A4V05_00035	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A4V05_00035	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A4V05_00035	SM00493	A4V05_00035
A4V05_00055	SM00644	A4V05_00055
A4V05_00080	SM01276	A4V05_00080
A4V05_00115	SM00955	A4V05_00115
A4V05_00145	SM00487	DEAD-like helicases superfamily
A4V05_00145	SM00490	helicase superfamily c-terminal domain
A4V05_00310	SM00758	A4V05_00310
A4V05_00325	SM00316	Ribosomal protein S1-like RNA-binding domain
A4V05_00360	SM00382	ATPases associated with a variety of cellular activities
A4V05_00380	SM00360	RNA recognition motif
A4V05_00530	SM00822	A4V05_00530
A4V05_00540	SM00382	ATPases associated with a variety of cellular activities
A4V05_00560	SM00116	Domain in cystathionine beta-synthase and other proteins.
A4V05_00560	SM01091	Transporter associated domain
A4V05_00590	SM00342	helix_turn_helix, arabinose operon control protein
A4V05_00605	SM00850	LytTr DNA-binding domain
A4V05_00690	SM00382	ATPases associated with a variety of cellular activities
A4V05_00710	SM00840	A4V05_00710
A4V05_00735	SM00838	Elongation factor G C-terminus
A4V05_00750	SM00869	Autotransporter beta-domain
A4V05_00755	SM00663	RNA polymerase I subunit A N-terminus
A4V05_00780	SM00649	Ribosomal protein L11/L12
A4V05_00785	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A4V05_00785	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A4V05_00815	SM00382	ATPases associated with a variety of cellular activities
A4V05_00815	SM00994	ClpX C4-type zinc finger
A4V05_00815	SM01086	C-terminal, D2-small domain, of ClpB protein
A4V05_00880	SM00248	ankyrin repeats
A4V05_00905	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A4V05_00915	SM00996	S-adenosyl-L-homocysteine hydrolase
A4V05_00915	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
A4V05_00950	SM00487	DEAD-like helicases superfamily
A4V05_00950	SM00490	helicase superfamily c-terminal domain
A4V05_00990	SM00529	Helix-turn-helix diphteria tox regulatory element
A4V05_01030	SM00899	A4V05_01030
A4V05_01035	SM00899	A4V05_01035
A4V05_01040	SM01235	A4V05_01040
A4V05_01045	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4V05_01065	SM00382	ATPases associated with a variety of cellular activities
A4V05_01065	SM00959	Rho termination factor, N-terminal domain
A4V05_01075	SM00028	Tetratricopeptide repeats
A4V05_01115	SM01011	Aminopeptidase P, N-terminal domain
A4V05_01135	SM00387	Histidine kinase-like ATPases
A4V05_01135	SM00388	His Kinase A (phosphoacceptor) domain
A4V05_01140	SM00448	cheY-homologous receiver domain
A4V05_01140	SM00862	Transcriptional regulatory protein, C terminal
A4V05_01150	SM00710	Parallel beta-helix repeats
A4V05_01150	SM00869	Autotransporter beta-domain
A4V05_01160	SM00986	Uracil DNA glycosylase superfamily
A4V05_01160	SM00987	UreE urease accessory protein, C-terminal domain 
A4V05_01165	SM00876	Biotin and Thiamin Synthesis associated domain
A4V05_01210	SM00650	Ribosomal RNA adenine dimethylases
A4V05_01430	SM00849	Metallo-beta-lactamase superfamily
A4V05_01440	SM00220	Serine/Threonine protein kinases, catalytic domain
A4V05_01450	SM00422	helix_turn_helix, mercury resistance
A4V05_01470	SM00327	von Willebrand factor (vWF) type A domain
A4V05_01490	SM00382	ATPases associated with a variety of cellular activities
A4V05_01500	SM00382	ATPases associated with a variety of cellular activities
A4V05_01550	SM00382	ATPases associated with a variety of cellular activities
A4V05_01555	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A4V05_01555	SM00895	A4V05_01555
A4V05_01580	SM01192	A4V05_01580
A4V05_01580	SM01193	A4V05_01580
A4V05_01615	SM00829	Enoylreductase
A4V05_01620	SM00732	Likely ribonuclease with RNase H fold.
