locus-tag class description CPY64_00010 PF07286 Protein of unknown function (DUF1445) CPY64_00015 PF03466 LysR substrate binding domain CPY64_00015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_00020 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CPY64_00025 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CPY64_00025 PF00534 Glycosyl transferases group 1 CPY64_00030 PF00313 'Cold-shock' DNA-binding domain CPY64_00035 PF00483 Nucleotidyl transferase CPY64_00040 PF03309 Type III pantothenate kinase CPY64_00045 PF03099 Biotin/lipoate A/B protein ligase family CPY64_00045 PF02237 Biotin protein ligase C terminal domain CPY64_00055 PF07943 Penicillin-binding protein 5, C-terminal domain CPY64_00055 PF00768 D-alanyl-D-alanine carboxypeptidase CPY64_00060 PF01063 Amino-transferase class IV CPY64_00065 PF04359 Protein of unknown function (DUF493) CPY64_00070 PF03099 Biotin/lipoate A/B protein ligase family CPY64_00075 PF00378 Enoyl-CoA hydratase/isomerase CPY64_00080 PF04055 Radical SAM superfamily CPY64_00080 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CPY64_00090 PF03167 Uracil DNA glycosylase superfamily CPY64_00170 PF00218 Indole-3-glycerol phosphate synthase CPY64_00175 PF02885 Glycosyl transferase family, helical bundle domain CPY64_00175 PF00591 Glycosyl transferase family, a/b domain CPY64_00180 PF00117 Glutamine amidotransferase class-I CPY64_00185 PF00425 chorismate binding enzyme CPY64_00185 PF04715 Anthranilate synthase component I, N terminal region CPY64_00190 PF13419 Haloacid dehalogenase-like hydrolase CPY64_00205 PF04379 ApaG domain CPY64_00210 PF06725 3D domain CPY64_00210 PF03562 MltA specific insert domain CPY64_00215 PF01494 FAD binding domain CPY64_00220 PF13098 Thioredoxin-like domain CPY64_00220 PF10411 Disulfide bond isomerase protein N-terminus CPY64_00230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPY64_00230 PF00672 HAMP domain CPY64_00230 PF17200 Single Cache domain 2 CPY64_00240 PF00106 short chain dehydrogenase CPY64_00245 PF00857 Isochorismatase family CPY64_00245 PF00550 Phosphopantetheine attachment site CPY64_00250 PF00425 chorismate binding enzyme CPY64_00260 PF05977 Transmembrane secretion effector CPY64_00265 PF00975 Thioesterase domain CPY64_00265 PF00501 AMP-binding enzyme CPY64_00265 PF00668 Condensation domain CPY64_00265 PF00550 Phosphopantetheine attachment site CPY64_00270 PF00857 Isochorismatase family CPY64_00270 PF00550 Phosphopantetheine attachment site CPY64_00275 PF13193 AMP-binding enzyme C-terminal domain CPY64_00275 PF00501 AMP-binding enzyme CPY64_00285 PF00005 ABC transporter CPY64_00290 PF12399 Branched-chain amino acid ATP-binding cassette transporter CPY64_00290 PF00005 ABC transporter CPY64_00305 PF13458 Periplasmic binding protein CPY64_00320 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_00325 PF00005 ABC transporter CPY64_00335 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CPY64_00335 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CPY64_00355 PF00005 ABC transporter CPY64_00360 PF01032 FecCD transport family CPY64_00365 PF00756 Putative esterase CPY64_00370 PF00270 DEAD/DEAH box helicase CPY64_00370 PF00271 Helicase conserved C-terminal domain CPY64_00375 PF07690 Major Facilitator Superfamily CPY64_00385 PF03466 LysR substrate binding domain CPY64_00385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_00395 PF03741 Integral membrane protein TerC family CPY64_00395 PF03471 Transporter associated domain CPY64_00405 PF05726 Pirin C-terminal cupin domain CPY64_00405 PF02678 Pirin CPY64_00420 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CPY64_00420 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CPY64_00430 PF01063 Amino-transferase class IV CPY64_00435 PF03466 LysR substrate binding domain CPY64_00435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_00450 PF01613 Flavin reductase like domain CPY64_00455 PF07687 Peptidase dimerisation domain CPY64_00455 PF01546 Peptidase family M20/M25/M40 CPY64_00460 PF01979 Amidohydrolase family CPY64_00465 PF01979 Amidohydrolase family CPY64_00470 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_00475 PF00005 ABC transporter CPY64_00485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_00485 PF03466 LysR substrate binding domain CPY64_00490 PF00497 Bacterial extracellular solute-binding proteins, family 3 CPY64_00495 PF00005 ABC transporter CPY64_00500 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_00505 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_00520 PF01548 Transposase CPY64_00520 PF02371 Transposase IS116/IS110/IS902 family CPY64_00525 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CPY64_00525 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CPY64_00530 PF00171 Aldehyde dehydrogenase family CPY64_00540 PF06433 Methylamine dehydrogenase heavy chain (MADH) CPY64_00550 PF00578 AhpC/TSA family CPY64_00555 PF02975 Methylamine dehydrogenase, L chain CPY64_00565 PF12833 Helix-turn-helix domain CPY64_00565 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CPY64_00575 PF01208 Uroporphyrinogen decarboxylase (URO-D) CPY64_00580 PF17764 3′ DNA-binding domain (3′BD) CPY64_00580 PF18074 Primosomal protein N C-terminal domain CPY64_00580 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CPY64_00580 PF00271 Helicase conserved C-terminal domain CPY64_00580 PF00270 DEAD/DEAH box helicase CPY64_00585 PF13361 UvrD-like helicase C-terminal domain CPY64_00585 PF00580 UvrD/REP helicase N-terminal domain CPY64_00595 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPY64_00595 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CPY64_00600 PF01493 GXGXG motif CPY64_00600 PF01645 Conserved region in glutamate synthase CPY64_00600 PF04898 Glutamate synthase central domain CPY64_00600 PF00310 Glutamine amidotransferases class-II CPY64_00605 PF00378 Enoyl-CoA hydratase/isomerase CPY64_00615 PF02515 CoA-transferase family III CPY64_00620 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CPY64_00620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CPY64_00620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CPY64_00630 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPY64_00645 PF00593 TonB dependent receptor CPY64_00645 PF07715 TonB-dependent Receptor Plug Domain CPY64_00650 PF04262 Glutamate-cysteine ligase CPY64_00660 PF03472 Autoinducer binding domain CPY64_00660 PF00196 Bacterial regulatory proteins, luxR family CPY64_00665 PF00561 alpha/beta hydrolase fold CPY64_00675 PF07690 Major Facilitator Superfamily CPY64_00680 PF03458 UPF0126 domain CPY64_00685 PF04172 LrgB-like family CPY64_00695 PF01042 Endoribonuclease L-PSP CPY64_00700 PF01042 Endoribonuclease L-PSP CPY64_00715 PF05662 Coiled stalk of trimeric autotransporter adhesin CPY64_00715 PF03895 YadA-like membrane anchor domain CPY64_00715 PF05658 Head domain of trimeric autotransporter adhesin CPY64_00715 PF13018 Extended Signal Peptide of Type V secretion system CPY64_00735 PF01810 LysE type translocator CPY64_00745 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPY64_00745 PF01411 tRNA synthetases class II (A) CPY64_00745 PF02272 DHHA1 domain CPY64_00750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_00750 PF03466 LysR substrate binding domain CPY64_00760 PF00202 Aminotransferase class-III CPY64_00775 PF01923 Cobalamin adenosyltransferase CPY64_00790 PF00004 ATPase family associated with various cellular activities (AAA) CPY64_00790 PF07724 AAA domain (Cdc48 subfamily) CPY64_00795 PF00227 Proteasome subunit CPY64_00800 PF01258 Prokaryotic dksA/traR C4-type zinc finger CPY64_00805 PF02492 CobW/HypB/UreG, nucleotide-binding domain CPY64_00805 PF07683 Cobalamin synthesis protein cobW C-terminal domain CPY64_00810 PF01475 Ferric uptake regulator family CPY64_00815 PF00005 ABC transporter CPY64_00820 PF00950 ABC 3 transport family CPY64_00825 PF01297 Zinc-uptake complex component A periplasmic CPY64_00830 PF02899 Phage integrase, N-terminal SAM-like domain CPY64_00830 PF00589 Phage integrase family CPY64_00840 PF01678 Diaminopimelate epimerase CPY64_00845 PF03279 Bacterial lipid A biosynthesis acyltransferase CPY64_00855 PF02772 S-adenosylmethionine synthetase, central domain CPY64_00855 PF02773 S-adenosylmethionine synthetase, C-terminal domain CPY64_00855 PF00438 S-adenosylmethionine synthetase, N-terminal domain CPY64_00860 PF05221 S-adenosyl-L-homocysteine hydrolase CPY64_00860 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CPY64_00865 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CPY64_00870 PF02219 Methylenetetrahydrofolate reductase CPY64_00880 PF01464 Transglycosylase SLT domain CPY64_00880 PF14718 Soluble lytic murein transglycosylase L domain CPY64_00885 PF12627 Probable RNA and SrmB- binding site of polymerase A CPY64_00885 PF01743 Poly A polymerase head domain CPY64_00900 PF01795 MraW methylase family CPY64_00905 PF01925 Sulfite exporter TauE/SafE CPY64_00910 PF00311 Phosphoenolpyruvate carboxylase CPY64_00915 PF00920 Dehydratase family CPY64_00920 PF02540 NAD synthase CPY64_00930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CPY64_00930 PF02770 Acyl-CoA dehydrogenase, middle domain CPY64_00930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CPY64_00935 PF02515 CoA-transferase family III CPY64_00940 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_00950 PF01594 AI-2E family transporter CPY64_00965 PF13609 Gram-negative porin CPY64_00970 PF00171 Aldehyde dehydrogenase family CPY64_00985 PF14525 AraC-binding-like domain CPY64_00985 PF12833 Helix-turn-helix domain CPY64_00990 PF00440 Bacterial regulatory proteins, tetR family CPY64_00990 PF08361 MAATS-type transcriptional repressor, C-terminal region CPY64_01005 PF13193 AMP-binding enzyme C-terminal domain CPY64_01005 PF00501 AMP-binding enzyme CPY64_01015 PF01494 FAD binding domain CPY64_01020 PF07690 Major Facilitator Superfamily CPY64_01030 PF00248 Aldo/keto reductase family CPY64_01035 PF07690 Major Facilitator Superfamily CPY64_01040 PF03466 LysR substrate binding domain CPY64_01040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_01050 PF05974 Domain of unknown function (DUF892) CPY64_01070 PF01047 MarR family CPY64_01075 PF00111 2Fe-2S iron-sulfur cluster binding domain CPY64_01075 PF00970 Oxidoreductase FAD-binding domain CPY64_01075 PF00175 Oxidoreductase NAD-binding domain CPY64_01085 PF07715 TonB-dependent Receptor Plug Domain CPY64_01085 PF00593 TonB dependent receptor CPY64_01090 PF01497 Periplasmic binding protein CPY64_01095 PF00005 ABC transporter CPY64_01100 PF01032 FecCD transport family CPY64_01105 PF01032 FecCD transport family CPY64_01110 PF00005 ABC transporter CPY64_01115 PF00664 ABC transporter transmembrane region CPY64_01115 PF00005 ABC transporter CPY64_01115 PF08021 Siderophore-interacting FAD-binding domain CPY64_01115 PF04954 Siderophore-interacting protein CPY64_01120 PF09330 D-lactate dehydrogenase, membrane binding CPY64_01120 PF01565 FAD binding domain CPY64_01125 PF01070 FMN-dependent dehydrogenase CPY64_01130 PF00392 Bacterial regulatory proteins, gntR family CPY64_01130 PF07729 FCD domain CPY64_01135 PF02652 L-lactate permease CPY64_01150 PF00392 Bacterial regulatory proteins, gntR family CPY64_01155 PF01037 Lrp/AsnC ligand binding domain CPY64_01160 PF00266 Aminotransferase class-V CPY64_01165 PF00324 Amino acid permease CPY64_01180 PF00578 AhpC/TSA family CPY64_01185 PF01970 Tripartite tricarboxylate transporter TctA family CPY64_01195 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_01200 PF08220 DeoR-like helix-turn-helix domain CPY64_01200 PF00455 DeoR C terminal sensor domain CPY64_01205 PF00005 ABC transporter CPY64_01205 PF08402 TOBE domain CPY64_01210 PF13416 Bacterial extracellular solute-binding protein CPY64_01215 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_01220 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_01230 PF07715 TonB-dependent Receptor Plug Domain CPY64_01230 PF07660 Secretin and TonB N terminus short domain CPY64_01230 PF00593 TonB dependent receptor CPY64_01245 PF03741 Integral membrane protein TerC family CPY64_01250 PF05698 Bacterial trigger factor protein (TF) C-terminus CPY64_01260 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CPY64_01270 PF01966 HD domain CPY64_01275 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_01280 PF13378 Enolase C-terminal domain-like CPY64_01280 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CPY64_01285 PF01479 S4 domain CPY64_01290 PF07690 Major Facilitator Superfamily CPY64_01295 PF00440 Bacterial regulatory proteins, tetR family CPY64_01305 PF01425 Amidase CPY64_01310 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_01315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_01315 PF03466 LysR substrate binding domain CPY64_01340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_01340 PF00183 Hsp90 protein CPY64_01350 PF18331 PKHD-type hydroxylase C-terminal domain CPY64_01350 PF13640 2OG-Fe(II) oxygenase superfamily CPY64_01355 PF01070 FMN-dependent dehydrogenase CPY64_01360 PF01510 N-acetylmuramoyl-L-alanine amidase CPY64_01375 PF00448 SRP54-type protein, GTPase domain CPY64_01375 PF02978 Signal peptide binding domain CPY64_01375 PF02881 SRP54-type protein, helical bundle domain CPY64_01380 PF04972 BON domain CPY64_01380 PF01476 LysM domain CPY64_01385 PF02597 ThiS family CPY64_01385 PF05690 Thiazole biosynthesis protein ThiG CPY64_01390 PF00561 alpha/beta hydrolase fold CPY64_01395 PF02390 Putative methyltransferase CPY64_01420 PF00857 Isochorismatase family CPY64_01420 PF00550 Phosphopantetheine attachment site CPY64_01425 PF14525 AraC-binding-like domain CPY64_01425 PF12833 Helix-turn-helix domain CPY64_01445 PF03466 LysR substrate binding domain CPY64_01445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_01450 PF01699 Sodium/calcium exchanger protein CPY64_01455 PF00072 Response regulator receiver domain CPY64_01455 PF00990 Diguanylate cyclase, GGDEF domain CPY64_01460 PF01323 DSBA-like thioredoxin domain CPY64_01465 PF07690 Major Facilitator Superfamily CPY64_01465 PF00083 Sugar (and other) transporter CPY64_01470 PF00596 Class II Aldolase and Adducin N-terminal domain CPY64_01485 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CPY64_01490 PF05899 Protein of unknown function (DUF861) CPY64_01490 PF07883 Cupin domain CPY64_01495 PF03466 LysR substrate binding domain CPY64_01495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_01500 PF01545 Cation efflux family CPY64_01500 PF16916 Dimerisation domain of Zinc Transporter CPY64_01505 PF09334 tRNA synthetases class I (M) CPY64_01505 PF01588 Putative tRNA binding domain CPY64_01515 PF10609 NUBPL iron-transfer P-loop NTPase CPY64_01530 PF00692 dUTPase CPY64_01535 PF01276 Orn/Lys/Arg decarboxylase, major domain CPY64_01535 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CPY64_01535 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CPY64_01545 PF01597 Glycine cleavage H-protein CPY64_01550 PF00186 Dihydrofolate reductase CPY64_01555 PF00303 Thymidylate synthase CPY64_01560 PF02566 OsmC-like protein CPY64_01565 PF00115 Cytochrome C and Quinol oxidase polypeptide I CPY64_01590 PF03232 Ubiquinone biosynthesis protein COQ7 CPY64_01595 PF00224 Pyruvate kinase, barrel domain CPY64_01595 PF02887 Pyruvate kinase, alpha/beta domain CPY64_01600 PF03928 Haem-degrading CPY64_01605 PF05161 MOFRL family CPY64_01605 PF13660 Domain of unknown function (DUF4147) CPY64_01610 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CPY64_01610 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CPY64_01615 PF01261 Xylose isomerase-like TIM barrel CPY64_01620 PF00205 Thiamine pyrophosphate enzyme, central domain CPY64_01620 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPY64_01620 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CPY64_01625 PF03466 LysR substrate binding domain CPY64_01625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_01635 PF00860 Permease family CPY64_01640 PF01361 Tautomerase enzyme CPY64_01645 PF00596 Class II Aldolase and Adducin N-terminal domain CPY64_01650 PF04115 Ureidoglycolate lyase CPY64_01655 PF01014 Uricase CPY64_01655 PF09349 OHCU decarboxylase CPY64_01660 PF03466 LysR substrate binding domain CPY64_01660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_01665 PF00953 Glycosyl transferase family 4 CPY64_01670 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CPY64_01670 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CPY64_01670 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CPY64_01675 PF01370 NAD dependent epimerase/dehydratase family CPY64_01685 PF00534 Glycosyl transferases group 1 CPY64_01685 PF13439 Glycosyltransferase Family 4 CPY64_01695 PF13477 Glycosyl transferase 4-like CPY64_01695 PF00534 Glycosyl transferases group 1 CPY64_01700 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CPY64_01700 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CPY64_01700 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CPY64_01700 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CPY64_01705 PF02913 FAD linked oxidases, C-terminal domain CPY64_01705 PF01565 FAD binding domain CPY64_01715 PF01557 Fumarylacetoacetate (FAA) hydrolase family CPY64_01720 PF04209 homogentisate 1,2-dioxygenase CPY64_01730 PF01494 FAD binding domain CPY64_01740 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CPY64_01740 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CPY64_01740 PF06827 Zinc finger found in FPG and IleRS CPY64_01750 PF03550 Outer membrane lipoprotein LolB CPY64_01755 PF00288 GHMP kinases N terminal domain CPY64_01755 PF08544 GHMP kinases C terminal CPY64_01765 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CPY64_01765 PF14572 Phosphoribosyl synthetase-associated domain CPY64_01770 PF14693 Ribosomal protein TL5, C-terminal domain CPY64_01770 PF01386 Ribosomal L25p family CPY64_01775 PF01195 Peptidyl-tRNA hydrolase CPY64_01785 PF01926 50S ribosome-binding GTPase CPY64_01785 PF06071 Protein of unknown function (DUF933) CPY64_01805 PF00378 Enoyl-CoA hydratase/isomerase CPY64_01810 PF13537 Glutamine amidotransferase domain CPY64_01810 PF00733 Asparagine synthase CPY64_01815 PF00892 EamA-like transporter family CPY64_01825 PF00005 ABC transporter CPY64_01825 PF12848 ABC transporter CPY64_01825 PF16326 ABC transporter C-terminal domain CPY64_01835 PF03797 Autotransporter beta-domain CPY64_01835 PF00657 GDSL-like Lipase/Acylhydrolase CPY64_01840 PF00484 Carbonic anhydrase CPY64_01845 PF03466 LysR substrate binding domain CPY64_01845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_01855 PF00005 ABC transporter CPY64_01860 PF03379 CcmB protein CPY64_01865 PF01578 Cytochrome C assembly protein CPY64_01875 PF03100 CcmE CPY64_01880 PF01578 Cytochrome C assembly protein CPY64_01880 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CPY64_01885 PF08534 Redoxin CPY64_01890 PF03918 Cytochrome C biogenesis protein CPY64_01900 PF02683 Cytochrome C biogenesis protein transmembrane region CPY64_01910 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CPY64_01910 PF12833 Helix-turn-helix domain CPY64_01910 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CPY64_01910 PF02805 Metal binding domain of Ada CPY64_01930 PF02653 Branched-chain amino acid transport system / permease component CPY64_01935 PF02653 Branched-chain amino acid transport system / permease component CPY64_01935 PF11862 Domain of unknown function (DUF3382) CPY64_01940 PF12399 Branched-chain amino acid ATP-binding cassette transporter CPY64_01940 PF00005 ABC transporter CPY64_01945 PF00005 ABC transporter CPY64_01950 PF00034 Cytochrome c CPY64_01950 PF03150 Di-haem cytochrome c peroxidase CPY64_01955 PF01842 ACT domain CPY64_01955 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPY64_01955 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CPY64_01960 PF02082 Transcriptional regulator CPY64_01965 PF01152 Bacterial-like globin CPY64_01970 PF00535 Glycosyl transferase family 2 CPY64_02010 PF02634 FdhD/NarQ family CPY64_02015 PF12838 4Fe-4S dicluster domain CPY64_02015 PF01568 Molydopterin dinucleotide binding domain CPY64_02015 PF00384 Molybdopterin oxidoreductase CPY64_02015 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CPY64_02015 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CPY64_02020 PF00037 4Fe-4S binding domain CPY64_02020 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CPY64_02020 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CPY64_02030 PF12727 PBP superfamily domain CPY64_02030 PF12728 Helix-turn-helix domain CPY64_02035 PF06463 Molybdenum Cofactor Synthesis C CPY64_02035 PF04055 Radical SAM superfamily CPY64_02040 PF12804 MobA-like NTP transferase domain CPY64_02045 PF00994 Probable molybdopterin binding domain CPY64_02045 PF03454 MoeA C-terminal region (domain IV) CPY64_02045 PF03453 MoeA N-terminal region (domain I and II) CPY64_02050 PF00994 Probable molybdopterin binding domain CPY64_02055 PF02391 MoaE protein CPY64_02065 PF01967 MoaC family CPY64_02070 PF00072 Response regulator receiver domain CPY64_02070 PF00196 Bacterial regulatory proteins, luxR family CPY64_02075 PF00989 PAS fold CPY64_02075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_02075 PF00512 His Kinase A (phospho-acceptor) domain CPY64_02080 PF03480 Bacterial extracellular solute-binding protein, family 7 CPY64_02085 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CPY64_02090 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_02095 PF08534 Redoxin CPY64_02115 PF06968 Biotin and Thiamin Synthesis associated domain CPY64_02115 PF04055 Radical SAM superfamily CPY64_02130 PF00873 AcrB/AcrD/AcrF family CPY64_02135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CPY64_02190 PF00563 EAL domain CPY64_02190 PF03707 Bacterial signalling protein N terminal repeat CPY64_02190 PF00990 Diguanylate cyclase, GGDEF domain CPY64_02195 PF00795 Carbon-nitrogen hydrolase CPY64_02200 PF03471 Transporter associated domain CPY64_02200 PF00571 CBS domain CPY64_02205 PF02130 Uncharacterized protein family UPF0054 CPY64_02210 PF02562 PhoH-like protein CPY64_02215 PF04055 Radical SAM superfamily CPY64_02215 PF01938 TRAM domain CPY64_02215 PF00919 Uncharacterized protein family UPF0004 CPY64_02225 PF00557 Metallopeptidase family M24 CPY64_02230 PF07549 SecD/SecF GG Motif CPY64_02230 PF02355 Protein export membrane protein CPY64_02235 PF07549 SecD/SecF GG Motif CPY64_02235 PF13721 SecD export protein N-terminal TM region CPY64_02235 PF02355 Protein export membrane protein CPY64_02240 PF02699 Preprotein translocase subunit CPY64_02245 PF01702 Queuine tRNA-ribosyltransferase CPY64_02250 PF02547 Queuosine biosynthesis protein CPY64_02255 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CPY64_02270 PF05957 Bacterial protein of unknown function (DUF883) CPY64_02285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_02285 PF03466 LysR substrate binding domain CPY64_02300 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family CPY64_02315 PF01425 Amidase CPY64_02325 PF08946 Osmosensory transporter coiled coil CPY64_02325 PF00083 Sugar (and other) transporter CPY64_02330 PF03466 LysR substrate binding domain CPY64_02330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_02335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CPY64_02340 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CPY64_02345 PF01464 Transglycosylase SLT domain CPY64_02350 PF00155 Aminotransferase class I and II CPY64_02360 PF00390 Malic enzyme, N-terminal domain CPY64_02360 PF03949 Malic enzyme, NAD binding domain CPY64_02360 PF01515 Phosphate acetyl/butaryl transferase CPY64_02370 PF01337 Barstar (barnase inhibitor) CPY64_02375 PF04452 RNA methyltransferase CPY64_02380 