AFA_00040	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
AFA_00040	PWY-7494	choline degradation IV
AFA_00055	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AFA_00085	PWY-5103	L-isoleucine biosynthesis III
AFA_00085	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFA_00225	PWY-5381	pyridine nucleotide cycling (plants)
AFA_00225	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AFA_00225	PWY-6596	adenosine nucleotides degradation I
AFA_00225	PWY-6606	guanosine nucleotides degradation II
AFA_00225	PWY-6607	guanosine nucleotides degradation I
AFA_00225	PWY-6608	guanosine nucleotides degradation III
AFA_00225	PWY-7185	UTP and CTP dephosphorylation I
AFA_00225	PWY-7821	AFA_00225
AFA_00290	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AFA_00290	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AFA_00290	PWY-7717	AFA_00290
AFA_00290	PWY-7733	AFA_00290
AFA_00290	PWY-7734	AFA_00290
AFA_00290	PWY-7765	AFA_00290
AFA_00405	PWY-5155	&beta;-alanine biosynthesis III
AFA_00565	PWY-5381	pyridine nucleotide cycling (plants)
AFA_00580	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFA_00580	PWY-7118	chitin degradation to ethanol
AFA_00580	PWY-7294	xylose degradation IV
AFA_00580	PWY-7295	L-arabinose degradation IV
AFA_00580	PWY-7854	AFA_00580
AFA_00590	PWY-6617	adenosine nucleotides degradation III
AFA_00615	PWY-5101	L-isoleucine biosynthesis II
AFA_00615	PWY-5103	L-isoleucine biosynthesis III
AFA_00615	PWY-5104	L-isoleucine biosynthesis IV
AFA_00615	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AFA_00615	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AFA_00615	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AFA_00615	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFA_00675	PWY-4381	fatty acid biosynthesis initiation I
AFA_00675	PWY-5743	3-hydroxypropanoate cycle
AFA_00675	PWY-5744	glyoxylate assimilation
AFA_00675	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AFA_00675	PWY-6722	candicidin biosynthesis
AFA_00750	PWY-6871	3-methylbutanol biosynthesis
AFA_00780	PWY-6871	3-methylbutanol biosynthesis
AFA_01070	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AFA_01130	PWY-5074	mevalonate degradation
AFA_01155	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AFA_01195	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
AFA_01205	PWY-3801	sucrose degradation II (sucrose synthase)
AFA_01205	PWY-6527	stachyose degradation
AFA_01205	PWY-7238	sucrose biosynthesis II
AFA_01205	PWY-7343	UDP-glucose biosynthesis
AFA_01205	PWY-7817	AFA_01205
AFA_01210	PWY-3961	phosphopantothenate biosynthesis II
AFA_01215	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AFA_01215	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AFA_01225	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFA_01225	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFA_01240	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AFA_01240	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AFA_01250	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AFA_01250	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AFA_01330	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFA_01330	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFA_01330	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFA_01335	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFA_01335	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFA_01335	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFA_01355	PWY-5958	acridone alkaloid biosynthesis
AFA_01355	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AFA_01355	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AFA_01360	PWY-5958	acridone alkaloid biosynthesis
AFA_01360	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AFA_01360	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AFA_01365	PWY-181	photorespiration
AFA_01375	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AFA_01375	PWY-5723	Rubisco shunt
AFA_01415	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AFA_01425	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AFA_01425	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AFA_01425	PWY-6406	salicylate biosynthesis I
AFA_01455	PWY-6012	acyl carrier protein metabolism I
AFA_01455	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AFA_01455	PWY-6289	petrobactin biosynthesis
AFA_01510	PWY-1361	benzoyl-CoA degradation I (aerobic)
AFA_01510	PWY-5109	2-methylbutanoate biosynthesis
AFA_01510	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AFA_01510	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AFA_01510	PWY-5177	glutaryl-CoA degradation
AFA_01510	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AFA_01510	PWY-6435	4-hydroxybenzoate biosynthesis V
AFA_01510	PWY-6583	pyruvate fermentation to butanol I
AFA_01510	PWY-6863	pyruvate fermentation to hexanol
AFA_01510	PWY-6883	pyruvate fermentation to butanol II
AFA_01510	PWY-6944	androstenedione degradation
AFA_01510	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AFA_01510	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AFA_01510	PWY-7007	methyl ketone biosynthesis
AFA_01510	PWY-7046	4-coumarate degradation (anaerobic)
AFA_01510	PWY-7094	fatty acid salvage
AFA_01510	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AFA_01510	PWY-735	jasmonic acid biosynthesis
AFA_01510	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AFA_01510	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AFA_01510	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AFA_01510	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AFA_01510	PWY-7726	AFA_01510
AFA_01510	PWY-7778	AFA_01510
AFA_01510	PWY-7779	AFA_01510
AFA_01515	PWY-5667	CDP-diacylglycerol biosynthesis I
AFA_01515	PWY-5981	CDP-diacylglycerol biosynthesis III
AFA_01515	PWY-7902	AFA_01515
AFA_01585	PWY-4381	fatty acid biosynthesis initiation I
AFA_01620	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFA_01620	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFA_01705	PWY-6967	methylamine degradation I
AFA_01720	PWY-6967	methylamine degradation I
AFA_01740	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AFA_01740	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AFA_01740	PWY-7766	AFA_01740
AFA_01780	PWY-723	alkylnitronates degradation
AFA_01790	PWY-1361	benzoyl-CoA degradation I (aerobic)
AFA_01790	PWY-5109	2-methylbutanoate biosynthesis
AFA_01790	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AFA_01790	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AFA_01790	PWY-5177	glutaryl-CoA degradation
AFA_01790	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AFA_01790	PWY-6435	4-hydroxybenzoate biosynthesis V
AFA_01790	PWY-6583	pyruvate fermentation to butanol I
AFA_01790	PWY-6863	pyruvate fermentation to hexanol
AFA_01790	PWY-6883	pyruvate fermentation to butanol II
AFA_01790	PWY-6944	androstenedione degradation
AFA_01790	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AFA_01790	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AFA_01790	PWY-7007	methyl ketone biosynthesis
AFA_01790	PWY-7046	4-coumarate degradation (anaerobic)
AFA_01790	PWY-7094	fatty acid salvage
AFA_01790	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AFA_01790	PWY-735	jasmonic acid biosynthesis
AFA_01790	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AFA_01790	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AFA_01790	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AFA_01790	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AFA_01790	PWY-7726	AFA_01790
AFA_01790	PWY-7778	AFA_01790
AFA_01790	PWY-7779	AFA_01790
AFA_01815	PWY-6840	homoglutathione biosynthesis
AFA_01815	PWY-7255	ergothioneine biosynthesis I (bacteria)
AFA_01835	PWY-5344	L-homocysteine biosynthesis
AFA_01870	PWY-5279	sulfite oxidation II
AFA_02005	PWY-2941	L-lysine biosynthesis II
AFA_02005	PWY-5097	L-lysine biosynthesis VI
AFA_02020	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AFA_02020	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
AFA_02025	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AFA_02035	PWY-2201	folate transformations I
AFA_02035	PWY-3841	folate transformations II
AFA_02075	PWY-1622	formaldehyde assimilation I (serine pathway)
AFA_02075	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AFA_02075	PWY-5913	TCA cycle VI (obligate autotrophs)
AFA_02075	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFA_02075	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
AFA_02075	PWY-6549	L-glutamine biosynthesis III
AFA_02075	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AFA_02075	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AFA_02075	PWY-7124	ethylene biosynthesis V (engineered)
AFA_02080	PWY-5101	L-isoleucine biosynthesis II
AFA_02080	PWY-5103	L-isoleucine biosynthesis III
AFA_02080	PWY-5104	L-isoleucine biosynthesis IV
AFA_02080	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFA_02105	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AFA_02210	PWY-5386	methylglyoxal degradation I
AFA_02210	PWY-7425	2-chloroacrylate degradation I
AFA_02245	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AFA_02245	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AFA_02355	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AFA_02535	PWY-5692	allantoin degradation to glyoxylate II
AFA_02535	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
AFA_02595	PWY-3841	folate transformations II
