF domain CUB89_10720 PF00271 Helicase conserved C-terminal domain CUB89_10720 PF00270 DEAD/DEAH box helicase CUB89_10720 PF17757 UvrB interaction domain CUB89_10725 PF03793 PASTA domain CUB89_10725 PF00069 Protein kinase domain CUB89_10730 PF00069 Protein kinase domain CUB89_10730 PF03793 PASTA domain CUB89_10735 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation CUB89_10735 PF14508 Glycosyl-hydrolase 97 N-terminal CUB89_10735 PF10566 Glycoside hydrolase 97 CUB89_10745 PF00162 Phosphoglycerate kinase CUB89_10750 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CUB89_10750 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CUB89_10755 PF01330 RuvA N terminal domain CUB89_10755 PF07499 RuvA, C-terminal domain CUB89_10770 PF13614 AAA domain CUB89_10770 PF02706 Chain length determinant protein CUB89_10770 PF13807 G-rich domain on putative tyrosine kinase CUB89_10775 PF02706 Chain length determinant protein CUB89_10810 PF00118 TCP-1/cpn60 chaperonin family CUB89_10815 PF00166 Chaperonin 10 Kd subunit CUB89_10820 PF00012 Hsp70 protein CUB89_10825 PF00534 Glycosyl transferases group 1 CUB89_10825 PF13439 Glycosyltransferase Family 4 CUB89_10840 PF02769 AIR synthase related protein, C-terminal domain CUB89_10840 PF00586 AIR synthase related protein, N-terminal domain CUB89_10845 PF01924 Hydrogenase formation hypA family CUB89_10850 PF01455 HupF/HypC family CUB89_10855 PF00708 Acylphosphatase CUB89_10855 PF07503 HypF finger CUB89_10855 PF01300 Telomere recombination CUB89_10855 PF17788 HypF Kae1-like domain CUB89_10860 PF07503 HypF finger CUB89_10860 PF00708 Acylphosphatase CUB89_10860 PF17788 HypF Kae1-like domain CUB89_10860 PF01300 Telomere recombination CUB89_10865 PF02492 CobW/HypB/UreG, nucleotide-binding domain CUB89_10870 PF03129 Anticodon binding domain CUB89_10870 PF13393 Histidyl-tRNA synthetase CUB89_10875 PF02938 GAD domain CUB89_10875 PF00152 tRNA synthetases class II (D, K and N) CUB89_10875 PF01336 OB-fold nucleic acid binding domain CUB89_10900 PF00155 Aminotransferase class I and II CUB89_10905 PF00109 Beta-ketoacyl synthase, N-terminal domain CUB89_10905 PF02801 Beta-ketoacyl synthase, C-terminal domain CUB89_10930 PF04551 GcpE protein CUB89_10940 PF00809 Pterin binding enzyme CUB89_10950 PF01066 CDP-alcohol phosphatidyltransferase CUB89_10955 PF02272 DHHA1 domain CUB89_10955 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CUB89_10955 PF01411 tRNA synthetases class II (A) CUB89_10960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUB89_10965 PF00005 ABC transporter CUB89_11025 PF11799 impB/mucB/samB family C-terminal domain CUB89_11025 PF00817 impB/mucB/samB family CUB89_11030 PF01641 SelR domain CUB89_11035 PF00109 Beta-ketoacyl synthase, N-terminal domain CUB89_11035 PF02801 Beta-ketoacyl synthase, C-terminal domain CUB89_11060 PF00209 Sodium:neurotransmitter symporter family CUB89_11065 PF00578 AhpC/TSA family CUB89_11065 PF10417 C-terminal domain of 1-Cys peroxiredoxin CUB89_11070 PF00924 Mechanosensitive ion channel CUB89_11070 PF05552 Conserved TM helix CUB89_11075 PF00696 Amino acid kinase family CUB89_11080 PF01765 Ribosome recycling factor CUB89_11120 PF00675 Insulinase (Peptidase family M16) CUB89_11120 PF05193 Peptidase M16 inactive domain CUB89_11135 PF01263 Aldose 1-epimerase CUB89_11145 PF00005 ABC transporter CUB89_11150 PF12849 PBP superfamily domain CUB89_11155 PF00528 Binding-protein-dependent transport system inner membrane component CUB89_11160 PF00528 Binding-protein-dependent transport system inner membrane component CUB89_11165 PF00005 ABC transporter CUB89_11170 PF01895 PhoU domain CUB89_11175 PF00291 Pyridoxal-phosphate dependent enzyme CUB89_11180 PF01507 