A4V05_01635	SM00387	Histidine kinase-like ATPases
A4V05_01635	SM00433	TopoisomeraseII
A4V05_01650	SM00491	A4V05_01650
A4V05_01655	SM00382	ATPases associated with a variety of cellular activities
A4V05_01695	SM00798	AICARFT/IMPCHase bienzyme
A4V05_01695	SM00851	MGS-like domain
A4V05_01720	SM00644	A4V05_01720
A4V05_01725	SM00487	DEAD-like helicases superfamily
A4V05_01725	SM00490	helicase superfamily c-terminal domain
A4V05_01810	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A4V05_01820	SM00116	Domain in cystathionine beta-synthase and other proteins.
A4V05_01820	SM01131	A4V05_01820
A4V05_01885	SM00465	GIY-YIG type nucleases (URI domain)
A4V05_01900	SM00028	Tetratricopeptide repeats
A4V05_01920	SM00644	A4V05_01920
A4V05_01950	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A4V05_01955	SM00851	MGS-like domain
A4V05_01955	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A4V05_01960	SM01230	A4V05_01960
A4V05_01980	SM01234	A4V05_01980
A4V05_01995	SM01230	A4V05_01995
A4V05_02030	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A4V05_02135	SM00869	Autotransporter beta-domain
A4V05_02145	SM00387	Histidine kinase-like ATPases
A4V05_02145	SM00433	TopoisomeraseII
A4V05_02150	SM00434	DNA Topoisomerase IV
A4V05_02190	SM00382	ATPases associated with a variety of cellular activities
A4V05_02210	SM00382	ATPases associated with a variety of cellular activities
A4V05_02240	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A4V05_02265	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4V05_02275	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4V05_02330	SM00493	A4V05_02330
A4V05_02340	SM00825	Beta-ketoacyl synthase
A4V05_02385	SM00382	ATPases associated with a variety of cellular activities
A4V05_02395	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A4V05_02425	SM00822	A4V05_02425
A4V05_02510	SM00671	Sel1-like repeats.
A4V05_02530	SM00883	Chaperonin 10 Kd subunit
A4V05_02585	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A4V05_02590	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A4V05_02615	SM00220	Serine/Threonine protein kinases, catalytic domain
A4V05_02620	SM00487	DEAD-like helicases superfamily
A4V05_02620	SM00490	helicase superfamily c-terminal domain
A4V05_02620	SM00982	A4V05_02620
A4V05_02620	SM01058	CarD-like/TRCF domain
A4V05_02695	SM00984	UDP binding domain
A4V05_02710	SM00776	A4V05_02710
A4V05_02760	SM00382	ATPases associated with a variety of cellular activities
A4V05_02775	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A4V05_02790	SM00671	Sel1-like repeats.
A4V05_02805	SM00382	ATPases associated with a variety of cellular activities
A4V05_02835	SM01152	A4V05_02835
A4V05_02845	SM00271	DnaJ molecular chaperone homology domain
A4V05_02855	SM00905	Dihydroneopterin aldolase
A4V05_02900	SM01400	A4V05_02900
A4V05_02990	SM00072	Guanylate kinase homologues.