AFA_02595	PWY-6614	tetrahydrofolate biosynthesis
AFA_02600	PWY-3841	folate transformations II
AFA_02600	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFA_02600	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFA_02600	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AFA_02600	PWY-7199	pyrimidine deoxyribonucleosides salvage
AFA_02600	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AFA_02610	PWY-3781	aerobic respiration I (cytochrome c)
AFA_02610	PWY-4521	arsenite oxidation I (respiratory)
AFA_02610	PWY-6692	Fe(II) oxidation
AFA_02610	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AFA_02640	PWY-1042	glycolysis IV (plant cytosol)
AFA_02640	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AFA_02640	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFA_02640	PWY-5723	Rubisco shunt
AFA_02640	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFA_02640	PWY-6886	1-butanol autotrophic biosynthesis
AFA_02640	PWY-6901	superpathway of glucose and xylose degradation
AFA_02640	PWY-7003	glycerol degradation to butanol
AFA_02640	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AFA_02640	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AFA_02695	PWY-5694	allantoin degradation to glyoxylate I
AFA_02695	PWY-5705	allantoin degradation to glyoxylate III
AFA_02700	PWY-5691	urate degradation to allantoin I
AFA_02700	PWY-7394	urate degradation to allantoin II
AFA_02700	PWY-7849	AFA_02700
AFA_02710	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFA_02710	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFA_02710	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFA_02745	PWY-6749	CMP-legionaminate biosynthesis I
AFA_02800	PWY-7560	methylerythritol phosphate pathway II
AFA_02820	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AFA_02870	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AFA_02870	PWY-5743	3-hydroxypropanoate cycle
AFA_02870	PWY-5744	glyoxylate assimilation
AFA_02870	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AFA_02870	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFA_02870	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AFA_02870	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AFA_02880	PWY-5694	allantoin degradation to glyoxylate I
AFA_02880	PWY-5705	allantoin degradation to glyoxylate III
AFA_03040	PWY-1881	formate oxidation to CO<sub>2</sub>
AFA_03040	PWY-5497	purine nucleobases degradation II (anaerobic)
AFA_03040	PWY-6696	oxalate degradation III
AFA_03040	PWY-7985	AFA_03040
AFA_03060	PWY-6823	molybdenum cofactor biosynthesis
AFA_03065	PWY-5964	guanylyl molybdenum cofactor biosynthesis
AFA_03065	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
AFA_03070	PWY-6823	molybdenum cofactor biosynthesis
AFA_03080	PWY-6823	molybdenum cofactor biosynthesis
AFA_03080	PWY-7887	AFA_03080
AFA_03090	PWY-6823	molybdenum cofactor biosynthesis
AFA_03135	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AFA_03230	PWY-7799	AFA_03230
AFA_03230	PWY-7800	AFA_03230
AFA_03250	PWY-6700	queuosine biosynthesis
AFA_03255	PWY-6700	queuosine biosynthesis
AFA_03260	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFA_03260	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFA_03265	PWY-7183	pyrimidine nucleobases salvage I
AFA_03320	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AFA_03340	PWY-5386	methylglyoxal degradation I
AFA_03345	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AFA_03345	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AFA_03345	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AFA_03345	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AFA_03345	PWY-6978	plastoquinol-9 biosynthesis II
AFA_03365	PWY-1281	sulfoacetaldehyde degradation I
AFA_03365	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AFA_03365	PWY-5482	pyruvate fermentation to acetate II
AFA_03365	PWY-5485	pyruvate fermentation to acetate IV
AFA_03365	PWY-5497	purine nucleobases degradation II (anaerobic)
AFA_03365	PWY-6637	sulfolactate degradation II
AFA_03365	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AFA_03385	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AFA_03385	PWY-5723	Rubisco shunt
AFA_03385	PWY-6891	thiazole biosynthesis II (Bacillus)
AFA_03385	PWY-6892	thiazole biosynthesis I (E. coli)
AFA_03385	PWY-6901	superpathway of glucose and xylose degradation
AFA_03385	PWY-7560	methylerythritol phosphate pathway II
AFA_03390	PWY-1042	glycolysis IV (plant cytosol)
AFA_03390	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFA_03390	PWY-6901	superpathway of glucose and xylose degradation
AFA_03390	PWY-7003	glycerol degradation to butanol
AFA_03395	PWY-1042	glycolysis IV (plant cytosol)
AFA_03395	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFA_03395	PWY-6886	1-butanol autotrophic biosynthesis
AFA_03395	PWY-6901	superpathway of glucose and xylose degradation
AFA_03395	PWY-7003	glycerol degradation to butanol
AFA_03425	PWY-1042	glycolysis IV (plant cytosol)
AFA_03425	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AFA_03425	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFA_03425	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFA_03425	PWY-7385	1,3-propanediol biosynthesis (engineered)
AFA_03430	PWY-6123	inosine-5'-phosphate biosynthesis I
AFA_03430	PWY-6124	inosine-5'-phosphate biosynthesis II
AFA_03430	PWY-7234	inosine-5'-phosphate biosynthesis III
AFA_03435	PWY-6123	inosine-5'-phosphate biosynthesis I
AFA_03435	PWY-7234	inosine-5'-phosphate biosynthesis III
AFA_03475	PWY-4041	&gamma;-glutamyl cycle
AFA_03475	PWY-4061	glutathione-mediated detoxification I
AFA_03475	PWY-5826	hypoglycin biosynthesis
AFA_03475	PWY-6842	glutathione-mediated detoxification II
AFA_03475	PWY-7112	4-hydroxy-2-nonenal detoxification
AFA_03475	PWY-7559	glutathione degradation (DUG pathway - yeast)
AFA_03480	PWY-2201	folate transformations I
AFA_03480	PWY-5497	purine nucleobases degradation II (anaerobic)
AFA_03480	PWY-7909	AFA_03480
AFA_03495	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AFA_03495	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AFA_03500	PWY-7942	AFA_03500
AFA_03515	PWY-5958	acridone alkaloid biosynthesis
AFA_03515	PWY-6543	4-aminobenzoate biosynthesis
AFA_03515	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AFA_03515	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AFA_03605	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AFA_03605	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFA_03605	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AFA_03605	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AFA_03605	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFA_03605	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFA_03605	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFA_03605	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AFA_03610	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AFA_03610	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFA_03610	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AFA_03610	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AFA_03610	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFA_03610	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFA_03610	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFA_03610	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AFA_03645	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFA_03645	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFA_03650	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFA_03650	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFA_03650	PWY-7953	AFA_03650
AFA_03655	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFA_03655	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFA_03655	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFA_03660	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFA_03660	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFA_03665	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFA_03665	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AFA_03665	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFA_03665	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFA_03670	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFA_03670	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AFA_03670	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFA_03670	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFA_03675	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFA_03675	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFA_03675	PWY-7953	AFA_03675
AFA_03680	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFA_03680	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFA_03680	PWY-7953	AFA_03680
AFA_03745	PWY-2301	<i>myo</i>-inositol biosynthesis
AFA_03745	PWY-4702	phytate degradation I
AFA_03745	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
AFA_03750	PWY-7892	AFA_03750
AFA_03830	PWY-5386	methylglyoxal degradation I
AFA_03870	PWY-5392	reductive TCA cycle II
AFA_03870	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AFA_03870	PWY-5690	TCA cycle II (plants and fungi)
AFA_03870	PWY-5913	TCA cycle VI (obligate autotrophs)
AFA_03870	PWY-6728	methylaspartate cycle
AFA_03870	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFA_03870	PWY-7254	TCA cycle VII (acetate-producers)
AFA_03870	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AFA_03895	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AFA_03895	PWY-6148	tetrahydromethanopterin biosynthesis