Phosphoadenosine phosphosulfate reductase family CUB89_11185 PF01507 Phosphoadenosine phosphosulfate reductase family CUB89_11190 PF00009 Elongation factor Tu GTP binding domain CUB89_11200 PF00005 ABC transporter CUB89_11205 PF00528 Binding-protein-dependent transport system inner membrane component CUB89_11210 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CUB89_11210 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CUB89_11230 PF03781 Sulfatase-modifying factor enzyme 1 CUB89_11235 PF01136 Peptidase family U32 CUB89_11245 PF03989 DNA gyrase C-terminal domain, beta-propeller CUB89_11245 PF00521 DNA gyrase/topoisomerase IV, subunit A CUB89_11250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUB89_11250 PF00986 DNA gyrase B subunit, carboxyl terminus CUB89_11250 PF01751 Toprim domain CUB89_11250 PF00204 DNA gyrase B CUB89_11265 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CUB89_11265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CUB89_11270 PF00551 Formyl transferase CUB89_11275 PF02073 Thermophilic metalloprotease (M29) CUB89_11280 PF00149 Calcineurin-like phosphoesterase CUB89_11285 PF00999 Sodium/hydrogen exchanger family CUB89_11285 PF02254 TrkA-N domain CUB89_11330 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUB89_11330 PF00085 Thioredoxin CUB89_11335 PF03313 Serine dehydratase alpha chain CUB89_11335 PF03315 Serine dehydratase beta chain CUB89_11350 PF02774 Semialdehyde dehydrogenase, dimerisation domain CUB89_11350 PF01118 Semialdehyde dehydrogenase, NAD binding domain CUB89_11355 PF00348 Polyprenyl synthetase CUB89_11360 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CUB89_11360 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CUB89_11370 PF01263 Aldose 1-epimerase CUB89_11380 PF13472 GDSL-like Lipase/Acylhydrolase family CUB89_11380 PF07859 alpha/beta hydrolase fold CUB89_11395 PF00468 Ribosomal protein L34 CUB89_11400 PF00825 Ribonuclease P CUB89_11405 PF01809 Putative membrane protein insertion efficiency factor CUB89_11410 PF02096 60Kd inner membrane protein CUB89_11410 PF14849 YidC periplasmic domain CUB89_11420 PF01645 Conserved region in glutamate synthase CUB89_11420 PF04898 Glutamate synthase central domain CUB89_11420 PF00310 Glutamine amidotransferases class-II CUB89_11420 PF01493 GXGXG motif CUB89_11425 PF18318 Glutamine synthetase C-terminal domain CUB89_11425 PF12437 Glutamine synthetase type III N terminal CUB89_11425 PF00120 Glutamine synthetase, catalytic domain CUB89_11430 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CUB89_11430 PF02142 MGS-like domain CUB89_11430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUB89_11435 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CUB89_11435 PF00117 Glutamine amidotransferase class-I CUB89_11440 PF16363 GDP-mannose 4,6 dehydratase CUB89_11445 PF01370 NAD dependent epimerase/dehydratase family CUB89_11450 PF03553 Na+/H+ antiporter family CUB89_11460 PF01238 Phosphomannose isomerase type I CUB89_11470 PF02542 YgbB family CUB89_11475 PF00459 Inositol monophosphatase family CUB89_11480 PF00905 Penicillin binding protein transpeptidase domain CUB89_11480 PF00912 Transglycosylase CUB89_11480 PF17092 Penicillin-binding protein OB-like domain CUB89_11490 PF02472 Biopolymer transport protein ExbD/TolR CUB89_11495 PF01618 MotA/TolQ/ExbB proton channel family CUB89_11500 PF01541 GIY-YIG catalytic domain CUB89_11500 PF02151 UvrB/uvrC motif CUB89_11500 PF08459 UvrC Helix-hairpin-helix N-terminal CUB89_11505 PF02590 Predicted SPOUT methyltransferase CUB89_11510 PF00380 Ribosomal protein S9/S16 CUB89_11515 PF00572 Ribosomal protein L13 CUB89_11520 PF01176 Translation initiation factor 1A / IF-1 CUB89_11525 PF01256 