locus-tag class description D3M96_00005 PF11638 DnaA N-terminal domain D3M96_00005 PF08299 Bacterial dnaA protein helix-turn-helix D3M96_00005 PF00308 Bacterial dnaA protein D3M96_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain D3M96_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain D3M96_00010 PF02767 DNA polymerase III beta subunit, central domain D3M96_00015 PF01751 Toprim domain D3M96_00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_00015 PF18053 DNA gyrase B subunit insert domain D3M96_00015 PF00986 DNA gyrase B subunit, carboxyl terminus D3M96_00015 PF00204 DNA gyrase B D3M96_00040 PF01479 S4 domain D3M96_00040 PF00849 RNA pseudouridylate synthase D3M96_00045 PF07729 FCD domain D3M96_00045 PF00392 Bacterial regulatory proteins, gntR family D3M96_00050 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_00060 PF00175 Oxidoreductase NAD-binding domain D3M96_00060 PF00111 2Fe-2S iron-sulfur cluster binding domain D3M96_00070 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D3M96_00070 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D3M96_00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_00075 PF03466 LysR substrate binding domain D3M96_00085 PF03480 Bacterial extracellular solute-binding protein, family 7 D3M96_00095 PF02653 Branched-chain amino acid transport system / permease component D3M96_00100 PF11862 Domain of unknown function (DUF3382) D3M96_00100 PF02653 Branched-chain amino acid transport system / permease component D3M96_00105 PF00005 ABC transporter D3M96_00110 PF13193 AMP-binding enzyme C-terminal domain D3M96_00110 PF00501 AMP-binding enzyme D3M96_00120 PF00561 alpha/beta hydrolase fold D3M96_00120 PF00364 Biotin-requiring enzyme D3M96_00125 PF00155 Aminotransferase class I and II D3M96_00125 PF00392 Bacterial regulatory proteins, gntR family D3M96_00130 PF00378 Enoyl-CoA hydratase/isomerase D3M96_00135 PF17645 Arylmalonate decarboxylase D3M96_00140 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_00150 PF00892 EamA-like transporter family D3M96_00155 PF03466 LysR substrate binding domain D3M96_00155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_00165 PF00005 ABC transporter D3M96_00165 PF08402 TOBE domain D3M96_00185 PF02492 CobW/HypB/UreG, nucleotide-binding domain D3M96_00185 PF07683 Cobalamin synthesis protein cobW C-terminal domain D3M96_00190 PF13823 Alcohol dehydrogenase GroES-associated D3M96_00190 PF00107 Zinc-binding dehydrogenase D3M96_00190 PF08240 Alcohol dehydrogenase GroES-like domain D3M96_00195 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_00220 PF00884 Sulfatase D3M96_00220 PF16347 Domain of unknown function (DUF4976) D3M96_00230 PF01047 MarR family D3M96_00245 PF12802 MarR family D3M96_00255 PF01494 FAD binding domain D3M96_00260 PF07883 Cupin domain D3M96_00265 PF01557 Fumarylacetoacetate (FAA) hydrolase family D3M96_00270 PF00795 Carbon-nitrogen hydrolase D3M96_00275 PF04199 Putative cyclase D3M96_00280 PF00175 Oxidoreductase NAD-binding domain D3M96_00280 PF00111 2Fe-2S iron-sulfur cluster binding domain D3M96_00280 PF00970 Oxidoreductase FAD-binding domain D3M96_00285 PF00355 Rieske [2Fe-2S] domain D3M96_00285 PF00848 Ring hydroxylating alpha subunit (catalytic domain) D3M96_00290 PF00866 Ring hydroxylating beta subunit D3M96_00295 PF00501 AMP-binding enzyme D3M96_00295 PF13193 AMP-binding enzyme C-terminal domain D3M96_00320 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_00350 PF01613 Flavin reductase like domain D3M96_00360 PF14525 AraC-binding-like domain D3M96_00360 PF12833 Helix-turn-helix domain D3M96_00365 PF01613 Flavin reductase like domain D3M96_00370 PF00005 ABC transporter D3M96_00380 PF02261 Aspartate decarboxylase D3M96_00385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3M96_00385 PF00005 ABC transporter D3M96_00390 PF00005 ABC transporter D3M96_00390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3M96_00395 PF12911 N-terminal TM domain of oligopeptide transport permease C D3M96_00395 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_00405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3M96_00410 PF11799 impB/mucB/samB family C-terminal domain D3M96_00410 PF00817 impB/mucB/samB family D3M96_00415 PF00202 Aminotransferase class-III D3M96_00420 PF00561 alpha/beta hydrolase fold D3M96_00430 PF12833 Helix-turn-helix domain D3M96_00430 PF14525 AraC-binding-like domain D3M96_00450 PF03466 LysR substrate binding domain D3M96_00450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_00455 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D3M96_00455 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain D3M96_00460 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_00475 PF01274 Malate synthase D3M96_00485 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus D3M96_00485 PF01048 Phosphorylase superfamily D3M96_00495 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_00510 PF00205 Thiamine pyrophosphate enzyme, central domain D3M96_00510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3M96_00510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3M96_00515 PF03480 Bacterial extracellular solute-binding protein, family 7 D3M96_00525 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_00540 PF01131 DNA topoisomerase D3M96_00540 PF01751 Toprim domain D3M96_00550 PF04361 Protein of unknown function (DUF494) D3M96_00555 PF00749 tRNA synthetases class I (E and Q), catalytic domain D3M96_00560 PF00364 Biotin-requiring enzyme D3M96_00560 PF02785 Biotin carboxylase C-terminal domain D3M96_00560 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3M96_00560 PF00289 Biotin carboxylase, N-terminal domain D3M96_00565 PF01039 Carboxyl transferase domain D3M96_00570 PF00108 Thiolase, N-terminal domain D3M96_00570 PF02803 Thiolase, C-terminal domain D3M96_00575 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) D3M96_00580 PF02770 Acyl-CoA dehydrogenase, middle domain D3M96_00580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3M96_00580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3M96_00585 PF00376 MerR family regulatory protein D3M96_00585 PF09278 MerR, DNA binding D3M96_00595 PF01053 Cys/Met metabolism PLP-dependent enzyme D3M96_00600 PF01323 DSBA-like thioredoxin domain D3M96_00600 PF00085 Thioredoxin D3M96_00610 PF05746 DALR anticodon binding domain D3M96_00610 PF03485 Arginyl tRNA synthetase N terminal domain D3M96_00610 PF00750 tRNA synthetases class I (R) D3M96_00640 PF08502 LeuA allosteric (dimerisation) domain D3M96_00640 PF00682 HMGL-like D3M96_00650 PF00309 Sigma-54 factor, Activator interacting domain (AID) D3M96_00650 PF04963 Sigma-54 factor, core binding domain D3M96_00650 PF04552 Sigma-54, DNA binding domain D3M96_00655 PF00593 TonB dependent receptor D3M96_00655 PF07715 TonB-dependent Receptor Plug Domain D3M96_00665 PF00210 Ferritin-like domain D3M96_00675 PF03144 Elongation factor Tu domain 2 D3M96_00675 PF00009 Elongation factor Tu GTP binding domain D3M96_00675 PF16658 Class II release factor RF3, C-terminal domain D3M96_00680 PF01810 LysE type translocator D3M96_00685 PF00271 Helicase conserved C-terminal domain D3M96_00685 PF00270 DEAD/DEAH box helicase D3M96_00695 PF04536 TPM domain D3M96_00710 PF01926 50S ribosome-binding GTPase D3M96_00710 PF12631 MnmE helical domain D3M96_00710 PF10396 GTP-binding protein TrmE N-terminus D3M96_00725 PF01425 Amidase D3M96_00730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_00730 PF03466 LysR substrate binding domain D3M96_00740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_00740 PF03466 LysR substrate binding domain D3M96_00760 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_00770 PF02405 Permease MlaE D3M96_00775 PF00005 ABC transporter D3M96_00795 PF13419 Haloacid dehalogenase-like hydrolase D3M96_00800 PF03480 Bacterial extracellular solute-binding protein, family 7 D3M96_00810 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_00830 PF00501 AMP-binding enzyme D3M96_00830 PF13193 AMP-binding enzyme C-terminal domain D3M96_00835 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_00845 PF07729 FCD domain D3M96_00845 PF00392 Bacterial regulatory proteins, gntR family D3M96_00850 PF03466 LysR substrate binding domain D3M96_00850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_00855 PF01266 FAD dependent oxidoreductase D3M96_00865 PF02646 RmuC family D3M96_00875 PF00990 Diguanylate cyclase, GGDEF domain D3M96_00875 PF03707 Bacterial signalling protein N terminal repeat D3M96_00875 PF00563 EAL domain D3M96_00880 PF00708 Acylphosphatase D3M96_00890 PF16868 NMT1-like family D3M96_00900 PF00849 RNA pseudouridylate synthase D3M96_00905 PF00710 Asparaginase, N-terminal D3M96_00905 PF17763 Glutaminase/Asparaginase C-terminal domain D3M96_00910 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_00915 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_00920 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3M96_00925 PF00005 ABC transporter D3M96_00930 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D3M96_00930 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D3M96_00935 PF01168 Alanine racemase, N-terminal domain D3M96_00940 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_00950 PF00501 AMP-binding enzyme D3M96_00955 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3M96_00955 PF00005 ABC transporter D3M96_00960 PF02653 Branched-chain amino acid transport system / permease component D3M96_00975 PF00005 ABC transporter D3M96_00985 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3M96_00995 PF00682 HMGL-like D3M96_01000 PF17782 DprA winged helix domain D3M96_01000 PF02481 DNA recombination-mediator protein A D3M96_01005 PF01327 Polypeptide deformylase D3M96_01010 PF00551 Formyl transferase D3M96_01010 PF02911 Formyl transferase, C-terminal domain D3M96_01015 PF00892 EamA-like transporter family D3M96_01020 PF01425 Amidase D3M96_01030 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_01045 PF07286 Protein of unknown function (DUF1445) D3M96_01050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_01050 PF03466 LysR substrate binding domain D3M96_01055 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D3M96_01060 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D3M96_01060 PF00534 Glycosyl transferases group 1 D3M96_01065 PF00313 'Cold-shock' DNA-binding domain D3M96_01070 PF00483 Nucleotidyl transferase D3M96_01075 PF03309 Type III pantothenate kinase D3M96_01080 PF02237 Biotin protein ligase C terminal domain D3M96_01080 PF03099 Biotin/lipoate A/B protein ligase family D3M96_01090 PF07943 Penicillin-binding protein 5, C-terminal domain D3M96_01090 PF00768 D-alanyl-D-alanine carboxypeptidase D3M96_01095 PF01063 Amino-transferase class IV D3M96_01100 PF04359 Protein of unknown function (DUF493) D3M96_01105 PF03099 Biotin/lipoate A/B protein ligase family D3M96_01110 PF00378 Enoyl-CoA hydratase/isomerase D3M96_01115 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family D3M96_01115 PF04055 Radical SAM superfamily D3M96_01125 PF03167 Uracil DNA glycosylase superfamily D3M96_01205 PF00218 Indole-3-glycerol phosphate synthase D3M96_01210 PF00591 Glycosyl transferase family, a/b domain D3M96_01210 PF02885 Glycosyl transferase family, helical bundle domain D3M96_01215 PF00117 Glutamine amidotransferase class-I D3M96_01220 PF00425 chorismate binding enzyme D3M96_01220 PF04715 Anthranilate synthase component I, N terminal region D3M96_01225 PF13419 Haloacid dehalogenase-like hydrolase D3M96_01240 PF04379 ApaG domain D3M96_01250 PF01494 FAD binding domain D3M96_01255 PF13098 Thioredoxin-like domain D3M96_01255 PF10411 Disulfide bond isomerase protein N-terminus D3M96_01265 PF00672 HAMP domain D3M96_01265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3M96_01265 PF17200 Single Cache domain 2 D3M96_01275 PF00106 short chain dehydrogenase D3M96_01280 PF00550 Phosphopantetheine attachment site D3M96_01280 PF00857 Isochorismatase family D3M96_01285 PF00425 chorismate binding enzyme D3M96_01295 PF05977 Transmembrane secretion effector D3M96_01300 PF13193 AMP-binding enzyme C-terminal domain D3M96_01300 PF00501 AMP-binding enzyme D3M96_01300 PF00668 Condensation domain D3M96_01300 PF00550 Phosphopantetheine attachment site D3M96_01300 PF00975 Thioesterase domain D3M96_01305 PF00857 Isochorismatase family D3M96_01305 PF00550 Phosphopantetheine attachment site D3M96_01310 PF00501 AMP-binding enzyme D3M96_01310 PF13193 AMP-binding enzyme C-terminal domain D3M96_01320 PF00005 ABC transporter D3M96_01325 PF00005 ABC transporter D3M96_01325 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3M96_01340 PF13458 Periplasmic binding protein D3M96_01355 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_01360 PF00005 ABC transporter D3M96_01370 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D3M96_01370 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D3M96_01390 PF00005 ABC transporter D3M96_01395 PF01032 FecCD transport family D3M96_01400 PF00756 Putative esterase D3M96_01405 PF00271 Helicase conserved C-terminal domain D3M96_01405 PF00270 DEAD/DEAH box helicase D3M96_01410 PF07690 Major Facilitator Superfamily D3M96_01420 PF03466 LysR substrate binding domain D3M96_01420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_01430 PF03471 Transporter associated domain D3M96_01430 PF03741 Integral membrane protein TerC family D3M96_01445 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D3M96_01445 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D3M96_01455 PF01063 Amino-transferase class IV D3M96_01460 PF04235 Protein of unknown function (DUF418) D3M96_01470 PF13673 Acetyltransferase (GNAT) domain D3M96_01485 PF01613 Flavin reductase like domain D3M96_01490 PF01546 Peptidase family M20/M25/M40 D3M96_01490 PF07687 Peptidase dimerisation domain D3M96_01495 PF01979 Amidohydrolase family D3M96_01500 PF01979 Amidohydrolase family D3M96_01505 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_01510 PF00005 ABC transporter D3M96_01520 PF03466 LysR substrate binding domain D3M96_01520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_01525 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3M96_01530 PF00005 ABC transporter D3M96_01535 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_01540 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_01550 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D3M96_01550 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D3M96_01555 PF00171 Aldehyde dehydrogenase family D3M96_01565 PF06433 Methylamine dehydrogenase heavy chain (MADH) D3M96_01575 PF00578 AhpC/TSA family D3M96_01580 PF02975 Methylamine dehydrogenase, L chain D3M96_01590 PF12833 Helix-turn-helix domain D3M96_01590 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term D3M96_01600 PF01208 Uroporphyrinogen decarboxylase (URO-D) D3M96_01605 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D3M96_01605 PF17764 3′ DNA-binding domain (3′BD) D3M96_01605 PF00271 Helicase conserved C-terminal domain D3M96_01605 PF18074 Primosomal protein N C-terminal domain D3M96_01605 PF00270 DEAD/DEAH box helicase D3M96_01610 PF00580 UvrD/REP helicase N-terminal domain D3M96_01610 PF13361 UvrD-like helicase C-terminal domain D3M96_01625 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3M96_01625 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D3M96_01630 PF01645 Conserved region in glutamate synthase D3M96_01630 PF00310 Glutamine amidotransferases class-II D3M96_01630 PF01493 GXGXG motif D3M96_01630 PF04898 Glutamate synthase central domain D3M96_01635 PF00378 Enoyl-CoA hydratase/isomerase D3M96_01645 PF02515 CoA-transferase family III D3M96_01650 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D3M96_01650 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain D3M96_01650 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D3M96_01655 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3M96_01670 PF07715 TonB-dependent Receptor Plug Domain D3M96_01670 PF00593 TonB dependent receptor D3M96_01675 PF04262 Glutamate-cysteine ligase D3M96_01685 PF00196 Bacterial regulatory proteins, luxR family D3M96_01685 PF03472 Autoinducer binding domain D3M96_01690 PF00561 alpha/beta hydrolase fold D3M96_01700 PF07690 Major Facilitator Superfamily D3M96_01705 PF03458 UPF0126 domain D3M96_01710 PF04172 LrgB-like family D3M96_01720 PF01042 Endoribonuclease L-PSP D3M96_01725 PF01042 Endoribonuclease L-PSP D3M96_01760 PF01810 LysE type translocator D3M96_01770 PF02272 DHHA1 domain D3M96_01770 PF01411 tRNA synthetases class II (A) D3M96_01770 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D3M96_01775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_01775 PF03466 LysR substrate binding domain D3M96_01785 PF00202 Aminotransferase class-III D3M96_01800 PF01923 Cobalamin adenosyltransferase D3M96_01815 PF07724 AAA domain (Cdc48 subfamily) D3M96_01815 PF00004 ATPase family associated with various cellular activities (AAA) D3M96_01820 PF00227 Proteasome subunit D3M96_01825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_01825 PF03466 LysR substrate binding domain D3M96_01840 PF01258 Prokaryotic dksA/traR C4-type zinc finger D3M96_01845 PF02492 CobW/HypB/UreG, nucleotide-binding domain D3M96_01845 PF07683 Cobalamin synthesis protein cobW C-terminal domain D3M96_01850 PF01475 Ferric uptake regulator family D3M96_01855 PF00005 ABC transporter D3M96_01860 PF00950 ABC 3 transport family D3M96_01865 PF01297 Zinc-uptake complex component A periplasmic D3M96_01870 PF02899 Phage integrase, N-terminal SAM-like domain D3M96_01870 PF00589 Phage integrase family D3M96_01880 PF01678 Diaminopimelate epimerase D3M96_01885 PF03279 Bacterial lipid A biosynthesis acyltransferase D3M96_01895 PF02773 S-adenosylmethionine synthetase, C-terminal domain D3M96_01895 PF02772 S-adenosylmethionine synthetase, central domain D3M96_01895 PF00438 S-adenosylmethionine synthetase, N-terminal domain D3M96_01900 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain D3M96_01900 PF05221 S-adenosyl-L-homocysteine hydrolase D3M96_01905 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV D3M96_01910 PF02219 Methylenetetrahydrofolate reductase D3M96_01920 PF14718 Soluble lytic murein transglycosylase L domain D3M96_01920 PF01464 Transglycosylase SLT domain D3M96_01925 PF12627 Probable RNA and SrmB- binding site of polymerase A D3M96_01925 PF01743 Poly A polymerase head domain D3M96_01940 PF01795 MraW methylase family D3M96_01945 PF01925 Sulfite exporter TauE/SafE D3M96_01950 PF00311 Phosphoenolpyruvate carboxylase D3M96_01955 PF00920 Dehydratase family D3M96_01965 PF03480 Bacterial extracellular solute-binding protein, family 7 D3M96_01975 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_01980 PF01425 Amidase D3M96_01990 PF02540 NAD synthase D3M96_02000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3M96_02000 PF02770 Acyl-CoA dehydrogenase, middle domain D3M96_02000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3M96_02005 PF02515 CoA-transferase family III D3M96_02010 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_02020 PF01594 AI-2E family transporter D3M96_02030 PF00589 Phage integrase family D3M96_02165 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_02170 PF01047 MarR family D3M96_02175 PF00175 Oxidoreductase NAD-binding domain D3M96_02175 PF00111 2Fe-2S iron-sulfur cluster binding domain D3M96_02175 PF00970 Oxidoreductase FAD-binding domain D3M96_02185 PF07715 TonB-dependent Receptor Plug Domain D3M96_02185 PF00593 TonB dependent receptor D3M96_02190 PF01497 Periplasmic binding protein D3M96_02195 PF00005 ABC transporter D3M96_02200 PF01032 FecCD transport family D3M96_02205 PF01032 FecCD transport family D3M96_02210 PF00005 ABC transporter D3M96_02215 PF00005 ABC transporter D3M96_02215 PF00664 ABC transporter transmembrane region D3M96_02215 PF08021 Siderophore-interacting FAD-binding domain D3M96_02215 PF04954 Siderophore-interacting protein D3M96_02220 PF01565 FAD binding domain D3M96_02220 PF09330 D-lactate dehydrogenase, membrane binding D3M96_02225 PF01070 FMN-dependent dehydrogenase D3M96_02230 PF00392 Bacterial regulatory proteins, gntR family D3M96_02230 PF07729 FCD domain D3M96_02235 PF02652 L-lactate permease D3M96_02245 PF00392 Bacterial regulatory proteins, gntR family D3M96_02245 PF07702 UTRA domain D3M96_02250 PF01037 Lrp/AsnC ligand binding domain D3M96_02255 PF00266 Aminotransferase class-V D3M96_02260 PF00324 Amino acid permease D3M96_02265 PF07969 Amidohydrolase family D3M96_02270 PF08220 DeoR-like helix-turn-helix domain D3M96_02270 PF00455 DeoR C terminal sensor domain D3M96_02275 PF00005 ABC transporter D3M96_02275 PF08402 TOBE domain D3M96_02280 PF13416 Bacterial extracellular solute-binding protein D3M96_02285 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_02290 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_02300 PF07715 TonB-dependent Receptor Plug Domain D3M96_02300 PF07660 Secretin and TonB N terminus short domain D3M96_02300 PF00593 TonB dependent receptor D3M96_02305 PF03741 Integral membrane protein TerC family D3M96_02310 PF05698 Bacterial trigger factor protein (TF) C-terminus D3M96_02325 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 D3M96_02335 PF01966 HD domain D3M96_02340 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_02345 PF13378 Enolase C-terminal domain-like D3M96_02345 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D3M96_02350 PF01479 S4 domain D3M96_02355 PF07690 Major Facilitator Superfamily D3M96_02360 PF00440 Bacterial regulatory proteins, tetR family D3M96_02370 PF01425 Amidase D3M96_02375 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_02380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_02380 PF03466 LysR substrate binding domain D3M96_02405 PF00183 Hsp90 protein D3M96_02405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_02410 PF01510 N-acetylmuramoyl-L-alanine amidase D3M96_02425 PF00448 SRP54-type protein, GTPase domain D3M96_02425 PF02881 SRP54-type protein, helical bundle domain D3M96_02425 PF02978 Signal peptide binding domain D3M96_02440 PF00872 Transposase, Mutator family D3M96_02445 PF01476 LysM domain D3M96_02445 PF04972 BON domain D3M96_02450 PF05690 Thiazole biosynthesis protein ThiG D3M96_02450 PF02597 ThiS family D3M96_02455 PF00561 alpha/beta hydrolase fold D3M96_02460 PF02390 Putative methyltransferase D3M96_02470 PF14659 Phage integrase, N-terminal SAM-like domain D3M96_02470 PF13356 Arm DNA-binding domain D3M96_02470 PF00589 Phage integrase family D3M96_02485 PF03466 LysR substrate binding domain D3M96_02485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_02490 PF08334 Type II secretion system (T2SS), protein G D3M96_02490 PF07963 Prokaryotic N-terminal methylation motif D3M96_02510 PF00263 Bacterial type II and III secretion system protein D3M96_02510 PF03958 Bacterial type II/III secretion system short domain D3M96_02520 PF00437 Type II/IV secretion system protein D3M96_02525 PF00482 Type II secretion system (T2SS), protein F D3M96_02530 PF12849 PBP superfamily domain D3M96_02540 PF12849 PBP superfamily domain D3M96_02545 PF12849 PBP superfamily domain D3M96_02555 PF06750 Bacterial Peptidase A24 N-terminal domain D3M96_02555 PF01478 Type IV leader peptidase family D3M96_02565 PF02501 Type II secretion system (T2SS), protein I D3M96_02565 PF07963 Prokaryotic N-terminal methylation motif D3M96_02590 PF01618 MotA/TolQ/ExbB proton channel