AFA_03895	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AFA_03895	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AFA_03895	PWY-7852	AFA_03895
AFA_03895	PWY-7853	AFA_03895
AFA_03915	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AFA_03915	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AFA_03915	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AFA_03925	PWY-2781	<i>cis</i>-zeatin biosynthesis
AFA_03980	PWY-1281	sulfoacetaldehyde degradation I
AFA_03980	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AFA_03980	PWY-5482	pyruvate fermentation to acetate II
AFA_03980	PWY-5485	pyruvate fermentation to acetate IV
AFA_03980	PWY-5497	purine nucleobases degradation II (anaerobic)
AFA_03980	PWY-6637	sulfolactate degradation II
AFA_03980	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AFA_03995	PWY-2941	L-lysine biosynthesis II
AFA_03995	PWY-2942	L-lysine biosynthesis III
AFA_03995	PWY-5097	L-lysine biosynthesis VI
AFA_04040	PWY-7352	daunorubicin biosynthesis
AFA_04040	PWY-7354	aclacinomycin biosynthesis
AFA_04125	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AFA_04125	PWY-5723	Rubisco shunt
AFA_04130	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFA_04130	PWY-5686	UMP biosynthesis
AFA_04130	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFA_04130	PWY-7790	AFA_04130
AFA_04130	PWY-7791	AFA_04130
AFA_04135	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFA_04135	PWY-5686	UMP biosynthesis
AFA_04135	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFA_04135	PWY-7790	AFA_04135
AFA_04135	PWY-7791	AFA_04135
AFA_04180	PWY-6614	tetrahydrofolate biosynthesis
AFA_04185	PWY-6749	CMP-legionaminate biosynthesis I
AFA_04295	PWY-6803	phosphatidylcholine acyl editing
AFA_04295	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
AFA_04295	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
AFA_04295	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
AFA_04295	PWY-7783	AFA_04295
AFA_04345	PWY-2941	L-lysine biosynthesis II
AFA_04345	PWY-2942	L-lysine biosynthesis III
AFA_04345	PWY-5097	L-lysine biosynthesis VI
AFA_04365	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AFA_04425	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AFA_04425	PWY-6855	chitin degradation I (archaea)
AFA_04425	PWY-6906	chitin derivatives degradation
AFA_04475	PWY-5796	malonate decarboxylase activation
AFA_04480	PWY-5796	malonate decarboxylase activation
AFA_04485	PWY-6060	malonate degradation II (biotin-dependent)
AFA_04490	PWY-4381	fatty acid biosynthesis initiation I
AFA_04490	PWY-5743	3-hydroxypropanoate cycle
AFA_04490	PWY-5744	glyoxylate assimilation
AFA_04490	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AFA_04490	PWY-6060	malonate degradation II (biotin-dependent)
AFA_04490	PWY-6722	candicidin biosynthesis
AFA_04500	PWY-5794	malonate degradation I (biotin-independent)
AFA_04500	PWY-6060	malonate degradation II (biotin-dependent)
AFA_04505	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AFA_04525	PWY-2301	<i>myo</i>-inositol biosynthesis
AFA_04525	PWY-4702	phytate degradation I
AFA_04525	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
AFA_04535	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
AFA_04565	PWY-4381	fatty acid biosynthesis initiation I
AFA_04565	PWY-5743	3-hydroxypropanoate cycle
AFA_04565	PWY-5744	glyoxylate assimilation
AFA_04565	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AFA_04565	PWY-6722	candicidin biosynthesis
AFA_04575	PWY-2941	L-lysine biosynthesis II
AFA_04575	PWY-2942	L-lysine biosynthesis III
AFA_04575	PWY-5097	L-lysine biosynthesis VI
AFA_04575	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AFA_04575	PWY-6559	spermidine biosynthesis II
AFA_04575	PWY-6562	norspermidine biosynthesis
AFA_04575	PWY-7153	grixazone biosynthesis
AFA_04575	PWY-7977	AFA_04575
AFA_04685	PWY-7731	AFA_04685
AFA_04705	PWY-6610	adenine and adenosine salvage IV
AFA_04800	PWY-5747	2-methylcitrate cycle II
AFA_04820	PWY-5747	2-methylcitrate cycle II
AFA_04840	PWY-1622	formaldehyde assimilation I (serine pathway)
AFA_04840	PWY-5392	reductive TCA cycle II
AFA_04840	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AFA_04840	PWY-5690	TCA cycle II (plants and fungi)
AFA_04840	PWY-5913	TCA cycle VI (obligate autotrophs)
AFA_04840	PWY-6728	methylaspartate cycle
AFA_04840	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFA_04840	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AFA_04840	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AFA_04860	PWY-3781	aerobic respiration I (cytochrome c)
AFA_04860	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AFA_04860	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AFA_04860	PWY-5690	TCA cycle II (plants and fungi)
AFA_04860	PWY-6728	methylaspartate cycle
AFA_04860	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFA_04860	PWY-7254	TCA cycle VII (acetate-producers)
AFA_04860	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AFA_04865	PWY-3781	aerobic respiration I (cytochrome c)
AFA_04865	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AFA_04865	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AFA_04865	PWY-5690	TCA cycle II (plants and fungi)
AFA_04865	PWY-6728	methylaspartate cycle
AFA_04865	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFA_04865	PWY-7254	TCA cycle VII (acetate-producers)
AFA_04865	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AFA_04890	PWY-1281	sulfoacetaldehyde degradation I
AFA_04890	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AFA_04890	PWY-5482	pyruvate fermentation to acetate II
AFA_04890	PWY-5485	pyruvate fermentation to acetate IV
AFA_04890	PWY-5497	purine nucleobases degradation II (anaerobic)
AFA_04890	PWY-6637	sulfolactate degradation II
AFA_04890	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AFA_04895	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AFA_04900	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AFA_04905	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AFA_04905	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AFA_04995	PWY-5676	acetyl-CoA fermentation to butanoate II
AFA_04995	PWY-5741	ethylmalonyl-CoA pathway
AFA_04995	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AFA_04995	PWY-7948	AFA_04995
AFA_05175	PWY-5350	thiosulfate disproportionation III (rhodanese)
AFA_05175	PWY-7927	AFA_05175
AFA_05190	PWY-6891	thiazole biosynthesis II (Bacillus)
AFA_05190	PWY-6892	thiazole biosynthesis I (E. coli)
AFA_05190	PWY-7560	methylerythritol phosphate pathway II
AFA_05195	PWY-5663	tetrahydrobiopterin biosynthesis I
AFA_05195	PWY-5664	tetrahydrobiopterin biosynthesis II
AFA_05195	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AFA_05195	PWY-6703	preQ<sub>0</sub> biosynthesis
AFA_05195	PWY-6983	tetrahydrobiopterin biosynthesis III
AFA_05195	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AFA_05195	PWY-7852	AFA_05195
AFA_05275	PWY-7072	hopanoid biosynthesis (bacteria)
AFA_05285	PWY-7072	hopanoid biosynthesis (bacteria)
AFA_05290	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AFA_05310	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
AFA_05310	PWY-7676	Kdo8N transfer to lipid IV<sub>A</sub>
AFA_05340	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AFA_05340	PWY-5723	Rubisco shunt
AFA_05360	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFA_05520	PWY-6216	3-chlorobenzoate degradation II (via protocatechuate)
AFA_05520	PWY-6217	3,4-dichlorobenzoate degradation
AFA_05530	PWY-7701	AFA_05530
AFA_05715	PWY-4261	glycerol degradation I
AFA_05720	PWY-4261	glycerol degradation I
AFA_05720	PWY-6118	glycerol-3-phosphate shuttle
AFA_05720	PWY-6952	glycerophosphodiester degradation
AFA_05950	PWY-7980	AFA_05950
AFA_06100	PWY-5316	nicotine biosynthesis
AFA_06100	PWY-5381	pyridine nucleotide cycling (plants)
AFA_06100	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AFA_06100	PWY-7342	superpathway of nicotine biosynthesis
AFA_06230	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
AFA_06385	PWY-3781	aerobic respiration I (cytochrome c)
AFA_06385	PWY-4521	arsenite oxidation I (respiratory)
AFA_06385	PWY-6692	Fe(II) oxidation
AFA_06385	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AFA_06425	PWY-6832	2-aminoethylphosphonate degradation II
AFA_07220	PWY-5963	thio-molybdenum cofactor biosynthesis
AFA_07255	PWY-4983	L-citrulline-nitric oxide cycle
AFA_07255	PWY-4984	urea cycle
AFA_07255	PWY-5	canavanine biosynthesis
AFA_07255	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFA_07255	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFA_07325	PWY-4981	L-proline biosynthesis II (from arginine)
AFA_07325	PWY-4984	urea cycle
AFA_07325	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFA_07355	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AFA_07360	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AFA_07390	PWY-6854	ethylene biosynthesis III (microbes)
AFA_07400	PWY-1361	benzoyl-CoA degradation I (aerobic)
AFA_07400	PWY-2361	3-oxoadipate degradation
AFA_07400	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AFA_07440	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
AFA_07440	PWY-6853	ethylene biosynthesis II (microbes)
AFA_07440	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AFA_07505	PWY-7851	AFA_07505
AFA_07510	PWY-7884	AFA_07510