PF02779 Transketolase, pyrimidine binding domain CPY64_02380 PF02780 Transketolase, C-terminal domain CPY64_02380 PF00456 Transketolase, thiamine diphosphate binding domain CPY64_02385 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CPY64_02385 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CPY64_02390 PF00162 Phosphoglycerate kinase CPY64_02405 PF00171 Aldehyde dehydrogenase family CPY64_02415 PF00994 Probable molybdopterin binding domain CPY64_02420 PF01116 Fructose-bisphosphate aldolase class-II CPY64_02425 PF01259 SAICAR synthetase CPY64_02430 PF00731 AIR carboxylase CPY64_02435 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CPY64_02435 PF02222 ATP-grasp domain CPY64_02440 PF01300 Telomere recombination CPY64_02440 PF03481 Putative GTP-binding controlling metal-binding CPY64_02445 PF12697 Alpha/beta hydrolase family CPY64_02450 PF01575 MaoC like domain CPY64_02450 PF00171 Aldehyde dehydrogenase family CPY64_02455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CPY64_02455 PF02770 Acyl-CoA dehydrogenase, middle domain CPY64_02455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CPY64_02460 PF03466 LysR substrate binding domain CPY64_02460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_02470 PF00551 Formyl transferase CPY64_02475 PF01266 FAD dependent oxidoreductase CPY64_02480 PF01613 Flavin reductase like domain CPY64_02485 PF01243 Pyridoxamine 5'-phosphate oxidase CPY64_02485 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CPY64_02495 PF00899 ThiF family CPY64_02505 PF00425 chorismate binding enzyme CPY64_02505 PF04715 Anthranilate synthase component I, N terminal region CPY64_02510 PF00005 ABC transporter CPY64_02510 PF17755 UvrA DNA-binding domain CPY64_02510 PF17760 UvrA interaction domain CPY64_02515 PF00535 Glycosyl transferase family 2 CPY64_02525 PF00005 ABC transporter CPY64_02525 PF12848 ABC transporter CPY64_02545 PF03776 Septum formation topological specificity factor MinE CPY64_02550 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CPY64_02555 PF03775 Septum formation inhibitor MinC, C-terminal domain CPY64_02555 PF05209 Septum formation inhibitor MinC, N-terminal domain CPY64_02560 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CPY64_02560 PF00749 tRNA synthetases class I (E and Q), catalytic domain CPY64_02565 PF01654 Cytochrome bd terminal oxidase subunit I CPY64_02570 PF02322 Cytochrome bd terminal oxidase subunit II CPY64_02575 PF00654 Voltage gated chloride channel CPY64_02585 PF00271 Helicase conserved C-terminal domain CPY64_02585 PF09382 RQC domain CPY64_02585 PF00270 DEAD/DEAH box helicase CPY64_02585 PF16124 RecQ zinc-binding CPY64_02585 PF00570 HRDC domain CPY64_02590 PF03477 ATP cone domain CPY64_02590 PF02867 Ribonucleotide reductase, barrel domain CPY64_02590 PF00317 Ribonucleotide reductase, all-alpha domain CPY64_02595 PF00268 Ribonucleotide reductase, small chain CPY64_02600 PF00111 2Fe-2S iron-sulfur cluster binding domain CPY64_02615 PF02381 MraZ protein, putative antitoxin-like CPY64_02620 PF01795 MraW methylase family CPY64_02625 PF04999 Cell division protein FtsL CPY64_02630 PF03717 Penicillin-binding Protein dimerisation domain CPY64_02630 PF00905 Penicillin binding protein transpeptidase domain CPY64_02635 PF02875 Mur ligase family, glutamate ligase domain CPY64_02635 PF01225 Mur ligase family, catalytic domain CPY64_02635 PF08245 Mur ligase middle domain CPY64_02640 PF00953 Glycosyl transferase family 4 CPY64_02645 PF02875 Mur ligase family, glutamate ligase domain CPY64_02645 PF08245 Mur ligase middle domain CPY64_02650 PF01098 Cell cycle protein CPY64_02655 PF04101 Glycosyltransferase family 28 C-terminal domain CPY64_02655 PF03033 Glycosyltransferase family 28 N-terminal domain CPY64_02660 PF01225 Mur ligase family, catalytic domain CPY64_02660 PF02875 Mur ligase family, glutamate ligase domain CPY64_02660 PF08245 Mur ligase middle domain CPY64_02665 PF01820 D-ala D-ala ligase N-terminus CPY64_02665 PF07478 D-ala D-ala ligase C-terminus CPY64_02670 PF08478 POTRA domain, FtsQ-type CPY64_02670 PF03799 Cell division protein FtsQ CPY64_02675 PF02491 SHS2 domain inserted in FTSA CPY64_02680 PF00091 Tubulin/FtsZ family, GTPase domain CPY64_02680 PF12327 FtsZ family, C-terminal domain CPY64_02685 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CPY64_02695 PF01551 Peptidase family M23 CPY64_02695 PF01464 Transglycosylase SLT domain CPY64_02695 PF10145 Phage-related minor tail protein CPY64_02700 PF01043 SecA preprotein cross-linking domain CPY64_02700 PF07516 SecA Wing and Scaffold domain CPY64_02700 PF07517 SecA DEAD-like domain CPY64_02700 PF02810 SEC-C motif CPY64_02710 PF03448 MgtE intracellular N domain CPY64_02710 PF01769 Divalent cation transporter CPY64_02710 PF00571 CBS domain CPY64_02715 PF03061 Thioesterase superfamily CPY64_02720 PF01546 Peptidase family M20/M25/M40 CPY64_02720 PF07687 Peptidase dimerisation domain CPY64_02725 PF00501 AMP-binding enzyme CPY64_02725 PF13193 AMP-binding enzyme C-terminal domain CPY64_02730 PF00459 Inositol monophosphatase family CPY64_02735 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CPY64_02735 PF01266 FAD dependent oxidoreductase CPY64_02750 PF00005 ABC transporter CPY64_02750 PF09383 NIL domain CPY64_02755 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_02760 PF03180 NLPA lipoprotein CPY64_02765 PF00497 Bacterial extracellular solute-binding proteins, family 3 CPY64_02770 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_02775 PF00005 ABC transporter CPY64_02785 PF00483 Nucleotidyl transferase CPY64_02790 PF01636 Phosphotransferase enzyme family CPY64_02795 PF04453 LPS transport system D CPY64_02800 PF00639 PPIC-type PPIASE domain CPY64_02800 PF09312 SurA N-terminal domain CPY64_02805 PF00398 Ribosomal RNA adenine dimethylase CPY64_02810 PF07670 Nucleoside recognition CPY64_02815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CPY64_02825 PF01553 Acyltransferase CPY64_02835 PF05746 DALR anticodon binding domain CPY64_02835 PF02092 Glycyl-tRNA synthetase beta subunit CPY64_02840 PF02091 Glycyl-tRNA synthetase alpha subunit CPY64_02845 PF00378 Enoyl-CoA hydratase/isomerase CPY64_02850 PF05683 Fumarase C-terminus CPY64_02850 PF05681 Fumarate hydratase (Fumerase) CPY64_02855 PF00440 Bacterial regulatory proteins, tetR family CPY64_02865 PF07690 Major Facilitator Superfamily CPY64_02880 PF03167 Uracil DNA glycosylase superfamily CPY64_02885 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CPY64_02890 PF12627 Probable RNA and SrmB- binding site of polymerase A CPY64_02890 PF12626 Polymerase A arginine-rich C-terminus CPY64_02890 PF01743 Poly A polymerase head domain CPY64_02900 PF00308 Bacterial dnaA protein CPY64_02900 PF08299 Bacterial dnaA protein helix-turn-helix CPY64_02905 PF02769 AIR synthase related protein, C-terminal domain CPY64_02905 PF00586 AIR synthase related protein, N-terminal domain CPY64_02910 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CPY64_02920 PF01119 DNA mismatch repair protein, C-terminal domain CPY64_02920 PF08676 MutL C terminal dimerisation domain CPY64_02925 PF09335 SNARE associated Golgi protein CPY64_02930 PF01520 N-acetylmuramoyl-L-alanine amidase CPY64_02930 PF11741 AMIN domain CPY64_02935 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CPY64_02945 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_02950 PF00390 Malic enzyme, N-terminal domain CPY64_02950 PF03949 Malic enzyme, NAD binding domain CPY64_02950 PF01515 Phosphate acetyl/butaryl transferase CPY64_02955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_02955 PF03466 LysR substrate binding domain CPY64_02960 PF00171 Aldehyde dehydrogenase family CPY64_02965 PF00701 Dihydrodipicolinate synthetase family CPY64_02975 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_03010 PF01638 HxlR-like helix-turn-helix CPY64_03015 PF13460 NAD(P)H-binding CPY64_03025 PF07690 Major Facilitator Superfamily CPY64_03030 PF04073 Aminoacyl-tRNA editing domain CPY64_03035 PF00589 Phage integrase family CPY64_03035 PF02899 Phage integrase, N-terminal SAM-like domain CPY64_03045 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_03050 PF00005 ABC transporter CPY64_03050 PF03459 TOBE domain CPY64_03055 PF03459 TOBE domain CPY64_03055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_03065 PF00580 UvrD/REP helicase N-terminal domain CPY64_03065 PF13361 UvrD-like helicase C-terminal domain CPY64_03065 PF12705 PD-(D/E)XK nuclease superfamily CPY64_03075 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CPY64_03075 PF12169 DNA polymerase III subunits gamma and tau domain III CPY64_03075 PF12170 DNA polymerase III tau subunit V interacting with alpha CPY64_03080 PF02575 YbaB/EbfC DNA-binding family CPY64_03085 PF13662 Toprim domain CPY64_03085 PF02132 RecR protein CPY64_03090 PF09084 NMT1/THI5 like CPY64_03095 PF00005 ABC transporter CPY64_03100 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_03110 PF04773 FecR protein CPY64_03110 PF16220 Domain of unknown function (DUF4880) CPY64_03115 PF07715 TonB-dependent Receptor Plug Domain CPY64_03115 PF00593 TonB dependent receptor CPY64_03125 PF00923 Transaldolase/Fructose-6-phosphate aldolase CPY64_03130 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CPY64_03130 PF00117 Glutamine amidotransferase class-I CPY64_03135 PF02142 MGS-like domain CPY64_03135 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CPY64_03135 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPY64_03150 PF00300 Histidine phosphatase superfamily (branch 1) CPY64_03155 PF00860 Permease family CPY64_03160 PF01272 Transcription elongation factor, GreA/GreB, C-term CPY64_03160 PF03449 Transcription elongation factor, N-terminal CPY64_03165 PF01985 CRS1 / YhbY (CRM) domain CPY64_03170 PF01728 FtsJ-like methyltransferase CPY64_03175 PF00004 ATPase family associated with various cellular activities (AAA) CPY64_03175 PF17862 AAA+ lid domain CPY64_03175 PF06480 FtsH Extracellular CPY64_03175 PF01434 Peptidase family M41 CPY64_03180 PF00809 Pterin binding enzyme CPY64_03185 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CPY64_03185 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CPY64_03185 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CPY64_03185 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CPY64_03195 PF02541 Ppx/GppA phosphatase family CPY64_03200 PF02503 Polyphosphate kinase middle domain CPY64_03200 PF13090 Polyphosphate kinase C-terminal domain 2 CPY64_03200 PF13089 Polyphosphate kinase N-terminal domain CPY64_03200 PF17941 Polyphosphate kinase C-terminal domain 1 CPY64_03205 PF12849 PBP superfamily domain CPY64_03210 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_03215 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_03220 PF00005 ABC transporter CPY64_03225 PF00501 AMP-binding enzyme CPY64_03225 PF13193 AMP-binding enzyme C-terminal domain CPY64_03240 PF00072 Response regulator receiver domain CPY64_03240 PF00486 Transcriptional regulatory protein, C terminal CPY64_03245 PF00672 HAMP domain CPY64_03245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_03245 PF00512 His Kinase A (phospho-acceptor) domain CPY64_03260 PF03466 LysR substrate binding domain CPY64_03260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_03275 PF01593 Flavin containing amine oxidoreductase CPY64_03280 PF00034 Cytochrome c CPY64_03280 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPY64_03285 PF04239 Protein of unknown function (DUF421) CPY64_03295 PF00884 Sulfatase CPY64_03305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_03305 PF03466 LysR substrate binding domain CPY64_03325 PF00474 Sodium:solute symporter family CPY64_03335 PF08223 PaaX-like protein C-terminal domain CPY64_03335 PF07848 PaaX-like protein CPY64_03340 PF13091 PLD-like domain CPY64_03340 PF13396 Phospholipase_D-nuclease N-terminal CPY64_03355 PF01300 Telomere recombination CPY64_03360 PF02163 Peptidase family M50 CPY64_03365 PF00701 Dihydrodipicolinate synthetase family CPY64_03370 PF06804 NlpB/DapX lipoprotein CPY64_03390 PF00202 Aminotransferase class-III CPY64_03395 PF00155 Aminotransferase class I and II CPY64_03400 PF00067 Cytochrome P450 CPY64_03405 PF03594 Benzoate membrane transport protein CPY64_03415 PF08007 Cupin superfamily protein CPY64_03420 PF00488 MutS domain V CPY64_03420 PF05190 MutS family domain IV CPY64_03420 PF05192 MutS domain III CPY64_03420 PF05188 MutS domain II CPY64_03420 PF01624 MutS domain I CPY64_03430 PF00593 TonB dependent receptor CPY64_03430 PF07715 TonB-dependent Receptor Plug Domain CPY64_03435 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CPY64_03440 PF00005 ABC transporter CPY64_03440 PF02687 FtsX-like permease family CPY64_03440 PF12704 MacB-like periplasmic core domain CPY64_03445 PF02321 Outer membrane efflux protein CPY64_03450 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CPY64_03455 PF00664 ABC transporter transmembrane region CPY64_03455 PF00005 ABC transporter CPY64_03465 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_03470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_03470 PF03466 LysR substrate binding domain CPY64_03475 PF00296 Luciferase-like monooxygenase CPY64_03485 PF00924 Mechanosensitive ion channel CPY64_03485 PF05552 Conserved TM helix CPY64_03490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_03490 PF03466 LysR substrate binding domain CPY64_03495 PF14765 Polyketide synthase dehydratase CPY64_03495 PF00698 Acyl transferase domain CPY64_03495 PF00550 Phosphopantetheine attachment site CPY64_03495 PF08659 KR domain CPY64_03495 PF02801 Beta-ketoacyl synthase, C-terminal domain CPY64_03495 PF08240 Alcohol dehydrogenase GroES-like domain CPY64_03495 PF00107 Zinc-binding dehydrogenase CPY64_03495 PF00109 Beta-ketoacyl synthase, N-terminal domain CPY64_03495 PF16197 Ketoacyl-synthetase C-terminal extension CPY64_03500 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CPY64_03515 PF01039 Carboxyl transferase domain CPY64_03520 PF06857 Malonate decarboxylase delta subunit (MdcD) CPY64_03525 PF16957 Malonate decarboxylase, alpha subunit, transporter CPY64_03530 PF01425 Amidase CPY64_03535 PF02667 Short chain fatty acid transporter CPY64_03545 PF00588 SpoU rRNA Methylase family CPY64_03550 PF00459 Inositol monophosphatase family CPY64_03555 PF03741 Integral membrane protein TerC family CPY64_03555 PF03471 Transporter associated domain CPY64_03560 PF02673 Bacitracin resistance protein BacA CPY64_03565 PF00149 Calcineurin-like phosphoesterase CPY64_03570 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CPY64_03580 PF09190 DALR domain CPY64_03580 PF01406 tRNA synthetases class I (C) catalytic domain CPY64_03590 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CPY64_03595 PF09179 TilS substrate binding domain CPY64_03595 PF01171 PP-loop family CPY64_03600 PF13840 ACT domain CPY64_03600 PF01842 ACT domain CPY64_03600 PF00696 Amino acid kinase family CPY64_03615 PF01145 SPFH domain / Band 7 family CPY64_03625 PF12833 Helix-turn-helix domain CPY64_03625 PF02311 AraC-like ligand binding domain CPY64_03630 PF00795 Carbon-nitrogen hydrolase CPY64_03640 PF00132 Bacterial transferase hexapeptide (six repeats) CPY64_03650 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_03655 PF08402 TOBE domain CPY64_03655 PF00005 ABC transporter CPY64_03660 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CPY64_03660 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CPY64_03665 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CPY64_03670 PF02233 NAD(P) transhydrogenase beta subunit CPY64_03695 PF01070 FMN-dependent dehydrogenase CPY64_03700 PF13409 Glutathione S-transferase, N-terminal domain CPY64_03705 PF03358 NADPH-dependent FMN reductase CPY64_03720 PF02245 Methylpurine-DNA glycosylase (MPG) CPY64_03730 PF04241 Protein of unknown function (DUF423) CPY64_03735 PF01544 CorA-like Mg2+ transporter protein CPY64_03740 PF02770 Acyl-CoA dehydrogenase, middle domain CPY64_03740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CPY64_03740 PF18158 Adaptive response protein AidB N-terminal domain CPY64_03750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPY64_03755 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_03760 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_03760 PF12911 N-terminal TM domain of oligopeptide transport permease C CPY64_03765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPY64_03765 PF00005 ABC transporter CPY64_03775 PF00158 Sigma-54 interaction domain CPY64_03775 PF02954 Bacterial regulatory protein, Fis family CPY64_03775 PF01590 GAF domain CPY64_03780 PF00171 Aldehyde dehydrogenase family CPY64_03785 PF00465 Iron-containing alcohol dehydrogenase CPY64_03790 PF08207 Elongation factor P (EF-P) KOW-like domain CPY64_03790 PF09285 Elongation factor P, C-terminal CPY64_03790 PF01132 Elongation factor P (EF-P) OB domain CPY64_03805 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_03805 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_03815 PF03480 Bacterial extracellular solute-binding protein, family 7 CPY64_03820 PF00330 Aconitase family (aconitate hydratase) CPY64_03820 PF06434 Aconitate hydratase 2 N-terminus CPY64_03820 PF11791 Aconitate B N-terminal domain CPY64_03835 PF00285 Citrate synthase, C-terminal domain CPY64_03845 PF06506 Propionate catabolism activator CPY64_03845 PF02954 Bacterial regulatory protein, Fis family CPY64_03845 PF00158 Sigma-54 interaction domain CPY64_03850 PF07690 Major Facilitator Superfamily CPY64_03860 PF00056 lactate/malate dehydrogenase, NAD binding domain CPY64_03860 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CPY64_03865 PF07702 UTRA domain CPY64_03865 PF00392 Bacterial regulatory proteins, gntR family CPY64_03870 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CPY64_03880 PF00890 FAD binding domain CPY64_03880 PF02910 Fumarate reductase flavoprotein C-term CPY64_03885 PF13085 2Fe-2S iron-sulfur cluster binding domain CPY64_03890 PF03937 Flavinator of succinate dehydrogenase CPY64_03895 PF00285 Citrate synthase, C-terminal domain CPY64_03900 PF00392 Bacterial regulatory proteins, gntR family CPY64_03900 PF07729 FCD domain CPY64_03905 PF02652 L-lactate permease CPY64_03910 PF00390 Malic enzyme, N-terminal domain CPY64_03910 PF01515 Phosphate acetyl/butaryl transferase CPY64_03910 PF03949 Malic enzyme, NAD binding domain CPY64_03920 PF16870 2-oxoglutarate dehydrogenase C-terminal CPY64_03920 PF02779 Transketolase, pyrimidine binding domain CPY64_03920 PF16078 2-oxoglutarate dehydrogenase N-terminus CPY64_03920 PF00676 Dehydrogenase E1 component CPY64_03925 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPY64_03925 PF02817 e3 binding domain CPY64_03925 PF00364 Biotin-requiring enzyme CPY64_03930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPY64_03930 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPY64_03935 PF03969 AFG1-like ATPase CPY64_03940 PF00579 tRNA synthetases class I (W and Y) CPY64_03945 PF00132 Bacterial transferase hexapeptide (six repeats) CPY64_03955 PF16921 Tex protein YqgF-like domain CPY64_03955 PF17674 HHH domain CPY64_03955 PF09371 Tex-like protein N-terminal domain CPY64_03955 PF00575 S1 RNA binding domain CPY64_03960 PF13307 Helicase C-terminal domain CPY64_03960 PF04851 Type III restriction enzyme, res subunit CPY64_03970 PF01638 HxlR-like helix-turn-helix CPY64_03980 PF06249 Ethanolamine utilisation protein EutQ CPY64_03985 PF01266 FAD dependent oxidoreductase CPY64_03985 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CPY64_04000 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_04005 PF00440 Bacterial regulatory proteins, tetR family CPY64_04005 PF08361 MAATS-type transcriptional repressor, C-terminal region CPY64_04010 PF13525 Outer membrane lipoprotein CPY64_04015 PF01479 S4 domain CPY64_04015 PF00849 RNA pseudouridylate synthase CPY64_04025 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CPY64_04030 PF00106 short chain dehydrogenase CPY64_04035 PF07879 PHB/PHA accumulation regulator DNA-binding domain CPY64_04035 PF05233 PHB accumulation regulatory domain CPY64_04065 PF04079 Segregation and condensation complex subunit ScpB CPY64_04070 PF00849 RNA pseudouridylate synthase CPY64_04070 PF01479 S4 domain CPY64_04075 PF17384 RimP C-terminal SH3 domain CPY64_04075 PF02576 RimP N-terminal domain CPY64_04080 PF13184 NusA-like KH domain CPY64_04080 PF08529 NusA N-terminal domain CPY64_04085 PF04760 Translation initiation factor IF-2, N-terminal region CPY64_04085 PF08364 Bacterial translation initiation factor IF-2 associated region CPY64_04085 PF11987 Translation-initiation factor 2 CPY64_04085 PF00009 Elongation factor Tu GTP binding domain CPY64_04090 PF02033 Ribosome-binding factor A CPY64_04095 PF01509 TruB family pseudouridylate synthase (N terminal domain) CPY64_04095 PF16198 tRNA pseudouridylate synthase B C-terminal domain CPY64_04105 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPY64_04115 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_04120 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_04125 PF00497 Bacterial extracellular solute-binding proteins, family 3 CPY64_04130 PF03641 Possible lysine decarboxylase CPY64_04135 PF01612 3'-5' exonuclease CPY64_04135 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CPY64_04135 PF00476 DNA polymerase family A CPY64_04135 PF01367 5'-3' exonuclease, C-terminal SAM fold CPY64_04140 PF02690 Na+/Pi-cotransporter CPY64_04150 PF00456 Transketolase, thiamine diphosphate binding domain CPY64_04150 PF17831 Pyruvate dehydrogenase E1 component middle domain CPY64_04160 PF00583 Acetyltransferase (GNAT) family CPY64_04165 PF01435 Peptidase family M48 CPY64_04175 PF00581 Rhodanese-like domain CPY64_04180 PF02609 Exonuclease VII small subunit CPY64_04185 PF00348 Polyprenyl synthetase CPY64_04190 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CPY64_04190 PF02779 Transketolase, pyrimidine binding domain CPY64_04190 PF02780 Transketolase, C-terminal domain CPY64_04195 PF02649 Type I GTP cyclohydrolase folE2 CPY64_04200 PF01250 Ribosomal protein S6 CPY64_04210 PF01084 Ribosomal protein S18 CPY64_04215 PF03948 Ribosomal protein L9, C-terminal domain CPY64_04215 PF01281 Ribosomal protein L9, N-terminal domain CPY64_04220 PF03796 DnaB-like helicase C terminal domain CPY64_04220 PF00772 DnaB-like helicase N terminal domain CPY64_04225 PF13593 SBF-like CPA transporter family (DUF4137) CPY64_04230 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CPY64_04235 PF02562 PhoH-like protein CPY64_04235 PF13638 PIN domain CPY64_04240 PF00578 AhpC/TSA family CPY64_04245 PF04430 Protein of unknown function (DUF498/DUF598) CPY64_04250 PF00155 Aminotransferase class I and II CPY64_04255 PF03447 Homoserine dehydrogenase, NAD binding domain CPY64_04255 PF00742 Homoserine dehydrogenase CPY64_04255 PF01842 ACT domain CPY64_04260 PF00291 Pyridoxal-phosphate dependent enzyme CPY64_04260 PF14821 Threonine synthase N terminus CPY64_04265 PF13302 Acetyltransferase (GNAT) domain CPY64_04270 PF01593 Flavin containing amine oxidoreductase CPY64_04285 PF00842 Alanine racemase, C-terminal domain CPY64_04285 PF01168 Alanine racemase, N-terminal domain CPY64_04295 PF18073 Rubredoxin metal binding domain CPY64_04310 PF13416 Bacterial extracellular solute-binding protein CPY64_04315 PF08402 TOBE domain CPY64_04315 PF00005 ABC transporter CPY64_04320 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_04325 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_04330 PF03960 ArsC family CPY64_04335 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CPY64_04340 PF01895 PhoU domain CPY64_04345 PF00563 EAL domain CPY64_04345 PF00990 Diguanylate cyclase, GGDEF domain CPY64_04345 PF01590 GAF domain