A4V05_03060	SM00054	EF-hand, calcium binding motif
A4V05_03075	SM00662	RNA polymerases D
A4V05_03085	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A4V05_03120	SM01276	A4V05_03120
A4V05_03135	SM00331	Sigma factor PP2C-like phosphatases
A4V05_03150	SM00487	DEAD-like helicases superfamily
A4V05_03150	SM00490	helicase superfamily c-terminal domain
A4V05_03250	SM00869	Autotransporter beta-domain
A4V05_03300	SM00248	ankyrin repeats
A4V05_03340	SM00487	DEAD-like helicases superfamily
A4V05_03340	SM00490	helicase superfamily c-terminal domain
A4V05_03360	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4V05_03395	SM01359	A4V05_03395
A4V05_03395	SM01360	A4V05_03395
A4V05_03475	SM00562	A4V05_03475
A4V05_03500	SM00382	ATPases associated with a variety of cellular activities
A4V05_03505	SM00382	ATPases associated with a variety of cellular activities
A4V05_03550	SM01001	AIR carboxylase
A4V05_03630	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
A4V05_03635	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
A4V05_03685	SM00710	Parallel beta-helix repeats
A4V05_03685	SM00869	Autotransporter beta-domain
A4V05_03705	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4V05_03715	SM00400	zinc finger
A4V05_03715	SM00493	A4V05_03715
A4V05_03745	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4V05_03745	SM00245	tail specific protease
A4V05_03760	SM00487	DEAD-like helicases superfamily
A4V05_03760	SM00490	helicase superfamily c-terminal domain
A4V05_03760	SM00847	Helicase associated domain (HA2)  Add an annotation
A4V05_03780	SM00642	Alpha-amylase domain
A4V05_03785	SM00028	Tetratricopeptide repeats
A4V05_03815	SM00460	Transglutaminase/protease-like homologues
A4V05_03895	SM01038	Beta galactosidase small chain
A4V05_03905	SM00382	ATPases associated with a variety of cellular activities
A4V05_03935	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A4V05_04035	SM00861	Transketolase, pyrimidine binding domain
A4V05_04055	SM00226	Low molecular weight phosphatase family
A4V05_04075	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4V05_04115	SM00671	Sel1-like repeats.
A4V05_04355	SM00341	Helicase and RNase D C-terminal
A4V05_04355	SM00487	DEAD-like helicases superfamily
A4V05_04355	SM00490	helicase superfamily c-terminal domain
A4V05_04355	SM00956	A4V05_04355
A4V05_04370	SM00881	CoA binding domain
A4V05_04395	SM00028	Tetratricopeptide repeats
A4V05_04425	SM00869	Autotransporter beta-domain
A4V05_04430	SM00869	Autotransporter beta-domain
A4V05_04450	SM00387	Histidine kinase-like ATPases
A4V05_04450	SM00388	His Kinase A (phosphoacceptor) domain
A4V05_04455	SM00448	cheY-homologous receiver domain
A4V05_04455	SM00862	Transcriptional regulatory protein, C terminal
A4V05_04465	SM01004	Delta-aminolevulinic acid dehydratase
A4V05_04480	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A4V05_04580	SM00642	Alpha-amylase domain
A4V05_04625	SM00382	ATPases associated with a variety of cellular activities
A4V05_04670	SM00487	DEAD-like helicases superfamily
A4V05_04670	SM00490	helicase superfamily c-terminal domain
A4V05_04675	SM00344	helix_turn_helix ASNC type
A4V05_04710	SM00028	Tetratricopeptide repeats
A4V05_04715	SM00327	von Willebrand factor (vWF) type A domain
A4V05_04720	SM00327	von Willebrand factor (vWF) type A domain
A4V05_04785	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4V05_04880	SM00422	helix_turn_helix, mercury resistance
A4V05_04890	SM00642	Alpha-amylase domain
A4V05_04965	SM00363	S4 RNA-binding domain
A4V05_04990	SM01007	Class II Aldolase and Adducin N-terminal domain
A4V05_05070	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4V05_05075	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4V05_05075	SM00710	Parallel beta-helix repeats
A4V05_05080	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A4V05_05110	SM01005	Alanine racemase, C-terminal domain
A4V05_05115	SM00382	ATPases associated with a variety of cellular activities
A4V05_05120	SM00382	ATPases associated with a variety of cellular activities
A4V05_05165	SM01209	A4V05_05165
A4V05_05165	SM01210	A4V05_05165
A4V05_05255	SM01329	A4V05_05255
A4V05_05275	SM00849	Metallo-beta-lactamase superfamily
A4V05_05275	SM01027	Beta-Casp domain
A4V05_05345	SM00411	bacterial (prokaryotic) histone like domain
A4V05_05495	SM00382	ATPases associated with a variety of cellular activities
A4V05_05550	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A4V05_05550	SM00474	3'-5' exonuclease
A4V05_05550	SM00475	5'-3' exonuclease
A4V05_05550	SM00482	DNA polymerase A domain
A4V05_05565	SM00998	Adenylosuccinate lyase C-terminus
A4V05_05580	SM00028	Tetratricopeptide repeats
A4V05_05595	SM01130	A4V05_05595
A4V05_05665	SM00758	A4V05_05665
A4V05_05675	SM01018	B12 binding domain
A4V05_05740	SM00478	endonuclease III
A4V05_05765	SM00671	Sel1-like repeats.