AFA_07520	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AFA_07520	PWY-6167	flavin biosynthesis II (archaea)
AFA_07520	PWY-6168	flavin biosynthesis III (fungi)
AFA_07520	PWY-7863	AFA_07520
AFA_07525	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AFA_07525	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AFA_07700	PWY-5913	TCA cycle VI (obligate autotrophs)
AFA_07700	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AFA_07700	PWY-6638	sulfolactate degradation III
AFA_07700	PWY-6642	(<i>R</i>)-cysteate degradation
AFA_07700	PWY-6643	coenzyme M biosynthesis II
AFA_07700	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AFA_07700	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AFA_07700	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AFA_07720	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AFA_07785	PWY-7805	AFA_07785
AFA_07785	PWY-7807	AFA_07785
AFA_07830	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AFA_07830	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AFA_07830	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AFA_07835	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AFA_07835	PWY-6596	adenosine nucleotides degradation I
AFA_07835	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AFA_07845	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AFA_07945	PWY-6749	CMP-legionaminate biosynthesis I
AFA_07950	PWY-6614	tetrahydrofolate biosynthesis
AFA_07970	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AFA_07970	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AFA_07970	PWY-6936	seleno-amino acid biosynthesis
AFA_07970	PWY-702	L-methionine biosynthesis II
AFA_07985	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AFA_07985	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AFA_07985	PWY-6936	seleno-amino acid biosynthesis
AFA_07985	PWY-702	L-methionine biosynthesis II
AFA_08015	PWY-5663	tetrahydrobiopterin biosynthesis I
AFA_08015	PWY-5664	tetrahydrobiopterin biosynthesis II
AFA_08015	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AFA_08015	PWY-6703	preQ<sub>0</sub> biosynthesis
AFA_08015	PWY-6983	tetrahydrobiopterin biosynthesis III
AFA_08015	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AFA_08015	PWY-7852	AFA_08015
AFA_08030	PWY-5686	UMP biosynthesis
AFA_08030	PWY-7790	AFA_08030
AFA_08030	PWY-7791	AFA_08030
AFA_08045	PWY-6910	hydroxymethylpyrimidine salvage
AFA_08045	PWY-7356	thiamin salvage IV (yeast)
AFA_08045	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AFA_08070	PWY-723	alkylnitronates degradation
AFA_08095	PWY-5386	methylglyoxal degradation I
AFA_08235	PWY-6871	3-methylbutanol biosynthesis
AFA_08265	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AFA_08270	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AFA_08315	PWY-6854	ethylene biosynthesis III (microbes)
AFA_08365	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AFA_08400	PWY-5316	nicotine biosynthesis
AFA_08400	PWY-7342	superpathway of nicotine biosynthesis
AFA_08405	PWY-5316	nicotine biosynthesis
AFA_08405	PWY-7342	superpathway of nicotine biosynthesis
AFA_08445	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AFA_08460	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AFA_08515	PWY-5418	phenol degradation I (aerobic)
AFA_08515	PWY-6197	chlorinated phenols degradation
AFA_08535	PWY-5418	phenol degradation I (aerobic)
AFA_08535	PWY-6197	chlorinated phenols degradation
AFA_08790	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AFA_09135	PWY-6167	flavin biosynthesis II (archaea)
AFA_09135	PWY-6168	flavin biosynthesis III (fungi)
AFA_09135	PWY-7980	AFA_09135
AFA_09145	PWY-5392	reductive TCA cycle II
AFA_09145	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AFA_09145	PWY-5690	TCA cycle II (plants and fungi)
AFA_09145	PWY-5913	TCA cycle VI (obligate autotrophs)
AFA_09145	PWY-6728	methylaspartate cycle
AFA_09145	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFA_09145	PWY-7254	TCA cycle VII (acetate-producers)
AFA_09145	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AFA_09270	PWY-5381	pyridine nucleotide cycling (plants)
AFA_09270	PWY-7761	AFA_09270
AFA_09305	PWY-381	nitrate reduction II (assimilatory)
AFA_09305	PWY-5675	nitrate reduction V (assimilatory)
AFA_09305	PWY-6549	L-glutamine biosynthesis III
AFA_09305	PWY-6963	ammonia assimilation cycle I
AFA_09305	PWY-6964	ammonia assimilation cycle II
AFA_09395	PWY-3341	L-proline biosynthesis III
AFA_09395	PWY-4981	L-proline biosynthesis II (from arginine)
AFA_09395	PWY-6344	L-ornithine degradation II (Stickland reaction)
AFA_09455	PWY-5392	reductive TCA cycle II
AFA_09455	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AFA_09455	PWY-5690	TCA cycle II (plants and fungi)
AFA_09455	PWY-5913	TCA cycle VI (obligate autotrophs)
AFA_09455	PWY-6728	methylaspartate cycle
AFA_09455	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFA_09455	PWY-7254	TCA cycle VII (acetate-producers)
AFA_09455	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AFA_10045	PWY-4202	arsenate detoxification I (glutaredoxin)
AFA_10045	PWY-4621	arsenate detoxification II (glutaredoxin)
AFA_10135	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFA_10135	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFA_10145	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AFA_10170	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AFA_10170	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AFA_10170	PWY-5989	stearate biosynthesis II (bacteria and plants)
AFA_10170	PWY-5994	palmitate biosynthesis I (animals and fungi)
AFA_10170	PWY-6113	superpathway of mycolate biosynthesis
AFA_10170	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AFA_10170	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AFA_10170	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AFA_10170	PWY-7663	gondoate biosynthesis (anaerobic)
AFA_10170	PWY-7664	oleate biosynthesis IV (anaerobic)
AFA_10170	PWY-7858	AFA_10170
AFA_10170	PWYG-321	mycolate biosynthesis
AFA_10195	PWY-7560	methylerythritol phosphate pathway II
AFA_10200	PWY-5667	CDP-diacylglycerol biosynthesis I
AFA_10200	PWY-5981	CDP-diacylglycerol biosynthesis III
AFA_10200	PWY-7817	AFA_10200
AFA_10230	PWY-7799	AFA_10230
AFA_10230	PWY-7800	AFA_10230
AFA_10255	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AFA_10255	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AFA_10255	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AFA_10255	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AFA_10270	PWY-2161	folate polyglutamylation
AFA_10275	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AFA_10275	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AFA_10285	PWY-6891	thiazole biosynthesis II (Bacillus)
AFA_10285	PWY-6892	thiazole biosynthesis I (E. coli)
AFA_10285	PWY-7560	methylerythritol phosphate pathway II
AFA_10300	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AFA_10300	PWY-2201	folate transformations I
AFA_10300	PWY-3841	folate transformations II
AFA_10300	PWY-5030	L-histidine degradation III
AFA_10300	PWY-5497	purine nucleobases degradation II (anaerobic)
AFA_10300	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AFA_10300	PWY-7909	AFA_10300
AFA_10330	PWY-6854	ethylene biosynthesis III (microbes)
AFA_10355	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFA_10355	PWY-6416	quinate degradation II
AFA_10355	PWY-6707	gallate biosynthesis
AFA_10490	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AFA_10540	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
AFA_10540	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AFA_10540	PWY-6148	tetrahydromethanopterin biosynthesis
AFA_10540	PWY-7742	AFA_10540
AFA_10540	PWY-7745	AFA_10540
AFA_10540	PWY-7929	AFA_10540
AFA_10540	PWY-7934	AFA_10540
AFA_10540	PWY-7935	AFA_10540
AFA_10565	PWY-4983	L-citrulline-nitric oxide cycle
AFA_10565	PWY-4984	urea cycle
AFA_10565	PWY-5	canavanine biosynthesis
AFA_10565	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFA_10565	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFA_10605	PWY-5381	pyridine nucleotide cycling (plants)
AFA_10605	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AFA_10605	PWY-6596	adenosine nucleotides degradation I
AFA_10605	PWY-6606	guanosine nucleotides degradation II
AFA_10605	PWY-6607	guanosine nucleotides degradation I
AFA_10605	PWY-6608	guanosine nucleotides degradation III
AFA_10605	PWY-7185	UTP and CTP dephosphorylation I
AFA_10605	PWY-7821	AFA_10605
AFA_10700	PWY-6891	thiazole biosynthesis II (Bacillus)
AFA_10700	PWY-6892	thiazole biosynthesis I (E. coli)
AFA_10705	PWY-1281	sulfoacetaldehyde degradation I
AFA_10705	PWY-6637	sulfolactate degradation II
AFA_10710	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
AFA_10715	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
AFA_10725	PWY-1281	sulfoacetaldehyde degradation I
AFA_10725	PWY-5482	pyruvate fermentation to acetate II
AFA_10725	PWY-5485	pyruvate fermentation to acetate IV
AFA_10725	PWY-5497	purine nucleobases degradation II (anaerobic)
AFA_10725	PWY-6637	sulfolactate degradation II
AFA_10805	PWY-2941	L-lysine biosynthesis II
AFA_10805	PWY-2942	L-lysine biosynthesis III
AFA_10805	PWY-5097	L-lysine biosynthesis VI
AFA_10805	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFA_10805	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AFA_10805	PWY-6559	spermidine biosynthesis II
AFA_10805	PWY-6562	norspermidine biosynthesis
AFA_10805	PWY-7153	grixazone biosynthesis
