LOCUS KM272186 6925 bp cRNA linear VRL 01-DEC-2014 DEFINITION Alajuela virus strain MARU 11079 segment L, complete sequence. ACCESSION KM272186 VERSION KM272186.1 KEYWORDS . SOURCE Alajuela virus ORGANISM Alajuela virus Viruses; ssRNA viruses; ssRNA negative-strand viruses; Bunyavirales; Peribunyaviridae; Orthobunyavirus. REFERENCE 1 (bases 1 to 6925) AUTHORS Nunes,M.R., Chiang,J.O., de Lima,C.P., Martins,L.C., Aragao Dias,A., Cardoso,J.F., Silva,S.P., Da Silva,D.E., Oliveira,L.F., Vasconcelos,J.M., Ferreira,J.P., Travassos da Rosa,A.P., Guzman,H., Tesh,R.B. and Vasconcelos,P.F. TITLE New Genome Sequences of Gamboa Viruses (Family Bunyaviridae, Genus Orthobunyavirus) Isolated in Panama and Argentina JOURNAL Genome Announc 2 (6) (2014) PUBMED 25414487 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 6925) AUTHORS Nunes,M.R.T., Lima,C.P.S., Martins,L.C., Diniz Junior,J.A.P., Cardoso,J.F., Silva,S.P., Da Silva,D.E.A., Oliveira,L.F., Vasconcelos,J.M., Chiang,J.O., Travassos da Rosa,A.P.A., Guzman,H., Tesh,R. and Vasconcelos,P.F.C. TITLE Direct Submission JOURNAL Submitted (04-AUG-2014) Center for Technological Innovation, Evandro Chagas Institute, BR 316, Km 07, s/n, Ananindeua, Para 67.030-000, Brazil COMMENT ##Assembly-Data-START## Assembly Method :: Mira 4.0 Coverage :: 38 Sequencing Technology :: ION ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..6925 /organism="Alajuela virus" /mol_type="viral cRNA" /strain="MARU 11079" /host="Aedeomyia squamipennis" /db_xref="taxon:1552846" /segment="L" /country="Panama: Panama State" /lat_lon="9.13 N 79.70 W" /collection_date="09-Jan-1963" 5'UTR 1..49 CDS 50..6871 /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="AIS74638.1" /translation="MNETLEEELKALEGRLKGVRETSDGKELFTAILVRRHDYFGYEL CKAMDIPYRNDVKLVDILHECFHDIDTGDVTIPNITPDNFIFDGEVLTILDYKVSVSL ESTEHTIEKYTKELDKIRNFLPSRVELCIIRCHPRTTKLTFTNDRIKRMYANIQLELN FEPFENLITELKDRFRDSDEFLAMIAHGDVTLTVKWCQTGCPELRQHPIFNEFYESLE DEYKEMFDRSMQFSAYSAEKWNQNLIKIRDQTSDEYKEFVRRNSSELFQTDGNYPEPS KEEILAGWDEMSERIQQTRQMSKDINDQKPSIHFIWSEHNPKLPTHSTHKLMMVSKLL QNLSSNSDFADDFRQIGKLMDIGDNVLVYENHCEALKLEARKNLKPIQNRKLNPRRIG SAQVLWEQQFLMSAEDMGKARKVHLLKEYFGIGRHRDFSHKTNADINMEKPKILDFND PDIIRMSQIMMEKTSGLLSQQTTLKPNHAIVDEYMDNIKEANENTFKTIKQILSTKYW SCISDISMLMKNILSVAQYNRSHTFRLAMCANNSLYALVLPSADIKSRKSTVVFCIIA LHTEEESVFNPGCLHATYKTFTSDKTGWLSISKAIRLDKERCQRIVTSPGLFLSTVTL LKQDNNSIDLNDVMNFALYTSLNVTKSMLSLTEPSRYMIMNSLAVSSHVKEYISEKFN PYTKTLFSVYMCNKIKIGCLNAFNQRQKIKLRDIFLTDFDITQKGISDNRDLTSIWFP GFVTLKEYLNQIFLVFYLNPKGLHEKHHVMIDLLKTVIEIELDQRNNIPVPWSDTPKK QTVNLPIFLNSVAINLMHDTAYCTHLRSRIENRNNLRRSFSTISTFTSSKSCIKIGDF SSLKTEINRKIEKARKAEEKRSRIANPNFIHDEEYKNVVEHCNYDMMRKAIPEYTDHI STKVFDRLYELQKNGTLTDEPVVGQILEMMVNHKQFFFSFFNKGQKTAKDREIFVGEY EAKMCMYLVERIFKERSKVNPDEMISEPGDGKLKVLERKAEQEIRFLIEHIKQRNSPI MEEIENLKESVLFDKSKLEDLVNSKYHGLKLEINADMSKWSAQDVFFKYFWVVAMDPI LYPEEKERIIYFFCNYMNKRLIIPDEVIYTILDQQIPYKNDMVMQVTNGLHSNTFNVK RNWLQGNFNYMSSYVHSCAMSVYKDILRTAAKKIEADIMVNSMVHSDDNQTAICLINN RLDTRVFTKFAIQLFEKICLTFGCQANMKKTYVTNHIKEFVSLFNLYGEPFSVYGRFT LTAVGDCAYIGPYEDLASRISSTQTAIKHGCPASLAWLSISISHWITYLTYNMLPGQI NDPSVSLGIENRREIPIELGGYLEANLSMIALAGLESGNIQFLINLLTKMVNPILFRE NVVSQCSDIKNWDLTRLTFSEIFRLKVLRFLALDAEMDCSDTMGETGEMRSRSLLTPR