locus-tag class description CUC06_00005 PF01368 DHH family CUC06_00005 PF02272 DHHA1 domain CUC06_00005 PF17768 RecJ OB domain CUC06_00010 PF02838 Glycosyl hydrolase family 20, domain 2 CUC06_00010 PF07555 beta-N-acetylglucosaminidase CUC06_00025 PF00005 ABC transporter CUC06_00030 PF00950 ABC 3 transport family CUC06_00035 PF02151 UvrB/uvrC motif CUC06_00040 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain CUC06_00045 PF07724 AAA domain (Cdc48 subfamily) CUC06_00045 PF10431 C-terminal, D2-small domain, of ClpB protein CUC06_00045 PF17871 AAA lid domain CUC06_00045 PF02861 Clp amino terminal domain, pathogenicity island component CUC06_00045 PF00004 ATPase family associated with various cellular activities (AAA) CUC06_00055 PF00581 Rhodanese-like domain CUC06_00060 PF01557 Fumarylacetoacetate (FAA) hydrolase family CUC06_00065 PF08502 LeuA allosteric (dimerisation) domain CUC06_00065 PF00682 HMGL-like CUC06_00080 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CUC06_00080 PF02542 YgbB family CUC06_00090 PF00579 tRNA synthetases class I (W and Y) CUC06_00100 PF13277 YmdB-like protein CUC06_00110 PF00899 ThiF family CUC06_00175 PF00069 Protein kinase domain CUC06_00175 PF03793 PASTA domain CUC06_00190 PF18273 Type III R-M EcoP15I C-terminal domain CUC06_00190 PF01555 DNA methylase CUC06_00195 PF08774 VRR-NUC domain CUC06_00195 PF04851 Type III restriction enzyme, res subunit CUC06_00265 PF00294 pfkB family carbohydrate kinase CUC06_00270 PF09297 NADH pyrophosphatase zinc ribbon domain CUC06_00270 PF00293 NUDIX domain CUC06_00270 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CUC06_00280 PF00155 Aminotransferase class I and II CUC06_00285 PF00069 Protein kinase domain CUC06_00290 PF13614 AAA domain CUC06_00295 PF00069 Protein kinase domain CUC06_00335 PF01119 DNA mismatch repair protein, C-terminal domain CUC06_00335 PF08676 MutL C terminal dimerisation domain CUC06_00345 PF04343 Protein of unknown function, DUF488 CUC06_00355 PF03900 Porphobilinogen deaminase, C-terminal domain CUC06_00355 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CUC06_00360 PF01488 Shikimate / quinate 5-dehydrogenase CUC06_00360 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CUC06_00370 PF02649 Type I GTP cyclohydrolase folE2 CUC06_00375 PF01084 Ribosomal protein S18 CUC06_00380 PF00471 Ribosomal protein L33 CUC06_00385 PF01258 Prokaryotic dksA/traR C4-type zinc finger CUC06_00390 PF00480 ROK family CUC06_00395 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CUC06_00395 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CUC06_00395 PF01189 16S rRNA methyltransferase RsmB/F CUC06_00405 PF00293 NUDIX domain CUC06_00410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC06_00410 PF00529 HlyD membrane-fusion protein of T1SS CUC06_00415 PF02687 FtsX-like permease family CUC06_00415 PF12704 MacB-like periplasmic core domain CUC06_00415 PF00005 ABC transporter CUC06_00420 PF00005 ABC transporter CUC06_00420 PF02687 FtsX-like permease family CUC06_00420 PF12704 MacB-like periplasmic core domain CUC06_00425 PF02321 Outer membrane efflux protein CUC06_00440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC06_00440 PF00529 HlyD membrane-fusion protein of T1SS CUC06_00485 PF01980 tRNA-methyltransferase O CUC06_00485 PF18389 TrmO C-terminal domain CUC06_00490 PF01979 Amidohydrolase family CUC06_00495 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CUC06_00495 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CUC06_00500 PF00156 Phosphoribosyl transferase domain CUC06_00505 PF00731 AIR carboxylase CUC06_00520 PF04371 Porphyromonas-type peptidyl-arginine deiminase CUC06_00530 PF17820 PDZ domain CUC06_00530 PF02163 Peptidase family M50 CUC06_00535 PF01594 AI-2E family transporter CUC06_00540 PF16385 Domain of unknown function CUC06_00540 PF00884 Sulfatase CUC06_00550 PF02421 Ferrous iron transport protein B CUC06_00550 PF07670 Nucleoside recognition CUC06_00550 PF17910 FeoB cytosolic helical domain CUC06_00550 PF07664 Ferrous iron transport protein B C terminus CUC06_00550 PF04023 FeoA domain CUC06_00585 PF00521 DNA gyrase/topoisomerase IV, subunit A CUC06_00620 PF02195 ParB-like nuclease domain CUC06_00620 PF17762 HTH domain found in ParB protein CUC06_00650 PF13593 SBF-like CPA transporter family (DUF4137) CUC06_00655 PF01479 S4 domain CUC06_00655 PF00579 tRNA synthetases class I (W and Y) CUC06_00675 PF00528 Binding-protein-dependent transport system inner membrane component CUC06_00675 PF12911 N-terminal TM domain of oligopeptide transport permease C CUC06_00680 PF00528 Binding-protein-dependent transport system inner membrane component CUC06_00685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC06_00695 PF03435 Saccharopine dehydrogenase NADP binding domain CUC06_00695 PF16653 Saccharopine dehydrogenase C-terminal domain CUC06_00725 PF00091 Tubulin/FtsZ family, GTPase domain CUC06_00725 PF12327 FtsZ family, C-terminal domain CUC06_00730 PF02491 SHS2 domain inserted in FTSA CUC06_00740 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CUC06_00740 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CUC06_00740 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CUC06_00740 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CUC06_00745 PF00664 ABC transporter transmembrane region CUC06_00745 PF00005 ABC transporter CUC06_00750 PF00664 ABC transporter transmembrane region CUC06_00750 PF00005 ABC transporter CUC06_00760 PF02405 Permease MlaE CUC06_00765 PF00005 ABC transporter CUC06_00770 PF02470 MlaD protein CUC06_00795 PF00437 Type II/IV secretion system protein CUC06_00800 PF00437 Type II/IV secretion system protein CUC06_00805 PF09312 SurA N-terminal domain CUC06_00805 PF00639 PPIC-type PPIASE domain CUC06_00820 PF02348 Cytidylyltransferase CUC06_00825 PF06418 CTP synthase N-terminus CUC06_00825 PF00117 Glutamine amidotransferase class-I CUC06_00830 PF00474 Sodium:solute symporter family CUC06_00855 PF13180 PDZ domain CUC06_00860 PF17092 Penicillin-binding protein OB-like domain CUC06_00860 PF00905 Penicillin binding protein transpeptidase domain CUC06_00860 PF00912 Transglycosylase CUC06_00865 PF02646 RmuC family CUC06_00870 PF13419 Haloacid dehalogenase-like hydrolase CUC06_00875 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CUC06_00875 PF00132 Bacterial transferase hexapeptide (six repeats) CUC06_00885 PF02687 FtsX-like permease family CUC06_00885 PF12704 MacB-like periplasmic core domain CUC06_00885 PF02687 FtsX-like permease family CUC06_00885 PF12704 MacB-like periplasmic core domain CUC06_00905 PF03527 RHS protein CUC06_00910 PF05593 RHS Repeat CUC06_00910 PF05488 PAAR motif CUC06_00935 PF03527 RHS protein CUC06_00970 PF04389 Peptidase family M28 CUC06_00975 PF07859 alpha/beta hydrolase fold CUC06_00975 PF13472 GDSL-like Lipase/Acylhydrolase family CUC06_00980 PF00133 tRNA synthetases class I (I, L, M and V) CUC06_00980 PF08264 Anticodon-binding domain of tRNA CUC06_00985 PF01252 Signal peptidase (SPase) II CUC06_01000 PF00266 Aminotransferase class-V CUC06_01010 PF08308 PEGA domain CUC06_01010 PF00069 Protein kinase domain CUC06_01020 PF01245 Ribosomal protein L19 CUC06_01035 PF01039 Carboxyl transferase domain CUC06_01045 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUC06_01045 PF02436 Conserved carboxylase domain CUC06_01045 PF00682 HMGL-like CUC06_01045 PF02785 Biotin carboxylase C-terminal domain CUC06_01045 PF00364 Biotin-requiring enzyme CUC06_01045 PF00289 Biotin carboxylase, N-terminal domain CUC06_01050 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CUC06_01055 PF08279 HTH domain CUC06_01055 PF03099 Biotin/lipoate A/B protein ligase family CUC06_01055 PF02237 Biotin protein ligase C terminal domain CUC06_01060 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CUC06_01060 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CUC06_01075 PF00483 Nucleotidyl transferase CUC06_01080 PF16363 GDP-mannose 4,6 dehydratase CUC06_01085 PF00365 Phosphofructokinase CUC06_01095 PF02934 GatB/GatE catalytic domain CUC06_01095 PF02637 GatB domain CUC06_01100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CUC06_01100 PF00205 Thiamine pyrophosphate enzyme, central domain CUC06_01100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUC06_01120 PF00689 Cation transporting ATPase, C-terminus CUC06_01120 PF00690 Cation transporter/ATPase, N-terminus CUC06_01125 PF00529 HlyD membrane-fusion protein of T1SS CUC06_01125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC06_01130 PF00873 AcrB/AcrD/AcrF family CUC06_01135 PF00939 Sodium:sulfate symporter transmembrane region CUC06_01145 PF08543 Phosphomethylpyrimidine kinase CUC06_01210 PF01327 Polypeptide deformylase CUC06_01215 PF00107 Zinc-binding dehydrogenase CUC06_01215 PF08240 Alcohol dehydrogenase GroES-like domain CUC06_01220 PF11897 Protein of unknown function (DUF3417) CUC06_01220 PF00343 Carbohydrate phosphorylase CUC06_01225 PF00027 Cyclic nucleotide-binding domain CUC06_01225 PF00520 Ion transport protein CUC06_01230 PF03960 ArsC family CUC06_01235 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CUC06_01235 PF00753 Metallo-beta-lactamase superfamily CUC06_01235 PF10996 Beta-Casp domain CUC06_01255 PF00849 RNA pseudouridylate synthase CUC06_01255 PF01479 S4 domain CUC06_01265 PF01746 tRNA (Guanine-1)-methyltransferase CUC06_01270 PF03462 PCRF domain CUC06_01270 PF00472 RF-1 domain CUC06_01280 PF00575 S1 RNA binding domain CUC06_01330 PF02548 Ketopantoate hydroxymethyltransferase CUC06_01335 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CUC06_01340 PF05173 Dihydrodipicolinate reductase, C-terminus CUC06_01340 PF01113 Dihydrodipicolinate reductase, N-terminus CUC06_01345 PF00701 Dihydrodipicolinate synthetase family CUC06_01385 PF00578 AhpC/TSA family CUC06_01465 PF04170 NlpE N-terminal domain CUC06_01465 PF17185 NlpE C-terminal OB domain CUC06_01540 PF03796 DnaB-like helicase C terminal domain CUC06_01540 PF00772 DnaB-like helicase N terminal domain CUC06_01640 PF02899 Phage integrase, N-terminal SAM-like domain CUC06_01640 PF00589 Phage integrase family CUC06_01650 PF07883 Cupin domain CUC06_01650 PF02130 Uncharacterized protein family UPF0054 CUC06_01655 PF01966 HD domain CUC06_01655 PF07697 7TM-HD extracellular CUC06_01655 PF07698 7TM receptor with intracellular HD hydrolase CUC06_01660 PF02504 Fatty acid synthesis protein CUC06_01665 PF01783 Ribosomal L32p protein family CUC06_01675 PF01230 HIT domain CUC06_01680 PF01300 Telomere recombination CUC06_01680 PF03481 Putative GTP-binding controlling metal-binding CUC06_01685 PF01202 Shikimate kinase CUC06_01690 PF00886 Ribosomal protein S16 CUC06_01705 PF00589 Phage integrase family CUC06_01705 PF02899 Phage integrase, N-terminal SAM-like domain CUC06_01720 PF02699 Preprotein translocase subunit CUC06_01725 PF01702 Queuine tRNA-ribosyltransferase CUC06_01730 PF02390 Putative methyltransferase CUC06_01740 PF05036 Sporulation related domain CUC06_01740 PF03330 Lytic transglycolase CUC06_01745 PF01351 Ribonuclease HII CUC06_01745 PF11858 Domain of unknown function (DUF3378) CUC06_01750 PF00216 Bacterial DNA-binding protein CUC06_01785 PF01618 MotA/TolQ/ExbB proton channel family CUC06_01805 PF16355 Domain of unknown function (DUF4982) CUC06_01805 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CUC06_01805 PF00703 Glycosyl hydrolases family 2 CUC06_01805 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CUC06_01805 PF02837 Glycosyl hydrolases family 2, sugar binding domain CUC06_01810 PF00133 tRNA synthetases class I (I, L, M and V) CUC06_01810 PF08264 Anticodon-binding domain of tRNA CUC06_01810 PF10458 Valyl tRNA synthetase tRNA binding arm CUC06_01820 PF00238 Ribosomal protein L14p/L23e CUC06_01825 PF00366 Ribosomal protein S17 CUC06_01830 PF00831 Ribosomal L29 protein CUC06_01835 PF00252 Ribosomal protein L16p/L10e CUC06_01840 PF00189 Ribosomal protein S3, C-terminal domain CUC06_01840 PF07650 KH domain