AFA_00005 PF00308 Bacterial dnaA protein AFA_00005 PF08299 Bacterial dnaA protein helix-turn-helix AFA_00005 PF11638 DnaA N-terminal domain AFA_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AFA_00010 PF02767 DNA polymerase III beta subunit, central domain AFA_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AFA_00015 PF00204 DNA gyrase B AFA_00015 PF00986 DNA gyrase B subunit, carboxyl terminus AFA_00015 PF01751 Toprim domain AFA_00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_00020 PF00849 RNA pseudouridylate synthase AFA_00020 PF01479 S4 domain AFA_00025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_00025 PF03466 LysR substrate binding domain AFA_00030 PF03401 Tripartite tricarboxylate transporter family receptor AFA_00035 PF00171 Aldehyde dehydrogenase family AFA_00040 PF00732 GMC oxidoreductase AFA_00040 PF05199 GMC oxidoreductase AFA_00045 PF03401 Tripartite tricarboxylate transporter family receptor AFA_00050 PF00753 Metallo-beta-lactamase superfamily AFA_00055 PF04828 Glutathione-dependent formaldehyde-activating enzyme AFA_00060 PF00392 Bacterial regulatory proteins, gntR family AFA_00060 PF07729 FCD domain AFA_00065 PF06808 AFA_00065 AFA_00070 PF04290 AFA_00070 AFA_00075 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_00075 PF00175 Oxidoreductase NAD-binding domain AFA_00080 PF00355 Rieske [2Fe-2S] domain AFA_00085 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AFA_00085 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AFA_00090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_00090 PF03466 LysR substrate binding domain AFA_00095 PF00596 Class II Aldolase and Adducin N-terminal domain AFA_00100 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_00105 PF13458 Periplasmic binding protein AFA_00110 PF02653 AFA_00110 AFA_00115 PF02653 AFA_00115 AFA_00120 PF00005 ABC transporter AFA_00120 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_00125 PF00501 AMP-binding enzyme AFA_00125 PF13193 AMP-binding enzyme C-terminal domain AFA_00135 PF12697 Alpha/beta hydrolase family AFA_00140 PF00392 Bacterial regulatory proteins, gntR family AFA_00140 PF07702 UTRA domain AFA_00145 PF00378 Enoyl-CoA hydratase/isomerase family AFA_00155 PF03401 Tripartite tricarboxylate transporter family receptor AFA_00160 PF00392 Bacterial regulatory proteins, gntR family AFA_00160 PF07729 FCD domain AFA_00165 PF00892 EamA-like transporter family AFA_00170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_00170 PF03466 LysR substrate binding domain AFA_00175 PF13343 Bacterial extracellular solute-binding protein AFA_00180 PF00005 ABC transporter AFA_00180 PF08402 TOBE domain AFA_00185 PF00528 Binding-protein-dependent transport system inner membrane component AFA_00190 PF00155 Aminotransferase class I and II AFA_00195 PF13714 Phosphoenolpyruvate phosphomutase AFA_00200 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFA_00200 PF07683 Cobalamin synthesis protein cobW C-terminal domain AFA_00205 PF00107 Zinc-binding dehydrogenase AFA_00205 PF08240 Alcohol dehydrogenase GroES-like domain AFA_00210 PF03401 Tripartite tricarboxylate transporter family receptor AFA_00215 PF07690 Major Facilitator Superfamily AFA_00220 PF13410 Glutathione S-transferase, C-terminal domain AFA_00220 PF13417 Glutathione S-transferase, N-terminal domain AFA_00225 PF06189 AFA_00225 AFA_00230 PF01614 Bacterial transcriptional regulator AFA_00230 PF09339 IclR helix-turn-helix domain AFA_00235 PF00884 Sulfatase AFA_00235 PF16347 AFA_00235 AFA_00240 PF03401 Tripartite tricarboxylate transporter family receptor AFA_00245 PF01047 MarR family AFA_00250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFA_00255 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AFA_00260 PF01047 MarR family AFA_00265 PF03061 Thioesterase superfamily AFA_00270 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFA_00275 PF07883 Cupin domain AFA_00280 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFA_00285 PF00795 Carbon-nitrogen hydrolase AFA_00290 PF04199 Putative cyclase AFA_00295 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_00295 PF00175 Oxidoreductase NAD-binding domain AFA_00295 PF00970 Oxidoreductase FAD-binding domain AFA_00300 PF00355 Rieske [2Fe-2S] domain AFA_00300 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFA_00305 PF00866 Ring hydroxylating beta subunit AFA_00310 PF00501 AMP-binding enzyme AFA_00310 PF13193 AMP-binding enzyme C-terminal domain AFA_00320 PF01796 AFA_00320 AFA_00320 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) AFA_00325 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_00330 PF07690 Major Facilitator Superfamily AFA_00335 PF13411 MerR HTH family regulatory protein AFA_00340 PF04290 AFA_00340 AFA_00345 PF06808 AFA_00345 AFA_00350 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_00360 PF13557 AFA_00360 AFA_00365 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_00375 PF01613 Flavin reductase like domain AFA_00380 PF13450 NAD(P)-binding Rossmann-like domain AFA_00385 PF12833 Helix-turn-helix domain AFA_00385 PF14525 AFA_00385 AFA_00390 PF01613 Flavin reductase like domain AFA_00395 PF00005 ABC transporter AFA_00405 PF02261 Aspartate decarboxylase AFA_00410 PF00005 ABC transporter AFA_00410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFA_00415 PF00005 ABC transporter AFA_00415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFA_00420 PF00528 Binding-protein-dependent transport system inner membrane component AFA_00425 PF00528 Binding-protein-dependent transport system inner membrane component AFA_00430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFA_00435 PF00817 impB/mucB/samB family AFA_00435 PF11799 impB/mucB/samB family C-terminal domain AFA_00440 PF04542 Sigma-70 region 2 AFA_00440 PF08281 Sigma-70, region 4 AFA_00445 PF04773 FecR protein AFA_00445 PF16220 AFA_00445 AFA_00450 PF00593 TonB dependent receptor AFA_00450 PF07660 Secretin and TonB N terminus short domain AFA_00450 PF07715 TonB-dependent Receptor Plug Domain AFA_00455 PF00144 Beta-lactamase AFA_00460 PF00202 Aminotransferase class-III AFA_00465 PF01381 Helix-turn-helix AFA_00470 PF05016 Plasmid stabilisation system protein AFA_00475 PF03180 NLPA lipoprotein AFA_00480 PF03180 NLPA lipoprotein AFA_00485 PF00005 ABC transporter AFA_00485 PF09383 NIL domain AFA_00490 PF00528 Binding-protein-dependent transport system inner membrane component AFA_00495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_00495 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFA_00500 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_00500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_00500 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFA_00505 PF00296 Luciferase-like monooxygenase AFA_00510 PF03180 NLPA lipoprotein AFA_00515 PF00296 Luciferase-like monooxygenase AFA_00520 PF03180 NLPA lipoprotein AFA_00525 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_00525 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFA_00530 PF04909 Amidohydrolase AFA_00535 PF00296 Luciferase-like monooxygenase AFA_00540 PF03358 NADPH-dependent FMN reductase AFA_00545 PF12973 ChrR Cupin-like domain AFA_00550 PF12833 Helix-turn-helix domain AFA_00550 PF14525 AFA_00550 AFA_00555 PF01925 AFA_00555 AFA_00560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_00560 PF03466 LysR substrate binding domain AFA_00565 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFA_00565 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFA_00570 PF00528 Binding-protein-dependent transport system inner membrane component AFA_00575 PF13531 Bacterial extracellular solute-binding protein AFA_00580 PF01274 Malate synthase AFA_00590 PF01048 Phosphorylase superfamily AFA_00590 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus AFA_00595 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_00600 PF06808 AFA_00600 AFA_00605 PF04290 AFA_00605 AFA_00610 PF00856 SET domain AFA_00615 PF00205 Thiamine pyrophosphate enzyme, central domain AFA_00615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFA_00615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFA_00620 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_00625 PF04290 AFA_00625 AFA_00630 PF06808 AFA_00630 AFA_00640 PF02661 Fic/DOC family AFA_00645 PF01131 DNA topoisomerase AFA_00645 PF01751 Toprim domain AFA_00645 PF13342 AFA_00645 AFA_00660 PF04361 AFA_00660 AFA_00665 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFA_00670 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AFA_00670 PF00364 Biotin-requiring enzyme AFA_00670 PF02785 Biotin carboxylase C-terminal domain AFA_00670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFA_00675 PF01039 Carboxyl transferase domain AFA_00680 PF00108 Thiolase, N-terminal domain AFA_00680 PF02803 Thiolase, C-terminal domain AFA_00685 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AFA_00690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_00690 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_00690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_00695 PF13411 MerR HTH family regulatory protein AFA_00700 PF00753 Metallo-beta-lactamase superfamily AFA_00705 PF01053 Cys/Met metabolism PLP-dependent enzyme AFA_00710 PF01323 DSBA-like thioredoxin domain AFA_00715 PF05036 Sporulation related domain AFA_00720 PF00750 tRNA synthetases class I (R) AFA_00720 PF03485 Arginyl tRNA synthetase N terminal domain AFA_00720 PF05746 DALR anticodon binding domain AFA_00725 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) AFA_00730 PF08895 AFA_00730 AFA_00745 PF09234 Domain of unknown function (DUF1963) AFA_00750 PF00682 HMGL-like AFA_00750 PF08502 LeuA allosteric (dimerisation) domain AFA_00760 PF00309 AFA_00760 AFA_00760 PF04552 Sigma-54, DNA binding domain AFA_00760 PF04963 Sigma-54 factor, core binding domain AFA_00765 PF00593 TonB dependent receptor AFA_00765 PF07715 TonB-dependent Receptor Plug Domain AFA_00770 PF00694 Aconitase C-terminal domain AFA_00775 PF00330 Aconitase family (aconitate hydratase) AFA_00780 PF00682 HMGL-like AFA_00785 PF02515 CoA-transferase family III AFA_00790 PF06808 AFA_00790 AFA_00795 PF04290 AFA_00795 AFA_00800 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_00805 PF00857 Isochorismatase family AFA_00810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_00810 PF03466 LysR substrate binding domain AFA_00815 PF04324 BFD-like [2Fe-2S] binding domain AFA_00820 PF00210 Ferritin-like domain AFA_00830 PF00009 Elongation factor Tu GTP binding domain AFA_00830 PF03144 Elongation factor Tu domain 2 AFA_00830 PF16658 AFA_00830 AFA_00835 PF01810 AFA_00835 AFA_00840 PF00270 DEAD/DEAH box helicase AFA_00840 PF00271 Helicase conserved C-terminal domain AFA_00845 PF04011 LemA family AFA_00850 PF04536 TLP18 AFA_00855 PF04536 TLP18 AFA_00860 PF11067 AFA_00860 AFA_00865 PF01926 50S ribosome-binding GTPase AFA_00865 PF11981 AFA_00865 AFA_00870 PF04343 AFA_00870 AFA_00875 PF04226 AFA_00875 AFA_00885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_00885 PF03466 LysR substrate binding domain AFA_00895 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_00900 PF04290 AFA_00900 AFA_00905 PF06808 AFA_00905 AFA_00910 PF01436 NHL repeat AFA_00915 PF02405 AFA_00915 AFA_00915 PF13466 STAS domain AFA_00920 PF00005 ABC transporter AFA_00925 PF02470 AFA_00925 AFA_00930 PF03886 Protein of unknown function (DUF330) AFA_00940 PF13419 Haloacid dehalogenase-like hydrolase AFA_00945 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_00950 PF04290 AFA_00950 AFA_00955 PF06808 AFA_00955 AFA_00970 PF00501 AMP-binding enzyme AFA_00970 PF13193 AMP-binding enzyme C-terminal domain AFA_00975 PF03401 Tripartite tricarboxylate transporter family receptor AFA_00980 PF00023 Ankyrin repeat AFA_00985 PF00392 Bacterial regulatory proteins, gntR family AFA_00985 PF07729 FCD domain AFA_00990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_00990 PF03466 LysR substrate binding domain AFA_00995 PF01266 FAD dependent oxidoreductase AFA_01000 PF01757 AFA_01000 AFA_01005 PF02646 AFA_01005 AFA_01010 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_01010 PF00563 EAL domain AFA_01010 PF00990 GGDEF domain AFA_01010 PF08448 PAS fold AFA_01015 PF00708 Acylphosphatase AFA_01020 PF01380 SIS domain AFA_01025 PF16868 AFA_01025 AFA_01030 PF06808 AFA_01030 AFA_01030 PF11874 AFA_01030 AFA_01035 PF00849 RNA pseudouridylate synthase AFA_01040 PF00710 Asparaginase AFA_01045 PF00528 Binding-protein-dependent transport system inner membrane component AFA_01050 PF00528 Binding-protein-dependent transport system inner membrane component AFA_01055 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_01060 PF00005 ABC transporter AFA_01065 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFA_01065 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFA_01070 PF01168 Alanine racemase, N-terminal domain AFA_01075 PF03401 Tripartite tricarboxylate transporter family receptor AFA_01080 PF00027 Cyclic nucleotide-binding domain AFA_01080 PF13545 Crp-like helix-turn-helix domain AFA_01085 PF00501 AMP-binding enzyme AFA_01090 PF00005 ABC transporter AFA_01090 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_01095 PF02653 AFA_01095 AFA_01100 PF02653 AFA_01100 AFA_01105 PF13458 Periplasmic binding protein AFA_01110 PF00005 ABC transporter AFA_01115 PF00501 AMP-binding enzyme AFA_01115 PF14535 AMP-binding enzyme C-terminal domain AFA_01120 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_01130 PF00682 HMGL-like AFA_01135 PF02481 DNA recombination-mediator protein A AFA_01140 PF01327 Polypeptide deformylase AFA_01145 PF00551 Formyl transferase AFA_01145 PF02911 Formyl transferase, C-terminal domain AFA_01150 PF00892 EamA-like transporter family AFA_01155 PF01425 Amidase AFA_01160 PF11010 AFA_01160 AFA_01165 PF06808 AFA_01165 AFA_01170 PF04290 AFA_01170 AFA_01175 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_01180 PF07286 Protein of unknown function (DUF1445) AFA_01185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_01185 PF03466 LysR substrate binding domain AFA_01190 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AFA_01195 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AFA_01200 PF00313 'Cold-shock' DNA-binding domain AFA_01205 PF00483 Nucleotidyl transferase AFA_01210 PF03309 Type III pantothenate kinase AFA_01215 PF02237 Biotin protein ligase C terminal domain AFA_01215 PF03099 Biotin/lipoate A/B protein ligase family AFA_01220 PF03959 Serine hydrolase (FSH1) AFA_01225 PF00768 D-alanyl-D-alanine carboxypeptidase AFA_01225 PF07943 Penicillin-binding protein 5, C-terminal domain AFA_01230 PF01063 Aminotransferase class IV AFA_01235 PF04359 Protein of unknown function (DUF493) AFA_01240 PF03099 Biotin/lipoate A/B protein ligase family AFA_01245 PF00378 Enoyl-CoA hydratase/isomerase family AFA_01250 PF04055 Radical SAM superfamily AFA_01250 PF16881 AFA_01250 AFA_01260 PF03167 Uracil DNA glycosylase superfamily AFA_01295 PF00027 Cyclic nucleotide-binding domain AFA_01295 PF13545 Crp-like helix-turn-helix domain AFA_01305 PF10006 AFA_01305 AFA_01310 PF01136 AFA_01310 AFA_01315 PF01136 AFA_01315 AFA_01320 PF02036 SCP-2 sterol transfer family AFA_01325 PF04055 Radical SAM superfamily AFA_01325 PF13353 4Fe-4S single cluster domain AFA_01330 PF13597 Anaerobic ribonucleoside-triphosphate reductase AFA_01335 PF13597 Anaerobic ribonucleoside-triphosphate reductase AFA_01340 PF01230 HIT domain AFA_01345 PF00218 Indole-3-glycerol phosphate synthase AFA_01350 PF00591 Glycosyl transferase family, a/b domain AFA_01350 PF02885 Glycosyl transferase family, helical bundle domain AFA_01355 PF00117 Glutamine amidotransferase class-I AFA_01360 PF00425 chorismate binding enzyme AFA_01360 PF04715 Anthranilate synthase component I, N terminal region AFA_01365 PF13419 Haloacid dehalogenase-like hydrolase AFA_01370 PF00563 EAL domain AFA_01370 PF00990 GGDEF domain AFA_01375 PF00834 Ribulose-phosphate 3 epimerase family AFA_01380 PF04379 Protein of unknown function (DUF525) AFA_01385 PF03562 MltA specific insert domain AFA_01385 PF06725 3D domain AFA_01390 PF01494 FAD binding domain AFA_01395 PF10411 Disulfide bond isomerase protein N-terminus AFA_01395 PF13098 Thioredoxin-like domain AFA_01400 PF00486 Transcriptional regulatory protein, C terminal AFA_01400 PF00563 EAL domain AFA_01405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFA_01405 PF17200 AFA_01405 AFA_01410 PF00756 Putative esterase AFA_01410 PF11806 Domain of unknown function (DUF3327) AFA_01415 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_01420 PF00857 Isochorismatase family AFA_01425 PF00425 chorismate binding enzyme AFA_01430 PF08450 SMP-30/Gluconolaconase/LRE-like region AFA_01435 PF05977 Transmembrane secretion effector AFA_01440 PF00501 AMP-binding enzyme AFA_01440 PF00550 Phosphopantetheine attachment site AFA_01440 PF00668 Condensation domain AFA_01440 PF00975 Thioesterase domain AFA_01440 PF13193 AMP-binding enzyme C-terminal domain AFA_01445 PF00550 Phosphopantetheine attachment site AFA_01450 PF00501 AMP-binding enzyme AFA_01450 PF13193 AMP-binding enzyme C-terminal domain AFA_01455 PF01648 4'-phosphopantetheinyl transferase superfamily AFA_01460 PF00005 ABC transporter AFA_01465 PF00005 ABC transporter AFA_01470 PF02653 AFA_01470 AFA_01475 PF02653 AFA_01475 AFA_01480 PF13458 Periplasmic binding protein AFA_01485 PF12802 MarR family AFA_01490 PF00528 Binding-protein-dependent transport system inner membrane component AFA_01495 PF00528 Binding-protein-dependent transport system inner membrane component AFA_01500 PF00005 ABC transporter AFA_01505 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein AFA_01510 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFA_01510 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFA_01515 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AFA_01515 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain AFA_01525 PF01497 Periplasmic binding protein AFA_01530 PF00005 ABC transporter AFA_01535 PF01032 FecCD transport family AFA_01540 PF12146 Putative lysophospholipase AFA_01545 PF00271 Helicase conserved C-terminal domain AFA_01545 PF12513 Mitochondrial degradasome RNA helicase subunit C terminal AFA_01550 PF07690 Major Facilitator Superfamily AFA_01555 PF04657 AFA_01555 AFA_01560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_01560 PF03466 LysR substrate binding domain AFA_01565 PF04773 FecR protein AFA_01565 PF16220 AFA_01565 AFA_01565 PF16344 AFA_01565 AFA_01570 PF00571 CBS domain AFA_01570 PF03471 Transporter associated domain AFA_01570 PF03741 AFA_01570 AFA_01575 PF04116 AFA_01575 AFA_01580 PF00487 AFA_01580 AFA_01585 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFA_01585 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFA_01585 PF14518 Iron-containing redox enzyme AFA_01595 PF01063 Aminotransferase class IV AFA_01600 PF04235 AFA_01600 AFA_01605 PF00440 Bacterial regulatory proteins, tetR family AFA_01605 PF13977 Bacterial transcriptional repressor AFA_01610 PF13673 Acetyltransferase (GNAT) domain AFA_01615 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFA_01620 PF01177 Asp/Glu/Hydantoin racemase AFA_01625 PF01613 Flavin reductase like domain AFA_01630 PF01546 Peptidase family M20/M25/M40 AFA_01635 PF01979 Amidohydrolase family AFA_01640 PF01979 Amidohydrolase family AFA_01645 PF00528 Binding-protein-dependent transport system inner membrane component AFA_01650 PF00005 ABC transporter AFA_01655 PF09084 NMT1/THI5 like AFA_01660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_01660 PF03466 LysR substrate binding domain AFA_01665 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_01670 PF00005 ABC transporter AFA_01675 PF00528 Binding-protein-dependent transport system inner membrane component AFA_01680 PF00528 Binding-protein-dependent transport system inner membrane component AFA_01685 PF00701 Dihydrodipicolinate synthetase family AFA_01690 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFA_01690 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFA_01695 PF00171 Aldehyde dehydrogenase family AFA_01700 PF13557 AFA_01700 AFA_01705 PF06433 Methylamine dehydrogenase heavy chain (MADH) AFA_01710 PF07291 AFA_01710 AFA_01715 PF13098 Thioredoxin-like domain AFA_01720 PF02975 Methylamine dehydrogenase, L chain AFA_01730 PF12833 Helix-turn-helix domain AFA_01730 PF14525 AFA_01730 AFA_01740 PF01208 Uroporphyrinogen decarboxylase (URO-D) AFA_01745 PF00270 DEAD/DEAH box helicase AFA_01745 PF00271 Helicase conserved C-terminal domain AFA_01750 PF00580 UvrD/REP helicase N-terminal domain AFA_01750 PF13361 UvrD-like helicase C-terminal domain AFA_01765 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_01765 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AFA_01770 PF00310 Glutamine amidotransferases class-II AFA_01770 PF01493 GXGXG motif AFA_01770 PF01645 Conserved region in glutamate synthase AFA_01770 PF04898 Glutamate synthase central domain AFA_01775 PF00378 Enoyl-CoA hydratase/isomerase family AFA_01780 PF03060 Nitronate monooxygenase AFA_01785 PF02515 CoA-transferase family III AFA_01790 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFA_01790 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFA_01795 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_01810 PF00593 TonB dependent receptor AFA_01810 PF07715 TonB-dependent Receptor Plug Domain AFA_01815 PF04262 Glutamate-cysteine ligase AFA_01825 PF00196 Bacterial regulatory proteins, luxR family AFA_01830 PF00561 alpha/beta hydrolase fold AFA_01835 PF07021 Methionine biosynthesis protein MetW AFA_01840 PF07690 Major Facilitator Superfamily AFA_01845 PF03458 AFA_01845 AFA_01850 PF04172 AFA_01850 AFA_01855 PF03788 AFA_01855 AFA_01860 PF01042 Endoribonuclease L-PSP AFA_01865 PF01042 Endoribonuclease L-PSP AFA_01870 PF09830 ATP adenylyltransferase AFA_01875 PF00072 Response regulator receiver domain AFA_01875 PF12833 Helix-turn-helix domain AFA_01885 PF00486 Transcriptional regulatory protein, C terminal AFA_01890 PF00474 Sodium:solute symporter family AFA_01900 PF01810 AFA_01900 AFA_01905 PF01411 tRNA synthetases class II (A) AFA_01905 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFA_01910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_01910 PF03466 LysR substrate binding domain AFA_01915 PF02627 Carboxymuconolactone decarboxylase family AFA_01920 PF00202 Aminotransferase class-III AFA_01925 PF01380 SIS domain AFA_01925 PF01418 Helix-turn-helix domain, rpiR family AFA_01930 PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase AFA_01935 PF01923 Cobalamin adenosyltransferase AFA_01940 PF00583 Acetyltransferase (GNAT) family AFA_01945 PF11604 Copper binding periplasmic protein CusF AFA_01950 PF00004 ATPase family associated with various cellular activities (AAA) AFA_01950 PF07724 AAA domain (Cdc48 subfamily) AFA_01955 PF00227 Proteasome subunit AFA_01965 PF01258 Prokaryotic dksA/traR C4-type zinc finger AFA_01970 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFA_01970 PF07683 Cobalamin synthesis protein cobW C-terminal domain AFA_01975 PF01475 Ferric uptake regulator family AFA_01980 PF00005 ABC transporter AFA_01985 PF00950 AFA_01985 AFA_01990 PF01297 Periplasmic solute binding protein family AFA_01995 PF00589 Phage integrase family AFA_01995 PF02899 Phage integrase, N-terminal SAM-like domain AFA_02000 PF04340 Protein of unknown function, DUF484 AFA_02005 PF01678 Diaminopimelate epimerase AFA_02010 PF03279 AFA_02010 AFA_02015 PF03279 AFA_02015 AFA_02020 PF00438 S-adenosylmethionine synthetase, N-terminal domain AFA_02020 