AFA_10805	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFA_10805	PWY-7977	AFA_10805
AFA_10810	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AFA_10850	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFA_10880	PWY-702	L-methionine biosynthesis II
AFA_10960	PWY-7805	AFA_10960
AFA_10960	PWY-7807	AFA_10960
AFA_10975	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFA_10975	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AFA_10980	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFA_10980	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AFA_10990	PWY-5392	reductive TCA cycle II
AFA_10990	PWY-5537	pyruvate fermentation to acetate V
AFA_10990	PWY-5538	pyruvate fermentation to acetate VI
AFA_10990	PWY-5690	TCA cycle II (plants and fungi)
AFA_10990	PWY-5913	TCA cycle VI (obligate autotrophs)
AFA_10990	PWY-6728	methylaspartate cycle
AFA_10990	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFA_10990	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AFA_10995	PWY-5392	reductive TCA cycle II
AFA_10995	PWY-5537	pyruvate fermentation to acetate V
AFA_10995	PWY-5538	pyruvate fermentation to acetate VI
AFA_10995	PWY-5690	TCA cycle II (plants and fungi)
AFA_10995	PWY-5913	TCA cycle VI (obligate autotrophs)
AFA_10995	PWY-6728	methylaspartate cycle
AFA_10995	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFA_10995	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AFA_11005	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AFA_11005	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AFA_11005	PWY-6936	seleno-amino acid biosynthesis
AFA_11005	PWY-702	L-methionine biosynthesis II
AFA_11070	PWY-5642	2,4-dinitrotoluene degradation
AFA_11075	PWY-5686	UMP biosynthesis
AFA_11075	PWY-7790	AFA_11075
AFA_11075	PWY-7791	AFA_11075
AFA_11090	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFA_11090	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AFA_11090	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFA_11090	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFA_11105	PWY-723	alkylnitronates degradation
AFA_11110	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AFA_11235	PWY-5194	siroheme biosynthesis
AFA_11235	PWY-5196	factor 430 biosynthesis
AFA_11235	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AFA_11275	PWY-5194	siroheme biosynthesis
AFA_11275	PWY-5196	factor 430 biosynthesis
AFA_11275	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AFA_11465	PWY-4041	&gamma;-glutamyl cycle
AFA_11465	PWY-7942	AFA_11465
AFA_11475	PWY-5497	purine nucleobases degradation II (anaerobic)
AFA_11475	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AFA_11475	PWY-6538	caffeine degradation III (bacteria, via demethylation)
AFA_11475	PWY-6596	adenosine nucleotides degradation I
AFA_11475	PWY-6606	guanosine nucleotides degradation II
AFA_11475	PWY-6607	guanosine nucleotides degradation I
AFA_11475	PWY-6608	guanosine nucleotides degradation III
AFA_11475	PWY-6999	theophylline degradation
AFA_11480	PWY-5497	purine nucleobases degradation II (anaerobic)
AFA_11480	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AFA_11480	PWY-6538	caffeine degradation III (bacteria, via demethylation)
AFA_11480	PWY-6596	adenosine nucleotides degradation I
AFA_11480	PWY-6606	guanosine nucleotides degradation II
AFA_11480	PWY-6607	guanosine nucleotides degradation I
AFA_11480	PWY-6608	guanosine nucleotides degradation III
AFA_11480	PWY-6999	theophylline degradation
AFA_11490	PWY-5497	purine nucleobases degradation II (anaerobic)
AFA_11490	PWY-6606	guanosine nucleotides degradation II
AFA_11490	PWY-6608	guanosine nucleotides degradation III
AFA_11490	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AFA_11495	PWY-6825	phosphatidylcholine biosynthesis V
AFA_11530	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AFA_11600	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AFA_11600	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AFA_11600	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFA_11600	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFA_11600	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AFA_11600	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AFA_11600	PWY-7205	CMP phosphorylation
AFA_11600	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AFA_11600	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFA_11600	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AFA_11600	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFA_11600	PWY-7224	purine deoxyribonucleosides salvage
AFA_11600	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFA_11600	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AFA_11615	PWY-6829	tRNA methylation (yeast)
AFA_11615	PWY-7285	methylwyosine biosynthesis
AFA_11615	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AFA_11650	PWY-5691	urate degradation to allantoin I
AFA_11650	PWY-7394	urate degradation to allantoin II
AFA_11650	PWY-7849	AFA_11650
AFA_11705	PWY-7980	AFA_11705
AFA_11730	PWY-6700	queuosine biosynthesis
AFA_11775	PWY-3781	aerobic respiration I (cytochrome c)
AFA_11775	PWY-4521	arsenite oxidation I (respiratory)
AFA_11775	PWY-6692	Fe(II) oxidation
AFA_11775	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AFA_11795	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFA_11800	PWY-6700	queuosine biosynthesis
AFA_11810	PWY-5269	cardiolipin biosynthesis II
AFA_11810	PWY-5668	cardiolipin biosynthesis I
AFA_11810	PWY-7817	AFA_11810
AFA_11820	PWY-6902	chitin degradation II
AFA_11820	PWY-7822	AFA_11820
AFA_11820	PWY-7883	AFA_11820
AFA_11825	PWY-6012	acyl carrier protein metabolism I
AFA_11825	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AFA_11825	PWY-6289	petrobactin biosynthesis
AFA_11830	PWY-1341	phenylacetate degradation II (anaerobic)
AFA_11830	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AFA_11830	PWY-7716	AFA_11830
AFA_11940	PWY-6936	seleno-amino acid biosynthesis
AFA_11980	PWY-7205	CMP phosphorylation
AFA_11985	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFA_11990	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
AFA_11995	PWY-3461	L-tyrosine biosynthesis II
AFA_11995	PWY-3462	L-phenylalanine biosynthesis II
AFA_11995	PWY-6120	L-tyrosine biosynthesis III
AFA_11995	PWY-6627	salinosporamide A biosynthesis
AFA_11995	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
AFA_11995	PWY-7626	bacilysin biosynthesis
AFA_12015	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AFA_12015	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AFA_12015	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AFA_12015	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AFA_12015	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
AFA_12015	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
AFA_12015	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
AFA_12015	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AFA_12015	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
AFA_12015	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
AFA_12020	PWY-181	photorespiration
AFA_12440	PWY-5278	sulfite oxidation III
AFA_12440	PWY-5340	sulfate activation for sulfonation
AFA_12440	PWY-6683	sulfate reduction III (assimilatory)
AFA_12440	PWY-6932	selenate reduction
AFA_12460	PWY-6834	spermidine biosynthesis III
AFA_12500	PWY-6168	flavin biosynthesis III (fungi)
AFA_12500	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AFA_12500	PWY-7991	AFA_12500
AFA_12545	PWY-6123	inosine-5'-phosphate biosynthesis I
AFA_12545	PWY-6124	inosine-5'-phosphate biosynthesis II
AFA_12545	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AFA_12545	PWY-7234	inosine-5'-phosphate biosynthesis III
AFA_12570	PWY-7887	AFA_12570
AFA_12570	PWY-7892	AFA_12570
AFA_12580	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AFA_12580	PWY-6164	3-dehydroquinate biosynthesis I
AFA_12580	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AFA_12635	PWY-6409	pyoverdine I biosynthesis
AFA_12635	PWY-6562	norspermidine biosynthesis
AFA_12635	PWY-761	rhizobactin 1021 biosynthesis
AFA_12635	PWY-7855	AFA_12635
AFA_12635	PWY-7988	AFA_12635
AFA_12680	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFA_12715	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AFA_12715	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AFA_12715	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AFA_12720	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AFA_12725	PWY-5381	pyridine nucleotide cycling (plants)
AFA_12725	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AFA_12725	PWY-7761	AFA_12725
AFA_12780	PWY-7560	methylerythritol phosphate pathway II
AFA_12860	PWY-3341	L-proline biosynthesis III
AFA_12860	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AFA_12895	PWY-1042	glycolysis IV (plant cytosol)
AFA_12895	PWY-1622	formaldehyde assimilation I (serine pathway)
AFA_12895	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AFA_12895	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFA_12895	PWY-5723	Rubisco shunt
AFA_12895	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFA_12895	PWY-6886	1-butanol autotrophic biosynthesis
AFA_12895	PWY-6901	superpathway of glucose and xylose degradation
AFA_12895	PWY-7003	glycerol degradation to butanol
AFA_12895	PWY-7124	ethylene biosynthesis V (engineered)