CUC06_01845 PF00237 Ribosomal protein L22p/L17e CUC06_01855 PF00203 Ribosomal protein S19 CUC06_01860 PF00181 Ribosomal Proteins L2, RNA binding domain CUC06_01860 PF03947 Ribosomal Proteins L2, C-terminal domain CUC06_01865 PF00276 Ribosomal protein L23 CUC06_01870 PF00573 Ribosomal protein L4/L1 family CUC06_01875 PF00297 Ribosomal protein L3 CUC06_01880 PF00338 Ribosomal protein S10p/S20e CUC06_01885 PF14492 Elongation Factor G, domain II CUC06_01885 PF03764 Elongation factor G, domain IV CUC06_01885 PF00009 Elongation factor Tu GTP binding domain CUC06_01885 PF03144 Elongation factor Tu domain 2 CUC06_01885 PF00679 Elongation factor G C-terminus CUC06_01890 PF00177 Ribosomal protein S7p/S5e CUC06_01895 PF00164 Ribosomal protein S12/S23 CUC06_01905 PF01676 Metalloenzyme superfamily CUC06_01905 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CUC06_01915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC06_01915 PF00512 His Kinase A (phospho-acceptor) domain CUC06_01915 PF00989 PAS fold CUC06_01920 PF00158 Sigma-54 interaction domain CUC06_01920 PF00072 Response regulator receiver domain CUC06_01920 PF02954 Bacterial regulatory protein, Fis family CUC06_01930 PF02609 Exonuclease VII small subunit CUC06_01935 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CUC06_01935 PF02780 Transketolase, C-terminal domain CUC06_01935 PF02779 Transketolase, pyrimidine binding domain CUC06_01950 PF03739 Lipopolysaccharide export system permease LptF/LptG CUC06_01955 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CUC06_01955 PF01926 50S ribosome-binding GTPase CUC06_01960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC06_01960 PF00005 ABC transporter CUC06_01975 PF00005 ABC transporter CUC06_01975 PF12704 MacB-like periplasmic core domain CUC06_01975 PF02687 FtsX-like permease family CUC06_01985 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CUC06_01985 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CUC06_02020 PF02683 Cytochrome C biogenesis protein transmembrane region CUC06_02020 PF11412 Disulphide bond corrector protein DsbC CUC06_02035 PF05190 MutS family domain IV CUC06_02035 PF00488 MutS domain V CUC06_02035 PF01624 MutS domain I CUC06_02035 PF05192 MutS domain III CUC06_02035 PF05188 MutS domain II CUC06_02050 PF17862 AAA+ lid domain CUC06_02050 PF01434 Peptidase family M41 CUC06_02050 PF00004 ATPase family associated with various cellular activities (AAA) CUC06_02070 PF00378 Enoyl-CoA hydratase/isomerase CUC06_02115 PF00005 ABC transporter CUC06_02130 PF00005 ABC transporter CUC06_02130 PF12857 TOBE-like domain CUC06_02140 PF00106 short chain dehydrogenase CUC06_02155 PF01590 GAF domain CUC06_02155 PF00158 Sigma-54 interaction domain CUC06_02155 PF02954 Bacterial regulatory protein, Fis family CUC06_02160 PF00654 Voltage gated chloride channel CUC06_02170 PF07691 PA14 domain CUC06_02170 PF02838 Glycosyl hydrolase family 20, domain 2 CUC06_02170 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC06_02185 PF00282 Pyridoxal-dependent decarboxylase conserved domain CUC06_02195 PF07733 Bacterial DNA polymerase III alpha NTPase domain CUC06_02195 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CUC06_02195 PF01336 OB-fold nucleic acid binding domain CUC06_02195 PF02811 PHP domain CUC06_02195 PF14579 Helix-hairpin-helix motif CUC06_02200 PF01180 Dihydroorotate dehydrogenase CUC06_02205 PF02581 Thiamine monophosphate synthase CUC06_02225 PF00571 CBS domain CUC06_02225 PF03471 Transporter associated domain CUC06_02225 PF01595 Cyclin M transmembrane N-terminal domain CUC06_02230 PF00571 CBS domain CUC06_02230 PF03471 Transporter associated domain CUC06_02230 PF01595 Cyclin M transmembrane N-terminal domain CUC06_02235 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CUC06_02235 PF00013 KH domain CUC06_02235 PF00575 S1 RNA binding domain CUC06_02235 PF01138 3' exoribonuclease family, domain 1 CUC06_02235 PF03725 3' exoribonuclease family, domain 2 CUC06_02240 PF00312 Ribosomal protein S15 CUC06_02270 PF01416 tRNA pseudouridine synthase CUC06_02275 PF01467 Cytidylyltransferase-like CUC06_02295 PF07963 Prokaryotic N-terminal methylation motif CUC06_02295 PF14245 Type IV pilin PilA CUC06_02300 PF03725 3' exoribonuclease family, domain 2 CUC06_02300 PF01138 3' exoribonuclease family, domain 1 CUC06_02310 PF07691 PA14 domain CUC06_02310 PF02838 Glycosyl hydrolase family 20, domain 2 CUC06_02310 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC06_02320 PF02457 DisA bacterial checkpoint controller nucleotide-binding CUC06_02335 PF00005 ABC transporter CUC06_02340 PF02569 Pantoate-beta-alanine ligase CUC06_02350 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CUC06_02350 PF00132 Bacterial transferase hexapeptide (six repeats) CUC06_02355 PF00528 Binding-protein-dependent transport system inner membrane component CUC06_02360 PF00005 ABC transporter CUC06_02375 PF07555 beta-N-acetylglucosaminidase CUC06_02375 PF02838 Glycosyl hydrolase family 20, domain 2 CUC06_02385 PF13580 SIS domain CUC06_02390 PF00294 pfkB family carbohydrate kinase CUC06_02390 PF01467 Cytidylyltransferase-like CUC06_02400 PF01165 Ribosomal protein S21 CUC06_02405 PF00202 Aminotransferase class-III CUC06_02415 PF00083 Sugar (and other) transporter CUC06_02425 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CUC06_02425 PF00749 tRNA synthetases class I (E and Q), catalytic domain CUC06_02430 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CUC06_02430 PF00925 GTP cyclohydrolase II CUC06_02435 PF00885 6,7-dimethyl-8-ribityllumazine synthase CUC06_02440 PF01029 NusB family CUC06_02445 PF00448 SRP54-type protein, GTPase domain CUC06_02445 PF02881 SRP54-type protein, helical bundle domain CUC06_02450 PF04055 Radical SAM superfamily CUC06_02455 PF00772 DnaB-like helicase N terminal domain CUC06_02455 PF03796 DnaB-like helicase C terminal domain CUC06_02465 PF04191 Phospholipid methyltransferase CUC06_02470 PF00994 Probable molybdopterin binding domain CUC06_02470 PF02464 Competence-damaged protein CUC06_02470 PF18146 Damage-inducible protein CinA KH domain CUC06_02475 PF00224 Pyruvate kinase, barrel domain CUC06_02475 PF00391 PEP-utilising enzyme, mobile domain CUC06_02475 PF02887 Pyruvate kinase, alpha/beta domain CUC06_02480 PF00583 Acetyltransferase (GNAT) family CUC06_02505 PF00163 Ribosomal protein S4/S9 N-terminal domain CUC06_02505 PF01479 S4 domain CUC06_02510 PF00411 Ribosomal protein S11 CUC06_02515 PF00416 Ribosomal protein S13/S18 CUC06_02520 PF08331 Domain of unknown function (DUF1730) CUC06_02535 PF17782 DprA winged helix domain CUC06_02535 PF02481 DNA recombination-mediator protein A CUC06_02540 PF07943 Penicillin-binding protein 5, C-terminal domain CUC06_02540 PF00768 D-alanyl-D-alanine carboxypeptidase CUC06_02545 PF06071 Protein of unknown function (DUF933) CUC06_02545 PF01926 50S ribosome-binding GTPase CUC06_02555 PF01597 Glycine cleavage H-protein CUC06_02560 PF02347 Glycine cleavage system P-protein CUC06_02575 PF00884 Sulfatase CUC06_02575 PF16385 Domain of unknown function CUC06_02580 PF00271 Helicase conserved C-terminal domain CUC06_02580 PF03880 DbpA RNA binding domain CUC06_02580 PF00270 DEAD/DEAH box helicase CUC06_02600 PF07681 DoxX CUC06_02605 PF02769 AIR synthase related protein, C-terminal domain CUC06_02605 PF00586 AIR synthase related protein, N-terminal domain CUC06_02610 PF00156 Phosphoribosyl transferase domain CUC06_02615 PF08281 Sigma-70, region 4 CUC06_02615 PF04542 Sigma-70 region 2 CUC06_02635 PF02441 Flavoprotein CUC06_02655 PF03976 Polyphosphate kinase 2 (PPK2) CUC06_02660 PF08220 DeoR-like helix-turn-helix domain CUC06_02660 PF00455 DeoR C terminal sensor domain CUC06_02675 PF00266 Aminotransferase class-V CUC06_02680 PF02441 Flavoprotein CUC06_02680 PF04127 DNA / pantothenate metabolism flavoprotein CUC06_02685 PF03193 RsgA GTPase CUC06_02715 PF03976 Polyphosphate kinase 2 (PPK2) CUC06_02725 PF08305 NPCBM/NEW2 domain CUC06_02735 PF12146 Serine aminopeptidase, S33 CUC06_02740 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CUC06_02750 PF01016 Ribosomal L27 protein CUC06_02755 PF01475 Ferric uptake regulator family CUC06_02760 PF00005 ABC transporter CUC06_02765 PF01458 Uncharacterized protein family (UPF0051) CUC06_02770 PF01458 Uncharacterized protein family (UPF0051) CUC06_02780 PF00884 Sulfatase CUC06_02785 PF06968 Biotin and Thiamin Synthesis associated domain CUC06_02785 PF04055 Radical SAM superfamily CUC06_02790 PF00202 Aminotransferase class-III CUC06_02820 PF00535 Glycosyl transferase family 2 CUC06_02830 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CUC06_02850 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CUC06_02850 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CUC06_02855 PF02874 ATP synthase alpha/beta family, beta-barrel domain CUC06_02855 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUC06_02860 PF00231 ATP synthase CUC06_02865 PF02874 ATP synthase alpha/beta family, beta-barrel domain CUC06_02865 PF00306 ATP synthase alpha/beta chain, C terminal domain CUC06_02865 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUC06_02870 PF00213 ATP synthase delta (OSCP) subunit CUC06_02875 PF00430 ATP synthase B/B' CF(0) CUC06_02880 PF00137 ATP synthase subunit C CUC06_02885 PF00119 ATP synthase A chain CUC06_02895 PF03717 Penicillin-binding Protein dimerisation domain CUC06_02895 PF00905 Penicillin binding protein transpeptidase domain CUC06_02935 PF00899 ThiF family CUC06_02940 PF00571 CBS domain CUC06_02940 PF01380 SIS domain CUC06_02970 PF00171 Aldehyde dehydrogenase family CUC06_02975 PF00696 Amino acid kinase family CUC06_02975 PF01472 PUA domain CUC06_02980 PF02779 Transketolase, pyrimidine binding domain CUC06_02980 PF02780 Transketolase, C-terminal domain CUC06_02980 PF00456 Transketolase, thiamine diphosphate binding domain CUC06_02985 PF03449 Transcription elongation factor, N-terminal CUC06_02985 PF01272 Transcription elongation factor, GreA/GreB, C-term CUC06_02990 PF01259 SAICAR synthetase CUC06_03000 PF00586 AIR synthase related protein, N-terminal domain CUC06_03000 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CUC06_03000 PF02769 AIR synthase related protein, C-terminal domain CUC06_03015 PF05343 M42 glutamyl aminopeptidase CUC06_03025 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CUC06_03025 PF00703 Glycosyl hydrolases family 2 CUC06_03025 PF02837 Glycosyl hydrolases family 2, sugar binding domain CUC06_03025 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CUC06_03035 PF10150 Ribonuclease E/G family CUC06_03035 PF00575 S1 RNA binding domain CUC06_03065 PF02472 Biopolymer transport protein ExbD/TolR CUC06_03080 PF00730 HhH-GPD superfamily base excision DNA repair protein CUC06_03105 PF00218 Indole-3-glycerol phosphate synthase CUC06_03110 PF02021 Uncharacterised protein family UPF0102 CUC06_03115 PF01351 Ribonuclease HII CUC06_03120 PF03471 Transporter associated domain CUC06_03120 PF01595 Cyclin M transmembrane N-terminal domain CUC06_03120 PF00571 CBS domain CUC06_03130 PF00253 Ribosomal protein S14p/S29e CUC06_03145 PF00764 Arginosuccinate synthase CUC06_03150 PF00884 Sulfatase CUC06_03155 PF01029 NusB family CUC06_03155 PF01189 16S rRNA methyltransferase RsmB/F CUC06_03160 PF00121 Triosephosphate isomerase CUC06_03175 PF00884 Sulfatase CUC06_03205 PF03819 MazG nucleotide pyrophosphohydrolase domain CUC06_03215 PF00570 HRDC domain CUC06_03215 PF01612 3'-5' exonuclease CUC06_03230 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CUC06_03240 PF05193 Peptidase M16 inactive domain CUC06_03240 PF00675 Insulinase (Peptidase family M16) CUC06_03260 PF02677 Epoxyqueuosine reductase QueH CUC06_03265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC06_03265 PF03466 LysR substrate binding domain CUC06_03270 PF02219 Methylenetetrahydrofolate reductase CUC06_03275 PF01717 Cobalamin-independent synthase, Catalytic domain CUC06_03275 PF08267 Cobalamin-independent