Carbohydrate kinase CUB89_11525 PF03853 YjeF-related protein N-terminus CUB89_11530 PF04002 RadC-like JAB domain CUB89_11550 PF12169 DNA polymerase III subunits gamma and tau domain III CUB89_11555 PF02575 YbaB/EbfC DNA-binding family CUB89_11565 PF00571 CBS domain CUB89_11565 PF07085 DRTGG domain CUB89_11565 PF01368 DHH family CUB89_11565 PF02833 DHHA2 domain CUB89_11575 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CUB89_11630 PF01761 3-dehydroquinate synthase CUB89_11640 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CUB89_11655 PF00037 4Fe-4S binding domain CUB89_11655 PF13247 4Fe-4S dicluster domain CUB89_11665 PF17191 RecG wedge domain CUB89_11665 PF00271 Helicase conserved C-terminal domain CUB89_11665 PF00270 DEAD/DEAH box helicase CUB89_11670 PF01476 LysM domain CUB89_11670 PF01510 N-acetylmuramoyl-L-alanine amidase CUB89_11670 PF01471 Putative peptidoglycan binding domain CUB89_11685 PF01648 4'-phosphopantetheinyl transferase superfamily CUB89_11690 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CUB89_11695 PF02142 MGS-like domain CUB89_11695 PF01808 AICARFT/IMPCHase bienzyme CUB89_11700 PF01281 Ribosomal protein L9, N-terminal domain CUB89_11700 PF03948 Ribosomal protein L9, C-terminal domain CUB89_11705 PF01544 CorA-like Mg2+ transporter protein CUB89_11710 PF00696 Amino acid kinase family CUB89_11735 PF00005 ABC transporter CUB89_11740 PF13307 Helicase C-terminal domain CUB89_11740 PF06733 DEAD_2 CUB89_11750 PF08544 GHMP kinases C terminal CUB89_11750 PF00288 GHMP kinases N terminal domain CUB89_11755 PF01751 Toprim domain CUB89_11755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUB89_11755 PF00986 DNA gyrase B subunit, carboxyl terminus CUB89_11755 PF00204 DNA gyrase B CUB89_11760 PF01255 Putative undecaprenyl diphosphate synthase CUB89_11765 PF01050 Mannose-6-phosphate isomerase CUB89_11765 PF00483 Nucleotidyl transferase CUB89_11770 PF03652 Holliday junction resolvase CUB89_11780 PF00830 Ribosomal L28 family CUB89_11795 PF02424 ApbE family CUB89_11810 PF00113 Enolase, C-terminal TIM barrel domain CUB89_11810 PF03952 Enolase, N-terminal domain CUB89_11820 PF00884 Sulfatase CUB89_11835 PF07729 FCD domain CUB89_11835 PF00392 Bacterial regulatory proteins, gntR family CUB89_11840 PF00005 ABC transporter CUB89_11845 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CUB89_11845 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CUB89_11860 PF08338 Domain of unknown function (DUF1731) CUB89_11860 PF01370 NAD dependent epimerase/dehydratase family CUB89_11885 PF04235 Protein of unknown function (DUF418) CUB89_11890 PF07726 ATPase family associated with various cellular activities (AAA) CUB89_11890 PF17863 AAA lid domain CUB89_11900 PF00005 ABC transporter CUB89_11930 PF01212 Beta-eliminating lyase CUB89_11940 PF13411 MerR HTH family regulatory protein CUB89_11945 PF00248 Aldo/keto reductase family CUB89_11950 PF03793 PASTA domain CUB89_11950 PF00069 Protein kinase domain CUB89_11960 PF00753 Metallo-beta-lactamase superfamily CUB89_11960 PF16123 Hydroxyacylglutathione hydrolase C-terminus CUB89_11970 PF03781 Sulfatase-modifying factor enzyme 1 CUB89_11970 PF12867 DinB superfamily CUB89_11980 PF13493 Domain of unknown function (DUF4118) CUB89_11980 PF13492 GAF domain CUB89_11980 PF02702 Osmosensitive K+ channel His kinase sensor domain CUB89_11980 PF00512 His Kinase A (phospho-acceptor) domain CUB89_11980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUB89_11985 PF02669 K+-transporting ATPase, c chain CUB89_11995 PF03814 Potassium-transporting ATPase A subunit CUB89_12065 PF14220 Domain of unknown function (DUF4329) CUB89_12065 PF03527 RHS protein CUB89_12065 PF05593 RHS Repeat