AFA_12895	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AFA_12920	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AFA_12920	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AFA_12925	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AFA_12925	PWY-7177	UTP and CTP dephosphorylation II
AFA_12925	PWY-7185	UTP and CTP dephosphorylation I
AFA_12960	PWY-5108	L-isoleucine biosynthesis V
AFA_12960	PWY-5132	humulone biosynthesis
AFA_12960	PWY-5133	cohumulone biosynthesis
AFA_12960	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AFA_12960	PWY-7118	chitin degradation to ethanol
AFA_12960	PWY-7857	AFA_12960
AFA_12985	PWY-5642	2,4-dinitrotoluene degradation
AFA_13045	PWY-6936	seleno-amino acid biosynthesis
AFA_13045	PWY-7274	D-cycloserine biosynthesis
AFA_13045	PWY-7870	AFA_13045
AFA_13120	PWY-5367	petroselinate biosynthesis
AFA_13120	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AFA_13120	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AFA_13120	PWY-5989	stearate biosynthesis II (bacteria and plants)
AFA_13120	PWY-5994	palmitate biosynthesis I (animals and fungi)
AFA_13120	PWY-6113	superpathway of mycolate biosynthesis
AFA_13120	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AFA_13120	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AFA_13120	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AFA_13120	PWY-7663	gondoate biosynthesis (anaerobic)
AFA_13120	PWY-7664	oleate biosynthesis IV (anaerobic)
AFA_13120	PWY-7858	AFA_13120
AFA_13120	PWYG-321	mycolate biosynthesis
AFA_13125	PWY-4381	fatty acid biosynthesis initiation I
AFA_13125	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AFA_13125	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AFA_13130	PWY-4381	fatty acid biosynthesis initiation I
AFA_13190	PWY-4381	fatty acid biosynthesis initiation I
AFA_13190	PWY-5743	3-hydroxypropanoate cycle
AFA_13190	PWY-5744	glyoxylate assimilation
AFA_13190	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AFA_13190	PWY-6722	candicidin biosynthesis
AFA_13215	PWY-5381	pyridine nucleotide cycling (plants)
AFA_13330	PWY-7560	methylerythritol phosphate pathway II
AFA_13335	PWY-7560	methylerythritol phosphate pathway II
AFA_13355	PWY-723	alkylnitronates degradation
AFA_13370	PWY-3781	aerobic respiration I (cytochrome c)
AFA_13370	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AFA_13370	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AFA_13370	PWY-6692	Fe(II) oxidation
AFA_13450	PWY-1042	glycolysis IV (plant cytosol)
AFA_13450	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFA_13450	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFA_13450	PWY-7003	glycerol degradation to butanol
AFA_13485	PWY-5669	phosphatidylethanolamine biosynthesis I
AFA_13490	PWY-5103	L-isoleucine biosynthesis III
AFA_13490	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFA_13495	PWY-5101	L-isoleucine biosynthesis II
AFA_13495	PWY-5103	L-isoleucine biosynthesis III
AFA_13495	PWY-5104	L-isoleucine biosynthesis IV
AFA_13495	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AFA_13495	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AFA_13495	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AFA_13495	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFA_13500	PWY-5101	L-isoleucine biosynthesis II
AFA_13500	PWY-5103	L-isoleucine biosynthesis III
AFA_13500	PWY-5104	L-isoleucine biosynthesis IV
AFA_13500	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AFA_13500	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AFA_13500	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AFA_13500	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFA_13540	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AFA_13610	PWY-5913	TCA cycle VI (obligate autotrophs)
AFA_13610	PWY-6549	L-glutamine biosynthesis III
AFA_13610	PWY-6728	methylaspartate cycle
AFA_13610	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFA_13610	PWY-7124	ethylene biosynthesis V (engineered)
AFA_13610	PWY-7254	TCA cycle VII (acetate-producers)
AFA_13610	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AFA_13780	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AFA_13780	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AFA_13780	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AFA_13800	PWY-2941	L-lysine biosynthesis II
AFA_13800	PWY-2942	L-lysine biosynthesis III
AFA_13800	PWY-5097	L-lysine biosynthesis VI
AFA_13810	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFA_13810	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFA_13810	PWY-7953	AFA_13810
AFA_13870	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
AFA_13870	PWY-6853	ethylene biosynthesis II (microbes)
AFA_13870	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AFA_13940	PWY-6690	cinnamate and 3-hydroxycinnamate degradation to 2-oxopent-4-enoate
AFA_13955	PWY-5162	2-oxopentenoate degradation
AFA_13955	PWY-5436	L-threonine degradation IV
AFA_13955	PWY-5480	pyruvate fermentation to ethanol I
AFA_13955	PWY-6587	pyruvate fermentation to ethanol III
AFA_13955	PWY-7085	triethylamine degradation
AFA_13955	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
AFA_13960	PWY-5162	2-oxopentenoate degradation
AFA_13980	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AFA_14020	PWY-5676	acetyl-CoA fermentation to butanoate II
AFA_14020	PWY-5741	ethylmalonyl-CoA pathway
AFA_14020	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AFA_14020	PWY-7948	AFA_14020
AFA_14065	PWY-6703	preQ<sub>0</sub> biosynthesis
AFA_14070	PWY-1622	formaldehyde assimilation I (serine pathway)
AFA_14070	PWY-181	photorespiration
AFA_14070	PWY-2161	folate polyglutamylation
AFA_14070	PWY-2201	folate transformations I
AFA_14070	PWY-3661	glycine betaine degradation I
AFA_14070	PWY-3661-1	glycine betaine degradation II (mammalian)
AFA_14070	PWY-3841	folate transformations II
AFA_14070	PWY-5497	purine nucleobases degradation II (anaerobic)
AFA_14085	PWY-1622	formaldehyde assimilation I (serine pathway)
AFA_14085	PWY-181	photorespiration
AFA_14085	PWY-2161	folate polyglutamylation
AFA_14085	PWY-2201	folate transformations I
AFA_14085	PWY-3661	glycine betaine degradation I
AFA_14085	PWY-3661-1	glycine betaine degradation II (mammalian)
AFA_14085	PWY-3841	folate transformations II
AFA_14085	PWY-5497	purine nucleobases degradation II (anaerobic)
AFA_14105	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AFA_14105	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AFA_14175	PWY-3781	aerobic respiration I (cytochrome c)
AFA_14175	PWY-4521	arsenite oxidation I (respiratory)
AFA_14175	PWY-6692	Fe(II) oxidation
AFA_14175	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AFA_14200	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFA_14200	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFA_14215	PWY-7782	AFA_14215
AFA_14215	PWY-7783	AFA_14215
AFA_14325	PWY-5392	reductive TCA cycle II
AFA_14325	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AFA_14325	PWY-5690	TCA cycle II (plants and fungi)
AFA_14325	PWY-5913	TCA cycle VI (obligate autotrophs)
AFA_14325	PWY-6728	methylaspartate cycle
AFA_14325	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFA_14325	PWY-7254	TCA cycle VII (acetate-producers)
AFA_14325	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AFA_14345	PWY-7801	AFA_14345
AFA_14350	PWY-7802	AFA_14350
AFA_14355	PWY-5686	UMP biosynthesis
AFA_14445	PWY-6123	inosine-5'-phosphate biosynthesis I
AFA_14445	PWY-6124	inosine-5'-phosphate biosynthesis II
AFA_14445	PWY-7234	inosine-5'-phosphate biosynthesis III
AFA_14475	PWY-5686	UMP biosynthesis
AFA_14475	PWY-7790	AFA_14475
AFA_14475	PWY-7791	AFA_14475
AFA_14700	PWY-2942	L-lysine biosynthesis III
AFA_14750	PWY-5278	sulfite oxidation III
AFA_14750	PWY-5340	sulfate activation for sulfonation
AFA_14750	PWY-6683	sulfate reduction III (assimilatory)
AFA_14750	PWY-6932	selenate reduction
AFA_14755	PWY-5278	sulfite oxidation III
AFA_14755	PWY-5340	sulfate activation for sulfonation
AFA_14755	PWY-6683	sulfate reduction III (assimilatory)
AFA_14755	PWY-6932	selenate reduction
AFA_14785	PWY-5482	pyruvate fermentation to acetate II
AFA_14785	PWY-5485	pyruvate fermentation to acetate IV
AFA_14785	PWY-5497	purine nucleobases degradation II (anaerobic)
AFA_14790	PWY-1281	sulfoacetaldehyde degradation I
AFA_14790	PWY-5482	pyruvate fermentation to acetate II
AFA_14790	PWY-5485	pyruvate fermentation to acetate IV
AFA_14790	PWY-5497	purine nucleobases degradation II (anaerobic)
AFA_14790	PWY-6637	sulfolactate degradation II
AFA_14815	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AFA_14835	PWY-7039	phosphatidate metabolism, as a signaling molecule
AFA_14835	PWY-7817	AFA_14835
AFA_14840	PWY-5686	UMP biosynthesis
AFA_14840	PWY-7790	AFA_14840
AFA_14840	PWY-7791	AFA_14840
AFA_14865	PWY-5269	cardiolipin biosynthesis II
AFA_14865	PWY-5668	cardiolipin biosynthesis I
AFA_14865	PWY-7817	AFA_14865
AFA_14870	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AFA_14870	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AFA_14870	PWY-6896	thiamin salvage I
AFA_14870	PWY-6897	thiamin salvage II
AFA_14880	PWY-6167	flavin biosynthesis II (archaea)
AFA_14880	PWY-6168	flavin biosynthesis III (fungi)
AFA_14885	PWY-6167	flavin biosynthesis II (archaea)
AFA_14885	PWY-6168	flavin biosynthesis III (fungi)
AFA_14885	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AFA_14885	PWY-7991	AFA_14885
AFA_14910	PWY-7851	AFA_14910
AFA_14920	PWY-5963	thio-molybdenum cofactor biosynthesis
AFA_15070	PWY-6938	NADH repair
AFA_15215	PWY-5386	methylglyoxal degradation I