synthase, N-terminal domain CUC06_03295 PF01118 Semialdehyde dehydrogenase, NAD binding domain CUC06_03295 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain CUC06_03300 PF03734 L,D-transpeptidase catalytic domain CUC06_03320 PF00585 C-terminal regulatory domain of Threonine dehydratase CUC06_03320 PF00291 Pyridoxal-phosphate dependent enzyme CUC06_03325 PF02545 Maf-like protein CUC06_03330 PF13167 GTP-binding GTPase N-terminal CUC06_03330 PF16360 GTP-binding GTPase Middle Region CUC06_03330 PF01926 50S ribosome-binding GTPase CUC06_03335 PF00069 Protein kinase domain CUC06_03350 PF00586 AIR synthase related protein, N-terminal domain CUC06_03350 PF02769 AIR synthase related protein, C-terminal domain CUC06_03360 PF02224 Cytidylate kinase CUC06_03370 PF02463 RecF/RecN/SMC N terminal domain CUC06_03380 PF00035 Double-stranded RNA binding motif CUC06_03380 PF14622 Ribonuclease-III-like CUC06_03395 PF03372 Endonuclease/Exonuclease/phosphatase family CUC06_03400 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CUC06_03415 PF01502 Phosphoribosyl-AMP cyclohydrolase CUC06_03420 PF09115 DNA polymerase III, delta subunit, C terminal CUC06_03435 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CUC06_03435 PF02142 MGS-like domain CUC06_03435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUC06_03450 PF08241 Methyltransferase domain CUC06_03455 PF02540 NAD synthase CUC06_03455 PF00795 Carbon-nitrogen hydrolase CUC06_03460 PF00893 Small Multidrug Resistance protein CUC06_03530 PF05496 Holliday junction DNA helicase RuvB P-loop domain CUC06_03530 PF05491 RuvB C-terminal winged helix domain CUC06_03530 PF17864 RuvB AAA lid domain CUC06_03535 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CUC06_03535 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CUC06_03540 PF00175 Oxidoreductase NAD-binding domain CUC06_03540 PF00667 FAD binding domain CUC06_03540 PF00258 Flavodoxin CUC06_03545 PF00535 Glycosyl transferase family 2 CUC06_03550 PF00535 Glycosyl transferase family 2 CUC06_03575 PF00534 Glycosyl transferases group 1 CUC06_03585 PF01757 Acyltransferase family CUC06_03610 PF12631 MnmE helical domain CUC06_03610 PF10396 GTP-binding protein TrmE N-terminus CUC06_03610 PF01926 50S ribosome-binding GTPase CUC06_03620 PF03458 UPF0126 domain CUC06_03625 PF10996 Beta-Casp domain CUC06_03625 PF00753 Metallo-beta-lactamase superfamily CUC06_03625 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CUC06_03630 PF02381 MraZ protein, putative antitoxin-like CUC06_03635 PF01795 MraW methylase family CUC06_03645 PF03717 Penicillin-binding Protein dimerisation domain CUC06_03645 PF03793 PASTA domain CUC06_03645 PF00905 Penicillin binding protein transpeptidase domain CUC06_03650 PF08245 Mur ligase middle domain CUC06_03650 PF02875 Mur ligase family, glutamate ligase domain CUC06_03650 PF01225 Mur ligase family, catalytic domain CUC06_03655 PF01225 Mur ligase family, catalytic domain CUC06_03655 PF02875 Mur ligase family, glutamate ligase domain CUC06_03655 PF08245 Mur ligase middle domain CUC06_03660 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CUC06_03660 PF00953 Glycosyl transferase family 4 CUC06_03665 PF08245 Mur ligase middle domain CUC06_03665 PF02875 Mur ligase family, glutamate ligase domain CUC06_03675 PF01098 Cell cycle protein CUC06_03680 PF03033 Glycosyltransferase family 28 N-terminal domain CUC06_03680 PF04101 Glycosyltransferase family 28 C-terminal domain CUC06_03685 PF02875 Mur ligase family, glutamate ligase domain CUC06_03685 PF08245 Mur ligase middle domain CUC06_03685 PF01225 Mur ligase family, catalytic domain CUC06_03690 PF01820 D-ala D-ala ligase N-terminus CUC06_03690 PF07478 D-ala D-ala ligase C-terminus CUC06_03700 PF00154 recA bacterial DNA recombination protein CUC06_03705 PF01520 N-acetylmuramoyl-L-alanine amidase CUC06_03710 PF03099 Biotin/lipoate A/B protein ligase family CUC06_03715 PF00330 Aconitase family (aconitate hydratase) CUC06_03720 PF00694 Aconitase C-terminal domain CUC06_03730 PF13180 PDZ domain CUC06_03730 PF17820 PDZ domain CUC06_03740 PF01761 3-dehydroquinate synthase CUC06_03750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC06_03750 PF00005 ABC transporter CUC06_03760 PF00889 Elongation factor TS CUC06_03775 PF00793 DAHP synthetase I family CUC06_03790 PF12399 Branched-chain amino acid ATP-binding cassette transporter CUC06_03790 PF00005 ABC transporter CUC06_03800 PF01225 Mur ligase family, catalytic domain CUC06_03800 PF08245 Mur ligase middle domain CUC06_03800 PF02875 Mur ligase family, glutamate ligase domain CUC06_03805 PF00691 OmpA family CUC06_03810 PF13361 UvrD-like helicase C-terminal domain CUC06_03810 PF00580 UvrD/REP helicase N-terminal domain CUC06_03830 PF00152 tRNA synthetases class II (D, K and N) CUC06_03830 PF01336 OB-fold nucleic acid binding domain CUC06_03840 PF00085 Thioredoxin CUC06_03885 PF03466 LysR substrate binding domain CUC06_03885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC06_03890 PF03601 Conserved hypothetical protein 698 CUC06_03895 PF00266 Aminotransferase class-V CUC06_03910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CUC06_03910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CUC06_03910 PF01842 ACT domain CUC06_03920 PF04055 Radical SAM superfamily CUC06_03925 PF07497 Rho termination factor, RNA-binding domain CUC06_03925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUC06_03925 PF07498 Rho termination factor, N-terminal domain CUC06_03930 PF01709 Transcriptional regulator CUC06_03935 PF01545 Cation efflux family CUC06_03935 PF16916 Dimerisation domain of Zinc Transporter CUC06_03940 PF00999 Sodium/hydrogen exchanger family CUC06_03940 PF02254 TrkA-N domain CUC06_03950 PF02547 Queuosine biosynthesis protein CUC06_03955 PF12127 SigmaW regulon antibacterial CUC06_03965 PF05690 Thiazole biosynthesis protein ThiG CUC06_03970 PF13520 Amino acid permease CUC06_03980 PF01594 AI-2E family transporter CUC06_03985 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CUC06_03985 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CUC06_03990 PF01116 Fructose-bisphosphate aldolase class-II CUC06_04000 PF01063 Amino-transferase class IV CUC06_04005 PF00722 Glycosyl hydrolases family 16 CUC06_04010 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CUC06_04010 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CUC06_04030 PF01926 50S ribosome-binding GTPase CUC06_04030 PF01018 GTP1/OBG CUC06_04035 PF01636 Phosphotransferase enzyme family CUC06_04075 PF01451 Low molecular weight phosphotyrosine protein phosphatase CUC06_04080 PF00571 CBS domain CUC06_04080 PF00478 IMP dehydrogenase / GMP reductase domain CUC06_04085 PF02540 NAD synthase CUC06_04085 PF00117 Glutamine amidotransferase class-I CUC06_04085 PF00958 GMP synthase C terminal domain CUC06_04090 PF01381 Helix-turn-helix CUC06_04090 PF00145 C-5 cytosine-specific DNA methylase CUC06_04095 PF09217 Restriction endonuclease EcoRII, N-terminal CUC06_04095 PF09019 EcoRII C terminal CUC06_04100 PF03852 DNA mismatch endonuclease Vsr CUC06_04105 PF12464 Maltose acetyltransferase CUC06_04105 PF14602 Hexapeptide repeat of succinyl-transferase CUC06_04110 PF13419 Haloacid dehalogenase-like hydrolase CUC06_04135 PF00793 DAHP synthetase I family CUC06_04140 PF00114 Pilin (bacterial filament) CUC06_04140 PF07963 Prokaryotic N-terminal methylation motif CUC06_04150 PF02261 Aspartate decarboxylase CUC06_04155 PF01687 Riboflavin kinase CUC06_04155 PF06574 FAD synthetase CUC06_04160 PF01509 TruB family pseudouridylate synthase (N terminal domain) CUC06_04160 PF16198 tRNA pseudouridylate synthase B C-terminal domain CUC06_04175 PF00149 Calcineurin-like phosphoesterase CUC06_04180 PF08759 Glycosyltransferase GT-D fold CUC06_04180 PF01501 Glycosyl transferase family 8 CUC06_04185 PF00535 Glycosyl transferase family 2 CUC06_04185 PF01501 Glycosyl transferase family 8 CUC06_04195 PF01370 NAD dependent epimerase/dehydratase family CUC06_04200 PF00535 Glycosyl transferase family 2 CUC06_04220 PF01757 Acyltransferase family CUC06_04235 PF03600 Citrate transporter CUC06_04235 PF02080 TrkA-C domain CUC06_04275 PF01301 Glycosyl hydrolases family 35 CUC06_04280 PF00300 Histidine phosphatase superfamily (branch 1) CUC06_04285 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CUC06_04285 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CUC06_04295 PF07690 Major Facilitator Superfamily CUC06_04300 PF03061 Thioesterase superfamily CUC06_04320 PF00565 Staphylococcal nuclease homologue CUC06_04335 PF02195 ParB-like nuclease domain CUC06_04340 PF11922 Domain of unknown function (DUF3440) CUC06_04340 PF01507 Phosphoadenosine phosphosulfate reductase family CUC06_04355 PF00180 Isocitrate/isopropylmalate dehydrogenase CUC06_04370 PF01078 Magnesium chelatase, subunit ChlI CUC06_04370 PF13335 Magnesium chelatase, subunit ChlI C-terminal CUC06_04380 PF01053 Cys/Met metabolism PLP-dependent enzyme CUC06_04390 PF13186 Iron-sulfur cluster-binding domain CUC06_04390 PF04055 Radical SAM superfamily CUC06_04405 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CUC06_04405 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CUC06_04410 PF02660 Glycerol-3-phosphate acyltransferase CUC06_04420 PF00152 tRNA synthetases class II (D, K and N) CUC06_04420 PF01336 OB-fold nucleic acid binding domain CUC06_04440 PF01638 HxlR-like helix-turn-helix CUC06_04450 PF00977 Histidine biosynthesis protein CUC06_04460 PF02386 Cation transport protein CUC06_04470 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CUC06_04470 PF00270 DEAD/DEAH box helicase CUC06_04470 PF00271 Helicase conserved C-terminal domain CUC06_04470 PF04408 Helicase associated domain (HA2) CUC06_04470 PF11898 Domain of unknown function (DUF3418) CUC06_04475 PF10369 Small subunit of acetolactate synthase CUC06_04480 PF13180 PDZ domain CUC06_04480 PF00595 PDZ domain CUC06_04490 PF13932 GidA associated domain CUC06_04490 PF01134 Glucose inhibited division protein A CUC06_04495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CUC06_04495 PF01872 RibD C-terminal domain CUC06_04500 PF02768 DNA polymerase III beta subunit, C-terminal domain CUC06_04500 PF02767 DNA polymerase III beta subunit, central domain CUC06_04500 PF00712 DNA polymerase III beta subunit, N-terminal domain CUC06_04525 PF01476 LysM domain CUC06_04525 PF00877 NlpC/P60 family CUC06_04530 PF01026 TatD related DNase CUC06_04540 PF16353 Domain of unknown function(DUF4981) CUC06_04540 PF00703 Glycosyl hydrolases family 2 CUC06_04540 PF02929 Beta galactosidase small chain CUC06_04540 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CUC06_04540 PF02837 Glycosyl hydrolases family 2, sugar binding domain CUC06_04555 PF02702 Osmosensitive K+ channel His kinase sensor domain CUC06_04555 PF13492 GAF domain CUC06_04555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC06_04555 PF00512 His Kinase A (phospho-acceptor) domain CUC06_04555 PF13493 Domain of unknown function (DUF4118) CUC06_04560 PF00486 Transcriptional regulatory protein, C terminal CUC06_04560 PF00072 Response regulator receiver domain CUC06_04570 PF03814 Potassium-transporting ATPase A subunit CUC06_04580 PF02669 K+-transporting ATPase, c chain CUC06_04595 PF17871 AAA lid domain CUC06_04595 PF02861 Clp amino terminal domain, pathogenicity island component CUC06_04595 PF00004 ATPase family associated with various cellular activities (AAA) CUC06_04595 PF10431 C-terminal, D2-small domain, of ClpB protein CUC06_04595 PF07724 AAA domain (Cdc48 subfamily) CUC06_04645 PF03477 ATP cone domain CUC06_04655 PF01740 STAS domain CUC06_04655 PF00916 Sulfate permease family CUC06_04660 PF00206 Lyase CUC06_04660 PF14698 Argininosuccinate lyase C-terminal CUC06_04675 PF00113 Enolase, C-terminal TIM barrel domain CUC06_04675 PF03952 Enolase, N-terminal domain CUC06_04680 PF01261 Xylose isomerase-like TIM barrel CUC06_04685 PF13088 BNR repeat-like domain CUC06_04685 PF00754 F5/8 type C domain