KFTTAGSLRKLVSFGDFQACQSEPEGINTVVEYMIEHPELLVTKGETAEDYKNIVLYR YNSRRFKESLSIQNPAQLFLEQILFSHKPIIDYTGIQEKYLNLSDSTVTEDQPEILGR VTFPEAFRKIREDLSTLKITINDIQTVYDFVILNDPMVIAIANAHLLSNQGAMQDRLG SSCSTMPEFRNLRLITHSPALVLRSYSTGRYDVPGADPDEMRRDRTHLQEFIDNTKLL LKMEQRIEQNEKAKGSRDILFEIKEITKFYQVCYEYIKSTEHKVKVYILPVKCYTTTD FCAAIQGSLIKDKQWAVIQHIHPVSAGGHKGIVQKHTTNEIKLAEDCMRLIAFFIDTF IDENHRIYMFKRMVDEFTYSGRKVSDLLEIIATSKNRVDFLPILYRSGLLEQRDLDSY DALKSSGRPTWNKWQTTRALDMGKIDLSIDTHRSSIRIIGEDRNLHYAELYLPSINYD SITRSGYKLLNAKHGLKFQSMSEVSVRKDEWYITYQRKSRDNYVYKIFYGKKLLNPLP DHDLRYNRTTNPIVPVCHVIPMVRPDIDRIMLEDMDSLNIENFKIGVLNTGIGEQARL RRCMLHKMKNFEGPDIKSKVINLTKLMKDNTLMSLNYDNVCNVHLSQFCKLLDCNGNE GTLDDAMYSFSDEPMEQTQIDEIECTPIFKVQYSVPGSRYLNYRNAIKELLSREIRQF REAFTLVGDDFDSPENIGYLENIICIIDQLQTNEWSTIMKKCIHICFLASNQDHVFHT FSLNKYFFEGNTPASGRLNWRNLKSFIISLPEIKSAPWRNIFSSFKLKCIALLDREIA KVEVNQDFSKILAREDLRQSFFNFF" 3'UTR 6872..6925 ORIGIN 1 caggtagtgt actcctcata caattaatat ctaaaactct gaaacaaaaa tgaatgaaac 61 actagaagaa gaactgaaag ctctggaagg aagactcaaa ggcgtaagag aaacttccga 121 cggaaaagag cttttcacag ctatactagt tcgtagacat gactactttg gttatgagct 181 ttgcaaagca atggatatac cttaccggaa tgatgtgaag ctggtagaca ttttgcacga 241 gtgttttcat gacattgaca caggggatgt cacaattcct aatatcacac ctgacaactt 301 catattcgat ggcgaggttt taactatttt agactacaaa gtttctgtat ctctagagag 361 tactgaacat acaatagaga aatataccaa agagctggat aagatcagaa atttcctacc 421 atcaagggtt gaactttgta tcataagatg ccatccaaga acaacaaaac taacattcac 481 gaatgacaga ataaaaagaa tgtatgccaa cattcaattg gaactcaatt tcgagccatt 541 tgaaaatcta ataacagaat taaaagacag atttagggat agtgatgaat tcttagctat 601 gattgctcat ggtgatgtga cattaacagt aaaatggtgt cagacagggt gtccagaatt 661 aaggcagcac ccaattttca atgaatttta tgagagtctt gaagatgaat ataaagagat 721 gtttgataga tctatgcaat tttctgcata ttctgctgag aaatggaacc aaaatctaat 781 aaaaatacga gatcaaacct cagatgaata taaagaattt gtgaggagaa attcatctga 841 gctcttccaa actgatggaa attatccaga acccagtaaa gaagaaatac tagcagggtg 901 ggacgaaatg tctgagcgaa tacaacagac caggcaaatg tctaaggata tcaatgatca 961 gaaaccaagc atccatttca tatggagtga acataatcca aaattaccaa cgcattcaac 1021 tcacaagtta atgatggtgt caaaattact gcaaaattta tcaagcaaca gtgactttgc 1081 tgatgatttt aggcaaatag gtaagcttat ggacataggt gacaatgtgt tagtttatga 1141 aaaccattgt gaagcactaa aattagaggc tagaaagaat ctgaaaccta tacagaatag 1201 aaaactgaat ccaaggagaa taggtagtgc tcaagttctt tgggagcaac agtttttgat 1261 gtctgctgaa gatatgggta aagcccgtaa agttcacttg cttaaagaat attttggaat 1321 aggacggcat agagacttta gccataaaac aaatgcagat ataaacatgg aaaagccaaa 1381 aatattggat tttaatgatc cagacataat aaggatgagt cagataatga tggaaaagac 1441 ttcaggctta ctatcccagc agacgacgct taagccaaat cacgcaattg tagatgagta 1501 catggataat ataaaagagg cgaatgaaaa cacatttaag actattaagc agatactatc 1561 aacaaaatat tggtcttgta tctcagacat ttcaatgctg atgaaaaaca tattgtctgt 1621 agctcagtat aatcgatcac atacttttag actggcaatg tgtgctaaca actctctata 1681 tgcattagta ctaccatctg ctgatataaa gagtagaaag tcaacagtgg ttttctgcat 1741 aattgcatta cacactgaag aagaatcagt ttttaaccct ggatgcttac atgcaacata 1801 taaaacattc acaagtgata aaacagggtg gttatcgatt tctaaagcta tacgacttga 1861 caaagaaaga tgtcagagga ttgtgactag tccaggttta tttttatcaa cagtgaccct 1921 