A4V05_05835	SM00220	Serine/Threonine protein kinases, catalytic domain
A4V05_05855	SM00873	B3/4 domain
A4V05_05855	SM00874	tRNA synthetase B5 domain
A4V05_05855	SM00896	Ferredoxin-fold anticodon binding domain
A4V05_05870	SM01276	A4V05_05870
A4V05_05875	SM00387	Histidine kinase-like ATPases
A4V05_05885	SM01005	Alanine racemase, C-terminal domain
A4V05_05960	SM00487	DEAD-like helicases superfamily
A4V05_05960	SM00490	helicase superfamily c-terminal domain
A4V05_05965	SM00849	Metallo-beta-lactamase superfamily
A4V05_05980	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4V05_06005	SM00155	Phospholipase D. Active site motifs.
A4V05_06030	SM00712	DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria.
A4V05_06040	SM00917	LeuA allosteric (dimerisation) domain
A4V05_06100	SM01321	A4V05_06100
A4V05_06110	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A4V05_06205	SM00487	DEAD-like helicases superfamily
A4V05_06240	SM00393	Putative single-stranded nucleic acids-binding domain
A4V05_06250	SM01060	A4V05_06250
A4V05_06290	SM00843	A4V05_06290
A4V05_06465	SM00919	Malic enzyme, NAD binding domain
A4V05_06465	SM01274	A4V05_06465
A4V05_06500	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4V05_06590	SM00788	Adenylosuccinate synthetase
A4V05_06715	SM00382	ATPases associated with a variety of cellular activities
A4V05_06715	SM00962	SRP54-type protein, GTPase domain
A4V05_06715	SM00963	SRP54-type protein, helical bundle domain
A4V05_06780	SM00671	Sel1-like repeats.
A4V05_06785	SM00560	LamG-like jellyroll fold domain
A4V05_06785	SM00636	A4V05_06785
A4V05_06805	SM00028	Tetratricopeptide repeats
A4V05_06810	SM00836	DALR anticodon binding domain
A4V05_06810	SM01016	Arginyl tRNA synthetase N terminal dom
A4V05_06850	SM00382	ATPases associated with a variety of cellular activities
A4V05_06855	SM00957	SecA DEAD-like domain
A4V05_06855	SM00958	SecA preprotein cross-linking domain
A4V05_06980	SM00530	Helix-turn-helix XRE-family like proteins 
A4V05_07060	SM00382	ATPases associated with a variety of cellular activities
A4V05_07060	SM00760	Bacterial dnaA protein helix-turn-helix domain
A4V05_07065	SM00382	ATPases associated with a variety of cellular activities
A4V05_07090	SM00363	S4 RNA-binding domain
A4V05_07095	SM00830	Chorismate mutase type II
A4V05_07100	SM00812	Alpha-L-fucosidase
A4V05_07105	SM00292	breast cancer carboxy-terminal domain
A4V05_07105	SM00532	Ligase N family
A4V05_07120	SM00487	DEAD-like helicases superfamily
A4V05_07120	SM00490	helicase superfamily c-terminal domain
A4V05_07195	SM00382	ATPases associated with a variety of cellular activities
A4V05_07230	SM00946	Prolyl-tRNA synthetase, C-terminal
A4V05_07290	SM00937	A4V05_07290
A4V05_07300	SM00487	DEAD-like helicases superfamily
A4V05_07300	SM00490	helicase superfamily c-terminal domain
A4V05_07375	SM00382	ATPases associated with a variety of cellular activities
A4V05_07395	SM00382	ATPases associated with a variety of cellular activities
A4V05_07395	SM01086	C-terminal, D2-small domain, of ClpB protein
A4V05_07405	SM00450	Rhodanese Homology Domain
A4V05_07415	SM00917	LeuA allosteric (dimerisation) domain
A4V05_07505	SM00220	Serine/Threonine protein kinases, catalytic domain
A4V05_07520	SM00220	Serine/Threonine protein kinases, catalytic domain
A4V05_07565	SM00853	MutL C terminal dimerisation domain
A4V05_07565	SM01340	A4V05_07565
A4V05_07645	SM00382	ATPases associated with a variety of cellular activities