CPY64_04345 PF00360 Phytochrome region CPY64_04350 PF00916 Sulfate permease family CPY64_04350 PF01740 STAS domain CPY64_04355 PF04362 Bacterial Fe(2+) trafficking CPY64_04360 PF00583 Acetyltransferase (GNAT) family CPY64_04360 PF00696 Amino acid kinase family CPY64_04365 PF00270 DEAD/DEAH box helicase CPY64_04365 PF11898 Domain of unknown function (DUF3418) CPY64_04365 PF04408 Helicase associated domain (HA2) CPY64_04365 PF00271 Helicase conserved C-terminal domain CPY64_04365 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CPY64_04370 PF01336 OB-fold nucleic acid binding domain CPY64_04370 PF14579 Helix-hairpin-helix motif CPY64_04370 PF02811 PHP domain CPY64_04370 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CPY64_04370 PF07733 Bacterial DNA polymerase III alpha NTPase domain CPY64_04375 PF13439 Glycosyltransferase Family 4 CPY64_04375 PF00534 Glycosyl transferases group 1 CPY64_04380 PF01522 Polysaccharide deacetylase CPY64_04385 PF00535 Glycosyl transferase family 2 CPY64_04395 PF00534 Glycosyl transferases group 1 CPY64_04395 PF13439 Glycosyltransferase Family 4 CPY64_04405 PF03692 Putative zinc- or iron-chelating domain CPY64_04420 PF00005 ABC transporter CPY64_04420 PF00664 ABC transporter transmembrane region CPY64_04435 PF10150 Ribonuclease E/G family CPY64_04435 PF00575 S1 RNA binding domain CPY64_04475 PF07729 FCD domain CPY64_04475 PF00392 Bacterial regulatory proteins, gntR family CPY64_04480 PF01565 FAD binding domain CPY64_04480 PF02913 FAD linked oxidases, C-terminal domain CPY64_04485 PF01565 FAD binding domain CPY64_04490 PF02754 Cysteine-rich domain CPY64_04490 PF13183 4Fe-4S dicluster domain CPY64_04505 PF12833 Helix-turn-helix domain CPY64_04505 PF14525 AraC-binding-like domain CPY64_04510 PF00171 Aldehyde dehydrogenase family CPY64_04515 PF00171 Aldehyde dehydrogenase family CPY64_04520 PF01266 FAD dependent oxidoreductase CPY64_04535 PF12833 Helix-turn-helix domain CPY64_04535 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CPY64_04570 PF02690 Na+/Pi-cotransporter CPY64_04585 PF13609 Gram-negative porin CPY64_04595 PF00892 EamA-like transporter family CPY64_04605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_04605 PF03466 LysR substrate binding domain CPY64_04610 PF03601 Conserved hypothetical protein 698 CPY64_04615 PF04247 Invasion gene expression up-regulator, SirB CPY64_04620 PF00753 Metallo-beta-lactamase superfamily CPY64_04630 PF04143 Sulphur transport CPY64_04640 PF13411 MerR HTH family regulatory protein CPY64_04645 PF00403 Heavy-metal-associated domain CPY64_04650 PF00916 Sulfate permease family CPY64_04650 PF01740 STAS domain CPY64_04655 PF03781 Sulfatase-modifying factor enzyme 1 CPY64_04660 PF00884 Sulfatase CPY64_04665 PF05154 TM2 domain CPY64_04670 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CPY64_04670 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CPY64_04675 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CPY64_04675 PF01266 FAD dependent oxidoreductase CPY64_04680 PF00877 NlpC/P60 family CPY64_04685 PF05247 Flagellar transcriptional activator (FlhD) CPY64_04690 PF05280 Flagellar transcriptional activator (FlhC) CPY64_04695 PF01618 MotA/TolQ/ExbB proton channel family CPY64_04700 PF00691 OmpA family CPY64_04700 PF13677 Membrane MotB of proton-channel complex MotA/MotB CPY64_04705 PF01584 CheW-like domain CPY64_04705 PF09078 CheY binding CPY64_04705 PF02895 Signal transducing histidine kinase, homodimeric domain CPY64_04705 PF01627 Hpt domain CPY64_04705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_04710 PF01584 CheW-like domain CPY64_04715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPY64_04715 PF00672 HAMP domain CPY64_04715 PF02203 Tar ligand binding domain homologue CPY64_04720 PF01739 CheR methyltransferase, SAM binding domain CPY64_04720 PF03705 CheR methyltransferase, all-alpha domain CPY64_04725 PF00072 Response regulator receiver domain CPY64_04725 PF01339 CheB methylesterase CPY64_04730 PF00072 Response regulator receiver domain CPY64_04735 PF04344 Chemotaxis phosphatase, CheZ CPY64_04740 PF01312 FlhB HrpN YscU SpaS Family CPY64_04745 PF00771 FHIPEP family CPY64_04750 PF00448 SRP54-type protein, GTPase domain CPY64_04755 PF07804 HipA-like C-terminal domain CPY64_04755 PF13657 HipA N-terminal domain CPY64_04770 PF04316 Anti-sigma-28 factor, FlgM CPY64_04780 PF00460 Flagella basal body rod protein CPY64_04785 PF00460 Flagella basal body rod protein CPY64_04785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CPY64_04790 PF13860 FlgD Ig-like domain CPY64_04790 PF13861 FlgD Tudor-like domain CPY64_04790 PF03963 Flagellar hook capping protein - N-terminal region CPY64_04795 PF00460 Flagella basal body rod protein CPY64_04795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CPY64_04795 PF07559 Flagellar basal body protein FlaE CPY64_04800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CPY64_04800 PF00460 Flagella basal body rod protein CPY64_04805 PF00460 Flagella basal body rod protein CPY64_04805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CPY64_04810 PF02107 Flagellar L-ring protein CPY64_04815 PF02119 Flagellar P-ring protein CPY64_04820 PF10135 Rod binding protein CPY64_04820 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CPY64_04825 PF00460 Flagella basal body rod protein CPY64_04825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CPY64_04830 PF00669 Bacterial flagellin N-terminal helical region CPY64_04835 PF00672 HAMP domain CPY64_04835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPY64_04835 PF02203 Tar ligand binding domain homologue CPY64_04845 PF02203 Tar ligand binding domain homologue CPY64_04845 PF00672 HAMP domain CPY64_04845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPY64_04855 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CPY64_04855 PF14579 Helix-hairpin-helix motif CPY64_04855 PF02811 PHP domain CPY64_04855 PF00929 Exonuclease CPY64_04855 PF07733 Bacterial DNA polymerase III alpha NTPase domain CPY64_04860 PF01311 Bacterial export proteins, family 1 CPY64_04865 PF01313 Bacterial export proteins, family 3 CPY64_04870 PF00813 FliP family CPY64_04875 PF04347 Flagellar biosynthesis protein, FliO CPY64_04880 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CPY64_04880 PF16973 Flagellar motor switch protein FliN N-terminal CPY64_04885 PF02154 Flagellar motor switch protein FliM CPY64_04885 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CPY64_04890 PF03748 Flagellar basal body-associated protein FliL CPY64_04905 PF18269 T3SS EscN ATPase C-terminal domain CPY64_04905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPY64_04915 PF14842 FliG N-terminal domain CPY64_04915 PF14841 FliG middle domain CPY64_04915 PF01706 FliG C-terminal domain CPY64_04920 PF08345 Flagellar M-ring protein C-terminal CPY64_04920 PF01514 Secretory protein of YscJ/FliF family CPY64_04925 PF02049 Flagellar hook-basal body complex protein FliE CPY64_04930 PF01312 FlhB HrpN YscU SpaS Family CPY64_04945 PF02561 Flagellar protein FliS CPY64_04950 PF07196 Flagellin hook IN motif CPY64_04950 PF02465 Flagellar hook-associated protein 2 N-terminus CPY64_04950 PF07195 Flagellar hook-associated protein 2 C-terminus CPY64_04955 PF03646 FlaG protein CPY64_04960 PF04542 Sigma-70 region 2 CPY64_04960 PF04545 Sigma-70, region 4 CPY64_04960 PF04539 Sigma-70 region 3 CPY64_04965 PF00669 Bacterial flagellin N-terminal helical region CPY64_04965 PF08884 Flagellin D3 domain CPY64_04965 PF00700 Bacterial flagellin C-terminal helical region CPY64_04985 PF00589 Phage integrase family CPY64_04995 PF00700 Bacterial flagellin C-terminal helical region CPY64_04995 PF08884 Flagellin D3 domain CPY64_04995 PF00669 Bacterial flagellin N-terminal helical region CPY64_05050 PF00005 ABC transporter CPY64_05060 PF03781 Sulfatase-modifying factor enzyme 1 CPY64_05080 PF04286 Protein of unknown function (DUF445) CPY64_05085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPY64_05085 PF08447 PAS fold CPY64_05090 PF08447 PAS fold CPY64_05090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPY64_05100 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CPY64_05100 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CPY64_05105 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_05140 PF02899 Phage integrase, N-terminal SAM-like domain CPY64_05140 PF00589 Phage integrase family CPY64_05200 PF05707 Zonular occludens toxin (Zot) CPY64_05205 PF03958 Bacterial type II/III secretion system short domain CPY64_05205 PF00263 Bacterial type II and III secretion system protein CPY64_05215 PF00149 Calcineurin-like phosphoesterase CPY64_05230 PF03466 LysR substrate binding domain CPY64_05230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_05235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CPY64_05240 PF00873 AcrB/AcrD/AcrF family CPY64_05245 PF02321 Outer membrane efflux protein CPY64_05250 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CPY64_05255 PF00005 ABC transporter CPY64_05260 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_05270 PF03466 LysR substrate binding domain CPY64_05270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_05275 PF08274 PhnA Zinc-Ribbon CPY64_05275 PF03831 PhnA domain CPY64_05285 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_05315 PF13614 AAA domain CPY64_05320 PF00593 TonB dependent receptor CPY64_05320 PF07715 TonB-dependent Receptor Plug Domain CPY64_05320 PF07660 Secretin and TonB N terminus short domain CPY64_05325 PF00324 Amino acid permease CPY64_05345 PF03466 LysR substrate binding domain CPY64_05345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_05350 PF07007 Lysozyme inhibitor LprI CPY64_05355 PF00230 Major intrinsic protein CPY64_05390 PF10518 TAT (twin-arginine translocation) pathway signal sequence CPY64_05390 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding CPY64_05390 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPY64_05415 PF00313 'Cold-shock' DNA-binding domain CPY64_05420 PF00512 His Kinase A (phospho-acceptor) domain CPY64_05420 PF08521 Two-component sensor kinase N-terminal CPY64_05420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_05425 PF00072 Response regulator receiver domain CPY64_05425 PF00486 Transcriptional regulatory protein, C terminal CPY64_05430 PF00115 Cytochrome C and Quinol oxidase polypeptide I CPY64_05440 PF00034 Cytochrome c CPY64_05445 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPY64_05455 PF02371 Transposase IS116/IS110/IS902 family CPY64_05455 PF01548 Transposase CPY64_05490 PF01914 MarC family integral membrane protein CPY64_05500 PF00999 Sodium/hydrogen exchanger family CPY64_05510 PF00529 HlyD membrane-fusion protein of T1SS CPY64_05510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CPY64_05515 PF12805 FUSC-like inner membrane protein yccS CPY64_05520 PF00860 Permease family CPY64_05540 PF02630 SCO1/SenC CPY64_05550 PF01645 Conserved region in glutamate synthase CPY64_05560 PF12802 MarR family CPY64_05565 PF02464 Competence-damaged protein CPY64_05565 PF00994 Probable molybdopterin binding domain CPY64_05570 PF00330 Aconitase family (aconitate hydratase) CPY64_05570 PF00694 Aconitase C-terminal domain CPY64_05580 PF04303 PrpF protein CPY64_05585 PF12833 Helix-turn-helix domain CPY64_05595 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CPY64_05595 PF00355 Rieske [2Fe-2S] domain CPY64_05600 PF00866 Ring hydroxylating beta subunit CPY64_05620 PF12795 Mechanosensitive ion channel porin domain CPY64_05620 PF12794 Mechanosensitive ion channel inner membrane domain 1 CPY64_05620 PF00924 Mechanosensitive ion channel CPY64_05625 PF12794 Mechanosensitive ion channel inner membrane domain 1 CPY64_05625 PF12795 Mechanosensitive ion channel porin domain CPY64_05625 PF00924 Mechanosensitive ion channel CPY64_05630 PF00083 Sugar (and other) transporter CPY64_05630 PF08946 Osmosensory transporter coiled coil CPY64_05645 PF01381 Helix-turn-helix CPY64_05650 PF00072 Response regulator receiver domain CPY64_05655 PF00512 His Kinase A (phospho-acceptor) domain CPY64_05655 PF01627 Hpt domain CPY64_05655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_05655 PF00072 Response regulator receiver domain CPY64_05660 PF03448 MgtE intracellular N domain CPY64_05660 PF01769 Divalent cation transporter CPY64_05660 PF00571 CBS domain CPY64_05670 PF06965 Na+/H+ antiporter 1 CPY64_05675 PF02580 D-Tyr-tRNA(Tyr) deacylase CPY64_05680 PF00893 Small Multidrug Resistance protein CPY64_05690 PF00583 Acetyltransferase (GNAT) family CPY64_05700 PF01435 Peptidase family M48 CPY64_05705 PF07690 Major Facilitator Superfamily CPY64_05775 PF07694 5TMR of 5TMR-LYT CPY64_05775 PF00990 Diguanylate cyclase, GGDEF domain CPY64_05790 PF01037 Lrp/AsnC ligand binding domain CPY64_05790 PF13404 AsnC-type helix-turn-helix domain CPY64_05795 PF01053 Cys/Met metabolism PLP-dependent enzyme CPY64_05805 PF00293 NUDIX domain CPY64_05810 PF04304 Protein of unknown function (DUF454) CPY64_05820 PF00764 Arginosuccinate synthase CPY64_05825 PF00149 Calcineurin-like phosphoesterase CPY64_05830 PF03459 TOBE domain CPY64_05830 PF00005 ABC transporter CPY64_05835 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_05845 PF01547 Bacterial extracellular solute-binding protein CPY64_05850 PF00356 Bacterial regulatory proteins, lacI family CPY64_05860 PF03814 Potassium-transporting ATPase A subunit CPY64_05865 PF02669 K+-transporting ATPase, c chain CPY64_05875 PF13493 Domain of unknown function (DUF4118) CPY64_05875 PF13492 GAF domain CPY64_05875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_05875 PF02702 Osmosensitive K+ channel His kinase sensor domain CPY64_05875 PF00512 His Kinase A (phospho-acceptor) domain CPY64_05880 PF00072 Response regulator receiver domain CPY64_05880 PF00486 Transcriptional regulatory protein, C terminal CPY64_05885 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CPY64_05885 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CPY64_05895 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CPY64_05895 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPY64_05900 PF01649 Ribosomal protein S20 CPY64_05905 PF03023 Lipid II flippase MurJ CPY64_05910 PF00106 short chain dehydrogenase CPY64_05915 PF05191 Adenylate kinase, active site lid CPY64_05920 PF02348 Cytidylyltransferase CPY64_05925 PF03966 Trm112p-like protein CPY64_05930 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CPY64_05935 PF02472 Biopolymer transport protein ExbD/TolR CPY64_05940 PF01618 MotA/TolQ/ExbB proton channel family CPY64_05945 PF13742 OB-fold nucleic acid binding domain CPY64_05945 PF02601 Exonuclease VII, large subunit CPY64_05950 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CPY64_05950 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CPY64_05955 PF00210 Ferritin-like domain CPY64_05960 PF02803 Thiolase, C-terminal domain CPY64_05960 PF00108 Thiolase, N-terminal domain CPY64_05970 PF00313 'Cold-shock' DNA-binding domain CPY64_05975 PF02617 ATP-dependent Clp protease adaptor protein ClpS CPY64_05980 PF00004 ATPase family associated with various cellular activities (AAA) CPY64_05980 PF07724 AAA domain (Cdc48 subfamily) CPY64_05980 PF17871 AAA lid domain CPY64_05980 PF02861 Clp amino terminal domain, pathogenicity island component CPY64_05980 PF10431 C-terminal, D2-small domain, of ClpB protein CPY64_05985 PF04403 Paraquat-inducible protein A CPY64_05990 PF02470 MlaD protein CPY64_06000 PF00171 Aldehyde dehydrogenase family CPY64_06000 PF01619 Proline dehydrogenase CPY64_06000 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CPY64_06000 PF14850 DNA-binding domain of Proline dehydrogenase CPY64_06005 PF13458 Periplasmic binding protein CPY64_06010 PF02653 Branched-chain amino acid transport system / permease component CPY64_06015 PF02653 Branched-chain amino acid transport system / permease component CPY64_06015 PF11862 Domain of unknown function (DUF3382) CPY64_06020 PF00005 ABC transporter CPY64_06020 PF12399 Branched-chain amino acid ATP-binding cassette transporter CPY64_06025 PF00005 ABC transporter CPY64_06040 PF01965 DJ-1/PfpI family CPY64_06045 PF05971 RNA methyltransferase CPY64_06050 PF00692 dUTPase CPY64_06055 PF02441 Flavoprotein CPY64_06055 PF04127 DNA / pantothenate metabolism flavoprotein CPY64_06060 PF01252 Signal peptidase (SPase) II CPY64_06065 PF00133 tRNA synthetases class I (I, L, M and V) CPY64_06065 PF08264 Anticodon-binding domain of tRNA CPY64_06065 PF06827 Zinc finger found in FPG and IleRS CPY64_06070 PF06574 FAD synthetase CPY64_06070 PF01687 Riboflavin kinase CPY64_06075 PF00551 Formyl transferase CPY64_06080 PF01029 NusB family CPY64_06080 PF01189 16S rRNA methyltransferase RsmB/F CPY64_06090 PF13361 UvrD-like helicase C-terminal domain CPY64_06090 PF00580 UvrD/REP helicase N-terminal domain CPY64_06115 PF00440 Bacterial regulatory proteins, tetR family CPY64_06115 PF02909 Tetracyclin repressor-like, C-terminal domain CPY64_06120 PF13533 Biotin-lipoyl like CPY64_06135 PF07690 Major Facilitator Superfamily CPY64_06145 PF12848 ABC transporter CPY64_06145 PF00005 ABC transporter CPY64_06150 PF05175 Methyltransferase small domain CPY64_06155 PF07687 Peptidase dimerisation domain CPY64_06155 PF01546 Peptidase family M20/M25/M40 CPY64_06160 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CPY64_06160 PF14602 Hexapeptide repeat of succinyl-transferase CPY64_06160 PF00132 Bacterial transferase hexapeptide (six repeats) CPY64_06170 PF12833 Helix-turn-helix domain CPY64_06170 PF02311 AraC-like ligand binding domain CPY64_06180 PF02080 TrkA-C domain CPY64_06180 PF03600 Citrate transporter CPY64_06225 PF00376 MerR family regulatory protein CPY64_06225 PF09278 MerR, DNA binding CPY64_06230 PF07690 Major Facilitator Superfamily CPY64_06250 PF02515 CoA-transferase family III CPY64_06255 PF05697 Bacterial trigger factor protein (TF) CPY64_06255 PF05698 Bacterial trigger factor protein (TF) C-terminus CPY64_06255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CPY64_06260 PF00574 Clp protease CPY64_06265 PF10431 C-terminal, D2-small domain, of ClpB protein CPY64_06265 PF07724 AAA domain (Cdc48 subfamily) CPY64_06265 PF06689 ClpX C4-type zinc finger CPY64_06270 PF00004 ATPase family associated with various cellular activities (AAA) CPY64_06270 PF02190 ATP-dependent protease La (LON) substrate-binding domain CPY64_06270 PF05362 Lon protease (S16) C-terminal proteolytic domain CPY64_06275 PF01726 LexA DNA binding domain CPY64_06275 PF00717 Peptidase S24-like CPY64_06280 PF13302 Acetyltransferase (GNAT) domain CPY64_06285 PF00155 Aminotransferase class I and II CPY64_06290 PF02151 UvrB/uvrC motif CPY64_06290 PF12344 Ultra-violet resistance protein B CPY64_06290 PF17757 UvrB interaction domain CPY64_06290 PF00271 Helicase conserved C-terminal domain CPY64_06290 PF04851 Type III restriction enzyme, res subunit CPY64_06295 PF01451 Low molecular weight phosphotyrosine protein phosphatase CPY64_06300 PF02082 Transcriptional regulator CPY64_06305 PF00266 Aminotransferase class-V CPY64_06310 PF01592 NifU-like N terminal domain CPY64_06315 PF01521 Iron-sulphur cluster biosynthesis CPY64_06320 PF02142 MGS-like domain CPY64_06325 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_06330 PF00152 tRNA synthetases class II (D, K and N) CPY64_06330 PF01336 OB-fold nucleic acid binding domain CPY64_06335 PF00106 short chain dehydrogenase CPY64_06345 PF00672 HAMP domain CPY64_06345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPY64_06345 PF02203 Tar ligand binding domain homologue CPY64_06350 PF01176 Translation initiation factor 1A / IF-1 CPY64_06355 PF00892 EamA-like transporter family CPY64_06360 PF01758 Sodium Bile acid symporter family CPY64_06370 PF01368 DHH family CPY64_06370 PF02272 DHHA1 domain CPY64_06370 PF17768 RecJ OB domain CPY64_06380 PF02687 FtsX-like permease family CPY64_06380 PF12704 MacB-like periplasmic core domain CPY64_06385 PF00005 ABC transporter CPY64_06390 PF01026 TatD related DNase CPY64_06395 PF03772 Competence protein CPY64_06395 PF00753 Metallo-beta-lactamase superfamily CPY64_06400 PF12697 Alpha/beta hydrolase family CPY64_06405 PF02811 PHP domain CPY64_06410 PF03449 Transcription elongation factor, N-terminal CPY64_06410 PF01272 Transcription elongation factor, GreA/GreB, C-term CPY64_06415 PF02769 AIR synthase related protein, C-terminal domain CPY64_06415 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CPY64_06415 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CPY64_06420 PF00478 IMP dehydrogenase / GMP reductase domain CPY64_06420 PF00571 CBS domain CPY64_06440 PF02540 NAD synthase CPY64_06440 PF00958 GMP synthase C terminal domain CPY64_06440 PF00117 Glutamine amidotransferase class-I CPY64_06445 PF13289 SIR2-like domain CPY64_06455 PF12728 Helix-turn-helix domain CPY64_06470 PF00893 Small Multidrug Resistance protein CPY64_06480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_06480 PF03466 LysR substrate binding domain CPY64_06485 PF01717 Cobalamin-independent synthase, Catalytic domain CPY64_06485 PF08267 Cobalamin-independent synthase, N-terminal domain CPY64_06495 PF01717 Cobalamin-independent synthase, Catalytic domain CPY64_06505 PF18158 Adaptive response protein AidB N-terminal domain CPY64_06505 PF02770 Acyl-CoA dehydrogenase, middle domain CPY64_06505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CPY64_06510 PF02492 CobW/HypB/UreG, nucleotide-binding domain CPY64_06510 PF07683 Cobalamin synthesis protein cobW C-terminal domain CPY64_06515 PF02649 Type I GTP cyclohydrolase folE2 CPY64_06520 PF01809 Putative membrane protein insertion efficiency factor CPY64_06530 PF01979 Amidohydrolase family CPY64_06535 PF01475 Ferric uptake regulator family CPY64_06540 PF01502 Phosphoribosyl-AMP cyclohydrolase CPY64_06545 PF01970 Tripartite tricarboxylate transporter TctA family CPY64_06555 PF13426 PAS domain CPY64_06555 PF00072 Response regulator receiver domain CPY64_06555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_06555 PF00512 His Kinase A (phospho-acceptor) domain CPY64_06555 PF08448 PAS fold CPY64_06560 PF00072 Response regulator receiver domain CPY64_06560 PF00486 Transcriptional regulatory protein, C terminal CPY64_06565 PF12852 Cupin CPY64_06565 PF12833 Helix-turn-helix domain CPY64_06570 PF07690 Major Facilitator Superfamily CPY64_06575 PF08543 Phosphomethylpyrimidine kinase CPY64_06580 PF09297 NADH pyrophosphatase zinc ribbon domain CPY64_06580 PF00293 NUDIX domain CPY64_06585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_06585 PF03466 LysR substrate binding domain CPY64_06590 PF04632 Fusaric acid resistance protein family CPY64_06600 PF13533 Biotin-lipoyl like CPY64_06610 PF14552 Tautomerase enzyme CPY64_06615 PF00175 Oxidoreductase NAD-binding domain CPY64_06615 PF00042 Globin CPY64_06615 PF00970 Oxidoreductase FAD-binding domain CPY64_06620 PF00171 Aldehyde dehydrogenase family CPY64_06625 PF04341 Protein of unknown function, DUF485 CPY64_06630 PF00474 Sodium:solute symporter family CPY64_06640 PF03060 Nitronate monooxygenase CPY64_06645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_06645 PF03466 LysR substrate binding domain CPY64_06665 PF00440 Bacterial regulatory proteins, tetR family CPY64_06665 PF16859 Tetracyclin repressor-like, C-terminal domain CPY64_06670 PF03033 Glycosyltransferase family 28 N-terminal domain CPY64_06680 PF02798 Glutathione S-transferase, N-terminal domain CPY64_06685 PF03466 LysR substrate binding domain CPY64_06685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_06705 PF02798 Glutathione S-transferase, N-terminal domain CPY64_06710 PF00574 Clp protease CPY64_06740 PF00891 O-methyltransferase domain CPY64_06750 PF00899 ThiF family CPY64_06750 PF00581 Rhodanese-like domain