PF02772 S-adenosylmethionine synthetase, central domain AFA_02020 PF02773 S-adenosylmethionine synthetase, C-terminal domain AFA_02025 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AFA_02025 PF05221 S-adenosyl-L-homocysteine hydrolase AFA_02030 PF04020 AFA_02030 AFA_02035 PF02219 Methylenetetrahydrofolate reductase AFA_02040 PF01812 5-formyltetrahydrofolate cyclo-ligase family AFA_02045 PF01464 Transglycosylase SLT domain AFA_02045 PF14718 Soluble lytic murein transglycosylase L domain AFA_02050 PF01743 Poly A polymerase head domain AFA_02050 PF12627 Probable RNA and SrmB- binding site of polymerase A AFA_02055 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase AFA_02065 PF13649 Methyltransferase domain AFA_02070 PF01925 AFA_02070 AFA_02075 PF00311 Phosphoenolpyruvate carboxylase AFA_02080 PF00920 Dehydratase family AFA_02085 PF12973 ChrR Cupin-like domain AFA_02090 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_02095 PF04290 AFA_02095 AFA_02100 PF06808 AFA_02100 AFA_02105 PF01425 Amidase AFA_02110 PF00392 Bacterial regulatory proteins, gntR family AFA_02110 PF07729 FCD domain AFA_02115 PF02540 NAD synthase AFA_02120 PF01614 Bacterial transcriptional regulator AFA_02120 PF09339 IclR helix-turn-helix domain AFA_02125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_02125 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_02125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_02130 PF02515 CoA-transferase family III AFA_02135 PF03401 Tripartite tricarboxylate transporter family receptor AFA_02140 PF07883 Cupin domain AFA_02145 PF01594 AFA_02145 AFA_02155 PF02384 N-6 DNA Methylase AFA_02155 PF12161 HsdM N-terminal domain AFA_02160 PF01420 Type I restriction modification DNA specificity domain AFA_02165 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AFA_02165 PF04851 Type III restriction enzyme, res subunit AFA_02165 PF11867 AFA_02165 AFA_02170 PF01863 Protein of unknown function DUF45 AFA_02175 PF04471 Restriction endonuclease AFA_02180 PF02417 AFA_02180 AFA_02185 PF00884 Sulfatase AFA_02190 PF03401 Tripartite tricarboxylate transporter family receptor AFA_02195 PF01047 MarR family AFA_02200 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_02200 PF00175 Oxidoreductase NAD-binding domain AFA_02200 PF00970 Oxidoreductase FAD-binding domain AFA_02205 PF00583 Acetyltransferase (GNAT) family AFA_02210 PF01565 FAD binding domain AFA_02210 PF09330 D-lactate dehydrogenase, membrane binding AFA_02215 PF01070 FMN-dependent dehydrogenase AFA_02220 PF00392 Bacterial regulatory proteins, gntR family AFA_02220 PF07729 FCD domain AFA_02225 PF02652 AFA_02225 AFA_02235 PF00392 Bacterial regulatory proteins, gntR family AFA_02235 PF07702 UTRA domain AFA_02240 PF01037 AsnC family AFA_02240 PF13412 Winged helix-turn-helix DNA-binding AFA_02245 PF00266 Aminotransferase class-V AFA_02250 PF00324 Amino acid permease AFA_02255 PF07969 Amidohydrolase family AFA_02260 PF00455 AFA_02260 AFA_02260 PF08220 DeoR-like helix-turn-helix domain AFA_02265 PF00005 ABC transporter AFA_02265 PF08402 TOBE domain AFA_02270 PF13416 Bacterial extracellular solute-binding protein AFA_02275 PF00528 Binding-protein-dependent transport system inner membrane component AFA_02280 PF00528 Binding-protein-dependent transport system inner membrane component AFA_02285 PF00149 Calcineurin-like phosphoesterase AFA_02295 PF03741 AFA_02295 AFA_02300 PF13616 PPIC-type PPIASE domain AFA_02310 PF02639 AFA_02310 AFA_02315 PF12643 AFA_02315 AFA_02320 PF01966 HD domain AFA_02325 PF03401 Tripartite tricarboxylate transporter family receptor AFA_02330 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFA_02330 PF13378 Enolase C-terminal domain-like AFA_02335 PF01479 S4 domain AFA_02340 PF07690 Major Facilitator Superfamily AFA_02345 PF00440 Bacterial regulatory proteins, tetR family AFA_02350 PF01794 AFA_02350 AFA_02350 PF08022 AFA_02350 AFA_02355 PF01425 Amidase AFA_02360 PF03401 Tripartite tricarboxylate transporter family receptor AFA_02365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_02365 PF03466 LysR substrate binding domain AFA_02370 PF12833 Helix-turn-helix domain AFA_02370 PF12852 Cupin AFA_02375 PF02627 Carboxymuconolactone decarboxylase family AFA_02380 PF08803 Putative mono-oxygenase ydhR AFA_02385 PF00892 EamA-like transporter family AFA_02390 PF00183 Hsp90 protein AFA_02390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_02395 PF00593 TonB dependent receptor AFA_02395 PF07715 TonB-dependent Receptor Plug Domain AFA_02400 PF13640 2OG-Fe(II) oxygenase superfamily AFA_02405 PF01070 FMN-dependent dehydrogenase AFA_02410 PF01510 N-acetylmuramoyl-L-alanine amidase AFA_02420 PF01578 AFA_02420 AFA_02425 PF00448 SRP54-type protein, GTPase domain AFA_02425 PF02881 SRP54-type protein, helical bundle domain AFA_02425 PF02978 Signal peptide binding domain AFA_02435 PF01476 LysM domain AFA_02435 PF04972 BON domain AFA_02440 PF02597 ThiS family AFA_02445 PF00561 alpha/beta hydrolase fold AFA_02450 PF02390 Putative methyltransferase AFA_02470 PF01904 Protein of unknown function DUF72 AFA_02480 PF01381 Helix-turn-helix AFA_02485 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_02490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_02490 PF03466 LysR substrate binding domain AFA_02495 PF01699 Sodium/calcium exchanger protein AFA_02500 PF00072 Response regulator receiver domain AFA_02500 PF12833 Helix-turn-helix domain AFA_02505 PF01323 DSBA-like thioredoxin domain AFA_02510 PF00083 Sugar (and other) transporter AFA_02515 PF00596 Class II Aldolase and Adducin N-terminal domain AFA_02520 PF08761 dUTPase AFA_02520 PF13302 Acetyltransferase (GNAT) domain AFA_02530 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFA_02535 PF07883 Cupin domain AFA_02540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_02540 PF03466 LysR substrate binding domain AFA_02545 PF01545 Cation efflux family AFA_02545 PF16916 AFA_02545 AFA_02550 PF01588 Putative tRNA binding domain AFA_02550 PF09334 tRNA synthetases class I (M) AFA_02560 PF10609 ParA/MinD ATPase like AFA_02565 PF01103 Surface antigen AFA_02565 PF17243 AFA_02565 AFA_02570 PF04357 AFA_02570 AFA_02575 PF00692 dUTPase AFA_02580 PF01276 Orn/Lys/Arg decarboxylase, major domain AFA_02580 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AFA_02580 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AFA_02585 PF03486 HI0933-like protein AFA_02590 PF01597 Glycine cleavage H-protein AFA_02595 PF00186 Dihydrofolate reductase AFA_02600 PF00303 Thymidylate synthase AFA_02605 PF02566 OsmC-like protein AFA_02610 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFA_02615 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO AFA_02620 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_02625 PF02630 SCO1/SenC AFA_02635 PF03232 AFA_02635 AFA_02640 PF00224 Pyruvate kinase, barrel domain AFA_02640 PF02887 Pyruvate kinase, alpha/beta domain AFA_02645 PF03928 Domain of unknown function (DUF336) AFA_02650 PF05161 MOFRL family AFA_02650 PF13660 Domain of unknown function (DUF4147) AFA_02655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFA_02655 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFA_02660 PF01261 Xylose isomerase-like TIM barrel AFA_02665 PF00205 Thiamine pyrophosphate enzyme, central domain AFA_02665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFA_02665 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFA_02670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_02670 PF03466 LysR substrate binding domain AFA_02680 PF00860 Permease family AFA_02685 PF01361 Tautomerase enzyme AFA_02690 PF00596 Class II Aldolase and Adducin N-terminal domain AFA_02695 PF04115 Ureidoglycolate hydrolase AFA_02700 PF09349 OHCU decarboxylase AFA_02705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_02705 PF03466 LysR substrate binding domain AFA_02710 PF00953 Glycosyl transferase family 4 AFA_02715 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFA_02715 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFA_02715 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFA_02720 PF01370 NAD dependent epimerase/dehydratase family AFA_02725 PF03023 AFA_02725 AFA_02730 PF00534 Glycosyl transferases group 1 AFA_02730 PF13439 Glycosyltransferase Family 4 AFA_02735 PF00534 Glycosyl transferases group 1 AFA_02735 PF13439 Glycosyltransferase Family 4 AFA_02740 PF00534 Glycosyl transferases group 1 AFA_02740 PF13439 Glycosyltransferase Family 4 AFA_02740 PF13477 Glycosyl transferase 4-like AFA_02745 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFA_02745 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFA_02745 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFA_02745 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFA_02750 PF01565 FAD binding domain AFA_02750 PF02913 FAD linked oxidases, C-terminal domain AFA_02755 PF01569 PAP2 superfamily AFA_02760 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFA_02760 PF09298 Fumarylacetoacetase N-terminal AFA_02765 PF04209 homogentisate 1,2-dioxygenase AFA_02770 PF10932 AFA_02770 AFA_02775 PF01494 FAD binding domain AFA_02780 PF00753 Metallo-beta-lactamase superfamily AFA_02785 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFA_02785 PF06827 Zinc finger found in FPG and IleRS AFA_02785 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFA_02790 PF13424 Tetratricopeptide repeat AFA_02790 PF13432 Tetratricopeptide repeat AFA_02790 PF14559 Tetratricopeptide repeat AFA_02795 PF03550 Outer membrane lipoprotein LolB AFA_02800 PF00288 GHMP kinases N terminal domain AFA_02800 PF08544 GHMP kinases C terminal AFA_02810 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AFA_02810 PF14572 Phosphoribosyl synthetase-associated domain AFA_02815 PF01386 Ribosomal L25p family AFA_02815 PF14693 Ribosomal protein TL5, C-terminal domain AFA_02820 PF01195 Peptidyl-tRNA hydrolase AFA_02825 PF02517 CAAX protease self-immunity AFA_02830 PF01926 50S ribosome-binding GTPase AFA_02830 PF06071 Protein of unknown function (DUF933) AFA_02835 PF03783 Curli production assembly/transport component CsgG AFA_02840 PF16068 AFA_02840 AFA_02845 PF05643 Putative bacterial lipoprotein (DUF799) AFA_02850 PF02311 AraC-like ligand binding domain AFA_02850 PF12833 Helix-turn-helix domain AFA_02855 PF00892 EamA-like transporter family AFA_02860 PF00005 ABC transporter AFA_02865 PF13743 Thioredoxin AFA_02870 PF00484 Carbonic anhydrase AFA_02875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_02875 PF03466 LysR substrate binding domain AFA_02880 PF04115 Ureidoglycolate hydrolase AFA_02885 PF00005 ABC transporter AFA_02890 PF03379 AFA_02890 AFA_02895 PF01578 AFA_02895 AFA_02900 PF04995 AFA_02900 AFA_02905 PF03100 CcmE AFA_02910 PF01578 AFA_02910 AFA_02910 PF16327 AFA_02910 AFA_02915 PF08534 Redoxin AFA_02920 PF03918 Cytochrome C biogenesis protein AFA_02930 PF02683 AFA_02930 AFA_02935 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_02940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFA_02940 PF02805 Metal binding domain of Ada AFA_02940 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFA_02940 PF12833 Helix-turn-helix domain AFA_02945 PF00403 Heavy-metal-associated domain AFA_02950 PF08816 Inhibitor of vertebrate lysozyme (Ivy) AFA_02955 PF13458 Periplasmic binding protein AFA_02960 PF02653 AFA_02960 AFA_02965 PF02653 AFA_02965 AFA_02970 PF00005 ABC transporter AFA_02970 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_02975 PF00005 ABC transporter AFA_02980 PF00034 Cytochrome c AFA_02980 PF03150 Di-haem cytochrome c peroxidase AFA_02985 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFA_02985 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFA_02990 PF02082 Transcriptional regulator AFA_02995 PF01152 Bacterial-like globin AFA_03000 PF00535 Glycosyl transferase family 2 AFA_03005 PF13231 AFA_03005 AFA_03010 PF04138 AFA_03010 AFA_03015 PF04794 YdjC-like protein AFA_03020 PF04273 Putative phosphatase (DUF442) AFA_03025 PF00582 Universal stress protein family AFA_03030 PF11390 AFA_03030 AFA_03035 PF02634 FdhD/NarQ family AFA_03040 PF00384 Molybdopterin oxidoreductase AFA_03040 PF01568 Molydopterin dinucleotide binding domain AFA_03040 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFA_03040 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFA_03040 PF13187 4Fe-4S dicluster domain AFA_03040 PF13510 2Fe-2S iron-sulfur cluster binding domain AFA_03045 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFA_03045 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFA_03050 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AFA_03055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_03055 PF12727 PBP superfamily domain AFA_03060 PF04055 Radical SAM superfamily AFA_03060 PF06463 Molybdenum Cofactor Synthesis C AFA_03060 PF13353 4Fe-4S single cluster domain AFA_03065 PF12804 MobA-like NTP transferase domain AFA_03070 PF00994 Probable molybdopterin binding domain AFA_03070 PF03453 MoeA N-terminal region (domain I and II) AFA_03070 PF03454 MoeA C-terminal region (domain IV) AFA_03075 PF00994 Probable molybdopterin binding domain AFA_03080 PF02391 MoaE protein AFA_03085 PF02597 ThiS family AFA_03090 PF01967 MoaC family AFA_03095 PF00072 Response regulator receiver domain AFA_03095 PF00196 Bacterial regulatory proteins, luxR family AFA_03100 PF00512 His Kinase A (phospho-acceptor) domain AFA_03100 PF00989 PAS fold AFA_03100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_03105 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_03110 PF04290 AFA_03110 AFA_03115 PF06808 AFA_03115 AFA_03120 PF08534 Redoxin AFA_03125 PF00083 Sugar (and other) transporter AFA_03125 PF07690 Major Facilitator Superfamily AFA_03135 PF04055 Radical SAM superfamily AFA_03135 PF06968 Biotin and Thiamin Synthesis associated domain AFA_03140 PF03061 Thioesterase superfamily AFA_03145 PF11697 AFA_03145 AFA_03150 PF00873 AcrB/AcrD/AcrF family AFA_03155 PF16576 AFA_03155 AFA_03160 PF00440 Bacterial regulatory proteins, tetR family AFA_03195 PF00563 EAL domain AFA_03195 PF00990 GGDEF domain AFA_03195 PF13426 PAS domain AFA_03200 PF00795 Carbon-nitrogen hydrolase AFA_03205 PF00571 CBS domain AFA_03205 PF03471 Transporter associated domain AFA_03210 PF02130 Uncharacterized protein family UPF0054 AFA_03215 PF02562 PhoH-like protein AFA_03220 PF00919 Uncharacterized protein family UPF0004 AFA_03220 PF01938 TRAM domain AFA_03220 PF04055 Radical SAM superfamily AFA_03225 PF11903 AFA_03225 AFA_03230 PF00557 Metallopeptidase family M24 AFA_03235 PF02355 Protein export membrane protein AFA_03235 PF07549 SecD/SecF GG Motif AFA_03240 PF02355 Protein export membrane protein AFA_03240 PF07549 SecD/SecF GG Motif AFA_03240 PF13721 SecD export protein N-terminal TM region AFA_03245 PF02699 Preprotein translocase subunit AFA_03250 PF01702 Queuine tRNA-ribosyltransferase AFA_03255 PF02547 Queuosine biosynthesis protein AFA_03260 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AFA_03265 PF14681 Uracil phosphoribosyltransferase AFA_03275 PF05957 AFA_03275 AFA_03280 PF07332 AFA_03280 AFA_03290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_03290 PF03466 LysR substrate binding domain AFA_03295 PF00355 Rieske [2Fe-2S] domain AFA_03295 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFA_03300 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_03300 PF00175 Oxidoreductase NAD-binding domain AFA_03300 PF00970 Oxidoreductase FAD-binding domain AFA_03305 PF01370 NAD dependent epimerase/dehydratase family AFA_03315 PF06545 Protein of unknown function (DUF1116) AFA_03320 PF01425 Amidase AFA_03330 PF00083 Sugar (and other) transporter AFA_03335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_03335 PF03466 LysR substrate binding domain AFA_03340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFA_03345 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AFA_03350 PF01464 Transglycosylase SLT domain AFA_03355 PF00155 Aminotransferase class I and II AFA_03365 PF00390 Malic enzyme, N-terminal domain AFA_03365 PF01515 Phosphate acetyl/butaryl transferase AFA_03365 PF03949 Malic enzyme, NAD binding domain AFA_03370 PF01734 Patatin-like phospholipase AFA_03375 PF01337 Barstar (barnase inhibitor) AFA_03380 PF04452 RNA methyltransferase AFA_03385 PF00456 Transketolase, thiamine diphosphate binding domain AFA_03385 PF02779 Transketolase, pyrimidine binding domain AFA_03385 PF02780 Transketolase, C-terminal domain AFA_03390 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFA_03390 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFA_03395 PF00162 Phosphoglycerate kinase AFA_03400 PF15919 AFA_03400 AFA_03405 PF01370 NAD dependent epimerase/dehydratase family AFA_03410 PF00171 Aldehyde dehydrogenase family AFA_03415 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_03420 PF00994 Probable molybdopterin binding domain AFA_03425 PF01116 Fructose-bisphosphate aldolase class-II AFA_03430 PF01259 SAICAR synthetase AFA_03435 PF00731 AIR carboxylase AFA_03440 PF02222 ATP-grasp domain AFA_03445 PF01300 Telomere recombination AFA_03445 PF03481 Putative GTP-binding controlling metal-binding AFA_03450 PF12697 Alpha/beta hydrolase family AFA_03460 PF01575 MaoC like domain AFA_03465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_03465 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_03465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_03470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_03470 PF03466 LysR substrate binding domain AFA_03475 PF01019 Gamma-glutamyltranspeptidase AFA_03480 PF00551 Formyl transferase AFA_03485 PF01266 FAD dependent oxidoreductase AFA_03490 PF01613 Flavin reductase like domain AFA_03495 PF01243 Pyridoxamine 5'-phosphate oxidase AFA_03495 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AFA_03500 PF04752 AFA_03500 AFA_03505 PF00899 ThiF family AFA_03510 PF01063 Aminotransferase class IV AFA_03515 PF00425 chorismate binding enzyme AFA_03520 PF00005 ABC transporter AFA_03530 PF00535 Glycosyl transferase family 2 AFA_03540 PF00005 ABC transporter AFA_03540 PF12848 ABC transporter AFA_03545 PF00857 Isochorismatase family AFA_03550 PF05433 AFA_03550 AFA_03555 PF00355 Rieske [2Fe-2S] domain AFA_03555 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFA_03560 PF03776 Septum formation topological specificity factor MinE AFA_03565 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFA_03570 PF03775 Septum formation inhibitor MinC, C-terminal domain AFA_03570 PF05209 Septum formation inhibitor MinC, N-terminal domain AFA_03575 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFA_03575 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AFA_03580 PF01654 AFA_03580 AFA_03585 PF02322 AFA_03585 AFA_03590 PF00571 CBS domain AFA_03590 PF00654 Voltage gated chloride channel AFA_03600 PF00270 DEAD/DEAH box helicase AFA_03600 PF00271 Helicase conserved C-terminal domain AFA_03600 PF00570 HRDC domain AFA_03600 PF09382 RQC domain AFA_03600 PF16124 AFA_03600 AFA_03605 PF00317 Ribonucleotide reductase, all-alpha domain AFA_03605 PF02867 Ribonucleotide reductase, barrel domain AFA_03605 PF03477 ATP cone domain AFA_03610 PF00268 Ribonucleotide reductase, small chain AFA_03615 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_03620 PF00005 ABC transporter AFA_03620 PF12848 ABC transporter AFA_03620 PF16326 AFA_03620 AFA_03630 PF02381 MraZ protein AFA_03635 PF01795 MraW methylase family AFA_03640 PF04999 AFA_03640 AFA_03645 PF00905 Penicillin binding protein transpeptidase domain AFA_03645 PF03717 Penicillin-binding Protein dimerisation domain AFA_03650 PF01225 Mur ligase family, catalytic domain AFA_03650 PF02875 Mur ligase family, glutamate ligase domain AFA_03650 PF08245 Mur ligase middle domain AFA_03655 PF00953 Glycosyl transferase family 4 AFA_03655 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AFA_03660 PF02875 Mur ligase family, glutamate ligase domain AFA_03660 PF08245 Mur ligase middle domain AFA_03665 PF01098 AFA_03665 AFA_03670 PF03033 Glycosyltransferase family 28 N-terminal domain AFA_03670 PF04101 Glycosyltransferase family 28 C-terminal domain AFA_03675 PF01225 Mur ligase family, catalytic domain AFA_03675 PF02875 Mur ligase family, glutamate ligase domain AFA_03675 PF08245 Mur ligase middle domain AFA_03680 PF01820 D-ala D-ala ligase N-terminus AFA_03680 PF07478 D-ala D-ala ligase C-terminus AFA_03685 PF03799 Cell division protein FtsQ AFA_03685 PF08478 POTRA domain, FtsQ-type AFA_03690 PF02491 SHS2 domain inserted in FTSA AFA_03690 PF14450 Cell division protein FtsA AFA_03695 PF00091 Tubulin/FtsZ family, GTPase domain AFA_03695 PF12327 FtsZ family, C-terminal domain AFA_03700 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AFA_03705 PF05258 AFA_03705 AFA_03710 PF01551 Peptidase family M23 AFA_03715 PF01043 SecA preprotein cross-linking domain AFA_03715 PF02810 SEC-C motif AFA_03715 PF07516 SecA Wing and Scaffold domain AFA_03715 PF07517 SecA DEAD-like domain AFA_03720 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFA_03720 PF09130 Domain of unknown function (DUF1932) AFA_03725 PF00571 CBS domain AFA_03725 PF01769 Divalent cation transporter AFA_03725 PF03448 MgtE intracellular N domain AFA_03730 PF03061 Thioesterase superfamily AFA_03735 PF01546 Peptidase family M20/M25/M40 AFA_03735 PF07687 Peptidase dimerisation domain AFA_03740 PF00501 AMP-binding enzyme AFA_03740 PF13193 AMP-binding enzyme C-terminal domain AFA_03745 PF00459 Inositol monophosphatase family AFA_03750 PF01266 FAD dependent oxidoreductase AFA_03750 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AFA_03755 PF01055 Glycosyl hydrolases family 31 AFA_03765 PF00005 ABC transporter AFA_03765 PF09383 NIL domain AFA_03770 PF00528 Binding-protein-dependent transport system inner membrane component AFA_03775 PF03180 NLPA lipoprotein AFA_03780 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_03785 PF00528 Binding-protein-dependent transport system inner membrane component AFA_03790 PF00005 ABC transporter AFA_03800 PF00483 Nucleotidyl transferase AFA_03805 PF01636 Phosphotransferase enzyme family AFA_03810 PF04453 Organic solvent tolerance protein AFA_03815 PF00639 PPIC-type PPIASE domain AFA_03815 PF09312 SurA N-terminal domain AFA_03815 PF13616 PPIC-type PPIASE domain AFA_03820 PF00398 Ribosomal RNA adenine dimethylase AFA_03825 PF07670 Nucleoside recognition AFA_03830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFA_03835 PF01863 Protein of unknown function DUF45 AFA_03840 PF01553 Acyltransferase AFA_03845 PF13242 HAD-hyrolase-like AFA_03850 PF02092 AFA_03850 AFA_03850 PF05746 DALR anticodon binding domain AFA_03855 PF02091 Glycyl-tRNA synthetase alpha subunit AFA_03865 PF00378 Enoyl-CoA hydratase/isomerase family AFA_03870 PF05681 AFA_03870 AFA_03870 PF05683 Fumarase C-terminus AFA_03875 PF00440 Bacterial regulatory proteins, tetR family AFA_03880 PF07690 Major Facilitator Superfamily AFA_03885 PF07690 Major Facilitator Superfamily AFA_03895 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AFA_03900 PF01743 Poly A polymerase head domain AFA_03900 PF12626 Polymerase A arginine-rich C-terminus AFA_03900 PF12627 Probable RNA and SrmB- binding site of polymerase A AFA_03905 PF12710 haloacid dehalogenase-like hydrolase AFA_03910 PF00308 Bacterial dnaA protein AFA_03915 PF00586 AIR synthase related protein, N-terminal domain AFA_03915 PF02769 AIR synthase related protein, C-terminal domain AFA_03920 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AFA_03925 PF01715 IPP transferase AFA_03930 PF01119 DNA mismatch repair protein, C-terminal domain AFA_03930 PF08676 MutL C