family D3M96_02595 PF02472 Biopolymer transport protein ExbD/TolR D3M96_02620 PF00639 PPIC-type PPIASE domain D3M96_02620 PF09312 SurA N-terminal domain D3M96_02625 PF02706 Chain length determinant protein D3M96_02680 PF07690 Major Facilitator Superfamily D3M96_02685 PF02627 Carboxymuconolactone decarboxylase family D3M96_02690 PF00248 Aldo/keto reductase family D3M96_02775 PF04002 RadC-like JAB domain D3M96_02830 PF12728 Helix-turn-helix domain D3M96_02830 PF02661 Fic/DOC family D3M96_02975 PF00145 C-5 cytosine-specific DNA methylase D3M96_02985 PF01751 Toprim domain D3M96_02985 PF01131 DNA topoisomerase D3M96_03005 PF00436 Single-strand binding protein family D3M96_03040 PF13614 AAA domain D3M96_03055 PF13356 Arm DNA-binding domain D3M96_03055 PF14659 Phage integrase, N-terminal SAM-like domain D3M96_03055 PF00589 Phage integrase family D3M96_03070 PF13614 AAA domain D3M96_03105 PF00436 Single-strand binding protein family D3M96_03110 PF01131 DNA topoisomerase D3M96_03110 PF01751 Toprim domain D3M96_03245 PF01381 Helix-turn-helix D3M96_03300 PF04002 RadC-like JAB domain D3M96_03355 PF04055 Radical SAM superfamily D3M96_03360 PF07724 AAA domain (Cdc48 subfamily) D3M96_03360 PF10431 C-terminal, D2-small domain, of ClpB protein D3M96_03360 PF17871 AAA lid domain D3M96_03360 PF00004 ATPase family associated with various cellular activities (AAA) D3M96_03360 PF02861 Clp amino terminal domain, pathogenicity island component D3M96_03410 PF02661 Fic/DOC family D3M96_03410 PF13784 Fic/DOC family N-terminal D3M96_03455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_03455 PF03466 LysR substrate binding domain D3M96_03500 PF03466 LysR substrate binding domain D3M96_03500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_03505 PF01699 Sodium/calcium exchanger protein D3M96_03510 PF00072 Response regulator receiver domain D3M96_03510 PF00990 Diguanylate cyclase, GGDEF domain D3M96_03515 PF01323 DSBA-like thioredoxin domain D3M96_03520 PF00083 Sugar (and other) transporter D3M96_03520 PF07690 Major Facilitator Superfamily D3M96_03525 PF00596 Class II Aldolase and Adducin N-terminal domain D3M96_03540 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D3M96_03550 PF07883 Cupin domain D3M96_03550 PF05899 Protein of unknown function (DUF861) D3M96_03555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_03555 PF03466 LysR substrate binding domain D3M96_03560 PF16916 Dimerisation domain of Zinc Transporter D3M96_03560 PF01545 Cation efflux family D3M96_03575 PF10609 NUBPL iron-transfer P-loop NTPase D3M96_03590 PF00692 dUTPase D3M96_03595 PF01276 Orn/Lys/Arg decarboxylase, major domain D3M96_03595 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain D3M96_03595 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain D3M96_03605 PF01597 Glycine cleavage H-protein D3M96_03610 PF00186 Dihydrofolate reductase D3M96_03615 PF00303 Thymidylate synthase D3M96_03620 PF02566 OsmC-like protein D3M96_03625 PF00115 Cytochrome C and Quinol oxidase polypeptide I D3M96_03650 PF03232 Ubiquinone biosynthesis protein COQ7 D3M96_03655 PF02887 Pyruvate kinase, alpha/beta domain D3M96_03655 PF00224 Pyruvate kinase, barrel domain D3M96_03660 PF03928 Haem-degrading D3M96_03665 PF05161 MOFRL family D3M96_03665 PF13660 Domain of unknown function (DUF4147) D3M96_03670 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3M96_03670 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3M96_03675 PF01261 Xylose isomerase-like TIM barrel D3M96_03680 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3M96_03680 PF00205 Thiamine pyrophosphate enzyme, central domain D3M96_03680 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3M96_03685 PF03466 LysR substrate binding domain D3M96_03685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_03695 PF00860 Permease family D3M96_03700 PF01361 Tautomerase enzyme D3M96_03705 PF00596 Class II Aldolase and Adducin N-terminal domain D3M96_03710 PF04115 Ureidoglycolate lyase D3M96_03715 PF09349 OHCU decarboxylase D3M96_03715 PF01014 Uricase D3M96_03720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_03720 PF03466 LysR substrate binding domain D3M96_03725 PF00953 Glycosyl transferase family 4 D3M96_03730 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D3M96_03730 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D3M96_03730 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D3M96_03735 PF01370 NAD dependent epimerase/dehydratase family D3M96_03745 PF13439 Glycosyltransferase Family 4 D3M96_03745 PF00534 Glycosyl transferases group 1 D3M96_03750 PF00534 Glycosyl transferases group 1 D3M96_03750 PF13439 Glycosyltransferase Family 4 D3M96_03755 PF00534 Glycosyl transferases group 1 D3M96_03755 PF13477 Glycosyl transferase 4-like D3M96_03760 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D3M96_03760 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D3M96_03760 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D3M96_03760 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D3M96_03765 PF02913 FAD linked oxidases, C-terminal domain D3M96_03765 PF01565 FAD binding domain D3M96_03775 PF01557 Fumarylacetoacetate (FAA) hydrolase family D3M96_03780 PF04209 homogentisate 1,2-dioxygenase D3M96_03790 PF01494 FAD binding domain D3M96_03800 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D3M96_03800 PF06827 Zinc finger found in FPG and IleRS D3M96_03800 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D3M96_03810 PF03550 Outer membrane lipoprotein LolB D3M96_03815 PF08544 GHMP kinases C terminal D3M96_03815 PF00288 GHMP kinases N terminal domain D3M96_03825 PF14572 Phosphoribosyl synthetase-associated domain D3M96_03825 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D3M96_03830 PF14693 Ribosomal protein TL5, C-terminal domain D3M96_03830 PF01386 Ribosomal L25p family D3M96_03835 PF01195 Peptidyl-tRNA hydrolase D3M96_03845 PF01926 50S ribosome-binding GTPase D3M96_03845 PF06071 Protein of unknown function (DUF933) D3M96_03850 PF03783 Curli production assembly/transport component CsgG D3M96_03860 PF05643 Putative bacterial lipoprotein (DUF799) D3M96_03870 PF00892 EamA-like transporter family D3M96_03880 PF00196 Bacterial regulatory proteins, luxR family D3M96_03880 PF00072 Response regulator receiver domain D3M96_03890 PF12848 ABC transporter D3M96_03890 PF00005 ABC transporter D3M96_03890 PF16326 ABC transporter C-terminal domain D3M96_03900 PF03797 Autotransporter beta-domain D3M96_03900 PF00657 GDSL-like Lipase/Acylhydrolase D3M96_03905 PF00484 Carbonic anhydrase D3M96_03910 PF03466 LysR substrate binding domain D3M96_03910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_03920 PF00005 ABC transporter D3M96_03925 PF03379 CcmB protein D3M96_03930 PF01578 Cytochrome C assembly protein D3M96_03940 PF03100 CcmE D3M96_03945 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D3M96_03945 PF01578 Cytochrome C assembly protein D3M96_03950 PF08534 Redoxin D3M96_03955 PF03918 Cytochrome C biogenesis protein D3M96_03965 PF02683 Cytochrome C biogenesis protein transmembrane region D3M96_03975 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D3M96_03975 PF12833 Helix-turn-helix domain D3M96_03975 PF02805 Metal binding domain of Ada D3M96_03975 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D3M96_03995 PF02653 Branched-chain amino acid transport system / permease component D3M96_04000 PF11862 Domain of unknown function (DUF3382) D3M96_04000 PF02653 Branched-chain amino acid transport system / permease component D3M96_04005 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3M96_04005 PF00005 ABC transporter D3M96_04010 PF00005 ABC transporter D3M96_04015 PF03150 Di-haem cytochrome c peroxidase D3M96_04015 PF00034 Cytochrome c D3M96_04020 PF01842 ACT domain D3M96_04020 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3M96_04020 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3M96_04025 PF02082 Transcriptional regulator D3M96_04030 PF01152 Bacterial-like globin D3M96_04035 PF00535 Glycosyl transferase family 2 D3M96_04060 PF00582 Universal stress protein family D3M96_04070 PF02634 FdhD/NarQ family D3M96_04075 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3M96_04075 PF00384 Molybdopterin oxidoreductase D3M96_04075 PF12838 4Fe-4S dicluster domain D3M96_04075 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D3M96_04075 PF01568 Molydopterin dinucleotide binding domain D3M96_04080 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D3M96_04080 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D3M96_04080 PF00037 4Fe-4S binding domain D3M96_04090 PF12727 PBP superfamily domain D3M96_04090 PF12728 Helix-turn-helix domain D3M96_04095 PF04055 Radical SAM superfamily D3M96_04095 PF06463 Molybdenum Cofactor Synthesis C D3M96_04100 PF12804 MobA-like NTP transferase domain D3M96_04105 PF03453 MoeA N-terminal region (domain I and II) D3M96_04105 PF03454 MoeA C-terminal region (domain IV) D3M96_04105 PF00994 Probable molybdopterin binding domain D3M96_04110 PF00994 Probable molybdopterin binding domain D3M96_04115 PF02391 MoaE protein D3M96_04125 PF01967 MoaC family D3M96_04130 PF00072 Response regulator receiver domain D3M96_04130 PF00196 Bacterial regulatory proteins, luxR family D3M96_04135 PF00989 PAS fold D3M96_04135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_04135 PF00512 His Kinase A (phospho-acceptor) domain D3M96_04140 PF03480 Bacterial extracellular solute-binding protein, family 7 D3M96_04145 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component D3M96_04150 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_04155 PF08534 Redoxin D3M96_04170 PF06968 Biotin and Thiamin Synthesis associated domain D3M96_04170 PF04055 Radical SAM superfamily D3M96_04185 PF00873 AcrB/AcrD/AcrF family D3M96_04190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3M96_04230 PF03707 Bacterial signalling protein N terminal repeat D3M96_04230 PF00563 EAL domain D3M96_04230 PF00990 Diguanylate cyclase, GGDEF domain D3M96_04235 PF00795 Carbon-nitrogen hydrolase D3M96_04240 PF03471 Transporter associated domain D3M96_04240 PF00571 CBS domain D3M96_04245 PF02130 Uncharacterized protein family UPF0054 D3M96_04250 PF02562 PhoH-like protein D3M96_04255 PF00919 Uncharacterized protein family UPF0004 D3M96_04255 PF01938 TRAM domain D3M96_04255 PF04055 Radical SAM superfamily D3M96_04265 PF00557 Metallopeptidase family M24 D3M96_04270 PF02355 Protein export membrane protein D3M96_04270 PF07549 SecD/SecF GG Motif D3M96_04275 PF02355 Protein export membrane protein D3M96_04275 PF13721 SecD export protein N-terminal TM region D3M96_04275 PF07549 SecD/SecF GG Motif D3M96_04280 PF02699 Preprotein translocase subunit D3M96_04285 PF01702 Queuine tRNA-ribosyltransferase D3M96_04290 PF02547 Queuosine biosynthesis protein D3M96_04295 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D3M96_04310 PF05957 Bacterial protein of unknown function (DUF883) D3M96_04325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_04325 PF03466 LysR substrate binding domain D3M96_04340 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family D3M96_04355 PF01425 Amidase D3M96_04365 PF00083 Sugar (and other) transporter D3M96_04365 PF08946 Osmosensory transporter coiled coil D3M96_04370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_04370 PF03466 LysR substrate binding domain D3M96_04390 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase D3M96_04395 PF01464 Transglycosylase SLT domain D3M96_04400 PF00155 Aminotransferase class I and II D3M96_04410 PF03949 Malic enzyme, NAD binding domain D3M96_04410 PF01515 Phosphate acetyl/butaryl transferase D3M96_04410 PF00390 Malic enzyme, N-terminal domain D3M96_04420 PF01337 Barstar (barnase inhibitor) D3M96_04425 PF04452 RNA methyltransferase D3M96_04430 PF02779 Transketolase, pyrimidine binding domain D3M96_04430 PF00456 Transketolase, thiamine diphosphate binding domain D3M96_04430 PF02780 Transketolase, C-terminal domain D3M96_04435 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D3M96_04435 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D3M96_04440 PF00162 Phosphoglycerate kinase D3M96_04455 PF00171 Aldehyde dehydrogenase family D3M96_04465 PF00994 Probable molybdopterin binding domain D3M96_04470 PF01116 Fructose-bisphosphate aldolase class-II D3M96_04475 PF01259 SAICAR synthetase D3M96_04480 PF00731 AIR carboxylase D3M96_04485 PF02222 ATP-grasp domain D3M96_04485 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain D3M96_04490 PF03481 Putative GTP-binding controlling metal-binding D3M96_04490 PF01300 Telomere recombination D3M96_04500 PF00171 Aldehyde dehydrogenase family D3M96_04500 PF01575 MaoC like domain D3M96_04505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3M96_04505 PF02770 Acyl-CoA dehydrogenase, middle domain D3M96_04505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3M96_04510 PF03466 LysR substrate binding domain D3M96_04510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_04520 PF00551 Formyl transferase D3M96_04525 PF01266 FAD dependent oxidoreductase D3M96_04530 PF01613 Flavin reductase like domain D3M96_04535 PF01243 Pyridoxamine 5'-phosphate oxidase D3M96_04535 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region D3M96_04545 PF00899 ThiF family D3M96_04555 PF00425 chorismate binding enzyme D3M96_04555 PF04715 Anthranilate synthase component I, N terminal region D3M96_04560 PF00005 ABC transporter D3M96_04560 PF17760 UvrA interaction domain D3M96_04560 PF17755 UvrA DNA-binding domain D3M96_04565 PF00535 Glycosyl transferase family 2 D3M96_04575 PF00005 ABC transporter D3M96_04575 PF12848 ABC transporter D3M96_04595 PF03776 Septum formation topological specificity factor MinE D3M96_04600 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D3M96_04605 PF03775 Septum formation inhibitor MinC, C-terminal domain D3M96_04605 PF05209 Septum formation inhibitor MinC, N-terminal domain D3M96_04610 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain D3M96_04610 PF00749 tRNA synthetases class I (E and Q), catalytic domain D3M96_04620 PF02322 Cytochrome bd terminal oxidase subunit II D3M96_04625 PF00654 Voltage gated chloride channel D3M96_04635 PF16124 RecQ zinc-binding D3M96_04635 PF00570 HRDC domain D3M96_04635 PF00271 Helicase conserved C-terminal domain D3M96_04635 PF00270 DEAD/DEAH box helicase D3M96_04635 PF09382 RQC domain D3M96_04640 PF00317 Ribonucleotide reductase, all-alpha domain D3M96_04640 PF02867 Ribonucleotide reductase, barrel domain D3M96_04640 PF03477 ATP cone domain D3M96_04645 PF00268 Ribonucleotide reductase, small chain D3M96_04650 PF00111 2Fe-2S iron-sulfur cluster binding domain D3M96_04665 PF02381 MraZ protein, putative antitoxin-like D3M96_04670 PF01795 MraW methylase family D3M96_04675 PF04999 Cell division protein FtsL D3M96_04680 PF00905 Penicillin binding protein transpeptidase domain D3M96_04680 PF03717 Penicillin-binding Protein dimerisation domain D3M96_04685 PF08245 Mur ligase middle domain D3M96_04685 PF02875 Mur ligase family, glutamate ligase domain D3M96_04685 PF01225 Mur ligase family, catalytic domain D3M96_04690 PF00953 Glycosyl transferase family 4 D3M96_04695 PF02875 Mur ligase family, glutamate ligase domain D3M96_04695 PF08245 Mur ligase middle domain D3M96_04700 PF01098 Cell cycle protein D3M96_04705 PF04101 Glycosyltransferase family 28 C-terminal domain D3M96_04705 PF03033 Glycosyltransferase family 28 N-terminal domain D3M96_04710 PF01225 Mur ligase family, catalytic domain D3M96_04710 PF02875 Mur ligase family, glutamate ligase domain D3M96_04710 PF08245 Mur ligase middle domain D3M96_04715 PF01820 D-ala D-ala ligase N-terminus D3M96_04715 PF07478 D-ala D-ala ligase C-terminus D3M96_04720 PF03799 Cell division protein FtsQ D3M96_04720 PF08478 POTRA domain, FtsQ-type D3M96_04725 PF02491 SHS2 domain inserted in FTSA D3M96_04730 PF12327 FtsZ family, C-terminal domain D3M96_04730 PF00091 Tubulin/FtsZ family, GTPase domain D3M96_04735 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D3M96_04745 PF10145 Phage-related minor tail protein D3M96_04745 PF01464 Transglycosylase SLT domain D3M96_04745 PF01551 Peptidase family M23 D3M96_04750 PF07516 SecA Wing and Scaffold domain D3M96_04750 PF01043 SecA preprotein cross-linking domain D3M96_04750 PF07517 SecA DEAD-like domain D3M96_04750 PF02810 SEC-C motif D3M96_04760 PF03448 MgtE intracellular N domain D3M96_04760 PF01769 Divalent cation transporter D3M96_04760 PF00571 CBS domain D3M96_04765 PF03061 Thioesterase superfamily D3M96_04770 PF01546 Peptidase family M20/M25/M40 D3M96_04770 PF07687 Peptidase dimerisation domain D3M96_04775 PF13193 AMP-binding enzyme C-terminal domain D3M96_04775 PF00501 AMP-binding enzyme D3M96_04780 PF00459 Inositol monophosphatase family D3M96_04785 PF01266 FAD dependent oxidoreductase D3M96_04785 PF05430 S-adenosyl-L-methionine-dependent methyltransferase D3M96_04800 PF00005 ABC transporter D3M96_04800 PF09383 NIL domain D3M96_04805 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_04810 PF03180 NLPA lipoprotein D3M96_04815 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3M96_04820 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_04825 PF00005 ABC transporter D3M96_04835 PF00483 Nucleotidyl transferase D3M96_04840 PF01636 Phosphotransferase enzyme family D3M96_04845 PF04453 LPS transport system D D3M96_04850 PF00639 PPIC-type PPIASE domain D3M96_04850 PF09312 SurA N-terminal domain D3M96_04855 PF00398 Ribosomal RNA adenine dimethylase D3M96_04860 PF07670 Nucleoside recognition D3M96_04865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3M96_04875 PF01553 Acyltransferase D3M96_04885 PF05746 DALR anticodon binding domain D3M96_04885 PF02092 Glycyl-tRNA synthetase beta subunit D3M96_04890 PF02091 Glycyl-tRNA synthetase alpha subunit D3M96_04900 PF00378 Enoyl-CoA hydratase/isomerase D3M96_04905 PF05683 Fumarase C-terminus D3M96_04905 PF05681 Fumarate hydratase (Fumerase) D3M96_04910 PF00440 Bacterial regulatory proteins, tetR family D3M96_04920 PF07690 Major Facilitator Superfamily D3M96_04930 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D3M96_04935 PF12627 Probable RNA and SrmB- binding site of polymerase A D3M96_04935 PF12626 Polymerase A arginine-rich C-terminus D3M96_04935 PF01743 Poly A polymerase head domain D3M96_04945 PF08299 Bacterial dnaA protein helix-turn-helix D3M96_04945 PF00308 Bacterial dnaA protein D3M96_04950 PF02769 AIR synthase related protein, C-terminal domain D3M96_04950 PF00586 AIR synthase related protein, N-terminal domain D3M96_04955 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin D3M96_04965 PF01119 DNA mismatch repair protein, C-terminal domain D3M96_04965 PF08676 MutL C terminal dimerisation domain D3M96_04970 PF09335 SNARE associated Golgi protein D3M96_04975 PF02424 ApbE family D3M96_04980 PF00175 Oxidoreductase NAD-binding domain D3M96_04980 PF00258 Flavodoxin D3M96_04980 PF00667 FAD binding domain D3M96_04995 PF01520 N-acetylmuramoyl-L-alanine amidase D3M96_04995 PF11741 AMIN domain D3M96_05000 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE D3M96_05010 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_05015 PF01515 Phosphate acetyl/butaryl transferase D3M96_05015 PF00390 Malic enzyme, N-terminal domain D3M96_05015 PF03949 Malic enzyme, NAD binding domain D3M96_05020 PF03466 LysR substrate binding domain D3M96_05020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_05025 PF00171 Aldehyde dehydrogenase family D3M96_05030 PF00701 Dihydrodipicolinate synthetase family D3M96_05040 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_05070 PF01638 HxlR-like helix-turn-helix D3M96_05075 PF13460 NAD(P)H-binding D3M96_05085 PF07690 Major Facilitator Superfamily D3M96_05095 PF04073 Aminoacyl-tRNA editing domain D3M96_05100 PF00589 Phage integrase family D3M96_05100 PF02899 Phage integrase, N-terminal SAM-like domain D3M96_05110 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_05115 PF03459 TOBE domain D3M96_05115 PF00005 ABC transporter D3M96_05120 PF03459 TOBE domain D3M96_05120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_05140 PF12170 DNA polymerase III tau subunit V interacting with alpha D3M96_05140 PF12169 DNA polymerase III subunits gamma and tau domain III D3M96_05140 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding D3M96_05145 PF02575 YbaB/EbfC DNA-binding family D3M96_05150 PF02132 RecR protein D3M96_05150 PF13662 Toprim domain D3M96_05155 PF09084 NMT1/THI5 like D3M96_05160 PF00005 ABC transporter D3M96_05165 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_05180 PF00593 TonB dependent receptor D3M96_05180 PF07715 TonB-dependent Receptor Plug Domain D3M96_05190 PF00923 Transaldolase/Fructose-6-phosphate aldolase D3M96_05195 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D3M96_05195 PF00117 Glutamine amidotransferase class-I D3M96_05200 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3M96_05200 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D3M96_05200 PF02142 MGS-like domain D3M96_05215 PF00300 Histidine phosphatase superfamily (branch 1) D3M96_05220 PF00860 Permease family D3M96_05225 PF03449 Transcription elongation factor, N-terminal D3M96_05225 PF01272 Transcription elongation factor, GreA/GreB, C-term D3M96_05230 PF01985 CRS1 / YhbY (CRM) domain D3M96_05235 PF01728 FtsJ-like methyltransferase D3M96_05240 PF00004 ATPase family associated with various cellular activities (AAA) D3M96_05240 PF17862 AAA+ lid domain D3M96_05240 PF01434 Peptidase family M41 D3M96_05240 PF06480 FtsH Extracellular D3M96_05245 PF00809 Pterin binding enzyme D3M96_05250 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D3M96_05250 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D3M96_05250 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D3M96_05250 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D3M96_05265 PF02541 Ppx/GppA phosphatase family D3M96_05270 PF13089 Polyphosphate kinase N-terminal domain D3M96_05270 PF17941 Polyphosphate kinase C-terminal domain 1 D3M96_05270 PF13090 Polyphosphate kinase C-terminal domain 2 D3M96_05270 PF02503 Polyphosphate kinase middle domain D3M96_05275 PF12849 PBP superfamily domain D3M96_05280 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_05285 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_05290 PF00005 ABC transporter D3M96_05300 PF00501 AMP-binding enzyme D3M96_05300 PF13193 AMP-binding enzyme C-terminal domain D3M96_05315 PF00486 Transcriptional regulatory protein, C terminal D3M96_05315 PF00072 Response regulator receiver domain D3M96_05320 PF07689 KaiB domain D3M96_05320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_05320 PF00512 His Kinase A (phospho-acceptor) domain D3M96_05330 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3M96_05335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_05335 PF03466 LysR substrate binding domain D3M96_05355 PF00884 Sulfatase D3M96_05365 PF03466 LysR substrate binding domain D3M96_05365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_05385 PF00474 Sodium:solute symporter family D3M96_05405 PF00872 Transposase, Mutator family D3M96_05415 PF00145 C-5 cytosine-specific DNA methylase D3M96_05425 PF08223 PaaX-like protein C-terminal domain D3M96_05425 PF07848 PaaX-like protein D3M96_05445 PF01300 Telomere recombination D3M96_05450 PF02163 Peptidase family M50 D3M96_05455 PF00701 Dihydrodipicolinate synthetase family D3M96_05460 PF06804 NlpB/DapX lipoprotein