CUC06_04685 PF02973 Sialidase, N-terminal domain CUC06_04690 PF01336 OB-fold nucleic acid binding domain CUC06_04690 PF01966 HD domain CUC06_04700 PF01938 TRAM domain CUC06_04700 PF00919 Uncharacterized protein family UPF0004 CUC06_04700 PF04055 Radical SAM superfamily CUC06_04705 PF05958 tRNA (Uracil-5-)-methyltransferase CUC06_04705 PF01938 TRAM domain CUC06_04720 PF12161 HsdM N-terminal domain CUC06_04720 PF02384 N-6 DNA Methylase CUC06_04725 PF01420 Type I restriction modification DNA specificity domain CUC06_04735 PF12008 Type I restriction and modification enzyme - subunit R C terminal CUC06_04735 PF18766 SWI2/SNF2 ATPase CUC06_04735 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CUC06_04745 PF00216 Bacterial DNA-binding protein CUC06_04750 PF16874 Glycosyl hydrolase family 36 C-terminal domain CUC06_04750 PF16875 Glycosyl hydrolase family 36 N-terminal domain CUC06_04770 PF06826 Predicted Permease Membrane Region CUC06_04770 PF02080 TrkA-C domain CUC06_04780 PF00989 PAS fold CUC06_04780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC06_04780 PF00512 His Kinase A (phospho-acceptor) domain CUC06_04785 PF00939 Sodium:sulfate symporter transmembrane region CUC06_04810 PF08019 Phosphoethanolamine transferase EptA/EptB CUC06_04810 PF00884 Sulfatase CUC06_04820 PF02915 Rubrerythrin CUC06_04830 PF05343 M42 glutamyl aminopeptidase CUC06_04835 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC06_04835 PF02838 Glycosyl hydrolase family 20, domain 2 CUC06_04835 PF07691 PA14 domain CUC06_04845 PF00245 Alkaline phosphatase CUC06_04850 PF01741 Large-conductance mechanosensitive channel, MscL CUC06_04855 PF00202 Aminotransferase class-III CUC06_04865 PF01132 Elongation factor P (EF-P) OB domain CUC06_04865 PF08207 Elongation factor P (EF-P) KOW-like domain CUC06_04865 PF09285 Elongation factor P, C-terminal CUC06_04875 PF00403 Heavy-metal-associated domain CUC06_04880 PF02463 RecF/RecN/SMC N terminal domain CUC06_04885 PF03099 Biotin/lipoate A/B protein ligase family CUC06_04885 PF12706 Beta-lactamase superfamily domain CUC06_04890 PF03808 Glycosyl transferase WecB/TagA/CpsF family CUC06_04920 PF00364 Biotin-requiring enzyme CUC06_04920 PF02817 e3 binding domain CUC06_04920 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CUC06_04925 PF02780 Transketolase, C-terminal domain CUC06_04925 PF02779 Transketolase, pyrimidine binding domain CUC06_04930 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CUC06_04930 PF02780 Transketolase, C-terminal domain CUC06_04930 PF02779 Transketolase, pyrimidine binding domain CUC06_04945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC06_04945 PF00529 HlyD membrane-fusion protein of T1SS CUC06_04950 PF00873 AcrB/AcrD/AcrF family CUC06_04955 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CUC06_04955 PF07548 Chlamydia polymorphic membrane protein middle domain CUC06_04955 PF03797 Autotransporter beta-domain CUC06_04985 PF01751 Toprim domain CUC06_04985 PF01131 DNA topoisomerase CUC06_05005 PF01510 N-acetylmuramoyl-L-alanine amidase CUC06_05005 PF01476 LysM domain CUC06_05005 PF01471 Putative peptidoglycan binding domain CUC06_05010 PF00330 Aconitase family (aconitate hydratase) CUC06_05010 PF00694 Aconitase C-terminal domain CUC06_05025 PF01641 SelR domain CUC06_05025 PF01625 Peptide methionine sulfoxide reductase CUC06_05040 PF01139 tRNA-splicing ligase RtcB CUC06_05050 PF07690 Major Facilitator Superfamily CUC06_05060 PF01923 Cobalamin adenosyltransferase CUC06_05070 PF00773 RNB domain CUC06_05070 PF17876 Cold shock domain CUC06_05070 PF08206 Ribonuclease B OB domain CUC06_05070 PF00575 S1 RNA binding domain CUC06_05095 PF12392 Collagenase CUC06_05095 PF01136 Peptidase family U32 CUC06_05100 PF02875 Mur ligase family, glutamate ligase domain CUC06_05100 PF08245 Mur ligase middle domain CUC06_05115 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CUC06_05120 PF12419 SNF2 Helicase protein CUC06_05120 PF00271 Helicase conserved C-terminal domain CUC06_05120 PF00176 SNF2 family N-terminal domain CUC06_05125 PF02872 5'-nucleotidase, C-terminal domain CUC06_05125 PF00149 Calcineurin-like phosphoesterase CUC06_05130 PF03330 Lytic transglycolase CUC06_05130 PF05036 Sporulation related domain CUC06_05135 PF01513 ATP-NAD kinase CUC06_05140 PF00467 KOW motif CUC06_05140 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CUC06_05145 PF00673 ribosomal L5P family C-terminus CUC06_05145 PF00281 Ribosomal protein L5 CUC06_05150 PF00410 Ribosomal protein S8 CUC06_05155 PF00347 Ribosomal protein L6 CUC06_05160 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CUC06_05165 PF03719 Ribosomal protein S5, C-terminal domain CUC06_05165 PF00333 Ribosomal protein S5, N-terminal domain CUC06_05170 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CUC06_05180 PF05191 Adenylate kinase, active site lid CUC06_05185 PF00557 Metallopeptidase family M24 CUC06_05200 PF17941 Polyphosphate kinase C-terminal domain 1 CUC06_05200 PF13090 Polyphosphate kinase C-terminal domain 2 CUC06_05200 PF13089 Polyphosphate kinase N-terminal domain CUC06_05200 PF02503 Polyphosphate kinase middle domain CUC06_05205 PF01501 Glycosyl transferase family 8 CUC06_05215 PF00535 Glycosyl transferase family 2 CUC06_05220 PF01531 Glycosyl transferase family 11 CUC06_05225 PF00535 Glycosyl transferase family 2 CUC06_05240 PF00535 Glycosyl transferase family 2 CUC06_05245 PF01965 DJ-1/PfpI family CUC06_05250 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CUC06_05250 PF02817 e3 binding domain CUC06_05250 PF00364 Biotin-requiring enzyme CUC06_05260 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CUC06_05275 PF02554 Carbon starvation protein CstA CUC06_05285 PF00884 Sulfatase CUC06_05290 PF02033 Ribosome-binding factor A CUC06_05295 PF04760 Translation initiation factor IF-2, N-terminal region CUC06_05295 PF11987 Translation-initiation factor 2 CUC06_05295 PF00009 Elongation factor Tu GTP binding domain CUC06_05300 PF00575 S1 RNA binding domain CUC06_05300 PF08529 NusA N-terminal domain CUC06_05300 PF13184 NusA-like KH domain CUC06_05305 PF03372 Endonuclease/Exonuclease/phosphatase family CUC06_05310 PF01725 Ham1 family CUC06_05315 PF06962 Putative rRNA methylase CUC06_05320 PF04015 Domain of unknown function (DUF362) CUC06_05330 PF01061 ABC-2 type transporter CUC06_05330 PF00498 FHA domain CUC06_05330 PF00005 ABC transporter CUC06_05350 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CUC06_05355 PF02397 Bacterial sugar transferase CUC06_05360 PF08544 GHMP kinases C terminal CUC06_05360 PF10509 Galactokinase galactose-binding signature CUC06_05360 PF00288 GHMP kinases N terminal domain CUC06_05365 PF00474 Sodium:solute symporter family CUC06_05370 PF00580 UvrD/REP helicase N-terminal domain CUC06_05370 PF13361 UvrD-like helicase C-terminal domain CUC06_05375 PF00551 Formyl transferase CUC06_05375 PF02911 Formyl transferase, C-terminal domain CUC06_05385 PF03309 Type III pantothenate kinase CUC06_05390 PF00550 Phosphopantetheine attachment site CUC06_05405 PF02580 D-Tyr-tRNA(Tyr) deacylase CUC06_05415 PF13085 2Fe-2S iron-sulfur cluster binding domain CUC06_05420 PF00890 FAD binding domain CUC06_05420 PF02910 Fumarate reductase flavoprotein C-term CUC06_05485 PF12848 ABC transporter CUC06_05485 PF16326 ABC transporter C-terminal domain CUC06_05485 PF00005 ABC transporter CUC06_05495 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CUC06_05495 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CUC06_05505 PF01595 Cyclin M transmembrane N-terminal domain CUC06_05505 PF03471 Transporter associated domain CUC06_05505 PF00571 CBS domain CUC06_05520 PF12146 Serine aminopeptidase, S33 CUC06_05530 PF00248 Aldo/keto reductase family CUC06_05540 PF13802 Galactose mutarotase-like CUC06_05540 PF17137 Domain of unknown function (DUF5110) CUC06_05540 PF16338 Domain of unknown function (DUF4968) CUC06_05540 PF01055 Glycosyl hydrolases family 31 CUC06_05550 PF04397 LytTr DNA-binding domain CUC06_05550 PF00072 Response regulator receiver domain CUC06_05585 PF00561 alpha/beta hydrolase fold CUC06_05590 PF01914 MarC family integral membrane protein CUC06_05620 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CUC06_05625 PF12848 ABC transporter CUC06_05625 PF16326 ABC transporter C-terminal domain CUC06_05625 PF00005 ABC transporter CUC06_05670 PF01555 DNA methylase CUC06_05695 PF09190 DALR domain CUC06_05695 PF01406 tRNA synthetases class I (C) catalytic domain CUC06_05700 PF02838 Glycosyl hydrolase family 20, domain 2 CUC06_05700 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC06_05705 PF00884 Sulfatase CUC06_05705 PF16347 Domain of unknown function (DUF4976) CUC06_05720 PF06421 GTP-binding protein LepA C-terminus CUC06_05720 PF00679 Elongation factor G C-terminus CUC06_05720 PF00009 Elongation factor Tu GTP binding domain CUC06_05720 PF03144 Elongation factor Tu domain 2 CUC06_05745 PF00623 RNA polymerase Rpb1, domain 2 CUC06_05745 PF04997 RNA polymerase Rpb1, domain 1 CUC06_05745 PF04998 RNA polymerase Rpb1, domain 5 CUC06_05745 PF05000 RNA polymerase Rpb1, domain 4 CUC06_05745 PF04983 RNA polymerase Rpb1, domain 3 CUC06_05750 PF04565 RNA polymerase Rpb2, domain 3 CUC06_05750 PF00562 RNA polymerase Rpb2, domain 6 CUC06_05750 PF04560 RNA polymerase Rpb2, domain 7 CUC06_05750 PF04561 RNA polymerase Rpb2, domain 2 CUC06_05750 PF04563 RNA polymerase beta subunit CUC06_05750 PF10385 RNA polymerase beta subunit external 1 domain CUC06_05755 PF00542 Ribosomal protein L7/L12 C-terminal domain CUC06_05755 PF16320 Ribosomal protein L7/L12 dimerisation domain CUC06_05760 PF00466 Ribosomal protein L10 CUC06_05765 PF00687 Ribosomal protein L1p/L10e family CUC06_05770 PF00298 Ribosomal protein L11, RNA binding domain CUC06_05770 PF03946 Ribosomal protein L11, N-terminal domain CUC06_05775 PF00467 KOW motif CUC06_05775 PF02357 Transcription termination factor nusG CUC06_05790 PF03144 Elongation factor Tu domain 2 CUC06_05790 PF00009 Elongation factor Tu GTP binding domain CUC06_05790 PF03143 Elongation factor Tu C-terminal domain CUC06_05800 PF00814 Glycoprotease family CUC06_05805 PF07724 AAA domain (Cdc48 subfamily) CUC06_05805 PF06689 ClpX C4-type zinc finger CUC06_05805 PF10431 C-terminal, D2-small domain, of ClpB protein CUC06_05810 PF00574 Clp protease CUC06_05815 PF05698 Bacterial trigger factor protein (TF) C-terminus CUC06_05815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CUC06_05815 PF05697 Bacterial trigger factor protein (TF) CUC06_05820 PF07244 Surface antigen variable number repeat CUC06_05820 PF01103 Surface antigen CUC06_05830 PF02219 Methylenetetrahydrofolate reductase CUC06_05850 PF00873 AcrB/AcrD/AcrF family CUC06_05895 PF13649 Methyltransferase domain CUC06_05900 PF02772 S-adenosylmethionine synthetase, central domain CUC06_05900 PF00438 S-adenosylmethionine synthetase, N-terminal domain CUC06_05900 PF02773 S-adenosylmethionine synthetase, C-terminal domain CUC06_05905 PF05221 S-adenosyl-L-homocysteine hydrolase CUC06_05905 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CUC06_05920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CUC06_05930 PF16347 Domain of unknown function (DUF4976) CUC06_05930 PF00884 Sulfatase CUC06_05935 PF16124 RecQ zinc-binding CUC06_05935 PF00570 HRDC domain CUC06_05935 PF09382 RQC domain CUC06_05935 PF00270 DEAD/DEAH box helicase CUC06_05935 PF00271 Helicase conserved C-terminal domain CUC06_05960 PF02910 Fumarate reductase flavoprotein C-term CUC06_05960 PF00890 FAD binding domain CUC06_05965 PF08032 RNA 2'-O ribose methyltransferase substrate binding CUC06_05965 PF00588 SpoU rRNA Methylase family CUC06_06015 PF02421 Ferrous iron transport protein B CUC06_06015 PF07664 Ferrous iron transport protein B C terminus CUC06_06015 PF17910 FeoB cytosolic helical domain CUC06_06015 PF07670 Nucleoside recognition CUC06_06030 PF00034 Cytochrome c CUC06_06030 PF03150 Di-haem cytochrome c peroxidase CUC06_06030 PF14376 Haem-binding