attaaaacaa gacaataact cgattgacct caatgatgtg atgaattttg cattgtacac 1981 aagtttgaat gtgaccaaaa gcatgttgtc actaacagag ccttctcgtt acatgataat 2041 gaattcactt gctgtatcta gtcatgtaaa agagtatata tcagaaaaat ttaatccgta 2101 cactaaaaca ctattcagtg tctatatgtg caacaaaatt aaaataggat gccttaatgc 2161 cttcaatcaa cgacagaaaa taaaattgag agatatcttt ttaacagatt ttgacataac 2221 ccaaaaagga atatcagata acagagatct aacgagtata tggttcccag gatttgtcac 2281 acttaaagag tatctcaatc agatctttct agttttctat ctaaatccaa aaggtttaca 2341 tgaaaagcat catgttatga tagacttatt gaaaacagtg atagagattg aattggacca 2401 aagaaataat atacctgtgc cttggtctga taccccaaaa aaacagactg ttaacctacc 2461 aatatttctc aattctgtag ctattaacct aatgcatgac acagcctact gcactcatct 2521 tcgatcacga atagaaaata gaaacaactt aagacgttct ttttcaacaa tttcaacatt 2581 cacaagtagt aaaagctgca taaagattgg agatttttct agtctcaaaa ctgaaatcaa 2641 tagaaaaatc gagaaagcca gaaaagcaga ggaaaagaga agtagaattg caaacccgaa 2701 ctttatacat gacgaagaat ataaaaatgt tgtagaacat tgcaattatg atatgatgag 2761 gaaagcaata ccagaataca cagatcatat ctccacaaaa gtttttgaca gactatatga 2821 gcttcaaaag aatggaactc taaccgatga accagtcgtt gggcagatct tggaaatgat 2881 ggtaaatcat aaacagttct ttttctcttt tttcaacaaa ggacaaaaaa cagctaaaga 2941 cagagagatc ttcgttggtg aatatgaggc aaaaatgtgt atgtatctag tcgaacgaat 3001 tttcaaagaa agatcaaagg taaatccaga tgaaatgata agcgaacctg gtgatgggaa 3061 gttgaaagtt ctagaacgta aagcagaaca ggagattcga ttcctcatag aacacatcaa 3121 gcagagaaat tcgccaatca tggaggagat tgaaaatctt aaagaaagtg tactttttga 3181 caaaagcaaa ctagaagatc tagtaaatag caagtatcac ggactgaaat tagaaataaa 3241 tgcagatatg tcaaaatgga gtgcccaaga cgtattcttt aaatactttt gggttgtggc 3301 catggatcca atattgtatc ctgaagaaaa agaacggata atttactttt tttgcaatta 3361 catgaataaa cgattgataa ttccggatga agtgatctat acaattttgg accaacaaat 3421 accatacaag aacgatatgg tcatgcaagt aacaaatggt ttacattcaa atacatttaa 3481 tgttaaaagg aactggctac agggaaattt taactatatg tccagctatg tccacagttg 3541 tgccatgtct gtttacaaag acatacttcg aactgctgca aagaaaattg aagctgatat 3601 tatggtgaat tccatggttc attctgacga caatcagacc gcaatatgct taatcaacaa 3661 taggttggac acaagagtct ttacaaagtt tgcaattcaa ttgttcgaaa aaatatgttt 3721 gacttttgga tgtcaggcca atatgaaaaa aacttatgtc accaatcaca taaaggaatt 3781 cgtttcgctc ttcaacctgt atggtgagcc gttttcagtt tatggaagat tcacattaac 3841 tgccgttgga gattgtgcct atattggccc atatgaagac ttagcgagca gaatctcatc 3901 aactcaaact gcaataaagc acggatgccc agcaagctta gcttggcttt caatctctat 3961 aagccattgg ataacatacc tgacttataa tatgcttcca ggacaaatta atgatccatc 4021 agtttcactg ggaattgaaa acaggcgaga aataccgata gaattaggcg gttatctaga 4081 agcaaatctg tcaatgatcg ccctagcagg actagaatct ggaaacatac aattcttaat 4141 caatttactg acaaaaatgg tgaatcctat tttatttaga gaaaatgttg tgtcacagtg 4201 ctctgacata aaaaattggg atctaaccag gctaactttt tctgaaatct ttagacttaa 4261 agtcttaaga ttcctcgctc ttgatgcaga gatggattgc tctgatacca tgggagaaac 4321 aggagaaatg cgcagtagat ctctattaac tcctagaaag tttaccacag cggggtcatt 4381 gaggaaacta gtttcatttg gggattttca agcttgtcaa tctgaaccag aaggaattaa 4441 cactgttgta gagtatatga ttgagcatcc tgaattgctt gtgacaaaag gtgagaccgc 4501 agaagattac aaaaacattg tattgtacag atacaattca agacgattca aagaatcact 4561 atccatacag aatccagcac agttgttctt