terminal dimerisation domain AFA_03930 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_03935 PF09335 AFA_03935 AFA_03940 PF02424 ApbE family AFA_03945 PF00175 Oxidoreductase NAD-binding domain AFA_03945 PF00258 Flavodoxin AFA_03945 PF00970 Oxidoreductase FAD-binding domain AFA_03945 PF03929 AFA_03945 AFA_03950 PF10029 AFA_03950 AFA_03955 PF13670 AFA_03955 AFA_03960 PF01520 N-acetylmuramoyl-L-alanine amidase AFA_03960 PF11741 AMIN domain AFA_03965 PF02367 Uncharacterised P-loop hydrolase UPF0079 AFA_03970 PF03547 AFA_03970 AFA_03975 PF03401 Tripartite tricarboxylate transporter family receptor AFA_03980 PF00390 Malic enzyme, N-terminal domain AFA_03980 PF01515 Phosphate acetyl/butaryl transferase AFA_03980 PF03949 Malic enzyme, NAD binding domain AFA_03985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_03985 PF03466 LysR substrate binding domain AFA_03990 PF00171 Aldehyde dehydrogenase family AFA_03995 PF00701 Dihydrodipicolinate synthetase family AFA_04000 PF00392 Bacterial regulatory proteins, gntR family AFA_04000 PF07729 FCD domain AFA_04005 PF06808 AFA_04005 AFA_04010 PF04290 AFA_04010 AFA_04015 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_04025 PF05232 AFA_04025 AFA_04030 PF01638 HxlR-like helix-turn-helix AFA_04035 PF13460 NADH(P)-binding AFA_04040 PF07366 SnoaL-like polyketide cyclase AFA_04045 PF07690 Major Facilitator Superfamily AFA_04050 PF04073 Aminoacyl-tRNA editing domain AFA_04055 PF00589 Phage integrase family AFA_04055 PF02899 Phage integrase, N-terminal SAM-like domain AFA_04060 PF13531 Bacterial extracellular solute-binding protein AFA_04065 PF00528 Binding-protein-dependent transport system inner membrane component AFA_04070 PF00005 ABC transporter AFA_04075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_04075 PF03459 TOBE domain AFA_04085 PF00580 UvrD/REP helicase N-terminal domain AFA_04085 PF12705 PD-(D/E)XK nuclease superfamily AFA_04085 PF13361 UvrD-like helicase C-terminal domain AFA_04095 PF12169 DNA polymerase III subunits gamma and tau domain III AFA_04095 PF12170 DNA polymerase III tau subunit V interacting with alpha AFA_04095 PF13177 DNA polymerase III, delta subunit AFA_04100 PF02575 YbaB/EbfC DNA-binding family AFA_04105 PF02132 RecR protein AFA_04105 PF13662 Toprim domain AFA_04110 PF13379 NMT1-like family AFA_04115 PF00005 ABC transporter AFA_04120 PF00528 Binding-protein-dependent transport system inner membrane component AFA_04125 PF00923 Transaldolase AFA_04130 PF00117 Glutamine amidotransferase class-I AFA_04130 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AFA_04135 PF02142 MGS-like domain AFA_04135 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFA_04135 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFA_04140 PF05118 Aspartyl/Asparaginyl beta-hydroxylase AFA_04145 PF00106 short chain dehydrogenase AFA_04150 PF00300 Histidine phosphatase superfamily (branch 1) AFA_04155 PF00860 Permease family AFA_04160 PF01272 Transcription elongation factor, GreA/GreB, C-term AFA_04160 PF03449 Transcription elongation factor, N-terminal AFA_04165 PF01985 CRS1 / YhbY (CRM) domain AFA_04170 PF01728 FtsJ-like methyltransferase AFA_04175 PF00004 ATPase family associated with various cellular activities (AAA) AFA_04175 PF01434 Peptidase family M41 AFA_04175 PF06480 FtsH Extracellular AFA_04180 PF00809 Pterin binding enzyme AFA_04185 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFA_04185 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFA_04185 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFA_04185 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFA_04190 PF13444 Acetyltransferase (GNAT) domain AFA_04195 PF02541 Ppx/GppA phosphatase family AFA_04200 PF02503 Polyphosphate kinase middle domain AFA_04200 PF13089 Polyphosphate kinase N-terminal domain AFA_04200 PF13090 Polyphosphate kinase C-terminal domain AFA_04205 PF12849 PBP superfamily domain AFA_04210 PF00528 Binding-protein-dependent transport system inner membrane component AFA_04215 PF00528 Binding-protein-dependent transport system inner membrane component AFA_04220 PF00005 ABC transporter AFA_04225 PF00501 AMP-binding enzyme AFA_04225 PF13193 AMP-binding enzyme C-terminal domain AFA_04235 PF03413 Peptidase propeptide and YPEB domain AFA_04240 PF00072 Response regulator receiver domain AFA_04240 PF00486 Transcriptional regulatory protein, C terminal AFA_04245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_04250 PF07681 AFA_04250 AFA_04255 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_04260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_04260 PF03466 LysR substrate binding domain AFA_04265 PF05232 AFA_04265 AFA_04280 PF00884 Sulfatase AFA_04285 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AFA_04285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFA_04290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_04290 PF03466 LysR substrate binding domain AFA_04295 PF02253 Phospholipase A1 AFA_04305 PF04341 AFA_04305 AFA_04310 PF00474 Sodium:solute symporter family AFA_04315 PF07848 PaaX-like protein AFA_04315 PF08223 PaaX-like protein C-terminal domain AFA_04320 PF13091 PLD-like domain AFA_04320 PF13396 AFA_04320 AFA_04335 PF01300 Telomere recombination AFA_04345 PF00701 Dihydrodipicolinate synthetase family AFA_04350 PF06804 NlpB/DapX lipoprotein AFA_04355 PF08281 Sigma-70, region 4 AFA_04360 PF16220 AFA_04360 AFA_04365 PF13500 AAA domain AFA_04370 PF00202 Aminotransferase class-III AFA_04375 PF00155 Aminotransferase class I and II AFA_04380 PF00067 Cytochrome P450 AFA_04385 PF03594 AFA_04385 AFA_04390 PF08007 Cupin superfamily protein AFA_04395 PF00488 MutS domain V AFA_04395 PF01624 MutS domain I AFA_04395 PF05188 MutS domain II AFA_04395 PF05190 MutS family domain IV AFA_04395 PF05192 MutS domain III AFA_04405 PF00593 TonB dependent receptor AFA_04405 PF07715 TonB-dependent Receptor Plug Domain AFA_04410 PF16576 AFA_04410 AFA_04415 PF00005 ABC transporter AFA_04415 PF02687 AFA_04415 AFA_04415 PF12704 MacB-like periplasmic core domain AFA_04420 PF02321 Outer membrane efflux protein AFA_04425 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AFA_04430 PF00005 ABC transporter AFA_04430 PF00664 ABC transporter transmembrane region AFA_04435 PF01019 Gamma-glutamyltranspeptidase AFA_04440 PF03401 Tripartite tricarboxylate transporter family receptor AFA_04445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_04445 PF03466 LysR substrate binding domain AFA_04450 PF00296 Luciferase-like monooxygenase AFA_04455 PF13649 Methyltransferase domain AFA_04460 PF00924 Mechanosensitive ion channel AFA_04465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_04465 PF03466 LysR substrate binding domain AFA_04470 PF00698 Acyl transferase domain AFA_04475 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AFA_04480 PF10620 AFA_04480 AFA_04485 PF06833 Malonate decarboxylase gamma subunit (MdcE) AFA_04490 PF01039 Carboxyl transferase domain AFA_04495 PF06857 AFA_04495 AFA_04500 PF16957 AFA_04500 AFA_04505 PF01425 Amidase AFA_04510 PF02667 AFA_04510 AFA_04515 PF01614 Bacterial transcriptional regulator AFA_04515 PF09339 IclR helix-turn-helix domain AFA_04520 PF00588 SpoU rRNA Methylase family AFA_04525 PF00459 Inositol monophosphatase family AFA_04530 PF00571 CBS domain AFA_04530 PF03471 Transporter associated domain AFA_04530 PF03741 AFA_04530 AFA_04535 PF02673 AFA_04535 AFA_04540 PF00149 Calcineurin-like phosphoesterase AFA_04545 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFA_04550 PF13181 Tetratricopeptide repeat AFA_04555 PF01406 tRNA synthetases class I (C) catalytic domain AFA_04555 PF09190 DALR domain AFA_04560 PF00730 HhH-GPD superfamily base excision DNA repair protein AFA_04565 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AFA_04570 PF01171 PP-loop family AFA_04570 PF09179 TilS substrate binding domain AFA_04575 PF00696 Amino acid kinase family AFA_04575 PF13840 ACT domain AFA_04590 PF01145 SPFH domain / Band 7 family AFA_04600 PF12833 Helix-turn-helix domain AFA_04600 PF14525 AFA_04600 AFA_04605 PF00795 Carbon-nitrogen hydrolase AFA_04615 PF00132 Bacterial transferase hexapeptide (six repeats) AFA_04625 PF13343 Bacterial extracellular solute-binding protein AFA_04630 PF00528 Binding-protein-dependent transport system inner membrane component AFA_04635 PF00005 ABC transporter AFA_04635 PF08402 TOBE domain AFA_04640 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AFA_04640 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AFA_04645 PF12769 Domain of unknown function (DUF3814) AFA_04650 PF02233 NAD(P) transhydrogenase beta subunit AFA_04675 PF01070 FMN-dependent dehydrogenase AFA_04680 PF13409 Glutathione S-transferase, N-terminal domain AFA_04680 PF13410 Glutathione S-transferase, C-terminal domain AFA_04685 PF03358 NADPH-dependent FMN reductase AFA_04690 PF03061 Thioesterase superfamily AFA_04695 PF11720 Peptidase inhibitor I78 family AFA_04700 PF02245 Methylpurine-DNA glycosylase (MPG) AFA_04705 PF00962 Adenosine/AMP deaminase AFA_04710 PF04241 AFA_04710 AFA_04715 PF01544 CorA-like Mg2+ transporter protein AFA_04720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_04720 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_04730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFA_04735 PF00528 Binding-protein-dependent transport system inner membrane component AFA_04740 PF00528 Binding-protein-dependent transport system inner membrane component AFA_04745 PF00005 ABC transporter AFA_04745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFA_04750 PF06676 AFA_04750 AFA_04755 PF00158 Sigma-54 interaction domain AFA_04755 PF01590 GAF domain AFA_04755 PF02954 Bacterial regulatory protein, Fis family AFA_04760 PF00171 Aldehyde dehydrogenase family AFA_04765 PF00465 Iron-containing alcohol dehydrogenase AFA_04770 PF01132 Elongation factor P (EF-P) OB domain AFA_04770 PF08207 Elongation factor P (EF-P) KOW-like domain AFA_04770 PF09285 Elongation factor P, C-terminal AFA_04775 PF10093 AFA_04775 AFA_04780 PF11062 AFA_04780 AFA_04785 PF06808 AFA_04785 AFA_04790 PF04290 AFA_04790 AFA_04795 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_04800 PF00330 Aconitase family (aconitate hydratase) AFA_04800 PF06434 Aconitate hydratase 2 N-terminus AFA_04800 PF11791 Aconitate B N-terminal domain AFA_04805 PF14542 GCN5-related N-acetyl-transferase AFA_04815 PF00285 Citrate synthase AFA_04820 PF13714 Phosphoenolpyruvate phosphomutase AFA_04825 PF00158 Sigma-54 interaction domain AFA_04825 PF00989 PAS fold AFA_04825 PF02954 Bacterial regulatory protein, Fis family AFA_04825 PF06506 Propionate catabolism activator AFA_04830 PF07690 Major Facilitator Superfamily AFA_04835 PF13560 Helix-turn-helix domain AFA_04840 PF00056 lactate/malate dehydrogenase, NAD binding domain AFA_04840 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AFA_04845 PF00392 Bacterial regulatory proteins, gntR family AFA_04845 PF07702 UTRA domain AFA_04850 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AFA_04855 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AFA_04860 PF00890 FAD binding domain AFA_04860 PF02910 Fumarate reductase flavoprotein C-term AFA_04865 PF13085 2Fe-2S iron-sulfur cluster binding domain AFA_04865 PF13534 4Fe-4S dicluster domain AFA_04870 PF03937 Flavinator of succinate dehydrogenase AFA_04875 PF00285 Citrate synthase AFA_04880 PF00392 Bacterial regulatory proteins, gntR family AFA_04880 PF07729 FCD domain AFA_04885 PF02652 AFA_04885 AFA_04890 PF00390 Malic enzyme, N-terminal domain AFA_04890 PF01515 Phosphate acetyl/butaryl transferase AFA_04890 PF03949 Malic enzyme, NAD binding domain AFA_04895 PF00676 Dehydrogenase E1 component AFA_04895 PF02779 Transketolase, pyrimidine binding domain AFA_04895 PF16078 AFA_04895 AFA_04895 PF16870 AFA_04895 AFA_04900 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFA_04900 PF00364 Biotin-requiring enzyme AFA_04900 PF02817 e3 binding domain AFA_04905 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFA_04905 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_04910 PF03969 AFG1-like ATPase AFA_04915 PF00579 tRNA synthetases class I (W and Y) AFA_04920 PF00132 Bacterial transferase hexapeptide (six repeats) AFA_04930 PF00575 S1 RNA binding domain AFA_04930 PF09371 Tex-like protein N-terminal domain AFA_04930 PF12836 Helix-hairpin-helix motif AFA_04930 PF16921 AFA_04930 AFA_04935 PF13307 Helicase C-terminal domain AFA_04940 PF00916 AFA_04940 AFA_04945 PF06249 Ethanolamine utilisation protein EutQ AFA_04950 PF01266 FAD dependent oxidoreductase AFA_04955 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_04960 PF04290 AFA_04960 AFA_04965 PF06808 AFA_04965 AFA_04970 PF00440 Bacterial regulatory proteins, tetR family AFA_04975 PF13525 Outer membrane lipoprotein AFA_04980 PF00849 RNA pseudouridylate synthase AFA_04980 PF01479 S4 domain AFA_04985 PF02578 Multi-copper polyphenol oxidoreductase laccase AFA_04990 PF07167 AFA_04990 AFA_04995 PF00106 short chain dehydrogenase AFA_05000 PF05233 AFA_05000 AFA_05000 PF07879 AFA_05000 AFA_05005 PF04339 AFA_05005 AFA_05020 PF10721 AFA_05020 AFA_05025 PF00959 Phage lysozyme AFA_05055 PF01464 Transglycosylase SLT domain AFA_05085 PF04079 Putative transcriptional regulators (Ypuh-like) AFA_05090 PF00849 RNA pseudouridylate synthase AFA_05090 PF01479 S4 domain AFA_05095 PF02576 Uncharacterised BCR, YhbC family COG0779 AFA_05095 PF17384 AFA_05095 AFA_05100 PF00575 S1 RNA binding domain AFA_05100 PF08529 NusA N-terminal domain AFA_05100 PF13184 NusA-like KH domain AFA_05100 PF14520 Helix-hairpin-helix domain AFA_05105 PF00009 Elongation factor Tu GTP binding domain AFA_05105 PF04760 Translation initiation factor IF-2, N-terminal region AFA_05105 PF08364 AFA_05105 AFA_05105 PF11987 Translation-initiation factor 2 AFA_05110 PF02033 Ribosome-binding factor A AFA_05115 PF01509 TruB family pseudouridylate synthase (N terminal domain) AFA_05115 PF16198 AFA_05115 AFA_05120 PF00009 Elongation factor Tu GTP binding domain AFA_05120 PF00679 Elongation factor G C-terminus AFA_05120 PF03144 Elongation factor Tu domain 2 AFA_05125 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_05130 PF07849 AFA_05130 AFA_05135 PF00528 Binding-protein-dependent transport system inner membrane component AFA_05140 PF00528 Binding-protein-dependent transport system inner membrane component AFA_05145 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_05150 PF03641 Possible lysine decarboxylase AFA_05155 PF00476 DNA polymerase family A AFA_05155 PF01367 5'-3' exonuclease, C-terminal SAM fold AFA_05155 PF01612 3'-5' exonuclease AFA_05155 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFA_05160 PF02690 AFA_05160 AFA_05165 PF01435 Peptidase family M48 AFA_05170 PF00892 EamA-like transporter family AFA_05175 PF00581 Rhodanese-like domain AFA_05180 PF02609 Exonuclease VII small subunit AFA_05185 PF00348 Polyprenyl synthetase AFA_05190 PF02779 Transketolase, pyrimidine binding domain AFA_05190 PF02780 Transketolase, C-terminal domain AFA_05190 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AFA_05195 PF02649 Type I GTP cyclohydrolase folE2 AFA_05200 PF01250 Ribosomal protein S6 AFA_05210 PF01084 Ribosomal protein S18 AFA_05215 PF01281 Ribosomal protein L9, N-terminal domain AFA_05215 PF03948 Ribosomal protein L9, C-terminal domain AFA_05220 PF00772 DnaB-like helicase N terminal domain AFA_05220 PF03796 DnaB-like helicase C terminal domain AFA_05225 PF13593 SBF-like CPA transporter family (DUF4137) AFA_05230 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AFA_05235 PF02562 PhoH-like protein AFA_05235 PF13638 PIN domain AFA_05240 PF00578 AhpC/TSA family AFA_05245 PF04430 Protein of unknown function (DUF498/DUF598) AFA_05250 PF00155 Aminotransferase class I and II AFA_05255 PF00742 Homoserine dehydrogenase AFA_05255 PF01842 ACT domain AFA_05255 PF03447 Homoserine dehydrogenase, NAD binding domain AFA_05260 PF00291 Pyridoxal-phosphate dependent enzyme AFA_05260 PF14821 Threonine synthase N terminus AFA_05270 PF13302 Acetyltransferase (GNAT) domain AFA_05275 PF01593 Flavin containing amine oxidoreductase AFA_05280 PF00494 Squalene/phytoene synthase AFA_05285 PF00494 Squalene/phytoene synthase AFA_05290 PF00842 Alanine racemase, C-terminal domain AFA_05290 PF01168 Alanine racemase, N-terminal domain AFA_05295 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_05300 PF05362 Lon protease (S16) C-terminal proteolytic domain AFA_05300 PF13481 AAA domain AFA_05305 PF01925 AFA_05305 AFA_05310 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family AFA_05315 PF13416 Bacterial extracellular solute-binding protein AFA_05320 PF00005 ABC transporter AFA_05320 PF08402 TOBE domain AFA_05325 PF00528 Binding-protein-dependent transport system inner membrane component AFA_05330 PF00528 Binding-protein-dependent transport system inner membrane component AFA_05335 PF03960 ArsC family AFA_05340 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AFA_05345 PF01895 PhoU domain AFA_05350 PF00563 EAL domain AFA_05355 PF04362 Bacterial Fe(2+) trafficking AFA_05360 PF00696 Amino acid kinase family AFA_05360 PF13508 Acetyltransferase (GNAT) domain AFA_05365 PF00270 DEAD/DEAH box helicase AFA_05365 PF00271 Helicase conserved C-terminal domain AFA_05365 PF04408 Helicase associated domain (HA2) AFA_05365 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AFA_05365 PF11898 AFA_05365 AFA_05370 PF01336 OB-fold nucleic acid binding domain AFA_05370 PF02811 PHP domain AFA_05370 PF07733 Bacterial DNA polymerase III alpha subunit AFA_05370 PF14579 Helix-hairpin-helix motif AFA_05375 PF00534 Glycosyl transferases group 1 AFA_05375 PF13439 Glycosyltransferase Family 4 AFA_05380 PF01522 Polysaccharide deacetylase AFA_05385 PF00535 Glycosyl transferase family 2 AFA_05390 PF01522 Polysaccharide deacetylase AFA_05395 PF00534 Glycosyl transferases group 1 AFA_05395 PF13439 Glycosyltransferase Family 4 AFA_05400 PF00534 Glycosyl transferases group 1 AFA_05400 PF13439 Glycosyltransferase Family 4 AFA_05405 PF03692 AFA_05405 AFA_05410 PF02698 DUF218 domain AFA_05415 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AFA_05420 PF00005 ABC transporter AFA_05420 PF00664 ABC transporter transmembrane region AFA_05430 PF13671 AAA domain AFA_05435 PF10150 Ribonuclease E/G family AFA_05440 PF04886 AFA_05440 AFA_05470 PF01266 FAD dependent oxidoreductase AFA_05480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_05480 PF03466 LysR substrate binding domain AFA_05485 PF01593 Flavin containing amine oxidoreductase AFA_05490 PF00392 Bacterial regulatory proteins, gntR family AFA_05490 PF07729 FCD domain AFA_05495 PF01565 FAD binding domain AFA_05495 PF02913 FAD linked oxidases, C-terminal domain AFA_05500 PF01565 FAD binding domain AFA_05505 PF02754 AFA_05505 AFA_05505 PF13183 4Fe-4S dicluster domain AFA_05510 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFA_05515 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFA_05520 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit AFA_05525 PF04909 Amidohydrolase AFA_05530 PF03737 Demethylmenaquinone methyltransferase AFA_05535 PF04909 Amidohydrolase AFA_05540 PF07690 Major Facilitator Superfamily AFA_05545 PF04303 PrpF protein AFA_05550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_05550 PF03466 LysR substrate binding domain AFA_05555 PF07690 Major Facilitator Superfamily AFA_05560 PF00171 Aldehyde dehydrogenase family AFA_05565 PF01565 FAD binding domain AFA_05565 PF02913 FAD linked oxidases, C-terminal domain AFA_05575 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_05580 PF01494 FAD binding domain AFA_05595 PF06674 AFA_05595 AFA_05605 PF01124 MAPEG family AFA_05610 PF01594 AFA_05610 AFA_05615 PF02690 AFA_05615 AFA_05630 PF13609 Gram-negative porin AFA_05640 PF00892 EamA-like transporter family AFA_05645 PF01734 Patatin-like phospholipase AFA_05645 PF12536 AFA_05645 AFA_05650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_05650 PF03466 LysR substrate binding domain AFA_05655 PF03601 AFA_05655 AFA_05660 PF04247 AFA_05660 AFA_05665 PF00753 Metallo-beta-lactamase superfamily AFA_05670 PF01022 Bacterial regulatory protein, arsR family AFA_05675 PF04143 AFA_05675 AFA_05680 PF04143 AFA_05680 AFA_05685 PF13411 MerR HTH family regulatory protein AFA_05690 PF00122 E1-E2 ATPase AFA_05690 PF00702 haloacid dehalogenase-like hydrolase AFA_05695 PF00916 AFA_05695 AFA_05695 PF01740 STAS domain AFA_05700 PF03781 Sulfatase-modifying factor enzyme 1 AFA_05705 PF00884 Sulfatase AFA_05710 PF05154 AFA_05710 AFA_05715 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFA_05715 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFA_05720 PF01266 FAD dependent oxidoreductase AFA_05720 PF16901 AFA_05720 AFA_05725 PF00877 NlpC/P60 family AFA_05730 PF05247 Flagellar transcriptional activator (FlhD) AFA_05735 PF05280 Flagellar transcriptional activator (FlhC) AFA_05740 PF01618 AFA_05740 AFA_05745 PF00691 OmpA family AFA_05745 PF13677 AFA_05745 AFA_05750 PF01584 CheW-like domain AFA_05750 PF01627 Hpt domain AFA_05750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_05750 PF02895 Signal transducing histidine kinase, homodimeric domain AFA_05750 PF09078 CheY binding AFA_05755 PF01584 CheW-like domain AFA_05760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFA_05760 PF00672 HAMP domain AFA_05760 PF02203 Tar ligand binding domain homologue AFA_05765 PF01739 CheR methyltransferase, SAM binding domain AFA_05765 PF03705 CheR methyltransferase, all-alpha domain AFA_05770 PF00072 Response regulator receiver domain AFA_05770 PF01339 CheB methylesterase AFA_05775 PF00072 Response regulator receiver domain AFA_05780 PF04344 Chemotaxis phosphatase, CheZ AFA_05785 PF01312 FlhB HrpN YscU SpaS Family AFA_05790 PF00771 FHIPEP family AFA_05795 PF00448 SRP54-type protein, GTPase domain AFA_05800 PF07804 HipA-like C-terminal domain AFA_05800 PF13657 HipA N-terminal domain AFA_05805 PF01381 Helix-turn-helix AFA_05810 PF05130 FlgN protein AFA_05815 PF04316 Anti-sigma-28 factor, FlgM AFA_05820 PF13144 SAF-like AFA_05825 PF00460 Flagella basal body rod protein AFA_05830 PF00460 Flagella basal body rod protein AFA_05830 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFA_05835 PF03963 AFA_05835 AFA_05835 PF13860 FlgD Ig-like domain AFA_05835 PF13861 FlgD Tudor-like domain AFA_05840 PF00460 Flagella basal body rod protein AFA_05840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFA_05840 PF07559 Flagellar basal body protein FlaE AFA_05845 PF00460 Flagella basal body rod protein AFA_05845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFA_05850 PF00460 Flagella basal body rod protein AFA_05850 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFA_05855 PF02107 AFA_05855 AFA_05860 PF02119 AFA_05860 AFA_05865 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AFA_05865 PF10135 AFA_05865 AFA_05870 PF00460 Flagella basal body rod protein AFA_05870 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFA_05875 PF00669 Bacterial flagellin N-terminal helical region AFA_05880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFA_05880 PF00672 HAMP domain AFA_05890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFA_05890 PF02203 Tar ligand binding domain homologue AFA_05895 PF00027 Cyclic nucleotide-binding domain AFA_05895 PF00571 CBS domain AFA_05895 PF03445 AFA_05895 AFA_05895 PF10335 AFA_05895 AFA_05900 PF00929 Exonuclease AFA_05905 PF01311 AFA_05905 AFA_05910 PF01313 AFA_05910 AFA_05915 PF00813 AFA_05915 AFA_05920 PF04347 AFA_05920 AFA_05925 PF01052 Surface presentation of antigens (SPOA) AFA_05930 PF01052 Surface presentation