domain CUC06_06035 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CUC06_06035 PF04055 Radical SAM superfamily CUC06_06040 PF14437 MafB19-like deaminase CUC06_06045 PF00480 ROK family CUC06_06050 PF00403 Heavy-metal-associated domain CUC06_06055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUC06_06055 PF07498 Rho termination factor, N-terminal domain CUC06_06055 PF07497 Rho termination factor, RNA-binding domain CUC06_06060 PF03958 Bacterial type II/III secretion system short domain CUC06_06060 PF00263 Bacterial type II and III secretion system protein CUC06_06085 PF05343 M42 glutamyl aminopeptidase CUC06_06090 PF01790 Prolipoprotein diacylglyceryl transferase CUC06_06100 PF00557 Metallopeptidase family M24 CUC06_06100 PF05195 Aminopeptidase P, N-terminal domain CUC06_06105 PF01634 ATP phosphoribosyltransferase CUC06_06105 PF08029 HisG, C-terminal domain CUC06_06125 PF00989 PAS fold CUC06_06125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC06_06125 PF11808 Phosphate regulon sensor protein PhoR CUC06_06125 PF00512 His Kinase A (phospho-acceptor) domain CUC06_06130 PF00072 Response regulator receiver domain CUC06_06130 PF00486 Transcriptional regulatory protein, C terminal CUC06_06135 PF00920 Dehydratase family CUC06_06220 PF00884 Sulfatase CUC06_06255 PF01370 NAD dependent epimerase/dehydratase family CUC06_06260 PF00398 Ribosomal RNA adenine dimethylase CUC06_06285 PF01554 MatE CUC06_06290 PF02386 Cation transport protein CUC06_06305 PF13539 D-alanyl-D-alanine carboxypeptidase CUC06_06430 PF03814 Potassium-transporting ATPase A subunit CUC06_06440 PF02669 K+-transporting ATPase, c chain CUC06_06445 PF02702 Osmosensitive K+ channel His kinase sensor domain CUC06_06445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC06_06445 PF13492 GAF domain CUC06_06445 PF13493 Domain of unknown function (DUF4118) CUC06_06445 PF00512 His Kinase A (phospho-acceptor) domain CUC06_06455 PF12867 DinB superfamily CUC06_06455 PF03781 Sulfatase-modifying factor enzyme 1 CUC06_06465 PF00753 Metallo-beta-lactamase superfamily CUC06_06465 PF16123 Hydroxyacylglutathione hydrolase C-terminus CUC06_06475 PF03793 PASTA domain CUC06_06475 PF00069 Protein kinase domain CUC06_06480 PF00248 Aldo/keto reductase family CUC06_06485 PF13411 MerR HTH family regulatory protein CUC06_06495 PF01212 Beta-eliminating lyase CUC06_06525 PF00005 ABC transporter CUC06_06535 PF17863 AAA lid domain CUC06_06535 PF07726 ATPase family associated with various cellular activities (AAA) CUC06_06540 PF04235 Protein of unknown function (DUF418) CUC06_06560 PF08338 Domain of unknown function (DUF1731) CUC06_06560 PF01370 NAD dependent epimerase/dehydratase family CUC06_06575 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CUC06_06575 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CUC06_06580 PF00005 ABC transporter CUC06_06585 PF00392 Bacterial regulatory proteins, gntR family CUC06_06585 PF07729 FCD domain CUC06_06600 PF00884 Sulfatase CUC06_06610 PF03952 Enolase, N-terminal domain CUC06_06610 PF00113 Enolase, C-terminal TIM barrel domain CUC06_06620 PF00155 Aminotransferase class I and II CUC06_06625 PF02424 ApbE family CUC06_06640 PF00830 Ribosomal L28 family CUC06_06655 PF03652 Holliday junction resolvase CUC06_06660 PF01050 Mannose-6-phosphate isomerase CUC06_06660 PF00483 Nucleotidyl transferase CUC06_06665 PF01255 Putative undecaprenyl diphosphate synthase CUC06_06670 PF01751 Toprim domain CUC06_06670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC06_06670 PF00986 DNA gyrase B subunit, carboxyl terminus CUC06_06670 PF00204 DNA gyrase B CUC06_06675 PF08544 GHMP kinases C terminal CUC06_06675 PF00288 GHMP kinases N terminal domain CUC06_06685 PF13307 Helicase C-terminal domain CUC06_06685 PF06733 DEAD_2 CUC06_06690 PF00005 ABC transporter CUC06_06715 PF00696 Amino acid kinase family CUC06_06720 PF01544 CorA-like Mg2+ transporter protein CUC06_06725 PF01281 Ribosomal protein L9, N-terminal domain CUC06_06725 PF03948 Ribosomal protein L9, C-terminal domain CUC06_06730 PF01808 AICARFT/IMPCHase bienzyme CUC06_06730 PF02142 MGS-like domain CUC06_06735 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CUC06_06740 PF01648 4'-phosphopantetheinyl transferase superfamily CUC06_06750 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CUC06_06750 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CUC06_06755 PF01510 N-acetylmuramoyl-L-alanine amidase CUC06_06755 PF01471 Putative peptidoglycan binding domain CUC06_06755 PF01476 LysM domain CUC06_06760 PF17191 RecG wedge domain CUC06_06760 PF00271 Helicase conserved C-terminal domain CUC06_06760 PF00270 DEAD/DEAH box helicase CUC06_06770 PF13247 4Fe-4S dicluster domain CUC06_06770 PF00037 4Fe-4S binding domain CUC06_06780 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CUC06_06790 PF01761 3-dehydroquinate synthase CUC06_06850 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CUC06_06860 PF01368 DHH family CUC06_06860 PF00571 CBS domain CUC06_06860 PF07085 DRTGG domain CUC06_06860 PF02833 DHHA2 domain CUC06_06870 PF02575 YbaB/EbfC DNA-binding family CUC06_06875 PF12169 DNA polymerase III subunits gamma and tau domain III CUC06_06895 PF04002 RadC-like JAB domain CUC06_06900 PF03853 YjeF-related protein N-terminus CUC06_06900 PF01256 Carbohydrate kinase CUC06_06905 PF01176 Translation initiation factor 1A / IF-1 CUC06_06910 PF00572 Ribosomal protein L13 CUC06_06915 PF00380 Ribosomal protein S9/S16 CUC06_06920 PF02590 Predicted SPOUT methyltransferase CUC06_06925 PF02151 UvrB/uvrC motif CUC06_06925 PF08459 UvrC Helix-hairpin-helix N-terminal CUC06_06925 PF01541 GIY-YIG catalytic domain CUC06_06930 PF01618 MotA/TolQ/ExbB proton channel family CUC06_06935 PF02472 Biopolymer transport protein ExbD/TolR CUC06_06945 PF00905 Penicillin binding protein transpeptidase domain CUC06_06945 PF00912 Transglycosylase CUC06_06945 PF17092 Penicillin-binding protein OB-like domain CUC06_06950 PF00459 Inositol monophosphatase family CUC06_06955 PF02542 YgbB family CUC06_06965 PF01238 Phosphomannose isomerase type I CUC06_06975 PF03553 Na+/H+ antiporter family CUC06_06980 PF01370 NAD dependent epimerase/dehydratase family CUC06_06985 PF16363 GDP-mannose 4,6 dehydratase CUC06_06990 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CUC06_06990 PF00117 Glutamine amidotransferase class-I CUC06_06995 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CUC06_06995 PF02142 MGS-like domain CUC06_06995 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUC06_07000 PF18318 Glutamine synthetase C-terminal domain CUC06_07000 PF12437 Glutamine synthetase type III N terminal CUC06_07000 PF00120 Glutamine synthetase, catalytic domain CUC06_07005 PF00310 Glutamine amidotransferases class-II CUC06_07005 PF01493 GXGXG motif CUC06_07005 PF01645 Conserved region in glutamate synthase CUC06_07005 PF04898 Glutamate synthase central domain CUC06_07010 PF02096 60Kd inner membrane protein CUC06_07010 PF14849 YidC periplasmic domain CUC06_07015 PF01809 Putative membrane protein insertion efficiency factor CUC06_07020 PF00825 Ribonuclease P CUC06_07025 PF00468 Ribosomal protein L34 CUC06_07030 PF18318 Glutamine synthetase C-terminal domain CUC06_07030 PF00120 Glutamine synthetase, catalytic domain CUC06_07030 PF12437 Glutamine synthetase type III N terminal CUC06_07045 PF13472 GDSL-like Lipase/Acylhydrolase family CUC06_07045 PF07859 alpha/beta hydrolase fold CUC06_07055 PF01263 Aldose 1-epimerase CUC06_07065 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CUC06_07065 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CUC06_07070 PF00348 Polyprenyl synthetase CUC06_07075 PF02774 Semialdehyde dehydrogenase, dimerisation domain CUC06_07075 PF01118 Semialdehyde dehydrogenase, NAD binding domain CUC06_07090 PF03313 Serine dehydratase alpha chain CUC06_07090 PF03315 Serine dehydratase beta chain CUC06_07095 PF00085 Thioredoxin CUC06_07095 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC06_07145 PF02254 TrkA-N domain CUC06_07145 PF00999 Sodium/hydrogen exchanger family CUC06_07150 PF00149 Calcineurin-like phosphoesterase CUC06_07155 PF02073 Thermophilic metalloprotease (M29) CUC06_07160 PF00551 Formyl transferase CUC06_07165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CUC06_07165 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CUC06_07185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC06_07185 PF01751 Toprim domain CUC06_07185 PF00204 DNA gyrase B CUC06_07185 PF00986 DNA gyrase B subunit, carboxyl terminus CUC06_07190 PF03989 DNA gyrase C-terminal domain, beta-propeller CUC06_07190 PF00521 DNA gyrase/topoisomerase IV, subunit A CUC06_07200 PF01136 Peptidase family U32 CUC06_07205 PF03781 Sulfatase-modifying factor enzyme 1 CUC06_07225 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CUC06_07225 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CUC06_07230 PF00528 Binding-protein-dependent transport system inner membrane component CUC06_07235 PF00005 ABC transporter CUC06_07245 PF00009 Elongation factor Tu GTP binding domain CUC06_07250 PF01507 Phosphoadenosine phosphosulfate reductase family CUC06_07255 PF01507 Phosphoadenosine phosphosulfate reductase family CUC06_07260 PF00291 Pyridoxal-phosphate dependent enzyme CUC06_07270 PF01895 PhoU domain CUC06_07275 PF00005 ABC transporter CUC06_07280 PF00528 Binding-protein-dependent transport system inner membrane component CUC06_07285 PF00528 Binding-protein-dependent transport system inner membrane component CUC06_07290 PF12849 PBP superfamily domain CUC06_07295 PF00005 ABC transporter CUC06_07305 PF01263 Aldose 1-epimerase CUC06_07320 PF05193 Peptidase M16 inactive domain CUC06_07320 PF00675 Insulinase (Peptidase family M16) CUC06_07325 PF12833 Helix-turn-helix domain CUC06_07325 PF02311 AraC-like ligand binding domain CUC06_07335 PF12464 Maltose acetyltransferase CUC06_07335 PF00132 Bacterial transferase hexapeptide (six repeats) CUC06_07335 PF14602 Hexapeptide repeat of succinyl-transferase CUC06_07370 PF01765 Ribosome recycling factor CUC06_07375 PF00696 Amino acid kinase family CUC06_07380 PF00924 Mechanosensitive ion channel CUC06_07380 PF05552 Conserved TM helix CUC06_07385 PF10417 C-terminal domain of 1-Cys peroxiredoxin CUC06_07385 PF00578 AhpC/TSA family CUC06_07390 PF00209 Sodium:neurotransmitter symporter family CUC06_07415 PF02801 Beta-ketoacyl synthase, C-terminal domain CUC06_07415 PF00109 Beta-ketoacyl synthase, N-terminal domain CUC06_07420 PF01641 SelR domain CUC06_07425 PF11799 impB/mucB/samB family C-terminal domain CUC06_07425 PF00817 impB/mucB/samB family CUC06_07460 PF00005 ABC transporter CUC06_07465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC06_07470 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CUC06_07470 PF01411 tRNA synthetases class II (A) CUC06_07470 PF02272 DHHA1 domain CUC06_07475 PF01066 CDP-alcohol phosphatidyltransferase CUC06_07485 PF00809 Pterin binding enzyme CUC06_07495 PF04551 GcpE protein CUC06_07515 PF00109 Beta-ketoacyl synthase, N-terminal domain CUC06_07515 PF02801 Beta-ketoacyl synthase, C-terminal domain CUC06_07520 PF00155 Aminotransferase class I and II CUC06_07545 PF02938 GAD domain CUC06_07545 PF00152 tRNA synthetases class II (D, K and N) CUC06_07545 PF01336 OB-fold nucleic acid binding domain CUC06_07550 PF13393 Histidyl-tRNA synthetase CUC06_07550 PF03129 Anticodon binding domain CUC06_07560 PF02492 CobW/HypB/UreG, nucleotide-binding domain CUC06_07565 PF07503 HypF finger CUC06_07565 PF01300 Telomere recombination CUC06_07565 PF17788 HypF Kae1-like domain CUC06_07565 PF00708 Acylphosphatase CUC06_07570 PF01455 HupF/HypC family CUC06_07575 PF01924 Hydrogenase formation hypA family CUC06_07580 PF00586 AIR synthase related protein, N-terminal domain CUC06_07580 PF02769 AIR synthase related protein, C-terminal domain CUC06_07600 PF00012 Hsp70 protein CUC06_07605 PF00166 Chaperonin 10 Kd subunit CUC06_07610 PF00118 TCP-1/cpn60 chaperonin family