CPY64_06755 PF14464 Prokaryotic homologs of the JAB domain CPY64_06760 PF02597 ThiS family CPY64_06765 PF02515 CoA-transferase family III CPY64_06770 PF13193 AMP-binding enzyme C-terminal domain CPY64_06770 PF00501 AMP-binding enzyme CPY64_06775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CPY64_06775 PF02770 Acyl-CoA dehydrogenase, middle domain CPY64_06775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CPY64_06795 PF01022 Bacterial regulatory protein, arsR family CPY64_06815 PF12833 Helix-turn-helix domain CPY64_06815 PF02311 AraC-like ligand binding domain CPY64_06820 PF00682 HMGL-like CPY64_06820 PF08502 LeuA allosteric (dimerisation) domain CPY64_06840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_06840 PF03466 LysR substrate binding domain CPY64_06845 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CPY64_06845 PF13378 Enolase C-terminal domain-like CPY64_06850 PF04444 Catechol dioxygenase N terminus CPY64_06850 PF00775 Dioxygenase CPY64_06855 PF01144 Coenzyme A transferase CPY64_06860 PF01144 Coenzyme A transferase CPY64_06865 PF12146 Serine aminopeptidase, S33 CPY64_06870 PF02426 Muconolactone delta-isomerase CPY64_06875 PF03594 Benzoate membrane transport protein CPY64_06880 PF01926 50S ribosome-binding GTPase CPY64_06885 PF01926 50S ribosome-binding GTPase CPY64_06900 PF00005 ABC transporter CPY64_06905 PF00850 Histone deacetylase domain CPY64_06910 PF00196 Bacterial regulatory proteins, luxR family CPY64_06910 PF00072 Response regulator receiver domain CPY64_06915 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CPY64_06915 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CPY64_06940 PF12802 MarR family CPY64_06945 PF01494 FAD binding domain CPY64_06950 PF07690 Major Facilitator Superfamily CPY64_06960 PF01168 Alanine racemase, N-terminal domain CPY64_06965 PF00392 Bacterial regulatory proteins, gntR family CPY64_06965 PF00155 Aminotransferase class I and II CPY64_06970 PF00892 EamA-like transporter family CPY64_06980 PF08774 VRR-NUC domain CPY64_06980 PF18081 Fanconi anemia-associated nuclease SAP domain CPY64_06990 PF01266 FAD dependent oxidoreductase CPY64_06995 PF00890 FAD binding domain CPY64_07000 PF02445 Quinolinate synthetase A protein CPY64_07005 PF00248 Aldo/keto reductase family CPY64_07020 PF00589 Phage integrase family CPY64_07020 PF13356 Arm DNA-binding domain CPY64_07045 PF04381 Putative exonuclease, RdgC CPY64_07055 PF00436 Single-strand binding protein family CPY64_07200 PF00149 Calcineurin-like phosphoesterase CPY64_07305 PF03466 LysR substrate binding domain CPY64_07305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_07310 PF03737 Aldolase/RraA CPY64_07315 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_07380 PF01965 DJ-1/PfpI family CPY64_07385 PF12706 Beta-lactamase superfamily domain CPY64_07390 PF00857 Isochorismatase family CPY64_07405 PF02586 SOS response associated peptidase (SRAP) CPY64_07420 PF03006 Haemolysin-III related CPY64_07425 PF07411 Domain of unknown function (DUF1508) CPY64_07450 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_07455 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_07460 PF00005 ABC transporter CPY64_07485 PF02830 V4R domain CPY64_07485 PF00158 Sigma-54 interaction domain CPY64_07485 PF06505 Activator of aromatic catabolism CPY64_07485 PF02954 Bacterial regulatory protein, Fis family CPY64_07490 PF06099 Phenol hydroxylase subunit CPY64_07495 PF02332 Methane/Phenol/Toluene Hydroxylase CPY64_07500 PF02406 MmoB/DmpM family CPY64_07505 PF04945 YHS domain CPY64_07505 PF02332 Methane/Phenol/Toluene Hydroxylase CPY64_07510 PF04663 Phenol hydroxylase conserved region CPY64_07515 PF00175 Oxidoreductase NAD-binding domain CPY64_07515 PF00970 Oxidoreductase FAD-binding domain CPY64_07515 PF00111 2Fe-2S iron-sulfur cluster binding domain CPY64_07520 PF03466 LysR substrate binding domain CPY64_07520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_07525 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CPY64_07525 PF00355 Rieske [2Fe-2S] domain CPY64_07530 PF00866 Ring hydroxylating beta subunit CPY64_07535 PF00970 Oxidoreductase FAD-binding domain CPY64_07535 PF00111 2Fe-2S iron-sulfur cluster binding domain CPY64_07535 PF00175 Oxidoreductase NAD-binding domain CPY64_07540 PF00106 short chain dehydrogenase CPY64_07545 PF07690 Major Facilitator Superfamily CPY64_07550 PF01810 LysE type translocator CPY64_07560 PF00356 Bacterial regulatory proteins, lacI family CPY64_07570 PF01979 Amidohydrolase family CPY64_07575 PF00860 Permease family CPY64_07595 PF01145 SPFH domain / Band 7 family CPY64_07595 PF16200 C-terminal region of band_7 CPY64_07600 PF01957 NfeD-like C-terminal, partner-binding CPY64_07605 PF13649 Methyltransferase domain CPY64_07615 PF03891 Domain of unknown function (DUF333) CPY64_07625 PF00294 pfkB family carbohydrate kinase CPY64_07640 PF02824 TGS domain CPY64_07640 PF03129 Anticodon binding domain CPY64_07640 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPY64_07640 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPY64_07645 PF00707 Translation initiation factor IF-3, C-terminal domain CPY64_07645 PF05198 Translation initiation factor IF-3, N-terminal domain CPY64_07650 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CPY64_07650 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CPY64_07660 PF00381 PTS HPr component phosphorylation site CPY64_07665 PF02896 PEP-utilising enzyme, TIM barrel domain CPY64_07665 PF05524 PEP-utilising enzyme, N-terminal CPY64_07665 PF00391 PEP-utilising enzyme, mobile domain CPY64_07690 PF01078 Magnesium chelatase, subunit ChlI CPY64_07690 PF13335 Magnesium chelatase, subunit ChlI C-terminal CPY64_07695 PF01632 Ribosomal protein L35 CPY64_07700 PF00453 Ribosomal protein L20 CPY64_07705 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CPY64_07705 PF01409 tRNA synthetases class II core domain (F) CPY64_07710 PF03484 tRNA synthetase B5 domain CPY64_07710 PF03147 Ferredoxin-fold anticodon binding domain CPY64_07710 PF03483 B3/4 domain CPY64_07710 PF01588 Putative tRNA binding domain CPY64_07710 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CPY64_07715 PF00216 Bacterial DNA-binding protein CPY64_07725 PF04305 Protein of unknown function (DUF455) CPY64_07740 PF00664 ABC transporter transmembrane region CPY64_07740 PF00005 ABC transporter CPY64_07745 PF02082 Transcriptional regulator CPY64_07750 PF01458 Uncharacterized protein family (UPF0051) CPY64_07755 PF00005 ABC transporter CPY64_07760 PF01458 Uncharacterized protein family (UPF0051) CPY64_07765 PF00266 Aminotransferase class-V CPY64_07770 PF01592 NifU-like N terminal domain CPY64_07775 PF01883 Iron-sulfur cluster assembly protein CPY64_07785 PF00795 Carbon-nitrogen hydrolase CPY64_07790 PF01546 Peptidase family M20/M25/M40 CPY64_07790 PF07687 Peptidase dimerisation domain CPY64_07795 PF07171 MlrC C-terminus CPY64_07795 PF07364 Metallopeptidase family M81 CPY64_07845 PF00291 Pyridoxal-phosphate dependent enzyme CPY64_07850 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPY64_07855 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPY64_07855 PF00034 Cytochrome c CPY64_07860 PF01266 FAD dependent oxidoreductase CPY64_07880 PF03781 Sulfatase-modifying factor enzyme 1 CPY64_07895 PF02386 Cation transport protein CPY64_07900 PF02254 TrkA-N domain CPY64_07900 PF02080 TrkA-C domain CPY64_07905 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CPY64_07915 PF09424 Yqey-like protein CPY64_07920 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CPY64_07920 PF14579 Helix-hairpin-helix motif CPY64_07920 PF02811 PHP domain CPY64_07920 PF07733 Bacterial DNA polymerase III alpha NTPase domain CPY64_07955 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_07960 PF03466 LysR substrate binding domain CPY64_07960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_07965 PF00768 D-alanyl-D-alanine carboxypeptidase CPY64_07975 PF01618 MotA/TolQ/ExbB proton channel family CPY64_07980 PF00691 OmpA family CPY64_07980 PF13677 Membrane MotB of proton-channel complex MotA/MotB CPY64_07995 PF00296 Luciferase-like monooxygenase CPY64_08000 PF00106 short chain dehydrogenase CPY64_08005 PF00677 Lumazine binding domain CPY64_08015 PF10415 Fumarase C C-terminus CPY64_08015 PF00206 Lyase CPY64_08020 PF00375 Sodium:dicarboxylate symporter family CPY64_08025 PF00512 His Kinase A (phospho-acceptor) domain CPY64_08025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_08025 PF02743 Cache domain CPY64_08030 PF00072 Response regulator receiver domain CPY64_08030 PF02954 Bacterial regulatory protein, Fis family CPY64_08030 PF00158 Sigma-54 interaction domain CPY64_08035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CPY64_08035 PF01568 Molydopterin dinucleotide binding domain CPY64_08035 PF00384 Molybdopterin oxidoreductase CPY64_08040 PF03916 Polysulphide reductase, NrfD CPY64_08045 PF13247 4Fe-4S dicluster domain CPY64_08050 PF07715 TonB-dependent Receptor Plug Domain CPY64_08050 PF00593 TonB dependent receptor CPY64_08060 PF03069 Acetamidase/Formamidase family CPY64_08065 PF01979 Amidohydrolase family CPY64_08070 PF00860 Permease family CPY64_08075 PF00011 Hsp20/alpha crystallin family CPY64_08090 PF07690 Major Facilitator Superfamily CPY64_08110 PF01494 FAD binding domain CPY64_08120 PF09297 NADH pyrophosphatase zinc ribbon domain CPY64_08120 PF00293 NUDIX domain CPY64_08120 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CPY64_08125 PF03755 YicC-like family, N-terminal region CPY64_08125 PF08340 Domain of unknown function (DUF1732) CPY64_08130 PF00149 Calcineurin-like phosphoesterase CPY64_08135 PF13175 AAA ATPase domain CPY64_08140 PF01138 3' exoribonuclease family, domain 1 CPY64_08140 PF03725 3' exoribonuclease family, domain 2 CPY64_08145 PF01725 Ham1 family CPY64_08150 PF04055 Radical SAM superfamily CPY64_08150 PF06969 HemN C-terminal domain CPY64_08160 PF13673 Acetyltransferase (GNAT) domain CPY64_08165 PF03466 LysR substrate binding domain CPY64_08165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_08175 PF00462 Glutaredoxin CPY64_08180 PF00005 ABC transporter CPY64_08180 PF08402 TOBE domain CPY64_08185 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_08190 PF13416 Bacterial extracellular solute-binding protein CPY64_08195 PF00970 Oxidoreductase FAD-binding domain CPY64_08195 PF00175 Oxidoreductase NAD-binding domain CPY64_08200 PF01042 Endoribonuclease L-PSP CPY64_08205 PF17191 RecG wedge domain CPY64_08205 PF00271 Helicase conserved C-terminal domain CPY64_08205 PF00270 DEAD/DEAH box helicase CPY64_08210 PF03466 LysR substrate binding domain CPY64_08210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_08215 PF00210 Ferritin-like domain CPY64_08220 PF13458 Periplasmic binding protein CPY64_08225 PF00005 ABC transporter CPY64_08225 PF17912 MalK OB fold domain CPY64_08230 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_08235 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_08240 PF13416 Bacterial extracellular solute-binding protein CPY64_08245 PF03807 NADP oxidoreductase coenzyme F420-dependent CPY64_08245 PF14748 Pyrroline-5-carboxylate reductase dimerisation CPY64_08250 PF13458 Periplasmic binding protein CPY64_08255 PF02653 Branched-chain amino acid transport system / permease component CPY64_08260 PF11862 Domain of unknown function (DUF3382) CPY64_08260 PF02653 Branched-chain amino acid transport system / permease component CPY64_08265 PF00005 ABC transporter CPY64_08265 PF12399 Branched-chain amino acid ATP-binding cassette transporter CPY64_08270 PF00005 ABC transporter CPY64_08275 PF00043 Glutathione S-transferase, C-terminal domain CPY64_08275 PF02798 Glutathione S-transferase, N-terminal domain CPY64_08280 PF00326 Prolyl oligopeptidase family CPY64_08285 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPY64_08285 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CPY64_08295 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CPY64_08295 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CPY64_08300 PF00206 Lyase CPY64_08300 PF10415 Fumarase C C-terminus CPY64_08305 PF07995 Glucose / Sorbosone dehydrogenase CPY64_08310 PF08241 Methyltransferase domain CPY64_08315 PF00582 Universal stress protein family CPY64_08320 PF00034 Cytochrome c CPY64_08325 PF02311 AraC-like ligand binding domain CPY64_08325 PF12833 Helix-turn-helix domain CPY64_08330 PF00596 Class II Aldolase and Adducin N-terminal domain CPY64_08340 PF00171 Aldehyde dehydrogenase family CPY64_08345 PF01494 FAD binding domain CPY64_08350 PF07690 Major Facilitator Superfamily CPY64_08360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_08360 PF03466 LysR substrate binding domain CPY64_08370 PF00403 Heavy-metal-associated domain CPY64_08375 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ CPY64_08390 PF03466 LysR substrate binding domain CPY64_08390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_08395 PF00589 Phage integrase family CPY64_08395 PF02899 Phage integrase, N-terminal SAM-like domain CPY64_08405 PF07731 Multicopper oxidase CPY64_08405 PF07732 Multicopper oxidase CPY64_08405 PF00394 Multicopper oxidase CPY64_08420 PF03976 Polyphosphate kinase 2 (PPK2) CPY64_08455 PF01292 Prokaryotic cytochrome b561 CPY64_08465 PF04264 YceI-like domain CPY64_08470 PF03960 ArsC family CPY64_08475 PF00043 Glutathione S-transferase, C-terminal domain CPY64_08475 PF02798 Glutathione S-transferase, N-terminal domain CPY64_08485 PF03358 NADPH-dependent FMN reductase CPY64_08495 PF01026 TatD related DNase CPY64_08500 PF09115 DNA polymerase III, delta subunit, C terminal CPY64_08510 PF02618 YceG-like family CPY64_08520 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CPY64_08520 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CPY64_08530 PF02770 Acyl-CoA dehydrogenase, middle domain CPY64_08530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CPY64_08530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CPY64_08535 PF03658 RnfH family Ubiquitin CPY64_08540 PF03364 Polyketide cyclase / dehydrase and lipid transport CPY64_08545 PF01668 SmpB protein CPY64_08550 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPY64_08560 PF02896 PEP-utilising enzyme, TIM barrel domain CPY64_08560 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CPY64_08560 PF00391 PEP-utilising enzyme, mobile domain CPY64_08565 PF03618 Kinase/pyrophosphorylase CPY64_08570 PF01425 Amidase CPY64_08575 PF00588 SpoU rRNA Methylase family CPY64_08575 PF08032 RNA 2'-O ribose methyltransferase substrate binding CPY64_08580 PF01351 Ribonuclease HII CPY64_08585 PF02684 Lipid-A-disaccharide synthetase CPY64_08590 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CPY64_08590 PF00132 Bacterial transferase hexapeptide (six repeats) CPY64_08595 PF07977 FabA-like domain CPY64_08600 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CPY64_08600 PF00132 Bacterial transferase hexapeptide (six repeats) CPY64_08605 PF03938 Outer membrane protein (OmpH-like) CPY64_08610 PF07244 Surface antigen variable number repeat CPY64_08610 PF01103 Surface antigen CPY64_08615 PF13180 PDZ domain CPY64_08615 PF17820 PDZ domain CPY64_08615 PF02163 Peptidase family M50 CPY64_08620 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CPY64_08620 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CPY64_08620 PF13288 DXP reductoisomerase C-terminal domain CPY64_08630 PF01255 Putative undecaprenyl diphosphate synthase CPY64_08635 PF01765 Ribosome recycling factor CPY64_08640 PF00696 Amino acid kinase family CPY64_08645 PF00889 Elongation factor TS CPY64_08650 PF00318 Ribosomal protein S2 CPY64_08655 PF00557 Metallopeptidase family M24 CPY64_08660 PF08335 GlnD PII-uridylyltransferase CPY64_08660 PF01966 HD domain CPY64_08660 PF01909 Nucleotidyltransferase domain CPY64_08665 PF01914 MarC family integral membrane protein CPY64_08675 PF00144 Beta-lactamase CPY64_08680 PF00156 Phosphoribosyl transferase domain CPY64_08685 PF02674 Colicin V production protein CPY64_08695 PF08245 Mur ligase middle domain CPY64_08695 PF02875 Mur ligase family, glutamate ligase domain CPY64_08700 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPY64_08700 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPY64_08705 PF00364 Biotin-requiring enzyme CPY64_08705 PF02817 e3 binding domain CPY64_08705 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPY64_08710 PF00456 Transketolase, thiamine diphosphate binding domain CPY64_08710 PF17831 Pyruvate dehydrogenase E1 component middle domain CPY64_08715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_08715 PF00989 PAS fold CPY64_08715 PF00512 His Kinase A (phospho-acceptor) domain CPY64_08720 PF00196 Bacterial regulatory proteins, luxR family CPY64_08720 PF00072 Response regulator receiver domain CPY64_08725 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CPY64_08725 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CPY64_08730 PF01432 Peptidase family M3 CPY64_08735 PF02630 SCO1/SenC CPY64_08745 PF01022 Bacterial regulatory protein, arsR family CPY64_08750 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPY64_08750 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPY64_08755 PF00376 MerR family regulatory protein CPY64_08755 PF09278 MerR, DNA binding CPY64_08760 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_08765 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CPY64_08770 PF03480 Bacterial extracellular solute-binding protein, family 7 CPY64_08775 PF01220 Dehydroquinase class II CPY64_08790 PF12697 Alpha/beta hydrolase family CPY64_08795 PF02515 CoA-transferase family III CPY64_08805 PF02803 Thiolase, C-terminal domain CPY64_08805 PF00108 Thiolase, N-terminal domain CPY64_08825 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CPY64_08830 PF02321 Outer membrane efflux protein CPY64_08835 PF00873 AcrB/AcrD/AcrF family CPY64_08840 PF00529 HlyD membrane-fusion protein of T1SS CPY64_08840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CPY64_08845 PF00005 ABC transporter CPY64_08870 PF00108 Thiolase, N-terminal domain CPY64_08870 PF02803 Thiolase, C-terminal domain CPY64_08885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_08885 PF03466 LysR substrate binding domain CPY64_08890 PF01276 Orn/Lys/Arg decarboxylase, major domain CPY64_08890 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CPY64_08890 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CPY64_08910 PF00625 Guanylate kinase CPY64_08915 PF01192 RNA polymerase Rpb6 CPY64_08920 PF13291 ACT domain CPY64_08920 PF02824 TGS domain CPY64_08920 PF04607 Region found in RelA / SpoT proteins CPY64_08930 PF03591 AzlC protein CPY64_08935 PF01551 Peptidase family M23 CPY64_08935 PF08525 Opacity-associated protein A N-terminal motif CPY64_08935 PF01476 LysM domain CPY64_08940 PF00639 PPIC-type PPIASE domain CPY64_08940 PF09312 SurA N-terminal domain CPY64_08945 PF03009 Glycerophosphoryl diester phosphodiesterase family CPY64_08950 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CPY64_08955 PF00849 RNA pseudouridylate synthase CPY64_08955 PF01479 S4 domain CPY64_08960 PF04345 Chorismate lyase CPY64_08965 PF07690 Major Facilitator Superfamily CPY64_08970 PF00248 Aldo/keto reductase family CPY64_08975 PF00543 Nitrogen regulatory protein P-II CPY64_08980 PF00924 Mechanosensitive ion channel CPY64_08985 PF14698 Argininosuccinate lyase C-terminal CPY64_08985 PF00206 Lyase CPY64_08995 PF01804 Penicillin amidase CPY64_09000 PF01266 FAD dependent oxidoreductase CPY64_09010 PF05958 tRNA (Uracil-5-)-methyltransferase CPY64_09015 PF01476 LysM domain CPY64_09015 PF01551 Peptidase family M23 CPY64_09025 PF01975 Survival protein SurE CPY64_09030 PF02660 Glycerol-3-phosphate acyltransferase CPY64_09035 PF00814 Glycoprotease family CPY64_09040 PF00860 Permease family CPY64_09045 PF00085 Thioredoxin CPY64_09060 PF01205 Uncharacterized protein family UPF0029 CPY64_09065 PF12848 ABC transporter CPY64_09065 PF00005 ABC transporter CPY64_09070 PF02016 LD-carboxypeptidase N-terminal domain CPY64_09070 PF17676 LD-carboxypeptidase C-terminal domain CPY64_09075 PF14437 MafB19-like deaminase CPY64_09080 PF00005 ABC transporter CPY64_09085 PF01061 ABC-2 type transporter CPY64_09095 PF04461 Protein of unknown function (DUF520) CPY64_09100 PF00501 AMP-binding enzyme CPY64_09100 PF13193 AMP-binding enzyme C-terminal domain CPY64_09105 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CPY64_09110 PF00958 GMP synthase C terminal domain CPY64_09110 PF02540 NAD synthase CPY64_09110 PF00117 Glutamine amidotransferase class-I CPY64_09115 PF12833 Helix-turn-helix domain CPY64_09120 PF13593 SBF-like CPA transporter family (DUF4137) CPY64_09125 PF08534 Redoxin CPY64_09130 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CPY64_09135 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_09145 PF01416 tRNA pseudouridine synthase CPY64_09155 PF02774 Semialdehyde dehydrogenase, dimerisation domain CPY64_09155 PF01118 Semialdehyde dehydrogenase, NAD binding domain CPY64_09160 PF00180 Isocitrate/isopropylmalate dehydrogenase CPY64_09165 PF00694 Aconitase C-terminal domain CPY64_09170 PF00330 Aconitase family (aconitate hydratase) CPY64_09175 PF00155 Aminotransferase class I and II CPY64_09175 PF00392 Bacterial regulatory proteins, gntR family CPY64_09180 PF02627 Carboxymuconolactone decarboxylase family CPY64_09190 PF00196 Bacterial regulatory proteins, luxR family CPY64_09190 PF00072 Response regulator receiver domain CPY64_09195 PF08448 PAS fold CPY64_09195 PF00512 His Kinase A (phospho-acceptor) domain CPY64_09195 PF13426 PAS domain CPY64_09195 PF00072 Response regulator receiver domain CPY64_09195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_09205 PF01264 Chorismate synthase CPY64_09210 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CPY64_09220 PF03631 Virulence factor BrkB CPY64_09230 PF01207 Dihydrouridine synthase (Dus) CPY64_09235 PF01636 Phosphotransferase enzyme family CPY64_09260 PF00437 Type II/IV secretion system protein CPY64_09265 PF13629 Pilus formation protein N terminal region CPY64_09265 PF04972 BON domain CPY64_09265 PF00263 Bacterial type II and III secretion system protein CPY64_09295 PF01557 Fumarylacetoacetate (FAA) hydrolase family CPY64_09300 PF00719 Inorganic pyrophosphatase CPY64_09310 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CPY64_09320 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CPY64_09320 PF03900 Porphobilinogen deaminase, C-terminal domain CPY64_09325 PF03741 Integral membrane protein TerC family CPY64_09330 PF02629 CoA binding domain CPY64_09330 PF00549 CoA-ligase CPY64_09335 PF00549 CoA-ligase CPY64_09335 PF08442 ATP-grasp domain CPY64_09345 PF01717 Cobalamin-independent synthase, Catalytic domain CPY64_09345 PF08267 Cobalamin-independent synthase, N-terminal domain CPY64_09350 PF03466 LysR substrate binding domain CPY64_09350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_09355 PF02631 RecX family CPY64_09360 PF00154 recA bacterial DNA recombination protein CPY64_09365 PF00486 Transcriptional regulatory protein, C terminal CPY64_09365 PF00072 Response regulator receiver domain CPY64_09370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_09370 PF00512 His Kinase A (phospho-acceptor) domain CPY64_09375 PF08946 Osmosensory transporter coiled coil CPY64_09375 PF00083 Sugar (and other) transporter CPY64_09380 PF04381 Putative exonuclease, RdgC CPY64_09390 PF00501 AMP-binding enzyme CPY64_09390 PF13193 AMP-binding enzyme C-terminal domain CPY64_09395 PF00378 Enoyl-CoA hydratase/isomerase CPY64_09400 PF04341 Protein of unknown function, DUF485 CPY64_09405 PF00474 Sodium:solute symporter family CPY64_09410 PF00171 Aldehyde dehydrogenase family CPY64_09415 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CPY64_09415 