of antigens (SPOA) AFA_05930 PF02154 Flagellar motor switch protein FliM AFA_05935 PF03748 AFA_05935 AFA_05940 PF02120 Flagellar hook-length control protein FliK AFA_05945 PF02050 Flagellar FliJ protein AFA_05950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFA_05955 PF02108 AFA_05955 AFA_05960 PF01706 FliG C-terminal domain AFA_05960 PF14841 FliG middle domain AFA_05960 PF14842 FliG N-terminal domain AFA_05965 PF01514 Secretory protein of YscJ/FliF family AFA_05965 PF08345 AFA_05965 AFA_05970 PF02049 AFA_05970 AFA_05975 PF01312 FlhB HrpN YscU SpaS Family AFA_05980 PF02120 Flagellar hook-length control protein FliK AFA_05985 PF05400 Flagellar protein FliT AFA_05990 PF02561 Flagellar protein FliS AFA_05995 PF02465 AFA_05995 AFA_05995 PF07195 AFA_05995 AFA_06000 PF03646 FlaG protein AFA_06005 PF04539 Sigma-70 region 3 AFA_06005 PF04542 Sigma-70 region 2 AFA_06005 PF04545 Sigma-70, region 4 AFA_06010 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AFA_06015 PF00669 Bacterial flagellin N-terminal helical region AFA_06015 PF00700 Bacterial flagellin C-terminal helical region AFA_06015 PF08884 Flagellin D3 domain AFA_06020 PF05787 Bacterial protein of unknown function (DUF839) AFA_06030 PF07520 AFA_06030 AFA_06035 PF10139 AFA_06035 AFA_06045 PF00092 von Willebrand factor type A domain AFA_06050 PF00005 ABC transporter AFA_06055 PF02687 AFA_06055 AFA_06060 PF03781 Sulfatase-modifying factor enzyme 1 AFA_06075 PF13519 von Willebrand factor type A domain AFA_06080 PF04286 AFA_06080 AFA_06085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFA_06085 PF08447 PAS fold AFA_06090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFA_06090 PF08447 PAS fold AFA_06100 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFA_06100 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFA_06105 PF03401 Tripartite tricarboxylate transporter family receptor AFA_06115 PF02447 AFA_06115 AFA_06125 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_06130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_06130 PF03466 LysR substrate binding domain AFA_06135 PF03831 PhnA protein AFA_06135 PF08274 PhnA Zinc-Ribbon AFA_06140 PF04542 Sigma-70 region 2 AFA_06140 PF08281 Sigma-70, region 4 AFA_06145 PF04773 FecR protein AFA_06145 PF16220 AFA_06145 AFA_06150 PF07715 TonB-dependent Receptor Plug Domain AFA_06155 PF03150 Di-haem cytochrome c peroxidase AFA_06160 PF00465 Iron-containing alcohol dehydrogenase AFA_06165 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_06170 PF06808 AFA_06170 AFA_06175 PF04290 AFA_06175 AFA_06180 PF00924 Mechanosensitive ion channel AFA_06185 PF00324 Amino acid permease AFA_06190 PF00230 Major intrinsic protein AFA_06195 PF11804 AFA_06195 AFA_06200 PF12365 AFA_06200 AFA_06205 PF03929 AFA_06205 AFA_06215 PF07158 AFA_06215 AFA_06220 PF00857 Isochorismatase family AFA_06225 PF04143 AFA_06225 AFA_06230 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_06230 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding AFA_06240 PF08770 Sulphur oxidation protein SoxZ AFA_06245 PF13501 Sulfur oxidation protein SoxY AFA_06250 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_06255 PF00313 'Cold-shock' DNA-binding domain AFA_06275 PF13245 Part of AAA domain AFA_06275 PF13538 UvrD-like helicase C-terminal domain AFA_06280 PF00069 Protein kinase domain AFA_06300 PF01170 Putative RNA methylase family UPF0020 AFA_06305 PF00145 C-5 cytosine-specific DNA methylase AFA_06310 PF09665 AFA_06310 AFA_06315 PF01381 Helix-turn-helix AFA_06325 PF10074 AFA_06325 AFA_06345 PF04335 VirB8 protein AFA_06350 PF03524 Conjugal transfer protein AFA_06355 PF03743 Bacterial conjugation TrbI-like protein AFA_06360 PF10038 AFA_06360 AFA_06375 PF00512 His Kinase A (phospho-acceptor) domain AFA_06375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_06375 PF08521 AFA_06375 AFA_06380 PF00072 Response regulator receiver domain AFA_06380 PF00486 Transcriptional regulatory protein, C terminal AFA_06385 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFA_06390 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO AFA_06395 PF00034 Cytochrome c AFA_06400 PF00034 Cytochrome c AFA_06405 PF00149 Calcineurin-like phosphoesterase AFA_06410 PF00593 TonB dependent receptor AFA_06410 PF07660 Secretin and TonB N terminus short domain AFA_06410 PF07715 TonB-dependent Receptor Plug Domain AFA_06415 PF04773 FecR protein AFA_06415 PF16220 AFA_06415 AFA_06415 PF16344 AFA_06415 AFA_06420 PF04542 Sigma-70 region 2 AFA_06420 PF08281 Sigma-70, region 4 AFA_06425 PF00266 Aminotransferase class-V AFA_06430 PF02321 Outer membrane efflux protein AFA_06435 PF01914 AFA_06435 AFA_06440 PF01979 Amidohydrolase family AFA_06445 PF17090 AFA_06445 AFA_06450 PF13437 HlyD family secretion protein AFA_06450 PF13533 Biotin-lipoyl like AFA_06455 PF04632 AFA_06455 AFA_06460 PF00860 Permease family AFA_06465 PF12710 haloacid dehalogenase-like hydrolase AFA_06470 PF03729 AFA_06470 AFA_06475 PF04314 Protein of unknown function (DUF461) AFA_06480 PF02630 SCO1/SenC AFA_06490 PF01645 Conserved region in glutamate synthase AFA_06495 PF04632 AFA_06495 AFA_06500 PF01047 MarR family AFA_06505 PF02464 Competence-damaged protein AFA_06510 PF00330 Aconitase family (aconitate hydratase) AFA_06510 PF00694 Aconitase C-terminal domain AFA_06515 PF00392 Bacterial regulatory proteins, gntR family AFA_06515 PF07729 FCD domain AFA_06520 PF04303 PrpF protein AFA_06525 PF12833 Helix-turn-helix domain AFA_06525 PF14525 AFA_06525 AFA_06530 PF13458 Periplasmic binding protein AFA_06535 PF00355 Rieske [2Fe-2S] domain AFA_06535 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFA_06540 PF00866 Ring hydroxylating beta subunit AFA_06545 PF00857 Isochorismatase family AFA_06550 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_06555 PF01593 Flavin containing amine oxidoreductase AFA_06560 PF00171 Aldehyde dehydrogenase family AFA_06565 PF00106 short chain dehydrogenase AFA_06570 PF00501 AMP-binding enzyme AFA_06575 PF02627 Carboxymuconolactone decarboxylase family AFA_06585 PF00924 Mechanosensitive ion channel AFA_06585 PF12607 AFA_06585 AFA_06590 PF00924 Mechanosensitive ion channel AFA_06595 PF00083 Sugar (and other) transporter AFA_06600 PF00266 Aminotransferase class-V AFA_06610 PF01381 Helix-turn-helix AFA_06610 PF07883 Cupin domain AFA_06615 PF00072 Response regulator receiver domain AFA_06615 PF01966 HD domain AFA_06620 PF00072 Response regulator receiver domain AFA_06620 PF00512 His Kinase A (phospho-acceptor) domain AFA_06620 PF00989 PAS fold AFA_06620 PF01627 Hpt domain AFA_06620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_06620 PF03707 AFA_06620 AFA_06625 PF00571 CBS domain AFA_06625 PF01769 Divalent cation transporter AFA_06625 PF03448 MgtE intracellular N domain AFA_06635 PF06965 Na+/H+ antiporter 1 AFA_06640 PF02580 D-Tyr-tRNA(Tyr) deacylase AFA_06645 PF00893 Small Multidrug Resistance protein AFA_06650 PF09335 AFA_06650 AFA_06655 PF00583 Acetyltransferase (GNAT) family AFA_06665 PF01435 Peptidase family M48 AFA_06670 PF08332 Calcium/calmodulin dependent protein kinase II Association AFA_06695 PF01555 DNA methylase AFA_06705 PF04381 Putative exonuclease, RdgC AFA_06720 PF09588 YqaJ-like viral recombinase domain AFA_06725 PF04404 AFA_06725 AFA_06780 PF14213 AFA_06780 AFA_06815 PF05772 NinB protein AFA_06820 PF16786 AFA_06820 AFA_06835 PF06356 AFA_06835 AFA_06860 PF10045 AFA_06860 AFA_06865 PF17289 AFA_06865 AFA_06875 PF06381 AFA_06875 AFA_06880 PF04233 AFA_06880 AFA_06905 PF07799 AFA_06905 AFA_06930 PF02368 Bacterial Ig-like domain (group 2) AFA_06975 PF13472 GDSL-like Lipase/Acylhydrolase family AFA_06985 PF00959 Phage lysozyme AFA_06990 PF10721 AFA_06990 AFA_07005 PF02586 Uncharacterised ACR, COG2135 AFA_07015 PF00589 Phage integrase family AFA_07040 PF00717 Peptidase S24-like AFA_07060 PF06356 AFA_07060 AFA_07075 PF13554 Bacteriophage related domain of unknown function AFA_07090 PF09718 AFA_07090 AFA_07095 PF05939 AFA_07095 AFA_07100 PF05100 AFA_07100 AFA_07105 PF00877 NlpC/P60 family AFA_07105 PF14464 Prokaryotic homologs of the JAB domain AFA_07110 PF06805 AFA_07110 AFA_07115 PF09327 AFA_07115 AFA_07115 PF13550 AFA_07115 AFA_07155 PF00959 Phage lysozyme AFA_07160 PF10721 AFA_07160 AFA_07180 PF04342 AFA_07180 AFA_07185 PF03724 META domain AFA_07185 PF14302 AFA_07185 AFA_07190 PF04391 AFA_07190 AFA_07195 PF13458 Periplasmic binding protein AFA_07200 PF13031 AFA_07200 AFA_07205 PF12843 AFA_07205 AFA_07210 PF00990 GGDEF domain AFA_07220 PF03473 MOSC domain AFA_07220 PF03476 MOSC N-terminal beta barrel domain AFA_07225 PF01037 AsnC family AFA_07225 PF13412 Winged helix-turn-helix DNA-binding AFA_07230 PF01053 Cys/Met metabolism PLP-dependent enzyme AFA_07240 PF00293 NUDIX domain AFA_07245 PF04304 AFA_07245 AFA_07250 PF02627 Carboxymuconolactone decarboxylase family AFA_07255 PF00764 Arginosuccinate synthase AFA_07260 PF00149 Calcineurin-like phosphoesterase AFA_07265 PF00005 ABC transporter AFA_07265 PF08402 TOBE domain AFA_07270 PF00528 Binding-protein-dependent transport system inner membrane component AFA_07275 PF00528 Binding-protein-dependent transport system inner membrane component AFA_07280 PF13343 Bacterial extracellular solute-binding protein AFA_07285 PF00356 Bacterial regulatory proteins, lacI family AFA_07285 PF13377 Periplasmic binding protein-like domain AFA_07290 PF00117 Glutamine amidotransferase class-I AFA_07295 PF09604 AFA_07295 AFA_07300 PF03814 AFA_07300 AFA_07305 PF02669 AFA_07305 AFA_07310 PF00122 E1-E2 ATPase AFA_07310 PF00702 haloacid dehalogenase-like hydrolase AFA_07315 PF00512 His Kinase A (phospho-acceptor) domain AFA_07315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_07315 PF02702 Osmosensitive K+ channel His kinase sensor domain AFA_07315 PF13493 Domain of unknown function (DUF4118) AFA_07320 PF00072 Response regulator receiver domain AFA_07320 PF00486 Transcriptional regulatory protein, C terminal AFA_07325 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFA_07325 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFA_07330 PF12112 Protein of unknown function (DUF3579) AFA_07335 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFA_07335 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFA_07340 PF01649 Ribosomal protein S20 AFA_07345 PF03023 AFA_07345 AFA_07350 PF00106 short chain dehydrogenase AFA_07355 PF00406 Adenylate kinase AFA_07355 PF05191 Adenylate kinase, active site lid AFA_07360 PF02348 Cytidylyltransferase AFA_07365 PF03966 Trm112p-like protein AFA_07370 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AFA_07375 PF02472 Biopolymer transport protein ExbD/TolR AFA_07380 PF01618 AFA_07380 AFA_07385 PF02601 AFA_07385 AFA_07385 PF13742 AFA_07385 AFA_07390 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AFA_07390 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AFA_07395 PF00210 Ferritin-like domain AFA_07400 PF00108 Thiolase, N-terminal domain AFA_07400 PF02803 Thiolase, C-terminal domain AFA_07405 PF02643 Uncharacterized ACR, COG1430 AFA_07410 PF00313 'Cold-shock' DNA-binding domain AFA_07415 PF02617 ATP-dependent Clp protease adaptor protein ClpS AFA_07420 PF00004 ATPase family associated with various cellular activities (AAA) AFA_07420 PF02861 Clp amino terminal domain AFA_07420 PF07724 AAA domain (Cdc48 subfamily) AFA_07420 PF10431 C-terminal, D2-small domain, of ClpB protein AFA_07425 PF04403 AFA_07425 AFA_07430 PF02470 AFA_07430 AFA_07435 PF03886 Protein of unknown function (DUF330) AFA_07440 PF00171 Aldehyde dehydrogenase family AFA_07440 PF01619 Proline dehydrogenase AFA_07440 PF14850 DNA-binding domain of Proline dehydrogenase AFA_07445 PF13458 Periplasmic binding protein AFA_07450 PF02653 AFA_07450 AFA_07455 PF02653 AFA_07455 AFA_07460 PF00005 ABC transporter AFA_07460 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_07465 PF00005 ABC transporter AFA_07465 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_07480 PF01988 AFA_07480 AFA_07485 PF01965 DJ-1/PfpI family AFA_07490 PF04471 Restriction endonuclease AFA_07495 PF05971 Protein of unknown function (DUF890) AFA_07500 PF00692 dUTPase AFA_07505 PF02441 Flavoprotein AFA_07505 PF04127 DNA / pantothenate metabolism flavoprotein AFA_07510 PF01252 AFA_07510 AFA_07515 PF00133 tRNA synthetases class I (I, L, M and V) AFA_07515 PF06827 Zinc finger found in FPG and IleRS AFA_07515 PF08264 Anticodon-binding domain of tRNA AFA_07520 PF01687 Riboflavin kinase AFA_07520 PF06574 FAD synthetase AFA_07525 PF00551 Formyl transferase AFA_07530 PF01189 NOL1/NOP2/sun family AFA_07535 PF00487 AFA_07535 AFA_07540 PF00580 UvrD/REP helicase N-terminal domain AFA_07540 PF13361 UvrD-like helicase C-terminal domain AFA_07545 PF00174 Oxidoreductase molybdopterin binding domain AFA_07545 PF03404 Mo-co oxidoreductase dimerisation domain AFA_07550 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_07555 PF09423 PhoD-like phosphatase AFA_07565 PF00005 ABC transporter AFA_07565 PF12848 ABC transporter AFA_07570 PF05175 Methyltransferase small domain AFA_07575 PF01546 Peptidase family M20/M25/M40 AFA_07575 PF07687 Peptidase dimerisation domain AFA_07580 PF00132 Bacterial transferase hexapeptide (six repeats) AFA_07580 PF14602 Hexapeptide repeat of succinyl-transferase AFA_07580 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AFA_07590 PF02311 AraC-like ligand binding domain AFA_07590 PF12833 Helix-turn-helix domain AFA_07595 PF01925 AFA_07595 AFA_07600 PF02080 TrkA-C domain AFA_07600 PF03600 Citrate transporter AFA_07605 PF03061 Thioesterase superfamily AFA_07615 PF06476 AFA_07615 AFA_07620 PF01223 DNA/RNA non-specific endonuclease AFA_07635 PF01758 Sodium Bile acid symporter family AFA_07640 PF02293 AmiS/UreI family transporter AFA_07645 PF13411 MerR HTH family regulatory protein AFA_07650 PF07690 Major Facilitator Superfamily AFA_07665 PF02515 CoA-transferase family III AFA_07670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFA_07670 PF05697 Bacterial trigger factor protein (TF) AFA_07670 PF05698 Bacterial trigger factor protein (TF) C-terminus AFA_07675 PF00574 Clp protease AFA_07680 PF06689 ClpX C4-type zinc finger AFA_07680 PF07724 AAA domain (Cdc48 subfamily) AFA_07680 PF10431 C-terminal, D2-small domain, of ClpB protein AFA_07685 PF00004 ATPase family associated with various cellular activities (AAA) AFA_07685 PF02190 ATP-dependent protease La (LON) domain AFA_07685 PF05362 Lon protease (S16) C-terminal proteolytic domain AFA_07690 PF00717 Peptidase S24-like AFA_07690 PF01726 LexA DNA binding domain AFA_07695 PF13302 Acetyltransferase (GNAT) domain AFA_07700 PF00155 Aminotransferase class I and II AFA_07705 PF00271 Helicase conserved C-terminal domain AFA_07705 PF02151 UvrB/uvrC motif AFA_07705 PF04851 Type III restriction enzyme, res subunit AFA_07705 PF12344 Ultra-violet resistance protein B AFA_07710 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFA_07715 PF02082 Transcriptional regulator AFA_07720 PF00266 Aminotransferase class-V AFA_07725 PF01592 NifU-like N terminal domain AFA_07730 PF01521 Iron-sulphur cluster biosynthesis AFA_07740 PF03401 Tripartite tricarboxylate transporter family receptor AFA_07745 PF00152 tRNA synthetases class II (D, K and N) AFA_07745 PF01336 OB-fold nucleic acid binding domain AFA_07750 PF00106 short chain dehydrogenase AFA_07760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFA_07765 PF01176 Translation initiation factor 1A / IF-1 AFA_07770 PF00892 EamA-like transporter family AFA_07775 PF01758 Sodium Bile acid symporter family AFA_07780 PF00892 EamA-like transporter family AFA_07785 PF01368 DHH family AFA_07785 PF02272 DHHA1 domain AFA_07795 PF02687 AFA_07795 AFA_07795 PF12704 MacB-like periplasmic core domain AFA_07800 PF00005 ABC transporter AFA_07805 PF01026 TatD related DNase AFA_07810 PF00753 Metallo-beta-lactamase superfamily AFA_07810 PF03772 AFA_07810 AFA_07810 PF13567 AFA_07810 AFA_07815 PF12697 Alpha/beta hydrolase family AFA_07820 PF02811 PHP domain AFA_07825 PF01272 Transcription elongation factor, GreA/GreB, C-term AFA_07825 PF03449 Transcription elongation factor, N-terminal AFA_07830 PF02769 AIR synthase related protein, C-terminal domain AFA_07830 PF13507 CobB/CobQ-like glutamine amidotransferase domain AFA_07835 PF00478 IMP dehydrogenase / GMP reductase domain AFA_07835 PF00571 CBS domain AFA_07840 PF12697 Alpha/beta hydrolase family AFA_07845 PF00117 Glutamine amidotransferase class-I AFA_07845 PF00958 GMP synthase C terminal domain AFA_07845 PF02540 NAD synthase AFA_07850 PF00589 Phage integrase family AFA_07850 PF13356 Domain of unknown function (DUF4102) AFA_07855 PF05930 Prophage CP4-57 regulatory protein (AlpA) AFA_07860 PF13481 AAA domain AFA_07865 PF06504 AFA_07865 AFA_07885 PF04610 AFA_07885 AFA_07895 PF12703 AFA_07895 AFA_07905 PF01758 Sodium Bile acid symporter family AFA_07910 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFA_07915 PF03358 NADPH-dependent FMN reductase AFA_07920 PF12840 Helix-turn-helix domain AFA_07925 PF00239 Resolvase, N terminal domain AFA_07925 PF02796 Helix-turn-helix domain of resolvase AFA_07935 PF04986 AFA_07935 AFA_07935 PF14319 AFA_07935 AFA_07945 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFA_07950 PF00809 Pterin binding enzyme AFA_07960 PF03403 Platelet-activating factor acetylhydrolase, isoform II AFA_07965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_07965 PF03466 LysR substrate binding domain AFA_07970 PF01717 Cobalamin-independent synthase, Catalytic domain AFA_07970 PF08267 Cobalamin-independent synthase, N-terminal domain AFA_07980 PF08908 AFA_07980 AFA_07985 PF01717 Cobalamin-independent synthase, Catalytic domain AFA_07990 PF00440 Bacterial regulatory proteins, tetR family AFA_07995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_07995 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_08000 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFA_08005 PF08279 HTH domain AFA_08005 PF13280 AFA_08005 AFA_08010 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFA_08010 PF07683 Cobalamin synthesis protein cobW C-terminal domain AFA_08015 PF02649 Type I GTP cyclohydrolase folE2 AFA_08020 PF01809 AFA_08020 AFA_08025 PF02657 Fe-S metabolism associated domain AFA_08030 PF01979 Amidohydrolase family AFA_08035 PF01475 Ferric uptake regulator family AFA_08040 PF01502 Phosphoribosyl-AMP cyclohydrolase AFA_08045 PF08543 Phosphomethylpyrimidine kinase AFA_08050 PF00293 NUDIX domain AFA_08055 PF14552 Tautomerase enzyme AFA_08065 PF01292 Prokaryotic cytochrome b561 AFA_08070 PF03060 Nitronate monooxygenase AFA_08080 PF02311 AraC-like ligand binding domain AFA_08080 PF12833 Helix-turn-helix domain AFA_08095 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFA_08100 PF00043 Glutathione S-transferase, C-terminal domain AFA_08100 PF02798 Glutathione S-transferase, N-terminal domain AFA_08105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_08105 PF03466 LysR substrate binding domain AFA_08110 PF04234 CopC domain AFA_08110 PF05425 AFA_08110 AFA_08115 PF07987 Domain of unkown function (DUF1775) AFA_08125 PF02798 Glutathione S-transferase, N-terminal domain AFA_08130 PF00574 Clp protease AFA_08135 PF04575 AFA_08135 AFA_08145 PF00593 TonB dependent receptor AFA_08145 PF07715 TonB-dependent Receptor Plug Domain AFA_08150 PF12833 Helix-turn-helix domain AFA_08155 PF00891 O-methyltransferase AFA_08160 PF07690 Major Facilitator Superfamily AFA_08165 PF00581 Rhodanese-like domain AFA_08165 PF00899 ThiF family AFA_08170 PF14464 Prokaryotic homologs of the JAB domain AFA_08175 PF02597 ThiS family AFA_08180 PF02515 CoA-transferase family III AFA_08185 PF00501 AMP-binding enzyme AFA_08185 PF13193 AMP-binding enzyme C-terminal domain AFA_08190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_08190 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_08190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_08195 PF07690 Major Facilitator Superfamily AFA_08205 PF02635 DsrE/DsrF-like family AFA_08210 PF02627 Carboxymuconolactone decarboxylase family AFA_08215 PF01022 Bacterial regulatory protein, arsR family AFA_08220 PF11127 Protein of unknown function (DUF2892) AFA_08230 PF02311 AraC-like ligand binding domain AFA_08230 PF12833 Helix-turn-helix domain AFA_08235 PF00682 HMGL-like AFA_08235 PF08502 LeuA allosteric (dimerisation) domain AFA_08240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_08240 PF03466 LysR substrate binding domain AFA_08245 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFA_08245 PF13378 Enolase C-terminal domain-like AFA_08250 PF00775 Dioxygenase AFA_08250 PF04444 Catechol dioxygenase N terminus AFA_08255 PF01144 Coenzyme A transferase AFA_08260 PF01144 Coenzyme A transferase AFA_08265 PF00561 alpha/beta hydrolase fold AFA_08270 PF02426 Muconolactone delta-isomerase AFA_08275 PF03594 AFA_08275 AFA_08280 PF01926 50S ribosome-binding GTPase AFA_08285 PF01926 50S ribosome-binding GTPase AFA_08290 PF02535 AFA_08290 AFA_08300 PF00005 ABC transporter AFA_08305 PF00850 Histone deacetylase domain AFA_08310 PF00196 Bacterial regulatory proteins, luxR family AFA_08315 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AFA_08315 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AFA_08335 PF02585 GlcNAc-PI de-N-acetylase AFA_08340 PF05940 AFA_08340 AFA_08345 PF01047 MarR family AFA_08350 PF01494 FAD binding domain AFA_08355 PF07690 Major Facilitator Superfamily AFA_08365 PF01168 Alanine racemase, N-terminal domain AFA_08370 PF00155 Aminotransferase class I and II AFA_08370 PF00392 Bacterial regulatory proteins, gntR family AFA_08375 PF00892 EamA-like transporter family AFA_08380 PF12802 MarR family AFA_08385 PF08774 VRR-NUC domain AFA_08390 PF06733 DEAD_2 AFA_08390 PF13307 Helicase C-terminal domain AFA_08395 PF01266 FAD dependent oxidoreductase AFA_08400 PF00890 FAD binding domain AFA_08405 PF02445 Quinolinate synthetase A protein AFA_08410 PF00248 Aldo/keto reductase family AFA_08415 PF03692 AFA_08415 AFA_08425 PF03006 AFA_08425 AFA_08430 PF07411 Domain of unknown function (DUF1508) AFA_08435 PF01037 AsnC family AFA_08435 PF09339 IclR helix-turn-helix domain AFA_08435 PF13404 AsnC-type helix-turn-helix domain AFA_08440 PF07690 Major Facilitator Superfamily AFA_08445 PF01425 Amidase AFA_08455 PF01042 Endoribonuclease L-PSP AFA_08460 PF04828 Glutathione-dependent formaldehyde-activating enzyme AFA_08465 PF08212 Lipocalin-like domain AFA_08470 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_08475 PF00528 Binding-protein-dependent transport system inner membrane component AFA_08480 PF00528 Binding-protein-dependent transport system inner membrane component AFA_08485 PF00005 ABC transporter AFA_08510 PF00158 Sigma-54 interaction domain AFA_08510 PF02830 V4R domain AFA_08510 PF02954 Bacterial regulatory protein, Fis family AFA_08510 PF06505 AFA_08510 AFA_08515 PF06099 AFA_08515 AFA_08520 PF02332 Methane/Phenol/Toluene Hydroxylase AFA_08525 PF02406 MmoB/DmpM family AFA_08530 PF02332 Methane/Phenol/Toluene Hydroxylase AFA_08530 PF04945 YHS domain AFA_08535 PF04663 Phenol hydroxylase conserved region AFA_08540 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_08540 PF00175 Oxidoreductase NAD-binding domain AFA_08540 PF00970 Oxidoreductase FAD-binding domain AFA_08545 PF00355 Rieske [2Fe-2S] domain AFA_08545 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFA_08550 PF03061 Thioesterase superfamily AFA_08555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_08555 PF03466 LysR substrate binding domain AFA_08560 PF00355 Rieske [2Fe-2S] domain AFA_08560 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFA_08565 PF00866 Ring hydroxylating