A4V05_07675	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4V05_07700	SM01001	AIR carboxylase
A4V05_07775	SM00434	DNA Topoisomerase IV
A4V05_07810	SM00470	ParB-like nuclease domain
A4V05_07900	SM00864	Tubulin/FtsZ family, GTPase domain
A4V05_07905	SM00842	Cell division protein FtsA
A4V05_07920	SM00382	ATPases associated with a variety of cellular activities
A4V05_07925	SM00382	ATPases associated with a variety of cellular activities
A4V05_07940	SM00382	ATPases associated with a variety of cellular activities
A4V05_07965	SM00382	ATPases associated with a variety of cellular activities
A4V05_07970	SM00382	ATPases associated with a variety of cellular activities
A4V05_08020	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4V05_08025	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4V05_08120	SM00220	Serine/Threonine protein kinases, catalytic domain
A4V05_08200	SM00845	GatB domain
A4V05_08215	SM00487	DEAD-like helicases superfamily
A4V05_08215	SM00490	helicase superfamily c-terminal domain
A4V05_08245	SM00530	Helix-turn-helix XRE-family like proteins 
A4V05_08270	SM00831	Cation transporter/ATPase, N-terminus
A4V05_08305	SM00671	Sel1-like repeats.
A4V05_08350	SM00822	A4V05_08350
A4V05_08365	SM00829	Enoylreductase
A4V05_08385	SM00849	Metallo-beta-lactamase superfamily
A4V05_08385	SM01027	Beta-Casp domain
A4V05_08400	SM00671	Sel1-like repeats.
A4V05_08415	SM00937	A4V05_08415
A4V05_08420	SM00529	Helix-turn-helix diphteria tox regulatory element
A4V05_08425	SM00316	Ribosomal protein S1-like RNA-binding domain
A4V05_08490	SM01130	A4V05_08490
A4V05_08560	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A4V05_08615	SM00054	EF-hand, calcium binding motif
A4V05_08620	SM01323	A4V05_08620
A4V05_08650	SM00411	bacterial (prokaryotic) histone like domain
A4V05_08725	SM01374	A4V05_08725
A4V05_08745	SM00322	K homology RNA-binding domain
A4V05_08765	SM01382	A4V05_08765
A4V05_08765	SM01383	A4V05_08765
A4V05_08785	SM01403	A4V05_08785
A4V05_08790	SM00838	Elongation factor G C-terminus
A4V05_08790	SM00889	Elongation factor G, domain IV
A4V05_08815	SM00091	PAS domain
A4V05_08815	SM00387	Histidine kinase-like ATPases
A4V05_08815	SM00388	His Kinase A (phosphoacceptor) domain
A4V05_08820	SM00382	ATPases associated with a variety of cellular activities
A4V05_08820	SM00448	cheY-homologous receiver domain
A4V05_08835	SM00861	Transketolase, pyrimidine binding domain
A4V05_08840	SM00028	Tetratricopeptide repeats
A4V05_08855	SM00173	Ras subfamily of RAS small GTPases
A4V05_08860	SM00382	ATPases associated with a variety of cellular activities
A4V05_08865	SM01059	Chloramphenicol acetyltransferase
A4V05_08880	SM00382	ATPases associated with a variety of cellular activities
A4V05_08900	SM00563	Phosphate acyltransferases
A4V05_08930	SM00479	A4V05_08930
A4V05_08935	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A4V05_08935	SM00534	ATPase domain of DNA mismatch repair MUTS family
A4V05_08950	SM00382	ATPases associated with a variety of cellular activities
A4V05_09010	SM00382	ATPases associated with a variety of cellular activities
A4V05_09025	SM00382	ATPases associated with a variety of cellular activities
A4V05_09050	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A4V05_09050	SM00382	ATPases associated with a variety of cellular activities
A4V05_09090	SM00481	DNA polymerase alpha chain like domain
A4V05_09115	SM00028	Tetratricopeptide repeats
A4V05_09120	SM01091	Transporter associated domain
A4V05_09125	SM00116	Domain in cystathionine beta-synthase and other proteins.