CUC06_07645 PF13614 AAA domain CUC06_07645 PF13807 G-rich domain on putative tyrosine kinase CUC06_07645 PF02706 Chain length determinant protein CUC06_07660 PF07499 RuvA, C-terminal domain CUC06_07660 PF01330 RuvA N terminal domain CUC06_07665 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CUC06_07665 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CUC06_07670 PF00162 Phosphoglycerate kinase CUC06_07680 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation CUC06_07680 PF14508 Glycosyl-hydrolase 97 N-terminal CUC06_07680 PF10566 Glycoside hydrolase 97 CUC06_07690 PF01555 DNA methylase CUC06_07700 PF03461 TRCF domain CUC06_07700 PF00270 DEAD/DEAH box helicase CUC06_07700 PF02559 CarD-like/TRCF domain CUC06_07700 PF00271 Helicase conserved C-terminal domain CUC06_07700 PF17757 UvrB interaction domain CUC06_07710 PF07690 Major Facilitator Superfamily CUC06_07725 PF02811 PHP domain CUC06_07730 PF01515 Phosphate acetyl/butaryl transferase CUC06_07730 PF07085 DRTGG domain CUC06_07735 PF01171 PP-loop family CUC06_07735 PF11734 TilS substrate C-terminal domain CUC06_07740 PF01197 Ribosomal protein L31 CUC06_07775 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CUC06_07775 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CUC06_07775 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CUC06_07780 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CUC06_07780 PF00056 lactate/malate dehydrogenase, NAD binding domain CUC06_07805 PF00881 Nitroreductase family CUC06_07810 PF00849 RNA pseudouridylate synthase CUC06_07810 PF01479 S4 domain CUC06_07815 PF00849 RNA pseudouridylate synthase CUC06_07815 PF01479 S4 domain CUC06_07835 PF00005 ABC transporter CUC06_07840 PF00528 Binding-protein-dependent transport system inner membrane component CUC06_07850 PF01118 Semialdehyde dehydrogenase, NAD binding domain CUC06_07850 PF02774 Semialdehyde dehydrogenase, dimerisation domain CUC06_07855 PF01960 ArgJ family CUC06_07875 PF17760 UvrA interaction domain CUC06_07875 PF17755 UvrA DNA-binding domain CUC06_07905 PF02594 Uncharacterised ACR, YggU family COG1872 CUC06_07910 PF01025 GrpE CUC06_07915 PF01556 DnaJ C terminal domain CUC06_07915 PF00226 DnaJ domain CUC06_07915 PF00684 DnaJ central domain CUC06_07920 PF04452 RNA methyltransferase CUC06_07930 PF13229 Right handed beta helix region CUC06_07940 PF10502 Signal peptidase, peptidase S26 CUC06_07945 PF02913 FAD linked oxidases, C-terminal domain CUC06_07945 PF01565 FAD binding domain CUC06_07970 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CUC06_07970 PF14572 Phosphoribosyl synthetase-associated domain CUC06_07975 PF01386 Ribosomal L25p family CUC06_07975 PF14693 Ribosomal protein TL5, C-terminal domain CUC06_07985 PF00475 Imidazoleglycerol-phosphate dehydratase CUC06_07990 PF00117 Glutamine amidotransferase class-I CUC06_07995 PF01250 Ribosomal protein S6 CUC06_08000 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CUC06_08015 PF07943 Penicillin-binding protein 5, C-terminal domain CUC06_08015 PF00768 D-alanyl-D-alanine carboxypeptidase CUC06_08020 PF00365 Phosphofructokinase CUC06_08030 PF02535 ZIP Zinc transporter CUC06_08050 PF00155 Aminotransferase class I and II CUC06_08055 PF08340 Domain of unknown function (DUF1732) CUC06_08055 PF03755 YicC-like family, N-terminal region CUC06_08060 PF00625 Guanylate kinase CUC06_08065 PF03600 Citrate transporter CUC06_08065 PF02080 TrkA-C domain CUC06_08070 PF00749 tRNA synthetases class I (E and Q), catalytic domain CUC06_08085 PF01040 UbiA prenyltransferase family CUC06_08120 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain CUC06_08120 PF01522 Polysaccharide deacetylase CUC06_08125 PF07549 SecD/SecF GG Motif CUC06_08125 PF02355 Protein export membrane protein CUC06_08140 PF06750 Bacterial Peptidase A24 N-terminal domain CUC06_08140 PF01478 Type IV leader peptidase family CUC06_08150 PF01000 RNA polymerase Rpb3/RpoA insert domain CUC06_08150 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CUC06_08150 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CUC06_08155 PF01196 Ribosomal protein L17 CUC06_08160 PF00698 Acyl transferase domain CUC06_08175 PF13419 Haloacid dehalogenase-like hydrolase CUC06_08190 PF00691 OmpA family CUC06_08250 PF00248 Aldo/keto reductase family CUC06_08255 PF03030 Inorganic H+ pyrophosphatase CUC06_08270 PF04715 Anthranilate synthase component I, N terminal region CUC06_08270 PF00425 chorismate binding enzyme CUC06_08275 PF02885 Glycosyl transferase family, helical bundle domain CUC06_08275 PF00591 Glycosyl transferase family, a/b domain CUC06_08280 PF00218 Indole-3-glycerol phosphate synthase CUC06_08285 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CUC06_08290 PF00291 Pyridoxal-phosphate dependent enzyme CUC06_08295 PF00290 Tryptophan synthase alpha chain CUC06_08305 PF12951 Passenger-associated-transport-repeat CUC06_08315 PF00561 alpha/beta hydrolase fold CUC06_08320 PF00444 Ribosomal protein L36 CUC06_08330 PF04055 Radical SAM superfamily CUC06_08335 PF02901 Pyruvate formate lyase-like CUC06_08335 PF01228 Glycine radical CUC06_08375 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CUC06_08380 PF07690 Major Facilitator Superfamily CUC06_08395 PF12344 Ultra-violet resistance protein B CUC06_08395 PF02151 UvrB/uvrC motif CUC06_08395 PF04851 Type III restriction enzyme, res subunit CUC06_08395 PF00271 Helicase conserved C-terminal domain CUC06_08395 PF17757 UvrB interaction domain CUC06_08400 PF01632 Ribosomal protein L35 CUC06_08405 PF00453 Ribosomal protein L20 CUC06_08410 PF02163 Peptidase family M50 CUC06_08410 PF17820 PDZ domain CUC06_08425 PF12705 PD-(D/E)XK nuclease superfamily CUC06_08425 PF00580 UvrD/REP helicase N-terminal domain CUC06_08425 PF13361 UvrD-like helicase C-terminal domain CUC06_08435 PF00892 EamA-like transporter family CUC06_08440 PF07678 A-macroglobulin TED domain CUC06_08440 PF01835 MG2 domain CUC06_08440 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CUC06_08440 PF07703 Alpha-2-macroglobulin bait region domain CUC06_08440 PF00207 Alpha-2-macroglobulin family CUC06_08445 PF00465 Iron-containing alcohol dehydrogenase CUC06_08455 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CUC06_08455 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CUC06_08480 PF00285 Citrate synthase, C-terminal domain CUC06_08490 PF00588 SpoU rRNA Methylase family CUC06_08500 PF01668 SmpB protein CUC06_08510 PF00849 RNA pseudouridylate synthase CUC06_08520 PF00334 Nucleoside diphosphate kinase CUC06_08525 PF00535 Glycosyl transferase family 2 CUC06_08530 PF00535 Glycosyl transferase family 2 CUC06_08540 PF00482 Type II secretion system (T2SS), protein F CUC06_08545 PF00437 Type II/IV secretion system protein CUC06_08550 PF00437 Type II/IV secretion system protein CUC06_08555 PF01207 Dihydrouridine synthase (Dus) CUC06_08565 PF00155 Aminotransferase class I and II CUC06_08570 PF03023 Lipid II flippase MurJ CUC06_08575 PF01467 Cytidylyltransferase-like CUC06_08575 PF00294 pfkB family carbohydrate kinase CUC06_08580 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CUC06_08580 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CUC06_08585 PF02638 Glycosyl hydrolase-like 10 CUC06_08590 PF00731 AIR carboxylase CUC06_08595 PF02540 NAD synthase CUC06_08600 PF01969 Protein of unknown function DUF111 CUC06_08605 PF00348 Polyprenyl synthetase CUC06_08610 PF00854 POT family CUC06_08620 PF01883 Iron-sulfur cluster assembly protein CUC06_08635 PF00361 Proton-conducting membrane transporter CUC06_08640 PF00361 Proton-conducting membrane transporter CUC06_08645 PF00361 Proton-conducting membrane transporter CUC06_08645 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CUC06_08650 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CUC06_08655 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CUC06_08665 PF00146 NADH dehydrogenase CUC06_08670 PF01568 Molydopterin dinucleotide binding domain CUC06_08670 PF00384 Molybdopterin oxidoreductase CUC06_08670 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CUC06_08670 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CUC06_08675 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CUC06_08675 PF10531 SLBB domain CUC06_08675 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CUC06_08685 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CUC06_08695 PF01522 Polysaccharide deacetylase CUC06_08705 PF00677 Lumazine binding domain CUC06_08730 PF03797 Autotransporter beta-domain CUC06_08730 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CUC06_08730 PF07548 Chlamydia polymorphic membrane protein middle domain CUC06_08735 PF02446 4-alpha-glucanotransferase CUC06_08745 PF04055 Radical SAM superfamily CUC06_08745 PF00919 Uncharacterized protein family UPF0004 CUC06_08745 PF18693 TRAM domain CUC06_08750 PF01972 Serine dehydrogenase proteinase CUC06_08750 PF01957 NfeD-like C-terminal, partner-binding CUC06_08755 PF08275 DNA primase catalytic core, N-terminal domain CUC06_08755 PF10410 DnaB-helicase binding domain of primase CUC06_08755 PF01807 CHC2 zinc finger CUC06_08760 PF04542 Sigma-70 region 2 CUC06_08760 PF00140 Sigma-70 factor, region 1.2 CUC06_08760 PF03979 Sigma-70 factor, region 1.1 CUC06_08760 PF04539 Sigma-70 region 3 CUC06_08760 PF04545 Sigma-70, region 4 CUC06_08765 PF01427 D-ala-D-ala dipeptidase CUC06_08780 PF00464 Serine hydroxymethyltransferase CUC06_08785 PF17804 Tail specific protease N-terminal domain CUC06_08785 PF03572 Peptidase family S41 CUC06_08785 PF00595 PDZ domain CUC06_08785 PF11818 C-terminal domain of tail specific protease (DUF3340) CUC06_08810 PF04408 Helicase associated domain (HA2) CUC06_08810 PF00271 Helicase conserved C-terminal domain CUC06_08810 PF08482 ATP-dependent helicase C-terminal CUC06_08810 PF00270 DEAD/DEAH box helicase CUC06_08825 PF12627 Probable RNA and SrmB- binding site of polymerase A CUC06_08825 PF01743 Poly A polymerase head domain CUC06_08825 PF13735 tRNA nucleotidyltransferase domain 2 putative CUC06_08835 PF03958 Bacterial type II/III secretion system short domain CUC06_08835 PF00263 Bacterial type II and III secretion system protein CUC06_08850 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CUC06_08850 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CUC06_08870 PF01207 Dihydrouridine synthase (Dus) CUC06_08875 PF02401 LytB protein CUC06_08885 PF01649 Ribosomal protein S20 CUC06_08890 PF13419 Haloacid dehalogenase-like hydrolase CUC06_08895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CUC06_08895 PF00205 Thiamine pyrophosphate enzyme, central domain CUC06_08895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUC06_08905 PF02666 Phosphatidylserine decarboxylase CUC06_08910 PF00834 Ribulose-phosphate 3 epimerase family CUC06_08915 PF08264 Anticodon-binding domain of tRNA CUC06_08915 PF00133 tRNA synthetases class I (I, L, M and V) CUC06_08915 PF13603 Leucyl-tRNA synthetase, Domain 2 CUC06_08915 PF09334 tRNA synthetases class I (M) CUC06_08920 PF00884 Sulfatase CUC06_08930 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CUC06_08935 PF17810 Arginine decarboxylase helical bundle domain CUC06_08935 PF17944 Arginine decarboxylase C-terminal helical extension CUC06_08935 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CUC06_08950 PF02929 Beta galactosidase small chain CUC06_08950 PF16353 Domain of unknown function(DUF4981) CUC06_08950 PF02837 Glycosyl hydrolases family 2, sugar binding domain CUC06_08950 PF00703 Glycosyl hydrolases family 2 CUC06_08950 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CUC06_08955 PF02837 Glycosyl hydrolases family 2, sugar binding domain CUC06_08955 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CUC06_08955 PF00703 Glycosyl hydrolases family 2 CUC06_08960 PF16193 AAA C-terminal domain CUC06_08960 PF12002 MgsA AAA+ ATPase C terminal CUC06_08960 PF00004 ATPase family associated with various cellular activities (AAA) CUC06_08965 