beta subunit AFA_08570 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_08570 PF00175 Oxidoreductase NAD-binding domain AFA_08570 PF00970 Oxidoreductase FAD-binding domain AFA_08575 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_08580 PF07690 Major Facilitator Superfamily AFA_08590 PF01810 AFA_08590 AFA_08595 PF08308 AFA_08595 AFA_08600 PF00356 Bacterial regulatory proteins, lacI family AFA_08600 PF13377 Periplasmic binding protein-like domain AFA_08605 PF01925 AFA_08605 AFA_08610 PF01979 Amidohydrolase family AFA_08615 PF00860 Permease family AFA_08630 PF01145 SPFH domain / Band 7 family AFA_08635 PF01957 NfeD-like C-terminal, partner-binding AFA_08640 PF13649 Methyltransferase domain AFA_08645 PF14903 AFA_08645 AFA_08650 PF03891 AFA_08650 AFA_08660 PF00294 pfkB family carbohydrate kinase AFA_08665 PF03891 AFA_08665 AFA_08670 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFA_08670 PF02824 TGS domain AFA_08670 PF03129 Anticodon binding domain AFA_08670 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFA_08675 PF00707 Translation initiation factor IF-3, C-terminal domain AFA_08675 PF05198 Translation initiation factor IF-3, N-terminal domain AFA_08680 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AFA_08680 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AFA_08685 PF03610 PTS system fructose IIA component AFA_08690 PF00381 PTS HPr component phosphorylation site AFA_08695 PF00391 PEP-utilising enzyme, mobile domain AFA_08695 PF02896 PEP-utilising enzyme, TIM barrel domain AFA_08695 PF05524 PEP-utilising enzyme, N-terminal AFA_08705 PF04380 AFA_08705 AFA_08710 PF07690 Major Facilitator Superfamily AFA_08715 PF13599 Pentapeptide repeats (9 copies) AFA_08720 PF01078 Magnesium chelatase, subunit ChlI AFA_08720 PF13335 AFA_08720 AFA_08720 PF13541 Subunit ChlI of Mg-chelatase AFA_08725 PF01632 Ribosomal protein L35 AFA_08730 PF00453 Ribosomal protein L20 AFA_08735 PF01409 tRNA synthetases class II core domain (F) AFA_08735 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AFA_08740 PF01588 Putative tRNA binding domain AFA_08740 PF03147 Ferredoxin-fold anticodon binding domain AFA_08740 PF03483 B3/4 domain AFA_08740 PF03484 tRNA synthetase B5 domain AFA_08745 PF00216 Bacterial DNA-binding protein AFA_08750 PF13411 MerR HTH family regulatory protein AFA_08755 PF04305 AFA_08755 AFA_08760 PF04542 Sigma-70 region 2 AFA_08760 PF10099 AFA_08760 AFA_08765 PF00005 ABC transporter AFA_08765 PF00664 ABC transporter transmembrane region AFA_08770 PF02082 Transcriptional regulator AFA_08775 PF01458 Uncharacterized protein family (UPF0051) AFA_08780 PF00005 ABC transporter AFA_08785 PF01458 Uncharacterized protein family (UPF0051) AFA_08790 PF00266 Aminotransferase class-V AFA_08795 PF01592 NifU-like N terminal domain AFA_08800 PF01883 Domain of unknown function DUF59 AFA_08805 PF00196 Bacterial regulatory proteins, luxR family AFA_08815 PF03783 Curli production assembly/transport component CsgG AFA_08820 PF10614 AFA_08820 AFA_08825 PF10627 AFA_08825 AFA_08830 PF13994 AFA_08830 AFA_08835 PF00535 Glycosyl transferase family 2 AFA_08840 PF01522 Polysaccharide deacetylase AFA_08840 PF14883 Hypothetical glycosyl hydrolase family 13 AFA_08860 PF00313 'Cold-shock' DNA-binding domain AFA_08865 PF04972 BON domain AFA_08875 PF07661 AFA_08875 AFA_08895 PF01380 SIS domain AFA_08895 PF01418 Helix-turn-helix domain, rpiR family AFA_08900 PF00291 Pyridoxal-phosphate dependent enzyme AFA_08905 PF01546 Peptidase family M20/M25/M40 AFA_08905 PF07687 Peptidase dimerisation domain AFA_08910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFA_08915 PF00528 Binding-protein-dependent transport system inner membrane component AFA_08920 PF00528 Binding-protein-dependent transport system inner membrane component AFA_08920 PF12911 AFA_08920 AFA_08925 PF00005 ABC transporter AFA_08925 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFA_08930 PF00795 Carbon-nitrogen hydrolase AFA_08935 PF01546 Peptidase family M20/M25/M40 AFA_08935 PF07687 Peptidase dimerisation domain AFA_08940 PF07171 MlrC C-terminus AFA_08940 PF07364 Protein of unknown function (DUF1485) AFA_08960 PF08857 Putative ParB-like nuclease AFA_08975 PF00593 TonB dependent receptor AFA_08975 PF07715 TonB-dependent Receptor Plug Domain AFA_08985 PF00107 Zinc-binding dehydrogenase AFA_08985 PF08240 Alcohol dehydrogenase GroES-like domain AFA_08990 PF12833 Helix-turn-helix domain AFA_08990 PF12852 Cupin AFA_08995 PF01266 FAD dependent oxidoreductase AFA_09005 PF07883 Cupin domain AFA_09005 PF12844 Helix-turn-helix domain AFA_09010 PF03781 Sulfatase-modifying factor enzyme 1 AFA_09025 PF02386 Cation transport protein AFA_09030 PF02080 TrkA-C domain AFA_09030 PF02254 TrkA-N domain AFA_09035 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFA_09040 PF03061 Thioesterase superfamily AFA_09045 PF09424 Yqey-like protein AFA_09050 PF02811 PHP domain AFA_09050 PF07733 Bacterial DNA polymerase III alpha subunit AFA_09050 PF14579 Helix-hairpin-helix motif AFA_09065 PF03942 AFA_09065 AFA_09075 PF05742 AFA_09075 AFA_09080 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AFA_09085 PF03401 Tripartite tricarboxylate transporter family receptor AFA_09090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_09090 PF03466 LysR substrate binding domain AFA_09095 PF00768 D-alanyl-D-alanine carboxypeptidase AFA_09100 PF06366 AFA_09100 AFA_09105 PF01618 AFA_09105 AFA_09110 PF00691 OmpA family AFA_09110 PF13677 AFA_09110 AFA_09115 PF00474 Sodium:solute symporter family AFA_09120 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_09125 PF00296 Luciferase-like monooxygenase AFA_09130 PF00106 short chain dehydrogenase AFA_09135 PF00677 Lumazine binding domain AFA_09140 PF13521 AAA domain AFA_09145 PF00206 Lyase AFA_09145 PF10415 Fumarase C C-terminus AFA_09150 PF00375 Sodium:dicarboxylate symporter family AFA_09155 PF00512 His Kinase A (phospho-acceptor) domain AFA_09155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_09160 PF00072 Response regulator receiver domain AFA_09160 PF00158 Sigma-54 interaction domain AFA_09160 PF02954 Bacterial regulatory protein, Fis family AFA_09165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_09165 PF03466 LysR substrate binding domain AFA_09170 PF00890 FAD binding domain AFA_09180 PF03401 Tripartite tricarboxylate transporter family receptor AFA_09185 PF00384 Molybdopterin oxidoreductase AFA_09185 PF01568 Molydopterin dinucleotide binding domain AFA_09190 PF03916 AFA_09190 AFA_09195 PF13247 4Fe-4S dicluster domain AFA_09200 PF00593 TonB dependent receptor AFA_09200 PF07715 TonB-dependent Receptor Plug Domain AFA_09205 PF09723 AFA_09205 AFA_09210 PF03069 Acetamidase/Formamidase family AFA_09215 PF01979 Amidohydrolase family AFA_09220 PF00860 Permease family AFA_09225 PF00011 Hsp20/alpha crystallin family AFA_09230 PF01546 Peptidase family M20/M25/M40 AFA_09230 PF07687 Peptidase dimerisation domain AFA_09235 PF02311 AraC-like ligand binding domain AFA_09235 PF12833 Helix-turn-helix domain AFA_09240 PF07690 Major Facilitator Superfamily AFA_09245 PF07690 Major Facilitator Superfamily AFA_09250 PF07859 alpha/beta hydrolase fold AFA_09255 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFA_09260 PF01494 FAD binding domain AFA_09265 PF01047 MarR family AFA_09270 PF00293 NUDIX domain AFA_09270 PF09297 NADH pyrophosphatase zinc ribbon domain AFA_09275 PF03755 AFA_09275 AFA_09275 PF08340 AFA_09275 AFA_09280 PF00149 Calcineurin-like phosphoesterase AFA_09285 PF13514 AAA domain AFA_09290 PF01138 3' exoribonuclease family, domain 1 AFA_09290 PF03725 3' exoribonuclease family, domain 2 AFA_09295 PF01725 Ham1 family AFA_09300 PF04055 Radical SAM superfamily AFA_09300 PF06969 HemN C-terminal domain AFA_09305 PF00120 Glutamine synthetase, catalytic domain AFA_09305 PF03951 Glutamine synthetase, beta-Grasp domain AFA_09310 PF13673 Acetyltransferase (GNAT) domain AFA_09315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_09315 PF03466 LysR substrate binding domain AFA_09320 PF07690 Major Facilitator Superfamily AFA_09325 PF00462 Glutaredoxin AFA_09325 PF07291 AFA_09325 AFA_09330 PF00005 ABC transporter AFA_09335 PF00528 Binding-protein-dependent transport system inner membrane component AFA_09340 PF13343 Bacterial extracellular solute-binding protein AFA_09345 PF00175 Oxidoreductase NAD-binding domain AFA_09345 PF00970 Oxidoreductase FAD-binding domain AFA_09350 PF01042 Endoribonuclease L-PSP AFA_09355 PF00270 DEAD/DEAH box helicase AFA_09355 PF00271 Helicase conserved C-terminal domain AFA_09355 PF17191 AFA_09355 AFA_09360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_09360 PF03466 LysR substrate binding domain AFA_09365 PF00210 Ferritin-like domain AFA_09370 PF13458 Periplasmic binding protein AFA_09375 PF00005 ABC transporter AFA_09375 PF08402 TOBE domain AFA_09380 PF00528 Binding-protein-dependent transport system inner membrane component AFA_09385 PF00528 Binding-protein-dependent transport system inner membrane component AFA_09390 PF13416 Bacterial extracellular solute-binding protein AFA_09395 PF03807 NADP oxidoreductase coenzyme F420-dependent AFA_09395 PF14748 Pyrroline-5-carboxylate reductase dimerisation AFA_09400 PF13458 Periplasmic binding protein AFA_09405 PF02653 AFA_09405 AFA_09410 PF02653 AFA_09410 AFA_09410 PF11862 AFA_09410 AFA_09415 PF00005 ABC transporter AFA_09415 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_09420 PF00005 ABC transporter AFA_09430 PF02798 Glutathione S-transferase, N-terminal domain AFA_09430 PF14497 Glutathione S-transferase, C-terminal domain AFA_09435 PF00326 Prolyl oligopeptidase family AFA_09440 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFA_09440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFA_09445 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_09450 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFA_09450 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFA_09455 PF00206 Lyase AFA_09455 PF10415 Fumarase C C-terminus AFA_09460 PF07995 Glucose / Sorbosone dehydrogenase AFA_09465 PF08241 Methyltransferase domain AFA_09470 PF00582 Universal stress protein family AFA_09475 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_09480 PF07690 Major Facilitator Superfamily AFA_09485 PF12796 Ankyrin repeats (3 copies) AFA_09490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_09490 PF03466 LysR substrate binding domain AFA_09495 PF13663 AFA_09495 AFA_09500 PF00122 E1-E2 ATPase AFA_09500 PF00403 Heavy-metal-associated domain AFA_09500 PF00702 haloacid dehalogenase-like hydrolase AFA_09505 PF11071 AFA_09505 AFA_09510 PF00589 Phage integrase family AFA_09515 PF11740 AFA_09515 AFA_09520 PF07731 Multicopper oxidase AFA_09520 PF07732 Multicopper oxidase AFA_09525 PF02222 ATP-grasp domain AFA_09535 PF03976 Polyphosphate kinase 2 (PPK2) AFA_09540 PF07514 Putative helicase AFA_09540 PF07515 Protein of unknown function (DUF1528) AFA_09560 PF01464 Transglycosylase SLT domain AFA_09565 PF11072 AFA_09565 AFA_09570 PF12696 TraM recognition site of TraD and TraG AFA_09575 PF14348 AFA_09575 AFA_09580 PF09686 AFA_09580 AFA_09585 PF11660 AFA_09585 AFA_09590 PF11190 AFA_09590 AFA_09595 PF11990 AFA_09595 AFA_09600 PF11444 AFA_09600 AFA_09605 PF11920 AFA_09605 AFA_09620 PF11130 AFA_09620 AFA_09625 PF07511 AFA_09625 AFA_09630 PF06834 AFA_09630 AFA_09645 PF07916 AFA_09645 AFA_09660 PF00589 Phage integrase family AFA_09670 PF00069 Protein kinase domain AFA_09680 PF02452 PemK-like protein AFA_09685 PF11455 AFA_09685 AFA_09695 PF10263 AFA_09695 AFA_09700 PF03703 AFA_09700 AFA_09705 PF10411 Disulfide bond isomerase protein N-terminus AFA_09705 PF13098 Thioredoxin-like domain AFA_09720 PF00816 H-NS histone family AFA_09725 PF12705 PD-(D/E)XK nuclease superfamily AFA_09730 PF00580 UvrD/REP helicase N-terminal domain AFA_09730 PF13361 UvrD-like helicase C-terminal domain AFA_09745 PF00271 Helicase conserved C-terminal domain AFA_09750 PF00271 Helicase conserved C-terminal domain AFA_09765 PF04002 RadC-like JAB domain AFA_09795 PF11679 AFA_09795 AFA_09800 PF12101 AFA_09800 AFA_09805 PF01527 Transposase AFA_09815 PF13683 AFA_09815 AFA_09820 PF00350 Dynamin family AFA_09820 PF01381 Helix-turn-helix AFA_09830 PF00270 DEAD/DEAH box helicase AFA_09830 PF00271 Helicase conserved C-terminal domain AFA_09845 PF00436 Single-strand binding protein family AFA_09855 PF08900 AFA_09855 AFA_09875 PF11198 AFA_09875 AFA_09885 PF13614 AAA domain AFA_09890 PF00691 OmpA family AFA_09890 PF16234 AFA_09890 AFA_09900 PF03704 Bacterial transcriptional activator domain AFA_09900 PF13191 AAA ATPase domain AFA_09905 PF05036 Sporulation related domain AFA_09905 PF14331 AFA_09905 AFA_09910 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) AFA_09915 PF05936 AFA_09915 AFA_09920 PF12790 Type VI secretion lipoprotein AFA_09925 PF13665 AFA_09925 AFA_09930 PF12059 AFA_09930 AFA_09935 PF00805 Pentapeptide repeats (8 copies) AFA_09935 PF13599 Pentapeptide repeats (9 copies) AFA_09940 PF00805 Pentapeptide repeats (8 copies) AFA_09940 PF09937 AFA_09940 AFA_09940 PF13599 Pentapeptide repeats (9 copies) AFA_09945 PF05954 Phage late control gene D protein (GPD) AFA_09950 PF00004 ATPase family associated with various cellular activities (AAA) AFA_09950 PF02861 Clp amino terminal domain AFA_09950 PF07724 AAA domain (Cdc48 subfamily) AFA_09950 PF10431 C-terminal, D2-small domain, of ClpB protein AFA_09955 PF06996 AFA_09955 AFA_09960 PF05947 AFA_09960 AFA_09965 PF04965 Gene 25-like lysozyme AFA_09970 PF05638 Protein of unknown function (DUF796) AFA_09975 PF05943 AFA_09975 AFA_09980 PF05591 AFA_09980 AFA_09985 PF06812 AFA_09985 AFA_09985 PF16989 AFA_09985 AFA_09990 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_09995 PF04463 AFA_09995 AFA_10005 PF06355 Aegerolysin AFA_10010 PF00583 Acetyltransferase (GNAT) family AFA_10015 PF00589 Phage integrase family AFA_10020 PF07653 Variant SH3 domain AFA_10030 PF01292 Prokaryotic cytochrome b561 AFA_10035 PF04264 YceI-like domain AFA_10040 PF04264 YceI-like domain AFA_10045 PF03960 ArsC family AFA_10050 PF00043 Glutathione S-transferase, C-terminal domain AFA_10050 PF02798 Glutathione S-transferase, N-terminal domain AFA_10055 PF11738 Protein of unknown function (DUF3298) AFA_10060 PF03358 NADPH-dependent FMN reductase AFA_10060 PF10982 Protein of unknown function (DUF2789) AFA_10065 PF12796 Ankyrin repeats (3 copies) AFA_10070 PF01026 TatD related DNase AFA_10075 PF13177 DNA polymerase III, delta subunit AFA_10085 PF02618 YceG-like family AFA_10090 PF01571 Aminomethyltransferase folate-binding domain AFA_10095 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFA_10095 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFA_10100 PF16113 AFA_10100 AFA_10105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_10105 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_10105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_10110 PF01424 R3H domain AFA_10110 PF03658 RnfH family Ubiquitin AFA_10115 PF03364 Polyketide cyclase / dehydrase and lipid transport AFA_10120 PF01668 SmpB protein AFA_10125 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_10135 PF00391 PEP-utilising enzyme, mobile domain AFA_10135 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFA_10135 PF02896 PEP-utilising enzyme, TIM barrel domain AFA_10140 PF03618 AFA_10140 AFA_10145 PF01425 Amidase AFA_10150 PF00588 SpoU rRNA Methylase family AFA_10155 PF01351 Ribonuclease HII AFA_10160 PF02684 AFA_10160 AFA_10165 PF00132 Bacterial transferase hexapeptide (six repeats) AFA_10165 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AFA_10170 PF07977 FabA-like domain AFA_10175 PF00132 Bacterial transferase hexapeptide (six repeats) AFA_10175 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AFA_10175 PF14602 Hexapeptide repeat of succinyl-transferase AFA_10180 PF03938 Outer membrane protein (OmpH-like) AFA_10185 PF01103 Surface antigen AFA_10185 PF07244 Surface antigen variable number repeat AFA_10190 PF02163 Peptidase family M50 AFA_10190 PF13180 PDZ domain AFA_10195 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AFA_10195 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AFA_10195 PF13288 DXP reductoisomerase C-terminal domain AFA_10200 PF01148 Cytidylyltransferase family AFA_10205 PF01255 Putative undecaprenyl diphosphate synthase AFA_10210 PF01765 Ribosome recycling factor AFA_10215 PF00696 Amino acid kinase family AFA_10220 PF00889 Elongation factor TS AFA_10225 PF00318 Ribosomal protein S2 AFA_10230 PF00557 Metallopeptidase family M24 AFA_10235 PF01909 Nucleotidyltransferase domain AFA_10235 PF01966 HD domain AFA_10235 PF08335 GlnD PII-uridylyltransferase AFA_10240 PF01914 AFA_10240 AFA_10245 PF02600 Disulfide bond formation protein DsbB AFA_10250 PF08020 Protein of unknown function (DUF1706) AFA_10255 PF00156 Phosphoribosyl transferase domain AFA_10255 PF13522 Glutamine amidotransferase domain AFA_10260 PF02674 AFA_10260 AFA_10265 PF05036 Sporulation related domain AFA_10270 PF02875 Mur ligase family, glutamate ligase domain AFA_10270 PF08245 Mur ligase middle domain AFA_10275 PF00364 Biotin-requiring enzyme AFA_10275 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFA_10275 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_10280 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFA_10280 PF00364 Biotin-requiring enzyme AFA_10280 PF02817 e3 binding domain AFA_10285 PF00456 Transketolase, thiamine diphosphate binding domain AFA_10290 PF00512 His Kinase A (phospho-acceptor) domain AFA_10290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_10290 PF08448 PAS fold AFA_10290 PF13188 PAS domain AFA_10295 PF00072 Response regulator receiver domain AFA_10295 PF00196 Bacterial regulatory proteins, luxR family AFA_10300 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AFA_10300 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AFA_10305 PF01432 Peptidase family M3 AFA_10310 PF02630 SCO1/SenC AFA_10315 PF00009 Elongation factor Tu GTP binding domain AFA_10315 PF00679 Elongation factor G C-terminus AFA_10315 PF03144 Elongation factor Tu domain 2 AFA_10315 PF03764 Elongation factor G, domain IV AFA_10315 PF14492 Elongation Factor G, domain II AFA_10320 PF13472 GDSL-like Lipase/Acylhydrolase family AFA_10325 PF12840 Helix-turn-helix domain AFA_10330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFA_10330 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_10335 PF13411 MerR HTH family regulatory protein AFA_10340 PF06808 AFA_10340 AFA_10345 PF04290 AFA_10345 AFA_10350 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_10355 PF01220 Dehydroquinase class II AFA_10360 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_10365 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_10370 PF12697 Alpha/beta hydrolase family AFA_10375 PF02515 CoA-transferase family III AFA_10380 PF01614 Bacterial transcriptional regulator AFA_10380 PF09339 IclR helix-turn-helix domain AFA_10385 PF00108 Thiolase, N-terminal domain AFA_10385 PF02803 Thiolase, C-terminal domain AFA_10390 PF01796 AFA_10390 AFA_10395 PF00561 alpha/beta hydrolase fold AFA_10400 PF00881 Nitroreductase family AFA_10405 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AFA_10410 PF02321 Outer membrane efflux protein AFA_10415 PF00873 AcrB/AcrD/AcrF family AFA_10420 PF16576 AFA_10420 AFA_10425 PF00005 ABC transporter AFA_10430 PF02653 AFA_10430 AFA_10435 PF04392 ABC transporter substrate binding protein AFA_10445 PF00108 Thiolase, N-terminal domain AFA_10445 PF02803 Thiolase, C-terminal domain AFA_10450 PF00108 Thiolase, N-terminal domain AFA_10450 PF02803 Thiolase, C-terminal domain AFA_10455 PF00582 Universal stress protein family AFA_10460 PF13714 Phosphoenolpyruvate phosphomutase AFA_10465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_10465 PF03466 LysR substrate binding domain AFA_10470 PF01276 Orn/Lys/Arg decarboxylase, major domain AFA_10470 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AFA_10470 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AFA_10480 PF03372 Endonuclease/Exonuclease/phosphatase family AFA_10490 PF00625 Guanylate kinase AFA_10495 PF01192 RNA polymerase Rpb6 AFA_10500 PF02824 TGS domain AFA_10500 PF04607 Region found in RelA / SpoT proteins AFA_10500 PF13291 ACT domain AFA_10500 PF13328 HD domain AFA_10505 PF05437 AFA_10505 AFA_10510 PF03591 AFA_10510 AFA_10515 PF01551 Peptidase family M23 AFA_10520 PF00639 PPIC-type PPIASE domain AFA_10520 PF13624 SurA N-terminal domain AFA_10525 PF03009 Glycerophosphoryl diester phosphodiesterase family AFA_10530 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ AFA_10535 PF00849 RNA pseudouridylate synthase AFA_10535 PF01479 S4 domain AFA_10540 PF04345 Chorismate lyase AFA_10545 PF07690 Major Facilitator Superfamily AFA_10550 PF00248 Aldo/keto reductase family AFA_10555 PF00543 Nitrogen regulatory protein P-II AFA_10560 PF00924 Mechanosensitive ion channel AFA_10565 PF00206 Lyase AFA_10565 PF14698 Argininosuccinate lyase C-terminal AFA_10570 PF13166 AFA_10570 AFA_10575 PF01804 Penicillin amidase AFA_10580 PF01266 FAD dependent oxidoreductase AFA_10585 PF00440 Bacterial regulatory proteins, tetR family AFA_10585 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFA_10590 PF05958 tRNA (Uracil-5-)-methyltransferase AFA_10595 PF01476 LysM domain AFA_10595 PF01551 Peptidase family M23 AFA_10600 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AFA_10605 PF01975 Survival protein SurE AFA_10610 PF02660 AFA_10610 AFA_10615 PF00814 Glycoprotease family AFA_10620 PF00860 Permease family AFA_10625 PF00085 Thioredoxin AFA_10630 PF09630 Domain of unknown function (DUF2024) AFA_10635 PF08534 Redoxin AFA_10640 PF01205 Uncharacterized protein family UPF0029 AFA_10640 PF09186 Domain of unknown function (DUF1949) AFA_10645 PF00005 ABC transporter AFA_10645 PF12848 ABC transporter AFA_10650 PF02016 LD-carboxypeptidase AFA_10655 PF14437 AFA_10655 AFA_10660 PF00005 ABC transporter AFA_10665 PF01061 AFA_10665 AFA_10670 PF08269 Cache domain AFA_10675 PF06808 AFA_10675 AFA_10680 PF04290 AFA_10680 AFA_10685 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_10690 PF01266 FAD dependent oxidoreductase AFA_10695 PF12680 SnoaL-like domain AFA_10700 PF05690 Thiazole biosynthesis protein ThiG AFA_10705 PF00205 Thiamine pyrophosphate enzyme, central domain AFA_10705 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFA_10705 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFA_10710 PF07728 AAA domain (dynein-related subfamily) AFA_10710 PF12556 AFA_10710 AFA_10715 PF06213 AFA_10715 AFA_10715 PF11775 AFA_10715 AFA_10720 PF01614 Bacterial transcriptional regulator AFA_10720 PF09339 IclR helix-turn-helix domain AFA_10725 PF01515 Phosphate acetyl/butaryl transferase AFA_10730 PF01925 AFA_10730 AFA_10735 PF00583 Acetyltransferase (GNAT) family AFA_10740 PF04461 Protein of unknown function (DUF520) AFA_10745 PF00501 AMP-binding enzyme AFA_10745 PF13193 AMP-binding enzyme C-terminal domain AFA_10750 PF02537 AFA_10750 AFA_10755 PF00117 Glutamine amidotransferase class-I AFA_10760 PF02311 AraC-like ligand binding domain AFA_10760 PF12833 Helix-turn-helix domain AFA_10765 PF13593 SBF-like CPA transporter family (DUF4137) AFA_10775 PF00578 AhpC/TSA family AFA_10775 PF01790 AFA_10775 AFA_10780 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AFA_10785 PF06808 AFA_10785 AFA_10790 PF04290 AFA_10790 AFA_10795 PF01416 tRNA pseudouridine synthase AFA_10800 PF01476 LysM domain AFA_10805 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFA_10805 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFA_10810 PF00180 