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CPY64_09430 PF00912 Transglycosylase CPY64_09430 PF00905 Penicillin binding protein transpeptidase domain CPY64_09435 PF07703 Alpha-2-macroglobulin bait region domain CPY64_09435 PF01835 MG2 domain CPY64_09435 PF00207 Alpha-2-macroglobulin family CPY64_09445 PF03060 Nitronate monooxygenase CPY64_09450 PF06969 HemN C-terminal domain CPY64_09450 PF04055 Radical SAM superfamily CPY64_09455 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CPY64_09455 PF13244 Domain of unknown function (DUF4040) CPY64_09455 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CPY64_09455 PF00361 Proton-conducting membrane transporter CPY64_09460 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CPY64_09465 PF00361 Proton-conducting membrane transporter CPY64_09475 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CPY64_09490 PF00083 Sugar (and other) transporter CPY64_09490 PF07690 Major Facilitator Superfamily CPY64_09500 PF00037 4Fe-4S binding domain CPY64_09500 PF11953 Domain of unknown function (DUF3470) CPY64_09515 PF02705 K+ potassium transporter CPY64_09520 PF00512 His Kinase A (phospho-acceptor) domain CPY64_09520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_09520 PF08521 Two-component sensor kinase N-terminal CPY64_09525 PF00486 Transcriptional regulatory protein, C terminal CPY64_09525 PF00072 Response regulator receiver domain CPY64_09530 PF02472 Biopolymer transport protein ExbD/TolR CPY64_09535 PF01618 MotA/TolQ/ExbB proton channel family CPY64_09545 PF12857 TOBE-like domain CPY64_09545 PF00005 ABC transporter CPY64_09550 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_09555 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_09575 PF00313 'Cold-shock' DNA-binding domain CPY64_09690 PF00574 Clp protease CPY64_09705 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CPY64_09790 PF01381 Helix-turn-helix CPY64_09840 PF04381 Putative exonuclease, RdgC CPY64_09885 PF00589 Phage integrase family CPY64_09895 PF00216 Bacterial DNA-binding protein CPY64_09900 PF10414 Sirohaem synthase dimerisation region CPY64_09900 PF14824 Sirohaem biosynthesis protein central CPY64_09900 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPY64_09905 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPY64_09920 PF17805 AsnC-like ligand binding domain CPY64_09925 PF17805 AsnC-like ligand binding domain CPY64_09930 PF06463 Molybdenum Cofactor Synthesis C CPY64_09930 PF04055 Radical SAM superfamily CPY64_09935 PF10414 Sirohaem synthase dimerisation region CPY64_09935 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPY64_09935 PF14824 Sirohaem biosynthesis protein central CPY64_09940 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPY64_09945 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPY64_09950 PF00392 Bacterial regulatory proteins, gntR family CPY64_09950 PF00155 Aminotransferase class I and II CPY64_09955 PF01053 Cys/Met metabolism PLP-dependent enzyme CPY64_09960 PF08032 RNA 2'-O ribose methyltransferase substrate binding CPY64_09960 PF00588 SpoU rRNA Methylase family CPY64_09965 PF00773 RNB domain CPY64_09965 PF00575 S1 RNA binding domain CPY64_09965 PF08206 Ribonuclease B OB domain CPY64_09965 PF08461 Ribonuclease R winged-helix domain CPY64_09965 PF17876 Cold shock domain CPY64_09980 PF00356 Bacterial regulatory proteins, lacI family CPY64_09990 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_09995 PF00005 ABC transporter CPY64_10010 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain CPY64_10010 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain CPY64_10015 PF17042 Nucleotide-binding C-terminal domain CPY64_10015 PF07005 Sugar-binding N-terminal domain CPY64_10030 PF08021 Siderophore-interacting FAD-binding domain CPY64_10030 PF04954 Siderophore-interacting protein CPY64_10050 PF06750 Bacterial Peptidase A24 N-terminal domain CPY64_10050 PF01478 Type IV leader peptidase family CPY64_10060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_10060 PF03466 LysR substrate binding domain CPY64_10065 PF00005 ABC transporter CPY64_10065 PF08402 TOBE domain CPY64_10070 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_10075 PF13419 Haloacid dehalogenase-like hydrolase CPY64_10085 PF01266 FAD dependent oxidoreductase CPY64_10100 PF01738 Dienelactone hydrolase family CPY64_10105 PF12843 Putative quorum-sensing-regulated virulence factor CPY64_10110 PF02798 Glutathione S-transferase, N-terminal domain CPY64_10115 PF05726 Pirin C-terminal cupin domain CPY64_10115 PF02678 Pirin CPY64_10125 PF00795 Carbon-nitrogen hydrolase CPY64_10130 PF07690 Major Facilitator Superfamily CPY64_10135 PF07690 Major Facilitator Superfamily CPY64_10140 PF02311 AraC-like ligand binding domain CPY64_10140 PF12833 Helix-turn-helix domain CPY64_10145 PF03594 Benzoate membrane transport protein CPY64_10155 PF03746 LamB/YcsF family CPY64_10160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_10160 PF03466 LysR substrate binding domain CPY64_10165 PF00111 2Fe-2S iron-sulfur cluster binding domain CPY64_10165 PF01799 [2Fe-2S] binding domain CPY64_10170 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CPY64_10170 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CPY64_10180 PF01979 Amidohydrolase family CPY64_10185 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family CPY64_10190 PF00072 Response regulator receiver domain CPY64_10190 PF00486 Transcriptional regulatory protein, C terminal CPY64_10195 PF00672 HAMP domain CPY64_10195 PF00512 His Kinase A (phospho-acceptor) domain CPY64_10195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_10200 PF04546 Sigma-70, non-essential region CPY64_10200 PF04542 Sigma-70 region 2 CPY64_10200 PF00140 Sigma-70 factor, region 1.2 CPY64_10200 PF04539 Sigma-70 region 3 CPY64_10200 PF04545 Sigma-70, region 4 CPY64_10200 PF03979 Sigma-70 factor, region 1.1 CPY64_10205 PF10410 DnaB-helicase binding domain of primase CPY64_10205 PF01807 CHC2 zinc finger CPY64_10205 PF08278 DNA primase DnaG DnaB-binding CPY64_10205 PF08275 DNA primase catalytic core, N-terminal domain CPY64_10210 PF01165 Ribosomal protein S21 CPY64_10215 PF00156 Phosphoribosyl transferase domain CPY64_10220 PF00709 Adenylosuccinate synthetase CPY64_10225 PF13393 Histidyl-tRNA synthetase CPY64_10230 PF01145 SPFH domain / Band 7 family CPY64_10235 PF12221 Bacterial membrane protein N terminal CPY64_10235 PF01145 SPFH domain / Band 7 family CPY64_10240 PF13167 GTP-binding GTPase N-terminal CPY64_10240 PF01926 50S ribosome-binding GTPase CPY64_10240 PF16360 GTP-binding GTPase Middle Region CPY64_10245 PF17209 Hfq protein CPY64_10250 PF00155 Aminotransferase class I and II CPY64_10255 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CPY64_10255 PF01926 50S ribosome-binding GTPase CPY64_10260 PF13360 PQQ-like domain CPY64_10265 PF09976 Tetratricopeptide repeat-like domain CPY64_10270 PF13393 Histidyl-tRNA synthetase CPY64_10270 PF03129 Anticodon binding domain CPY64_10275 PF04551 GcpE protein CPY64_10285 PF04055 Radical SAM superfamily CPY64_10290 PF00334 Nucleoside diphosphate kinase CPY64_10295 PF08264 Anticodon-binding domain of tRNA CPY64_10295 PF10458 Valyl tRNA synthetase tRNA binding arm CPY64_10295 PF00133 tRNA synthetases class I (I, L, M and V) CPY64_10300 PF01746 tRNA (Guanine-1)-methyltransferase CPY64_10305 PF01782 RimM N-terminal domain CPY64_10310 PF00886 Ribosomal protein S16 CPY64_10315 PF01206 Sulfurtransferase TusA CPY64_10320 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPY64_10320 PF01411 tRNA synthetases class II (A) CPY64_10320 PF02272 DHHA1 domain CPY64_10335 PF00576 HIUase/Transthyretin family CPY64_10365 PF13416 Bacterial extracellular solute-binding protein CPY64_10370 PF01266 FAD dependent oxidoreductase CPY64_10375 PF00970 Oxidoreductase FAD-binding domain CPY64_10375 PF00175 Oxidoreductase NAD-binding domain CPY64_10375 PF00111 2Fe-2S iron-sulfur cluster binding domain CPY64_10380 PF00521 DNA gyrase/topoisomerase IV, subunit A CPY64_10385 PF00986 DNA gyrase B subunit, carboxyl terminus CPY64_10385 PF01751 Toprim domain CPY64_10385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_10385 PF00204 DNA gyrase B CPY64_10390 PF00085 Thioredoxin CPY64_10395 PF07498 Rho termination factor, N-terminal domain CPY64_10395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPY64_10395 PF07497 Rho termination factor, RNA-binding domain CPY64_10400 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CPY64_10400 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CPY64_10415 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CPY64_10415 PF00355 Rieske [2Fe-2S] domain CPY64_10420 PF00005 ABC transporter CPY64_10420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPY64_10430 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_10435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPY64_10445 PF07729 FCD domain CPY64_10445 PF00392 Bacterial regulatory proteins, gntR family CPY64_10460 PF08335 GlnD PII-uridylyltransferase CPY64_10460 PF03710 Glutamate-ammonia ligase adenylyltransferase CPY64_10465 PF02677 Epoxyqueuosine reductase QueH CPY64_10470 PF00004 ATPase family associated with various cellular activities (AAA) CPY64_10470 PF02861 Clp amino terminal domain, pathogenicity island component CPY64_10470 PF17871 AAA lid domain CPY64_10470 PF07724 AAA domain (Cdc48 subfamily) CPY64_10470 PF10431 C-terminal, D2-small domain, of ClpB protein CPY64_10475 PF13545 Crp-like helix-turn-helix domain CPY64_10475 PF00027 Cyclic nucleotide-binding domain CPY64_10490 PF12801 4Fe-4S binding domain CPY64_10490 PF13746 4Fe-4S dicluster domain CPY64_10490 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CPY64_10495 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPY64_10495 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CPY64_10510 PF00115 Cytochrome C and Quinol oxidase polypeptide I CPY64_10520 PF00403 Heavy-metal-associated domain CPY64_10525 PF00463 Isocitrate lyase family CPY64_10530 PF14489 QueF-like protein CPY64_10530 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CPY64_10540 PF01066 CDP-alcohol phosphatidyltransferase CPY64_10545 PF02151 UvrB/uvrC motif CPY64_10545 PF01541 GIY-YIG catalytic domain CPY64_10545 PF08459 UvrC Helix-hairpin-helix N-terminal CPY64_10550 PF00933 Glycosyl hydrolase family 3 N terminal domain CPY64_10555 PF01648 4'-phosphopantetheinyl transferase superfamily CPY64_10565 PF03061 Thioesterase superfamily CPY64_10570 PF00378 Enoyl-CoA hydratase/isomerase CPY64_10575 PF00171 Aldehyde dehydrogenase family CPY64_10580 PF00111 2Fe-2S iron-sulfur cluster binding domain CPY64_10580 PF00175 Oxidoreductase NAD-binding domain CPY64_10580 PF00970 Oxidoreductase FAD-binding domain CPY64_10585 PF01883 Iron-sulfur cluster assembly protein CPY64_10590 PF05138 Phenylacetic acid catabolic protein CPY64_10595 PF06243 Phenylacetic acid degradation B CPY64_10600 PF05138 Phenylacetic acid catabolic protein CPY64_10605 PF00929 Exonuclease CPY64_10610 PF01435 Peptidase family M48 CPY64_10610 PF16491 CAAX prenyl protease N-terminal, five membrane helices CPY64_10615 PF03193 RsgA GTPase CPY64_10625 PF01245 Ribosomal protein L19 CPY64_10635 PF03099 Biotin/lipoate A/B protein ligase family CPY64_10635 PF10437 Bacterial lipoate protein ligase C-terminus CPY64_10645 PF10417 C-terminal domain of 1-Cys peroxiredoxin CPY64_10645 PF00578 AhpC/TSA family CPY64_10650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CPY64_10650 PF12806 Acetyl-CoA dehydrogenase C-terminal like CPY64_10650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CPY64_10650 PF02770 Acyl-CoA dehydrogenase, middle domain CPY64_10655 PF01012 Electron transfer flavoprotein domain CPY64_10655 PF00766 Electron transfer flavoprotein FAD-binding domain CPY64_10660 PF01012 Electron transfer flavoprotein domain CPY64_10665 PF00850 Histone deacetylase domain CPY64_10670 PF13406 Transglycosylase SLT domain CPY64_10675 PF00291 Pyridoxal-phosphate dependent enzyme CPY64_10680 PF10531 SLBB domain CPY64_10685 PF01370 NAD dependent epimerase/dehydratase family CPY64_10690 PF00294 pfkB family carbohydrate kinase CPY64_10695 PF18073 Rubredoxin metal binding domain CPY64_10705 PF00216 Bacterial DNA-binding protein CPY64_10710 PF00575 S1 RNA binding domain CPY64_10715 PF02224 Cytidylate kinase CPY64_10720 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CPY64_10725 PF02153 Prephenate dehydrogenase CPY64_10730 PF00800 Prephenate dehydratase CPY64_10730 PF01842 ACT domain CPY64_10730 PF01817 Chorismate mutase type II CPY64_10735 PF00266 Aminotransferase class-V CPY64_10740 PF03989 DNA gyrase C-terminal domain, beta-propeller CPY64_10740 PF00521 DNA gyrase/topoisomerase IV, subunit A CPY64_10745 PF00691 OmpA family CPY64_10755 PF13419 Haloacid dehalogenase-like hydrolase CPY64_10760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_10760 PF03466 LysR substrate binding domain CPY64_10765 PF07690 Major Facilitator Superfamily CPY64_10770 PF11953 Domain of unknown function (DUF3470) CPY64_10770 PF00037 4Fe-4S binding domain CPY64_10780 PF07715 TonB-dependent Receptor Plug Domain CPY64_10780 PF00593 TonB dependent receptor CPY64_10795 PF18011 C-terminal domain found in long catalases CPY64_10795 PF06628 Catalase-related immune-responsive CPY64_10795 PF00199 Catalase CPY64_10805 PF08713 DNA alkylation repair enzyme CPY64_10815 PF00155 Aminotransferase class I and II CPY64_10820 PF03466 LysR substrate binding domain CPY64_10820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_10825 PF01042 Endoribonuclease L-PSP CPY64_10830 PF00440 Bacterial regulatory proteins, tetR family CPY64_10860 PF00392 Bacterial regulatory proteins, gntR family CPY64_10860 PF00155 Aminotransferase class I and II CPY64_10885 PF02798 Glutathione S-transferase, N-terminal domain CPY64_10885 PF00043 Glutathione S-transferase, C-terminal domain CPY64_10895 PF00375 Sodium:dicarboxylate symporter family CPY64_10900 PF01810 LysE type translocator CPY64_10920 PF00474 Sodium:solute symporter family CPY64_10925 PF00072 Response regulator receiver domain CPY64_10925 PF00196 Bacterial regulatory proteins, luxR family CPY64_10930 PF01627 Hpt domain CPY64_10930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_10930 PF00072 Response regulator receiver domain CPY64_10930 PF00672 HAMP domain CPY64_10930 PF00512 His Kinase A (phospho-acceptor) domain CPY64_10940 PF14306 PUA-like domain CPY64_10940 PF01747 ATP-sulfurylase CPY64_10945 PF17284 Spermidine synthase tetramerisation domain CPY64_10950 PF00512 His Kinase A (phospho-acceptor) domain CPY64_10950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_10950 PF08521 Two-component sensor kinase N-terminal CPY64_10955 PF00486 Transcriptional regulatory protein, C terminal CPY64_10955 PF00072 Response regulator receiver domain CPY64_10960 PF08447 PAS fold CPY64_10960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPY64_10965 PF01169 Uncharacterized protein family UPF0016 CPY64_10975 PF03466 LysR substrate binding domain CPY64_10975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_10980 PF02525 Flavodoxin-like fold CPY64_10985 PF00925 GTP cyclohydrolase II CPY64_11000 PF03109 ABC1 family CPY64_11005 PF04228 Putative neutral zinc metallopeptidase CPY64_11015 PF07690 Major Facilitator Superfamily CPY64_11020 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CPY64_11025 PF01047 MarR family CPY64_11035 PF00543 Nitrogen regulatory protein P-II CPY64_11040 PF00909 Ammonium Transporter Family CPY64_11045 PF01322 Cytochrome C' CPY64_11050 PF00206 Lyase CPY64_11050 PF08328 Adenylosuccinate lyase C-terminal CPY64_11055 PF00043 Glutathione S-transferase, C-terminal domain CPY64_11055 PF13417 Glutathione S-transferase, N-terminal domain CPY64_11060 PF01925 Sulfite exporter TauE/SafE CPY64_11070 PF02913 FAD linked oxidases, C-terminal domain CPY64_11070 PF01565 FAD binding domain CPY64_11075 PF00793 DAHP synthetase I family CPY64_11080 PF04328 Selenoprotein, putative CPY64_11085 PF02554 Carbon starvation protein CstA CPY64_11085 PF13722 5TM C-terminal transporter carbon starvation CstA CPY64_11090 PF00497 Bacterial extracellular solute-binding proteins, family 3 CPY64_11095 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_11100 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_11105 PF00005 ABC transporter CPY64_11110 PF00205 Thiamine pyrophosphate enzyme, central domain CPY64_11110 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CPY64_11110 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPY64_11115 PF00171 Aldehyde dehydrogenase family CPY64_11120 PF01958 Domain of unknown function DUF108 CPY64_11120 PF03447 Homoserine dehydrogenase, NAD binding domain CPY64_11130 PF12697 Alpha/beta hydrolase family CPY64_11130 PF08241 Methyltransferase domain CPY64_11135 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_11140 PF00005 ABC transporter CPY64_11155 PF13609 Gram-negative porin CPY64_11160 PF01614 Bacterial transcriptional regulator CPY64_11160 PF09339 IclR helix-turn-helix domain CPY64_11170 PF05721 Phytanoyl-CoA dioxygenase (PhyH) CPY64_11175 PF06339 Ectoine synthase CPY64_11180 PF00202 Aminotransferase class-III CPY64_11185 PF00583 Acetyltransferase (GNAT) family CPY64_11190 PF01047 MarR family CPY64_11195 PF00892 EamA-like transporter family CPY64_11200 PF01523 Putative modulator of DNA gyrase CPY64_11205 PF00816 H-NS histone family CPY64_11215 PF01433 Peptidase family M1 domain CPY64_11215 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CPY64_11215 PF11940 Domain of unknown function (DUF3458) Ig-like fold CPY64_11220 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CPY64_11225 PF00107 Zinc-binding dehydrogenase CPY64_11225 PF08240 Alcohol dehydrogenase GroES-like domain CPY64_11235 PF00180 Isocitrate/isopropylmalate dehydrogenase CPY64_11240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPY64_11245 PF05872 Bacterial protein of unknown function (DUF853) CPY64_11250 PF01709 Transcriptional regulator CPY64_11255 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPY64_11255 PF02844 Phosphoribosylglycinamide synthetase, N domain CPY64_11255 PF02843 Phosphoribosylglycinamide synthetase, C domain CPY64_11260 PF01218 Coproporphyrinogen III oxidase CPY64_11265 PF01467 Cytidylyltransferase-like CPY64_11275 PF02590 Predicted SPOUT methyltransferase CPY64_11280 PF02545 Maf-like protein CPY64_11285 PF13098 Thioredoxin-like domain CPY64_11300 PF01253 Translation initiation factor SUI1 CPY64_11310 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CPY64_11310 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CPY64_11315 PF02798 Glutathione S-transferase, N-terminal domain CPY64_11315 PF14497 Glutathione S-transferase, C-terminal domain CPY64_11320 PF02401 LytB protein CPY64_11325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CPY64_11330 PF04002 RadC-like JAB domain CPY64_11335 PF01380 SIS domain CPY64_11335 PF01418 Helix-turn-helix domain, rpiR family CPY64_11340 PF00083 Sugar (and other) transporter CPY64_11350 PF07690 Major Facilitator Superfamily CPY64_11355 PF01197 Ribosomal protein L31 CPY64_11365 PF01554 MatE CPY64_11370 PF00571 CBS domain CPY64_11370 PF00005 ABC transporter CPY64_11375 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_11395 PF07690 Major Facilitator Superfamily CPY64_11400 PF00830 Ribosomal L28 family CPY64_11405 PF00471 Ribosomal protein L33 CPY64_11410 PF08264 Anticodon-binding domain of tRNA CPY64_11410 PF09334 tRNA synthetases class I (M) CPY64_11410 PF13603 Leucyl-tRNA synthetase, Domain 2 CPY64_11410 PF00133 tRNA synthetases class I (I, L, M and V) CPY64_11420 PF06144 DNA polymerase III, delta subunit CPY64_11420 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CPY64_11425 PF00171 Aldehyde dehydrogenase family CPY64_11445 PF01430 Hsp33 protein CPY64_11455 PF04977 Septum formation initiator CPY64_11460 PF00113 Enolase, C-terminal TIM barrel domain CPY64_11460 PF03952 Enolase, N-terminal domain CPY64_11470 PF07690 Major Facilitator Superfamily CPY64_11485 PF00793 DAHP synthetase I family CPY64_11490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CPY64_11495 PF00117 Glutamine amidotransferase class-I CPY64_11495 PF06418 CTP synthase N-terminus CPY64_11500 PF01321 Creatinase/Prolidase N-terminal domain CPY64_11500 PF00557 Metallopeptidase family M24 CPY64_11505 PF01144 Coenzyme A transferase CPY64_11510 PF01144 Coenzyme A transferase CPY64_11525 PF00892 EamA-like transporter family CPY64_11530 PF00501 AMP-binding enzyme CPY64_11530 PF13193 AMP-binding enzyme C-terminal domain CPY64_11530 PF16177 Acetyl-coenzyme A synthetase N-terminus CPY64_11540 PF00877 NlpC/P60 family CPY64_11550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_11550 PF03466 LysR substrate binding domain CPY64_11555 PF00171 Aldehyde dehydrogenase family CPY64_11560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_11560 PF03466 LysR substrate binding domain CPY64_11570 PF02789 Cytosol aminopeptidase family, N-terminal domain CPY64_11570 PF00883 Cytosol aminopeptidase family, catalytic domain CPY64_11580 PF01027 Inhibitor of apoptosis-promoting Bax1 CPY64_11585 PF00132 Bacterial transferase hexapeptide (six repeats) CPY64_11600 PF02565 Recombination protein O C terminal CPY64_11600 PF11967 Recombination protein O N terminal CPY64_11605 PF07650 KH domain CPY64_11605 PF01926 50S ribosome-binding GTPase CPY64_11610 PF14622 Ribonuclease-III-like CPY64_11610 PF00035 Double-stranded RNA binding motif CPY64_11615 PF10502 Signal peptidase, peptidase S26 CPY64_11620 PF03144 Elongation factor Tu domain 2 CPY64_11620 PF00009 Elongation factor Tu GTP binding domain CPY64_11620 PF00679 Elongation factor G C-terminus CPY64_11620 PF06421 GTP-binding protein LepA C-terminus CPY64_11625 PF13180 PDZ domain CPY64_11640 PF08281 Sigma-70, region 4 CPY64_11640 PF04542 Sigma-70 region 2 CPY64_11650 PF00109 Beta-ketoacyl synthase, N-terminal domain CPY64_11650 PF02801 Beta-ketoacyl synthase, C-terminal domain CPY64_11655 PF00550 Phosphopantetheine attachment site CPY64_11665 PF00698 Acyl transferase domain CPY64_11670 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CPY64_11670 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CPY64_11675 PF02504 Fatty acid synthesis protein CPY64_11680 PF01783 Ribosomal L32p protein family CPY64_11685 PF02620 Large ribosomal RNA subunit accumulation protein YceD CPY64_11690 PF02545 Maf-like protein CPY64_11695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPY64_11700 PF01510 N-acetylmuramoyl-L-alanine amidase CPY64_11705 PF01794 Ferric reductase like transmembrane component CPY64_11710 PF00174 Oxidoreductase molybdopterin binding domain CPY64_11715 PF13419 Haloacid dehalogenase-like hydrolase CPY64_11720 PF01479 S4 domain CPY64_11720 PF00849 RNA pseudouridylate synthase CPY64_11725 PF00575 S1 RNA binding domain CPY64_11725 PF10150 Ribonuclease E/G family CPY64_11725 PF12111 Polyribonucleotide phosphorylase C terminal CPY64_11730 PF01039 Carboxyl transferase domain CPY64_11730 PF17848 Acetyl-coA carboxylase zinc finger domain CPY64_11735 PF00290 Tryptophan synthase alpha chain CPY64_11740 PF00291 Pyridoxal-phosphate dependent enzyme CPY64_11745 PF13291 ACT domain CPY64_11745 PF04607 Region found in RelA / SpoT proteins CPY64_11745 PF02824 TGS domain CPY64_11755 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CPY64_11755 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CPY64_11760 PF11953 Domain of unknown function (DUF3470) CPY64_11760 PF00037 4Fe-4S binding domain CPY64_11770 PF04060 Putative Fe-S cluster CPY64_11775 PF00730 HhH-GPD superfamily base excision DNA repair protein CPY64_11775 PF00633 Helix-hairpin-helix motif CPY64_11775 PF10576 Iron-sulfur