A4V05_09125	SM01091	Transporter associated domain
A4V05_09135	SM00316	Ribosomal protein S1-like RNA-binding domain
A4V05_09135	SM00322	K homology RNA-binding domain
A4V05_09140	SM01387	A4V05_09140
A4V05_09145	SM01266	A4V05_09145
A4V05_09185	SM00812	Alpha-L-fucosidase
A4V05_09235	SM00382	ATPases associated with a variety of cellular activities
A4V05_09245	SM00935	Outer membrane protein (OmpH-like)
A4V05_09260	SM00382	ATPases associated with a variety of cellular activities
A4V05_09310	SM00248	ankyrin repeats
A4V05_09355	SM00382	ATPases associated with a variety of cellular activities
A4V05_09355	SM00962	SRP54-type protein, GTPase domain
A4V05_09360	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4V05_09380	SM00852	Probable molybdopterin binding domain
A4V05_09415	SM00363	S4 RNA-binding domain
A4V05_09415	SM01390	A4V05_09415
A4V05_09485	SM00758	A4V05_09485
A4V05_09490	SM00487	DEAD-like helicases superfamily
A4V05_09490	SM00490	helicase superfamily c-terminal domain
A4V05_09535	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4V05_09560	SM00028	Tetratricopeptide repeats
A4V05_09570	SM00420	helix_turn_helix, Deoxyribose operon repressor
A4V05_09570	SM01134	A4V05_09570
A4V05_09635	SM00776	A4V05_09635
A4V05_09670	SM00382	ATPases associated with a variety of cellular activities
A4V05_09695	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4V05_09695	SM00876	Biotin and Thiamin Synthesis associated domain
A4V05_09760	SM00382	ATPases associated with a variety of cellular activities
A4V05_09865	SM00116	Domain in cystathionine beta-synthase and other proteins.
A4V05_09885	SM00971	Serine acetyltransferase, N-terminal
A4V05_09905	SM00861	Transketolase, pyrimidine binding domain
A4V05_09930	SM01211	A4V05_09930
A4V05_09965	SM00316	Ribosomal protein S1-like RNA-binding domain
A4V05_09980	SM00028	Tetratricopeptide repeats
A4V05_10010	SM00478	endonuclease III
A4V05_10025	SM00986	Uracil DNA glycosylase superfamily
A4V05_10025	SM00987	UreE urease accessory protein, C-terminal domain 
A4V05_10045	SM01091	Transporter associated domain
A4V05_10050	SM00834	Putative regulatory protein
A4V05_10140	SM00474	3'-5' exonuclease
A4V05_10175	SM00244	prohibitin homologues
A4V05_10225	SM00869	Autotransporter beta-domain
A4V05_10250	SM00220	Serine/Threonine protein kinases, catalytic domain
A4V05_10270	SM00563	Phosphate acyltransferases
A4V05_10280	SM00563	Phosphate acyltransferases
A4V05_10295	SM00358	Double-stranded RNA binding motif
A4V05_10295	SM00535	Ribonuclease III family
A4V05_10315	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
A4V05_10350	SM00028	Tetratricopeptide repeats
A4V05_10365	SM00986	Uracil DNA glycosylase superfamily
A4V05_10365	SM00987	UreE urease accessory protein, C-terminal domain 
A4V05_10375	SM00851	MGS-like domain
A4V05_10375	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A4V05_10380	SM00331	Sigma factor PP2C-like phosphatases
A4V05_10380	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A4V05_10430	SM01276	A4V05_10430
A4V05_10435	SM00220	Serine/Threonine protein kinases, catalytic domain
A4V05_10480	SM00382	ATPases associated with a variety of cellular activities
A4V05_10560	SM00507	HNH nucleases
A4V05_10570	SM00849	Metallo-beta-lactamase superfamily
A4V05_10615	SM00257	Lysin motif
A4V05_10645	SM00382	ATPases associated with a variety of cellular activities
A4V05_10650	SM00646	A4V05_10650
A4V05_10695	SM00382	ATPases associated with a variety of cellular activities
A4V05_10735	SM00382	ATPases associated with a variety of cellular activities
A4V05_10765	SM00903	Flavin reductase like domain
A4V05_10770	SM00382	ATPases associated with a variety of cellular activities
A4V05_10775	SM00869	Autotransporter beta-domain
A4V05_10885	SM00382	ATPases associated with a variety of cellular activities
A4V05_10955	SM00838	Elongation factor G C-terminus
A4V05_10975	SM00240	Forkhead associated domain
A4V05_11040	SM00226	Low molecular weight phosphatase family
A4V05_11045	SM00116	Domain in cystathionine beta-synthase and other proteins.