Isocitrate/isopropylmalate dehydrogenase AFA_10815 PF00694 Aconitase C-terminal domain AFA_10820 PF00330 Aconitase family (aconitate hydratase) AFA_10825 PF02627 Carboxymuconolactone decarboxylase family AFA_10830 PF03928 Domain of unknown function (DUF336) AFA_10835 PF00072 Response regulator receiver domain AFA_10835 PF00196 Bacterial regulatory proteins, luxR family AFA_10840 PF00512 His Kinase A (phospho-acceptor) domain AFA_10840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_10845 PF01435 Peptidase family M48 AFA_10850 PF01264 Chorismate synthase AFA_10855 PF02696 AFA_10855 AFA_10860 PF09842 AFA_10860 AFA_10865 PF03631 AFA_10865 AFA_10870 PF00571 CBS domain AFA_10875 PF01207 Dihydrouridine synthase (Dus) AFA_10880 PF01636 Phosphotransferase enzyme family AFA_10895 PF00482 Type II secretion system (T2SS), protein F AFA_10900 PF00482 Type II secretion system (T2SS), protein F AFA_10905 PF00437 Type II/IV secretion system protein AFA_10905 PF00498 FHA domain AFA_10910 PF00263 AFA_10910 AFA_10910 PF13629 AFA_10910 AFA_10915 PF08666 SAF domain AFA_10915 PF16976 AFA_10915 AFA_10940 PF00593 TonB dependent receptor AFA_10940 PF07715 TonB-dependent Receptor Plug Domain AFA_10945 PF04773 FecR protein AFA_10945 PF16220 AFA_10945 AFA_10945 PF16344 AFA_10945 AFA_10950 PF04542 Sigma-70 region 2 AFA_10950 PF08281 Sigma-70, region 4 AFA_10955 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFA_10960 PF00719 Inorganic pyrophosphatase AFA_10965 PF07219 AFA_10965 AFA_10965 PF13181 Tetratricopeptide repeat AFA_10970 PF04375 AFA_10970 AFA_10975 PF02602 Uroporphyrinogen-III synthase HemD AFA_10980 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AFA_10980 PF03900 Porphobilinogen deaminase, C-terminal domain AFA_10985 PF03741 AFA_10985 AFA_10990 PF00549 CoA-ligase AFA_10990 PF02629 CoA binding domain AFA_10995 PF00549 CoA-ligase AFA_10995 PF08442 ATP-grasp domain AFA_11000 PF11136 AFA_11000 AFA_11005 PF01717 Cobalamin-independent synthase, Catalytic domain AFA_11005 PF08267 Cobalamin-independent synthase, N-terminal domain AFA_11010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_11010 PF03466 LysR substrate binding domain AFA_11015 PF02631 RecX family AFA_11025 PF00072 Response regulator receiver domain AFA_11025 PF00486 Transcriptional regulatory protein, C terminal AFA_11030 PF00512 His Kinase A (phospho-acceptor) domain AFA_11030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_11030 PF08521 AFA_11030 AFA_11035 PF00083 Sugar (and other) transporter AFA_11040 PF04381 Putative exonuclease, RdgC AFA_11045 PF12625 AFA_11045 AFA_11045 PF12833 Helix-turn-helix domain AFA_11050 PF00501 AMP-binding enzyme AFA_11050 PF13193 AMP-binding enzyme C-terminal domain AFA_11055 PF00378 Enoyl-CoA hydratase/isomerase family AFA_11060 PF04341 AFA_11060 AFA_11065 PF00474 Sodium:solute symporter family AFA_11070 PF00171 Aldehyde dehydrogenase family AFA_11075 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFA_11075 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFA_11090 PF00905 Penicillin binding protein transpeptidase domain AFA_11090 PF00912 Transglycosylase AFA_11090 PF06832 AFA_11090 AFA_11095 PF00207 Alpha-2-macroglobulin family AFA_11095 PF01835 MG2 domain AFA_11095 PF07703 Alpha-2-macroglobulin family N-terminal region AFA_11095 PF11974 Alpha-2-macroglobulin MG1 domain AFA_11105 PF03060 Nitronate monooxygenase AFA_11110 PF04055 Radical SAM superfamily AFA_11110 PF06969 HemN C-terminal domain AFA_11115 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFA_11115 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFA_11115 PF04039 AFA_11115 AFA_11115 PF13244 AFA_11115 AFA_11120 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFA_11125 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFA_11130 PF01899 AFA_11130 AFA_11135 PF04066 AFA_11135 AFA_11140 PF03334 AFA_11140 AFA_11150 PF02705 AFA_11150 AFA_11155 PF00512 His Kinase A (phospho-acceptor) domain AFA_11155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_11160 PF00072 Response regulator receiver domain AFA_11160 PF00486 Transcriptional regulatory protein, C terminal AFA_11165 PF02472 Biopolymer transport protein ExbD/TolR AFA_11170 PF01618 AFA_11170 AFA_11175 PF03544 Gram-negative bacterial TonB protein C-terminal AFA_11175 PF16031 AFA_11175 AFA_11180 PF00005 ABC transporter AFA_11180 PF12857 AFA_11180 AFA_11185 PF00528 Binding-protein-dependent transport system inner membrane component AFA_11190 PF00528 Binding-protein-dependent transport system inner membrane component AFA_11195 PF13531 Bacterial extracellular solute-binding protein AFA_11200 PF13649 Methyltransferase domain AFA_11210 PF00313 'Cold-shock' DNA-binding domain AFA_11230 PF00216 Bacterial DNA-binding protein AFA_11235 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFA_11240 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_11245 PF02239 Cytochrome D1 heme domain AFA_11255 PF13404 AsnC-type helix-turn-helix domain AFA_11265 PF04055 Radical SAM superfamily AFA_11265 PF13186 Iron-sulfur cluster-binding domain AFA_11265 PF13353 4Fe-4S single cluster domain AFA_11275 PF10414 Sirohaem synthase dimerisation region AFA_11275 PF13241 Putative NAD(P)-binding AFA_11275 PF14824 Sirohaem biosynthesis protein central AFA_11280 PF00034 Cytochrome c AFA_11285 PF02239 Cytochrome D1 heme domain AFA_11285 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_11290 PF00392 Bacterial regulatory proteins, gntR family AFA_11295 PF01053 Cys/Met metabolism PLP-dependent enzyme AFA_11300 PF00588 SpoU rRNA Methylase family AFA_11300 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFA_11305 PF00575 S1 RNA binding domain AFA_11305 PF00773 RNB domain AFA_11305 PF08206 Ribonuclease B OB domain AFA_11315 PF00403 Heavy-metal-associated domain AFA_11335 PF04954 Siderophore-interacting protein AFA_11335 PF08021 Siderophore-interacting FAD-binding domain AFA_11340 PF03551 Transcriptional regulator PadR-like family AFA_11350 PF00890 FAD binding domain AFA_11350 PF04820 Tryptophan halogenase AFA_11355 PF01478 Type IV leader peptidase family AFA_11360 PF13598 AFA_11360 AFA_11365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_11365 PF03466 LysR substrate binding domain AFA_11370 PF00005 ABC transporter AFA_11375 PF00528 Binding-protein-dependent transport system inner membrane component AFA_11380 PF13419 Haloacid dehalogenase-like hydrolase AFA_11385 PF13343 Bacterial extracellular solute-binding protein AFA_11390 PF01266 FAD dependent oxidoreductase AFA_11395 PF00583 Acetyltransferase (GNAT) family AFA_11405 PF01738 Dienelactone hydrolase family AFA_11410 PF12843 AFA_11410 AFA_11415 PF02798 Glutathione S-transferase, N-terminal domain AFA_11415 PF14497 Glutathione S-transferase, C-terminal domain AFA_11420 PF02566 OsmC-like protein AFA_11425 PF02678 Pirin AFA_11425 PF05726 Pirin C-terminal cupin domain AFA_11430 PF13532 2OG-Fe(II) oxygenase superfamily AFA_11435 PF00795 Carbon-nitrogen hydrolase AFA_11440 PF07690 Major Facilitator Superfamily AFA_11445 PF07690 Major Facilitator Superfamily AFA_11450 PF02311 AraC-like ligand binding domain AFA_11450 PF12833 Helix-turn-helix domain AFA_11455 PF03594 AFA_11455 AFA_11460 PF11450 AFA_11460 AFA_11465 PF03746 LamB/YcsF family AFA_11470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_11470 PF03466 LysR substrate binding domain AFA_11475 PF00941 FAD binding domain in molybdopterin dehydrogenase AFA_11475 PF01799 [2Fe-2S] binding domain AFA_11475 PF03450 CO dehydrogenase flavoprotein C-terminal domain AFA_11480 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFA_11480 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFA_11485 PF02625 XdhC and CoxI family AFA_11485 PF13478 XdhC Rossmann domain AFA_11490 PF01979 Amidohydrolase family AFA_11495 PF04191 Phospholipid methyltransferase AFA_11500 PF00072 Response regulator receiver domain AFA_11500 PF00486 Transcriptional regulatory protein, C terminal AFA_11505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_11510 PF00140 Sigma-70 factor, region 1 AFA_11510 PF03979 Sigma-70 factor, region 1 AFA_11510 PF04539 Sigma-70 region 3 AFA_11510 PF04542 Sigma-70 region 2 AFA_11510 PF04545 Sigma-70, region 4 AFA_11510 PF04546 Sigma-70, non-essential region AFA_11515 PF01807 CHC2 zinc finger AFA_11515 PF08275 DNA primase catalytic core, N-terminal domain AFA_11515 PF08278 DNA primase DnaG DnaB-binding AFA_11515 PF10410 DnaB-helicase binding domain of primase AFA_11515 PF13662 Toprim domain AFA_11520 PF01165 Ribosomal protein S21 AFA_11525 PF00156 Phosphoribosyl transferase domain AFA_11530 PF00709 Adenylosuccinate synthetase AFA_11535 PF13393 Histidyl-tRNA synthetase AFA_11540 PF01145 SPFH domain / Band 7 family AFA_11545 PF01145 SPFH domain / Band 7 family AFA_11545 PF12221 AFA_11545 AFA_11550 PF01926 50S ribosome-binding GTPase AFA_11550 PF13167 AFA_11550 AFA_11550 PF16360 AFA_11550 AFA_11555 PF17209 AFA_11555 AFA_11560 PF00155 Aminotransferase class I and II AFA_11565 PF01926 50S ribosome-binding GTPase AFA_11565 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AFA_11570 PF13360 PQQ-like domain AFA_11575 PF09976 Tetratricopeptide repeat AFA_11580 PF03129 Anticodon binding domain AFA_11580 PF13393 Histidyl-tRNA synthetase AFA_11585 PF04551 GcpE protein AFA_11590 PF13413 Helix-turn-helix domain AFA_11595 PF04055 Radical SAM superfamily AFA_11600 PF00334 Nucleoside diphosphate kinase AFA_11605 PF00133 tRNA synthetases class I (I, L, M and V) AFA_11605 PF08264 Anticodon-binding domain of tRNA AFA_11605 PF10458 Valyl tRNA synthetase tRNA binding arm AFA_11610 PF13847 Methyltransferase domain AFA_11615 PF01746 tRNA (Guanine-1)-methyltransferase AFA_11620 PF01782 RimM N-terminal domain AFA_11625 PF00886 Ribosomal protein S16 AFA_11630 PF01206 Sulfurtransferase TusA AFA_11635 PF01411 tRNA synthetases class II (A) AFA_11635 PF02272 DHHA1 domain AFA_11635 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFA_11640 PF01522 Polysaccharide deacetylase AFA_11645 PF00392 Bacterial regulatory proteins, gntR family AFA_11645 PF07729 FCD domain AFA_11650 PF00576 HIUase/Transthyretin family AFA_11655 PF06181 AFA_11655 AFA_11670 PF03524 Conjugal transfer protein AFA_11670 PF10671 Toxin co-regulated pilus biosynthesis protein Q AFA_11675 PF13416 Bacterial extracellular solute-binding protein AFA_11680 PF01266 FAD dependent oxidoreductase AFA_11685 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_11685 PF00175 Oxidoreductase NAD-binding domain AFA_11685 PF00970 Oxidoreductase FAD-binding domain AFA_11690 PF00521 DNA gyrase/topoisomerase IV, subunit A AFA_11690 PF03989 DNA gyrase C-terminal domain, beta-propeller AFA_11695 PF00204 DNA gyrase B AFA_11695 PF00986 DNA gyrase B subunit, carboxyl terminus AFA_11695 PF01751 Toprim domain AFA_11695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_11700 PF00085 Thioredoxin AFA_11705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFA_11705 PF07497 Rho termination factor, RNA-binding domain AFA_11705 PF07498 Rho termination factor, N-terminal domain AFA_11710 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFA_11710 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFA_11715 PF13354 Beta-lactamase enzyme family AFA_11720 PF05170 AFA_11720 AFA_11720 PF13116 AFA_11720 AFA_11720 PF13502 AFA_11720 AFA_11725 PF03710 Glutamate-ammonia ligase adenylyltransferase AFA_11725 PF08335 GlnD PII-uridylyltransferase AFA_11730 PF02677 AFA_11730 AFA_11735 PF00004 ATPase family associated with various cellular activities (AAA) AFA_11735 PF02861 Clp amino terminal domain AFA_11735 PF07724 AAA domain (Cdc48 subfamily) AFA_11735 PF10431 C-terminal, D2-small domain, of ClpB protein AFA_11740 PF00027 Cyclic nucleotide-binding domain AFA_11740 PF13545 Crp-like helix-turn-helix domain AFA_11750 PF05751 AFA_11750 AFA_11755 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AFA_11755 PF12801 AFA_11755 AFA_11755 PF13746 4Fe-4S dicluster domain AFA_11760 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_11760 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AFA_11765 PF05545 AFA_11765 AFA_11770 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO AFA_11775 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFA_11780 PF03597 AFA_11780 AFA_11785 PF00122 E1-E2 ATPase AFA_11795 PF00463 Isocitrate lyase family AFA_11800 PF14489 QueF-like protein AFA_11800 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AFA_11805 PF07690 Major Facilitator Superfamily AFA_11810 PF01066 CDP-alcohol phosphatidyltransferase AFA_11815 PF01541 GIY-YIG catalytic domain AFA_11815 PF02151 UvrB/uvrC motif AFA_11815 PF08459 UvrC Helix-hairpin-helix N-terminal AFA_11815 PF14520 Helix-hairpin-helix domain AFA_11820 PF00933 Glycosyl hydrolase family 3 N terminal domain AFA_11825 PF01648 4'-phosphopantetheinyl transferase superfamily AFA_11830 PF00501 AMP-binding enzyme AFA_11830 PF14535 AMP-binding enzyme C-terminal domain AFA_11835 PF03061 Thioesterase superfamily AFA_11840 PF00378 Enoyl-CoA hydratase/isomerase family AFA_11845 PF00171 Aldehyde dehydrogenase family AFA_11850 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_11850 PF00175 Oxidoreductase NAD-binding domain AFA_11850 PF00970 Oxidoreductase FAD-binding domain AFA_11855 PF01883 Domain of unknown function DUF59 AFA_11860 PF05138 Phenylacetic acid catabolic protein AFA_11865 PF06243 Phenylacetic acid degradation B AFA_11870 PF05138 Phenylacetic acid catabolic protein AFA_11875 PF00929 Exonuclease AFA_11880 PF01435 Peptidase family M48 AFA_11880 PF16491 AFA_11880 AFA_11885 PF03193 Protein of unknown function, DUF258 AFA_11890 PF00293 NUDIX domain AFA_11895 PF01245 Ribosomal protein L19 AFA_11910 PF00578 AhpC/TSA family AFA_11910 PF10417 C-terminal domain of 1-Cys peroxiredoxin AFA_11915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_11915 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_11915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_11915 PF12418 AFA_11915 AFA_11915 PF12806 AFA_11915 AFA_11920 PF00766 Electron transfer flavoprotein FAD-binding domain AFA_11920 PF01012 Electron transfer flavoprotein domain AFA_11925 PF01012 Electron transfer flavoprotein domain AFA_11930 PF00850 Histone deacetylase domain AFA_11935 PF13406 Transglycosylase SLT domain AFA_11940 PF00291 Pyridoxal-phosphate dependent enzyme AFA_11945 PF12836 Helix-hairpin-helix motif AFA_11950 PF01370 NAD dependent epimerase/dehydratase family AFA_11955 PF00294 pfkB family carbohydrate kinase AFA_11965 PF06305 AFA_11965 AFA_11970 PF00216 Bacterial DNA-binding protein AFA_11975 PF00575 S1 RNA binding domain AFA_11980 PF02224 Cytidylate kinase AFA_11985 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFA_11990 PF02153 Prephenate dehydrogenase AFA_11995 PF00800 Prephenate dehydratase AFA_11995 PF01817 Chorismate mutase type II AFA_11995 PF01842 ACT domain AFA_12000 PF00266 Aminotransferase class-V AFA_12005 PF00521 DNA gyrase/topoisomerase IV, subunit A AFA_12005 PF03989 DNA gyrase C-terminal domain, beta-propeller AFA_12010 PF00691 OmpA family AFA_12015 PF13489 Methyltransferase domain AFA_12020 PF13419 Haloacid dehalogenase-like hydrolase AFA_12025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_12025 PF03466 LysR substrate binding domain AFA_12035 PF00037 4Fe-4S binding domain AFA_12035 PF11953 Domain of unknown function (DUF3470) AFA_12040 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family AFA_12045 PF00593 TonB dependent receptor AFA_12045 PF07715 TonB-dependent Receptor Plug Domain AFA_12060 PF00199 Catalase AFA_12060 PF06628 Catalase-related immune-responsive AFA_12065 PF00149 Calcineurin-like phosphoesterase AFA_12070 PF08713 DNA alkylation repair enzyme AFA_12075 PF01047 MarR family AFA_12080 PF00155 Aminotransferase class I and II AFA_12085 PF00440 Bacterial regulatory proteins, tetR family AFA_12090 PF01575 MaoC like domain AFA_12095 PF00583 Acetyltransferase (GNAT) family AFA_12100 PF01810 AFA_12100 AFA_12105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_12105 PF03466 LysR substrate binding domain AFA_12110 PF00155 Aminotransferase class I and II AFA_12110 PF00392 Bacterial regulatory proteins, gntR family AFA_12115 PF04299 Putative FMN-binding domain AFA_12120 PF02798 Glutathione S-transferase, N-terminal domain AFA_12120 PF14497 Glutathione S-transferase, C-terminal domain AFA_12135 PF00816 H-NS histone family AFA_12140 PF07424 AFA_12140 AFA_12145 PF01464 Transglycosylase SLT domain AFA_12160 PF05101 AFA_12160 AFA_12165 PF03135 AFA_12165 AFA_12175 PF07996 Type IV secretion system proteins AFA_12190 PF04335 VirB8 protein AFA_12195 PF03524 Conjugal transfer protein AFA_12200 PF03743 Bacterial conjugation TrbI-like protein AFA_12205 PF00437 Type II/IV secretion system protein AFA_12245 PF10412 Type IV secretion-system coupling protein DNA-binding domain AFA_12250 PF08751 TrwC relaxase AFA_12250 PF13604 AAA domain AFA_12260 PF12441 AFA_12260 AFA_12265 PF04365 Protein of unknown function (DUF497) AFA_12270 PF00436 Single-strand binding protein family AFA_12275 PF03230 Antirestriction protein AFA_12295 PF02195 ParB-like nuclease domain AFA_12300 PF02384 N-6 DNA Methylase AFA_12300 PF12161 HsdM N-terminal domain AFA_12305 PF01420 Type I restriction modification DNA specificity domain AFA_12310 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AFA_12310 PF04851 Type III restriction enzyme, res subunit AFA_12315 PF01610 AFA_12315 AFA_12315 PF13542 AFA_12315 AFA_12315 PF14690 AFA_12315 AFA_12320 PF01526 AFA_12320 AFA_12320 PF13700 AFA_12320 AFA_12325 PF00239 Resolvase, N terminal domain AFA_12325 PF02796 Helix-turn-helix domain of resolvase AFA_12330 PF02321 Outer membrane efflux protein AFA_12335 PF01322 Cytochrome C' AFA_12340 PF00005 ABC transporter AFA_12345 PF02687 AFA_12345 AFA_12345 PF12704 MacB-like periplasmic core domain AFA_12350 PF16576 AFA_12350 AFA_12355 PF00440 Bacterial regulatory proteins, tetR family AFA_12355 PF08359 YsiA-like protein, C-terminal region AFA_12360 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AFA_12365 PF00313 'Cold-shock' DNA-binding domain AFA_12375 PF01926 50S ribosome-binding GTPase AFA_12380 PF15943 AFA_12380 AFA_12385 PF00589 Phage integrase family AFA_12385 PF12167 AFA_12385 AFA_12385 PF14659 Phage integrase, N-terminal SAM-like domain AFA_12395 PF00375 Sodium:dicarboxylate symporter family AFA_12400 PF01810 AFA_12400 AFA_12410 PF05014 Nucleoside 2-deoxyribosyltransferase AFA_12415 PF01380 SIS domain AFA_12420 PF04341 AFA_12420 AFA_12425 PF00474 Sodium:solute symporter family AFA_12430 PF00072 Response regulator receiver domain AFA_12430 PF00196 Bacterial regulatory proteins, luxR family AFA_12435 PF00072 Response regulator receiver domain AFA_12435 PF00512 His Kinase A (phospho-acceptor) domain AFA_12435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_12435 PF12860 AFA_12435 AFA_12440 PF01747 ATP-sulfurylase AFA_12440 PF14306 PUA-like domain AFA_12445 PF07690 Major Facilitator Superfamily AFA_12455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_12455 PF03466 LysR substrate binding domain AFA_12460 PF01564 Spermine/spermidine synthase AFA_12460 PF02675 S-adenosylmethionine decarboxylase AFA_12465 PF00512 His Kinase A (phospho-acceptor) domain AFA_12465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_12470 PF00072 Response regulator receiver domain AFA_12470 PF12728 Helix-turn-helix domain AFA_12475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFA_12475 PF08447 PAS fold AFA_12480 PF01169 AFA_12480 AFA_12485 PF13231 AFA_12485 AFA_12490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_12490 PF03466 LysR substrate binding domain AFA_12495 PF02525 Flavodoxin-like fold AFA_12500 PF00925 GTP cyclohydrolase II AFA_12510 PF01292 Prokaryotic cytochrome b561 AFA_12515 PF03109 AFA_12515 AFA_12520 PF04228 AFA_12520 AFA_12530 PF00543 Nitrogen regulatory protein P-II AFA_12535 PF00909 Ammonium Transporter Family AFA_12540 PF01322 Cytochrome C' AFA_12545 PF00206 Lyase AFA_12545 PF08328 Adenylosuccinate lyase C-terminal AFA_12550 PF13410 Glutathione S-transferase, C-terminal domain AFA_12550 PF13417 Glutathione S-transferase, N-terminal domain AFA_12555 PF12833 Helix-turn-helix domain AFA_12560 PF07859 alpha/beta hydrolase fold AFA_12565 PF01925 AFA_12565 AFA_12570 PF03054 tRNA methyl transferase AFA_12575 PF01565 FAD binding domain AFA_12575 PF02913 FAD linked oxidases, C-terminal domain AFA_12580 PF00793 DAHP synthetase I family AFA_12585 PF04328 AFA_12585 AFA_12590 PF02554 AFA_12590 AFA_12590 PF13722 AFA_12590 AFA_12595 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_12600 PF00528 Binding-protein-dependent transport system inner membrane component AFA_12605 PF00528 Binding-protein-dependent transport system inner membrane component AFA_12610 PF00005 ABC transporter AFA_12615 PF09998 AFA_12615 AFA_12625 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AFA_12630 PF06339 AFA_12630 AFA_12635 PF00202 Aminotransferase class-III AFA_12640 PF00583 Acetyltransferase (GNAT) family AFA_12645 PF01047 MarR family AFA_12655 PF00892 EamA-like transporter family AFA_12660 PF01523 Putative modulator of DNA gyrase AFA_12665 PF00816 H-NS histone family AFA_12670 PF13590 Domain of unknown function (DUF4136) AFA_12675 PF01433 Peptidase family M1 AFA_12675 PF11940 Domain of unknown function (DUF3458) AFA_12675 PF17432 AFA_12675 AFA_12680 PF00316 Fructose-1-6-bisphosphatase AFA_12685 PF00107 Zinc-binding dehydrogenase AFA_12685 PF08240 Alcohol dehydrogenase GroES-like domain AFA_12690 PF00892 EamA-like transporter family AFA_12695 PF00180 Isocitrate/isopropylmalate dehydrogenase AFA_12700 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFA_12705 PF05872 AFA_12705 AFA_12710 PF01709 Transcriptional regulator AFA_12715 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AFA_12715 PF02843 Phosphoribosylglycinamide synthetase, C domain AFA_12715 PF02844 Phosphoribosylglycinamide synthetase, N domain AFA_12720 PF01218 Coproporphyrinogen III oxidase AFA_12725 PF01467 Cytidylyltransferase AFA_12730 PF02410 Oligomerisation domain AFA_12735 PF02590 Predicted SPOUT methyltransferase AFA_12740 PF02545 Maf-like protein AFA_12745 PF13098 Thioredoxin-like domain AFA_12755 PF06629 AFA_12755 AFA_12760 PF01253 Translation initiation factor SUI1 AFA_12765 PF06097 AFA_12765 AFA_12770 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFA_12770 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFA_12775 PF02798 Glutathione S-transferase, N-terminal domain AFA_12780 PF02401 LytB protein AFA_12785 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFA_12790 PF04002 RadC-like JAB domain AFA_12795 PF01197 Ribosomal protein L31 AFA_12805 PF01554 MatE AFA_12810 PF00005 ABC transporter AFA_12815 PF00528 Binding-protein-dependent transport system inner membrane component AFA_12820 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AFA_12825 PF02353 Mycolic acid cyclopropane synthetase AFA_12830 PF07690 Major Facilitator Superfamily AFA_12835 PF00830 Ribosomal L28 family AFA_12840 PF00471 Ribosomal protein L33 AFA_12845 PF00133 tRNA synthetases class I (I, L, M and V) AFA_12845 PF08264 Anticodon-binding domain of tRNA AFA_12845 PF09334 tRNA synthetases class I (M) AFA_12845 PF13603 Leucyl-tRNA synthetase, Domain 2 AFA_12850 PF04390 Lipopolysaccharide-assembly AFA_12855 PF06144 DNA polymerase III, delta subunit AFA_12860 PF00171 Aldehyde dehydrogenase family AFA_12865 PF03653 AFA_12865 AFA_12870 PF01170 Putative RNA methylase family UPF0020 AFA_12870 PF02926 THUMP domain AFA_12875 PF06271 AFA_12875 AFA_12880 PF01430 Hsp33 protein AFA_12890 PF04977 Septum formation initiator