ggaacaaatt ttattttcac acaagcccat 4621 aattgattac actgggattc aagaaaaata tctaaatttg tctgacagca cagttactga 4681 ggatcaacca gaaatactag gcagagtcac atttccagag gcatttagaa agattaggga 4741 ggacctatca acattaaaaa taactatcaa tgacattcag actgtttacg attttgttat 4801 tttgaatgat cctatggtaa ttgcaatagc aaatgcacat cttctttcaa atcaaggtgc 4861 aatgcaagac agattgggat cgtcctgcag tacaatgcca gaatttagaa atcttagatt 4921 aatcactcac tcgccagctc tagttcttag atcatatagc actgggagat atgatgtacc 4981 aggagctgac ccagatgaaa tgagaagaga taggacacac ttacaagaat ttatagacaa 5041 tacaaagctc ctattgaaga tggaacagag gatcgaacaa aatgagaaag caaaaggctc 5101 tagagatata ctttttgaaa taaaggaaat tacaaaattt tatcaggtct gttatgaata 5161 tatcaagtcc acagaacaca aggttaaagt atatatctta ccagtcaaat gttacactac 5221 aactgacttt tgtgctgcca ttcaaggatc attaatcaaa gacaagcagt gggctgtaat 5281 ccaacatata cacccagtat ctgcaggagg ccacaaaggc attgttcaaa aacacacaac 5341 aaatgaaata aaacttgcag aagattgtat gagacttata gcatttttca ttgacacatt 5401 tattgatgaa aaccatagga tctacatgtt caaaagaatg gttgatgagt ttacatattc 5461 aggaagaaaa gtttcagacc tcctagaaat aatagcaaca tcaaagaaca gagttgattt 5521 cttaccaatt ctatatcgat ctggattatt ggaacaaaga gacttagaca gctacgatgc 5581 tttgaaatca agtggtcgac caacatggaa caaatggcaa acaaccagag cactggacat 5641 gggcaaaata gacctaagta tagacacaca tagaagttca attagaatta taggagaaga 5701 cagaaatttg cattatgcag aactatatct accatccata aattatgatt caatcacaag 5761 aagtggctac aaactgctaa atgctaaaca tggcttaaaa ttccagtcca tgtctgaagt 5821 tagtgtaaga aaagacgagt ggtatatcac atatcagagg aaatccagag acaactatgt 5881 ttacaaaata ttctacggca aaaaactgtt aaacccacta ccggaccacg acttgcgtta 5941 caataggaca acaaacccta tagtaccagt ctgtcatgtt atacctatgg ttagaccaga 6001 cattgatcgt attatgctgg aggacatgga cagcttaaac attgagaact tcaagattgg 6061 ggttttgaat acaggaatag gagagcaagc tagactcaga aggtgtatgt tacataaaat 6121 gaaaaacttt gaaggaccag acattaagag taaagttata aacttaacaa agttaatgaa 6181 agacaacact ctaatgagct tgaattacga caatgtttgt aatgtccatc tttcacaatt 6241 ttgtaaactt cttgattgca atggcaatga aggaacactg gatgatgcaa tgtacagttt 6301 ttctgacgag cctatggaac agacacaaat tgacgaaata gaatgcaccc caattttcaa 6361 agtccaatac agtgtacctg gtagtcgtta cttgaattat agaaatgcaa taaaggaatt 6421 gttatctaga gaaattagac aattcaggga agcttttacg ttagttggcg atgattttga 6481 ttcaccagag aatattggct atttggaaaa tataatctgc ataattgatc aattgcaaac 6541 taatgaatgg tctacaataa tgaagaaatg cattcatatc tgtttccttg catcaaacca 6601 agatcatgtc tttcatacat ttagcctaaa caaatatttt tttgaaggta acacaccagc 6661 ttcagggaga ttaaactgga gaaacttaaa gagttttatc ataagtctac cagaaattaa 6721 atccgctcct tggaggaata tatttagctc attcaaatta aaatgtattg cattattaga 6781 cagagaaatt gctaaagtcg aagtcaatca agacttttcc aagatattag cacgagaaga 6841 ccttagacaa agcttcttca acttcttcta aaatcactgt tagagcttaa agatctttat 6901 catactttta aaacttaaaa ttaat // LOCUS KM272187 5088 bp cRNA linear VRL 01-DEC-2014 DEFINITION Alajuela virus strain MARU 11079 segment M, complete sequence. ACCESSION KM272187 VERSION KM272187.1 KEYWORDS . SOURCE Alajuela virus ORGANISM Alajuela virus Viruses; ssRNA viruses; ssRNA negative-strand viruses; Bunyavirales; Peribunyaviridae; Orthobunyavirus. REFERENCE 1 (bases 1 to 5088) AUTHORS Nunes,M.R., Chiang,J.O., de