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC06_08965 PF07691 PA14 domain CUC06_08965 PF02838 Glycosyl hydrolase family 20, domain 2 CUC06_08980 PF00365 Phosphofructokinase CUC06_08995 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CUC06_08995 PF04055 Radical SAM superfamily CUC06_08995 PF13186 Iron-sulfur cluster-binding domain CUC06_09030 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CUC06_09040 PF02654 Cobalamin-5-phosphate synthase CUC06_09045 PF02277 Phosphoribosyltransferase CUC06_09050 PF03186 CobD/Cbib protein CUC06_09055 PF07685 CobB/CobQ-like glutamine amidotransferase domain CUC06_09055 PF00155 Aminotransferase class I and II CUC06_09055 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CUC06_09065 PF07715 TonB-dependent Receptor Plug Domain CUC06_09065 PF00593 TonB dependent receptor CUC06_09075 PF01301 Glycosyl hydrolases family 35 CUC06_09085 PF01979 Amidohydrolase family CUC06_09090 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC06_09090 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CUC06_09100 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CUC06_09100 PF00364 Biotin-requiring enzyme CUC06_09100 PF02817 e3 binding domain CUC06_09105 PF00676 Dehydrogenase E1 component CUC06_09105 PF02779 Transketolase, pyrimidine binding domain CUC06_09105 PF16078 2-oxoglutarate dehydrogenase N-terminus CUC06_09105 PF16870 2-oxoglutarate dehydrogenase C-terminal CUC06_09110 PF02322 Cytochrome bd terminal oxidase subunit II CUC06_09115 PF01654 Cytochrome bd terminal oxidase subunit I CUC06_09125 PF01451 Low molecular weight phosphotyrosine protein phosphatase CUC06_09140 PF00291 Pyridoxal-phosphate dependent enzyme CUC06_09145 PF01047 MarR family CUC06_09155 PF00210 Ferritin-like domain CUC06_09175 PF02698 DUF218 domain CUC06_09205 PF00570 HRDC domain CUC06_09205 PF09382 RQC domain CUC06_09205 PF16124 RecQ zinc-binding CUC06_09205 PF00271 Helicase conserved C-terminal domain CUC06_09205 PF00270 DEAD/DEAH box helicase CUC06_09220 PF02629 CoA binding domain CUC06_09220 PF00549 CoA-ligase CUC06_09225 PF00549 CoA-ligase CUC06_09225 PF08442 ATP-grasp domain CUC06_09265 PF02601 Exonuclease VII, large subunit CUC06_09265 PF13742 OB-fold nucleic acid binding domain CUC06_09270 PF01553 Acyltransferase CUC06_09270 PF00501 AMP-binding enzyme CUC06_09295 PF01370 NAD dependent epimerase/dehydratase family CUC06_09300 PF00512 His Kinase A (phospho-acceptor) domain CUC06_09300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC06_09300 PF00672 HAMP domain CUC06_09305 PF00072 Response regulator receiver domain CUC06_09305 PF00486 Transcriptional regulatory protein, C terminal CUC06_09315 PF00490 Delta-aminolevulinic acid dehydratase CUC06_09330 PF03129 Anticodon binding domain CUC06_09330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CUC06_09330 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUC06_09330 PF02824 TGS domain CUC06_09335 PF05198 Translation initiation factor IF-3, N-terminal domain CUC06_09335 PF00707 Translation initiation factor IF-3, C-terminal domain CUC06_09340 PF08463 EcoEI R protein C-terminal CUC06_09340 PF00271 Helicase conserved C-terminal domain CUC06_09340 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) CUC06_09340 PF04851 Type III restriction enzyme, res subunit CUC06_09345 PF02384 N-6 DNA Methylase CUC06_09345 PF12161 HsdM N-terminal domain CUC06_09350 PF01420 Type I restriction modification DNA specificity domain CUC06_09360 PF02899 Phage integrase, N-terminal SAM-like domain CUC06_09360 PF00589 Phage integrase family CUC06_09365 PF01420 Type I restriction modification DNA specificity domain CUC06_09370 PF04235 Protein of unknown function (DUF418) CUC06_09370 PF07786 Protein of unknown function (DUF1624) CUC06_09375 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CUC06_09375 PF13288 DXP reductoisomerase C-terminal domain CUC06_09375 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CUC06_09380 PF01467 Cytidylyltransferase-like CUC06_09415 PF04991 LicD family CUC06_09420 PF01467 Cytidylyltransferase-like CUC06_09430 PF00155 Aminotransferase class I and II CUC06_09435 PF04991 LicD family CUC06_09440 PF00128 Alpha amylase, catalytic domain CUC06_09440 PF02806 Alpha amylase, C-terminal all-beta domain CUC06_09440 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CUC06_09450 PF02657 Fe-S metabolism associated domain CUC06_09455 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CUC06_09455 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CUC06_09460 PF00884 Sulfatase CUC06_09465 PF00391 PEP-utilising enzyme, mobile domain CUC06_09465 PF02896 PEP-utilising enzyme, TIM barrel domain CUC06_09465 PF05524 PEP-utilising enzyme, N-terminal CUC06_09470 PF00381 PTS HPr component phosphorylation site CUC06_09475 PF02603 HPr Serine kinase N terminus CUC06_09475 PF07475 HPr Serine kinase C-terminal domain CUC06_09480 PF01546 Peptidase family M20/M25/M40 CUC06_09480 PF07687 Peptidase dimerisation domain CUC06_09485 PF00005 ABC transporter CUC06_09500 PF01168 Alanine racemase, N-terminal domain CUC06_09525 PF04379 ApaG domain CUC06_09530 PF12102 Domain of unknown function (DUF3578) CUC06_09530 PF07728 AAA domain (dynein-related subfamily) CUC06_09530 PF12102 Domain of unknown function (DUF3578) CUC06_09530 PF07728 AAA domain (dynein-related subfamily) CUC06_09540 PF04434 SWIM zinc finger CUC06_09540 PF00176 SNF2 family N-terminal domain CUC06_09540 PF00271 Helicase conserved C-terminal domain CUC06_09545 PF01037 Lrp/AsnC ligand binding domain CUC06_09550 PF00155 Aminotransferase class I and II CUC06_09565 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUC06_09565 PF03129 Anticodon binding domain CUC06_09570 PF00248 Aldo/keto reductase family CUC06_09595 PF13519 von Willebrand factor type A domain CUC06_09610 PF17863 AAA lid domain CUC06_09610 PF07726 ATPase family associated with various cellular activities (AAA) CUC06_09615 PF01425 Amidase CUC06_09620 PF02686 Glu-tRNAGln amidotransferase C subunit CUC06_09660 PF13180 PDZ domain CUC06_09665 PF13180 PDZ domain CUC06_09675 PF01757 Acyltransferase family CUC06_09705 PF00155 Aminotransferase class I and II CUC06_09715 PF00248 Aldo/keto reductase family CUC06_09720 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CUC06_09725 PF00248 Aldo/keto reductase family CUC06_09730 PF00149 Calcineurin-like phosphoesterase CUC06_09750 PF02525 Flavodoxin-like fold CUC06_09755 PF13411 MerR HTH family regulatory protein CUC06_09765 PF09154 Domain of unknown function (DUF1939) CUC06_09765 PF00128 Alpha amylase, catalytic domain CUC06_09775 PF01554 MatE CUC06_09785 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC06_09785 PF02838 Glycosyl hydrolase family 20, domain 2 CUC06_09800 PF04321 RmlD substrate binding domain CUC06_09805 PF10672 S-adenosylmethionine-dependent methyltransferase CUC06_09805 PF17785 PUA-like domain CUC06_09825 PF17785 PUA-like domain CUC06_09825 PF10672 S-adenosylmethionine-dependent methyltransferase CUC06_09830 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CUC06_09830 PF02585 GlcNAc-PI de-N-acetylase CUC06_09845 PF01479 S4 domain CUC06_09845 PF01728 FtsJ-like methyltransferase CUC06_09855 PF02678 Pirin CUC06_09855 PF17954 Quercetinase C-terminal cupin domain CUC06_09870 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CUC06_09870 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CUC06_09880 PF02952 L-fucose isomerase, C-terminal domain CUC06_09880 PF07882 L-fucose isomerase, second N-terminal domain CUC06_09880 PF07881 L-fucose isomerase, first N-terminal domain CUC06_09885 PF07690 Major Facilitator Superfamily CUC06_09895 PF13859 BNR repeat-like domain CUC06_09895 PF14873 N-terminal domain of BNR-repeat neuraminidase CUC06_09900 PF04542 Sigma-70 region 2 CUC06_09900 PF08281 Sigma-70, region 4 CUC06_09915 PF02583 Metal-sensitive transcriptional repressor CUC06_09920 PF00403 Heavy-metal-associated domain CUC06_09925 PF01964 Radical SAM ThiC family CUC06_09925 PF13667 ThiC-associated domain CUC06_09945 PF13180 PDZ domain CUC06_09945 PF17820 PDZ domain CUC06_09950 PF13286 Phosphohydrolase-associated domain CUC06_09950 PF01966 HD domain CUC06_09955 PF00892 EamA-like transporter family CUC06_09970 PF00842 Alanine racemase, C-terminal domain CUC06_09970 PF01168 Alanine racemase, N-terminal domain CUC06_09975 PF00005 ABC transporter CUC06_09975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC06_09980 PF00005 ABC transporter CUC06_09980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC06_09985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC06_09990 PF00528 Binding-protein-dependent transport system inner membrane component CUC06_09990 PF12911 N-terminal TM domain of oligopeptide transport permease C CUC06_09995 PF00528 Binding-protein-dependent transport system inner membrane component CUC06_10010 PF08546 Ketopantoate reductase PanE/ApbA C terminal CUC06_10010 PF02558 Ketopantoate reductase PanE/ApbA CUC06_10015 PF01268 Formate--tetrahydrofolate ligase CUC06_10020 PF06940 Domain of unknown function (DUF1287) CUC06_10025 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CUC06_10025 PF02844 Phosphoribosylglycinamide synthetase, N domain CUC06_10025 PF02843 Phosphoribosylglycinamide synthetase, C domain CUC06_10030 PF00436 Single-strand binding protein family CUC06_10040 PF01618 MotA/TolQ/ExbB proton channel family CUC06_10050 PF01327 Polypeptide deformylase CUC06_10060 PF00534 Glycosyl transferases group 1 CUC06_10060 PF13439 Glycosyltransferase Family 4 CUC06_10065 PF01055 Glycosyl hydrolases family 31 CUC06_10065 PF13802 Galactose mutarotase-like CUC06_10065 PF17137 Domain of unknown function (DUF5110) CUC06_10065 PF16338 Domain of unknown function (DUF4968) CUC06_10100 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CUC06_10110 PF01757 Acyltransferase family CUC06_10115 PF00180 Isocitrate/isopropylmalate dehydrogenase CUC06_10130 PF00753 Metallo-beta-lactamase superfamily CUC06_10130 PF10996 Beta-Casp domain CUC06_10130 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CUC06_10135 PF02223 Thymidylate kinase CUC06_10140 PF06508 Queuosine biosynthesis protein QueC CUC06_10145 PF14489 QueF-like protein CUC06_10150 PF00924 Mechanosensitive ion channel CUC06_10155 PF00749 tRNA synthetases class I (E and Q), catalytic domain CUC06_10160 PF00902 Sec-independent protein translocase protein (TatC) CUC06_10165 PF02673 Bacitracin resistance protein BacA CUC06_10185 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CUC06_10195 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CUC06_10200 PF00216 Bacterial DNA-binding protein CUC06_10205 PF01264 Chorismate synthase CUC06_10215 PF00175 Oxidoreductase NAD-binding domain CUC06_10215 PF00258 Flavodoxin CUC06_10215 PF00667 FAD binding domain CUC06_10225 PF00149 Calcineurin-like phosphoesterase CUC06_10245 PF02086 D12 class N6 adenine-specific DNA methyltransferase CUC06_10250 PF02899 Phage integrase, N-terminal SAM-like domain CUC06_10250 PF00589 Phage integrase family CUC06_10270 PF00465 Iron-containing alcohol dehydrogenase CUC06_10275 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CUC06_10290 PF07977 FabA-like domain CUC06_10290 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CUC06_10295 PF00483 Nucleotidyl transferase CUC06_10305 PF00795 Carbon-nitrogen hydrolase CUC06_10320 PF02838 Glycosyl hydrolase family 20, domain 2 CUC06_10320 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC06_10320 PF03173 Putative carbohydrate binding domain CUC06_10320 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CUC06_10335 PF01578 Cytochrome C assembly protein CUC06_10345 PF01497 Periplasmic binding protein CUC06_10350 PF00005 ABC transporter CUC06_10355 PF01032 FecCD transport family CUC06_10360 PF01032 FecCD transport family CUC06_10395 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CUC06_10395 PF01367 5'-3' exonuclease, C-terminal SAM fold CUC06_10395 PF01612 3'-5' exonuclease