AFA_15225	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AFA_15225	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AFA_15225	PWY-5989	stearate biosynthesis II (bacteria and plants)
AFA_15225	PWY-6113	superpathway of mycolate biosynthesis
AFA_15225	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AFA_15225	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AFA_15225	PWY-7663	gondoate biosynthesis (anaerobic)
AFA_15225	PWY-7664	oleate biosynthesis IV (anaerobic)
AFA_15225	PWY-7858	AFA_15225
AFA_15225	PWYG-321	mycolate biosynthesis
AFA_15275	PWY-5331	taurine biosynthesis
AFA_15285	PWY-5392	reductive TCA cycle II
AFA_15285	PWY-5537	pyruvate fermentation to acetate V
AFA_15285	PWY-5538	pyruvate fermentation to acetate VI
AFA_15285	PWY-5690	TCA cycle II (plants and fungi)
AFA_15285	PWY-5913	TCA cycle VI (obligate autotrophs)
AFA_15285	PWY-6728	methylaspartate cycle
AFA_15285	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFA_15285	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AFA_15345	PWY-7782	AFA_15345
AFA_15345	PWY-7783	AFA_15345
AFA_15420	PWY-4202	arsenate detoxification I (glutaredoxin)
AFA_15420	PWY-4621	arsenate detoxification II (glutaredoxin)
AFA_15480	PWY-7991	AFA_15480
AFA_15490	PWY-1622	formaldehyde assimilation I (serine pathway)
AFA_15490	PWY-181	photorespiration
AFA_15490	PWY-2161	folate polyglutamylation
AFA_15490	PWY-2201	folate transformations I
AFA_15490	PWY-3661	glycine betaine degradation I
AFA_15490	PWY-3661-1	glycine betaine degradation II (mammalian)
AFA_15490	PWY-3841	folate transformations II
AFA_15490	PWY-5497	purine nucleobases degradation II (anaerobic)
AFA_15510	PWY-7883	AFA_15510
AFA_15535	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFA_15535	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFA_15575	PWY-5392	reductive TCA cycle II
AFA_15575	PWY-5537	pyruvate fermentation to acetate V
AFA_15575	PWY-5538	pyruvate fermentation to acetate VI
AFA_15575	PWY-5690	TCA cycle II (plants and fungi)
AFA_15575	PWY-5913	TCA cycle VI (obligate autotrophs)
AFA_15575	PWY-6728	methylaspartate cycle
AFA_15575	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFA_15575	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AFA_15595	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFA_15665	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFA_15665	PWY-6416	quinate degradation II
AFA_15665	PWY-6707	gallate biosynthesis
AFA_15675	PWY-7883	AFA_15675
AFA_15695	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFA_15700	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFA_15700	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AFA_15700	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFA_15700	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFA_15740	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AFA_15740	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AFA_15740	PWY-6897	thiamin salvage II
AFA_15740	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AFA_15740	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AFA_15740	PWY-7356	thiamin salvage IV (yeast)
AFA_15740	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AFA_15745	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFA_15760	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFA_15790	PWY-3341	L-proline biosynthesis III
AFA_15790	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AFA_15815	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
AFA_15865	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFA_15865	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AFA_15865	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFA_15865	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFA_15870	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFA_15870	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFA_15895	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AFA_15905	PWY-5686	UMP biosynthesis
AFA_15905	PWY-7790	AFA_15905
AFA_15905	PWY-7791	AFA_15905
AFA_15935	PWY-6523	nitrite-dependent anaerobic methane oxidation
AFA_15935	PWY-6748	nitrate reduction VII (denitrification)
AFA_15935	PWY-7084	nitrifier denitrification
AFA_15955	PWY-5392	reductive TCA cycle II
AFA_15955	PWY-5537	pyruvate fermentation to acetate V
AFA_15955	PWY-5538	pyruvate fermentation to acetate VI
AFA_15955	PWY-5690	TCA cycle II (plants and fungi)
AFA_15955	PWY-5913	TCA cycle VI (obligate autotrophs)
AFA_15955	PWY-6728	methylaspartate cycle
AFA_15955	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFA_15955	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AFA_15965	PWY-3781	aerobic respiration I (cytochrome c)
AFA_15965	PWY-4521	arsenite oxidation I (respiratory)
AFA_15965	PWY-6692	Fe(II) oxidation
AFA_15965	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AFA_16055	PWY-6502	oxidized GTP and dGTP detoxification
AFA_16055	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AFA_16055	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AFA_16055	PWY-6897	thiamin salvage II
AFA_16055	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AFA_16055	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AFA_16055	PWY-7356	thiamin salvage IV (yeast)
AFA_16055	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AFA_16090	PWY-7851	AFA_16090
AFA_16145	PWY-2201	folate transformations I
AFA_16145	PWY-3841	folate transformations II
AFA_16145	PWY-7977	AFA_16145
AFA_16180	PWY-6891	thiazole biosynthesis II (Bacillus)
AFA_16180	PWY-6892	thiazole biosynthesis I (E. coli)
AFA_16185	PWY-6910	hydroxymethylpyrimidine salvage
AFA_16185	PWY-7356	thiamin salvage IV (yeast)
AFA_16185	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AFA_16190	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AFA_16190	PWY-6153	autoinducer AI-2 biosynthesis I
AFA_16190	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
AFA_16230	PWY-5839	menaquinol-7 biosynthesis
AFA_16230	PWY-5844	menaquinol-9 biosynthesis
AFA_16230	PWY-5849	menaquinol-6 biosynthesis
AFA_16230	PWY-5890	menaquinol-10 biosynthesis
AFA_16230	PWY-5891	menaquinol-11 biosynthesis
AFA_16230	PWY-5892	menaquinol-12 biosynthesis
AFA_16230	PWY-5895	menaquinol-13 biosynthesis
AFA_16250	PWY-4041	&gamma;-glutamyl cycle
AFA_16250	PWY-7942	AFA_16250
AFA_16300	PWY-6605	adenine and adenosine salvage II
AFA_16300	PWY-6610	adenine and adenosine salvage IV
AFA_16300	PWY-7805	AFA_16300
AFA_16300	PWY-7807	AFA_16300
AFA_16315	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
AFA_16340	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AFA_16340	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AFA_16395	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
AFA_16410	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFA_16410	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFA_16435	PWY-1622	formaldehyde assimilation I (serine pathway)
AFA_16435	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFA_16455	PWY-5667	CDP-diacylglycerol biosynthesis I
AFA_16455	PWY-5981	CDP-diacylglycerol biosynthesis III
AFA_16455	PWY-7902	AFA_16455
AFA_16480	PWY-6167	flavin biosynthesis II (archaea)
AFA_16480	PWY-6168	flavin biosynthesis III (fungi)
AFA_16515	PWY-3821	galactose degradation III
AFA_16515	PWY-6317	galactose degradation I (Leloir pathway)
AFA_16515	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AFA_16515	PWY-6527	stachyose degradation
AFA_16515	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AFA_16515	PWY-7344	UDP-D-galactose biosynthesis
AFA_16520	PWY-5033	nicotinate degradation II
AFA_16520	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFA_16520	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFA_16520	PWY-6993	nicotine degradation II (pyrrolidine pathway)
AFA_16520	PWY-7128	nicotine degradation III (VPP pathway)
AFA_16520	PWY-722	nicotinate degradation I
AFA_16585	PWY-3221	dTDP-L-rhamnose biosynthesis II
AFA_16585	PWY-6808	dTDP-D-forosamine biosynthesis
AFA_16585	PWY-6942	dTDP-D-desosamine biosynthesis
AFA_16585	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AFA_16585	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AFA_16585	PWY-6974	dTDP-L-olivose biosynthesis
AFA_16585	PWY-6976	dTDP-L-mycarose biosynthesis
AFA_16585	PWY-7104	dTDP-L-megosamine biosynthesis
AFA_16585	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AFA_16585	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AFA_16585	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AFA_16585	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AFA_16585	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AFA_16585	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AFA_16585	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AFA_16585	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AFA_16585	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AFA_16585	PWY-7688	AFA_16585
AFA_16585	PWY-7814	AFA_16585
AFA_16590	PWY-3221	dTDP-L-rhamnose biosynthesis II
AFA_16590	PWY-6808	dTDP-D-forosamine biosynthesis
AFA_16590	PWY-6942	dTDP-D-desosamine biosynthesis
AFA_16590	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AFA_16590	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AFA_16590	PWY-6974	dTDP-L-olivose biosynthesis
AFA_16590	PWY-6976	dTDP-L-mycarose biosynthesis
AFA_16590	PWY-7104	dTDP-L-megosamine biosynthesis