Lima,C.P., Martins,L.C., Aragao Dias,A., Cardoso,J.F., Silva,S.P., Da Silva,D.E., Oliveira,L.F., Vasconcelos,J.M., Ferreira,J.P., Travassos da Rosa,A.P., Guzman,H., Tesh,R.B. and Vasconcelos,P.F. TITLE New Genome Sequences of Gamboa Viruses (Family Bunyaviridae, Genus Orthobunyavirus) Isolated in Panama and Argentina JOURNAL Genome Announc 2 (6) (2014) PUBMED 25414487 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5088) AUTHORS Nunes,M.R.T., Lima,C.P.S., Martins,L.C., Diniz Junior,J.A.P., Cardoso,J.F., Silva,S.P., Da Silva,D.E.A., Oliveira,L.F., Vasconcelos,J.M., Chiang,J.O., Travassos da Rosa,A.P.A., Guzman,H., Tesh,R. and Vasconcelos,P.F.C. TITLE Direct Submission JOURNAL Submitted (04-AUG-2014) Center for Technological Innovation, Evandro Chagas Institute, BR 316, Km 07, s/n, Ananindeua, Para 67.030-000, Brazil COMMENT ##Assembly-Data-START## Assembly Method :: Mira 4.0 Coverage :: 90 Sequencing Technology :: ION ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..5088 /organism="Alajuela virus" /mol_type="viral cRNA" /strain="MARU 11079" /host="Aedeomyia squamipennis" /db_xref="taxon:1552846" /segment="M" /country="Panama: Panama State" /lat_lon="9.13 N 79.70 W" /collection_date="09-Jan-1963" 5'UTR 1..42 CDS 43..4821 /codon_start=1 /product="polyprotein" /protein_id="AIS74643.1" /translation="MIHLIAIILATASAEPTRCFSGGSKIFEKTSNFAVSEVCLKDDV GLIKIQTDYHKNDTGIFATMSSWRKWTVTEWHSCKPRKVNMGSISVIEIDSNFTIKTA SYSCNKDCMITVDKEHATVLLQSTGLNHYELTGTTIKTGWFKSTATVPLDQTCEHIKI ICGLKSLQFHACFKQHMACVRFLHRSILLGYIASSICHNIELILMCCLIIFIFTILVI LTKTYICYILLPIFVPIAYSYGWIYNKSCKKCQLCGLAYHPFTKCGQNCVCGALFDTT ERMRIHRISGLCPGYKSMRTARVLCKNRGSALLLSIALGFLTVSFLTPIADAKTLESH EDDTKLFLHMVQNTTIDQPILYKQCYYRVHFCQTVIDHNKYRMLSRFVCSNQDLFMTL LLLPASYAAIQLIDFIVKTAIRLIKQRRWIKVSQDADENSYVEMNPISMNSTRTVFKI RKFSFNKPFFALSAAILVNSFLSVNGAMLPTPKTVYDINELPDDFRELHAQAGLLHII TYLNAMWTTMAAILVLSIMILLSKKQRKLLGLCAMYCEECDMYHSKRGIKYNGDFTNK CGKCTCGTVEDATGLTVHKLRLECLIKYKLKWFKTLLVFILCVYITKDMALLTAAEEI TDCLKKTELTGNCTGPFFKPSGCNGIASGKLGPEEIITLLKSKKAISSLDEPLIKDLP LEVGIAIKKINSVQDIHKKMVLEFAFLQRNCDYYSRFTGDSGYSQVSWRSYTQISMFD LCKNSQAAGTCKCLKIGNSCTKNDSLEDTSVEFYKEGNKIQHDHELFLSIFKLAFPGT AYAYVLNQTEQQNFEAVKNYLAAIQTKYPENYMLKSLMKVGSIIYKNLSSANLSSEHK EDLPKYIPVYHGNTRGRTGVNRHDKKLNQSNVREDGICINPKDIVCISPRSKMHAPIY TWCEKGTTVYIPNLDGLKLYRSALNSGVFCFGDKHCLIKPKMFDSKTAEDIFNNECLA SPHTEEVDQYSLGQLRCNIISYGRCFVDSKGEYWPVALCAGGFHFYASQGSVPEDAVD PSERCLGEECHLRRYPINPVSLSNCTYYDPKVRMNRVKESVHTDFESYKNSIIRRLAD DLTVHKFLKTSNLPYFNPNFKYITMSGVDTTEGIENAYIEFEIPASTGVAAGYNILAD NQIHIFDVIIYIKSAKTVAEYQWIYSTGPTITINTEHAEHCTGRCPSVIEAKKGWATF SKERTSNWGCEEFGCLAIDDGCVFGSCQDVIKPEANVYKKIGQEKTTAEICVSMNHDA YCTEIEATVPIISSSIEAQFKTVDAPVMPNLVLVRDHKLYRGQINDLGSFGKYCGNVQ VRNLTVLGQADVKFDYLCHAAQRKDIIVRKCLENNYASCKLLDLEEHFILDESESNVK LSDLGRLTGALKVKLYLGDFKYKSFSREIDVDATIECVGCYNCLKGIDCKLNLHTTVE ASCKIDTPCPASLSRIVIKPTIDEYAINMKCQKPLEGDNVLIKVCNAAIKTQIAISKK TEQIELSTGEQSTYIHEEDLRCSTWICKIKDEGFSFLLKPITDWLGTFTRPVLISFAV IFILLVLLYILIPVFAKIRDKLREIEKEYQKEARASRKHK" 3'UTR 4822..5088 ORIGIN 1 agtagtgtac taccgtgtta aacaaaatat tcaattctca aaatgattca cttgattgcc 61 ataattctgg ccacagcatc tgcagaacct acgagatgtt tctctggtgg ttcaaagatc 121 tttgagaaaa cttcaaactt tgcagtttct gaggtctgcc