CUC06_10395 PF00476 DNA polymerase family A CUC06_10410 PF00206 Lyase CUC06_10410 PF10397 Adenylosuccinate lyase C-terminus CUC06_10415 PF01546 Peptidase family M20/M25/M40 CUC06_10415 PF07687 Peptidase dimerisation domain CUC06_10435 PF00701 Dihydrodipicolinate synthetase family CUC06_10450 PF00425 chorismate binding enzyme CUC06_10455 PF00117 Glutamine amidotransferase class-I CUC06_10460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CUC06_10460 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC06_10475 PF04073 Aminoacyl-tRNA editing domain CUC06_10515 PF00809 Pterin binding enzyme CUC06_10515 PF02607 B12 binding domain CUC06_10515 PF02310 B12 binding domain CUC06_10515 PF02574 Homocysteine S-methyltransferase CUC06_10515 PF02965 Vitamin B12 dependent methionine synthase, activation domain CUC06_10520 PF06738 Putative threonine/serine exporter CUC06_10525 PF12821 Threonine/Serine exporter, ThrE CUC06_10525 PF06738 Putative threonine/serine exporter CUC06_10535 PF00742 Homoserine dehydrogenase CUC06_10535 PF01842 ACT domain CUC06_10535 PF03447 Homoserine dehydrogenase, NAD binding domain CUC06_10540 PF13840 ACT domain CUC06_10540 PF01842 ACT domain CUC06_10540 PF00696 Amino acid kinase family CUC06_10550 PF09529 Integral membrane protein (intg_mem_TP0381) CUC06_10560 PF08471 Class II vitamin B12-dependent ribonucleotide reductase CUC06_10560 PF02867 Ribonucleotide reductase, barrel domain CUC06_10565 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CUC06_10565 PF08501 Shikimate dehydrogenase substrate binding domain CUC06_10565 PF01488 Shikimate / quinate 5-dehydrogenase CUC06_10570 PF14815 NUDIX domain CUC06_10570 PF00730 HhH-GPD superfamily base excision DNA repair protein CUC06_10570 PF00633 Helix-hairpin-helix motif CUC06_10575 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CUC06_10580 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CUC06_10580 PF00391 PEP-utilising enzyme, mobile domain CUC06_10580 PF02896 PEP-utilising enzyme, TIM barrel domain CUC06_10590 PF00342 Phosphoglucose isomerase CUC06_10600 PF10672 S-adenosylmethionine-dependent methyltransferase CUC06_10600 PF17785 PUA-like domain CUC06_10610 PF01642 Methylmalonyl-CoA mutase CUC06_10610 PF02310 B12 binding domain CUC06_10615 PF01642 Methylmalonyl-CoA mutase CUC06_10645 PF03807 NADP oxidoreductase coenzyme F420-dependent CUC06_10645 PF14748 Pyrroline-5-carboxylate reductase dimerisation CUC06_10650 PF03352 Methyladenine glycosylase CUC06_10670 PF01212 Beta-eliminating lyase CUC06_10685 PF01588 Putative tRNA binding domain CUC06_10685 PF03147 Ferredoxin-fold anticodon binding domain CUC06_10685 PF03483 B3/4 domain CUC06_10685 PF03484 tRNA synthetase B5 domain CUC06_10685 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CUC06_10690 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CUC06_10690 PF01409 tRNA synthetases class II core domain (F) CUC06_10710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC06_10710 PF00183 Hsp90 protein CUC06_10735 PF00842 Alanine racemase, C-terminal domain CUC06_10735 PF01168 Alanine racemase, N-terminal domain CUC06_10740 PF02082 Transcriptional regulator CUC06_10745 PF01053 Cys/Met metabolism PLP-dependent enzyme CUC06_10750 PF00291 Pyridoxal-phosphate dependent enzyme CUC06_10755 PF02581 Thiamine monophosphate synthase CUC06_10760 PF02110 Hydroxyethylthiazole kinase family CUC06_10775 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC06_10775 PF02838 Glycosyl hydrolase family 20, domain 2 CUC06_10775 PF07691 PA14 domain CUC06_10780 PF02838 Glycosyl hydrolase family 20, domain 2 CUC06_10780 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC06_10780 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CUC06_10780 PF03173 Putative carbohydrate binding domain CUC06_10790 PF00293 NUDIX domain CUC06_10805 PF02075 Crossover junction endodeoxyribonuclease RuvC CUC06_10810 PF00270 DEAD/DEAH box helicase CUC06_10810 PF00271 Helicase conserved C-terminal domain CUC06_10815 PF00753 Metallo-beta-lactamase superfamily CUC06_10820 PF04909 Amidohydrolase CUC06_10835 PF13533 Biotin-lipoyl like CUC06_10840 PF00873 AcrB/AcrD/AcrF family CUC06_10845 PF00186 Dihydrofolate reductase CUC06_10850 PF00303 Thymidylate synthase CUC06_10855 PF13091 PLD-like domain CUC06_10855 PF13396 Phospholipase_D-nuclease N-terminal CUC06_10860 PF00364 Biotin-requiring enzyme CUC06_10860 PF02436 Conserved carboxylase domain CUC06_10860 PF00682 HMGL-like CUC06_10870 PF01554 MatE CUC06_10875 PF10609 NUBPL iron-transfer P-loop NTPase CUC06_10890 PF08502 LeuA allosteric (dimerisation) domain CUC06_10890 PF00682 HMGL-like CUC06_10900 PF01432 Peptidase family M3 CUC06_10905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC06_10910 PF00873 AcrB/AcrD/AcrF family CUC06_10915 PF02321 Outer membrane efflux protein CUC06_10955 PF00654 Voltage gated chloride channel CUC06_10970 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CUC06_10970 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CUC06_10980 PF02684 Lipid-A-disaccharide synthetase CUC06_10985 PF09335 SNARE associated Golgi protein CUC06_11045 PF09827 CRISPR associated protein Cas2 CUC06_11050 PF01867 CRISPR associated protein Cas1 CUC06_11065 PF09704 CRISPR-associated protein (Cas_Cas5) CUC06_11085 PF00171 Aldehyde dehydrogenase family CUC06_11115 PF06628 Catalase-related immune-responsive CUC06_11115 PF00199 Catalase CUC06_11115 PF18011 C-terminal domain found in long catalases CUC06_11130 PF01578 Cytochrome C assembly protein CUC06_11135 PF02915 Rubrerythrin CUC06_11140 PF13302 Acetyltransferase (GNAT) domain CUC06_11150 PF01580 FtsK/SpoIIIE family CUC06_11150 PF17854 FtsK alpha domain CUC06_11150 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CUC06_11150 PF09397 Ftsk gamma domain CUC06_11170 PF10531 SLBB domain CUC06_11170 PF02563 Polysaccharide biosynthesis/export protein CUC06_11175 PF13614 AAA domain CUC06_11185 PF02397 Bacterial sugar transferase CUC06_11190 PF00535 Glycosyl transferase family 2 CUC06_11195 PF01943 Polysaccharide biosynthesis protein CUC06_11200 PF00535 Glycosyl transferase family 2 CUC06_11205 PF08759 Glycosyltransferase GT-D fold CUC06_11205 PF01501 Glycosyl transferase family 8 CUC06_11210 PF00535 Glycosyl transferase family 2 CUC06_11225 PF13439 Glycosyltransferase Family 4 CUC06_11230 PF13439 Glycosyltransferase Family 4 CUC06_11230 PF00534 Glycosyl transferases group 1 CUC06_11255 PF00535 Glycosyl transferase family 2 CUC06_11260 PF00132 Bacterial transferase hexapeptide (six repeats) CUC06_11280 PF01757 Acyltransferase family CUC06_11295 PF01636 Phosphotransferase enzyme family CUC06_11300 PF05025 RbsD / FucU transport protein family CUC06_11305 PF00155 Aminotransferase class I and II CUC06_11310 PF09334 tRNA synthetases class I (M) CUC06_11310 PF08264 Anticodon-binding domain of tRNA CUC06_11315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUC06_11320 PF00390 Malic enzyme, N-terminal domain CUC06_11320 PF01515 Phosphate acetyl/butaryl transferase CUC06_11320 PF03949 Malic enzyme, NAD binding domain CUC06_11330 PF00722 Glycosyl hydrolases family 16 CUC06_11335 PF00933 Glycosyl hydrolase family 3 N terminal domain CUC06_11355 PF04055 Radical SAM superfamily CUC06_11355 PF06969 HemN C-terminal domain CUC06_11390 PF02403 Seryl-tRNA synthetase N-terminal domain CUC06_11390 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUC06_11395 PF08240 Alcohol dehydrogenase GroES-like domain CUC06_11395 PF00107 Zinc-binding dehydrogenase CUC06_11405 PF00795 Carbon-nitrogen hydrolase CUC06_11410 PF17863 AAA lid domain CUC06_11410 PF07726 ATPase family associated with various cellular activities (AAA) CUC06_11420 PF01195 Peptidyl-tRNA hydrolase CUC06_11425 PF00905 Penicillin binding protein transpeptidase domain CUC06_11425 PF00912 Transglycosylase CUC06_11440 PF00709 Adenylosuccinate synthetase CUC06_11460 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CUC06_11460 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CUC06_11465 PF00374 Nickel-dependent hydrogenase CUC06_11475 PF01750 Hydrogenase maturation protease CUC06_11480 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CUC06_11510 PF00881 Nitroreductase family CUC06_11515 PF00155 Aminotransferase class I and II CUC06_11550 PF05683 Fumarase C-terminus CUC06_11550 PF05681 Fumarate hydratase (Fumerase) CUC06_11570 PF01555 DNA methylase CUC06_11590 PF02838 Glycosyl hydrolase family 20, domain 2 CUC06_11590 PF00728 Glycosyl hydrolase family 20, catalytic domain CUC06_11590 PF07691 PA14 domain CUC06_11595 PF00448 SRP54-type protein, GTPase domain CUC06_11595 PF02978 Signal peptide binding domain CUC06_11595 PF02881 SRP54-type protein, helical bundle domain CUC06_11640 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CUC06_11645 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CUC06_11660 PF13193 AMP-binding enzyme C-terminal domain CUC06_11660 PF00501 AMP-binding enzyme CUC06_11695 PF01432 Peptidase family M3 CUC06_11705 PF03485 Arginyl tRNA synthetase N terminal domain CUC06_11705 PF00750 tRNA synthetases class I (R) CUC06_11705 PF05746 DALR anticodon binding domain CUC06_11740 PF17755 UvrA DNA-binding domain CUC06_11740 PF17760 UvrA interaction domain CUC06_11740 PF00005 ABC transporter CUC06_11745 PF02810 SEC-C motif CUC06_11745 PF07517 SecA DEAD-like domain CUC06_11745 PF07516 SecA Wing and Scaffold domain CUC06_11745 PF01043 SecA preprotein cross-linking domain CUC06_11750 PF00583 Acetyltransferase (GNAT) family CUC06_11750 PF00696 Amino acid kinase family CUC06_11760 PF00293 NUDIX domain CUC06_11765 PF08299 Bacterial dnaA protein helix-turn-helix CUC06_11765 PF00308 Bacterial dnaA protein CUC06_11765 PF11638 DnaA N-terminal domain CUC06_11770 PF00005 ABC transporter CUC06_11790 PF01784 NIF3 (NGG1p interacting factor 3) CUC06_11795 PF00849 RNA pseudouridylate synthase CUC06_11800 PF01817 Chorismate mutase type II CUC06_11800 PF01842 ACT domain CUC06_11800 PF00800 Prephenate dehydratase CUC06_11810 PF03120 NAD-dependent DNA ligase OB-fold domain CUC06_11810 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CUC06_11810 PF01653 NAD-dependent DNA ligase adenylation domain CUC06_11810 PF00533 BRCA1 C Terminus (BRCT) domain CUC06_11815 PF01066 CDP-alcohol phosphatidyltransferase CUC06_11825 PF00270 DEAD/DEAH box helicase CUC06_11825 PF00271 Helicase conserved C-terminal domain CUC06_11840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CUC06_11855 PF07690 Major Facilitator Superfamily CUC06_11860 PF00309 Sigma-54 factor, Activator interacting domain (AID) CUC06_11860 PF04552 Sigma-54, DNA binding domain CUC06_11860 PF04963 Sigma-54 factor, core binding domain CUC06_11870 PF02567 Phenazine biosynthesis-like protein CUC06_11875 PF02659 Putative manganese efflux pump CUC06_11895 PF12002 MgsA AAA+ ATPase C terminal CUC06_11895 PF16193 AAA C-terminal domain CUC06_11895 PF00004 ATPase family associated with various cellular activities (AAA) CUC06_11905 PF01370 NAD dependent epimerase/dehydratase family CUC06_11910 PF01636 Phosphotransferase enzyme family CUC06_11930 PF03129 Anticodon binding domain CUC06_11930 PF09180 Prolyl-tRNA synthetase, C-terminal CUC06_11930 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUC06_11945 PF01527 Transposase CUC06_11980 PF13520 Amino acid permease CUC06_11985 PF04960 Glutaminase CUC06_12000 PF01235 Sodium:alanine symporter family CUC06_12010 PF00472 RF-1 domain CUC06_12010 PF03462 PCRF domain CUC06_12015 PF17827 PrmC N-terminal domain CUC06_12015 PF05175 Methyltransferase small domain CUC06_12020 PF04851 Type III restriction enzyme, res subunit CUC06_12020 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CUC06_12020 PF18074 Primosomal protein N C-terminal domain CUC06_12020 PF17764 3′ DNA-binding domain (3′BD) CUC06_12020 PF00271 Helicase conserved C-terminal domain CUC06_12025 PF01678 Diaminopimelate epimerase CUC06_12045 PF01209 ubiE/COQ5 methyltransferase family CUC06_12050 PF01554 MatE