D3M96_05480 PF00202 Aminotransferase class-III D3M96_05485 PF00155 Aminotransferase class I and II D3M96_05490 PF00067 Cytochrome P450 D3M96_05495 PF03594 Benzoate membrane transport protein D3M96_05500 PF08007 Cupin superfamily protein D3M96_05505 PF05188 MutS domain II D3M96_05505 PF05192 MutS domain III D3M96_05505 PF05190 MutS family domain IV D3M96_05505 PF00488 MutS domain V D3M96_05505 PF01624 MutS domain I D3M96_05510 PF12167 Arm DNA-binding domain D3M96_05510 PF00589 Phage integrase family D3M96_05545 PF07690 Major Facilitator Superfamily D3M96_05550 PF04002 RadC-like JAB domain D3M96_05565 PF01965 DJ-1/PfpI family D3M96_05570 PF01965 DJ-1/PfpI family D3M96_05600 PF01618 MotA/TolQ/ExbB proton channel family D3M96_05605 PF02472 Biopolymer transport protein ExbD/TolR D3M96_05630 PF00639 PPIC-type PPIASE domain D3M96_05630 PF09312 SurA N-terminal domain D3M96_05650 PF03358 NADPH-dependent FMN reductase D3M96_05655 PF01758 Sodium Bile acid symporter family D3M96_05660 PF01451 Low molecular weight phosphotyrosine protein phosphatase D3M96_05665 PF01022 Bacterial regulatory protein, arsR family D3M96_05670 PF04002 RadC-like JAB domain D3M96_05675 PF07517 SecA DEAD-like domain D3M96_05675 PF01043 SecA preprotein cross-linking domain D3M96_05675 PF02810 SEC-C motif D3M96_05675 PF07516 SecA Wing and Scaffold domain D3M96_05695 PF01699 Sodium/calcium exchanger protein D3M96_05705 PF06067 Domain of unknown function (DUF932) D3M96_05710 PF02195 ParB-like nuclease domain D3M96_05715 PF03230 Antirestriction protein D3M96_05720 PF05016 ParE toxin of type II toxin-antitoxin system, parDE D3M96_05725 PF09386 Antitoxin ParD D3M96_05780 PF01381 Helix-turn-helix D3M96_05800 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH D3M96_05825 PF03466 LysR substrate binding domain D3M96_05825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_05830 PF02534 Type IV secretory system Conjugative DNA transfer D3M96_05840 PF00437 Type II/IV secretion system protein D3M96_05855 PF03135 CagE, TrbE, VirB family, component of type IV transporter system D3M96_05885 PF03743 Bacterial conjugation TrbI-like protein D3M96_05970 PF00593 TonB dependent receptor D3M96_05970 PF07715 TonB-dependent Receptor Plug Domain D3M96_05980 PF01867 CRISPR associated protein Cas1 D3M96_05985 PF18019 HD domain D3M96_05990 PF09611 CRISPR-associated protein (Cas_Csy1) D3M96_05995 PF09614 CRISPR-associated protein (Cas_Csy2) D3M96_06000 PF09615 CRISPR-associated protein (Cas_Csy3) D3M96_06005 PF09618 CRISPR-associated protein (Cas_Csy4) D3M96_06020 PF02321 Outer membrane efflux protein D3M96_06025 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D3M96_06030 PF00664 ABC transporter transmembrane region D3M96_06030 PF00005 ABC transporter D3M96_06040 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_06045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_06045 PF03466 LysR substrate binding domain D3M96_06050 PF00296 Luciferase-like monooxygenase D3M96_06060 PF05552 Conserved TM helix D3M96_06060 PF00924 Mechanosensitive ion channel D3M96_06065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_06065 PF03466 LysR substrate binding domain D3M96_06070 PF00109 Beta-ketoacyl synthase, N-terminal domain D3M96_06070 PF14765 Polyketide synthase dehydratase D3M96_06070 PF00550 Phosphopantetheine attachment site D3M96_06070 PF02801 Beta-ketoacyl synthase, C-terminal domain D3M96_06070 PF16197 Ketoacyl-synthetase C-terminal extension D3M96_06070 PF08659 KR domain D3M96_06070 PF00698 Acyl transferase domain D3M96_06075 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase D3M96_06090 PF01039 Carboxyl transferase domain D3M96_06095 PF06857 Malonate decarboxylase delta subunit (MdcD) D3M96_06100 PF16957 Malonate decarboxylase, alpha subunit, transporter D3M96_06105 PF01425 Amidase D3M96_06110 PF02667 Short chain fatty acid transporter D3M96_06120 PF00588 SpoU rRNA Methylase family D3M96_06125 PF00459 Inositol monophosphatase family D3M96_06130 PF03741 Integral membrane protein TerC family D3M96_06130 PF03471 Transporter associated domain D3M96_06135 PF02673 Bacitracin resistance protein BacA D3M96_06150 PF00149 Calcineurin-like phosphoesterase D3M96_06155 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D3M96_06165 PF01406 tRNA synthetases class I (C) catalytic domain D3M96_06165 PF09190 DALR domain D3M96_06175 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D3M96_06180 PF01171 PP-loop family D3M96_06180 PF09179 TilS substrate binding domain D3M96_06185 PF00696 Amino acid kinase family D3M96_06185 PF13840 ACT domain D3M96_06185 PF01842 ACT domain D3M96_06200 PF01145 SPFH domain / Band 7 family D3M96_06210 PF02311 AraC-like ligand binding domain D3M96_06210 PF12833 Helix-turn-helix domain D3M96_06215 PF00795 Carbon-nitrogen hydrolase D3M96_06225 PF00132 Bacterial transferase hexapeptide (six repeats) D3M96_06240 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_06245 PF08402 TOBE domain D3M96_06245 PF00005 ABC transporter D3M96_06250 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D3M96_06250 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D3M96_06255 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch D3M96_06260 PF02233 NAD(P) transhydrogenase beta subunit D3M96_06280 PF01070 FMN-dependent dehydrogenase D3M96_06285 PF13409 Glutathione S-transferase, N-terminal domain D3M96_06290 PF03358 NADPH-dependent FMN reductase D3M96_06305 PF02245 Methylpurine-DNA glycosylase (MPG) D3M96_06315 PF04241 Protein of unknown function (DUF423) D3M96_06320 PF01544 CorA-like Mg2+ transporter protein D3M96_06325 PF02770 Acyl-CoA dehydrogenase, middle domain D3M96_06325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3M96_06325 PF18158 Adaptive response protein AidB N-terminal domain D3M96_06335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3M96_06340 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_06345 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_06345 PF12911 N-terminal TM domain of oligopeptide transport permease C D3M96_06350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3M96_06350 PF00005 ABC transporter D3M96_06360 PF00158 Sigma-54 interaction domain D3M96_06360 PF02954 Bacterial regulatory protein, Fis family D3M96_06360 PF01590 GAF domain D3M96_06365 PF00171 Aldehyde dehydrogenase family D3M96_06370 PF00465 Iron-containing alcohol dehydrogenase D3M96_06375 PF01132 Elongation factor P (EF-P) OB domain D3M96_06375 PF09285 Elongation factor P, C-terminal D3M96_06375 PF08207 Elongation factor P (EF-P) KOW-like domain D3M96_06390 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_06390 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_06400 PF03480 Bacterial extracellular solute-binding protein, family 7 D3M96_06405 PF06434 Aconitate hydratase 2 N-terminus D3M96_06405 PF00330 Aconitase family (aconitate hydratase) D3M96_06405 PF11791 Aconitate B N-terminal domain D3M96_06420 PF00285 Citrate synthase, C-terminal domain D3M96_06430 PF00158 Sigma-54 interaction domain D3M96_06430 PF02954 Bacterial regulatory protein, Fis family D3M96_06430 PF06506 Propionate catabolism activator D3M96_06435 PF07690 Major Facilitator Superfamily D3M96_06445 PF00056 lactate/malate dehydrogenase, NAD binding domain D3M96_06445 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D3M96_06450 PF07702 UTRA domain D3M96_06450 PF00392 Bacterial regulatory proteins, gntR family D3M96_06455 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit D3M96_06465 PF02910 Fumarate reductase flavoprotein C-term D3M96_06465 PF00890 FAD binding domain D3M96_06470 PF13085 2Fe-2S iron-sulfur cluster binding domain D3M96_06475 PF03937 Flavinator of succinate dehydrogenase D3M96_06480 PF00285 Citrate synthase, C-terminal domain D3M96_06485 PF07729 FCD domain D3M96_06485 PF00392 Bacterial regulatory proteins, gntR family D3M96_06490 PF02652 L-lactate permease D3M96_06495 PF01515 Phosphate acetyl/butaryl transferase D3M96_06495 PF00390 Malic enzyme, N-terminal domain D3M96_06495 PF03949 Malic enzyme, NAD binding domain D3M96_06500 PF16078 2-oxoglutarate dehydrogenase N-terminus D3M96_06500 PF16870 2-oxoglutarate dehydrogenase C-terminal D3M96_06500 PF02779 Transketolase, pyrimidine binding domain D3M96_06500 PF00676 Dehydrogenase E1 component D3M96_06505 PF02817 e3 binding domain D3M96_06505 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D3M96_06505 PF00364 Biotin-requiring enzyme D3M96_06510 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3M96_06510 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3M96_06515 PF03969 AFG1-like ATPase D3M96_06520 PF00579 tRNA synthetases class I (W and Y) D3M96_06525 PF00132 Bacterial transferase hexapeptide (six repeats) D3M96_06535 PF17674 HHH domain D3M96_06535 PF09371 Tex-like protein N-terminal domain D3M96_06535 PF00575 S1 RNA binding domain D3M96_06535 PF16921 Tex protein YqgF-like domain D3M96_06540 PF04851 Type III restriction enzyme, res subunit D3M96_06540 PF13307 Helicase C-terminal domain D3M96_06545 PF01740 STAS domain D3M96_06545 PF00916 Sulfate permease family D3M96_06550 PF06249 Ethanolamine utilisation protein EutQ D3M96_06570 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_06575 PF00440 Bacterial regulatory proteins, tetR family D3M96_06575 PF08361 MAATS-type transcriptional repressor, C-terminal region D3M96_06580 PF13525 Outer membrane lipoprotein D3M96_06585 PF00849 RNA pseudouridylate synthase D3M96_06585 PF01479 S4 domain D3M96_06595 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus D3M96_06600 PF00106 short chain dehydrogenase D3M96_06605 PF05233 PHB accumulation regulatory domain D3M96_06605 PF07879 PHB/PHA accumulation regulator DNA-binding domain D3M96_06630 PF04079 Segregation and condensation complex subunit ScpB D3M96_06635 PF01479 S4 domain D3M96_06635 PF00849 RNA pseudouridylate synthase D3M96_06640 PF02576 RimP N-terminal domain D3M96_06640 PF17384 RimP C-terminal SH3 domain D3M96_06645 PF08529 NusA N-terminal domain D3M96_06645 PF13184 NusA-like KH domain D3M96_06650 PF11987 Translation-initiation factor 2 D3M96_06650 PF04760 Translation initiation factor IF-2, N-terminal region D3M96_06650 PF00009 Elongation factor Tu GTP binding domain D3M96_06650 PF08364 Bacterial translation initiation factor IF-2 associated region D3M96_06655 PF02033 Ribosome-binding factor A D3M96_06660 PF16198 tRNA pseudouridylate synthase B C-terminal domain D3M96_06660 PF01509 TruB family pseudouridylate synthase (N terminal domain) D3M96_06670 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3M96_06680 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_06685 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_06690 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3M96_06695 PF03641 Possible lysine decarboxylase D3M96_06700 PF01367 5'-3' exonuclease, C-terminal SAM fold D3M96_06700 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D3M96_06700 PF01612 3'-5' exonuclease D3M96_06700 PF00476 DNA polymerase family A D3M96_06705 PF02690 Na+/Pi-cotransporter D3M96_06710 PF01435 Peptidase family M48 D3M96_06720 PF00581 Rhodanese-like domain D3M96_06725 PF02609 Exonuclease VII small subunit D3M96_06730 PF00348 Polyprenyl synthetase D3M96_06735 PF02780 Transketolase, C-terminal domain D3M96_06735 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D3M96_06735 PF02779 Transketolase, pyrimidine binding domain D3M96_06740 PF02649 Type I GTP cyclohydrolase folE2 D3M96_06745 PF01250 Ribosomal protein S6 D3M96_06755 PF01084 Ribosomal protein S18 D3M96_06760 PF01281 Ribosomal protein L9, N-terminal domain D3M96_06760 PF03948 Ribosomal protein L9, C-terminal domain D3M96_06765 PF00772 DnaB-like helicase N terminal domain D3M96_06765 PF03796 DnaB-like helicase C terminal domain D3M96_06770 PF13593 SBF-like CPA transporter family (DUF4137) D3M96_06775 PF04166 Pyridoxal phosphate biosynthetic protein PdxA D3M96_06780 PF13638 PIN domain D3M96_06780 PF02562 PhoH-like protein D3M96_06785 PF00578 AhpC/TSA family D3M96_06790 PF04430 Protein of unknown function (DUF498/DUF598) D3M96_06795 PF00155 Aminotransferase class I and II D3M96_06800 PF03447 Homoserine dehydrogenase, NAD binding domain D3M96_06800 PF00742 Homoserine dehydrogenase D3M96_06800 PF01842 ACT domain D3M96_06805 PF00291 Pyridoxal-phosphate dependent enzyme D3M96_06805 PF14821 Threonine synthase N terminus D3M96_06815 PF13302 Acetyltransferase (GNAT) domain D3M96_06820 PF01593 Flavin containing amine oxidoreductase D3M96_06835 PF00842 Alanine racemase, C-terminal domain D3M96_06835 PF01168 Alanine racemase, N-terminal domain D3M96_06845 PF18073 Rubredoxin metal binding domain D3M96_06860 PF13416 Bacterial extracellular solute-binding protein D3M96_06865 PF08402 TOBE domain D3M96_06865 PF00005 ABC transporter D3M96_06870 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_06875 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_06880 PF03960 ArsC family D3M96_06885 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) D3M96_06890 PF01895 PhoU domain D3M96_06895 PF01590 GAF domain D3M96_06895 PF00563 EAL domain D3M96_06895 PF00990 Diguanylate cyclase, GGDEF domain D3M96_06895 PF00360 Phytochrome region D3M96_06900 PF04362 Bacterial Fe(2+) trafficking D3M96_06905 PF00583 Acetyltransferase (GNAT) family D3M96_06905 PF00696 Amino acid kinase family D3M96_06910 PF00270 DEAD/DEAH box helicase D3M96_06910 PF00271 Helicase conserved C-terminal domain D3M96_06910 PF04408 Helicase associated domain (HA2) D3M96_06910 PF11898 Domain of unknown function (DUF3418) D3M96_06910 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold D3M96_06915 PF14579 Helix-hairpin-helix motif D3M96_06915 PF02811 PHP domain D3M96_06915 PF07733 Bacterial DNA polymerase III alpha NTPase domain D3M96_06915 PF01336 OB-fold nucleic acid binding domain D3M96_06915 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D3M96_06920 PF00534 Glycosyl transferases group 1 D3M96_06920 PF13439 Glycosyltransferase Family 4 D3M96_06925 PF01522 Polysaccharide deacetylase D3M96_06930 PF00535 Glycosyl transferase family 2 D3M96_06940 PF00534 Glycosyl transferases group 1 D3M96_06940 PF13439 Glycosyltransferase Family 4 D3M96_06950 PF03692 Putative zinc- or iron-chelating domain D3M96_06965 PF00005 ABC transporter D3M96_06965 PF00664 ABC transporter transmembrane region D3M96_06980 PF00575 S1 RNA binding domain D3M96_06980 PF10150 Ribonuclease E/G family D3M96_06985 PF00872 Transposase, Mutator family D3M96_07030 PF07729 FCD domain D3M96_07030 PF00392 Bacterial regulatory proteins, gntR family D3M96_07035 PF02913 FAD linked oxidases, C-terminal domain D3M96_07035 PF01565 FAD binding domain D3M96_07040 PF01565 FAD binding domain D3M96_07045 PF13183 4Fe-4S dicluster domain D3M96_07045 PF02754 Cysteine-rich domain D3M96_07050 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D3M96_07055 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase D3M96_07060 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit D3M96_07065 PF04909 Amidohydrolase D3M96_07070 PF03737 Aldolase/RraA D3M96_07075 PF04909 Amidohydrolase D3M96_07080 PF07690 Major Facilitator Superfamily D3M96_07085 PF04303 PrpF protein D3M96_07090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_07090 PF03466 LysR substrate binding domain D3M96_07095 PF07690 Major Facilitator Superfamily D3M96_07100 PF00171 Aldehyde dehydrogenase family D3M96_07105 PF01565 FAD binding domain D3M96_07105 PF02913 FAD linked oxidases, C-terminal domain D3M96_07120 PF01494 FAD binding domain D3M96_07150 PF02690 Na+/Pi-cotransporter D3M96_07165 PF13609 Gram-negative porin D3M96_07175 PF00892 EamA-like transporter family D3M96_07185 PF03466 LysR substrate binding domain D3M96_07185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_07190 PF03601 Conserved hypothetical protein 698 D3M96_07195 PF04247 Invasion gene expression up-regulator, SirB D3M96_07200 PF00753 Metallo-beta-lactamase superfamily D3M96_07210 PF04143 Sulphur transport D3M96_07220 PF13411 MerR HTH family regulatory protein D3M96_07225 PF00403 Heavy-metal-associated domain D3M96_07230 PF00916 Sulfate permease family D3M96_07230 PF01740 STAS domain D3M96_07240 PF05154 TM2 domain D3M96_07245 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D3M96_07245 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D3M96_07250 PF16901 C-terminal domain of alpha-glycerophosphate oxidase D3M96_07250 PF01266 FAD dependent oxidoreductase D3M96_07255 PF01476 LysM domain D3M96_07255 PF00877 NlpC/P60 family D3M96_07260 PF05247 Flagellar transcriptional activator (FlhD) D3M96_07265 PF05280 Flagellar transcriptional activator (FlhC) D3M96_07270 PF01618 MotA/TolQ/ExbB proton channel family D3M96_07275 PF13677 Membrane MotB of proton-channel complex MotA/MotB D3M96_07275 PF00691 OmpA family D3M96_07280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_07280 PF01627 Hpt domain D3M96_07280 PF01584 CheW-like domain D3M96_07280 PF02895 Signal transducing histidine kinase, homodimeric domain D3M96_07280 PF09078 CheY binding D3M96_07285 PF01584 CheW-like domain D3M96_07290 PF00672 HAMP domain D3M96_07290 PF02203 Tar ligand binding domain homologue D3M96_07290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3M96_07295 PF03705 CheR methyltransferase, all-alpha domain D3M96_07295 PF01739 CheR methyltransferase, SAM binding domain D3M96_07300 PF01339 CheB methylesterase D3M96_07300 PF00072 Response regulator receiver domain D3M96_07305 PF00072 Response regulator receiver domain D3M96_07310 PF04344 Chemotaxis phosphatase, CheZ D3M96_07315 PF01312 FlhB HrpN YscU SpaS Family D3M96_07320 PF00771 FHIPEP family D3M96_07325 PF00448 SRP54-type protein, GTPase domain D3M96_07330 PF07804 HipA-like C-terminal domain D3M96_07330 PF13657 HipA N-terminal domain D3M96_07345 PF04316 Anti-sigma-28 factor, FlgM D3M96_07355 PF00460 Flagella basal body rod protein D3M96_07360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3M96_07360 PF00460 Flagella basal body rod protein D3M96_07365 PF03963 Flagellar hook capping protein - N-terminal region D3M96_07365 PF13860 FlgD Ig-like domain D3M96_07365 PF13861 FlgD Tudor-like domain D3M96_07370 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3M96_07370 PF00460 Flagella basal body rod protein D3M96_07370 PF07559 Flagellar basal body protein FlaE D3M96_07375 PF00460 Flagella basal body rod protein D3M96_07375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3M96_07380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3M96_07380 PF00460 Flagella basal body rod protein D3M96_07385 PF02107 Flagellar L-ring protein D3M96_07390 PF02119 Flagellar P-ring protein D3M96_07395 PF10135 Rod binding protein D3M96_07395 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase D3M96_07400 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3M96_07400 PF00460 Flagella basal body rod protein D3M96_07405 PF00669 Bacterial flagellin N-terminal helical region D3M96_07410 PF00672 HAMP domain D3M96_07410 PF02203 Tar ligand binding domain homologue D3M96_07410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3M96_07420 PF00672 HAMP domain D3M96_07420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3M96_07420 PF02203 Tar ligand binding domain homologue D3M96_07435 PF01311 Bacterial export proteins, family 1 D3M96_07440 PF01313 Bacterial export proteins, family 3 D3M96_07445 PF00813 FliP family D3M96_07450 PF04347 Flagellar biosynthesis protein, FliO D3M96_07455 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D3M96_07455 PF16973 Flagellar motor switch protein FliN N-terminal D3M96_07460 PF02154 Flagellar motor switch protein FliM D3M96_07460 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D3M96_07465 PF03748 Flagellar basal body-associated protein FliL D3M96_07475 PF02050 Flagellar FliJ protein D3M96_07480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3M96_07480 PF18269 T3SS EscN ATPase C-terminal domain D3M96_07490 PF14842 FliG N-terminal domain D3M96_07490 PF01706 FliG C-terminal domain D3M96_07490 PF14841 FliG middle domain D3M96_07495 PF01514 Secretory protein of YscJ/FliF family D3M96_07495 PF08345 Flagellar M-ring protein C-terminal D3M96_07500 PF02049 Flagellar hook-basal body complex protein FliE D3M96_07505 PF01312 FlhB HrpN YscU SpaS Family D3M96_07520 PF02561 Flagellar protein FliS D3M96_07525 PF07196 Flagellin hook IN motif D3M96_07525 PF07195 Flagellar hook-associated protein 2 C-terminus D3M96_07525 PF02465 Flagellar hook-associated protein 2 N-terminus D3M96_07530 PF03646 FlaG protein D3M96_07535 PF04542 Sigma-70 region 2 D3M96_07535 PF04539 Sigma-70 region 3 D3M96_07535 PF04545 Sigma-70, region 4 D3M96_07545 PF08884 Flagellin D3 domain D3M96_07545 PF00669 Bacterial flagellin N-terminal helical region D3M96_07545 PF00700 Bacterial flagellin C-terminal helical region D3M96_07580 PF00005 ABC transporter D3M96_07590 PF03781 Sulfatase-modifying factor enzyme 1 D3M96_07610 PF04286 Protein of unknown function (DUF445) D3M96_07615 PF08447 PAS fold D3M96_07615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3M96_07620 PF08447 PAS fold D3M96_07620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3M96_07630 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D3M96_07630 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain D3M96_07635 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_07655 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) D3M96_07665 PF00589 Phage integrase family D3M96_07665 PF02899 Phage integrase, N-terminal SAM-like domain D3M96_07700 PF03466 LysR substrate binding domain D3M96_07700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_07710 PF01425 Amidase D3M96_07725 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_07730 PF08274 PhnA Zinc-Ribbon D3M96_07730 PF03831 PhnA domain D3M96_07745 PF07715 TonB-dependent Receptor Plug Domain D3M96_07750 PF03150 Di-haem cytochrome c peroxidase D3M96_07755 PF00465 Iron-containing alcohol dehydrogenase D3M96_07765 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_07775 PF00924 Mechanosensitive ion channel D3M96_07780 PF00324 Amino acid permease D3M96_07785 PF00230 Major intrinsic protein D3M96_07820 PF03743 Bacterial conjugation TrbI-like protein D3M96_07835 PF04610 TrbL/VirB6 plasmid conjugal transfer protein D3M96_07850 PF03135 CagE, TrbE, VirB family, component of type IV transporter system D3M96_07860 PF04956 TrbC/VIRB2 family D3M96_07865 PF00437 Type II/IV secretion system protein D3M96_07875 PF02534 Type IV secretory system Conjugative DNA transfer D3M96_07885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_07885 PF03466 LysR substrate binding domain D3M96_07890 PF07690 Major Facilitator Superfamily D3M96_07895 PF02627 Carboxymuconolactone decarboxylase family D3M96_07900 PF00248 Aldo/keto reductase family D3M96_07920 PF10502 Signal peptidase, peptidase S26 D3M96_07935 PF13614 AAA domain D3M96_07965 PF01381 Helix-turn-helix D3M96_07990 PF02195 ParB-like nuclease domain D3M96_07995 PF06067 Domain of unknown function (DUF932) D3M96_08005 PF00069 Protein kinase domain D3M96_08010 PF00069 Protein kinase domain D3M96_08010 PF03793 PASTA domain D3M96_08015 PF04002 RadC-like JAB domain D3M96_08030 PF17761 DUF1016 N-terminal domain D3M96_08030 PF06250 YhcG PDDEXK nuclease domain D3M96_08065 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3M96_08065 PF10518 TAT (twin-arginine translocation) pathway signal sequence D3M96_08065 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding D3M96_08090 PF00313 'Cold-shock' DNA-binding domain D3M96_08095 PF00512 His Kinase A (phospho-acceptor) domain D3M96_08095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_08095 PF08521 Two-component sensor kinase N-terminal D3M96_08100 PF00072 Response regulator receiver domain D3M96_08100 PF00486 Transcriptional regulatory protein, C terminal D3M96_08105 PF00115 Cytochrome C and Quinol oxidase polypeptide I D3M96_08115 PF00034 Cytochrome c D3M96_08120 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3M96_08125 PF00872 Transposase, Mutator family D3M96_08130 PF00149 Calcineurin-like phosphoesterase D3M96_08135 PF07715 TonB-dependent Receptor Plug Domain D3M96_08135 PF00593 TonB dependent receptor D3M96_08160 PF01914 MarC family integral membrane protein D3M96_08170 PF00999 Sodium/hydrogen exchanger family D3M96_08180 PF00529 HlyD membrane-fusion protein of T1SS D3M96_08180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3M96_08185 PF12805 FUSC-like inner membrane protein yccS D3M96_08190 PF00860 Permease family D3M96_08210 PF02630 SCO1/SenC D3M96_08220 PF01645 Conserved region in glutamate synthase D3M96_08230 PF12802 MarR family D3M96_08235 PF18146 Damage-inducible protein CinA KH domain D3M96_08235 PF02464 Competence-damaged protein D3M96_08235 PF00994 Probable molybdopterin binding domain D3M96_08240 PF00330 Aconitase family (aconitate hydratase) D3M96_08240 PF00694 Aconitase C-terminal domain D3M96_08250 PF04303 PrpF protein D3M96_08265 PF00355 Rieske [2Fe-2S] domain D3M96_08265 PF00848 Ring hydroxylating alpha subunit (catalytic domain) D3M96_08270 PF00866 Ring hydroxylating beta subunit D3M96_08290 PF00171 Aldehyde dehydrogenase family D3M96_08300 PF13193 AMP-binding enzyme C-terminal domain D3M96_08300 PF00501 AMP-binding enzyme D3M96_08305 PF02627 Carboxymuconolactone decarboxylase family D3M96_08315 PF12794 Mechanosensitive ion channel inner membrane domain 1 D3M96_08315 PF00924 Mechanosensitive ion channel D3M96_08315 PF12795 Mechanosensitive ion channel porin domain D3M96_08320 PF12794 Mechanosensitive ion channel inner membrane domain 1 D3M96_08320 PF12795 Mechanosensitive ion channel porin domain D3M96_08320 PF00924 Mechanosensitive ion channel D3M96_08325 PF08946 Osmosensory transporter coiled coil D3M96_08325 PF00083 Sugar (and other) transporter D3M96_08340 PF01381 Helix-turn-helix D3M96_08345 PF00072 Response regulator receiver domain D3M96_08350 PF00512 His Kinase A (phospho-acceptor) domain D3M96_08350 PF00072 Response regulator receiver domain D3M96_08350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_08350 PF01627 Hpt domain D3M96_08355 PF03448 MgtE intracellular N domain D3M96_08355 PF01769 Divalent cation transporter D3M96_08355 PF00571 CBS domain D3M96_08365 PF06965 Na+/H+ antiporter 1 D3M96_08370 PF02580 D-Tyr-tRNA(Tyr) deacylase D3M96_08375 PF00893 Small Multidrug Resistance protein D3M96_08385 PF00583 Acetyltransferase (GNAT) family D3M96_08395 PF01435 Peptidase family M48 D3M96_08465 PF00990 Diguanylate cyclase, GGDEF domain D3M96_08465 PF07694 5TMR of 5TMR-LYT D3M96_08480 PF13404 AsnC-type helix-turn-helix domain D3M96_08480 PF01037 Lrp/AsnC ligand binding domain D3M96_08485 PF01053 Cys/Met metabolism PLP-dependent enzyme D3M96_08495 PF00293 NUDIX domain D3M96_08500 PF04304 Protein of unknown function (DUF454) D3M96_08510 PF00764 Arginosuccinate synthase D3M96_08520 PF00149 Calcineurin-like phosphoesterase D3M96_08525 PF12857 TOBE-like domain D3M96_08525 PF00005 ABC transporter D3M96_08530 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_08540 PF01547 Bacterial extracellular solute-binding protein D3M96_08545 PF00356 Bacterial regulatory proteins, lacI family D3M96_08550 PF02540 NAD synthase D3M96_08550 PF00958 GMP synthase C terminal domain D3M96_08550 PF00117 Glutamine amidotransferase class-I D3M96_08560 PF03814 Potassium-transporting ATPase A subunit D3M96_08565 PF02669 K+-transporting ATPase, c chain D3M96_08575 PF00512 His Kinase A (phospho-acceptor) domain D3M96_08575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_08575 PF13492 GAF domain D3M96_08575 PF13493 Domain of unknown function (DUF4118) D3M96_08575 PF02702 Osmosensitive K+ channel His kinase sensor domain D3M96_08580 PF00486 Transcriptional regulatory protein, C terminal D3M96_08580 PF00072 Response regulator receiver domain D3M96_08585 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D3M96_08585 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D3M96_08595 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3M96_08595 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3M96_08600 PF01649 Ribosomal protein S20 D3M96_08605 PF03023 Lipid II flippase MurJ D3M96_08610 PF00106 short chain dehydrogenase D3M96_08615 PF05191 Adenylate kinase, active site lid D3M96_08620 PF02348 Cytidylyltransferase D3M96_08625 PF03966 Trm112p-like protein D3M96_08630 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D3M96_08635 PF02472 Biopolymer transport protein ExbD/TolR D3M96_08640 PF01618 MotA/TolQ/ExbB proton channel family D3M96_08645 PF13742 OB-fold nucleic acid binding domain D3M96_08645 PF02601 Exonuclease VII, large subunit D3M96_08650 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D3M96_08650 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D3M96_08655 PF00210 Ferritin-like domain D3M96_08660 PF02803 Thiolase, C-terminal domain D3M96_08660 PF00108 Thiolase, N-terminal domain D3M96_08670 PF00313 'Cold-shock' DNA-binding domain D3M96_08675 PF02617 ATP-dependent Clp protease adaptor protein ClpS D3M96_08680 PF17871 AAA lid domain D3M96_08680 PF07724 AAA domain (Cdc48 subfamily) D3M96_08680 PF10431 C-terminal, D2-small domain, of ClpB protein D3M96_08680 PF00004 ATPase family associated with various cellular activities (AAA) D3M96_08680 PF02861 Clp amino terminal domain, pathogenicity island component D3M96_08685 PF04403 Paraquat-inducible protein A D3M96_08690 PF02470 MlaD protein D3M96_08700 PF01619 Proline dehydrogenase D3M96_08700 PF00171 Aldehyde dehydrogenase family D3M96_08700 PF18327 Proline utilization A proline dehydrogenase N-terminal domain D3M96_08700 PF14850 DNA-binding domain of Proline dehydrogenase D3M96_08705 PF13458 Periplasmic binding protein D3M96_08710 PF02653 Branched-chain amino acid transport system / permease component D3M96_08715 PF11862 Domain of unknown function (DUF3382) D3M96_08715 PF02653 Branched-chain amino acid transport system / permease component D3M96_08720 PF00005 ABC transporter D3M96_08720 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3M96_08725 PF00005 ABC transporter D3M96_08760 PF05971 RNA methyltransferase D3M96_08765 PF00692 dUTPase D3M96_08770 PF04127 DNA / pantothenate metabolism flavoprotein D3M96_08770 PF02441 Flavoprotein D3M96_08775 PF01252 Signal peptidase (SPase) II D3M96_08780 PF00133 tRNA synthetases class I (I, L, M and V) D3M96_08780 PF08264 Anticodon-binding domain of tRNA D3M96_08780 PF06827 Zinc finger found in FPG and IleRS D3M96_08785 PF06574 FAD synthetase D3M96_08785 PF01687 Riboflavin kinase D3M96_08790 PF00551 Formyl transferase D3M96_08795 PF01029 NusB family D3M96_08795 PF01189 16S rRNA methyltransferase RsmB/F D3M96_08805 PF00580 UvrD/REP helicase N-terminal domain D3M96_08805 PF13361 UvrD-like helicase C-terminal domain D3M96_08830 PF00005 ABC transporter D3M96_08830 PF12848 ABC transporter D3M96_08835 PF05175 Methyltransferase small domain D3M96_08840 PF07687 Peptidase dimerisation domain D3M96_08840 PF01546 Peptidase family M20/M25/M40 D3M96_08845 PF00132 Bacterial transferase hexapeptide (six repeats) D3M96_08845 PF14602 Hexapeptide repeat of succinyl-transferase D3M96_08845 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal D3M96_08855 PF02311 AraC-like ligand binding domain D3M96_08855 PF12833 Helix-turn-helix domain D3M96_08865 PF02080 TrkA-C domain D3M96_08865 PF03600 Citrate transporter D3M96_08910 PF00376 MerR family regulatory protein D3M96_08910 PF09278 MerR, DNA binding D3M96_08915 PF07690 Major Facilitator Superfamily D3M96_08925 PF02515 CoA-transferase family III D3M96_08930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D3M96_08930 PF05697 Bacterial trigger factor protein (TF) D3M96_08930 PF05698 Bacterial trigger factor protein (TF) C-terminus D3M96_08935 PF00574 Clp protease D3M96_08940 PF07724 AAA domain (Cdc48 subfamily) D3M96_08940 PF10431 C-terminal, D2-small domain, of ClpB protein D3M96_08940 PF06689 ClpX C4-type zinc finger D3M96_08945 PF02190 ATP-dependent protease La (LON) substrate-binding domain D3M96_08945 PF05362 Lon protease (S16) C-terminal proteolytic domain D3M96_08945 PF00004 ATPase family associated with various cellular activities (AAA) D3M96_08950 PF00717 Peptidase S24-like D3M96_08950 PF01726 LexA DNA binding domain D3M96_08955 PF13302 Acetyltransferase (GNAT) domain D3M96_08960 PF00155 Aminotransferase class I and II D3M96_08965 PF12344 Ultra-violet resistance protein B D3M96_08965 PF00271 Helicase conserved C-terminal domain D3M96_08965 PF04851 Type III restriction enzyme, res subunit D3M96_08965 PF02151 UvrB/uvrC motif D3M96_08965 PF17757 UvrB interaction domain D3M96_08970 PF01451 Low molecular weight phosphotyrosine protein phosphatase D3M96_08975 PF02082 Transcriptional regulator D3M96_08980 PF00266 Aminotransferase class-V D3M96_08985 PF01592 NifU-like N terminal domain D3M96_08990 PF01521 Iron-sulphur cluster biosynthesis D3M96_08995 PF02142 MGS-like domain D3M96_09000 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_09005 PF01336 OB-fold nucleic acid binding domain D3M96_09005 PF00152 tRNA synthetases class II (D, K and N) D3M96_09010 PF00106 short chain dehydrogenase D3M96_09020 PF02203 Tar ligand binding domain homologue D3M96_09020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3M96_09020 PF00672 HAMP domain D3M96_09025 PF01176 Translation initiation factor 1A / IF-1 D3M96_09030 PF00892 EamA-like transporter family D3M96_09035 PF01758 Sodium Bile acid symporter family D3M96_09045 PF17768 RecJ OB domain D3M96_09045 PF02272 DHHA1 domain D3M96_09045 PF01368 DHH family D3M96_09055 PF02687 FtsX-like permease family D3M96_09055 PF12704 MacB-like periplasmic core domain D3M96_09060 PF00005 ABC transporter D3M96_09065 PF01026 TatD related DNase D3M96_09070 PF00753 Metallo-beta-lactamase superfamily D3M96_09070 PF03772 Competence protein D3M96_09075 PF12697 Alpha/beta hydrolase family D3M96_09080 PF02811 PHP domain D3M96_09085 PF01272 Transcription elongation factor, GreA/GreB, C-term D3M96_09085 PF03449 Transcription elongation factor, N-terminal D3M96_09090 PF02769 AIR synthase related protein, C-terminal domain D3M96_09090 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal D3M96_09090 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain D3M96_09095 PF00571 CBS domain D3M96_09095 PF00478 IMP dehydrogenase / GMP reductase domain D3M96_09105 PF02540 NAD synthase D3M96_09105 PF00958 GMP synthase C terminal domain D3M96_09105 PF00117 Glutamine amidotransferase class-I D3M96_09115 PF00239 Resolvase, N terminal domain D3M96_09115 PF02796 Helix-turn-helix domain of resolvase D3M96_09135 PF10544 T5orf172 domain D3M96_09155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_09155 PF03466 LysR substrate binding domain D3M96_09160 PF08267 Cobalamin-independent synthase, N-terminal domain D3M96_09160 PF01717 Cobalamin-independent synthase, Catalytic domain D3M96_09170 PF01717 Cobalamin-independent synthase, Catalytic domain D3M96_09180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3M96_09180 PF02770 Acyl-CoA dehydrogenase, middle domain D3M96_09180 PF18158 Adaptive response protein AidB N-terminal domain D3M96_09195 PF13280 WYL domain D3M96_09195 PF08279 HTH domain D3M96_09200 PF02492 CobW/HypB/UreG, nucleotide-binding domain D3M96_09200 PF07683 Cobalamin synthesis protein cobW C-terminal domain D3M96_09205 PF02649 Type I GTP cyclohydrolase folE2 D3M96_09210 PF01809 Putative membrane protein insertion efficiency factor D3M96_09220 PF01979 Amidohydrolase family D3M96_09225 PF01475 Ferric uptake regulator family D3M96_09230 PF01502 Phosphoribosyl-AMP cyclohydrolase D3M96_09245 PF14552 Tautomerase enzyme D3M96_09250 PF00970 Oxidoreductase FAD-binding domain D3M96_09250 PF00175 Oxidoreductase NAD-binding domain D3M96_09250 PF00042 Globin D3M96_09260 PF03060 Nitronate monooxygenase D3M96_09265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_09265 PF03466 LysR substrate binding domain D3M96_09290 PF02798 Glutathione S-transferase, N-terminal domain D3M96_09295 PF03466 LysR substrate binding domain D3M96_09295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_09315 PF00293 NUDIX domain D3M96_09320 PF02798 Glutathione S-transferase, N-terminal domain D3M96_09325 PF00574 Clp protease D3M96_09345 PF12833 Helix-turn-helix domain D3M96_09350 PF00891 O-methyltransferase domain D3M96_09360 PF00899 ThiF family D3M96_09360 PF00581 Rhodanese-like domain D3M96_09365 PF14464 Prokaryotic homologs of the JAB domain D3M96_09370 PF02597 ThiS family D3M96_09375 PF02515 CoA-transferase family III D3M96_09380 PF13193 AMP-binding enzyme C-terminal domain D3M96_09380 PF00501 AMP-binding enzyme D3M96_09385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3M96_09385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3M96_09385 PF02770 Acyl-CoA dehydrogenase, middle domain D3M96_09405 PF02627 Carboxymuconolactone decarboxylase family D3M96_09410 PF01022 Bacterial regulatory protein, arsR family D3M96_09430 PF12833 Helix-turn-helix domain D3M96_09430 PF02311 AraC-like ligand binding domain D3M96_09435 PF00682 HMGL-like D3M96_09435 PF08502 LeuA allosteric (dimerisation) domain D3M96_09450 PF03466 LysR substrate binding domain D3M96_09450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_09455 PF13378 Enolase C-terminal domain-like D3M96_09455 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D3M96_09460 PF00775 Dioxygenase D3M96_09460 PF04444 Catechol dioxygenase N terminus D3M96_09465 PF01144 Coenzyme A transferase D3M96_09470 PF01144 Coenzyme A transferase D3M96_09475 PF12146 Serine aminopeptidase, S33 D3M96_09480 PF02426 Muconolactone delta-isomerase D3M96_09485 PF03594 Benzoate membrane transport protein D3M96_09490 PF01926 50S ribosome-binding GTPase D3M96_09495 PF01926 50S ribosome-binding GTPase D3M96_09500 PF02535 ZIP Zinc transporter D3M96_09505 PF00005 ABC transporter D3M96_09510 PF00850 Histone deacetylase domain D3M96_09515 PF00196 Bacterial regulatory proteins, luxR family D3M96_09515 PF00072 Response regulator receiver domain D3M96_09520 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D3M96_09520 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D3M96_09550 PF12802 MarR family D3M96_09555 PF01494 FAD binding domain D3M96_09560 PF07690 Major Facilitator Superfamily D3M96_09570 PF01168 Alanine racemase, N-terminal domain D3M96_09575 PF00155 Aminotransferase class I and II D3M96_09575 PF00392 Bacterial regulatory proteins, gntR family D3M96_09580 PF00892 EamA-like transporter family D3M96_09590 PF08774 VRR-NUC domain D3M96_09590 PF18081 Fanconi anemia-associated nuclease SAP domain D3M96_09600 PF01266 FAD dependent oxidoreductase D3M96_09605 PF00890 FAD binding domain D3M96_09610 PF02445 Quinolinate synthetase A protein D3M96_09615 PF00248 Aldo/keto reductase family D3M96_09645 PF00583 Acetyltransferase (GNAT) family D3M96_09650 PF03006 Haemolysin-III related D3M96_09655 PF07411 Domain of unknown function (DUF1508) D3M96_09665 PF00083 Sugar (and other) transporter D3M96_09670 PF01425 Amidase D3M96_09705 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_09710 PF00005 ABC transporter D3M96_09730 PF02830 V4R domain D3M96_09730 PF00158 Sigma-54 interaction domain D3M96_09730 PF02954 Bacterial regulatory protein, Fis family D3M96_09730 PF06505 Activator of aromatic catabolism D3M96_09735 PF06099 Phenol hydroxylase subunit D3M96_09740 PF02332 Methane/Phenol/Toluene Hydroxylase D3M96_09745 PF02406 MmoB/DmpM family D3M96_09750 PF04945 YHS domain D3M96_09750 PF02332 Methane/Phenol/Toluene Hydroxylase D3M96_09755 PF04663 Phenol hydroxylase conserved region D3M96_09760 PF00111 2Fe-2S iron-sulfur cluster binding domain D3M96_09760 PF00175 Oxidoreductase NAD-binding domain D3M96_09760 PF00970 Oxidoreductase FAD-binding domain D3M96_09765 PF00848 Ring hydroxylating alpha subunit (catalytic domain) D3M96_09765 PF00355 Rieske [2Fe-2S] domain D3M96_09775 PF03466 LysR substrate binding domain D3M96_09775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_09780 PF00848 Ring hydroxylating alpha subunit (catalytic domain) D3M96_09780 PF00355 Rieske [2Fe-2S] domain D3M96_09785 PF00866 Ring hydroxylating beta subunit D3M96_09790 PF00175 Oxidoreductase NAD-binding domain D3M96_09790 PF00970 Oxidoreductase FAD-binding domain D3M96_09790 PF00111 2Fe-2S iron-sulfur cluster binding domain D3M96_09795 PF00106 short chain dehydrogenase D3M96_09800 PF07690 Major Facilitator Superfamily D3M96_09810 PF01810 LysE type translocator D3M96_09820 PF00356 Bacterial regulatory proteins, lacI family D3M96_09830 PF01979 Amidohydrolase family D3M96_09835 PF00860 Permease family D3M96_09850 PF16200 C-terminal region of band_7 D3M96_09850 PF01145 SPFH domain / Band 7 family D3M96_09855 PF01957 NfeD-like C-terminal, partner-binding D3M96_09860 PF13649 Methyltransferase domain D3M96_09870 PF03891 Domain of unknown function (DUF333) D3M96_09880 PF00294 pfkB family carbohydrate kinase D3M96_09890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D3M96_09890 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D3M96_09890 PF02824 TGS domain D3M96_09890 PF03129 Anticodon binding domain D3M96_09895 PF00707 Translation initiation factor IF-3, C-terminal domain D3M96_09895 PF05198 Translation initiation factor IF-3, N-terminal domain D3M96_09900 PF02951 Prokaryotic glutathione synthetase, N-terminal domain D3M96_09900 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain D3M96_09910 PF00381 PTS HPr component phosphorylation site D3M96_09915 PF05524 PEP-utilising enzyme, N-terminal D3M96_09915 PF00391 PEP-utilising enzyme, mobile domain D3M96_09915 PF02896 PEP-utilising enzyme, TIM barrel domain D3M96_09940 PF01078 Magnesium chelatase, subunit ChlI D3M96_09940 PF13335 Magnesium chelatase, subunit ChlI C-terminal D3M96_09950 PF01632 Ribosomal protein L35 D3M96_09955 PF00453 Ribosomal protein L20 D3M96_09960 PF01409 tRNA synthetases class II core domain (F) D3M96_09960 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D3M96_09965 PF03484 tRNA synthetase B5 domain D3M96_09965 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D3M96_09965 PF01588 Putative tRNA binding domain D3M96_09965 PF03483 B3/4 domain D3M96_09965 PF03147 Ferredoxin-fold anticodon binding domain D3M96_09970 PF00216 Bacterial DNA-binding protein D3M96_09980 PF04305 Protein of unknown function (DUF455) D3M96_09990 PF00005 ABC transporter D3M96_09990 PF00664 ABC transporter transmembrane region D3M96_09995 PF02082 Transcriptional regulator D3M96_10000 PF01458 Uncharacterized protein family (UPF0051) D3M96_10005 PF00005 ABC transporter D3M96_10010 PF01458 Uncharacterized protein family (UPF0051) D3M96_10015 PF00266 Aminotransferase class-V D3M96_10020 PF01592 NifU-like N terminal domain D3M96_10025 PF01883 Iron-sulfur cluster assembly protein D3M96_10030 PF00196 Bacterial regulatory proteins, luxR family D3M96_10030 PF00072 Response regulator receiver domain D3M96_10040 PF03783 Curli production assembly/transport component CsgG D3M96_10045 PF10614 Type VIII secretion system (T8SS), CsgF protein D3M96_10060 PF00535 Glycosyl transferase family 2 D3M96_10065 PF14883 Hypothetical glycosyl hydrolase family 13 D3M96_10065 PF01522 Polysaccharide deacetylase D3M96_10085 PF00313 'Cold-shock' DNA-binding domain D3M96_10100 PF13005 zinc-finger binding domain of transposase IS66 D3M96_10100 PF03050 Transposase IS66 family D3M96_10100 PF13817 IS66 C-terminal element D3M96_10100 PF13007 Transposase C of IS166 homeodomain D3M96_10135 PF01380 SIS domain D3M96_10135 PF01418 Helix-turn-helix domain, rpiR family D3M96_10140 PF00291 Pyridoxal-phosphate dependent enzyme D3M96_10145 PF01546 Peptidase family M20/M25/M40 D3M96_10145 PF07687 Peptidase dimerisation domain D3M96_10150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3M96_10155 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_10160 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_10165 PF00005 ABC transporter D3M96_10165 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3M96_10170 PF00795 Carbon-nitrogen hydrolase D3M96_10175 PF01546 Peptidase family M20/M25/M40 D3M96_10175 PF07687 Peptidase dimerisation domain D3M96_10180 PF07364 Metallopeptidase family M81 D3M96_10180 PF07171 MlrC C-terminus D3M96_10230 PF01266 FAD dependent oxidoreductase D3M96_10245 PF03781 Sulfatase-modifying factor enzyme 1 D3M96_10260 PF02386 Cation transport protein D3M96_10265 PF02254 TrkA-N domain D3M96_10265 PF02080 TrkA-C domain D3M96_10270 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D3M96_10280 PF09424 Yqey-like protein D3M96_10285 PF07733 Bacterial DNA polymerase III alpha NTPase domain D3M96_10285 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D3M96_10285 PF14579 Helix-hairpin-helix motif D3M96_10285 PF02811 PHP domain D3M96_10320 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_10325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_10325 PF03466 LysR substrate binding domain D3M96_10330 PF00768 D-alanyl-D-alanine carboxypeptidase D3M96_10340 PF01618 MotA/TolQ/ExbB proton channel family D3M96_10345 PF13677 Membrane MotB of proton-channel complex MotA/MotB D3M96_10345 PF00691 OmpA family D3M96_10365 PF00106 short chain dehydrogenase D3M96_10370 PF00677 Lumazine binding domain D3M96_10380 PF00206 Lyase D3M96_10380 PF10415 Fumarase C C-terminus D3M96_10385 PF00375 Sodium:dicarboxylate symporter family D3M96_10390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_10390 PF00512 His Kinase A (phospho-acceptor) domain D3M96_10390 PF02743 Cache domain D3M96_10395 PF00072 Response regulator receiver domain D3M96_10395 PF00158 Sigma-54 interaction domain D3M96_10395 PF02954 Bacterial regulatory protein, Fis family D3M96_10400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_10400 PF03466 LysR substrate binding domain D3M96_10405 PF00890 FAD binding domain D3M96_10405 PF14537 Cytochrome c3 D3M96_10415 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_10420 PF00384 Molybdopterin oxidoreductase D3M96_10420 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3M96_10420 PF01568 Molydopterin dinucleotide binding domain D3M96_10425 PF03916 Polysulphide reductase, NrfD D3M96_10430 PF13247 4Fe-4S dicluster domain D3M96_10435 PF00593 TonB dependent receptor D3M96_10435 PF07715 TonB-dependent Receptor Plug Domain D3M96_10445 PF03069 Acetamidase/Formamidase family D3M96_10450 PF01979 Amidohydrolase family D3M96_10455 PF00860 Permease family D3M96_10460 PF00011 Hsp20/alpha crystallin family D3M96_10475 PF07690 Major Facilitator Superfamily D3M96_10495 PF01494 FAD binding domain D3M96_10505 PF09297 NADH pyrophosphatase zinc ribbon domain D3M96_10505 PF00293 NUDIX domain D3M96_10505 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain D3M96_10510 PF03755 YicC-like family, N-terminal region D3M96_10510 PF08340 Domain of unknown function (DUF1732) D3M96_10515 PF00149 Calcineurin-like phosphoesterase D3M96_10520 PF13175 AAA ATPase domain D3M96_10525 PF01138 3' exoribonuclease family, domain 