AFA_12895 PF00113 Enolase, C-terminal TIM barrel domain AFA_12895 PF03952 Enolase, N-terminal domain AFA_12900 PF12802 MarR family AFA_12905 PF07690 Major Facilitator Superfamily AFA_12910 PF00106 short chain dehydrogenase AFA_12915 PF07045 Protein of unknown function (DUF1330) AFA_12920 PF00793 DAHP synthetase I family AFA_12925 PF00117 Glutamine amidotransferase class-I AFA_12925 PF06418 CTP synthase N-terminus AFA_12930 PF00557 Metallopeptidase family M24 AFA_12930 PF01321 Creatinase/Prolidase N-terminal domain AFA_12930 PF16188 AFA_12930 AFA_12930 PF16189 AFA_12930 AFA_12935 PF01144 Coenzyme A transferase AFA_12940 PF01144 Coenzyme A transferase AFA_12945 PF13279 Thioesterase-like superfamily AFA_12950 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase AFA_12950 PF13450 NAD(P)-binding Rossmann-like domain AFA_12955 PF00892 EamA-like transporter family AFA_12960 PF00501 AMP-binding enzyme AFA_12960 PF13193 AMP-binding enzyme C-terminal domain AFA_12960 PF16177 AFA_12960 AFA_12965 PF11700 AFA_12965 AFA_12970 PF00877 NlpC/P60 family AFA_12975 PF10087 AFA_12975 AFA_12980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_12980 PF03466 LysR substrate binding domain AFA_12985 PF00171 Aldehyde dehydrogenase family AFA_12990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_12990 PF03466 LysR substrate binding domain AFA_12995 PF00593 TonB dependent receptor AFA_12995 PF07715 TonB-dependent Receptor Plug Domain AFA_13000 PF01497 Periplasmic binding protein AFA_13005 PF01032 FecCD transport family AFA_13010 PF00005 ABC transporter AFA_13015 PF00296 Luciferase-like monooxygenase AFA_13020 PF00440 Bacterial regulatory proteins, tetR family AFA_13025 PF03739 AFA_13025 AFA_13030 PF00883 Cytosol aminopeptidase family, catalytic domain AFA_13030 PF02789 Cytosol aminopeptidase family, N-terminal domain AFA_13035 PF04364 DNA polymerase III chi subunit, HolC AFA_13040 PF01027 Inhibitor of apoptosis-promoting Bax1 AFA_13045 PF00132 Bacterial transferase hexapeptide (six repeats) AFA_13050 PF00892 EamA-like transporter family AFA_13055 PF13470 AFA_13055 AFA_13060 PF02565 Recombination protein O C terminal AFA_13060 PF11967 Recombination protein O N terminal AFA_13065 PF01926 50S ribosome-binding GTPase AFA_13065 PF07650 KH domain AFA_13070 PF00035 Double-stranded RNA binding motif AFA_13070 PF14622 Ribonuclease-III-like AFA_13075 PF00717 Peptidase S24-like AFA_13075 PF10502 Signal peptidase, peptidase S26 AFA_13080 PF00009 Elongation factor Tu GTP binding domain AFA_13080 PF00679 Elongation factor G C-terminus AFA_13080 PF03144 Elongation factor Tu domain 2 AFA_13080 PF06421 GTP-binding protein LepA C-terminus AFA_13085 PF13180 PDZ domain AFA_13085 PF13365 Trypsin-like peptidase domain AFA_13090 PF03888 MucB/RseB family AFA_13090 PF17188 AFA_13090 AFA_13095 PF03872 Anti sigma-E protein RseA, N-terminal domain AFA_13100 PF04542 Sigma-70 region 2 AFA_13100 PF08281 Sigma-70, region 4 AFA_13110 PF00109 Beta-ketoacyl synthase, N-terminal domain AFA_13110 PF02801 Beta-ketoacyl synthase, C-terminal domain AFA_13115 PF00550 Phosphopantetheine attachment site AFA_13120 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_13125 PF00698 Acyl transferase domain AFA_13130 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFA_13130 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFA_13135 PF02504 Fatty acid synthesis protein AFA_13140 PF01783 Ribosomal L32p protein family AFA_13145 PF02620 AFA_13145 AFA_13150 PF02545 Maf-like protein AFA_13160 PF01471 Putative peptidoglycan binding domain AFA_13160 PF01510 N-acetylmuramoyl-L-alanine amidase AFA_13165 PF01794 AFA_13165 AFA_13170 PF00174 Oxidoreductase molybdopterin binding domain AFA_13175 PF13419 Haloacid dehalogenase-like hydrolase AFA_13180 PF00849 RNA pseudouridylate synthase AFA_13180 PF01479 S4 domain AFA_13185 PF00575 S1 RNA binding domain AFA_13185 PF10150 Ribonuclease E/G family AFA_13190 PF01039 Carboxyl transferase domain AFA_13195 PF00290 Tryptophan synthase alpha chain AFA_13200 PF00291 Pyridoxal-phosphate dependent enzyme AFA_13205 PF02824 TGS domain AFA_13205 PF04607 Region found in RelA / SpoT proteins AFA_13205 PF13291 ACT domain AFA_13205 PF13328 HD domain AFA_13210 PF03358 NADPH-dependent FMN reductase AFA_13215 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AFA_13220 PF00037 4Fe-4S binding domain AFA_13220 PF11953 Domain of unknown function (DUF3470) AFA_13225 PF06850 AFA_13225 AFA_13230 PF04060 Putative Fe-S cluster AFA_13230 PF14697 4Fe-4S dicluster domain AFA_13235 PF00633 Helix-hairpin-helix motif AFA_13235 PF00730 HhH-GPD superfamily base excision DNA repair protein AFA_13235 PF10576 Iron-sulfur binding domain of endonuclease III AFA_13240 PF00005 ABC transporter AFA_13245 PF03922 OmpW family AFA_13250 PF00005 ABC transporter AFA_13255 PF00005 ABC transporter AFA_13255 PF02653 AFA_13255 AFA_13255 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_13260 PF02653 AFA_13260 AFA_13265 PF13458 Periplasmic binding protein AFA_13270 PF01641 SelR domain AFA_13275 PF04279 AFA_13275 AFA_13280 PF01722 BolA-like protein AFA_13285 PF00639 PPIC-type PPIASE domain AFA_13290 PF00533 BRCA1 C Terminus (BRCT) domain AFA_13290 PF01653 NAD-dependent DNA ligase adenylation domain AFA_13290 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AFA_13290 PF03120 NAD-dependent DNA ligase OB-fold domain AFA_13290 PF12826 Helix-hairpin-helix motif AFA_13290 PF14520 Helix-hairpin-helix domain AFA_13295 PF04354 ZipA, C-terminal FtsZ-binding domain AFA_13300 PF02463 RecF/RecN/SMC N terminal domain AFA_13300 PF06470 SMC proteins Flexible Hinge Domain AFA_13305 PF07690 Major Facilitator Superfamily AFA_13310 PF03167 Uracil DNA glycosylase superfamily AFA_13315 PF00583 Acetyltransferase (GNAT) family AFA_13315 PF00814 Glycoprotease family AFA_13320 PF00072 Response regulator receiver domain AFA_13320 PF00486 Transcriptional regulatory protein, C terminal AFA_13325 PF00512 His Kinase A (phospho-acceptor) domain AFA_13325 PF00672 HAMP domain AFA_13325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_13325 PF16524 AFA_13325 AFA_13330 PF02542 YgbB family AFA_13335 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AFA_13340 PF00270 DEAD/DEAH box helicase AFA_13340 PF00271 Helicase conserved C-terminal domain AFA_13340 PF02559 CarD-like/TRCF domain AFA_13340 PF03461 TRCF domain AFA_13350 PF12710 haloacid dehalogenase-like hydrolase AFA_13350 PF13284 AFA_13350 AFA_13355 PF03060 Nitronate monooxygenase AFA_13360 PF10993 AFA_13360 AFA_13365 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFA_13370 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFA_13370 PF01059 AFA_13370 AFA_13375 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFA_13375 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFA_13380 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFA_13385 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AFA_13390 PF12838 4Fe-4S dicluster domain AFA_13395 PF00146 NADH dehydrogenase AFA_13400 PF00384 Molybdopterin oxidoreductase AFA_13400 PF01568 Molydopterin dinucleotide binding domain AFA_13400 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFA_13400 PF13510 2Fe-2S iron-sulfur cluster binding domain AFA_13405 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFA_13405 PF10531 SLBB domain AFA_13405 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFA_13410 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AFA_13415 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFA_13420 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AFA_13425 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFA_13430 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AFA_13435 PF13609 Gram-negative porin AFA_13445 PF03840 Preprotein translocase SecG subunit AFA_13450 PF00121 Triosephosphate isomerase AFA_13455 PF00107 Zinc-binding dehydrogenase AFA_13455 PF08240 Alcohol dehydrogenase GroES-like domain AFA_13475 PF00013 KH domain AFA_13475 PF00575 S1 RNA binding domain AFA_13475 PF01138 3' exoribonuclease family, domain 1 AFA_13475 PF03725 3' exoribonuclease family, domain 2 AFA_13475 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AFA_13480 PF00312 Ribosomal protein S15 AFA_13485 PF01066 CDP-alcohol phosphatidyltransferase AFA_13490 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AFA_13490 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AFA_13495 PF10369 Small subunit of acetolactate synthase AFA_13495 PF13710 ACT domain AFA_13500 PF00205 Thiamine pyrophosphate enzyme, central domain AFA_13500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFA_13500 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFA_13505 PF12805 AFA_13505 AFA_13505 PF13515 AFA_13505 AFA_13510 PF03883 AFA_13510 AFA_13515 PF00106 short chain dehydrogenase AFA_13525 PF00144 Beta-lactamase AFA_13525 PF11954 AFA_13525 AFA_13540 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFA_13540 PF02403 Seryl-tRNA synthetase N-terminal domain AFA_13545 PF00004 ATPase family associated with various cellular activities (AAA) AFA_13545 PF12002 MgsA AAA+ ATPase C terminal AFA_13545 PF16193 AFA_13545 AFA_13550 PF03548 Outer membrane lipoprotein carrier protein LolA AFA_13555 PF01580 FtsK/SpoIIIE family AFA_13555 PF09397 Ftsk gamma domain AFA_13555 PF13491 AFA_13555 AFA_13560 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_13565 PF01713 Smr domain AFA_13570 PF14559 Tetratricopeptide repeat AFA_13580 PF07690 Major Facilitator Superfamily AFA_13585 PF01613 Flavin reductase like domain AFA_13590 PF07876 Stress responsive A/B Barrel Domain AFA_13595 PF07848 PaaX-like protein AFA_13595 PF08223 PaaX-like protein C-terminal domain AFA_13600 PF00135 Carboxylesterase family AFA_13605 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFA_13610 PF00180 Isocitrate/isopropylmalate dehydrogenase AFA_13615 PF08897 AFA_13615 AFA_13620 PF00034 Cytochrome c AFA_13630 PF00004 ATPase family associated with various cellular activities (AAA) AFA_13635 PF13302 Acetyltransferase (GNAT) domain AFA_13640 PF05762 VWA domain containing CoxE-like protein AFA_13645 PF11180 AFA_13645 AFA_13650 PF00158 Sigma-54 interaction domain AFA_13650 PF02954 Bacterial regulatory protein, Fis family AFA_13655 PF13400 AFA_13655 AFA_13660 PF12266 AFA_13660 AFA_13665 PF14559 Tetratricopeptide repeat AFA_13670 PF00482 Type II secretion system (T2SS), protein F AFA_13675 PF00482 Type II secretion system (T2SS), protein F AFA_13680 PF00437 Type II/IV secretion system protein AFA_13690 PF00263 AFA_13690 AFA_13690 PF13629 AFA_13690 AFA_13695 PF08666 SAF domain AFA_13695 PF16976 AFA_13695 AFA_13700 PF07811 AFA_13700 AFA_13705 PF07811 AFA_13705 AFA_13710 PF01478 Type IV leader peptidase family AFA_13715 PF04964 AFA_13715 AFA_13720 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AFA_13720 PF08479 POTRA domain, ShlB-type AFA_13725 PF15984 AFA_13725 AFA_13730 PF01047 MarR family AFA_13735 PF15984 AFA_13735 AFA_13745 PF12802 MarR family AFA_13750 PF00675 Insulinase (Peptidase family M16) AFA_13750 PF05193 Peptidase M16 inactive domain AFA_13755 PF00226 DnaJ domain AFA_13755 PF00684 DnaJ central domain AFA_13755 PF01556 DnaJ C terminal domain AFA_13760 PF00012 Hsp70 protein AFA_13765 PF01025 GrpE AFA_13770 PF00762 Ferrochelatase AFA_13775 PF01628 HrcA protein C terminal domain AFA_13775 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AFA_13780 PF01513 ATP-NAD kinase AFA_13785 PF02463 RecF/RecN/SMC N terminal domain AFA_13790 PF01475 Ferric uptake regulator family AFA_13795 PF04355 SmpA / OmlA family AFA_13800 PF01113 Dihydrodipicolinate reductase, N-terminus AFA_13800 PF05173 Dihydrodipicolinate reductase, C-terminus AFA_13805 PF00392 Bacterial regulatory proteins, gntR family AFA_13805 PF07729 FCD domain AFA_13810 PF01565 FAD binding domain AFA_13810 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AFA_13830 PF00563 EAL domain AFA_13830 PF00990 GGDEF domain AFA_13830 PF01590 GAF domain AFA_13830 PF13426 PAS domain AFA_13835 PF05163 DinB family AFA_13840 PF00593 TonB dependent receptor AFA_13840 PF07715 TonB-dependent Receptor Plug Domain AFA_13845 PF07690 Major Facilitator Superfamily AFA_13850 PF12833 Helix-turn-helix domain AFA_13860 PF00756 Putative esterase AFA_13865 PF00171 Aldehyde dehydrogenase family AFA_13870 PF00171 Aldehyde dehydrogenase family AFA_13870 PF01619 Proline dehydrogenase AFA_13870 PF14850 DNA-binding domain of Proline dehydrogenase AFA_13875 PF01037 AsnC family AFA_13875 PF13412 Winged helix-turn-helix DNA-binding AFA_13880 PF01381 Helix-turn-helix AFA_13880 PF07883 Cupin domain AFA_13885 PF02423 Ornithine cyclodeaminase/mu-crystallin family AFA_13890 PF00083 Sugar (and other) transporter AFA_13890 PF07690 Major Facilitator Superfamily AFA_13895 PF00270 DEAD/DEAH box helicase AFA_13895 PF00271 Helicase conserved C-terminal domain AFA_13895 PF03880 DbpA RNA binding domain AFA_13900 PF05973 AFA_13900 AFA_13905 PF01381 Helix-turn-helix AFA_13910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_13910 PF03466 LysR substrate binding domain AFA_13915 PF00355 Rieske [2Fe-2S] domain AFA_13915 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFA_13920 PF00866 Ring hydroxylating beta subunit AFA_13925 PF00355 Rieske [2Fe-2S] domain AFA_13930 PF00106 short chain dehydrogenase AFA_13935 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_13935 PF14759 Reductase C-terminal AFA_13940 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFA_13945 PF12697 Alpha/beta hydrolase family AFA_13950 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFA_13955 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFA_13955 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AFA_13960 PF00682 HMGL-like AFA_13960 PF07836 DmpG-like communication domain AFA_13965 PF07690 Major Facilitator Superfamily AFA_13980 PF01425 Amidase AFA_13985 PF00155 Aminotransferase class I and II AFA_13985 PF00392 Bacterial regulatory proteins, gntR family AFA_13990 PF07690 Major Facilitator Superfamily AFA_14000 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AFA_14005 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_14010 PF11339 AFA_14010 AFA_14015 PF00108 Thiolase, N-terminal domain AFA_14015 PF02803 Thiolase, C-terminal domain AFA_14020 PF00106 short chain dehydrogenase AFA_14025 PF09361 AFA_14025 AFA_14030 PF12698 ABC-2 family transporter protein AFA_14035 PF00005 ABC transporter AFA_14035 PF12698 ABC-2 family transporter protein AFA_14040 PF16576 AFA_14040 AFA_14045 PF02321 Outer membrane efflux protein AFA_14050 PF07167 AFA_14050 AFA_14050 PF12551 AFA_14050 AFA_14055 PF00440 Bacterial regulatory proteins, tetR family AFA_14055 PF16859 AFA_14055 AFA_14060 PF02592 AFA_14060 AFA_14065 PF06508 Queuosine biosynthesis protein QueC AFA_14070 PF00464 Serine hydroxymethyltransferase AFA_14075 PF00266 Aminotransferase class-V AFA_14080 PF00155 Aminotransferase class I and II AFA_14080 PF00392 Bacterial regulatory proteins, gntR family AFA_14085 PF00464 Serine hydroxymethyltransferase AFA_14090 PF11583 P-aminobenzoate N-oxygenase AurF AFA_14095 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_14095 PF00175 Oxidoreductase NAD-binding domain AFA_14100 PF00117 Glutamine amidotransferase class-I AFA_14105 PF08543 Phosphomethylpyrimidine kinase AFA_14110 PF02028 BCCT family transporter AFA_14115 PF00376 MerR family regulatory protein AFA_14115 PF09278 MerR, DNA binding AFA_14120 PF16576 AFA_14120 AFA_14125 PF00873 AcrB/AcrD/AcrF family AFA_14130 PF02321 Outer membrane efflux protein AFA_14140 PF03861 ANTAR domain AFA_14145 PF13433 Periplasmic binding protein domain AFA_14150 PF02293 AmiS/UreI family transporter AFA_14155 PF00892 EamA-like transporter family AFA_14165 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_14170 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO AFA_14175 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFA_14180 PF00155 Aminotransferase class I and II AFA_14180 PF00392 Bacterial regulatory proteins, gntR family AFA_14185 PF13924 AFA_14185 AFA_14190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_14190 PF03466 LysR substrate binding domain AFA_14195 PF00202 Aminotransferase class-III AFA_14200 PF01177 Asp/Glu/Hydantoin racemase AFA_14205 PF13385 Concanavalin A-like lectin/glucanases superfamily AFA_14215 PF04185 Phosphoesterase family AFA_14215 PF05506 AFA_14215 AFA_14230 PF00691 OmpA family AFA_14230 PF04355 SmpA / OmlA family AFA_14235 PF03895 YadA-like C-terminal region AFA_14235 PF05658 Head domain of trimeric autotransporter adhesin AFA_14235 PF05662 Coiled stalk of trimeric autotransporter adhesin AFA_14235 PF13018 AFA_14235 AFA_14240 PF00563 EAL domain AFA_14245 PF00239 Resolvase, N terminal domain AFA_14250 PF00482 Type II secretion system (T2SS), protein F AFA_14255 PF00437 Type II/IV secretion system protein AFA_14260 PF00263 AFA_14260 AFA_14260 PF03958 Bacterial type II/III secretion system short domain AFA_14265 PF01203 AFA_14265 AFA_14270 PF04612 Type II secretion system (T2SS), protein M AFA_14275 PF12693 GspL periplasmic domain AFA_14280 PF03934 Type II secretion system (T2SS), protein K AFA_14285 PF07963 Prokaryotic N-terminal methylation motif AFA_14290 PF02501 Type II secretion system (T2SS), protein I AFA_14290 PF07963 Prokaryotic N-terminal methylation motif AFA_14295 PF07963 Prokaryotic N-terminal methylation motif AFA_14300 PF07963 Prokaryotic N-terminal methylation motif AFA_14300 PF08334 Type II secretion system (T2SS), protein G AFA_14310 PF00571 CBS domain AFA_14310 PF04982 AFA_14310 AFA_14315 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFA_14315 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal AFA_14320 PF01925 AFA_14320 AFA_14325 PF00206 Lyase AFA_14325 PF10415 Fumarase C C-terminus AFA_14330 PF01047 MarR family AFA_14335 PF11161 AFA_14335 AFA_14340 PF00293 NUDIX domain AFA_14340 PF14803 Nudix N-terminal AFA_14345 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AFA_14350 PF04376 AFA_14350 AFA_14350 PF04377 AFA_14350 AFA_14355 PF01180 Dihydroorotate dehydrogenase AFA_14360 PF09361 AFA_14360 AFA_14365 PF01614 Bacterial transcriptional regulator AFA_14365 PF09339 IclR helix-turn-helix domain AFA_14370 PF00994 Probable molybdopterin binding domain AFA_14375 PF07264 Etoposide-induced protein 2 AFA_14380 PF00085 Thioredoxin AFA_14385 PF00270 DEAD/DEAH box helicase AFA_14385 PF00271 Helicase conserved C-terminal domain AFA_14390 PF05437 AFA_14390 AFA_14395 PF03591 AFA_14395 AFA_14400 PF10276 Zinc-finger domain AFA_14405 PF00561 alpha/beta hydrolase fold AFA_14410 PF01435 Peptidase family M48 AFA_14410 PF14559 Tetratricopeptide repeat AFA_14415 PF09678 AFA_14415 AFA_14430 PF01494 FAD binding domain AFA_14435 PF01207 Dihydrouridine synthase (Dus) AFA_14440 PF02954 Bacterial regulatory protein, Fis family AFA_14445 PF01808 AICARFT/IMPCHase bienzyme AFA_14445 PF02142 MGS-like domain AFA_14450 PF02075 Crossover junction endodeoxyribonuclease RuvC AFA_14455 PF01330 RuvA N terminal domain AFA_14455 PF07499 RuvA, C-terminal domain AFA_14455 PF14520 Helix-hairpin-helix domain AFA_14460 PF00291 Pyridoxal-phosphate dependent enzyme AFA_14465 PF05491 Holliday junction DNA helicase ruvB C-terminus AFA_14465 PF05496 Holliday junction DNA helicase ruvB N-terminus AFA_14475 PF01979 Amidohydrolase family AFA_14480 PF02201 SWIB/MDM2 domain AFA_14485 PF00875 DNA photolyase AFA_14485 PF03441 FAD binding domain of DNA photolyase AFA_14530 PF00581 Rhodanese-like domain AFA_14535 PF04143 AFA_14535 AFA_14545 PF01625 Peptide methionine sulfoxide reductase AFA_14550 PF01790 AFA_14550 AFA_14560 PF05164 Cell division protein ZapA AFA_14570 PF07331 AFA_14570 AFA_14575 PF01970 AFA_14575 AFA_14580 PF00528 Binding-protein-dependent transport system inner membrane component AFA_14585 PF00005 ABC transporter AFA_14585 PF08402 TOBE domain AFA_14590 PF13343 Bacterial extracellular solute-binding protein AFA_14595 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFA_14595 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFA_14600 PF00512 His Kinase A (phospho-acceptor) domain AFA_14600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_14600 PF08521 AFA_14600 AFA_14605 PF00072 Response regulator receiver domain AFA_14605 PF00486 Transcriptional regulatory protein, C terminal AFA_14610 PF00293 NUDIX domain AFA_14615 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFA_14615 PF03129 Anticodon binding domain AFA_14615 PF04073 Aminoacyl-tRNA editing domain AFA_14620 PF03061 Thioesterase superfamily AFA_14625 PF01618 AFA_14625 AFA_14630 PF02472 Biopolymer transport protein ExbD/TolR AFA_14635 PF13103 TonB C terminal AFA_14640 PF04052 TolB amino-terminal domain AFA_14640 PF07676 WD40-like Beta Propeller Repeat AFA_14645 PF00691 OmpA family AFA_14650 PF13525 Outer membrane lipoprotein AFA_14655 PF12697 Alpha/beta hydrolase family AFA_14660 PF04314 Protein of unknown function (DUF461) AFA_14665 PF03061 Thioesterase superfamily AFA_14670 PF01554 MatE AFA_14675 PF02608 Basic membrane protein AFA_14680 PF02653 AFA_14680 AFA_14685 PF02653 AFA_14685 AFA_14690 PF00005 ABC transporter AFA_14695 PF01679 AFA_14695 AFA_14700 PF16654 AFA_14700 AFA_14705 PF01810 AFA_14705 AFA_14710 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AFA_14710 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AFA_14715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_14715 PF03466 LysR substrate binding domain AFA_14725 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_14725 PF13192 Thioredoxin domain AFA_14730 PF00578 AhpC/TSA family AFA_14730 PF10417 C-terminal domain of 1-Cys peroxiredoxin AFA_14735 PF00155 Aminotransferase class I and II AFA_14735 PF00392 Bacterial regulatory proteins, gntR family AFA_14740 PF00892 EamA-like transporter family AFA_14745 PF01507 Phosphoadenosine phosphosulfate reductase family AFA_14750 PF01507 Phosphoadenosine phosphosulfate reductase family AFA_14755 PF00009 Elongation factor Tu GTP binding domain AFA_14760 PF00324 Amino acid permease AFA_14765 PF00171 Aldehyde dehydrogenase family AFA_14770 PF01266 FAD dependent oxidoreductase AFA_14775 PF07063 Domain of unknown function (DUF1338) AFA_14780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_14780 PF03466 LysR substrate binding domain AFA_14785 PF00871 Acetokinase family AFA_14790 PF01515 Phosphate acetyl/butaryl transferase AFA_14795 PF07080 Protein of unknown function (DUF1348) AFA_14800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_14800 PF03466 LysR substrate binding domain AFA_14805 PF02678 Pirin AFA_14810 PF00990 GGDEF domain AFA_14815 PF01425 Amidase AFA_14825 PF00166 Chaperonin 10 Kd subunit AFA_14830 PF00118 TCP-1/cpn60 chaperonin family AFA_14835 PF01219 Prokaryotic diacylglycerol kinase AFA_14840 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AFA_14845 PF02515 CoA-transferase family III AFA_14850 PF03401 Tripartite tricarboxylate transporter family receptor AFA_14855 PF01614 Bacterial transcriptional regulator AFA_14855 PF09339 IclR helix-turn-helix domain AFA_14860 PF02464 Competence-damaged protein AFA_14865 PF04608 Phosphatidylglycerophosphatase A AFA_14870 PF00586 AIR synthase related protein, N-terminal domain AFA_14870 PF02769 AIR synthase related protein, C-terminal domain AFA_14875 PF01029 NusB family AFA_14880 PF00885 6,7-dimethyl-8-ribityllumazine synthase AFA_14885 PF00925 GTP cyclohydrolase II AFA_14885 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFA_14890 PF01614 Bacterial transcriptional regulator AFA_14890 PF09339 IclR helix-turn-helix domain AFA_14895 PF01928 CYTH domain AFA_14895 PF05235 CHAD domain AFA_14900 PF00448 SRP54-type