binding domain of endonuclease III CPY64_11780 PF00664 ABC transporter transmembrane region CPY64_11780 PF00005 ABC transporter CPY64_11785 PF03922 OmpW family CPY64_11790 PF00005 ABC transporter CPY64_11795 PF00005 ABC transporter CPY64_11795 PF12399 Branched-chain amino acid ATP-binding cassette transporter CPY64_11810 PF01641 SelR domain CPY64_11815 PF04279 Intracellular septation protein A CPY64_11830 PF03120 NAD-dependent DNA ligase OB-fold domain CPY64_11830 PF12826 Helix-hairpin-helix motif CPY64_11830 PF00533 BRCA1 C Terminus (BRCT) domain CPY64_11830 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CPY64_11830 PF01653 NAD-dependent DNA ligase adenylation domain CPY64_11840 PF02463 RecF/RecN/SMC N terminal domain CPY64_11840 PF06470 SMC proteins Flexible Hinge Domain CPY64_11845 PF07690 Major Facilitator Superfamily CPY64_11850 PF03167 Uracil DNA glycosylase superfamily CPY64_11855 PF00814 Glycoprotease family CPY64_11860 PF00072 Response regulator receiver domain CPY64_11860 PF00486 Transcriptional regulatory protein, C terminal CPY64_11865 PF00672 HAMP domain CPY64_11865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_11865 PF00512 His Kinase A (phospho-acceptor) domain CPY64_11870 PF02542 YgbB family CPY64_11875 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CPY64_11880 PF03461 TRCF domain CPY64_11880 PF17757 UvrB interaction domain CPY64_11880 PF02559 CarD-like/TRCF domain CPY64_11880 PF00271 Helicase conserved C-terminal domain CPY64_11880 PF00270 DEAD/DEAH box helicase CPY64_11890 PF03060 Nitronate monooxygenase CPY64_11900 PF00361 Proton-conducting membrane transporter CPY64_11905 PF00361 Proton-conducting membrane transporter CPY64_11905 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CPY64_11910 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CPY64_11910 PF00361 Proton-conducting membrane transporter CPY64_11915 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CPY64_11920 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CPY64_11925 PF12838 4Fe-4S dicluster domain CPY64_11930 PF00146 NADH dehydrogenase CPY64_11935 PF00384 Molybdopterin oxidoreductase CPY64_11935 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CPY64_11935 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CPY64_11940 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CPY64_11940 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CPY64_11940 PF10531 SLBB domain CPY64_11950 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CPY64_11955 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CPY64_11960 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CPY64_11965 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CPY64_11970 PF13609 Gram-negative porin CPY64_11980 PF03840 Preprotein translocase SecG subunit CPY64_11985 PF00121 Triosephosphate isomerase CPY64_11990 PF08240 Alcohol dehydrogenase GroES-like domain CPY64_11990 PF00107 Zinc-binding dehydrogenase CPY64_12010 PF07969 Amidohydrolase family CPY64_12015 PF03725 3' exoribonuclease family, domain 2 CPY64_12015 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CPY64_12015 PF00013 KH domain CPY64_12015 PF01138 3' exoribonuclease family, domain 1 CPY64_12015 PF00575 S1 RNA binding domain CPY64_12020 PF00312 Ribosomal protein S15 CPY64_12025 PF01066 CDP-alcohol phosphatidyltransferase CPY64_12030 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CPY64_12030 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CPY64_12035 PF10369 Small subunit of acetolactate synthase CPY64_12040 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CPY64_12040 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPY64_12040 PF00205 Thiamine pyrophosphate enzyme, central domain CPY64_12045 PF12805 FUSC-like inner membrane protein yccS CPY64_12050 PF03883 Peroxide stress protein YaaA CPY64_12065 PF01381 Helix-turn-helix CPY64_12125 PF02403 Seryl-tRNA synthetase N-terminal domain CPY64_12125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPY64_12130 PF12002 MgsA AAA+ ATPase C terminal CPY64_12130 PF16193 AAA C-terminal domain CPY64_12130 PF00004 ATPase family associated with various cellular activities (AAA) CPY64_12135 PF03548 Outer membrane lipoprotein carrier protein LolA CPY64_12140 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CPY64_12140 PF17854 FtsK alpha domain CPY64_12140 PF09397 Ftsk gamma domain CPY64_12140 PF01580 FtsK/SpoIIIE family CPY64_12145 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPY64_12165 PF07690 Major Facilitator Superfamily CPY64_12185 PF00135 Carboxylesterase family CPY64_12190 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CPY64_12190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CPY64_12195 PF00180 Isocitrate/isopropylmalate dehydrogenase CPY64_12210 PF00034 Cytochrome c CPY64_12215 PF01434 Peptidase family M41 CPY64_12215 PF00004 ATPase family associated with various cellular activities (AAA) CPY64_12215 PF17862 AAA+ lid domain CPY64_12235 PF02954 Bacterial regulatory protein, Fis family CPY64_12235 PF00072 Response regulator receiver domain CPY64_12235 PF00158 Sigma-54 interaction domain CPY64_12265 PF00437 Type II/IV secretion system protein CPY64_12275 PF13629 Pilus formation protein N terminal region CPY64_12275 PF00263 Bacterial type II and III secretion system protein CPY64_12275 PF04972 BON domain CPY64_12305 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CPY64_12305 PF08479 POTRA domain, ShlB-type CPY64_12335 PF05193 Peptidase M16 inactive domain CPY64_12335 PF00675 Insulinase (Peptidase family M16) CPY64_12340 PF00226 DnaJ domain CPY64_12340 PF01556 DnaJ C terminal domain CPY64_12340 PF00684 DnaJ central domain CPY64_12345 PF00012 Hsp70 protein CPY64_12350 PF01025 GrpE CPY64_12355 PF00762 Ferrochelatase CPY64_12360 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CPY64_12360 PF01628 HrcA protein C terminal domain CPY64_12365 PF01513 ATP-NAD kinase CPY64_12370 PF02463 RecF/RecN/SMC N terminal domain CPY64_12375 PF01475 Ferric uptake regulator family CPY64_12380 PF04355 SmpA / OmlA family CPY64_12385 PF01113 Dihydrodipicolinate reductase, N-terminus CPY64_12385 PF05173 Dihydrodipicolinate reductase, C-terminus CPY64_12400 PF00561 alpha/beta hydrolase fold CPY64_12405 PF00465 Iron-containing alcohol dehydrogenase CPY64_12410 PF07690 Major Facilitator Superfamily CPY64_12430 PF00563 EAL domain CPY64_12430 PF00990 Diguanylate cyclase, GGDEF domain CPY64_12430 PF03707 Bacterial signalling protein N terminal repeat CPY64_12435 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CPY64_12445 PF05598 Transposase domain (DUF772) CPY64_12445 PF01609 Transposase DDE domain CPY64_12455 PF01565 FAD binding domain CPY64_12455 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CPY64_12485 PF02321 Outer membrane efflux protein CPY64_12490 PF13533 Biotin-lipoyl like CPY64_12505 PF07690 Major Facilitator Superfamily CPY64_12520 PF07715 TonB-dependent Receptor Plug Domain CPY64_12520 PF07660 Secretin and TonB N terminus short domain CPY64_12520 PF00593 TonB dependent receptor CPY64_12525 PF07690 Major Facilitator Superfamily CPY64_12540 PF00756 Putative esterase CPY64_12560 PF00465 Iron-containing alcohol dehydrogenase CPY64_12565 PF00005 ABC transporter CPY64_12570 PF09383 NIL domain CPY64_12570 PF00005 ABC transporter CPY64_12580 PF02653 Branched-chain amino acid transport system / permease component CPY64_12590 PF00171 Aldehyde dehydrogenase family CPY64_12595 PF09339 IclR helix-turn-helix domain CPY64_12595 PF01614 Bacterial transcriptional regulator CPY64_12600 PF00271 Helicase conserved C-terminal domain CPY64_12600 PF00270 DEAD/DEAH box helicase CPY64_12600 PF03880 DbpA RNA binding domain CPY64_12605 PF05973 Phage derived protein Gp49-like (DUF891) CPY64_12610 PF01381 Helix-turn-helix CPY64_12615 PF03466 LysR substrate binding domain CPY64_12615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_12620 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CPY64_12620 PF00355 Rieske [2Fe-2S] domain CPY64_12625 PF00866 Ring hydroxylating beta subunit CPY64_12630 PF00355 Rieske [2Fe-2S] domain CPY64_12635 PF00106 short chain dehydrogenase CPY64_12640 PF14759 Reductase C-terminal CPY64_12640 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPY64_12645 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CPY64_12650 PF12697 Alpha/beta hydrolase family CPY64_12655 PF01557 Fumarylacetoacetate (FAA) hydrolase family CPY64_12660 PF01118 Semialdehyde dehydrogenase, NAD binding domain CPY64_12660 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CPY64_12665 PF00682 HMGL-like CPY64_12665 PF07836 DmpG-like communication domain CPY64_12670 PF07690 Major Facilitator Superfamily CPY64_12685 PF01425 Amidase CPY64_12690 PF00155 Aminotransferase class I and II CPY64_12690 PF00392 Bacterial regulatory proteins, gntR family CPY64_12695 PF07690 Major Facilitator Superfamily CPY64_12710 PF11339 Protein of unknown function (DUF3141) CPY64_12715 PF02803 Thiolase, C-terminal domain CPY64_12715 PF00108 Thiolase, N-terminal domain CPY64_12720 PF00106 short chain dehydrogenase CPY64_12735 PF00005 ABC transporter CPY64_12740 PF13533 Biotin-lipoyl like CPY64_12745 PF02321 Outer membrane efflux protein CPY64_12750 PF00561 alpha/beta hydrolase fold CPY64_12750 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CPY64_12760 PF02592 Putative vitamin uptake transporter CPY64_12765 PF06508 Queuosine biosynthesis protein QueC CPY64_12770 PF00464 Serine hydroxymethyltransferase CPY64_12775 PF00266 Aminotransferase class-V CPY64_12780 PF00392 Bacterial regulatory proteins, gntR family CPY64_12780 PF00155 Aminotransferase class I and II CPY64_12785 PF00464 Serine hydroxymethyltransferase CPY64_12800 PF00117 Glutamine amidotransferase class-I CPY64_12805 PF08543 Phosphomethylpyrimidine kinase CPY64_12810 PF02028 BCCT, betaine/carnitine/choline family transporter CPY64_12815 PF09278 MerR, DNA binding CPY64_12815 PF00376 MerR family regulatory protein CPY64_12825 PF00873 AcrB/AcrD/AcrF family CPY64_12850 PF02293 AmiS/UreI family transporter CPY64_12875 PF00115 Cytochrome C and Quinol oxidase polypeptide I CPY64_12880 PF00155 Aminotransferase class I and II CPY64_12880 PF00392 Bacterial regulatory proteins, gntR family CPY64_12890 PF03466 LysR substrate binding domain CPY64_12890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_12895 PF00202 Aminotransferase class-III CPY64_12900 PF01177 Asp/Glu/Hydantoin racemase CPY64_12915 PF04185 Phosphoesterase family CPY64_12915 PF05506 Domain of unknown function (DUF756) CPY64_12930 PF01389 OmpA-like transmembrane domain CPY64_12930 PF00691 OmpA family CPY64_12935 PF03895 YadA-like membrane anchor domain CPY64_12935 PF13018 Extended Signal Peptide of Type V secretion system CPY64_12935 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin CPY64_12935 PF05662 Coiled stalk of trimeric autotransporter adhesin CPY64_12945 PF00239 Resolvase, N terminal domain CPY64_12945 PF02796 Helix-turn-helix domain of resolvase CPY64_12950 PF00482 Type II secretion system (T2SS), protein F CPY64_12955 PF00437 Type II/IV secretion system protein CPY64_12960 PF03958 Bacterial type II/III secretion system short domain CPY64_12960 PF00263 Bacterial type II and III secretion system protein CPY64_12985 PF11612 Type II secretion system (T2SS), protein J CPY64_12985 PF07963 Prokaryotic N-terminal methylation motif CPY64_12995 PF07963 Prokaryotic N-terminal methylation motif CPY64_13000 PF08334 Type II secretion system (T2SS), protein G CPY64_13000 PF07963 Prokaryotic N-terminal methylation motif CPY64_13010 PF00571 CBS domain CPY64_13010 PF00478 IMP dehydrogenase / GMP reductase domain CPY64_13015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CPY64_13025 PF00206 Lyase CPY64_13025 PF10415 Fumarase C C-terminus CPY64_13030 PF01047 MarR family CPY64_13045 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CPY64_13050 PF04377 Arginine-tRNA-protein transferase, C terminus CPY64_13050 PF04376 Arginine-tRNA-protein transferase, N terminus CPY64_13055 PF01180 Dihydroorotate dehydrogenase CPY64_13070 PF01614 Bacterial transcriptional regulator CPY64_13070 PF09339 IclR helix-turn-helix domain CPY64_13090 PF00271 Helicase conserved C-terminal domain CPY64_13090 PF00270 DEAD/DEAH box helicase CPY64_13110 PF00561 alpha/beta hydrolase fold CPY64_13115 PF01435 Peptidase family M48 CPY64_13135 PF01494 FAD binding domain CPY64_13140 PF01207 Dihydrouridine synthase (Dus) CPY64_13145 PF02954 Bacterial regulatory protein, Fis family CPY64_13150 PF02142 MGS-like domain CPY64_13150 PF01808 AICARFT/IMPCHase bienzyme CPY64_13155 PF02075 Crossover junction endodeoxyribonuclease RuvC CPY64_13160 PF01330 RuvA N terminal domain CPY64_13160 PF07499 RuvA, C-terminal domain CPY64_13165 PF00291 Pyridoxal-phosphate dependent enzyme CPY64_13170 PF05491 RuvB C-terminal winged helix domain CPY64_13170 PF17864 RuvB AAA lid domain CPY64_13170 PF05496 Holliday junction DNA helicase RuvB P-loop domain CPY64_13180 PF01979 Amidohydrolase family CPY64_13190 PF00875 DNA photolyase CPY64_13190 PF03441 FAD binding domain of DNA photolyase CPY64_13235 PF00581 Rhodanese-like domain CPY64_13240 PF04143 Sulphur transport CPY64_13250 PF01625 Peptide methionine sulfoxide reductase CPY64_13255 PF00034 Cytochrome c CPY64_13260 PF01790 Prolipoprotein diacylglyceryl transferase CPY64_13285 PF01970 Tripartite tricarboxylate transporter TctA family CPY64_13295 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_13300 PF08402 TOBE domain CPY64_13300 PF00005 ABC transporter CPY64_13310 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CPY64_13310 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CPY64_13315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_13315 PF00512 His Kinase A (phospho-acceptor) domain CPY64_13320 PF00072 Response regulator receiver domain CPY64_13320 PF00486 Transcriptional regulatory protein, C terminal CPY64_13325 PF00293 NUDIX domain CPY64_13330 PF03129 Anticodon binding domain CPY64_13330 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPY64_13330 PF04073 Aminoacyl-tRNA editing domain CPY64_13335 PF03061 Thioesterase superfamily CPY64_13340 PF01618 MotA/TolQ/ExbB proton channel family CPY64_13345 PF02472 Biopolymer transport protein ExbD/TolR CPY64_13355 PF07676 WD40-like Beta Propeller Repeat CPY64_13355 PF04052 TolB amino-terminal domain CPY64_13360 PF00691 OmpA family CPY64_13370 PF00561 alpha/beta hydrolase fold CPY64_13385 PF01554 MatE CPY64_13390 PF02608 ABC transporter substrate-binding protein PnrA-like CPY64_13405 PF00005 ABC transporter CPY64_13415 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain CPY64_13415 PF01113 Dihydrodipicolinate reductase, N-terminus CPY64_13420 PF01810 LysE type translocator CPY64_13425 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CPY64_13425 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CPY64_13430 PF03466 LysR substrate binding domain CPY64_13430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_13440 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPY64_13440 PF13192 Thioredoxin domain CPY64_13445 PF10417 C-terminal domain of 1-Cys peroxiredoxin CPY64_13445 PF00578 AhpC/TSA family CPY64_13450 PF00155 Aminotransferase class I and II CPY64_13455 PF00892 EamA-like transporter family CPY64_13460 PF01507 Phosphoadenosine phosphosulfate reductase family CPY64_13465 PF01507 Phosphoadenosine phosphosulfate reductase family CPY64_13470 PF00009 Elongation factor Tu GTP binding domain CPY64_13475 PF00324 Amino acid permease CPY64_13480 PF00171 Aldehyde dehydrogenase family CPY64_13485 PF01266 FAD dependent oxidoreductase CPY64_13490 PF07063 Domain of unknown function (DUF1338) CPY64_13495 PF03466 LysR substrate binding domain CPY64_13495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_13500 PF00871 Acetokinase family CPY64_13505 PF01515 Phosphate acetyl/butaryl transferase CPY64_13515 PF03466 LysR substrate binding domain CPY64_13515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_13520 PF17954 Quercetinase C-terminal cupin domain CPY64_13520 PF02678 Pirin CPY64_13530 PF17158 Membrane-associated sensor, integral membrane domain CPY64_13530 PF00990 Diguanylate cyclase, GGDEF domain CPY64_13535 PF01425 Amidase CPY64_13545 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase CPY64_13550 PF00166 Chaperonin 10 Kd subunit CPY64_13555 PF00118 TCP-1/cpn60 chaperonin family CPY64_13560 PF01219 Prokaryotic diacylglycerol kinase CPY64_13565 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CPY64_13570 PF02515 CoA-transferase family III CPY64_13575 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_13580 PF01614 Bacterial transcriptional regulator CPY64_13580 PF09339 IclR helix-turn-helix domain CPY64_13585 PF02464 Competence-damaged protein CPY64_13590 PF04608 Phosphatidylglycerophosphatase A CPY64_13595 PF00586 AIR synthase related protein, N-terminal domain CPY64_13595 PF02769 AIR synthase related protein, C-terminal domain CPY64_13600 PF01029 NusB family CPY64_13605 PF00885 6,7-dimethyl-8-ribityllumazine synthase CPY64_13610 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CPY64_13610 PF00925 GTP cyclohydrolase II CPY64_13625 PF02881 SRP54-type protein, helical bundle domain CPY64_13625 PF00448 SRP54-type protein, GTPase domain CPY64_13635 PF01467 Cytidylyltransferase-like CPY64_13640 PF00037 4Fe-4S binding domain CPY64_13655 PF01053 Cys/Met metabolism PLP-dependent enzyme CPY64_13665 PF02423 Ornithine cyclodeaminase/mu-crystallin family CPY64_13670 PF07317 Flagellar regulator YcgR CPY64_13670 PF07238 PilZ domain CPY64_13675 PF12804 MobA-like NTP transferase domain CPY64_13695 PF00857 Isochorismatase family CPY64_13705 PF00561 alpha/beta hydrolase fold CPY64_13710 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CPY64_13710 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPY64_13710 PF00034 Cytochrome c CPY64_13715 PF00111 2Fe-2S iron-sulfur cluster binding domain CPY64_13715 PF01799 [2Fe-2S] binding domain CPY64_13720 PF00034 Cytochrome c CPY64_13720 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPY64_13720 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CPY64_13730 PF00005 ABC transporter CPY64_13735 PF12399 Branched-chain amino acid ATP-binding cassette transporter CPY64_13735 PF00005 ABC transporter CPY64_13745 PF13458 Periplasmic binding protein CPY64_13755 PF01804 Penicillin amidase CPY64_13760 PF00990 Diguanylate cyclase, GGDEF domain CPY64_13760 PF17158 Membrane-associated sensor, integral membrane domain CPY64_13765 PF03466 LysR substrate binding domain CPY64_13765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_13770 PF16347 Domain of unknown function (DUF4976) CPY64_13770 PF00884 Sulfatase CPY64_13775 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_13785 PF01548 Transposase CPY64_13785 PF02371 Transposase IS116/IS110/IS902 family CPY64_13795 PF12706 Beta-lactamase superfamily domain CPY64_13795 PF00753 Metallo-beta-lactamase superfamily CPY64_13800 PF00392 Bacterial regulatory proteins, gntR family CPY64_13800 PF07702 UTRA domain CPY64_13810 PF13091 PLD-like domain CPY64_13820 PF03853 YjeF-related protein N-terminus CPY64_13820 PF01256 Carbohydrate kinase CPY64_13825 PF02625 XdhC and CoxI family CPY64_13825 PF13478 XdhC Rossmann domain CPY64_13830 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_13840 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_13845 PF00005 ABC transporter CPY64_13855 PF01799 [2Fe-2S] binding domain CPY64_13855 PF00111 2Fe-2S iron-sulfur cluster binding domain CPY64_13860 PF00941 FAD binding domain in molybdopterin dehydrogenase CPY64_13860 PF03450 CO dehydrogenase flavoprotein C-terminal domain CPY64_13865 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CPY64_13865 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CPY64_13875 PF00355 Rieske [2Fe-2S] domain CPY64_13880 PF14759 Reductase C-terminal CPY64_13880 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPY64_13885 PF00355 Rieske [2Fe-2S] domain CPY64_13885 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CPY64_13900 PF01548 Transposase CPY64_13900 PF02371 Transposase IS116/IS110/IS902 family CPY64_13905 PF00857 Isochorismatase family CPY64_13915 PF00561 alpha/beta hydrolase fold CPY64_13925 PF01047 MarR family CPY64_13930 PF00005 ABC transporter CPY64_13945 PF07715 TonB-dependent Receptor Plug Domain CPY64_13945 PF00593 TonB dependent receptor CPY64_13950 PF02667 Short chain fatty acid transporter CPY64_13955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_13955 PF03466 LysR substrate binding domain CPY64_13960 PF01979 Amidohydrolase family CPY64_13965 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_13975 PF00929 Exonuclease CPY64_13980 PF00873 AcrB/AcrD/AcrF family CPY64_13985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CPY64_13990 PF00075 RNase H CPY64_13995 PF08241 Methyltransferase domain CPY64_14000 PF00753 Metallo-beta-lactamase superfamily CPY64_14000 PF16123 Hydroxyacylglutathione hydrolase C-terminus CPY64_14005 PF01476 LysM domain CPY64_14005 PF01464 Transglycosylase SLT domain CPY64_14015 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_14020 PF09084 NMT1/THI5 like CPY64_14025 PF00941 FAD binding domain in molybdopterin dehydrogenase CPY64_14025 PF03450 CO dehydrogenase flavoprotein C-terminal domain CPY64_14030 PF01799 [2Fe-2S] binding domain CPY64_14030 PF00111 2Fe-2S iron-sulfur cluster binding domain CPY64_14035 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CPY64_14035 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CPY64_14045 PF01047 MarR family CPY64_14050 PF02954 Bacterial regulatory protein, Fis family CPY64_14050 PF00072 Response regulator receiver domain CPY64_14050 PF00158 Sigma-54 interaction domain CPY64_14055 PF00512 His Kinase A (phospho-acceptor) domain CPY64_14055 PF02743 Cache domain CPY64_14055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_14060 PF00375 Sodium:dicarboxylate symporter family CPY64_14095 PF04073 Aminoacyl-tRNA editing domain CPY64_14100 PF00158 Sigma-54 interaction domain CPY64_14100 PF01590 GAF domain CPY64_14100 PF02954 Bacterial regulatory protein, Fis family CPY64_14110 PF00309 Sigma-54 factor, Activator interacting domain (AID) CPY64_14110 PF04963 Sigma-54 factor, core binding domain CPY64_14110 PF04552 Sigma-54, DNA binding domain CPY64_14115 PF00982 Glycosyltransferase family 20 CPY64_14135 PF02358 Trehalose-phosphatase CPY64_14150 PF05995 Cysteine dioxygenase type I CPY64_14155 PF00378 Enoyl-CoA hydratase/isomerase CPY64_14160 PF00583 Acetyltransferase (GNAT) family CPY64_14160 PF13380 CoA binding domain CPY64_14160 PF13607 Succinyl-CoA ligase like flavodoxin domain CPY64_14165 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_14170 PF00107 Zinc-binding dehydrogenase CPY64_14170 PF08240 Alcohol dehydrogenase GroES-like domain CPY64_14175 PF02515 CoA-transferase family III CPY64_14180 PF00378 Enoyl-CoA hydratase/isomerase CPY64_14200 PF00753 Metallo-beta-lactamase superfamily CPY64_14200 PF14863 Alkyl sulfatase dimerisation CPY64_14200 PF14864 Alkyl sulfatase C-terminal CPY64_14215 PF00501 AMP-binding enzyme CPY64_14215 PF13193 AMP-binding enzyme C-terminal domain CPY64_14230 PF03466 LysR substrate binding domain CPY64_14230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_14245 PF02040 Arsenical pump membrane protein CPY64_14250 PF03960 ArsC family CPY64_14255 PF03358 NADPH-dependent FMN reductase CPY64_14260 PF00072 Response regulator receiver domain CPY64_14260 PF00486 Transcriptional regulatory protein, C terminal CPY64_14265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_14265 PF00512 His Kinase A (phospho-acceptor) domain CPY64_14265 PF08521 Two-component sensor kinase N-terminal CPY64_14280 