1 D3M96_10525 PF03725 3' exoribonuclease family, domain 2 D3M96_10530 PF01725 Ham1 family D3M96_10535 PF06969 HemN C-terminal domain D3M96_10535 PF04055 Radical SAM superfamily D3M96_10545 PF13673 Acetyltransferase (GNAT) domain D3M96_10555 PF08402 TOBE domain D3M96_10555 PF00005 ABC transporter D3M96_10560 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_10565 PF13416 Bacterial extracellular solute-binding protein D3M96_10570 PF00970 Oxidoreductase FAD-binding domain D3M96_10570 PF00175 Oxidoreductase NAD-binding domain D3M96_10575 PF01042 Endoribonuclease L-PSP D3M96_10580 PF00270 DEAD/DEAH box helicase D3M96_10580 PF00271 Helicase conserved C-terminal domain D3M96_10580 PF17191 RecG wedge domain D3M96_10585 PF03466 LysR substrate binding domain D3M96_10585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_10590 PF00210 Ferritin-like domain D3M96_10595 PF13458 Periplasmic binding protein D3M96_10600 PF17912 MalK OB fold domain D3M96_10600 PF00005 ABC transporter D3M96_10605 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_10610 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_10615 PF13416 Bacterial extracellular solute-binding protein D3M96_10620 PF14748 Pyrroline-5-carboxylate reductase dimerisation D3M96_10620 PF03807 NADP oxidoreductase coenzyme F420-dependent D3M96_10625 PF13458 Periplasmic binding protein D3M96_10630 PF02653 Branched-chain amino acid transport system / permease component D3M96_10635 PF11862 Domain of unknown function (DUF3382) D3M96_10635 PF02653 Branched-chain amino acid transport system / permease component D3M96_10640 PF00005 ABC transporter D3M96_10640 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3M96_10645 PF00005 ABC transporter D3M96_10655 PF02798 Glutathione S-transferase, N-terminal domain D3M96_10655 PF00043 Glutathione S-transferase, C-terminal domain D3M96_10660 PF00326 Prolyl oligopeptidase family D3M96_10665 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3M96_10665 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3M96_10675 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D3M96_10675 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D3M96_10680 PF00206 Lyase D3M96_10680 PF10415 Fumarase C C-terminus D3M96_10685 PF07995 Glucose / Sorbosone dehydrogenase D3M96_10690 PF00582 Universal stress protein family D3M96_10695 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3M96_10700 PF07690 Major Facilitator Superfamily D3M96_10710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_10710 PF03466 LysR substrate binding domain D3M96_10720 PF00403 Heavy-metal-associated domain D3M96_10725 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ D3M96_10740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_10740 PF03466 LysR substrate binding domain D3M96_10745 PF00589 Phage integrase family D3M96_10745 PF02899 Phage integrase, N-terminal SAM-like domain D3M96_10755 PF00394 Multicopper oxidase D3M96_10755 PF07731 Multicopper oxidase D3M96_10755 PF07732 Multicopper oxidase D3M96_10770 PF03976 Polyphosphate kinase 2 (PPK2) D3M96_10820 PF04717 Type VI secretion system, phage-baseplate injector D3M96_10825 PF07724 AAA domain (Cdc48 subfamily) D3M96_10825 PF00004 ATPase family associated with various cellular activities (AAA) D3M96_10825 PF17871 AAA lid domain D3M96_10825 PF10431 C-terminal, D2-small domain, of ClpB protein D3M96_10890 PF01292 Prokaryotic cytochrome b561 D3M96_10900 PF04264 YceI-like domain D3M96_10905 PF03960 ArsC family D3M96_10910 PF02798 Glutathione S-transferase, N-terminal domain D3M96_10910 PF00043 Glutathione S-transferase, C-terminal domain D3M96_10920 PF03358 NADPH-dependent FMN reductase D3M96_10935 PF01026 TatD related DNase D3M96_10940 PF09115 DNA polymerase III, delta subunit, C terminal D3M96_10950 PF02618 YceG-like family D3M96_10955 PF01571 Aminomethyltransferase folate-binding domain D3M96_10960 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3M96_10960 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3M96_10970 PF02770 Acyl-CoA dehydrogenase, middle domain D3M96_10970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3M96_10970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3M96_10975 PF03658 RnfH family Ubiquitin D3M96_10980 PF03364 Polyketide cyclase / dehydrase and lipid transport D3M96_10985 PF01668 SmpB protein D3M96_10990 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3M96_11000 PF02896 PEP-utilising enzyme, TIM barrel domain D3M96_11000 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D3M96_11000 PF00391 PEP-utilising enzyme, mobile domain D3M96_11005 PF03618 Kinase/pyrophosphorylase D3M96_11010 PF01425 Amidase D3M96_11015 PF00588 SpoU rRNA Methylase family D3M96_11015 PF08032 RNA 2'-O ribose methyltransferase substrate binding D3M96_11020 PF01351 Ribonuclease HII D3M96_11025 PF02684 Lipid-A-disaccharide synthetase D3M96_11030 PF00132 Bacterial transferase hexapeptide (six repeats) D3M96_11030 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D3M96_11035 PF07977 FabA-like domain D3M96_11040 PF00132 Bacterial transferase hexapeptide (six repeats) D3M96_11040 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D3M96_11045 PF03938 Outer membrane protein (OmpH-like) D3M96_11050 PF01103 Surface antigen D3M96_11050 PF07244 Surface antigen variable number repeat D3M96_11055 PF17820 PDZ domain D3M96_11055 PF13180 PDZ domain D3M96_11055 PF02163 Peptidase family M50 D3M96_11060 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D3M96_11060 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D3M96_11060 PF13288 DXP reductoisomerase C-terminal domain D3M96_11070 PF01255 Putative undecaprenyl diphosphate synthase D3M96_11075 PF01765 Ribosome recycling factor D3M96_11080 PF00696 Amino acid kinase family D3M96_11085 PF00889 Elongation factor TS D3M96_11090 PF00318 Ribosomal protein S2 D3M96_11095 PF00557 Metallopeptidase family M24 D3M96_11100 PF01966 HD domain D3M96_11100 PF01909 Nucleotidyltransferase domain D3M96_11100 PF08335 GlnD PII-uridylyltransferase D3M96_11105 PF01914 MarC family integral membrane protein D3M96_11120 PF00156 Phosphoribosyl transferase domain D3M96_11125 PF02674 Colicin V production protein D3M96_11135 PF02875 Mur ligase family, glutamate ligase domain D3M96_11135 PF08245 Mur ligase middle domain D3M96_11140 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3M96_11140 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3M96_11145 PF02817 e3 binding domain D3M96_11145 PF00364 Biotin-requiring enzyme D3M96_11145 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D3M96_11150 PF00456 Transketolase, thiamine diphosphate binding domain D3M96_11150 PF17831 Pyruvate dehydrogenase E1 component middle domain D3M96_11155 PF00989 PAS fold D3M96_11155 PF00512 His Kinase A (phospho-acceptor) domain D3M96_11155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_11160 PF00072 Response regulator receiver domain D3M96_11160 PF00196 Bacterial regulatory proteins, luxR family D3M96_11165 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D3M96_11165 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D3M96_11170 PF01432 Peptidase family M3 D3M96_11175 PF02630 SCO1/SenC D3M96_11180 PF00009 Elongation factor Tu GTP binding domain D3M96_11180 PF03144 Elongation factor Tu domain 2 D3M96_11180 PF03764 Elongation factor G, domain IV D3M96_11180 PF00679 Elongation factor G C-terminus D3M96_11180 PF14492 Elongation Factor G, domain II D3M96_11190 PF01022 Bacterial regulatory protein, arsR family D3M96_11195 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3M96_11195 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3M96_11210 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ D3M96_11215 PF02321 Outer membrane efflux protein D3M96_11220 PF00873 AcrB/AcrD/AcrF family D3M96_11225 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3M96_11225 PF00529 HlyD membrane-fusion protein of T1SS D3M96_11230 PF00005 ABC transporter D3M96_11250 PF02803 Thiolase, C-terminal domain D3M96_11250 PF00108 Thiolase, N-terminal domain D3M96_11255 PF02803 Thiolase, C-terminal domain D3M96_11255 PF00108 Thiolase, N-terminal domain D3M96_11270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_11270 PF03466 LysR substrate binding domain D3M96_11275 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain D3M96_11275 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain D3M96_11275 PF01276 Orn/Lys/Arg decarboxylase, major domain D3M96_11295 PF00625 Guanylate kinase D3M96_11300 PF01192 RNA polymerase Rpb6 D3M96_11305 PF04607 Region found in RelA / SpoT proteins D3M96_11305 PF13291 ACT domain D3M96_11305 PF02824 TGS domain D3M96_11315 PF03591 AzlC protein D3M96_11320 PF01476 LysM domain D3M96_11320 PF08525 Opacity-associated protein A N-terminal motif D3M96_11320 PF01551 Peptidase family M23 D3M96_11325 PF09312 SurA N-terminal domain D3M96_11325 PF00639 PPIC-type PPIASE domain D3M96_11330 PF03009 Glycerophosphoryl diester phosphodiesterase family D3M96_11335 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ D3M96_11340 PF01479 S4 domain D3M96_11340 PF00849 RNA pseudouridylate synthase D3M96_11345 PF04345 Chorismate lyase D3M96_11350 PF07690 Major Facilitator Superfamily D3M96_11355 PF00248 Aldo/keto reductase family D3M96_11360 PF00543 Nitrogen regulatory protein P-II D3M96_11365 PF00924 Mechanosensitive ion channel D3M96_11370 PF14698 Argininosuccinate lyase C-terminal D3M96_11370 PF00206 Lyase D3M96_11380 PF01804 Penicillin amidase D3M96_11385 PF01266 FAD dependent oxidoreductase D3M96_11395 PF05958 tRNA (Uracil-5-)-methyltransferase D3M96_11400 PF01551 Peptidase family M23 D3M96_11400 PF01476 LysM domain D3M96_11410 PF01975 Survival protein SurE D3M96_11415 PF02660 Glycerol-3-phosphate acyltransferase D3M96_11420 PF00814 Glycoprotease family D3M96_11425 PF00860 Permease family D3M96_11430 PF00085 Thioredoxin D3M96_11445 PF01205 Uncharacterized protein family UPF0029 D3M96_11450 PF12848 ABC transporter D3M96_11450 PF00005 ABC transporter D3M96_11455 PF02016 LD-carboxypeptidase N-terminal domain D3M96_11455 PF17676 LD-carboxypeptidase C-terminal domain D3M96_11460 PF14437 MafB19-like deaminase D3M96_11465 PF00005 ABC transporter D3M96_11470 PF01061 ABC-2 type transporter D3M96_11475 PF17200 Single Cache domain 2 D3M96_11475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3M96_11475 PF00672 HAMP domain D3M96_11480 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_11485 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component D3M96_11490 PF03480 Bacterial extracellular solute-binding protein, family 7 D3M96_11495 PF01266 FAD dependent oxidoreductase D3M96_11505 PF05690 Thiazole biosynthesis protein ThiG D3M96_11510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3M96_11510 PF00205 Thiamine pyrophosphate enzyme, central domain D3M96_11510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3M96_11515 PF07728 AAA domain (dynein-related subfamily) D3M96_11515 PF08406 CbbQ/NirQ/NorQ C-terminal D3M96_11515 PF12556 Cobaltochelatase CobS subunit N terminal D3M96_11525 PF09339 IclR helix-turn-helix domain D3M96_11525 PF01614 Bacterial transcriptional regulator D3M96_11530 PF01515 Phosphate acetyl/butaryl transferase D3M96_11535 PF01925 Sulfite exporter TauE/SafE D3M96_11545 PF04461 Protein of unknown function (DUF520) D3M96_11550 PF13193 AMP-binding enzyme C-terminal domain D3M96_11550 PF00501 AMP-binding enzyme D3M96_11555 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D3M96_11560 PF00117 Glutamine amidotransferase class-I D3M96_11560 PF02540 NAD synthase D3M96_11560 PF00958 GMP synthase C terminal domain D3M96_11565 PF12833 Helix-turn-helix domain D3M96_11570 PF13593 SBF-like CPA transporter family (DUF4137) D3M96_11580 PF08534 Redoxin D3M96_11585 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D3M96_11590 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_11600 PF01416 tRNA pseudouridine synthase D3M96_11610 PF02774 Semialdehyde dehydrogenase, dimerisation domain D3M96_11610 PF01118 Semialdehyde dehydrogenase, NAD binding domain D3M96_11615 PF00180 Isocitrate/isopropylmalate dehydrogenase D3M96_11620 PF00694 Aconitase C-terminal domain D3M96_11625 PF00330 Aconitase family (aconitate hydratase) D3M96_11630 PF02627 Carboxymuconolactone decarboxylase family D3M96_11640 PF00196 Bacterial regulatory proteins, luxR family D3M96_11640 PF00072 Response regulator receiver domain D3M96_11645 PF13426 PAS domain D3M96_11645 PF00072 Response regulator receiver domain D3M96_11645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_11645 PF00512 His Kinase A (phospho-acceptor) domain D3M96_11645 PF08448 PAS fold D3M96_11655 PF01264 Chorismate synthase D3M96_11660 PF02696 Uncharacterized ACR, YdiU/UPF0061 family D3M96_11670 PF03631 Virulence factor BrkB D3M96_11680 PF01207 Dihydrouridine synthase (Dus) D3M96_11685 PF01636 Phosphotransferase enzyme family D3M96_11710 PF00437 Type II/IV secretion system protein D3M96_11715 PF04972 BON domain D3M96_11715 PF13629 Pilus formation protein N terminal region D3M96_11715 PF00263 Bacterial type II and III secretion system protein D3M96_11750 PF07715 TonB-dependent Receptor Plug Domain D3M96_11750 PF00593 TonB dependent receptor D3M96_11750 PF07660 Secretin and TonB N terminus short domain D3M96_11755 PF04773 FecR protein D3M96_11755 PF16220 Domain of unknown function (DUF4880) D3M96_11760 PF04542 Sigma-70 region 2 D3M96_11760 PF08281 Sigma-70, region 4 D3M96_11765 PF01557 Fumarylacetoacetate (FAA) hydrolase family D3M96_11770 PF00719 Inorganic pyrophosphatase D3M96_11780 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase D3M96_11790 PF03900 Porphobilinogen deaminase, C-terminal domain D3M96_11790 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D3M96_11795 PF03741 Integral membrane protein TerC family D3M96_11800 PF02629 CoA binding domain D3M96_11800 PF00549 CoA-ligase D3M96_11805 PF08442 ATP-grasp domain D3M96_11805 PF00549 CoA-ligase D3M96_11815 PF01717 Cobalamin-independent synthase, Catalytic domain D3M96_11815 PF08267 Cobalamin-independent synthase, N-terminal domain D3M96_11820 PF03466 LysR substrate binding domain D3M96_11820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_11825 PF02631 RecX family D3M96_11835 PF00072 Response regulator receiver domain D3M96_11835 PF00486 Transcriptional regulatory protein, C terminal D3M96_11840 PF00512 His Kinase A (phospho-acceptor) domain D3M96_11840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_11845 PF00083 Sugar (and other) transporter D3M96_11845 PF08946 Osmosensory transporter coiled coil D3M96_11850 PF04381 Putative exonuclease, RdgC D3M96_11860 PF13193 AMP-binding enzyme C-terminal domain D3M96_11860 PF00501 AMP-binding enzyme D3M96_11865 PF00378 Enoyl-CoA hydratase/isomerase D3M96_11870 PF04341 Protein of unknown function, DUF485 D3M96_11875 PF00474 Sodium:solute symporter family D3M96_11880 PF00171 Aldehyde dehydrogenase family D3M96_11885 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D3M96_11885 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D3M96_11900 PF00912 Transglycosylase D3M96_11900 PF00905 Penicillin binding protein transpeptidase domain D3M96_11905 PF07703 Alpha-2-macroglobulin bait region domain D3M96_11905 PF01835 MG2 domain D3M96_11905 PF00207 Alpha-2-macroglobulin family D3M96_11915 PF03060 Nitronate monooxygenase D3M96_11920 PF06969 HemN C-terminal domain D3M96_11920 PF04055 Radical SAM superfamily D3M96_11925 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter D3M96_11925 PF13244 Domain of unknown function (DUF4040) D3M96_11925 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D3M96_11925 PF00361 Proton-conducting membrane transporter D3M96_11930 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D3M96_11935 PF00361 Proton-conducting membrane transporter D3M96_11945 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) D3M96_11960 PF02705 K+ potassium transporter D3M96_11965 PF00512 His Kinase A (phospho-acceptor) domain D3M96_11965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_11965 PF08521 Two-component sensor kinase N-terminal D3M96_11970 PF00486 Transcriptional regulatory protein, C terminal D3M96_11970 PF00072 Response regulator receiver domain D3M96_11975 PF02472 Biopolymer transport protein ExbD/TolR D3M96_11980 PF01618 MotA/TolQ/ExbB proton channel family D3M96_11990 PF12857 TOBE-like domain D3M96_11990 PF00005 ABC transporter D3M96_11995 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_12000 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_12025 PF00313 'Cold-shock' DNA-binding domain D3M96_12050 PF00216 Bacterial DNA-binding protein D3M96_12055 PF14824 Sirohaem biosynthesis protein central D3M96_12055 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3M96_12055 PF10414 Sirohaem synthase dimerisation region D3M96_12060 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3M96_12075 PF17805 AsnC-like ligand binding domain D3M96_12080 PF17805 AsnC-like ligand binding domain D3M96_12085 PF06463 Molybdenum Cofactor Synthesis C D3M96_12085 PF04055 Radical SAM superfamily D3M96_12090 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3M96_12090 PF14824 Sirohaem biosynthesis protein central D3M96_12090 PF10414 Sirohaem synthase dimerisation region D3M96_12095 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3M96_12100 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3M96_12105 PF00392 Bacterial regulatory proteins, gntR family D3M96_12105 PF00155 Aminotransferase class I and II D3M96_12110 PF01053 Cys/Met metabolism PLP-dependent enzyme D3M96_12115 PF00588 SpoU rRNA Methylase family D3M96_12115 PF08032 RNA 2'-O ribose methyltransferase substrate binding D3M96_12120 PF00575 S1 RNA binding domain D3M96_12120 PF00773 RNB domain D3M96_12120 PF08206 Ribonuclease B OB domain D3M96_12120 PF17876 Cold shock domain D3M96_12120 PF08461 Ribonuclease R winged-helix domain D3M96_12135 PF00282 Pyridoxal-dependent decarboxylase conserved domain D3M96_12140 PF13520 Amino acid permease D3M96_12145 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family D3M96_12170 PF08021 Siderophore-interacting FAD-binding domain D3M96_12170 PF04954 Siderophore-interacting protein D3M96_12190 PF06750 Bacterial Peptidase A24 N-terminal domain D3M96_12190 PF01478 Type IV leader peptidase family D3M96_12200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_12200 PF03466 LysR substrate binding domain D3M96_12205 PF00005 ABC transporter D3M96_12205 PF08402 TOBE domain D3M96_12215 PF13419 Haloacid dehalogenase-like hydrolase D3M96_12225 PF01266 FAD dependent oxidoreductase D3M96_12240 PF01738 Dienelactone hydrolase family D3M96_12245 PF12843 Putative quorum-sensing-regulated virulence factor D3M96_12250 PF02798 Glutathione S-transferase, N-terminal domain D3M96_12260 PF02678 Pirin D3M96_12260 PF05726 Pirin C-terminal cupin domain D3M96_12270 PF00795 Carbon-nitrogen hydrolase D3M96_12275 PF07690 Major Facilitator Superfamily D3M96_12280 PF07690 Major Facilitator Superfamily D3M96_12285 PF12833 Helix-turn-helix domain D3M96_12285 PF02311 AraC-like ligand binding domain D3M96_12290 PF03594 Benzoate membrane transport protein D3M96_12300 PF03746 LamB/YcsF family D3M96_12305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_12305 PF03466 LysR substrate binding domain D3M96_12310 PF00111 2Fe-2S iron-sulfur cluster binding domain D3M96_12310 PF01799 [2Fe-2S] binding domain D3M96_12315 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D3M96_12315 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D3M96_12325 PF01979 Amidohydrolase family D3M96_12330 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family D3M96_12335 PF00072 Response regulator receiver domain D3M96_12335 PF00486 Transcriptional regulatory protein, C terminal D3M96_12340 PF00512 His Kinase A (phospho-acceptor) domain D3M96_12340 PF00672 HAMP domain D3M96_12340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_12345 PF03979 Sigma-70 factor, region 1.1 D3M96_12345 PF00140 Sigma-70 factor, region 1.2 D3M96_12345 PF04542 Sigma-70 region 2 D3M96_12345 PF04545 Sigma-70, region 4 D3M96_12345 PF04546 Sigma-70, non-essential region D3M96_12345 PF04539 Sigma-70 region 3 D3M96_12350 PF01807 CHC2 zinc finger D3M96_12350 PF08275 DNA primase catalytic core, N-terminal domain D3M96_12350 PF08278 DNA primase DnaG DnaB-binding D3M96_12350 PF10410 DnaB-helicase binding domain of primase D3M96_12355 PF01165 Ribosomal protein S21 D3M96_12360 PF00156 Phosphoribosyl transferase domain D3M96_12365 PF00709 Adenylosuccinate synthetase D3M96_12370 PF13393 Histidyl-tRNA synthetase D3M96_12375 PF01145 SPFH domain / Band 7 family D3M96_12380 PF12221 Bacterial membrane protein N terminal D3M96_12380 PF01145 SPFH domain / Band 7 family D3M96_12385 PF01926 50S ribosome-binding GTPase D3M96_12385 PF16360 GTP-binding GTPase Middle Region D3M96_12385 PF13167 GTP-binding GTPase N-terminal D3M96_12390 PF17209 Hfq protein D3M96_12395 PF00155 Aminotransferase class I and II D3M96_12400 PF01926 50S ribosome-binding GTPase D3M96_12400 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D3M96_12405 PF13360 PQQ-like domain D3M96_12410 PF09976 Tetratricopeptide repeat-like domain D3M96_12415 PF13393 Histidyl-tRNA synthetase D3M96_12415 PF03129 Anticodon binding domain D3M96_12420 PF04551 GcpE protein D3M96_12430 PF04055 Radical SAM superfamily D3M96_12435 PF00334 Nucleoside diphosphate kinase D3M96_12440 PF10458 Valyl tRNA synthetase tRNA binding arm D3M96_12440 PF08264 Anticodon-binding domain of tRNA D3M96_12440 PF00133 tRNA synthetases class I (I, L, M and V) D3M96_12445 PF01746 tRNA (Guanine-1)-methyltransferase D3M96_12450 PF01782 RimM N-terminal domain D3M96_12455 PF00886 Ribosomal protein S16 D3M96_12460 PF01206 Sulfurtransferase TusA D3M96_12465 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D3M96_12465 PF01411 tRNA synthetases class II (A) D3M96_12465 PF02272 DHHA1 domain D3M96_12480 PF00576 HIUase/Transthyretin family D3M96_12510 PF13416 Bacterial extracellular solute-binding protein D3M96_12515 PF01266 FAD dependent oxidoreductase D3M96_12520 PF00970 Oxidoreductase FAD-binding domain D3M96_12520 PF00111 2Fe-2S iron-sulfur cluster binding domain D3M96_12520 PF00175 Oxidoreductase NAD-binding domain D3M96_12525 PF00521 DNA gyrase/topoisomerase IV, subunit A D3M96_12530 PF00986 DNA gyrase B subunit, carboxyl terminus D3M96_12530 PF01751 Toprim domain D3M96_12530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_12530 PF00204 DNA gyrase B D3M96_12535 PF00085 Thioredoxin D3M96_12540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3M96_12540 PF07498 Rho termination factor, N-terminal domain D3M96_12540 PF07497 Rho termination factor, RNA-binding domain D3M96_12545 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D3M96_12545 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D3M96_12560 PF08335 GlnD PII-uridylyltransferase D3M96_12560 PF03710 Glutamate-ammonia ligase adenylyltransferase D3M96_12565 PF02677 Epoxyqueuosine reductase QueH D3M96_12570 PF10431 C-terminal, D2-small domain, of ClpB protein D3M96_12570 PF02861 Clp amino terminal domain, pathogenicity island component D3M96_12570 PF17871 AAA lid domain D3M96_12570 PF07724 AAA domain (Cdc48 subfamily) D3M96_12570 PF00004 ATPase family associated with various cellular activities (AAA) D3M96_12575 PF00027 Cyclic nucleotide-binding domain D3M96_12575 PF13545 Crp-like helix-turn-helix domain D3M96_12590 PF12801 4Fe-4S binding