AFA_16590	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AFA_16590	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AFA_16590	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AFA_16590	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AFA_16590	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AFA_16590	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AFA_16590	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AFA_16590	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AFA_16590	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AFA_16590	PWY-7688	AFA_16590
AFA_16590	PWY-7814	AFA_16590
AFA_16610	PWY-7980	AFA_16610
AFA_16620	PWY-7980	AFA_16620
AFA_16660	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AFA_16660	PWY-6148	tetrahydromethanopterin biosynthesis
AFA_16660	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AFA_16660	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AFA_16690	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFA_16735	PWY-6854	ethylene biosynthesis III (microbes)
AFA_16905	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AFA_16920	PWY-6748	nitrate reduction VII (denitrification)
AFA_16920	PWY-7084	nitrifier denitrification
AFA_16950	PWY-3801	sucrose degradation II (sucrose synthase)
AFA_16950	PWY-5054	sorbitol biosynthesis I
AFA_16950	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AFA_16950	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AFA_16950	PWY-5659	GDP-mannose biosynthesis
AFA_16950	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFA_16950	PWY-621	sucrose degradation III (sucrose invertase)
AFA_16950	PWY-622	starch biosynthesis
AFA_16950	PWY-6981	chitin biosynthesis
AFA_16950	PWY-6992	1,5-anhydrofructose degradation
AFA_16950	PWY-7238	sucrose biosynthesis II
AFA_16950	PWY-7347	sucrose biosynthesis III
AFA_16950	PWY-7385	1,3-propanediol biosynthesis (engineered)
AFA_17085	PWY-1361	benzoyl-CoA degradation I (aerobic)
AFA_17085	PWY-5109	2-methylbutanoate biosynthesis
AFA_17085	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AFA_17085	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AFA_17085	PWY-5177	glutaryl-CoA degradation
AFA_17085	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AFA_17085	PWY-6435	4-hydroxybenzoate biosynthesis V
AFA_17085	PWY-6583	pyruvate fermentation to butanol I
AFA_17085	PWY-6863	pyruvate fermentation to hexanol
AFA_17085	PWY-6883	pyruvate fermentation to butanol II
AFA_17085	PWY-6944	androstenedione degradation
AFA_17085	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AFA_17085	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AFA_17085	PWY-7007	methyl ketone biosynthesis
AFA_17085	PWY-7046	4-coumarate degradation (anaerobic)
AFA_17085	PWY-7094	fatty acid salvage
AFA_17085	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AFA_17085	PWY-735	jasmonic acid biosynthesis
AFA_17085	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AFA_17085	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AFA_17085	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AFA_17085	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AFA_17085	PWY-7726	AFA_17085
AFA_17085	PWY-7778	AFA_17085
AFA_17085	PWY-7779	AFA_17085
AFA_17140	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFA_17140	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFA_17140	PWY-7953	AFA_17140
AFA_17220	PWY-3781	aerobic respiration I (cytochrome c)
AFA_17220	PWY-6692	Fe(II) oxidation
AFA_17220	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
AFA_17220	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AFA_17280	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AFA_17325	PWY-5101	L-isoleucine biosynthesis II
AFA_17325	PWY-5103	L-isoleucine biosynthesis III
AFA_17325	PWY-5104	L-isoleucine biosynthesis IV
AFA_17325	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFA_17360	PWY-6654	phosphopantothenate biosynthesis III
AFA_17420	PWY-5367	petroselinate biosynthesis
AFA_17420	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AFA_17420	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AFA_17420	PWY-5989	stearate biosynthesis II (bacteria and plants)
AFA_17420	PWY-5994	palmitate biosynthesis I (animals and fungi)
AFA_17420	PWY-6113	superpathway of mycolate biosynthesis
AFA_17420	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AFA_17420	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AFA_17420	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AFA_17420	PWY-7663	gondoate biosynthesis (anaerobic)
AFA_17420	PWY-7664	oleate biosynthesis IV (anaerobic)
AFA_17420	PWY-7858	AFA_17420
AFA_17420	PWYG-321	mycolate biosynthesis
AFA_17495	PWY-6749	CMP-legionaminate biosynthesis I
AFA_17515	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AFA_17535	PWY-3781	aerobic respiration I (cytochrome c)
AFA_17535	PWY-4521	arsenite oxidation I (respiratory)
AFA_17535	PWY-6692	Fe(II) oxidation
AFA_17535	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AFA_17605	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AFA_17610	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AFA_17610	PWY-3162	L-tryptophan degradation V (side chain pathway)
AFA_17610	PWY-5057	L-valine degradation II
AFA_17610	PWY-5076	L-leucine degradation III
AFA_17610	PWY-5078	L-isoleucine degradation II
AFA_17610	PWY-5079	L-phenylalanine degradation III
AFA_17610	PWY-5082	L-methionine degradation III
AFA_17610	PWY-5480	pyruvate fermentation to ethanol I
AFA_17610	PWY-5486	pyruvate fermentation to ethanol II
AFA_17610	PWY-5751	phenylethanol biosynthesis
AFA_17610	PWY-6313	serotonin degradation
AFA_17610	PWY-6333	acetaldehyde biosynthesis I
AFA_17610	PWY-6342	noradrenaline and adrenaline degradation
AFA_17610	PWY-6587	pyruvate fermentation to ethanol III
AFA_17610	PWY-6802	salidroside biosynthesis
AFA_17610	PWY-6871	3-methylbutanol biosynthesis
AFA_17610	PWY-7013	L-1,2-propanediol degradation
AFA_17610	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFA_17610	PWY-7118	chitin degradation to ethanol
AFA_17610	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AFA_17610	PWY-7798	AFA_17610
AFA_17660	PWY-5028	L-histidine degradation II
AFA_17660	PWY-5030	L-histidine degradation III
AFA_17680	PWY-5028	L-histidine degradation II
AFA_17680	PWY-5030	L-histidine degradation III
AFA_17685	PWY-5028	L-histidine degradation II
AFA_17685	PWY-5030	L-histidine degradation III
AFA_17755	PWY-5913	TCA cycle VI (obligate autotrophs)
AFA_17755	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AFA_17755	PWY-6638	sulfolactate degradation III
AFA_17755	PWY-6642	(<i>R</i>)-cysteate degradation
AFA_17755	PWY-6643	coenzyme M biosynthesis II
AFA_17755	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AFA_17755	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AFA_17755	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AFA_17895	PWY-6164	3-dehydroquinate biosynthesis I
AFA_17900	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFA_17905	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFA_17905	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AFA_17905	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFA_17905	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFA_17915	PWY-2941	L-lysine biosynthesis II
AFA_17915	PWY-2942	L-lysine biosynthesis III
AFA_17915	PWY-5097	L-lysine biosynthesis VI
AFA_17945	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFA_17945	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AFA_18110	PWY-7782	AFA_18110
AFA_18110	PWY-7783	AFA_18110
AFA_18155	PWY-7094	fatty acid salvage
AFA_18155	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AFA_18165	PWY-1361	benzoyl-CoA degradation I (aerobic)
AFA_18165	PWY-5109	2-methylbutanoate biosynthesis
AFA_18165	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AFA_18165	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AFA_18165	PWY-5177	glutaryl-CoA degradation
AFA_18165	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AFA_18165	PWY-6435	4-hydroxybenzoate biosynthesis V
AFA_18165	PWY-6583	pyruvate fermentation to butanol I
AFA_18165	PWY-6863	pyruvate fermentation to hexanol
AFA_18165	PWY-6883	pyruvate fermentation to butanol II
AFA_18165	PWY-6944	androstenedione degradation
AFA_18165	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AFA_18165	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AFA_18165	PWY-7007	methyl ketone biosynthesis
AFA_18165	PWY-7046	4-coumarate degradation (anaerobic)
AFA_18165	PWY-7094	fatty acid salvage
AFA_18165	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AFA_18165	PWY-735	jasmonic acid biosynthesis
AFA_18165	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AFA_18165	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AFA_18165	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AFA_18165	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AFA_18165	PWY-7726	AFA_18165
AFA_18165	PWY-7778	AFA_18165
AFA_18165	PWY-7779	AFA_18165
AFA_18180	PWY-2002	isoflavonoid biosynthesis I
AFA_18180	PWY-5059	pinobanksin biosynthesis
AFA_18180	PWY-6325	echinatin biosynthesis
AFA_18180	PWY-6787	flavonoid biosynthesis (in equisetum)
AFA_18180	PWY-7397	naringenin biosynthesis (engineered)
AFA_18180	PWY-7897	AFA_18180
AFA_18190	PWY-6683	sulfate reduction III (assimilatory)
AFA_18195	PWY-6683	sulfate reduction III (assimilatory)
AFA_18200	PWY-5194	siroheme biosynthesis
AFA_18200	PWY-5196	factor 430 biosynthesis
AFA_18200	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AFA_18450	PWY-5669	phosphatidylethanolamine biosynthesis I
AFA_18515	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