PF01872 RibD C-terminal domain CPY64_14280 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CPY64_14285 PF03477 ATP cone domain CPY64_14290 PF00464 Serine hydroxymethyltransferase CPY64_14295 PF01161 Phosphatidylethanolamine-binding protein CPY64_14300 PF01479 S4 domain CPY64_14300 PF00579 tRNA synthetases class I (W and Y) CPY64_14305 PF04225 Opacity-associated protein A LysM-like domain CPY64_14305 PF01551 Peptidase family M23 CPY64_14310 PF03702 Anhydro-N-acetylmuramic acid kinase CPY64_14315 PF01521 Iron-sulphur cluster biosynthesis CPY64_14325 PF02774 Semialdehyde dehydrogenase, dimerisation domain CPY64_14325 PF01118 Semialdehyde dehydrogenase, NAD binding domain CPY64_14330 PF00380 Ribosomal protein S9/S16 CPY64_14335 PF00572 Ribosomal protein L13 CPY64_14340 PF03480 Bacterial extracellular solute-binding protein, family 7 CPY64_14345 PF01523 Putative modulator of DNA gyrase CPY64_14350 PF04751 Protein of unknown function (DUF615) CPY64_14365 PF00689 Cation transporting ATPase, C-terminus CPY64_14365 PF00690 Cation transporter/ATPase, N-terminus CPY64_14370 PF13426 PAS domain CPY64_14370 PF08448 PAS fold CPY64_14370 PF00072 Response regulator receiver domain CPY64_14370 PF00512 His Kinase A (phospho-acceptor) domain CPY64_14370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_14375 PF00196 Bacterial regulatory proteins, luxR family CPY64_14375 PF00072 Response regulator receiver domain CPY64_14380 PF00749 tRNA synthetases class I (E and Q), catalytic domain CPY64_14385 PF07152 YaeQ protein CPY64_14395 PF01037 Lrp/AsnC ligand binding domain CPY64_14410 PF02325 YGGT family CPY64_14420 PF05433 Glycine zipper 2TM domain CPY64_14425 PF00294 pfkB family carbohydrate kinase CPY64_14440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPY64_14440 PF00289 Biotin carboxylase, N-terminal domain CPY64_14440 PF02785 Biotin carboxylase C-terminal domain CPY64_14445 PF00364 Biotin-requiring enzyme CPY64_14450 PF01220 Dehydroquinase class II CPY64_14455 PF00578 AhpC/TSA family CPY64_14460 PF01225 Mur ligase family, catalytic domain CPY64_14460 PF02875 Mur ligase family, glutamate ligase domain CPY64_14460 PF08245 Mur ligase middle domain CPY64_14465 PF05728 Uncharacterised protein family (UPF0227) CPY64_14480 PF01488 Shikimate / quinate 5-dehydrogenase CPY64_14480 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CPY64_14480 PF08501 Shikimate dehydrogenase substrate binding domain CPY64_14485 PF00912 Transglycosylase CPY64_14495 PF00149 Calcineurin-like phosphoesterase CPY64_14500 PF01553 Acyltransferase CPY64_14505 PF03652 Holliday junction resolvase CPY64_14510 PF02622 Uncharacterized ACR, COG1678 CPY64_14515 PF00301 Rubredoxin CPY64_14525 PF02581 Thiamine monophosphate synthase CPY64_14530 PF00202 Aminotransferase class-III CPY64_14535 PF00501 AMP-binding enzyme CPY64_14535 PF13193 AMP-binding enzyme C-terminal domain CPY64_14545 PF01960 ArgJ family CPY64_14555 PF05532 CsbD-like CPY64_14560 PF00829 Ribosomal prokaryotic L21 protein CPY64_14565 PF01016 Ribosomal L27 protein CPY64_14570 PF01926 50S ribosome-binding GTPase CPY64_14570 PF01018 GTP1/OBG CPY64_14575 PF01472 PUA domain CPY64_14575 PF00696 Amino acid kinase family CPY64_14580 PF01266 FAD dependent oxidoreductase CPY64_14600 PF13667 ThiC-associated domain CPY64_14600 PF01964 Radical SAM ThiC family CPY64_14610 PF00691 OmpA family CPY64_14610 PF05736 OprF membrane domain CPY64_14615 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_14620 PF00005 ABC transporter CPY64_14625 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_14630 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_14635 PF00497 Bacterial extracellular solute-binding proteins, family 3 CPY64_14640 PF00005 ABC transporter CPY64_14645 PF18075 FtsX extracellular domain CPY64_14650 PF00730 HhH-GPD superfamily base excision DNA repair protein CPY64_14650 PF00633 Helix-hairpin-helix motif CPY64_14650 PF14815 NUDIX domain CPY64_14655 PF01098 Cell cycle protein CPY64_14660 PF00905 Penicillin binding protein transpeptidase domain CPY64_14660 PF03717 Penicillin-binding Protein dimerisation domain CPY64_14670 PF04085 rod shape-determining protein MreC CPY64_14680 PF02686 Glu-tRNAGln amidotransferase C subunit CPY64_14685 PF01425 Amidase CPY64_14690 PF02637 GatB domain CPY64_14690 PF02934 GatB/GatE catalytic domain CPY64_14695 PF00156 Phosphoribosyl transferase domain CPY64_14700 PF03466 LysR substrate binding domain CPY64_14700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_14705 PF07681 DoxX CPY64_14710 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CPY64_14720 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPY64_14725 PF07732 Multicopper oxidase CPY64_14725 PF00394 Multicopper oxidase CPY64_14730 PF00115 Cytochrome C and Quinol oxidase polypeptide I CPY64_14735 PF00158 Sigma-54 interaction domain CPY64_14735 PF02954 Bacterial regulatory protein, Fis family CPY64_14750 PF03616 Sodium/glutamate symporter CPY64_14755 PF00348 Polyprenyl synthetase CPY64_14765 PF00293 NUDIX domain CPY64_14770 PF17284 Spermidine synthase tetramerisation domain CPY64_14775 PF02321 Outer membrane efflux protein CPY64_14780 PF00873 AcrB/AcrD/AcrF family CPY64_14785 PF00873 AcrB/AcrD/AcrF family CPY64_14790 PF13533 Biotin-lipoyl like CPY64_14795 PF07072 Cell division protein CPY64_14800 PF01121 Dephospho-CoA kinase CPY64_14810 PF00072 Response regulator receiver domain CPY64_14810 PF00196 Bacterial regulatory proteins, luxR family CPY64_14815 PF02569 Pantoate-beta-alanine ligase CPY64_14820 PF02616 Segregation and condensation protein ScpA CPY64_14830 PF07690 Major Facilitator Superfamily CPY64_14835 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CPY64_14835 PF01243 Pyridoxamine 5'-phosphate oxidase CPY64_14840 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CPY64_14840 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CPY64_14845 PF00218 Indole-3-glycerol phosphate synthase CPY64_14855 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CPY64_14855 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPY64_14880 PF02310 B12 binding domain CPY64_14880 PF02607 B12 binding domain CPY64_14880 PF02965 Vitamin B12 dependent methionine synthase, activation domain CPY64_14880 PF00809 Pterin binding enzyme CPY64_14880 PF02574 Homocysteine S-methyltransferase CPY64_14885 PF00593 TonB dependent receptor CPY64_14885 PF07715 TonB-dependent Receptor Plug Domain CPY64_14890 PF01497 Periplasmic binding protein CPY64_14895 PF00593 TonB dependent receptor CPY64_14895 PF07660 Secretin and TonB N terminus short domain CPY64_14895 PF07715 TonB-dependent Receptor Plug Domain CPY64_14905 PF08281 Sigma-70, region 4 CPY64_14905 PF04542 Sigma-70 region 2 CPY64_14915 PF13609 Gram-negative porin CPY64_14925 PF01544 CorA-like Mg2+ transporter protein CPY64_14935 PF01544 CorA-like Mg2+ transporter protein CPY64_14950 PF05690 Thiazole biosynthesis protein ThiG CPY64_14955 PF08543 Phosphomethylpyrimidine kinase CPY64_14960 PF01048 Phosphorylase superfamily CPY64_14965 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CPY64_14975 PF02321 Outer membrane efflux protein CPY64_14980 PF01467 Cytidylyltransferase-like CPY64_14990 PF03109 ABC1 family CPY64_15005 PF01209 ubiE/COQ5 methyltransferase family CPY64_15010 PF00072 Response regulator receiver domain CPY64_15010 PF00486 Transcriptional regulatory protein, C terminal CPY64_15015 PF00512 His Kinase A (phospho-acceptor) domain CPY64_15015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_15015 PF00989 PAS fold CPY64_15015 PF11808 Phosphate regulon sensor protein PhoR CPY64_15025 PF02682 Carboxyltransferase domain, subdomain C and D CPY64_15030 PF02626 Carboxyltransferase domain, subdomain A and B CPY64_15035 PF00585 C-terminal regulatory domain of Threonine dehydratase CPY64_15035 PF00291 Pyridoxal-phosphate dependent enzyme CPY64_15040 PF09335 SNARE associated Golgi protein CPY64_15065 PF00082 Subtilase family CPY64_15065 PF12951 Passenger-associated-transport-repeat CPY64_15065 PF03797 Autotransporter beta-domain CPY64_15070 PF00156 Phosphoribosyl transferase domain CPY64_15075 PF00664 ABC transporter transmembrane region CPY64_15075 PF00005 ABC transporter CPY64_15080 PF00005 ABC transporter CPY64_15080 PF00664 ABC transporter transmembrane region CPY64_15085 PF08173 Membrane bound YbgT-like protein CPY64_15090 PF02322 Cytochrome bd terminal oxidase subunit II CPY64_15095 PF01654 Cytochrome bd terminal oxidase subunit I CPY64_15105 PF01380 SIS domain CPY64_15105 PF00571 CBS domain CPY64_15125 PF00005 ABC transporter CPY64_15130 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CPY64_15135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CPY64_15140 PF07475 HPr Serine kinase C-terminal domain CPY64_15140 PF02603 HPr Serine kinase N terminus CPY64_15145 PF03668 P-loop ATPase protein family CPY64_15150 PF05036 Sporulation related domain CPY64_15150 PF03330 Lytic transglycolase CPY64_15155 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPY64_15160 PF02021 Uncharacterised protein family UPF0102 CPY64_15165 PF13580 SIS domain CPY64_15175 PF00578 AhpC/TSA family CPY64_15180 PF00696 Amino acid kinase family CPY64_15190 PF00171 Aldehyde dehydrogenase family CPY64_15195 PF12833 Helix-turn-helix domain CPY64_15200 PF00899 ThiF family CPY64_15205 PF03572 Peptidase family S41 CPY64_15205 PF13180 PDZ domain CPY64_15210 PF01551 Peptidase family M23 CPY64_15215 PF00300 Histidine phosphatase superfamily (branch 1) CPY64_15220 PF00581 Rhodanese-like domain CPY64_15225 PF00462 Glutaredoxin CPY64_15230 PF02556 Preprotein translocase subunit SecB CPY64_15235 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CPY64_15235 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CPY64_15240 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_15245 PF00588 SpoU rRNA Methylase family CPY64_15250 PF00156 Phosphoribosyl transferase domain CPY64_15255 PF08241 Methyltransferase domain CPY64_15260 PF07715 TonB-dependent Receptor Plug Domain CPY64_15260 PF00593 TonB dependent receptor CPY64_15265 PF00486 Transcriptional regulatory protein, C terminal CPY64_15265 PF00072 Response regulator receiver domain CPY64_15270 PF00512 His Kinase A (phospho-acceptor) domain CPY64_15270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_15275 PF00885 6,7-dimethyl-8-ribityllumazine synthase CPY64_15280 PF02954 Bacterial regulatory protein, Fis family CPY64_15280 PF00072 Response regulator receiver domain CPY64_15280 PF00158 Sigma-54 interaction domain CPY64_15285 PF00672 HAMP domain CPY64_15285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_15295 PF01029 NusB family CPY64_15295 PF01189 16S rRNA methyltransferase RsmB/F CPY64_15300 PF18693 TRAM domain CPY64_15300 PF00919 Uncharacterized protein family UPF0004 CPY64_15300 PF04055 Radical SAM superfamily CPY64_15305 PF00132 Bacterial transferase hexapeptide (six repeats) CPY64_15310 PF16363 GDP-mannose 4,6 dehydratase CPY64_15315 PF17645 Arylmalonate decarboxylase CPY64_15320 PF03466 LysR substrate binding domain CPY64_15320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_15325 PF03328 HpcH/HpaI aldolase/citrate lyase family CPY64_15330 PF00005 ABC transporter CPY64_15335 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_15345 PF01757 Acyltransferase family CPY64_15355 PF02397 Bacterial sugar transferase CPY64_15360 PF00535 Glycosyl transferase family 2 CPY64_15370 PF01609 Transposase DDE domain CPY64_15370 PF05598 Transposase domain (DUF772) CPY64_15390 PF00977 Histidine biosynthesis protein CPY64_15395 PF00117 Glutamine amidotransferase class-I CPY64_15405 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CPY64_15410 PF00132 Bacterial transferase hexapeptide (six repeats) CPY64_15415 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CPY64_15415 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CPY64_15425 PF16363 GDP-mannose 4,6 dehydratase CPY64_15430 PF00483 Nucleotidyl transferase CPY64_15435 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CPY64_15440 PF04321 RmlD substrate binding domain CPY64_15445 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CPY64_15450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPY64_15450 PF02874 ATP synthase alpha/beta family, beta-barrel domain CPY64_15455 PF00231 ATP synthase CPY64_15460 PF02874 ATP synthase alpha/beta family, beta-barrel domain CPY64_15460 PF00306 ATP synthase alpha/beta chain, C terminal domain CPY64_15460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPY64_15465 PF00213 ATP synthase delta (OSCP) subunit CPY64_15470 PF00430 ATP synthase B/B' CF(0) CPY64_15475 PF00137 ATP synthase subunit C CPY64_15480 PF00119 ATP synthase A chain CPY64_15490 PF00378 Enoyl-CoA hydratase/isomerase CPY64_15505 PF01171 PP-loop family CPY64_15510 PF02441 Flavoprotein CPY64_15515 PF00462 Glutaredoxin CPY64_15520 PF17827 PrmC N-terminal domain CPY64_15520 PF05175 Methyltransferase small domain CPY64_15525 PF00472 RF-1 domain CPY64_15525 PF03462 PCRF domain CPY64_15530 PF01488 Shikimate / quinate 5-dehydrogenase CPY64_15530 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CPY64_15530 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CPY64_15560 PF00398 Ribosomal RNA adenine dimethylase CPY64_15570 PF00593 TonB dependent receptor CPY64_15570 PF07715 TonB-dependent Receptor Plug Domain CPY64_15585 PF00080 Copper/zinc superoxide dismutase (SODC) CPY64_15595 PF05145 Transition state regulatory protein AbrB CPY64_15600 PF01970 Tripartite tricarboxylate transporter TctA family CPY64_15615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_15615 PF00672 HAMP domain CPY64_15615 PF00512 His Kinase A (phospho-acceptor) domain CPY64_15620 PF00072 Response regulator receiver domain CPY64_15620 PF00486 Transcriptional regulatory protein, C terminal CPY64_15625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_15625 PF03466 LysR substrate binding domain CPY64_15630 PF08946 Osmosensory transporter coiled coil CPY64_15630 PF00083 Sugar (and other) transporter CPY64_15635 PF00795 Carbon-nitrogen hydrolase CPY64_15655 PF00005 ABC transporter CPY64_15680 PF01568 Molydopterin dinucleotide binding domain CPY64_15680 PF00384 Molybdopterin oxidoreductase CPY64_15680 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CPY64_15685 PF00384 Molybdopterin oxidoreductase CPY64_15685 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CPY64_15685 PF01568 Molydopterin dinucleotide binding domain CPY64_15690 PF09163 Formate dehydrogenase N, transmembrane CPY64_15690 PF12800 4Fe-4S binding domain CPY64_15690 PF13247 4Fe-4S dicluster domain CPY64_15695 PF01292 Prokaryotic cytochrome b561 CPY64_15700 PF04216 Protein involved in formate dehydrogenase formation CPY64_15705 PF03841 L-seryl-tRNA selenium transferase CPY64_15705 PF12390 Selenocysteine synthase N terminal CPY64_15710 PF09106 Elongation factor SelB, winged helix CPY64_15710 PF09107 Elongation factor SelB, winged helix CPY64_15710 PF00009 Elongation factor Tu GTP binding domain CPY64_15710 PF03144 Elongation factor Tu domain 2 CPY64_15720 PF01381 Helix-turn-helix CPY64_15725 PF00596 Class II Aldolase and Adducin N-terminal domain CPY64_15735 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_15740 PF00593 TonB dependent receptor CPY64_15740 PF07715 TonB-dependent Receptor Plug Domain CPY64_15750 PF07660 Secretin and TonB N terminus short domain CPY64_15750 PF07715 TonB-dependent Receptor Plug Domain CPY64_15750 PF00593 TonB dependent receptor CPY64_15755 PF00586 AIR synthase related protein, N-terminal domain CPY64_15755 PF02769 AIR synthase related protein, C-terminal domain CPY64_15770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_15770 PF03466 LysR substrate binding domain CPY64_15780 PF04205 FMN-binding domain CPY64_15780 PF12801 4Fe-4S binding domain CPY64_15785 PF18764 Nitrous oxide reductase propeller repeat CPY64_15785 PF18793 Nitrous oxide reductase propeller repeat 2 CPY64_15785 PF13473 Cupredoxin-like domain CPY64_15790 PF05048 Periplasmic copper-binding protein (NosD) CPY64_15795 PF00005 ABC transporter CPY64_15800 PF12679 ABC-2 family transporter protein CPY64_15815 PF00342 Phosphoglucose isomerase CPY64_15835 PF00106 short chain dehydrogenase CPY64_15880 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CPY64_15880 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CPY64_15880 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CPY64_15885 PF02350 UDP-N-acetylglucosamine 2-epimerase CPY64_15900 PF00005 ABC transporter CPY64_15905 PF01061 ABC-2 type transporter CPY64_15910 PF02563 Polysaccharide biosynthesis/export protein CPY64_15915 PF00155 Aminotransferase class I and II CPY64_15920 PF00698 Acyl transferase domain CPY64_15920 PF14765 Polyketide synthase dehydratase CPY64_15920 PF00550 Phosphopantetheine attachment site CPY64_15920 PF08240 Alcohol dehydrogenase GroES-like domain CPY64_15920 PF16197 Ketoacyl-synthetase C-terminal extension CPY64_15920 PF00109 Beta-ketoacyl synthase, N-terminal domain CPY64_15920 PF02801 Beta-ketoacyl synthase, C-terminal domain CPY64_15920 PF08659 KR domain CPY64_15925 PF02801 Beta-ketoacyl synthase, C-terminal domain CPY64_15925 PF16197 Ketoacyl-synthetase C-terminal extension CPY64_15925 PF00109 Beta-ketoacyl synthase, N-terminal domain CPY64_15925 PF00698 Acyl transferase domain CPY64_15925 PF08659 KR domain CPY64_15925 PF00550 Phosphopantetheine attachment site CPY64_15930 PF00860 Permease family CPY64_15935 PF00892 EamA-like transporter family CPY64_15940 PF00392 Bacterial regulatory proteins, gntR family CPY64_15940 PF00155 Aminotransferase class I and II CPY64_15945 PF00892 EamA-like transporter family CPY64_15965 PF00691 OmpA family CPY64_15965 PF13488 Glycine zipper CPY64_16050 PF04717 Type VI secretion system, phage-baseplate injector CPY64_16050 PF16671 Actin cross-linking domain CPY64_16060 PF00108 Thiolase, N-terminal domain CPY64_16060 PF02803 Thiolase, C-terminal domain CPY64_16065 PF00378 Enoyl-CoA hydratase/isomerase CPY64_16065 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CPY64_16065 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CPY64_16080 PF00005 ABC transporter CPY64_16085 PF02405 Permease MlaE CPY64_16090 PF02470 MlaD protein CPY64_16105 PF00005 ABC transporter CPY64_16110 PF01061 ABC-2 type transporter CPY64_16120 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CPY64_16125 PF01634 ATP phosphoribosyltransferase CPY64_16130 PF00815 Histidinol dehydrogenase CPY64_16135 PF00475 Imidazoleglycerol-phosphate dehydratase CPY64_16140 PF00117 Glutamine amidotransferase class-I CPY64_16145 PF00977 Histidine biosynthesis protein CPY64_16150 PF00977 Histidine biosynthesis protein CPY64_16155 PF01502 Phosphoribosyl-AMP cyclohydrolase CPY64_16160 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CPY64_16165 PF01230 HIT domain CPY64_16170 PF02416 mttA/Hcf106 family CPY64_16175 PF02416 mttA/Hcf106 family CPY64_16180 PF00902 Sec-independent protein translocase protein (TatC) CPY64_16185 PF13180 PDZ domain CPY64_16190 PF01784 NIF3 (NGG1p interacting factor 3) CPY64_16195 PF01741 Large-conductance mechanosensitive channel, MscL CPY64_16200 PF00355 Rieske [2Fe-2S] domain CPY64_16200 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CPY64_16205 PF00033 Cytochrome b/b6/petB CPY64_16205 PF00032 Cytochrome b(C-terminal)/b6/petD CPY64_16210 PF02167 Cytochrome C1 family CPY64_16215 PF00043 Glutathione S-transferase, C-terminal domain CPY64_16215 PF02798 Glutathione S-transferase, N-terminal domain CPY64_16220 PF04386 Stringent starvation protein B CPY64_16225 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_16230 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_16245 PF01070 FMN-dependent dehydrogenase CPY64_16250 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPY64_16250 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CPY64_16260 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_16270 PF03480 Bacterial extracellular solute-binding protein, family 7 CPY64_16275 PF01370 NAD dependent epimerase/dehydratase family CPY64_16280 PF01261 Xylose isomerase-like TIM barrel CPY64_16285 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CPY64_16285 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CPY64_16290 PF00920 Dehydratase family CPY64_16295 PF00392 Bacterial regulatory proteins, gntR family CPY64_16295 PF07729 FCD domain CPY64_16300 PF13404 AsnC-type helix-turn-helix domain CPY64_16300 PF01037 Lrp/AsnC ligand binding domain CPY64_16305 PF03301 Tryptophan 2,3-dioxygenase CPY64_16320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_16320 PF03466 LysR substrate binding domain CPY64_16325 PF02548 Ketopantoate hydroxymethyltransferase CPY64_16330 PF00248 Aldo/keto reductase family CPY64_16335 PF07690 Major Facilitator Superfamily CPY64_16340 PF00694 Aconitase C-terminal domain CPY64_16340 PF00330 Aconitase family (aconitate hydratase) CPY64_16345 PF07694 5TMR of 5TMR-LYT CPY64_16345 PF00990 Diguanylate cyclase, GGDEF domain CPY64_16350 PF13847 Methyltransferase domain CPY64_16360 PF00795 Carbon-nitrogen hydrolase CPY64_16375 PF07969 Amidohydrolase family CPY64_16380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_16380 PF03466 LysR substrate binding domain CPY64_16385 PF08946 Osmosensory transporter coiled coil CPY64_16385 PF00083 Sugar (and other) transporter CPY64_16395 PF05726 Pirin C-terminal cupin domain CPY64_16395 PF02678 Pirin CPY64_16400 PF00857 Isochorismatase family CPY64_16405 PF00857 Isochorismatase family CPY64_16410 PF02678 Pirin CPY64_16410 PF05726 Pirin C-terminal cupin domain CPY64_16415 PF03466 LysR substrate binding domain CPY64_16415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_16420 PF05532 CsbD-like CPY64_16425 PF04972 BON domain CPY64_16430 PF00743 Flavin-binding monooxygenase-like CPY64_16435 PF02954 Bacterial regulatory protein, Fis family CPY64_16435 PF00158 Sigma-54 interaction domain CPY64_16435 PF01590 GAF domain CPY64_16455 PF00593 TonB dependent receptor CPY64_16455 PF07715 TonB-dependent Receptor Plug Domain CPY64_16465 PF08281 Sigma-70, region 4 CPY64_16465 PF04542 Sigma-70 region 2 CPY64_16470 PF01380 SIS domain CPY64_16475 PF01037 Lrp/AsnC ligand binding domain CPY64_16485 PF12804 MobA-like NTP transferase domain CPY64_16485 PF14602 Hexapeptide repeat of succinyl-transferase CPY64_16485 PF00132 Bacterial transferase hexapeptide (six repeats) CPY64_16500 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CPY64_16500 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CPY64_16505 PF00115 Cytochrome C and Quinol oxidase polypeptide I CPY64_16515 PF00510 Cytochrome c oxidase subunit III CPY64_16535 PF02628 Cytochrome oxidase assembly protein CPY64_16540 PF01040 UbiA prenyltransferase family CPY64_16545 PF00999 Sodium/hydrogen exchanger family CPY64_16555 PF00593 TonB dependent receptor CPY64_16555 PF07715 TonB-dependent Receptor Plug Domain CPY64_16560 PF04542 Sigma-70 region 2 CPY64_16560 PF00140 Sigma-70 factor, region 1.2 CPY64_16560 PF04545 Sigma-70, region 4 CPY64_16565 PF00756 Putative esterase CPY64_16570 PF00107 Zinc-binding dehydrogenase CPY64_16570 PF08240 Alcohol dehydrogenase GroES-like domain CPY64_16575 PF13091 PLD-like domain CPY64_16580 PF03372 Endonuclease/Exonuclease/phosphatase family CPY64_16585 PF00152 tRNA synthetases class II (D, K and N) CPY64_16585 PF01336 OB-fold nucleic acid binding domain CPY64_16585 PF02938 GAD domain CPY64_16605 PF01040 UbiA prenyltransferase family CPY64_16610 PF00155 Aminotransferase class I and II CPY64_16620 PF01979 Amidohydrolase family CPY64_16640 PF00221 Aromatic amino acid lyase CPY64_16645 PF01175 Urocanase Rossmann-like domain CPY64_16645 PF17392 Urocanase C-terminal domain CPY64_16645 PF17391 Urocanase N-terminal domain