domain D3M96_12590 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase D3M96_12590 PF13746 4Fe-4S dicluster domain D3M96_12595 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3M96_12595 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP D3M96_12610 PF00115 Cytochrome C and Quinol oxidase polypeptide I D3M96_12620 PF00403 Heavy-metal-associated domain D3M96_12630 PF00463 Isocitrate lyase family D3M96_12635 PF14489 QueF-like protein D3M96_12635 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term D3M96_12650 PF01066 CDP-alcohol phosphatidyltransferase D3M96_12655 PF01541 GIY-YIG catalytic domain D3M96_12655 PF02151 UvrB/uvrC motif D3M96_12655 PF08459 UvrC Helix-hairpin-helix N-terminal D3M96_12660 PF00933 Glycosyl hydrolase family 3 N terminal domain D3M96_12665 PF01648 4'-phosphopantetheinyl transferase superfamily D3M96_12675 PF03061 Thioesterase superfamily D3M96_12680 PF00378 Enoyl-CoA hydratase/isomerase D3M96_12685 PF00171 Aldehyde dehydrogenase family D3M96_12690 PF00970 Oxidoreductase FAD-binding domain D3M96_12690 PF00175 Oxidoreductase NAD-binding domain D3M96_12690 PF00111 2Fe-2S iron-sulfur cluster binding domain D3M96_12695 PF01883 Iron-sulfur cluster assembly protein D3M96_12700 PF05138 Phenylacetic acid catabolic protein D3M96_12705 PF06243 Phenylacetic acid degradation B D3M96_12710 PF05138 Phenylacetic acid catabolic protein D3M96_12715 PF00929 Exonuclease D3M96_12720 PF01435 Peptidase family M48 D3M96_12720 PF16491 CAAX prenyl protease N-terminal, five membrane helices D3M96_12725 PF03193 RsgA GTPase D3M96_12735 PF01245 Ribosomal protein L19 D3M96_12750 PF10417 C-terminal domain of 1-Cys peroxiredoxin D3M96_12750 PF00578 AhpC/TSA family D3M96_12755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3M96_12755 PF12806 Acetyl-CoA dehydrogenase C-terminal like D3M96_12755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3M96_12755 PF02770 Acyl-CoA dehydrogenase, middle domain D3M96_12760 PF00766 Electron transfer flavoprotein FAD-binding domain D3M96_12760 PF01012 Electron transfer flavoprotein domain D3M96_12765 PF01012 Electron transfer flavoprotein domain D3M96_12770 PF00850 Histone deacetylase domain D3M96_12775 PF13406 Transglycosylase SLT domain D3M96_12780 PF00291 Pyridoxal-phosphate dependent enzyme D3M96_12785 PF02811 PHP domain D3M96_12785 PF07733 Bacterial DNA polymerase III alpha NTPase domain D3M96_12785 PF14579 Helix-hairpin-helix motif D3M96_12785 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D3M96_12790 PF01370 NAD dependent epimerase/dehydratase family D3M96_12795 PF00294 pfkB family carbohydrate kinase D3M96_12800 PF18073 Rubredoxin metal binding domain D3M96_12810 PF00216 Bacterial DNA-binding protein D3M96_12815 PF00575 S1 RNA binding domain D3M96_12820 PF02224 Cytidylate kinase D3M96_12825 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D3M96_12830 PF02153 Prephenate dehydrogenase D3M96_12835 PF01817 Chorismate mutase type II D3M96_12835 PF01842 ACT domain D3M96_12835 PF00800 Prephenate dehydratase D3M96_12840 PF00266 Aminotransferase class-V D3M96_12845 PF03989 DNA gyrase C-terminal domain, beta-propeller D3M96_12845 PF00521 DNA gyrase/topoisomerase IV, subunit A D3M96_12850 PF00691 OmpA family D3M96_12860 PF13419 Haloacid dehalogenase-like hydrolase D3M96_12865 PF03466 LysR substrate binding domain D3M96_12865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_12870 PF07690 Major Facilitator Superfamily D3M96_12875 PF11953 Domain of unknown function (DUF3470) D3M96_12875 PF00037 4Fe-4S binding domain D3M96_12885 PF07715 TonB-dependent Receptor Plug Domain D3M96_12885 PF00593 TonB dependent receptor D3M96_12900 PF00199 Catalase D3M96_12900 PF06628 Catalase-related immune-responsive D3M96_12900 PF18011 C-terminal domain found in long catalases D3M96_12910 PF08713 DNA alkylation repair enzyme D3M96_12915 PF01047 MarR family D3M96_12920 PF00155 Aminotransferase class I and II D3M96_12925 PF00440 Bacterial regulatory proteins, tetR family D3M96_12950 PF00155 Aminotransferase class I and II D3M96_12950 PF00392 Bacterial regulatory proteins, gntR family D3M96_12960 PF00043 Glutathione S-transferase, C-terminal domain D3M96_12960 PF02798 Glutathione S-transferase, N-terminal domain D3M96_12970 PF00375 Sodium:dicarboxylate symporter family D3M96_12975 PF01810 LysE type translocator D3M96_12995 PF00474 Sodium:solute symporter family D3M96_13000 PF00072 Response regulator receiver domain D3M96_13000 PF00196 Bacterial regulatory proteins, luxR family D3M96_13005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_13005 PF00512 His Kinase A (phospho-acceptor) domain D3M96_13005 PF01627 Hpt domain D3M96_13005 PF00072 Response regulator receiver domain D3M96_13005 PF00672 HAMP domain D3M96_13015 PF14306 PUA-like domain D3M96_13015 PF01747 ATP-sulfurylase D3M96_13025 PF00144 Beta-lactamase D3M96_13030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_13030 PF03466 LysR substrate binding domain D3M96_13035 PF17284 Spermidine synthase tetramerisation domain D3M96_13040 PF00512 His Kinase A (phospho-acceptor) domain D3M96_13040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_13045 PF00486 Transcriptional regulatory protein, C terminal D3M96_13045 PF00072 Response regulator receiver domain D3M96_13050 PF08447 PAS fold D3M96_13050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3M96_13055 PF01169 Uncharacterized protein family UPF0016 D3M96_13065 PF03466 LysR substrate binding domain D3M96_13065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_13070 PF02525 Flavodoxin-like fold D3M96_13080 PF00925 GTP cyclohydrolase II D3M96_13095 PF03109 ABC1 family D3M96_13100 PF04228 Putative neutral zinc metallopeptidase D3M96_13110 PF00543 Nitrogen regulatory protein P-II D3M96_13115 PF00909 Ammonium Transporter Family D3M96_13120 PF01322 Cytochrome C' D3M96_13125 PF08328 Adenylosuccinate lyase C-terminal D3M96_13125 PF00206 Lyase D3M96_13130 PF13417 Glutathione S-transferase, N-terminal domain D3M96_13130 PF00043 Glutathione S-transferase, C-terminal domain D3M96_13140 PF07859 alpha/beta hydrolase fold D3M96_13145 PF01925 Sulfite exporter TauE/SafE D3M96_13155 PF02913 FAD linked oxidases, C-terminal domain D3M96_13155 PF01565 FAD binding domain D3M96_13160 PF00793 DAHP synthetase I family D3M96_13165 PF04328 Selenoprotein, putative D3M96_13170 PF02554 Carbon starvation protein CstA D3M96_13170 PF13722 5TM C-terminal transporter carbon starvation CstA D3M96_13175 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3M96_13180 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_13185 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_13190 PF00005 ABC transporter D3M96_13195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3M96_13195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3M96_13195 PF00205 Thiamine pyrophosphate enzyme, central domain D3M96_13200 PF00171 Aldehyde dehydrogenase family D3M96_13205 PF03447 Homoserine dehydrogenase, NAD binding domain D3M96_13205 PF01958 Domain of unknown function DUF108 D3M96_13215 PF12697 Alpha/beta hydrolase family D3M96_13220 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_13225 PF00005 ABC transporter D3M96_13240 PF13609 Gram-negative porin D3M96_13245 PF09339 IclR helix-turn-helix domain D3M96_13245 PF01614 Bacterial transcriptional regulator D3M96_13255 PF05721 Phytanoyl-CoA dioxygenase (PhyH) D3M96_13260 PF06339 Ectoine synthase D3M96_13265 PF00202 Aminotransferase class-III D3M96_13270 PF00583 Acetyltransferase (GNAT) family D3M96_13275 PF01047 MarR family D3M96_13280 PF00892 EamA-like transporter family D3M96_13285 PF01523 Putative modulator of DNA gyrase D3M96_13290 PF00816 H-NS histone family D3M96_13300 PF11940 Domain of unknown function (DUF3458) Ig-like fold D3M96_13300 PF17432 Domain of unknown function (DUF3458_C) ARM repeats D3M96_13300 PF01433 Peptidase family M1 domain D3M96_13305 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain D3M96_13310 PF00107 Zinc-binding dehydrogenase D3M96_13310 PF08240 Alcohol dehydrogenase GroES-like domain D3M96_13320 PF00180 Isocitrate/isopropylmalate dehydrogenase D3M96_13325 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3M96_13330 PF05872 Bacterial protein of unknown function (DUF853) D3M96_13335 PF01709 Transcriptional regulator D3M96_13340 PF02844 Phosphoribosylglycinamide synthetase, N domain D3M96_13340 PF02843 Phosphoribosylglycinamide synthetase, C domain D3M96_13340 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D3M96_13345 PF01218 Coproporphyrinogen III oxidase D3M96_13350 PF01467 Cytidylyltransferase-like D3M96_13360 PF02590 Predicted SPOUT methyltransferase D3M96_13365 PF02545 Maf-like protein D3M96_13370 PF13098 Thioredoxin-like domain D3M96_13385 PF01253 Translation initiation factor SUI1 D3M96_13395 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3M96_13395 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3M96_13400 PF14497 Glutathione S-transferase, C-terminal domain D3M96_13400 PF02798 Glutathione S-transferase, N-terminal domain D3M96_13405 PF02401 LytB protein D3M96_13410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D3M96_13415 PF04002 RadC-like JAB domain D3M96_13420 PF01197 Ribosomal protein L31 D3M96_13430 PF01554 MatE D3M96_13435 PF00005 ABC transporter D3M96_13435 PF00571 CBS domain D3M96_13440 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_13455 PF07690 Major Facilitator Superfamily D3M96_13460 PF00830 Ribosomal L28 family D3M96_13465 PF00471 Ribosomal protein L33 D3M96_13470 PF00133 tRNA synthetases class I (I, L, M and V) D3M96_13470 PF08264 Anticodon-binding domain of tRNA D3M96_13470 PF09334 tRNA synthetases class I (M) D3M96_13470 PF13603 Leucyl-tRNA synthetase, Domain 2 D3M96_13485 PF00171 Aldehyde dehydrogenase family D3M96_13495 PF02926 THUMP domain D3M96_13495 PF01170 Putative RNA methylase family UPF0020 D3M96_13505 PF01430 Hsp33 protein D3M96_13515 PF04977 Septum formation initiator D3M96_13520 PF00113 Enolase, C-terminal TIM barrel domain D3M96_13520 PF03952 Enolase, N-terminal domain D3M96_13530 PF07690 Major Facilitator Superfamily D3M96_13545 PF00793 DAHP synthetase I family D3M96_13550 PF00117 Glutamine amidotransferase class-I D3M96_13550 PF06418 CTP synthase N-terminus D3M96_13555 PF00557 Metallopeptidase family M24 D3M96_13555 PF01321 Creatinase/Prolidase N-terminal domain D3M96_13560 PF01144 Coenzyme A transferase D3M96_13565 PF01144 Coenzyme A transferase D3M96_13585 PF00892 EamA-like transporter family D3M96_13590 PF16177 Acetyl-coenzyme A synthetase N-terminus D3M96_13590 PF00501 AMP-binding enzyme D3M96_13590 PF13193 AMP-binding enzyme C-terminal domain D3M96_13600 PF00877 NlpC/P60 family D3M96_13610 PF03466 LysR substrate binding domain D3M96_13610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_13615 PF00171 Aldehyde dehydrogenase family D3M96_13620 PF03466 LysR substrate binding domain D3M96_13620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_13625 PF07715 TonB-dependent Receptor Plug Domain D3M96_13625 PF00593 TonB dependent receptor D3M96_13635 PF01032 FecCD transport family D3M96_13640 PF00005 ABC transporter D3M96_13645 PF00296 Luciferase-like monooxygenase D3M96_13650 PF00440 Bacterial regulatory proteins, tetR family D3M96_13650 PF17754 MftR C-terminal domain D3M96_13660 PF00883 Cytosol aminopeptidase family, catalytic domain D3M96_13660 PF02789 Cytosol aminopeptidase family, N-terminal domain D3M96_13670 PF01027 Inhibitor of apoptosis-promoting Bax1 D3M96_13680 PF00132 Bacterial transferase hexapeptide (six repeats) D3M96_13695 PF11967 Recombination protein O N terminal D3M96_13695 PF02565 Recombination protein O C terminal D3M96_13700 PF07650 KH domain D3M96_13700 PF01926 50S ribosome-binding GTPase D3M96_13705 PF14622 Ribonuclease-III-like D3M96_13705 PF00035 Double-stranded RNA binding motif D3M96_13710 PF10502 Signal peptidase, peptidase S26 D3M96_13715 PF00009 Elongation factor Tu GTP binding domain D3M96_13715 PF00679 Elongation factor G C-terminus D3M96_13715 PF03144 Elongation factor Tu domain 2 D3M96_13715 PF06421 GTP-binding protein LepA C-terminus D3M96_13720 PF13180 PDZ domain D3M96_13735 PF08281 Sigma-70, region 4 D3M96_13735 PF04542 Sigma-70 region 2 D3M96_13745 PF00109 Beta-ketoacyl synthase, N-terminal domain D3M96_13745 PF02801 Beta-ketoacyl synthase, C-terminal domain D3M96_13750 PF00550 Phosphopantetheine attachment site D3M96_13760 PF00698 Acyl transferase domain D3M96_13765 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D3M96_13765 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D3M96_13770 PF02504 Fatty acid synthesis protein D3M96_13775 PF01783 Ribosomal L32p protein family D3M96_13780 PF02620 Large ribosomal RNA subunit accumulation protein YceD D3M96_13785 PF02545 Maf-like protein D3M96_13790 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3M96_13795 PF01510 N-acetylmuramoyl-L-alanine amidase D3M96_13800 PF01794 Ferric reductase like transmembrane component D3M96_13805 PF00174 Oxidoreductase molybdopterin binding domain D3M96_13810 PF13419 Haloacid dehalogenase-like hydrolase D3M96_13815 PF01479 S4 domain D3M96_13815 PF00849 RNA pseudouridylate synthase D3M96_13820 PF12111 Polyribonucleotide phosphorylase C terminal D3M96_13820 PF00575 S1 RNA binding domain D3M96_13820 PF10150 Ribonuclease E/G family D3M96_13825 PF01039 Carboxyl transferase domain D3M96_13825 PF17848 Acetyl-coA carboxylase zinc finger domain D3M96_13830 PF00290 Tryptophan synthase alpha chain D3M96_13835 PF00291 Pyridoxal-phosphate dependent enzyme D3M96_13840 PF02824 TGS domain D3M96_13840 PF04607 Region found in RelA / SpoT proteins D3M96_13840 PF13291 ACT domain D3M96_13850 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain D3M96_13850 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family D3M96_13855 PF00037 4Fe-4S binding domain D3M96_13855 PF11953 Domain of unknown function (DUF3470) D3M96_13865 PF04060 Putative Fe-S cluster D3M96_13870 PF00730 HhH-GPD superfamily base excision DNA repair protein D3M96_13870 PF00633 Helix-hairpin-helix motif D3M96_13870 PF10576 Iron-sulfur binding domain of endonuclease III D3M96_13875 PF00005 ABC transporter D3M96_13880 PF03922 OmpW family D3M96_13885 PF00005 ABC transporter D3M96_13890 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3M96_13890 PF00005 ABC transporter D3M96_13905 PF01641 SelR domain D3M96_13910 PF04279 Intracellular septation protein A D3M96_13925 PF01653 NAD-dependent DNA ligase adenylation domain D3M96_13925 PF03120 NAD-dependent DNA ligase OB-fold domain D3M96_13925 PF00533 BRCA1 C Terminus (BRCT) domain D3M96_13925 PF12826 Helix-hairpin-helix motif D3M96_13925 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D3M96_13935 PF02463 RecF/RecN/SMC N terminal domain D3M96_13935 PF06470 SMC proteins Flexible Hinge Domain D3M96_13940 PF07690 Major Facilitator Superfamily D3M96_13945 PF03167 Uracil DNA glycosylase superfamily D3M96_13950 PF00814 Glycoprotease family D3M96_13955 PF00072 Response regulator receiver domain D3M96_13955 PF00486 Transcriptional regulatory protein, C terminal D3M96_13960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_13960 PF00512 His Kinase A (phospho-acceptor) domain D3M96_13960 PF00672 HAMP domain D3M96_13965 PF02542 YgbB family D3M96_13970 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D3M96_13975 PF17757 UvrB interaction domain D3M96_13975 PF03461 TRCF domain D3M96_13975 PF00270 DEAD/DEAH box helicase D3M96_13975 PF00271 Helicase conserved C-terminal domain D3M96_13975 PF02559 CarD-like/TRCF domain D3M96_13985 PF03060 Nitronate monooxygenase D3M96_13995 PF00361 Proton-conducting membrane transporter D3M96_14000 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus D3M96_14000 PF00361 Proton-conducting membrane transporter D3M96_14005 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D3M96_14005 PF00361 Proton-conducting membrane transporter D3M96_14010 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D3M96_14015 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 D3M96_14020 PF12838 4Fe-4S dicluster domain D3M96_14025 PF00146 NADH dehydrogenase D3M96_14030 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal D3M96_14030 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D3M96_14030 PF00384 Molybdopterin oxidoreductase D3M96_14035 PF10531 SLBB domain D3M96_14035 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D3M96_14035 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D3M96_14045 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D3M96_14050 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D3M96_14055 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D3M96_14060 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 D3M96_14070 PF13609 Gram-negative porin D3M96_14080 PF03840 Preprotein translocase SecG subunit D3M96_14085 PF00121 Triosephosphate isomerase D3M96_14090 PF08240 Alcohol dehydrogenase GroES-like domain D3M96_14090 PF00107 Zinc-binding dehydrogenase D3M96_14105 PF03725 3' exoribonuclease family, domain 2 D3M96_14105 PF00575 S1 RNA binding domain D3M96_14105 PF01138 3' exoribonuclease family, domain 1 D3M96_14105 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D3M96_14105 PF00013 KH domain D3M96_14110 PF00312 Ribosomal protein S15 D3M96_14115 PF01066 CDP-alcohol phosphatidyltransferase D3M96_14120 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D3M96_14120 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D3M96_14125 PF10369 Small subunit of acetolactate synthase D3M96_14130 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3M96_14130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3M96_14130 PF00205 Thiamine pyrophosphate enzyme, central domain D3M96_14135 PF12805 FUSC-like inner membrane protein yccS D3M96_14140 PF03883 Peroxide stress protein YaaA D3M96_14185 PF00589 Phage integrase family D3M96_14205 PF04865 Baseplate J-like protein D3M96_14250 PF04984 Phage tail sheath protein subtilisin-like domain D3M96_14250 PF17482 Phage tail sheath C-terminal domain D3M96_14290 PF01343 Peptidase family S49 D3M96_14300 PF03354 Phage Terminase D3M96_14400 PF00436 Single-strand binding protein family D3M96_14465 PF00589 Phage integrase family D3M96_14475 PF00144 Beta-lactamase D3M96_14490 PF02403 Seryl-tRNA synthetase N-terminal domain D3M96_14490 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D3M96_14495 PF16193 AAA C-terminal domain D3M96_14495 PF00004 ATPase family associated with various cellular activities (AAA) D3M96_14495 PF12002 MgsA AAA+ ATPase C terminal D3M96_14500 PF03548 Outer membrane lipoprotein carrier protein LolA D3M96_14505 PF17854 FtsK alpha domain D3M96_14505 PF09397 Ftsk gamma domain D3M96_14505 PF01580 FtsK/SpoIIIE family D3M96_14505 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D3M96_14510 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3M96_14530 PF07690 Major Facilitator Superfamily D3M96_14550 PF00135 Carboxylesterase family D3M96_14555 PF08028 Acyl-CoA dehydrogenase, C-terminal domain D3M96_14555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3M96_14560 PF00180 Isocitrate/isopropylmalate dehydrogenase D3M96_14575 PF00034 Cytochrome c D3M96_14580 PF01434 Peptidase family M41 D3M96_14580 PF00004 ATPase family associated with various cellular activities (AAA) D3M96_14580 PF17862 AAA+ lid domain D3M96_14605 PF05193 Peptidase M16 inactive domain D3M96_14605 PF00675 Insulinase (Peptidase family M16) D3M96_14610 PF01556 DnaJ C terminal domain D3M96_14610 PF00226 DnaJ domain D3M96_14610 PF00684 DnaJ central domain D3M96_14615 PF00012 Hsp70 protein D3M96_14620 PF01025 GrpE D3M96_14625 PF00762 Ferrochelatase D3M96_14630 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding D3M96_14630 PF01628 HrcA protein C terminal domain D3M96_14635 PF01513 ATP-NAD kinase D3M96_14640 PF02463 RecF/RecN/SMC N terminal domain D3M96_14645 PF01475 Ferric uptake regulator family D3M96_14650 PF04355 SmpA / OmlA family D3M96_14655 PF05173 Dihydrodipicolinate reductase, C-terminus D3M96_14655 PF01113 Dihydrodipicolinate reductase, N-terminus D3M96_14665 PF01565 FAD binding domain D3M96_14665 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D3M96_14685 PF00990 Diguanylate cyclase, GGDEF domain D3M96_14685 PF03707 Bacterial signalling protein N terminal repeat D3M96_14685 PF13188 PAS domain D3M96_14685 PF00563 EAL domain D3M96_14695 PF07660 Secretin and TonB N terminus short domain D3M96_14695 PF07715 TonB-dependent Receptor Plug Domain D3M96_14695 PF00593 TonB dependent receptor D3M96_14700 PF07690 Major Facilitator Superfamily D3M96_14715 PF00756 Putative esterase D3M96_14725 PF00171 Aldehyde dehydrogenase family D3M96_14730 PF01619 Proline dehydrogenase D3M96_14730 PF14850 DNA-binding domain of Proline dehydrogenase D3M96_14730 PF18327 Proline utilization A proline dehydrogenase N-terminal domain D3M96_14730 PF00171 Aldehyde dehydrogenase family D3M96_14735 PF01037 Lrp/AsnC ligand binding domain D3M96_14745 PF02423 Ornithine cyclodeaminase/mu-crystallin family D3M96_14750 PF07690 Major Facilitator Superfamily D3M96_14750 PF00083 Sugar (and other) transporter D3M96_14755 PF00271 Helicase conserved C-terminal domain D3M96_14755 PF00270 DEAD/DEAH box helicase D3M96_14755 PF03880 DbpA RNA binding domain D3M96_14760 PF05973 Phage derived protein Gp49-like (DUF891) D3M96_14765 PF01381 Helix-turn-helix D3M96_14770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_14770 PF03466 LysR substrate binding domain D3M96_14775 PF00355 Rieske [2Fe-2S] domain D3M96_14775 PF00848 Ring hydroxylating alpha subunit (catalytic domain) D3M96_14780 PF00866 Ring hydroxylating beta subunit D3M96_14785 PF00355 Rieske [2Fe-2S] domain D3M96_14790 PF00106 short chain dehydrogenase D3M96_14795 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3M96_14795 PF14759 Reductase C-terminal D3M96_14800 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase D3M96_14805 PF12697 Alpha/beta hydrolase family D3M96_14810 PF01557 Fumarylacetoacetate (FAA) hydrolase family D3M96_14815 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation D3M96_14815 PF01118 Semialdehyde dehydrogenase, NAD binding domain D3M96_14820 PF00682 HMGL-like D3M96_14820 PF07836 DmpG-like communication domain D3M96_14825 PF07690 Major Facilitator Superfamily D3M96_14830 PF00342 Phosphoglucose isomerase D3M96_14845 PF01425 Amidase D3M96_14850 PF00392 Bacterial regulatory proteins, gntR family D3M96_14850 PF00155 Aminotransferase class I and II D3M96_14855 PF07690 Major Facilitator Superfamily D3M96_14880 PF02803 Thiolase, C-terminal domain D3M96_14880 PF00108 Thiolase, N-terminal domain D3M96_14885 PF00106 short chain dehydrogenase D3M96_14900 PF00005 ABC transporter D3M96_14905 PF13533 Biotin-lipoyl like D3M96_14910 PF02321 Outer membrane efflux protein D3M96_14915 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus D3M96_14915 PF00561 alpha/beta hydrolase fold D3M96_14920 PF00440 Bacterial regulatory proteins, tetR family D3M96_14925 PF02592 Putative vitamin uptake transporter D3M96_14930 PF06508 Queuosine biosynthesis protein QueC D3M96_14935 PF00464 Serine hydroxymethyltransferase D3M96_14940 PF00266 Aminotransferase class-V D3M96_14945 PF00155 Aminotransferase class I and II D3M96_14945 PF00392 Bacterial regulatory proteins, gntR family D3M96_14950 PF00464 Serine hydroxymethyltransferase D3M96_14965 PF00117 Glutamine amidotransferase class-I D3M96_14965 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D3M96_14970 