A4V05_11045	SM01240	A4V05_11045
A4V05_11055	SM01266	A4V05_11055
A4V05_11095	SM00904	Riboflavin kinase
A4V05_11225	SM00855	Phosphoglycerate mutase family
A4V05_11265	SM00318	Staphylococcal nuclease homologues
A4V05_11280	SM00470	ParB-like nuclease domain
A4V05_11490	SM00530	Helix-turn-helix XRE-family like proteins 
A4V05_11515	SM01329	A4V05_11515
A4V05_11530	SM00382	ATPases associated with a variety of cellular activities
A4V05_11545	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4V05_11550	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4V05_11570	SM01207	A4V05_11570
A4V05_11575	SM00331	Sigma factor PP2C-like phosphatases
A4V05_11590	SM00890	Domain of unknown function
A4V05_11630	SM00487	DEAD-like helicases superfamily
A4V05_11630	SM00490	helicase superfamily c-terminal domain
A4V05_11630	SM00847	Helicase associated domain (HA2)  Add an annotation
A4V05_11640	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4V05_11655	SM01228	A4V05_11655
A4V05_11680	SM00480	DNA polymerase III beta subunit
A4V05_11690	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
A4V05_11705	SM00257	Lysin motif
A4V05_11720	SM01038	Beta galactosidase small chain
A4V05_11740	SM00387	Histidine kinase-like ATPases
A4V05_11740	SM00388	His Kinase A (phosphoacceptor) domain
A4V05_11745	SM00448	cheY-homologous receiver domain
A4V05_11745	SM00862	Transcriptional regulatory protein, C terminal
A4V05_11775	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4V05_11785	SM00382	ATPases associated with a variety of cellular activities
A4V05_11785	SM01086	C-terminal, D2-small domain, of ClpB protein
A4V05_11860	SM01192	A4V05_11860
A4V05_11860	SM01193	A4V05_11860
A4V05_11865	SM00518	AP endonuclease family 2
A4V05_11870	SM00812	Alpha-L-fucosidase
A4V05_11875	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A4V05_11885	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4V05_11910	SM00411	bacterial (prokaryotic) histone like domain
A4V05_11925	SM00448	cheY-homologous receiver domain
A4V05_11930	SM00387	Histidine kinase-like ATPases
A4V05_11995	SM00098	Alkaline phosphatase homologues
A4V05_12015	SM00841	Elongation factor P, C-terminal
A4V05_12015	SM01185	A4V05_12015
A4V05_12035	SM00849	Metallo-beta-lactamase superfamily
A4V05_12075	SM00861	Transketolase, pyrimidine binding domain
A4V05_12090	SM00422	helix_turn_helix, mercury resistance
A4V05_12125	SM00382	ATPases associated with a variety of cellular activities
A4V05_12145	SM00062	Bacterial periplasmic substrate-binding proteins
A4V05_12145	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A4V05_12215	SM00363	S4 RNA-binding domain
A4V05_12275	SM00530	Helix-turn-helix XRE-family like proteins 