ttaaagatga tgttggcttg 181 attaagatac aaaccgatta ccataagaat gacacaggca tctttgcaac aatgagttct 241 tggaggaaat ggactgtgac agagtggcac agctgcaagc ctcggaaagt caacatgggc 301 tctatatcag ttattgaaat agatagcaat tttacaatta aaaccgccag ctactcctgc 361 aataaagact gcatgataac tgttgacaaa gagcatgcta cagtgttatt gcaaagcact 421 gggttgaacc attatgaatt aacagggact acaatcaaaa cgggatggtt taaatcaact 481 gccactgtac cattagacca gacttgcgaa cacatcaaaa ttatatgcgg cctgaaaagt 541 ttgcagttcc atgcttgctt caaacagcat atggcttgtg ttaggttctt acataggtct 601 attttactag gctatatagc ttcttcaatc tgtcataata ttgaattaat cttaatgtgt 661 tgcttaatta tctttatatt tactattttg gttatattaa caaagacgta tatatgttat 721 atactgctac ctatatttgt ccctatcgct tatagttatg gttggattta caacaagagc 781 tgcaaaaaat gtcaactgtg tggattagca tatcatcctt tcacaaagtg tggccaaaat 841 tgcgtatgtg gtgccttatt tgacactact gaaagaatga ggatacatag gatttccggt 901 ttatgtccag gatacaaatc aatgagaacc gccagagtcc tatgtaaaaa taggggttca 961 gcattacttc tatccatagc actaggattc ttaactgtat cgtttttaac acctatagct 1021 gacgcaaaga ccctggaaag tcatgaagat gatactaaac ttttcttaca tatggttcaa 1081 aatactacaa tagaccaacc tattttatat aagcagtgtt attatagagt tcatttttgt 1141 caaacagtaa tagaccacaa caagtataga atgttatcca gatttgtttg ttctaatcaa 1201 gatcttttta tgaccctcct actcttacca gcttcctatg cagcaataca acttattgat 1261 tttatagtta aaactgcaat tagattaata aaacagagga ggtggataaa agttagccaa 1321 gatgctgatg agaattccta tgtcgaaatg aatccaattt caatgaacag tactagaaca 1381 gtctttaaaa ttaggaagtt ttcatttaat aaaccatttt ttgcactatc agctgctata 1441 ttagtaaatt cttttctttc tgtgaatggg gcaatgctgc caacacctaa aactgtatat 1501 gatataaatg agcttcctga tgacttcagg gaactgcatg ctcaagcagg gttactacat 1561 atcataacat acttgaatgc aatgtggacc actatggctg cgatcctggt tctgtctatc 1621 atgatattgc tttcaaagaa gcagcgtaag ttacttgggc tctgtgcaat gtattgtgaa 1681 gaatgtgaca tgtatcatag caaacgagga atcaaatata atggcgattt cactaacaaa 1741 tgtgggaaat gtacatgcgg aactgttgaa gatgcaactg gactaacagt acacaaatta 1801 agattagagt gtttgattaa atataaatta aagtggttta aaaccttgtt ggtctttatt 1861 ctttgtgttt atataacaaa agatatggca ttgttaacag ctgctgagga aattactgat 1921 tgtctaaaaa aaacggaatt aacaggaaat tgcacaggtc cttttttcaa gcctagcgga 1981 tgcaatggta ttgcttctgg aaaacttgga cctgaagaaa tcataacctt attaaaatca 2041 aaaaaggcaa tttcaagttt agacgaacct ctaattaaag atcttcctct agaagttgga 2101 attgctatca aaaaaatcaa ttctgtacag gacatacata agaaaatggt tttagaattt 2161 gcatttctac aacggaactg tgactactac agcaggttta caggtgattc cggttattct 2221 caagtaagct ggaggtcata tacacagatt tccatgtttg acctttgtaa aaatagtcaa 2281 gcagcaggaa cttgtaagtg tttgaaaatt ggcaactcct gcacaaaaaa tgattcctta 2341 gaagatacat ctgtagaatt ttataaagag gggaataaga ttcaacatga ccacgaatta 2401 tttttgagca tttttaaatt agcttttcca gggacagctt atgcatatgt gctaaaccag 2461 actgaacaac agaattttga agctgtaaaa aattatttag ctgcaataca aacaaaatat 2521 ccagaaaatt atatgcttaa aagcttgatg aaagtaggat ctattattta caaaaatcta 2581 tcaagtgcta atttatcgtc agaacacaaa gaagaccttc caaaatacat acctgtctat 2641 catgggaata ctaggggtag aacaggagtt aatagacatg ataagaaact aaatcagagt 2701 aatgttagag aagatggcat ttgcattaac cctaaggata tagtttgtat atctccacgg 2761 tccaagatgc atgctccaat atacacctgg tgtgaaaaag gaacaacagt atatatcccg 2821 aatctagatg gacttaaact