PF08543 Phosphomethylpyrimidine kinase D3M96_14975 PF02028 BCCT, betaine/carnitine/choline family transporter D3M96_14980 PF09278 MerR, DNA binding D3M96_14980 PF00376 MerR family regulatory protein D3M96_14995 PF00873 AcrB/AcrD/AcrF family D3M96_15020 PF02293 AmiS/UreI family transporter D3M96_15040 PF00115 Cytochrome C and Quinol oxidase polypeptide I D3M96_15045 PF00155 Aminotransferase class I and II D3M96_15045 PF00392 Bacterial regulatory proteins, gntR family D3M96_15055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_15055 PF03466 LysR substrate binding domain D3M96_15060 PF00202 Aminotransferase class-III D3M96_15065 PF01177 Asp/Glu/Hydantoin racemase D3M96_15100 PF04185 Phosphoesterase family D3M96_15100 PF05506 Domain of unknown function (DUF756) D3M96_15105 PF00482 Type II secretion system (T2SS), protein F D3M96_15110 PF00437 Type II/IV secretion system protein D3M96_15140 PF11612 Type II secretion system (T2SS), protein J D3M96_15140 PF07963 Prokaryotic N-terminal methylation motif D3M96_15150 PF12019 Type II transport protein GspH D3M96_15150 PF07963 Prokaryotic N-terminal methylation motif D3M96_15155 PF08334 Type II secretion system (T2SS), protein G D3M96_15155 PF07963 Prokaryotic N-terminal methylation motif D3M96_15165 PF00478 IMP dehydrogenase / GMP reductase domain D3M96_15165 PF00571 CBS domain D3M96_15170 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3M96_15180 PF10415 Fumarase C C-terminus D3M96_15180 PF00206 Lyase D3M96_15185 PF01047 MarR family D3M96_15195 PF00293 NUDIX domain D3M96_15200 PF03588 Leucyl/phenylalanyl-tRNA protein transferase D3M96_15205 PF04377 Arginine-tRNA-protein transferase, C terminus D3M96_15205 PF04376 Arginine-tRNA-protein transferase, N terminus D3M96_15210 PF01180 Dihydroorotate dehydrogenase D3M96_15220 PF09339 IclR helix-turn-helix domain D3M96_15220 PF01614 Bacterial transcriptional regulator D3M96_15240 PF00270 DEAD/DEAH box helicase D3M96_15240 PF00271 Helicase conserved C-terminal domain D3M96_15260 PF00561 alpha/beta hydrolase fold D3M96_15265 PF01435 Peptidase family M48 D3M96_15285 PF01494 FAD binding domain D3M96_15290 PF01207 Dihydrouridine synthase (Dus) D3M96_15295 PF02954 Bacterial regulatory protein, Fis family D3M96_15300 PF01808 AICARFT/IMPCHase bienzyme D3M96_15300 PF02142 MGS-like domain D3M96_15305 PF02075 Crossover junction endodeoxyribonuclease RuvC D3M96_15310 PF07499 RuvA, C-terminal domain D3M96_15310 PF01330 RuvA N terminal domain D3M96_15315 PF00291 Pyridoxal-phosphate dependent enzyme D3M96_15320 PF17864 RuvB AAA lid domain D3M96_15320 PF05491 RuvB C-terminal winged helix domain D3M96_15320 PF05496 Holliday junction DNA helicase RuvB P-loop domain D3M96_15330 PF01979 Amidohydrolase family D3M96_15340 PF03441 FAD binding domain of DNA photolyase D3M96_15340 PF00875 DNA photolyase D3M96_15360 PF03050 Transposase IS66 family D3M96_15360 PF13817 IS66 C-terminal element D3M96_15360 PF13007 Transposase C of IS166 homeodomain D3M96_15360 PF13005 zinc-finger binding domain of transposase IS66 D3M96_15370 PF00872 Transposase, Mutator family D3M96_15430 PF00581 Rhodanese-like domain D3M96_15435 PF04143 Sulphur transport D3M96_15445 PF01625 Peptide methionine sulfoxide reductase D3M96_15455 PF01790 Prolipoprotein diacylglyceryl transferase D3M96_15480 PF01970 Tripartite tricarboxylate transporter TctA family D3M96_15490 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_15495 PF00005 ABC transporter D3M96_15495 PF08402 TOBE domain D3M96_15505 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3M96_15505 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3M96_15510 PF00512 His Kinase A (phospho-acceptor) domain D3M96_15510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_15515 PF00486 Transcriptional regulatory protein, C terminal D3M96_15515 PF00072 Response regulator receiver domain D3M96_15520 PF00293 NUDIX domain D3M96_15525 PF03129 Anticodon binding domain D3M96_15525 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D3M96_15525 PF04073 Aminoacyl-tRNA editing domain D3M96_15530 PF03061 Thioesterase superfamily D3M96_15535 PF01618 MotA/TolQ/ExbB proton channel family D3M96_15540 PF02472 Biopolymer transport protein ExbD/TolR D3M96_15550 PF07676 WD40-like Beta Propeller Repeat D3M96_15550 PF04052 TolB amino-terminal domain D3M96_15555 PF00691 OmpA family D3M96_15580 PF01554 MatE D3M96_15585 PF02608 ABC transporter substrate-binding protein PnrA-like D3M96_15600 PF00005 ABC transporter D3M96_15610 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain D3M96_15610 PF01113 Dihydrodipicolinate reductase, N-terminus D3M96_15615 PF01810 LysE type translocator D3M96_15620 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain D3M96_15620 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain D3M96_15625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_15625 PF03466 LysR substrate binding domain D3M96_15635 PF07690 Major Facilitator Superfamily D3M96_15650 PF13192 Thioredoxin domain D3M96_15650 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3M96_15655 PF00578 AhpC/TSA family D3M96_15655 PF10417 C-terminal domain of 1-Cys peroxiredoxin D3M96_15660 PF00155 Aminotransferase class I and II D3M96_15665 PF00892 EamA-like transporter family D3M96_15670 PF01507 Phosphoadenosine phosphosulfate reductase family D3M96_15675 PF01507 Phosphoadenosine phosphosulfate reductase family D3M96_15680 PF00009 Elongation factor Tu GTP binding domain D3M96_15685 PF00324 Amino acid permease D3M96_15690 PF00171 Aldehyde dehydrogenase family D3M96_15695 PF01266 FAD dependent oxidoreductase D3M96_15700 PF07063 Domain of unknown function (DUF1338) D3M96_15705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_15705 PF03466 LysR substrate binding domain D3M96_15710 PF00871 Acetokinase family D3M96_15715 PF01515 Phosphate acetyl/butaryl transferase D3M96_15725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_15725 PF03466 LysR substrate binding domain D3M96_15730 PF02678 Pirin D3M96_15730 PF17954 Quercetinase C-terminal cupin domain D3M96_15735 PF00990 Diguanylate cyclase, GGDEF domain D3M96_15735 PF17158 Membrane-associated sensor, integral membrane domain D3M96_15740 PF01425 Amidase D3M96_15750 PF00166 Chaperonin 10 Kd subunit D3M96_15755 PF00118 TCP-1/cpn60 chaperonin family D3M96_15760 PF01219 Prokaryotic diacylglycerol kinase D3M96_15765 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D3M96_15775 PF02515 CoA-transferase family III D3M96_15780 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_15785 PF09339 IclR helix-turn-helix domain D3M96_15785 PF01614 Bacterial transcriptional regulator D3M96_15790 PF02464 Competence-damaged protein D3M96_15795 PF04608 Phosphatidylglycerophosphatase A D3M96_15800 PF02769 AIR synthase related protein, C-terminal domain D3M96_15800 PF00586 AIR synthase related protein, N-terminal domain D3M96_15805 PF01029 NusB family D3M96_15810 PF00885 6,7-dimethyl-8-ribityllumazine synthase D3M96_15815 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D3M96_15815 PF00925 GTP cyclohydrolase II D3M96_15830 PF00448 SRP54-type protein, GTPase domain D3M96_15830 PF02881 SRP54-type protein, helical bundle domain D3M96_15840 PF01467 Cytidylyltransferase-like D3M96_15845 PF00037 4Fe-4S binding domain D3M96_15860 PF01053 Cys/Met metabolism PLP-dependent enzyme D3M96_15870 PF02423 Ornithine cyclodeaminase/mu-crystallin family D3M96_15875 PF07317 Flagellar regulator YcgR D3M96_15875 PF07238 PilZ domain D3M96_15890 PF00857 Isochorismatase family D3M96_15900 PF00561 alpha/beta hydrolase fold D3M96_15905 PF00034 Cytochrome c D3M96_15905 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3M96_15905 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D3M96_15910 PF00111 2Fe-2S iron-sulfur cluster binding domain D3M96_15910 PF01799 [2Fe-2S] binding domain D3M96_15915 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3M96_15915 PF00034 Cytochrome c D3M96_15915 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D3M96_15925 PF00005 ABC transporter D3M96_15930 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3M96_15930 PF00005 ABC transporter D3M96_15940 PF13458 Periplasmic binding protein D3M96_15945 PF01804 Penicillin amidase D3M96_15950 PF00990 Diguanylate cyclase, GGDEF domain D3M96_15955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_15955 PF03466 LysR substrate binding domain D3M96_15960 PF00884 Sulfatase D3M96_15960 PF16347 Domain of unknown function (DUF4976) D3M96_15965 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_15970 PF00872 Transposase, Mutator family D3M96_15980 PF12706 Beta-lactamase superfamily domain D3M96_15980 PF00753 Metallo-beta-lactamase superfamily D3M96_15995 PF13091 PLD-like domain D3M96_16010 PF13478 XdhC Rossmann domain D3M96_16010 PF02625 XdhC and CoxI family D3M96_16015 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_16025 PF00111 2Fe-2S iron-sulfur cluster binding domain D3M96_16025 PF01799 [2Fe-2S] binding domain D3M96_16030 PF00941 FAD binding domain in molybdopterin dehydrogenase D3M96_16030 PF03450 CO dehydrogenase flavoprotein C-terminal domain D3M96_16035 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D3M96_16035 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D3M96_16040 PF03480 Bacterial extracellular solute-binding protein, family 7 D3M96_16045 PF00355 Rieske [2Fe-2S] domain D3M96_16050 PF14759 Reductase C-terminal D3M96_16050 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3M96_16055 PF00355 Rieske [2Fe-2S] domain D3M96_16055 PF00848 Ring hydroxylating alpha subunit (catalytic domain) D3M96_16070 PF00857 Isochorismatase family D3M96_16080 PF00561 alpha/beta hydrolase fold D3M96_16090 PF01047 MarR family D3M96_16095 PF00005 ABC transporter D3M96_16115 PF02667 Short chain fatty acid transporter D3M96_16130 PF00929 Exonuclease D3M96_16135 PF00873 AcrB/AcrD/AcrF family D3M96_16140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3M96_16140 PF00529 HlyD membrane-fusion protein of T1SS D3M96_16145 PF00075 RNase H D3M96_16150 PF08241 Methyltransferase domain D3M96_16155 PF00753 Metallo-beta-lactamase superfamily D3M96_16155 PF16123 Hydroxyacylglutathione hydrolase C-terminus D3M96_16160 PF01476 LysM domain D3M96_16160 PF01464 Transglycosylase SLT domain D3M96_16170 PF00158 Sigma-54 interaction domain D3M96_16170 PF00072 Response regulator receiver domain D3M96_16170 PF02954 Bacterial regulatory protein, Fis family D3M96_16175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_16175 PF02743 Cache domain D3M96_16175 PF00512 His Kinase A (phospho-acceptor) domain D3M96_16180 PF00375 Sodium:dicarboxylate symporter family D3M96_16210 PF04073 Aminoacyl-tRNA editing domain D3M96_16215 PF05995 Cysteine dioxygenase type I D3M96_16220 PF00378 Enoyl-CoA hydratase/isomerase D3M96_16225 PF13380 CoA binding domain D3M96_16225 PF00583 Acetyltransferase (GNAT) family D3M96_16225 PF13607 Succinyl-CoA ligase like flavodoxin domain D3M96_16230 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_16235 PF08240 Alcohol dehydrogenase GroES-like domain D3M96_16235 PF00107 Zinc-binding dehydrogenase D3M96_16240 PF02515 CoA-transferase family III D3M96_16245 PF00378 Enoyl-CoA hydratase/isomerase D3M96_16265 PF14864 Alkyl sulfatase C-terminal D3M96_16265 PF00753 Metallo-beta-lactamase superfamily D3M96_16265 PF14863 Alkyl sulfatase dimerisation D3M96_16280 PF13193 AMP-binding enzyme C-terminal domain D3M96_16280 PF00501 AMP-binding enzyme D3M96_16300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_16300 PF03466 LysR substrate binding domain D3M96_16310 PF02040 Arsenical pump membrane protein D3M96_16315 PF03960 ArsC family D3M96_16320 PF03358 NADPH-dependent FMN reductase D3M96_16325 PF00486 Transcriptional regulatory protein, C terminal D3M96_16325 PF00072 Response regulator receiver domain D3M96_16330 PF08521 Two-component sensor kinase N-terminal D3M96_16330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_16330 PF00512 His Kinase A (phospho-acceptor) domain D3M96_16375 PF03135 CagE, TrbE, VirB family, component of type IV transporter system D3M96_16405 PF04335 VirB8 protein D3M96_16415 PF03743 Bacterial conjugation TrbI-like protein D3M96_16420 PF00437 Type II/IV secretion system protein D3M96_16450 PF05872 Bacterial protein of unknown function (DUF853) D3M96_16455 PF18272 single-stranded DNA binding TraI N-terminal subdomain D3M96_16455 PF07057 DNA helicase TraI D3M96_16455 PF18340 DNA relaxase TraI 2B/2B-like domain D3M96_16455 PF08751 TrwC relaxase D3M96_16465 PF01381 Helix-turn-helix D3M96_16470 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB D3M96_16480 PF05721 Phytanoyl-CoA dioxygenase (PhyH) D3M96_16490 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_16495 PF00005 ABC transporter D3M96_16500 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3M96_16500 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3M96_16505 PF03466 LysR substrate binding domain D3M96_16505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_16515 PF00589 Phage integrase family D3M96_16515 PF02899 Phage integrase, N-terminal SAM-like domain D3M96_16520 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) D3M96_16525 PF00436 Single-strand binding protein family D3M96_16560 PF13438 Domain of unknown function (DUF4113) D3M96_16560 PF00817 impB/mucB/samB family D3M96_16560 PF11798 IMS family HHH motif D3M96_16560 PF11799 impB/mucB/samB family C-terminal domain D3M96_16565 PF00717 Peptidase S24-like D3M96_16585 PF00589 Phage integrase family D3M96_16595 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D3M96_16595 PF01872 RibD C-terminal domain D3M96_16600 PF03477 ATP cone domain D3M96_16605 PF00464 Serine hydroxymethyltransferase D3M96_16610 PF01161 Phosphatidylethanolamine-binding protein D3M96_16615 PF01479 S4 domain D3M96_16615 PF00579 tRNA synthetases class I (W and Y) D3M96_16620 PF01551 Peptidase family M23 D3M96_16620 PF04225 Opacity-associated protein A LysM-like domain D3M96_16625 PF03702 Anhydro-N-acetylmuramic acid kinase D3M96_16630 PF01521 Iron-sulphur cluster biosynthesis D3M96_16640 PF02774 Semialdehyde dehydrogenase, dimerisation domain D3M96_16640 PF01118 Semialdehyde dehydrogenase, NAD binding domain D3M96_16645 PF00380 Ribosomal protein S9/S16 D3M96_16650 PF00572 Ribosomal protein L13 D3M96_16655 PF03480 Bacterial extracellular solute-binding protein, family 7 D3M96_16660 PF01523 Putative modulator of DNA gyrase D3M96_16665 PF04751 Protein of unknown function (DUF615) D3M96_16680 PF13380 CoA binding domain D3M96_16680 PF13607 Succinyl-CoA ligase like flavodoxin domain D3M96_16680 PF00583 Acetyltransferase (GNAT) family D3M96_16690 PF00690 Cation transporter/ATPase, N-terminus D3M96_16690 PF00689 Cation transporting ATPase, C-terminus D3M96_16695 PF00512 His Kinase A (phospho-acceptor) domain D3M96_16695 PF08448 PAS fold D3M96_16695 PF13426 PAS domain D3M96_16695 PF00072 Response regulator receiver domain D3M96_16695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_16715 PF00749 tRNA synthetases class I (E and Q), catalytic domain D3M96_16720 PF07152 YaeQ protein D3M96_16730 PF01037 Lrp/AsnC ligand binding domain D3M96_16745 PF02325 YGGT family D3M96_16750 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D3M96_16750 PF12833 Helix-turn-helix domain D3M96_16750 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D3M96_16750 PF02805 Metal binding domain of Ada D3M96_16755 PF05433 Glycine zipper 2TM domain D3M96_16760 PF00294 pfkB family carbohydrate kinase D3M96_16775 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3M96_16775 PF00289 Biotin carboxylase, N-terminal domain D3M96_16775 PF02785 Biotin carboxylase C-terminal domain D3M96_16780 PF00364 Biotin-requiring enzyme D3M96_16785 PF01220 Dehydroquinase class II D3M96_16790 PF00578 AhpC/TSA family D3M96_16795 PF01225 Mur ligase family, catalytic domain D3M96_16795 PF08245 Mur ligase middle domain D3M96_16795 PF02875 Mur ligase family, glutamate ligase domain D3M96_16800 PF05728 Uncharacterised protein family (UPF0227) D3M96_16815 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D3M96_16815 PF01488 Shikimate / quinate 5-dehydrogenase D3M96_16815 PF08501 Shikimate dehydrogenase substrate binding domain D3M96_16820 PF00912 Transglycosylase D3M96_16830 PF00149 Calcineurin-like phosphoesterase D3M96_16835 PF01553 Acyltransferase D3M96_16840 PF03652 Holliday junction resolvase D3M96_16845 PF02622 Uncharacterized ACR, COG1678 D3M96_16850 PF00301 Rubredoxin D3M96_16860 PF02581 Thiamine monophosphate synthase D3M96_16865 PF00202 Aminotransferase class-III D3M96_16870 PF00501 AMP-binding enzyme D3M96_16870 PF13193 AMP-binding enzyme C-terminal domain D3M96_16880 PF01960 ArgJ family D3M96_16890 PF05532 CsbD-like D3M96_16895 PF00829 Ribosomal prokaryotic L21 protein D3M96_16900 PF01016 Ribosomal L27 protein D3M96_16905 PF01018 GTP1/OBG D3M96_16905 PF01926 50S ribosome-binding GTPase D3M96_16910 PF00696 Amino acid kinase family D3M96_16910 PF01472 PUA domain D3M96_16915 PF01266 FAD dependent oxidoreductase D3M96_16935 PF01964 Radical SAM ThiC family D3M96_16935 PF13667 ThiC-associated domain D3M96_16940 PF00872 Transposase, Mutator family D3M96_16950 PF04972 BON domain D3M96_16950 PF00691 OmpA family D3M96_16955 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_16960 PF00005 ABC transporter D3M96_16965 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_16970 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_16975 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3M96_16980 PF00005 ABC transporter D3M96_16985 PF18075 FtsX extracellular domain D3M96_16990 PF00633 Helix-hairpin-helix motif D3M96_16990 PF00730 HhH-GPD superfamily base excision DNA repair protein D3M96_16990 PF14815 NUDIX domain D3M96_16995 PF01098 Cell cycle protein D3M96_17000 PF03717 Penicillin-binding Protein dimerisation domain D3M96_17000 PF00905 Penicillin binding protein transpeptidase domain D3M96_17010 PF04085 rod shape-determining protein MreC D3M96_17020 PF02686 Glu-tRNAGln amidotransferase C subunit D3M96_17025 PF01425 Amidase D3M96_17030 PF02934 GatB/GatE catalytic domain D3M96_17030 PF02637 GatB domain D3M96_17035 PF00156 Phosphoribosyl transferase domain D3M96_17040 PF03466 LysR substrate binding domain D3M96_17040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_17045 PF07681 DoxX D3M96_17050 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase D3M96_17060 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3M96_17065 PF07732 Multicopper oxidase D3M96_17065 PF00394 Multicopper oxidase D3M96_17070 PF01047 MarR family D3M96_17075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3M96_17075 PF02770 Acyl-CoA dehydrogenase, middle domain D3M96_17075 PF12806 Acetyl-CoA dehydrogenase C-terminal like D3M96_17075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3M96_17080 PF07690 Major Facilitator Superfamily D3M96_17085 PF00583 Acetyltransferase (GNAT) family D3M96_17085 PF13380 CoA binding domain D3M96_17085 PF13607 Succinyl-CoA ligase like flavodoxin domain D3M96_17090 PF00378 Enoyl-CoA hydratase/isomerase D3M96_17095 PF00115 Cytochrome C and Quinol oxidase polypeptide I D3M96_17100 PF00158 Sigma-54 interaction domain D3M96_17100 PF02954 Bacterial regulatory protein, Fis family D3M96_17120 PF00440 Bacterial regulatory proteins, tetR family D3M96_17125 PF01593 Flavin containing amine oxidoreductase D3M96_17155 PF00106 short chain dehydrogenase D3M96_17160 PF01370 NAD dependent epimerase/dehydratase family D3M96_17160 PF08338 Domain of unknown function (DUF1731) D3M96_17165 PF03616 Sodium/glutamate symporter D3M96_17170 PF00348 Polyprenyl synthetase D3M96_17180 PF00293 NUDIX domain D3M96_17185 PF17284 Spermidine synthase tetramerisation domain D3M96_17190 PF02321 Outer membrane efflux protein D3M96_17195 PF00873 AcrB/AcrD/AcrF family D3M96_17200 PF00873 AcrB/AcrD/AcrF family D3M96_17205 PF13533 Biotin-lipoyl like D3M96_17210 PF07072 Cell division protein D3M96_17215 PF01121 Dephospho-CoA kinase D3M96_17225 PF00196 Bacterial regulatory proteins, luxR family D3M96_17225 PF00072 Response regulator receiver domain D3M96_17230 PF02569 Pantoate-beta-alanine ligase D3M96_17235 PF02616 Segregation and condensation protein ScpA D3M96_17245 PF07690 Major Facilitator Superfamily D3M96_17270 PF02574 Homocysteine S-methyltransferase D3M96_17270 PF00809 Pterin binding enzyme D3M96_17270 PF02965 Vitamin B12 dependent methionine synthase, activation domain D3M96_17270 PF02310 B12 binding domain D3M96_17270 PF02607 B12 binding domain D3M96_17275 PF00593 TonB dependent receptor D3M96_17275 PF07715 TonB-dependent Receptor Plug Domain D3M96_17280 PF01497 Periplasmic binding protein D3M96_17285 PF00593 TonB dependent receptor D3M96_17285 PF07715 TonB-dependent Receptor Plug Domain D3M96_17285 PF07660 Secretin and TonB N terminus short domain D3M96_17295 PF08281 Sigma-70, region 4 D3M96_17295 PF04542 Sigma-70 region 2 D3M96_17310 PF05690 Thiazole biosynthesis protein ThiG D3M96_17315 PF08543 Phosphomethylpyrimidine kinase D3M96_17320 PF01048 Phosphorylase superfamily D3M96_17330 PF02321 Outer membrane efflux protein D3M96_17335 PF01467 Cytidylyltransferase-like D3M96_17345 PF03109 ABC1 family D3M96_17360 PF01209 ubiE/COQ5 methyltransferase family D3M96_17365 PF00486 Transcriptional regulatory protein, C terminal D3M96_17365 PF00072 Response regulator receiver domain D3M96_17370 PF00512 His Kinase A (phospho-acceptor) domain D3M96_17370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_17370 PF00989 PAS fold D3M96_17370 PF11808 Phosphate regulon sensor protein PhoR D3M96_17380 PF02682 Carboxyltransferase domain, subdomain C and D D3M96_17385 PF02626 Carboxyltransferase domain, subdomain A and B D3M96_17390 PF00291 Pyridoxal-phosphate dependent enzyme D3M96_17390 PF00585 C-terminal regulatory domain of Threonine dehydratase D3M96_17395 PF09335 SNARE associated Golgi protein D3M96_17410 PF03797 Autotransporter beta-domain D3M96_17410 PF00082 Subtilase family D3M96_17415 PF00082 Subtilase family D3M96_17415 PF03797 Autotransporter beta-domain D3M96_17420 PF00156 Phosphoribosyl transferase domain D3M96_17425 PF00005 ABC transporter D3M96_17425 PF00664 ABC transporter transmembrane region D3M96_17430 PF00005 ABC transporter D3M96_17430 PF00664 ABC transporter transmembrane region D3M96_17435 PF08173 Membrane bound YbgT-like protein D3M96_17440 PF02322 Cytochrome bd terminal oxidase subunit II D3M96_17445 PF01654 Cytochrome bd terminal oxidase subunit I D3M96_17455 PF01380 SIS domain D3M96_17455 PF00571 CBS domain D3M96_17475 PF00005 ABC transporter D3M96_17480 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D3M96_17485 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D3M96_17490 PF07475 HPr Serine kinase C-terminal domain D3M96_17490 PF02603 HPr Serine kinase N terminus D3M96_17495 PF03668 P-loop ATPase protein family D3M96_17500 PF03330 Lytic transglycolase D3M96_17500 PF05036 Sporulation related domain D3M96_17505 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3M96_17510 PF02021 Uncharacterised protein family UPF0102 D3M96_17515 PF13580 SIS domain D3M96_17525 PF00578 AhpC/TSA family D3M96_17530 PF00696 Amino acid kinase family D3M96_17540 PF00899 ThiF family D3M96_17545 PF13180 PDZ domain D3M96_17545 PF03572 Peptidase family S41 D3M96_17550 PF01551 Peptidase family M23 D3M96_17555 PF00300 Histidine phosphatase superfamily (branch 1) D3M96_17560 PF00581 Rhodanese-like domain D3M96_17565 PF00462 