CPY64_16650 PF07702 UTRA domain CPY64_16650 PF00392 Bacterial regulatory proteins, gntR family CPY64_16665 PF00797 N-acetyltransferase CPY64_16670 PF00085 Thioredoxin CPY64_16675 PF07690 Major Facilitator Superfamily CPY64_16685 PF13411 MerR HTH family regulatory protein CPY64_16690 PF07690 Major Facilitator Superfamily CPY64_16715 PF02798 Glutathione S-transferase, N-terminal domain CPY64_16715 PF00043 Glutathione S-transferase, C-terminal domain CPY64_16720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_16720 PF03466 LysR substrate binding domain CPY64_16725 PF00042 Globin CPY64_16725 PF00175 Oxidoreductase NAD-binding domain CPY64_16725 PF00970 Oxidoreductase FAD-binding domain CPY64_16730 PF00355 Rieske [2Fe-2S] domain CPY64_16735 PF03466 LysR substrate binding domain CPY64_16735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_16740 PF00155 Aminotransferase class I and II CPY64_16745 PF13350 Tyrosine phosphatase family CPY64_16750 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CPY64_16750 PF10996 Beta-Casp domain CPY64_16750 PF00753 Metallo-beta-lactamase superfamily CPY64_16770 PF02423 Ornithine cyclodeaminase/mu-crystallin family CPY64_16775 PF00175 Oxidoreductase NAD-binding domain CPY64_16775 PF00970 Oxidoreductase FAD-binding domain CPY64_16775 PF00111 2Fe-2S iron-sulfur cluster binding domain CPY64_16795 PF00175 Oxidoreductase NAD-binding domain CPY64_16795 PF00970 Oxidoreductase FAD-binding domain CPY64_16795 PF00111 2Fe-2S iron-sulfur cluster binding domain CPY64_16800 PF03928 Haem-degrading CPY64_16805 PF00171 Aldehyde dehydrogenase family CPY64_16830 PF07729 FCD domain CPY64_16830 PF00392 Bacterial regulatory proteins, gntR family CPY64_16835 PF00440 Bacterial regulatory proteins, tetR family CPY64_16840 PF07690 Major Facilitator Superfamily CPY64_16845 PF00210 Ferritin-like domain CPY64_16855 PF07690 Major Facilitator Superfamily CPY64_16860 PF01042 Endoribonuclease L-PSP CPY64_16865 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_16870 PF01557 Fumarylacetoacetate (FAA) hydrolase family CPY64_16875 PF07729 FCD domain CPY64_16875 PF00392 Bacterial regulatory proteins, gntR family CPY64_16880 PF00436 Single-strand binding protein family CPY64_16885 PF07690 Major Facilitator Superfamily CPY64_16890 PF17755 UvrA DNA-binding domain CPY64_16890 PF17760 UvrA interaction domain CPY64_16895 PF01966 HD domain CPY64_16895 PF13286 Phosphohydrolase-associated domain CPY64_16900 PF01761 3-dehydroquinate synthase CPY64_16905 PF01202 Shikimate kinase CPY64_16910 PF00912 Transglycosylase CPY64_16910 PF17092 Penicillin-binding protein OB-like domain CPY64_16910 PF00905 Penicillin binding protein transpeptidase domain CPY64_16920 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CPY64_16920 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CPY64_16925 PF00563 EAL domain CPY64_16925 PF08448 PAS fold CPY64_16925 PF00990 Diguanylate cyclase, GGDEF domain CPY64_16935 PF02371 Transposase IS116/IS110/IS902 family CPY64_16935 PF01548 Transposase CPY64_16945 PF01578 Cytochrome C assembly protein CPY64_16950 PF05140 ResB-like family CPY64_16955 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPY64_16960 PF01926 50S ribosome-binding GTPase CPY64_16965 PF00490 Delta-aminolevulinic acid dehydratase CPY64_16970 PF11412 Disulphide bond corrector protein DsbC CPY64_16970 PF02683 Cytochrome C biogenesis protein transmembrane region CPY64_16975 PF03091 CutA1 divalent ion tolerance protein CPY64_16980 PF12833 Helix-turn-helix domain CPY64_16980 PF14525 AraC-binding-like domain CPY64_16990 PF00296 Luciferase-like monooxygenase CPY64_16995 PF01196 Ribosomal protein L17 CPY64_17000 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CPY64_17000 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CPY64_17000 PF01000 RNA polymerase Rpb3/RpoA insert domain CPY64_17005 PF01479 S4 domain CPY64_17005 PF00163 Ribosomal protein S4/S9 N-terminal domain CPY64_17010 PF00411 Ribosomal protein S11 CPY64_17015 PF00416 Ribosomal protein S13/S18 CPY64_17020 PF00444 Ribosomal protein L36 CPY64_17025 PF01176 Translation initiation factor 1A / IF-1 CPY64_17030 PF00344 SecY translocase CPY64_17035 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CPY64_17040 PF00327 Ribosomal protein L30p/L7e CPY64_17045 PF00333 Ribosomal protein S5, N-terminal domain CPY64_17045 PF03719 Ribosomal protein S5, C-terminal domain CPY64_17050 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CPY64_17055 PF00347 Ribosomal protein L6 CPY64_17060 PF00410 Ribosomal protein S8 CPY64_17065 PF00253 Ribosomal protein S14p/S29e CPY64_17070 PF00673 ribosomal L5P family C-terminus CPY64_17070 PF00281 Ribosomal protein L5 CPY64_17075 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CPY64_17080 PF00238 Ribosomal protein L14p/L23e CPY64_17105 PF00529 HlyD membrane-fusion protein of T1SS CPY64_17110 PF00005 ABC transporter CPY64_17110 PF00664 ABC transporter transmembrane region CPY64_17110 PF03412 Peptidase C39 family CPY64_17120 PF02321 Outer membrane efflux protein CPY64_17125 PF05598 Transposase domain (DUF772) CPY64_17125 PF01609 Transposase DDE domain CPY64_17130 PF00171 Aldehyde dehydrogenase family CPY64_17140 PF02770 Acyl-CoA dehydrogenase, middle domain CPY64_17140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CPY64_17140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CPY64_17140 PF09317 Domain of unknown function (DUF1974) CPY64_17145 PF02803 Thiolase, C-terminal domain CPY64_17145 PF00108 Thiolase, N-terminal domain CPY64_17150 PF00378 Enoyl-CoA hydratase/isomerase CPY64_17150 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CPY64_17150 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CPY64_17155 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CPY64_17170 PF13193 AMP-binding enzyme C-terminal domain CPY64_17170 PF00501 AMP-binding enzyme CPY64_17175 PF00175 Oxidoreductase NAD-binding domain CPY64_17175 PF00258 Flavodoxin CPY64_17175 PF00667 FAD binding domain CPY64_17180 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CPY64_17180 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CPY64_17185 PF10414 Sirohaem synthase dimerisation region CPY64_17185 PF14824 Sirohaem biosynthesis protein central CPY64_17185 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPY64_17190 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_17200 PF00005 ABC transporter CPY64_17215 PF12852 Cupin CPY64_17215 PF12833 Helix-turn-helix domain CPY64_17220 PF00366 Ribosomal protein S17 CPY64_17225 PF00831 Ribosomal L29 protein CPY64_17230 PF00252 Ribosomal protein L16p/L10e CPY64_17235 PF07650 KH domain CPY64_17235 PF00189 Ribosomal protein S3, C-terminal domain CPY64_17240 PF00237 Ribosomal protein L22p/L17e CPY64_17245 PF00203 Ribosomal protein S19 CPY64_17250 PF00181 Ribosomal Proteins L2, RNA binding domain CPY64_17250 PF03947 Ribosomal Proteins L2, C-terminal domain CPY64_17255 PF00276 Ribosomal protein L23 CPY64_17260 PF00573 Ribosomal protein L4/L1 family CPY64_17265 PF00297 Ribosomal protein L3 CPY64_17270 PF00571 CBS domain CPY64_17270 PF00005 ABC transporter CPY64_17275 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_17285 PF00338 Ribosomal protein S10p/S20e CPY64_17290 PF00009 Elongation factor Tu GTP binding domain CPY64_17290 PF03144 Elongation factor Tu domain 2 CPY64_17290 PF03143 Elongation factor Tu C-terminal domain CPY64_17295 PF00009 Elongation factor Tu GTP binding domain CPY64_17295 PF03144 Elongation factor Tu domain 2 CPY64_17295 PF14492 Elongation Factor G, domain II CPY64_17295 PF00679 Elongation factor G C-terminus CPY64_17295 PF03764 Elongation factor G, domain IV CPY64_17300 PF00177 Ribosomal protein S7p/S5e CPY64_17305 PF00164 Ribosomal protein S12/S23 CPY64_17310 PF00072 Response regulator receiver domain CPY64_17310 PF00486 Transcriptional regulatory protein, C terminal CPY64_17320 PF00672 HAMP domain CPY64_17320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_17320 PF00512 His Kinase A (phospho-acceptor) domain CPY64_17335 PF00127 Copper binding proteins, plastocyanin/azurin family CPY64_17340 PF05000 RNA polymerase Rpb1, domain 4 CPY64_17340 PF04997 RNA polymerase Rpb1, domain 1 CPY64_17340 PF04998 RNA polymerase Rpb1, domain 5 CPY64_17340 PF04983 RNA polymerase Rpb1, domain 3 CPY64_17340 PF00623 RNA polymerase Rpb1, domain 2 CPY64_17345 PF04561 RNA polymerase Rpb2, domain 2 CPY64_17345 PF04565 RNA polymerase Rpb2, domain 3 CPY64_17345 PF04563 RNA polymerase beta subunit CPY64_17345 PF04560 RNA polymerase Rpb2, domain 7 CPY64_17345 PF10385 RNA polymerase beta subunit external 1 domain CPY64_17345 PF00562 RNA polymerase Rpb2, domain 6 CPY64_17350 PF00542 Ribosomal protein L7/L12 C-terminal domain CPY64_17350 PF16320 Ribosomal protein L7/L12 dimerisation domain CPY64_17355 PF00466 Ribosomal protein L10 CPY64_17365 PF00687 Ribosomal protein L1p/L10e family CPY64_17370 PF00298 Ribosomal protein L11, RNA binding domain CPY64_17370 PF03946 Ribosomal protein L11, N-terminal domain CPY64_17375 PF02357 Transcription termination factor nusG CPY64_17375 PF00467 KOW motif CPY64_17390 PF00009 Elongation factor Tu GTP binding domain CPY64_17390 PF03143 Elongation factor Tu C-terminal domain CPY64_17390 PF03144 Elongation factor Tu domain 2 CPY64_17415 PF17762 HTH domain found in ParB protein CPY64_17415 PF02195 ParB-like nuclease domain CPY64_17420 PF13614 AAA domain CPY64_17425 PF02527 rRNA small subunit methyltransferase G CPY64_17430 PF13932 GidA associated domain CPY64_17430 PF01134 Glucose inhibited division protein A CPY64_17435 PF00155 Aminotransferase class I and II CPY64_17440 PF00149 Calcineurin-like phosphoesterase CPY64_17445 PF00990 Diguanylate cyclase, GGDEF domain CPY64_17450 PF02666 Phosphatidylserine decarboxylase CPY64_17460 PF13291 ACT domain CPY64_17460 PF00291 Pyridoxal-phosphate dependent enzyme CPY64_17465 PF05598 Transposase domain (DUF772) CPY64_17465 PF01609 Transposase DDE domain CPY64_17475 PF02567 Phenazine biosynthesis-like protein CPY64_17510 PF01926 50S ribosome-binding GTPase CPY64_17510 PF12631 MnmE helical domain CPY64_17510 PF10396 GTP-binding protein TrmE N-terminus CPY64_17520 PF07883 Cupin domain CPY64_17520 PF01381 Helix-turn-helix CPY64_17525 PF07687 Peptidase dimerisation domain CPY64_17525 PF01546 Peptidase family M20/M25/M40 CPY64_17530 PF00291 Pyridoxal-phosphate dependent enzyme CPY64_17535 PF02423 Ornithine cyclodeaminase/mu-crystallin family CPY64_17550 PF13458 Periplasmic binding protein CPY64_17555 PF02653 Branched-chain amino acid transport system / permease component CPY64_17565 PF00005 ABC transporter CPY64_17565 PF12399 Branched-chain amino acid ATP-binding cassette transporter CPY64_17570 PF00005 ABC transporter CPY64_17575 PF00561 alpha/beta hydrolase fold CPY64_17585 PF00857 Isochorismatase family CPY64_17590 PF01494 FAD binding domain CPY64_17610 PF06628 Catalase-related immune-responsive CPY64_17610 PF00199 Catalase CPY64_17615 PF02096 60Kd inner membrane protein CPY64_17615 PF14849 YidC periplasmic domain CPY64_17620 PF01809 Putative membrane protein insertion efficiency factor CPY64_17625 PF00825 Ribonuclease P CPY64_17630 PF00468 Ribosomal protein L34 CPY64_17635 PF08299 Bacterial dnaA protein helix-turn-helix CPY64_17635 PF00308 Bacterial dnaA protein CPY64_17635 PF11638 DnaA N-terminal domain CPY64_17640 PF00712 DNA polymerase III beta subunit, N-terminal domain CPY64_17640 PF02768 DNA polymerase III beta subunit, C-terminal domain CPY64_17640 PF02767 DNA polymerase III beta subunit, central domain CPY64_17645 PF18053 DNA gyrase B subunit insert domain CPY64_17645 PF00204 DNA gyrase B CPY64_17645 PF00986 DNA gyrase B subunit, carboxyl terminus CPY64_17645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPY64_17645 PF01751 Toprim domain CPY64_17650 PF01479 S4 domain CPY64_17650 PF00849 RNA pseudouridylate synthase CPY64_17665 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_17695 PF13609 Gram-negative porin CPY64_17700 PF00701 Dihydrodipicolinate synthetase family CPY64_17720 PF01266 FAD dependent oxidoreductase CPY64_17730 PF04324 BFD-like [2Fe-2S] binding domain CPY64_17730 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPY64_17735 PF00378 Enoyl-CoA hydratase/isomerase CPY64_17740 PF03060 Nitronate monooxygenase CPY64_17745 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_17750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CPY64_17750 PF02770 Acyl-CoA dehydrogenase, middle domain CPY64_17750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CPY64_17760 PF02515 CoA-transferase family III CPY64_17770 PF02515 CoA-transferase family III CPY64_17775 PF07729 FCD domain CPY64_17775 PF00392 Bacterial regulatory proteins, gntR family CPY64_17780 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_17790 PF00111 2Fe-2S iron-sulfur cluster binding domain CPY64_17790 PF00175 Oxidoreductase NAD-binding domain CPY64_17800 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CPY64_17800 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CPY64_17805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_17805 PF03466 LysR substrate binding domain CPY64_17815 PF03480 Bacterial extracellular solute-binding protein, family 7 CPY64_17825 PF02653 Branched-chain amino acid transport system / permease component CPY64_17830 PF02653 Branched-chain amino acid transport system / permease component CPY64_17830 PF11862 Domain of unknown function (DUF3382) CPY64_17835 PF00005 ABC transporter CPY64_17840 PF00501 AMP-binding enzyme CPY64_17840 PF13193 AMP-binding enzyme C-terminal domain CPY64_17850 PF00561 alpha/beta hydrolase fold CPY64_17850 PF00364 Biotin-requiring enzyme CPY64_17855 PF00392 Bacterial regulatory proteins, gntR family CPY64_17855 PF00155 Aminotransferase class I and II CPY64_17860 PF00378 Enoyl-CoA hydratase/isomerase CPY64_17865 PF17645 Arylmalonate decarboxylase CPY64_17870 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_17880 PF00892 EamA-like transporter family CPY64_17885 PF03466 LysR substrate binding domain CPY64_17885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_17895 PF00005 ABC transporter CPY64_17895 PF08402 TOBE domain CPY64_17915 PF02492 CobW/HypB/UreG, nucleotide-binding domain CPY64_17915 PF07683 Cobalamin synthesis protein cobW C-terminal domain CPY64_17920 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_17945 PF00884 Sulfatase CPY64_17945 PF16347 Domain of unknown function (DUF4976) CPY64_17960 PF01047 MarR family CPY64_17975 PF12802 MarR family CPY64_17985 PF01494 FAD binding domain CPY64_17990 PF07883 Cupin domain CPY64_17995 PF01557 Fumarylacetoacetate (FAA) hydrolase family CPY64_18000 PF00795 Carbon-nitrogen hydrolase CPY64_18005 PF04199 Putative cyclase CPY64_18010 PF00970 Oxidoreductase FAD-binding domain CPY64_18010 PF00111 2Fe-2S iron-sulfur cluster binding domain CPY64_18010 PF00175 Oxidoreductase NAD-binding domain CPY64_18015 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CPY64_18015 PF00355 Rieske [2Fe-2S] domain CPY64_18020 PF00866 Ring hydroxylating beta subunit CPY64_18025 PF00501 AMP-binding enzyme CPY64_18025 PF13193 AMP-binding enzyme C-terminal domain CPY64_18050 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_18080 PF01613 Flavin reductase like domain CPY64_18090 PF12833 Helix-turn-helix domain CPY64_18100 PF00005 ABC transporter CPY64_18110 PF02261 Aspartate decarboxylase CPY64_18115 PF07715 TonB-dependent Receptor Plug Domain CPY64_18115 PF00593 TonB dependent receptor CPY64_18125 PF08281 Sigma-70, region 4 CPY64_18125 PF04542 Sigma-70 region 2 CPY64_18130 PF00005 ABC transporter CPY64_18130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPY64_18135 PF00005 ABC transporter CPY64_18135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPY64_18140 PF12911 N-terminal TM domain of oligopeptide transport permease C CPY64_18140 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_18150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPY64_18155 PF11799 impB/mucB/samB family C-terminal domain CPY64_18155 PF00817 impB/mucB/samB family CPY64_18160 PF08281 Sigma-70, region 4 CPY64_18160 PF04542 Sigma-70 region 2 CPY64_18165 PF16220 Domain of unknown function (DUF4880) CPY64_18165 PF04773 FecR protein CPY64_18170 PF07715 TonB-dependent Receptor Plug Domain CPY64_18170 PF00593 TonB dependent receptor CPY64_18175 PF11954 Domain of unknown function (DUF3471) CPY64_18175 PF00144 Beta-lactamase CPY64_18180 PF00202 Aminotransferase class-III CPY64_18195 PF03180 NLPA lipoprotein CPY64_18200 PF03180 NLPA lipoprotein CPY64_18205 PF00005 ABC transporter CPY64_18205 PF09383 NIL domain CPY64_18210 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_18215 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CPY64_18215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CPY64_18220 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CPY64_18220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CPY64_18220 PF02770 Acyl-CoA dehydrogenase, middle domain CPY64_18225 PF03180 NLPA lipoprotein CPY64_18230 PF00296 Luciferase-like monooxygenase CPY64_18235 PF03180 NLPA lipoprotein CPY64_18245 PF02796 Helix-turn-helix domain of resolvase CPY64_18245 PF00239 Resolvase, N terminal domain CPY64_18265 PF00296 Luciferase-like monooxygenase CPY64_18270 PF03358 NADPH-dependent FMN reductase CPY64_18280 PF12833 Helix-turn-helix domain CPY64_18280 PF14525 AraC-binding-like domain CPY64_18295 PF03466 LysR substrate binding domain CPY64_18295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_18300 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CPY64_18300 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CPY64_18305 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_18315 PF01274 Malate synthase CPY64_18320 PF01048 Phosphorylase superfamily CPY64_18320 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CPY64_18330 PF03480 Bacterial extracellular solute-binding protein, family 7 CPY64_18335 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_18350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPY64_18350 PF00205 Thiamine pyrophosphate enzyme, central domain CPY64_18350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CPY64_18355 PF03480 Bacterial extracellular solute-binding protein, family 7 CPY64_18365 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_18375 PF01751 Toprim domain CPY64_18375 PF01131 DNA topoisomerase CPY64_18385 PF04361 Protein of unknown function (DUF494) CPY64_18390 PF00749 tRNA synthetases class I (E and Q), catalytic domain CPY64_18395 PF02785 Biotin carboxylase C-terminal domain CPY64_18395 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPY64_18395 PF00289 Biotin carboxylase, N-terminal domain CPY64_18395 PF00364 Biotin-requiring enzyme CPY64_18400 PF01039 Carboxyl transferase domain CPY64_18405 PF02803 Thiolase, C-terminal domain CPY64_18405 PF00108 Thiolase, N-terminal domain CPY64_18410 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CPY64_18415 PF02770 Acyl-CoA dehydrogenase, middle domain CPY64_18415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CPY64_18415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CPY64_18420 PF09278 MerR, DNA binding CPY64_18420 PF00376 MerR family regulatory protein CPY64_18435 PF01053 Cys/Met metabolism PLP-dependent enzyme CPY64_18440 PF00085 Thioredoxin CPY64_18440 PF01323 DSBA-like thioredoxin domain CPY64_18450 PF00750 tRNA synthetases class I (R) CPY64_18450 PF05746 DALR anticodon binding domain CPY64_18450 PF03485 Arginyl tRNA synthetase N terminal domain CPY64_18475 PF08502 LeuA allosteric (dimerisation) domain CPY64_18475 PF00682 HMGL-like CPY64_18485 PF00309 Sigma-54 factor, Activator interacting domain (AID) CPY64_18485 PF04963 Sigma-54 factor, core binding domain CPY64_18485 PF04552 Sigma-54, DNA binding domain CPY64_18490 PF00593 TonB dependent receptor CPY64_18490 PF07715 TonB-dependent Receptor Plug Domain CPY64_18495 PF00694 Aconitase C-terminal domain CPY64_18500 PF00330 Aconitase family (aconitate hydratase) CPY64_18505 PF00682 HMGL-like CPY64_18510 PF02515 CoA-transferase family III CPY64_18515 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_18525 PF03480 Bacterial extracellular solute-binding protein, family 7 CPY64_18530 PF00857 Isochorismatase family CPY64_18535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_18535 PF03466 LysR substrate binding domain CPY64_18545 PF00210 Ferritin-like domain CPY64_18555 PF16658 Class II release factor RF3, C-terminal domain CPY64_18555 PF03144 Elongation factor Tu domain 2 CPY64_18555 PF00009 Elongation factor Tu GTP binding domain CPY64_18560 PF01810 LysE type translocator CPY64_18565 PF00270 DEAD/DEAH box helicase CPY64_18565 PF00271 Helicase conserved C-terminal domain CPY64_18575 PF04536 TPM domain CPY64_18590 PF10396 GTP-binding protein TrmE N-terminus CPY64_18590 PF01926 50S ribosome-binding GTPase CPY64_18590 PF12631 MnmE helical domain CPY64_18605 PF01425 Amidase CPY64_18610 PF03466 LysR substrate binding domain CPY64_18610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_18620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_18620 PF03466 LysR substrate binding domain CPY64_18640 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_18650 PF02405 Permease MlaE CPY64_18655 PF00005 ABC transporter CPY64_18660 PF02470 MlaD protein CPY64_18660 PF03886 ABC-type transport auxiliary lipoprotein component CPY64_18675 PF13419 Haloacid dehalogenase-like hydrolase CPY64_18680 PF03480 Bacterial extracellular solute-binding protein, family 7 CPY64_18690 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPY64_18705 PF00501 AMP-binding enzyme CPY64_18705 PF13193 AMP-binding enzyme C-terminal domain CPY64_18710 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_18715 PF00392 Bacterial regulatory proteins, gntR family CPY64_18715 PF07729 FCD domain CPY64_18720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPY64_18720 PF03466 LysR substrate binding domain CPY64_18725 PF01266 FAD dependent oxidoreductase CPY64_18735 PF02646 RmuC family CPY64_18740 PF01381 Helix-turn-helix CPY64_18750 PF00563 EAL domain CPY64_18750 PF00990 Diguanylate cyclase, GGDEF domain CPY64_18750 PF03707 Bacterial signalling protein N terminal repeat CPY64_18755 PF00708 Acylphosphatase CPY64_18765 PF16868 NMT1-like family CPY64_18775 PF00849 RNA pseudouridylate synthase CPY64_18780 PF17763 Glutaminase/Asparaginase C-terminal domain CPY64_18780 PF00710 Asparaginase, N-terminal CPY64_18785 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_18790 PF00528 Binding-protein-dependent transport system inner membrane component CPY64_18795 PF00497 Bacterial extracellular solute-binding proteins, family 3 CPY64_18800 PF00005 ABC transporter CPY64_18805 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CPY64_18805 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CPY64_18810 PF01168 Alanine racemase, N-terminal domain CPY64_18815 PF03401 Tripartite tricarboxylate transporter family receptor CPY64_18825 PF00501 AMP-binding enzyme CPY64_18830 PF12399 Branched-chain amino acid ATP-binding cassette transporter CPY64_18830 PF00005 ABC transporter CPY64_18835 PF02653 Branched-chain amino acid transport system / permease component CPY64_18850 PF00005 ABC transporter CPY64_18860 PF00497 Bacterial extracellular solute-binding proteins, family 3 CPY64_18870 PF00682 HMGL-like CPY64_18875 PF02481 DNA recombination-mediator protein A CPY64_18875 PF17782 DprA winged helix domain CPY64_18880 PF01327 Polypeptide deformylase CPY64_18885 PF00551 Formyl transferase CPY64_18885 PF02911 Formyl transferase, C-terminal domain CPY64_18890 PF00892 EamA-like transporter family CPY64_18895 PF01425 Amidase CPY64_18905 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component