atatagatct gcattaaatt caggtgtctt ctgctttgga 2881 gataaacact gcttgattaa acctaaaatg tttgattcga aaactgcaga agatattttc 2941 aacaatgaat gtcttgcaag ccctcataca gaagaagtgg accagtactc attaggtcag 3001 ctgcgttgca acataatttc ctatggccga tgttttgtag actcaaaagg cgaatattgg 3061 cctgtagcat tatgtgcagg aggattccac ttttatgctt ctcaaggttc agttcctgaa 3121 gatgctgttg atcctagtga aagatgcctt ggagaggaat gccacctgcg gcgctatcca 3181 ataaaccctg tatccttaag caattgcaca tactatgatc caaaagtaag aatgaataga 3241 gttaaagaaa gtgtacatac tgactttgag tcttacaaga attccattat aagacgacta 3301 gctgatgacc taacagtaca taaattcctg aaaacttcta acctgccata ttttaaccca 3361 aactttaaat atataactat gtcaggggtt gatacaactg aaggcataga aaatgcatac 3421 atagaatttg aaatcccagc ttctactgga gttgctgcag gctataatat attagctgat 3481 aatcaaatac acatttttga tgtcataatt tatatcaagt ctgcaaagac agtggctgaa 3541 taccaatgga tttacagcac tggtcctacg atcacaataa acactgagca tgcagagcat 3601 tgtacaggga gatgcccttc tgtaatagaa gcaaaaaagg gctgggcaac cttcagtaaa 3661 gaacgaacca gcaattgggg atgcgaagaa tttggatgct tggcaataga tgatggctgt 3721 gtttttgggt catgtcaaga tgtgataaag cctgaagcaa atgtatacaa gaagataggg 3781 caagaaaaaa caactgcaga gatttgtgtt tcaatgaatc atgatgcata ctgcacagaa 3841 atagaagcaa cggtgcctat aatttctagt tcaatagagg cacaatttaa gactgttgat 3901 gctccagtaa tgcccaactt agtacttgtt agggatcaca aattatatag agggcaaatt 3961 aatgatctag gcagttttgg caaatattgt ggaaatgttc aggtcagaaa tttaacagtg 4021 ttgggacagg cagatgtaaa atttgattac ctttgtcatg ctgctcaaag gaaggatatt 4081 atagtaagga agtgccttga gaataattat gccagttgta aattgctaga tctagaagag 4141 cattttatac tggatgagtc agaaagcaat gtcaagttga gtgatcttgg aaggcttact 4201 ggagcattaa aagtaaagct atacctgggt gatttcaagt acaaatcatt tagcagggaa 4261 atagatgtgg atgccacaat agaatgtgtt ggctgttaca attgtcttaa aggaattgat 4321 tgcaaactga atttacacac tacagtagaa gctagctgta agatagatac accatgtcca 4381 gctagcttga gcaggattgt aatcaaacct acaattgatg aatatgcaat caacatgaag 4441 tgccaaaagc ctctagaagg agacaatgta ttaattaaag tttgtaatgc agcgattaaa 4501 acacaaattg ctatttcaaa aaagacagag caaattgaat tgtcaacagg agaacaatcc 4561 acttatatcc atgaggagga tctaaggtgt tcaacttgga tatgcaaaat aaaagatgaa 4621 gggttttcat ttttactaaa gccaataaca gattggttag gaacattcac taggcctgtt 4681 ttaataagtt ttgcagtaat atttatttta ctggtacttt tatacatttt aataccagtt 4741 tttgccaaaa ttagagataa attaagggaa atagaaaagg agtatcaaaa agaagctagg 4801 gccagtagaa aacataaata agctatagaa cacacgaggc aaatccagaa cataggcatt 4861 tcaaatgggg acaagccaaa actagaacaa acctagaaag attggaaaat ttttttttta 4921 aaaatcatat ttgggttagg gtcaaatttc ggggatcgca tttgggtcgg ggtcaaaatt 4981 tcaaacagca catgttatat tatctagtat attttcagaa gtttatataa tatttttgtt 5041 ttaaacacgg tagcacacta ctcaaaatga ttcacttgat tgccaata // LOCUS KM272188 1153 bp cRNA linear VRL 01-DEC-2014 DEFINITION Alajuela virus strain MARU 11079 segment S, complete sequence. ACCESSION KM272188 VERSION KM272188.1 KEYWORDS . SOURCE Alajuela virus ORGANISM Alajuela virus Viruses; ssRNA viruses; ssRNA negative-strand viruses; Bunyavirales; Peribunyaviridae; Orthobunyavirus. REFERENCE 1 (bases 1 to 1153) AUTHORS Nunes,M.R., Chiang,J.O., de Lima,C.P., Martins,L.C., Aragao Dias,A., Cardoso,J.F., Silva,S.P., Da Silva,D.E., Oliveira,L.F., Vasconcelos,J.M., Ferreira,J.P., Travassos