Glutaredoxin D3M96_17570 PF02556 Preprotein translocase subunit SecB D3M96_17575 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D3M96_17575 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D3M96_17580 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_17585 PF00588 SpoU rRNA Methylase family D3M96_17590 PF00156 Phosphoribosyl transferase domain D3M96_17595 PF08241 Methyltransferase domain D3M96_17600 PF00885 6,7-dimethyl-8-ribityllumazine synthase D3M96_17605 PF02954 Bacterial regulatory protein, Fis family D3M96_17605 PF00072 Response regulator receiver domain D3M96_17605 PF00158 Sigma-54 interaction domain D3M96_17610 PF00672 HAMP domain D3M96_17610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_17620 PF01189 16S rRNA methyltransferase RsmB/F D3M96_17620 PF01029 NusB family D3M96_17625 PF04055 Radical SAM superfamily D3M96_17625 PF18693 TRAM domain D3M96_17625 PF00919 Uncharacterized protein family UPF0004 D3M96_17630 PF00132 Bacterial transferase hexapeptide (six repeats) D3M96_17635 PF16363 GDP-mannose 4,6 dehydratase D3M96_17640 PF17645 Arylmalonate decarboxylase D3M96_17645 PF03466 LysR substrate binding domain D3M96_17645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_17650 PF00171 Aldehyde dehydrogenase family D3M96_17655 PF03328 HpcH/HpaI aldolase/citrate lyase family D3M96_17660 PF01557 Fumarylacetoacetate (FAA) hydrolase family D3M96_17665 PF01047 MarR family D3M96_17670 PF00005 ABC transporter D3M96_17675 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_17700 PF08485 Polysaccharide biosynthesis protein C-terminal D3M96_17700 PF02719 Polysaccharide biosynthesis protein D3M96_17705 PF01370 NAD dependent epimerase/dehydratase family D3M96_17710 PF02350 UDP-N-acetylglucosamine 2-epimerase D3M96_17725 PF00953 Glycosyl transferase family 4 D3M96_17735 PF02719 Polysaccharide biosynthesis protein D3M96_17740 PF04932 O-Antigen ligase D3M96_17745 PF16363 GDP-mannose 4,6 dehydratase D3M96_17750 PF00483 Nucleotidyl transferase D3M96_17755 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase D3M96_17760 PF04321 RmlD substrate binding domain D3M96_17765 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D3M96_17770 PF02874 ATP synthase alpha/beta family, beta-barrel domain D3M96_17770 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3M96_17775 PF00231 ATP synthase D3M96_17780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3M96_17780 PF02874 ATP synthase alpha/beta family, beta-barrel domain D3M96_17780 PF00306 ATP synthase alpha/beta chain, C terminal domain D3M96_17785 PF00213 ATP synthase delta (OSCP) subunit D3M96_17790 PF00430 ATP synthase B/B' CF(0) D3M96_17795 PF00137 ATP synthase subunit C D3M96_17800 PF00119 ATP synthase A chain D3M96_17810 PF00378 Enoyl-CoA hydratase/isomerase D3M96_17825 PF01171 PP-loop family D3M96_17830 PF02441 Flavoprotein D3M96_17835 PF00462 Glutaredoxin D3M96_17840 PF05175 Methyltransferase small domain D3M96_17840 PF17827 PrmC N-terminal domain D3M96_17845 PF03462 PCRF domain D3M96_17845 PF00472 RF-1 domain D3M96_17850 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D3M96_17850 PF01488 Shikimate / quinate 5-dehydrogenase D3M96_17850 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D3M96_17860 PF00589 Phage integrase family D3M96_17860 PF13356 Arm DNA-binding domain D3M96_17890 PF00589 Phage integrase family D3M96_17890 PF13356 Arm DNA-binding domain D3M96_17895 PF13175 AAA ATPase domain D3M96_17900 PF00570 HRDC domain D3M96_17900 PF13361 UvrD-like helicase C-terminal domain D3M96_17935 PF00990 Diguanylate cyclase, GGDEF domain D3M96_17940 PF00398 Ribosomal RNA adenine dimethylase D3M96_17950 PF00080 Copper/zinc superoxide dismutase (SODC) D3M96_17960 PF05145 Transition state regulatory protein AbrB D3M96_17965 PF01970 Tripartite tricarboxylate transporter TctA family D3M96_17980 PF00672 HAMP domain D3M96_17980 PF00512 His Kinase A (phospho-acceptor) domain D3M96_17980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_17985 PF00486 Transcriptional regulatory protein, C terminal D3M96_17985 PF00072 Response regulator receiver domain D3M96_17990 PF03466 LysR substrate binding domain D3M96_17990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_17995 PF08946 Osmosensory transporter coiled coil D3M96_17995 PF00083 Sugar (and other) transporter D3M96_18000 PF00795 Carbon-nitrogen hydrolase D3M96_18020 PF00005 ABC transporter D3M96_18045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3M96_18045 PF01568 Molydopterin dinucleotide binding domain D3M96_18045 PF00384 Molybdopterin oxidoreductase D3M96_18050 PF01568 Molydopterin dinucleotide binding domain D3M96_18050 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3M96_18050 PF00384 Molybdopterin oxidoreductase D3M96_18055 PF09163 Formate dehydrogenase N, transmembrane D3M96_18055 PF13247 4Fe-4S dicluster domain D3M96_18060 PF01292 Prokaryotic cytochrome b561 D3M96_18065 PF04216 Protein involved in formate dehydrogenase formation D3M96_18070 PF03841 L-seryl-tRNA selenium transferase D3M96_18070 PF12390 Selenocysteine synthase N terminal D3M96_18075 PF00009 Elongation factor Tu GTP binding domain D3M96_18075 PF09106 Elongation factor SelB, winged helix D3M96_18075 PF09107 Elongation factor SelB, winged helix D3M96_18075 PF03144 Elongation factor Tu domain 2 D3M96_18085 PF01381 Helix-turn-helix D3M96_18090 PF00596 Class II Aldolase and Adducin N-terminal domain D3M96_18100 PF03401 Tripartite tricarboxylate transporter family receptor D3M96_18105 PF00593 TonB dependent receptor D3M96_18105 PF07715 TonB-dependent Receptor Plug Domain D3M96_18115 PF02769 AIR synthase related protein, C-terminal domain D3M96_18115 PF00586 AIR synthase related protein, N-terminal domain D3M96_18125 PF12801 4Fe-4S binding domain D3M96_18125 PF04205 FMN-binding domain D3M96_18130 PF18793 Nitrous oxide reductase propeller repeat 2 D3M96_18130 PF18764 Nitrous oxide reductase propeller repeat D3M96_18130 PF13473 Cupredoxin-like domain D3M96_18135 PF05048 Periplasmic copper-binding protein (NosD) D3M96_18140 PF00005 ABC transporter D3M96_18145 PF12679 ABC-2 family transporter protein D3M96_18160 PF00342 Phosphoglucose isomerase D3M96_18180 PF02350 UDP-N-acetylglucosamine 2-epimerase D3M96_18190 PF00860 Permease family D3M96_18195 PF00892 EamA-like transporter family D3M96_18200 PF00155 Aminotransferase class I and II D3M96_18200 PF00392 Bacterial regulatory proteins, gntR family D3M96_18205 PF00892 EamA-like transporter family D3M96_18230 PF00691 OmpA family D3M96_18230 PF13488 Glycine zipper D3M96_18315 PF04717 Type VI secretion system, phage-baseplate injector D3M96_18315 PF16671 Actin cross-linking domain D3M96_18325 PF00108 Thiolase, N-terminal domain D3M96_18325 PF02803 Thiolase, C-terminal domain D3M96_18330 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D3M96_18330 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D3M96_18330 PF00378 Enoyl-CoA hydratase/isomerase D3M96_18345 PF00005 ABC transporter D3M96_18350 PF02405 Permease MlaE D3M96_18355 PF02470 MlaD protein D3M96_18370 PF00005 ABC transporter D3M96_18375 PF01061 ABC-2 type transporter D3M96_18385 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D3M96_18390 PF01634 ATP phosphoribosyltransferase D3M96_18395 PF00815 Histidinol dehydrogenase D3M96_18400 PF00475 Imidazoleglycerol-phosphate dehydratase D3M96_18405 PF00117 Glutamine amidotransferase class-I D3M96_18410 PF00977 Histidine biosynthesis protein D3M96_18415 PF00977 Histidine biosynthesis protein D3M96_18420 PF01502 Phosphoribosyl-AMP cyclohydrolase D3M96_18425 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase D3M96_18430 PF01230 HIT domain D3M96_18435 PF02416 mttA/Hcf106 family D3M96_18440 PF02416 mttA/Hcf106 family D3M96_18445 PF00902 Sec-independent protein translocase protein (TatC) D3M96_18450 PF13180 PDZ domain D3M96_18455 PF01784 NIF3 (NGG1p interacting factor 3) D3M96_18460 PF01741 Large-conductance mechanosensitive channel, MscL D3M96_18465 PF00355 Rieske [2Fe-2S] domain D3M96_18465 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal D3M96_18470 PF00033 Cytochrome b/b6/petB D3M96_18470 PF00032 Cytochrome b(C-terminal)/b6/petD D3M96_18475 PF02167 Cytochrome C1 family D3M96_18480 PF00043 Glutathione S-transferase, C-terminal domain D3M96_18480 PF02798 Glutathione S-transferase, N-terminal domain D3M96_18485 PF04386 Stringent starvation protein B D3M96_18490 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_18495 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_18515 PF01070 FMN-dependent dehydrogenase D3M96_18520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3M96_18520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3M96_18530 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3M96_18540 PF03480 Bacterial extracellular solute-binding protein, family 7 D3M96_18545 PF01370 NAD dependent epimerase/dehydratase family D3M96_18550 PF01261 Xylose isomerase-like TIM barrel D3M96_18555 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3M96_18555 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3M96_18560 PF00920 Dehydratase family D3M96_18565 PF07729 FCD domain D3M96_18565 PF00392 Bacterial regulatory proteins, gntR family D3M96_18570 PF01037 Lrp/AsnC ligand binding domain D3M96_18575 PF03301 Tryptophan 2,3-dioxygenase D3M96_18590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_18590 PF03466 LysR substrate binding domain D3M96_18595 PF02548 Ketopantoate hydroxymethyltransferase D3M96_18600 PF00248 Aldo/keto reductase family D3M96_18605 PF07690 Major Facilitator Superfamily D3M96_18610 PF00330 Aconitase family (aconitate hydratase) D3M96_18610 PF00694 Aconitase C-terminal domain D3M96_18615 PF00990 Diguanylate cyclase, GGDEF domain D3M96_18615 PF08448 PAS fold D3M96_18620 PF13847 Methyltransferase domain D3M96_18630 PF00795 Carbon-nitrogen hydrolase D3M96_18645 PF07969 Amidohydrolase family D3M96_18650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_18650 PF03466 LysR substrate binding domain D3M96_18660 PF00857 Isochorismatase family D3M96_18665 PF02678 Pirin D3M96_18665 PF05726 Pirin C-terminal cupin domain D3M96_18670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_18670 PF03466 LysR substrate binding domain D3M96_18675 PF05532 CsbD-like D3M96_18680 PF04972 BON domain D3M96_18685 PF00743 Flavin-binding monooxygenase-like D3M96_18690 PF00158 Sigma-54 interaction domain D3M96_18690 PF02954 Bacterial regulatory protein, Fis family D3M96_18690 PF01590 GAF domain D3M96_18695 PF13419 Haloacid dehalogenase-like hydrolase D3M96_18700 PF03466 LysR substrate binding domain D3M96_18700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_18710 PF00465 Iron-containing alcohol dehydrogenase D3M96_18715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3M96_18715 PF00005 ABC transporter D3M96_18720 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_18725 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_18725 PF12911 N-terminal TM domain of oligopeptide transport permease C D3M96_18740 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase D3M96_18745 PF03466 LysR substrate binding domain D3M96_18745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_18760 PF07715 TonB-dependent Receptor Plug Domain D3M96_18760 PF00593 TonB dependent receptor D3M96_18765 PF16220 Domain of unknown function (DUF4880) D3M96_18765 PF04773 FecR protein D3M96_18770 PF08281 Sigma-70, region 4 D3M96_18770 PF04542 Sigma-70 region 2 D3M96_18780 PF01380 SIS domain D3M96_18785 PF13404 AsnC-type helix-turn-helix domain D3M96_18785 PF01037 Lrp/AsnC ligand binding domain D3M96_18795 PF00132 Bacterial transferase hexapeptide (six repeats) D3M96_18795 PF14602 Hexapeptide repeat of succinyl-transferase D3M96_18795 PF12804 MobA-like NTP transferase domain D3M96_18810 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D3M96_18810 PF02790 Cytochrome C oxidase subunit II, transmembrane domain D3M96_18815 PF00115 Cytochrome C and Quinol oxidase polypeptide I D3M96_18825 PF00510 Cytochrome c oxidase subunit III D3M96_18845 PF02628 Cytochrome oxidase assembly protein D3M96_18850 PF01040 UbiA prenyltransferase family D3M96_18855 PF12833 Helix-turn-helix domain D3M96_18855 PF00072 Response regulator receiver domain D3M96_18875 PF00593 TonB dependent receptor D3M96_18875 PF07715 TonB-dependent Receptor Plug Domain D3M96_18880 PF04542 Sigma-70 region 2 D3M96_18880 PF00140 Sigma-70 factor, region 1.2 D3M96_18880 PF04545 Sigma-70, region 4 D3M96_18885 PF00756 Putative esterase D3M96_18890 PF00107 Zinc-binding dehydrogenase D3M96_18890 PF08240 Alcohol dehydrogenase GroES-like domain D3M96_18895 PF13091 PLD-like domain D3M96_18900 PF03372 Endonuclease/Exonuclease/phosphatase family D3M96_18905 PF01336 OB-fold nucleic acid binding domain D3M96_18905 PF00152 tRNA synthetases class II (D, K and N) D3M96_18905 PF02938 GAD domain D3M96_18925 PF01040 UbiA prenyltransferase family D3M96_18930 PF00155 Aminotransferase class I and II D3M96_18940 PF01979 Amidohydrolase family D3M96_18950 PF01381 Helix-turn-helix D3M96_18950 PF00145 C-5 cytosine-specific DNA methylase D3M96_18960 PF00221 Aromatic amino acid lyase D3M96_18965 PF17392 Urocanase C-terminal domain D3M96_18965 PF17391 Urocanase N-terminal domain D3M96_18965 PF01175 Urocanase Rossmann-like domain D3M96_18970 PF07702 UTRA domain D3M96_18970 PF00392 Bacterial regulatory proteins, gntR family D3M96_18990 PF13411 MerR HTH family regulatory protein D3M96_18995 PF07690 Major Facilitator Superfamily D3M96_19010 PF00043 Glutathione S-transferase, C-terminal domain D3M96_19010 PF02798 Glutathione S-transferase, N-terminal domain D3M96_19015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_19015 PF03466 LysR substrate binding domain D3M96_19020 PF00970 Oxidoreductase FAD-binding domain D3M96_19020 PF00175 Oxidoreductase NAD-binding domain D3M96_19020 PF00042 Globin D3M96_19025 PF00355 Rieske [2Fe-2S] domain D3M96_19030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3M96_19030 PF03466 LysR substrate binding domain D3M96_19035 PF00155 Aminotransferase class I and II D3M96_19040 PF13350 Tyrosine phosphatase family D3M96_19045 PF10996 Beta-Casp domain D3M96_19045 PF00753 Metallo-beta-lactamase superfamily D3M96_19045 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain D3M96_19065 PF02423 Ornithine cyclodeaminase/mu-crystallin family D3M96_19070 PF00970 Oxidoreductase FAD-binding domain D3M96_19070 PF00111 2Fe-2S iron-sulfur cluster binding domain D3M96_19070 PF00175 Oxidoreductase NAD-binding domain D3M96_19090 PF00970 Oxidoreductase FAD-binding domain D3M96_19090 PF00175 Oxidoreductase NAD-binding domain D3M96_19090 PF00111 2Fe-2S iron-sulfur cluster binding domain D3M96_19095 PF03928 Haem-degrading D3M96_19100 PF00171 Aldehyde dehydrogenase family D3M96_19125 PF00392 Bacterial regulatory proteins, gntR family D3M96_19125 PF07729 FCD domain D3M96_19130 PF17754 MftR C-terminal domain D3M96_19130 PF00440 Bacterial regulatory proteins, tetR family D3M96_19135 PF07690 Major Facilitator Superfamily D3M96_19140 PF00210 Ferritin-like domain D3M96_19150 PF07690 Major Facilitator Superfamily D3M96_19155 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) D3M96_19160 PF00436 Single-strand binding protein family D3M96_19165 PF07690 Major Facilitator Superfamily D3M96_19170 PF17760 UvrA interaction domain D3M96_19170 PF17755 UvrA DNA-binding domain D3M96_19175 PF13286 Phosphohydrolase-associated domain D3M96_19175 PF01966 HD domain D3M96_19180 PF01761 3-dehydroquinate synthase D3M96_19185 PF01202 Shikimate kinase D3M96_19190 PF00905 Penicillin binding protein transpeptidase domain D3M96_19190 PF00912 Transglycosylase D3M96_19190 PF17092 Penicillin-binding protein OB-like domain D3M96_19200 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D3M96_19200 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D3M96_19205 PF08448 PAS fold D3M96_19205 PF00990 Diguanylate cyclase, GGDEF domain D3M96_19205 PF00563 EAL domain D3M96_19215 PF05140 ResB-like family D3M96_19220 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3M96_19225 PF01926 50S ribosome-binding GTPase D3M96_19230 PF00490 Delta-aminolevulinic acid dehydratase D3M96_19235 PF11412 Disulphide bond corrector protein DsbC D3M96_19235 PF02683 Cytochrome C biogenesis protein transmembrane region D3M96_19240 PF03091 CutA1 divalent ion tolerance protein D3M96_19245 PF14525 AraC-binding-like domain D3M96_19245 PF12833 Helix-turn-helix domain D3M96_19255 PF00296 Luciferase-like monooxygenase D3M96_19260 PF01196 Ribosomal protein L17 D3M96_19265 PF01000 RNA polymerase Rpb3/RpoA insert domain D3M96_19265 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D3M96_19265 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D3M96_19270 PF00163 Ribosomal protein S4/S9 N-terminal domain D3M96_19270 PF01479 S4 domain D3M96_19275 PF00411 Ribosomal protein S11 D3M96_19280 PF00416 Ribosomal protein S13/S18 D3M96_19285 PF00444 Ribosomal protein L36 D3M96_19290 PF01176 Translation initiation factor 1A / IF-1 D3M96_19295 PF00344 SecY translocase D3M96_19300 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A D3M96_19305 PF00327 Ribosomal protein L30p/L7e D3M96_19310 PF03719 Ribosomal protein S5, C-terminal domain D3M96_19310 PF00333 Ribosomal protein S5, N-terminal domain D3M96_19315 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D3M96_19320 PF00347 Ribosomal protein L6 D3M96_19325 PF00410 Ribosomal protein S8 D3M96_19330 PF00253 Ribosomal protein S14p/S29e D3M96_19335 PF00281 Ribosomal protein L5 D3M96_19335 PF00673 ribosomal L5P family C-terminus D3M96_19340 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D3M96_19345 PF00238 Ribosomal protein L14p/L23e D3M96_19370 PF00529 HlyD membrane-fusion protein of T1SS D3M96_19375 PF03412 Peptidase C39 family D3M96_19375 PF00005 ABC transporter D3M96_19375 PF00664 ABC transporter transmembrane region D3M96_19390 PF00171 Aldehyde dehydrogenase family D3M96_19400 PF09317 Domain of unknown function (DUF1974) D3M96_19400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3M96_19400 PF02770 Acyl-CoA dehydrogenase, middle domain D3M96_19400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3M96_19405 PF02803 Thiolase, C-terminal domain D3M96_19405 PF00108 Thiolase, N-terminal domain D3M96_19410 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D3M96_19410 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D3M96_19410 PF00378 Enoyl-CoA hydratase/isomerase D3M96_19430 PF13193 AMP-binding enzyme C-terminal domain D3M96_19430 PF00501 AMP-binding enzyme D3M96_19435 PF00667 FAD binding domain D3M96_19435 PF00258 Flavodoxin D3M96_19435 PF00175 Oxidoreductase NAD-binding domain D3M96_19440 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D3M96_19440 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D3M96_19445 PF14824 Sirohaem biosynthesis protein central D3M96_19445 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3M96_19445 PF10414 Sirohaem synthase dimerisation region D3M96_19460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3M96_19460 PF02770 Acyl-CoA dehydrogenase, middle domain D3M96_19460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3M96_19470 PF12833 Helix-turn-helix domain D3M96_19470 PF12852 Cupin D3M96_19475 PF00366 Ribosomal protein S17 D3M96_19480 PF00831 Ribosomal L29 protein D3M96_19485 PF00252 Ribosomal protein L16p/L10e D3M96_19490 PF00189 Ribosomal protein S3, C-terminal domain D3M96_19490 PF07650 KH domain D3M96_19495 PF00237 Ribosomal protein L22p/L17e D3M96_19500 PF00203 Ribosomal protein S19 D3M96_19505 PF03947 Ribosomal Proteins L2, C-terminal domain D3M96_19505 PF00181 Ribosomal Proteins L2, RNA binding domain D3M96_19510 PF00276 Ribosomal protein L23 D3M96_19515 PF00573 Ribosomal protein L4/L1 family D3M96_19520 PF00297 Ribosomal protein L3 D3M96_19525 PF00005 ABC transporter D3M96_19525 PF00571 CBS domain D3M96_19530 PF00528 Binding-protein-dependent transport system inner membrane component D3M96_19535 PF00338 Ribosomal protein S10p/S20e D3M96_19540 PF03143 Elongation factor Tu C-terminal domain D3M96_19540 PF03144 Elongation factor Tu domain 2 D3M96_19540 PF00009 Elongation factor Tu GTP binding domain D3M96_19545 PF14492 Elongation Factor G, domain II D3M96_19545 PF00679 Elongation factor G C-terminus D3M96_19545 PF03764 Elongation factor G, domain IV D3M96_19545 PF00009 Elongation factor Tu GTP binding domain D3M96_19545 PF03144 Elongation factor Tu domain 2 D3M96_19550 PF00177 Ribosomal protein S7p/S5e D3M96_19555 PF00164 Ribosomal protein S12/S23 D3M96_19560 PF00072 Response regulator receiver domain D3M96_19560 PF00486 Transcriptional regulatory protein, C terminal D3M96_19570 PF00672 HAMP domain D3M96_19570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3M96_19570 PF00512 His Kinase A (phospho-acceptor) domain D3M96_19585 PF00127 Copper binding proteins, plastocyanin/azurin family D3M96_19590 PF04997 RNA polymerase Rpb1, domain 1 D3M96_19590 PF04983 RNA polymerase Rpb1, domain 3 D3M96_19590 PF05000 RNA polymerase Rpb1, domain 4 D3M96_19590 PF04998 RNA polymerase Rpb1, domain 5 D3M96_19590 PF00623 RNA polymerase Rpb1, domain 2 D3M96_19595 PF04565 RNA polymerase Rpb2, domain 3 D3M96_19595 PF00562 RNA polymerase Rpb2, domain 6 D3M96_19595 PF04560 RNA polymerase Rpb2, domain 7 D3M96_19595 PF04561 RNA polymerase Rpb2, domain 2 D3M96_19595 PF04563 RNA polymerase beta subunit D3M96_19595 PF10385 RNA polymerase beta subunit external 1 domain D3M96_19600 PF16320 Ribosomal protein L7/L12 dimerisation domain D3M96_19600 PF00542 Ribosomal protein L7/L12 C-terminal domain D3M96_19605 PF00466 Ribosomal protein L10 D3M96_19610 PF00687 Ribosomal protein L1p/L10e family D3M96_19615 PF00298 Ribosomal protein L11, RNA binding domain D3M96_19615 PF03946 Ribosomal protein L11, N-terminal domain D3M96_19620 PF00467 KOW motif D3M96_19620 PF02357 Transcription termination factor nusG D3M96_19635 PF00009 Elongation factor Tu GTP binding domain D3M96_19635 PF03144 Elongation factor Tu domain 2 D3M96_19635 PF03143 Elongation factor Tu C-terminal domain D3M96_19655 PF02195 ParB-like nuclease domain D3M96_19655 PF17762 HTH domain found in ParB protein D3M96_19660 PF13614 AAA domain D3M96_19665 PF02527 rRNA small subunit methyltransferase G D3M96_19670 PF01134 Glucose inhibited division protein A D3M96_19670 PF13932 GidA associated domain D3M96_19675 PF00155 Aminotransferase class I and II D3M96_19685 PF00149 Calcineurin-like phosphoesterase D3M96_19690 PF00990 Diguanylate cyclase, GGDEF domain D3M96_19695 PF02666 Phosphatidylserine decarboxylase D3M96_19705 PF13291 ACT domain D3M96_19705 PF00291 Pyridoxal-phosphate dependent enzyme D3M96_19715 PF02567 Phenazine biosynthesis-like protein D3M96_19750 PF12631 MnmE helical domain D3M96_19750 PF10396 GTP-binding protein TrmE N-terminus D3M96_19750 PF01926 50S ribosome-binding GTPase D3M96_19755 PF07883 Cupin domain D3M96_19755 PF01381 Helix-turn-helix D3M96_19760 PF07687 Peptidase dimerisation domain D3M96_19760 PF01546 Peptidase family M20/M25/M40 D3M96_19765 PF00291 Pyridoxal-phosphate dependent enzyme D3M96_19770 PF02423 Ornithine cyclodeaminase/mu-crystallin family D3M96_19795 PF06628 Catalase-related immune-responsive D3M96_19795 PF00199 Catalase D3M96_19800 PF14849 YidC periplasmic domain D3M96_19800 PF02096 60Kd inner membrane protein D3M96_19805 PF01809 Putative membrane protein insertion efficiency factor D3M96_19810 PF00825 Ribonuclease P D3M96_19815 PF00468 Ribosomal protein L34