da Rosa,A.P., Guzman,H., Tesh,R.B. and Vasconcelos,P.F. TITLE New Genome Sequences of Gamboa Viruses (Family Bunyaviridae, Genus Orthobunyavirus) Isolated in Panama and Argentina JOURNAL Genome Announc 2 (6) (2014) PUBMED 25414487 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1153) AUTHORS Nunes,M.R.T., Lima,C.P.S., Martins,L.C., Diniz Junior,J.A.P., Cardoso,J.F., Silva,S.P., Da Silva,D.E.A., Oliveira,L.F., Vasconcelos,J.M., Chiang,J.O., Travassos da Rosa,A.P.A., Guzman,H., Tesh,R. and Vasconcelos,P.F.C. TITLE Direct Submission JOURNAL Submitted (04-AUG-2014) Center for Technological Innovation, Evandro Chagas Institute, BR 316, Km 07, s/n, Ananindeua, Para 67.030-000, Brazil COMMENT ##Assembly-Data-START## Assembly Method :: Mira 4.0 Coverage :: 145 Sequencing Technology :: ION ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1153 /organism="Alajuela virus" /mol_type="viral cRNA" /strain="MARU 11079" /host="Aedeomyia squamipennis" /db_xref="taxon:1552846" /segment="S" /country="Panama: Panama State" /lat_lon="9.13 N 79.70 W" /collection_date="09-Jan-1963" 5'UTR 1..86 gene 87..803 /gene="N" CDS 87..803 /gene="N" /codon_start=1 /product="structural nucleocapsid protein" /protein_id="AIS74652.1" /translation="MSDSLYVFDDDSTASSSTYDPTQEYNVFISTHGDQLTPANIKCF FLHARTAKARLAKDPAERRTLTFGSWKVEVVNNHYRRATPVTVQDHDNTLHRISGYLA LYCLQTSSQNKQNFERIKSVVINPISESMGINWQHGAMIYLSTLPGAEMFLTEFQLFP LAFAVVRVKKNLASPETVKKVLRQRYDGKLPGEWMNSELEKVKTAITKVEALHKTFVG VTARMIEFFTALGINLDMRR" gene 115..507 /gene="NSs" CDS 115..507 /gene="NSs" /codon_start=1 /product="non-structural protein" /protein_id="AIS74653.1" /translation="MIRRQALALMIQRRNTMSLLVLTGTSLLQQTLNVSSCMHVQPRL VWQRTRRNAERLLLDLGRLRLLITITEEPLRLQCRTMIIPCTAFPDILPCTACRPAPR ISRTLSESSQSSSTRSLSPWGSTGSMEQ" 3'UTR 804..1153 ORIGIN 1 agtagtgtac tcctcagtaa actattctta aaaatactac aaagttttgc aaacctggag 61 atcctctttg agtccgacga agcaagatgt ctgactctct atacgtattt gacgatgatt 121 cgacggcaag ctctagcact tatgatccaa cgcaggaata caatgtcttt attagtactc 181 acggggacca gcttactcca gcaaacatta aatgtttctt cctgcatgca cgtacagcca 241 aggctcgtct ggcaaaggac ccggcggaac gcagaacgct tacttttgga tcttggaagg 301 ttgaggttgt taataaccat tacagaagag ccactccggt tacagtgcag gaccatgata 361 ataccttgca ccgcatttcc ggatatcttg ccctgtactg cctgcagacc agctcccaga 421 ataagcagaa ctttgagcga atcaagtcag tcgtcatcaa cccgatctct gagtccatgg 481 ggatcaactg gcagcatgga gcaatgattt atctgtccac acttcccgga gcagaaatgt 541 ttctcactga atttcaactg tttccacttg catttgcagt tgtaagagta aaaaagaacc 601 tggcaagtcc cgagacagtg aagaaggtgt tgagacagag atatgacggc aaattgcctg 661 gagagtggat gaattcagag ttagaaaagg ttaagaccgc aatcacaaag gttgaagcac 721 tccacaagac ctttgttgga gttaccgcca gaatgattga gttcttcact gctcttggaa 781 ttaaccttga tatgagacgc taatttcatt ctgaatttcc agtacaattt cacttttatt 841 tccaattttt gttttacttt atatatttta ttacttgact atattttatt atatctttat 901 tttatccata tataaccaat atataatcca tatatcccaa tatgtaatct aaataccaat 961 tatatatata tcgatagtta atcattatta tatccagtta tatttagaaa tcccagtgta 1021 ttcaattata cttctatatt tgcaatattc aataggattg ttaaatttag ataaggacta 1081 acaatactaa cattttcata ttaagatttt attaactcac tagattagtt aggactcaaa 1141 agcagctgtt aaa //