protein, GTPase domain AFA_14900 PF02881 SRP54-type protein, helical bundle domain AFA_14905 PF03602 Conserved hypothetical protein 95 AFA_14910 PF01467 Cytidylyltransferase AFA_14915 PF00037 4Fe-4S binding domain AFA_14920 PF03476 MOSC N-terminal beta barrel domain AFA_14925 PF05170 AFA_14925 AFA_14930 PF01053 Cys/Met metabolism PLP-dependent enzyme AFA_14935 PF06078 Bacterial protein of unknown function (DUF937) AFA_14940 PF02423 Ornithine cyclodeaminase/mu-crystallin family AFA_14945 PF07238 PilZ domain AFA_14945 PF07317 Flagellar regulator YcgR AFA_14950 PF12804 MobA-like NTP transferase domain AFA_14955 PF03797 Autotransporter beta-domain AFA_14960 PF00857 Isochorismatase family AFA_14970 PF00561 alpha/beta hydrolase fold AFA_14975 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFA_14980 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_14980 PF01799 [2Fe-2S] binding domain AFA_14985 PF00034 Cytochrome c AFA_14985 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_14990 PF06041 Bacterial protein of unknown function (DUF924) AFA_14995 PF00005 ABC transporter AFA_15000 PF00005 ABC transporter AFA_15005 PF02653 AFA_15005 AFA_15010 PF13458 Periplasmic binding protein AFA_15015 PF01804 Penicillin amidase AFA_15020 PF00990 GGDEF domain AFA_15025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_15025 PF03466 LysR substrate binding domain AFA_15030 PF00884 Sulfatase AFA_15035 PF03401 Tripartite tricarboxylate transporter family receptor AFA_15040 PF03401 Tripartite tricarboxylate transporter family receptor AFA_15045 PF12706 Beta-lactamase superfamily domain AFA_15050 PF00392 Bacterial regulatory proteins, gntR family AFA_15050 PF07702 UTRA domain AFA_15055 PF03704 Bacterial transcriptional activator domain AFA_15055 PF13191 AAA ATPase domain AFA_15060 PF13091 PLD-like domain AFA_15065 PF00892 EamA-like transporter family AFA_15070 PF01256 Carbohydrate kinase AFA_15070 PF03853 YjeF-related protein N-terminus AFA_15075 PF02625 XdhC and CoxI family AFA_15075 PF13478 XdhC Rossmann domain AFA_15080 PF06808 AFA_15080 AFA_15085 PF04290 AFA_15085 AFA_15090 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_15090 PF01799 [2Fe-2S] binding domain AFA_15090 PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) AFA_15095 PF00941 FAD binding domain in molybdopterin dehydrogenase AFA_15100 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFA_15100 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFA_15105 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_15110 PF00355 Rieske [2Fe-2S] domain AFA_15115 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_15115 PF14759 Reductase C-terminal AFA_15120 PF00355 Rieske [2Fe-2S] domain AFA_15120 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFA_15125 PF00866 Ring hydroxylating beta subunit AFA_15130 PF00857 Isochorismatase family AFA_15140 PF00561 alpha/beta hydrolase fold AFA_15145 PF04909 Amidohydrolase AFA_15150 PF01047 MarR family AFA_15155 PF00005 ABC transporter AFA_15160 PF01032 FecCD transport family AFA_15165 PF01497 Periplasmic binding protein AFA_15170 PF00593 TonB dependent receptor AFA_15170 PF07715 TonB-dependent Receptor Plug Domain AFA_15175 PF02667 AFA_15175 AFA_15190 PF00929 Exonuclease AFA_15195 PF00873 AcrB/AcrD/AcrF family AFA_15200 PF16576 AFA_15200 AFA_15205 PF00075 RNase H AFA_15210 PF08241 Methyltransferase domain AFA_15215 PF00753 Metallo-beta-lactamase superfamily AFA_15215 PF16123 AFA_15215 AFA_15220 PF01464 Transglycosylase SLT domain AFA_15220 PF01476 LysM domain AFA_15225 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_15230 PF00072 Response regulator receiver domain AFA_15230 PF00158 Sigma-54 interaction domain AFA_15230 PF02954 Bacterial regulatory protein, Fis family AFA_15235 PF00512 His Kinase A (phospho-acceptor) domain AFA_15235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_15235 PF02743 Cache domain AFA_15240 PF00375 Sodium:dicarboxylate symporter family AFA_15245 PF13410 Glutathione S-transferase, C-terminal domain AFA_15245 PF13417 Glutathione S-transferase, N-terminal domain AFA_15250 PF00581 Rhodanese-like domain AFA_15255 PF04307 AFA_15255 AFA_15260 PF13767 AFA_15260 AFA_15265 PF04214 AFA_15265 AFA_15270 PF04073 Aminoacyl-tRNA editing domain AFA_15275 PF05995 Cysteine dioxygenase type I AFA_15280 PF00378 Enoyl-CoA hydratase/isomerase family AFA_15285 PF13380 CoA binding domain AFA_15285 PF13549 ATP-grasp domain AFA_15285 PF13607 Succinyl-CoA ligase like flavodoxin domain AFA_15290 PF03401 Tripartite tricarboxylate transporter family receptor AFA_15295 PF00107 Zinc-binding dehydrogenase AFA_15300 PF02515 CoA-transferase family III AFA_15305 PF00378 Enoyl-CoA hydratase/isomerase family AFA_15310 PF01614 Bacterial transcriptional regulator AFA_15310 PF09339 IclR helix-turn-helix domain AFA_15315 PF10649 AFA_15315 AFA_15320 PF08240 Alcohol dehydrogenase GroES-like domain AFA_15320 PF13602 Zinc-binding dehydrogenase AFA_15325 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFA_15330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_15330 PF03466 LysR substrate binding domain AFA_15345 PF04185 Phosphoesterase family AFA_15345 PF05506 AFA_15345 AFA_15350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_15350 PF03466 LysR substrate binding domain AFA_15355 PF13419 Haloacid dehalogenase-like hydrolase AFA_15360 PF00465 Iron-containing alcohol dehydrogenase AFA_15365 PF00528 Binding-protein-dependent transport system inner membrane component AFA_15370 PF00005 ABC transporter AFA_15375 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein AFA_15380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_15380 PF03466 LysR substrate binding domain AFA_15385 PF00501 AMP-binding enzyme AFA_15385 PF13193 AMP-binding enzyme C-terminal domain AFA_15400 PF01810 AFA_15400 AFA_15405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_15405 PF03466 LysR substrate binding domain AFA_15410 PF12840 Helix-turn-helix domain AFA_15415 PF02040 AFA_15415 AFA_15420 PF03960 ArsC family AFA_15425 PF03358 NADPH-dependent FMN reductase AFA_15430 PF00072 Response regulator receiver domain AFA_15430 PF00486 Transcriptional regulatory protein, C terminal AFA_15435 PF00512 His Kinase A (phospho-acceptor) domain AFA_15435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_15435 PF08521 AFA_15435 AFA_15440 PF04076 Bacterial OB fold (BOF) protein AFA_15450 PF01053 Cys/Met metabolism PLP-dependent enzyme AFA_15455 PF07690 Major Facilitator Superfamily AFA_15460 PF14518 Iron-containing redox enzyme AFA_15465 PF00583 Acetyltransferase (GNAT) family AFA_15470 PF01965 DJ-1/PfpI family AFA_15470 PF12833 Helix-turn-helix domain AFA_15480 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFA_15480 PF01872 RibD C-terminal domain AFA_15485 PF03477 ATP cone domain AFA_15490 PF00464 Serine hydroxymethyltransferase AFA_15495 PF01161 Phosphatidylethanolamine-binding protein AFA_15500 PF00579 tRNA synthetases class I (W and Y) AFA_15500 PF01479 S4 domain AFA_15505 PF01551 Peptidase family M23 AFA_15510 PF03702 Uncharacterised protein family (UPF0075) AFA_15515 PF10053 AFA_15515 AFA_15520 PF13538 UvrD-like helicase C-terminal domain AFA_15525 PF01521 Iron-sulphur cluster biosynthesis AFA_15535 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFA_15535 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFA_15540 PF00380 Ribosomal protein S9/S16 AFA_15545 PF00572 Ribosomal protein L13 AFA_15550 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_15555 PF01523 Putative modulator of DNA gyrase AFA_15560 PF04751 Protein of unknown function (DUF615) AFA_15565 PF02230 Phospholipase/Carboxylesterase AFA_15570 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AFA_15570 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFA_15575 PF13302 Acetyltransferase (GNAT) domain AFA_15575 PF13549 ATP-grasp domain AFA_15575 PF13607 Succinyl-CoA ligase like flavodoxin domain AFA_15580 PF00122 E1-E2 ATPase AFA_15580 PF00689 Cation transporting ATPase, C-terminus AFA_15580 PF00690 Cation transporter/ATPase, N-terminus AFA_15580 PF00702 haloacid dehalogenase-like hydrolase AFA_15585 PF00512 His Kinase A (phospho-acceptor) domain AFA_15585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_15590 PF00072 Response regulator receiver domain AFA_15590 PF00196 Bacterial regulatory proteins, luxR family AFA_15595 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFA_15600 PF07152 YaeQ protein AFA_15610 PF01037 AsnC family AFA_15610 PF13412 Winged helix-turn-helix DNA-binding AFA_15615 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AFA_15625 PF02325 AFA_15625 AFA_15630 PF00730 HhH-GPD superfamily base excision DNA repair protein AFA_15630 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFA_15630 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFA_15635 PF05433 AFA_15635 AFA_15640 PF00294 pfkB family carbohydrate kinase AFA_15645 PF11906 AFA_15645 AFA_15650 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AFA_15655 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AFA_15655 PF02785 Biotin carboxylase C-terminal domain AFA_15655 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFA_15660 PF00364 Biotin-requiring enzyme AFA_15665 PF01220 Dehydroquinase class II AFA_15670 PF08534 Redoxin AFA_15675 PF01225 Mur ligase family, catalytic domain AFA_15675 PF02875 Mur ligase family, glutamate ligase domain AFA_15675 PF08245 Mur ligase middle domain AFA_15680 PF05728 Uncharacterised protein family (UPF0227) AFA_15685 PF00773 RNB domain AFA_15690 PF13103 TonB C terminal AFA_15695 PF01488 Shikimate / quinate 5-dehydrogenase AFA_15695 PF08501 Shikimate dehydrogenase substrate binding domain AFA_15700 PF00912 Transglycosylase AFA_15705 PF03739 AFA_15705 AFA_15710 PF00149 Calcineurin-like phosphoesterase AFA_15715 PF01553 Acyltransferase AFA_15720 PF03652 Uncharacterised protein family (UPF0081) AFA_15725 PF02622 Uncharacterized ACR, COG1678 AFA_15730 PF00301 Rubredoxin AFA_15735 PF08543 Phosphomethylpyrimidine kinase AFA_15740 PF02581 Thiamine monophosphate synthase/TENI AFA_15745 PF00202 Aminotransferase class-III AFA_15750 PF00501 AMP-binding enzyme AFA_15750 PF13193 AMP-binding enzyme C-terminal domain AFA_15755 PF01047 MarR family AFA_15760 PF01960 ArgJ family AFA_15765 PF07043 AFA_15765 AFA_15770 PF05532 CsbD-like AFA_15775 PF00829 Ribosomal prokaryotic L21 protein AFA_15780 PF01016 Ribosomal L27 protein AFA_15785 PF01018 GTP1/OBG AFA_15785 PF01926 50S ribosome-binding GTPase AFA_15790 PF00696 Amino acid kinase family AFA_15790 PF01472 PUA domain AFA_15795 PF01266 FAD dependent oxidoreductase AFA_15800 PF00486 Transcriptional regulatory protein, C terminal AFA_15805 PF01381 Helix-turn-helix AFA_15810 PF01381 Helix-turn-helix AFA_15815 PF01964 ThiC family AFA_15815 PF13667 ThiC-associated domain AFA_15820 PF00691 OmpA family AFA_15820 PF13488 AFA_15820 AFA_15825 PF03401 Tripartite tricarboxylate transporter family receptor AFA_15830 PF00005 ABC transporter AFA_15835 PF00528 Binding-protein-dependent transport system inner membrane component AFA_15840 PF00528 Binding-protein-dependent transport system inner membrane component AFA_15845 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_15850 PF00005 ABC transporter AFA_15855 PF02687 AFA_15855 AFA_15860 PF00730 HhH-GPD superfamily base excision DNA repair protein AFA_15860 PF14815 NUDIX domain AFA_15865 PF01098 AFA_15865 AFA_15870 PF00905 Penicillin binding protein transpeptidase domain AFA_15870 PF03717 Penicillin-binding Protein dimerisation domain AFA_15875 PF04093 AFA_15875 AFA_15880 PF04085 rod shape-determining protein MreC AFA_15885 PF06723 MreB/Mbl protein AFA_15890 PF02686 Glu-tRNAGln amidotransferase C subunit AFA_15895 PF01425 Amidase AFA_15900 PF02637 GatB domain AFA_15900 PF02934 GatB/GatE catalytic domain AFA_15905 PF00156 Phosphoribosyl transferase domain AFA_15910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_15910 PF03466 LysR substrate binding domain AFA_15915 PF07681 AFA_15915 AFA_15920 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFA_15925 PF03372 Endonuclease/Exonuclease/phosphatase family AFA_15930 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_15935 PF00394 Multicopper oxidase AFA_15935 PF07732 Multicopper oxidase AFA_15940 PF01047 MarR family AFA_15945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_15945 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_15945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_15945 PF12806 AFA_15945 AFA_15950 PF07690 Major Facilitator Superfamily AFA_15955 PF13380 CoA binding domain AFA_15955 PF13549 ATP-grasp domain AFA_15955 PF13607 Succinyl-CoA ligase like flavodoxin domain AFA_15960 PF00378 Enoyl-CoA hydratase/isomerase family AFA_15965 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFA_15975 PF00158 Sigma-54 interaction domain AFA_15975 PF02954 Bacterial regulatory protein, Fis family AFA_15980 PF00027 Cyclic nucleotide-binding domain AFA_15980 PF13545 Crp-like helix-turn-helix domain AFA_15985 PF03781 Sulfatase-modifying factor enzyme 1 AFA_15990 PF12680 SnoaL-like domain AFA_15995 PF00440 Bacterial regulatory proteins, tetR family AFA_16000 PF01593 Flavin containing amine oxidoreductase AFA_16005 PF07103 AFA_16005 AFA_16010 PF02353 Mycolic acid cyclopropane synthetase AFA_16020 PF13347 MFS/sugar transport protein AFA_16025 PF12915 AFA_16025 AFA_16030 PF00106 short chain dehydrogenase AFA_16035 PF01370 NAD dependent epimerase/dehydratase family AFA_16035 PF08338 Domain of unknown function (DUF1731) AFA_16040 PF03616 AFA_16040 AFA_16045 PF00348 Polyprenyl synthetase AFA_16050 PF05673 Protein of unknown function (DUF815) AFA_16055 PF00293 NUDIX domain AFA_16055 PF02581 Thiamine monophosphate synthase/TENI AFA_16060 PF01564 Spermine/spermidine synthase AFA_16065 PF02321 Outer membrane efflux protein AFA_16070 PF00873 AcrB/AcrD/AcrF family AFA_16075 PF00873 AcrB/AcrD/AcrF family AFA_16080 PF13437 HlyD family secretion protein AFA_16080 PF13533 Biotin-lipoyl like AFA_16085 PF07072 Protein of unknown function (DUF1342) AFA_16090 PF01121 Dephospho-CoA kinase AFA_16100 PF00196 Bacterial regulatory proteins, luxR family AFA_16105 PF02569 Pantoate-beta-alanine ligase AFA_16110 PF02616 ScpA/B protein AFA_16115 PF11943 AFA_16115 AFA_16120 PF07690 Major Facilitator Superfamily AFA_16125 PF03483 B3/4 domain AFA_16130 PF00892 EamA-like transporter family AFA_16135 PF02311 AraC-like ligand binding domain AFA_16135 PF12833 Helix-turn-helix domain AFA_16140 PF13560 Helix-turn-helix domain AFA_16145 PF00809 Pterin binding enzyme AFA_16145 PF02310 B12 binding domain AFA_16145 PF02574 Homocysteine S-methyltransferase AFA_16145 PF02607 B12 binding domain AFA_16145 PF02965 Vitamin B12 dependent methionine synthase, activation domain AFA_16150 PF00593 TonB dependent receptor AFA_16150 PF07715 TonB-dependent Receptor Plug Domain AFA_16155 PF01497 Periplasmic binding protein AFA_16160 PF00593 TonB dependent receptor AFA_16160 PF07715 TonB-dependent Receptor Plug Domain AFA_16165 PF04773 FecR protein AFA_16165 PF16220 AFA_16165 AFA_16170 PF04542 Sigma-70 region 2 AFA_16170 PF08281 Sigma-70, region 4 AFA_16180 PF05690 Thiazole biosynthesis protein ThiG AFA_16185 PF08543 Phosphomethylpyrimidine kinase AFA_16190 PF01048 Phosphorylase superfamily AFA_16195 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AFA_16200 PF02321 Outer membrane efflux protein AFA_16205 PF01467 Cytidylyltransferase AFA_16215 PF03109 AFA_16215 AFA_16220 PF02036 SCP-2 sterol transfer family AFA_16225 PF04280 Tim44-like domain AFA_16230 PF01209 ubiE/COQ5 methyltransferase family AFA_16235 PF00072 Response regulator receiver domain AFA_16235 PF00486 Transcriptional regulatory protein, C terminal AFA_16240 PF00512 His Kinase A (phospho-acceptor) domain AFA_16240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_16240 PF11808 AFA_16240 AFA_16250 PF02682 Allophanate hydrolase subunit 1 AFA_16255 PF02626 Allophanate hydrolase subunit 2 AFA_16260 PF00291 Pyridoxal-phosphate dependent enzyme AFA_16260 PF00585 C-terminal regulatory domain of Threonine dehydratase AFA_16265 PF09335 AFA_16265 AFA_16270 PF01565 FAD binding domain AFA_16270 PF02754 AFA_16270 AFA_16270 PF02913 FAD linked oxidases, C-terminal domain AFA_16270 PF11880 AFA_16270 AFA_16270 PF12447 AFA_16270 AFA_16270 PF13183 4Fe-4S dicluster domain AFA_16275 PF13883 Pyridoxamine 5'-phosphate oxidase AFA_16280 PF00082 Subtilase family AFA_16280 PF03797 Autotransporter beta-domain AFA_16280 PF12951 AFA_16280 AFA_16285 PF00082 Subtilase family AFA_16285 PF03797 Autotransporter beta-domain AFA_16285 PF12951 AFA_16285 AFA_16290 PF00082 Subtilase family AFA_16290 PF03797 Autotransporter beta-domain AFA_16290 PF12951 AFA_16290 AFA_16295 PF00082 Subtilase family AFA_16295 PF03797 Autotransporter beta-domain AFA_16295 PF12951 AFA_16295 AFA_16300 PF00156 Phosphoribosyl transferase domain AFA_16305 PF00005 ABC transporter AFA_16305 PF00664 ABC transporter transmembrane region AFA_16310 PF00005 ABC transporter AFA_16310 PF00664 ABC transporter transmembrane region AFA_16315 PF08173 AFA_16315 AFA_16320 PF02322 AFA_16320 AFA_16325 PF01654 AFA_16325 AFA_16330 PF12802 MarR family AFA_16335 PF00571 CBS domain AFA_16335 PF01380 SIS domain AFA_16340 PF08282 haloacid dehalogenase-like hydrolase AFA_16345 PF06835 Lipopolysaccharide-assembly, LptC-related AFA_16350 PF03968 OstA-like protein AFA_16355 PF00005 ABC transporter AFA_16355 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_16360 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AFA_16365 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AFA_16370 PF02603 HPr Serine kinase N terminus AFA_16370 PF07475 HPr Serine kinase C-terminal domain AFA_16375 PF03668 AFA_16375 AFA_16380 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel AFA_16380 PF05036 Sporulation related domain AFA_16385 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFA_16390 PF02021 Uncharacterised protein family UPF0102 AFA_16395 PF13580 SIS domain AFA_16400 PF04972 BON domain AFA_16405 PF08534 Redoxin AFA_16410 PF00696 Amino acid kinase family AFA_16415 PF13419 Haloacid dehalogenase-like hydrolase AFA_16420 PF00899 ThiF family AFA_16425 PF03572 Peptidase family S41 AFA_16425 PF13180 PDZ domain AFA_16430 PF01551 Peptidase family M23 AFA_16435 PF00300 Histidine phosphatase superfamily (branch 1) AFA_16440 PF00581 Rhodanese-like domain AFA_16445 PF00462 Glutaredoxin AFA_16450 PF02556 Preprotein translocase subunit SecB AFA_16455 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AFA_16455 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AFA_16460 PF03401 Tripartite tricarboxylate transporter family receptor AFA_16465 PF00588 SpoU rRNA Methylase family AFA_16470 PF00156 Phosphoribosyl transferase domain AFA_16475 PF08241 Methyltransferase domain AFA_16480 PF00885 6,7-dimethyl-8-ribityllumazine synthase AFA_16485 PF00072 Response regulator receiver domain AFA_16485 PF02954 Bacterial regulatory protein, Fis family AFA_16490 PF00512 His Kinase A (phospho-acceptor) domain AFA_16490 PF00672 HAMP domain AFA_16490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_16495 PF14334 AFA_16495 AFA_16500 PF01189 NOL1/NOP2/sun family AFA_16505 PF00919 Uncharacterized protein family UPF0004 AFA_16505 PF01938 TRAM domain AFA_16505 PF04055 Radical SAM superfamily AFA_16510 PF00132 Bacterial transferase hexapeptide (six repeats) AFA_16515 PF16363 AFA_16515 AFA_16520 PF01177 Asp/Glu/Hydantoin racemase AFA_16525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_16525 PF03466 LysR substrate binding domain AFA_16530 PF03328 HpcH/HpaI aldolase/citrate lyase family AFA_16535 PF00005 ABC transporter AFA_16540 PF00528 Binding-protein-dependent transport system inner membrane component AFA_16545 PF13379 NMT1-like family AFA_16550 PF00535 Glycosyl transferase family 2 AFA_16555 PF00534 Glycosyl transferases group 1 AFA_16555 PF13439 Glycosyltransferase Family 4 AFA_16560 PF01943 AFA_16560 AFA_16565 PF02397 AFA_16565 AFA_16570 PF00534 Glycosyl transferases group 1 AFA_16570 PF13579 Glycosyl transferase 4-like domain AFA_16575 PF04932 AFA_16575 AFA_16580 PF04932 AFA_16580 AFA_16585 PF16363 AFA_16585 AFA_16590 PF00483 Nucleotidyl transferase AFA_16595 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AFA_16600 PF04321 RmlD substrate binding domain AFA_16605 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AFA_16610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFA_16610 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFA_16615 PF00231 ATP synthase AFA_16620 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFA_16620 PF00306 ATP synthase alpha/beta chain, C terminal domain AFA_16620 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFA_16625 PF00213 ATP synthase delta (OSCP) subunit AFA_16630 PF00430 ATP synthase B/B' CF(0) AFA_16635 PF00137 ATP synthase subunit C AFA_16640 PF00119 ATP synthase A chain AFA_16645 PF03899 AFA_16645 AFA_16650 PF00378 Enoyl-CoA hydratase/isomerase family AFA_16655 PF05299 M61 glycyl aminopeptidase AFA_16655 PF13180 PDZ domain AFA_16660 PF02152 Dihydroneopterin aldolase AFA_16665 PF01171 PP-loop family AFA_16670 PF02441 Flavoprotein AFA_16675 PF00462 Glutaredoxin AFA_16680 PF13847 Methyltransferase domain AFA_16685 PF00472 RF-1 domain AFA_16685 PF03462 PCRF domain AFA_16690 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AFA_16690 PF01488 Shikimate / quinate 5-dehydrogenase AFA_16690 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AFA_16700 PF00990 GGDEF domain AFA_16700 PF02743 Cache domain AFA_16705 PF10294 Putative methyltransferase AFA_16710 PF13649 Methyltransferase domain AFA_16715 PF00593 TonB dependent receptor AFA_16715 PF07660 Secretin and TonB N terminus short domain AFA_16715 PF07715 TonB-dependent Receptor Plug Domain AFA_16725 PF04773 FecR protein AFA_16725 PF16220 AFA_16725 AFA_16725 PF16344 AFA_16725 AFA_16730 PF04542 Sigma-70 region 2 AFA_16730 PF08281 Sigma-70, region 4 AFA_16735 PF00080 Copper/zinc superoxide dismutase (SODC) AFA_16740 PF16242 AFA_16740 AFA_16745 PF05145 AFA_16745 AFA_16750 PF01970 AFA_16750 AFA_16755 PF07331 AFA_16755 AFA_16760 PF03401 Tripartite tricarboxylate transporter family receptor AFA_16765 PF00512 His Kinase A (phospho-acceptor) domain AFA_16765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_16765 PF08521 AFA_16765 AFA_16770 PF00072 Response regulator receiver domain AFA_16770 PF00486 Transcriptional regulatory protein, C terminal AFA_16775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_16775 PF03466 LysR substrate binding domain AFA_16780 PF07690 Major Facilitator Superfamily AFA_16785 PF00795 Carbon-nitrogen hydrolase AFA_16790 PF13560 Helix-turn-helix domain AFA_16795 PF00593 TonB dependent receptor AFA_16795 PF07715 TonB-dependent Receptor Plug Domain AFA_16805 PF00005 ABC transporter AFA_16810 PF00528 Binding-protein-dependent transport system inner membrane component AFA_16815 PF02621 Menaquinone biosynthesis AFA_16820 PF00027 Cyclic nucleotide-binding domain AFA_16820 PF13545 Crp-like helix-turn-helix domain AFA_16825 PF01152 Bacterial-like globin AFA_16825 PF09313 Domain of unknown function (DUF1971) AFA_16830 PF00384 Molybdopterin oxidoreductase AFA_16830 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFA_16835 PF00384 Molybdopterin oxidoreductase AFA_16835 PF01568 Molydopterin dinucleotide binding domain AFA_16840 PF09163 Formate dehydrogenase N, transmembrane AFA_16840 PF13247 4Fe-4S dicluster domain AFA_16845 PF01292 Prokaryotic cytochrome b561 AFA_16850 PF04216 Protein involved in formate dehydrogenase formation AFA_16855 PF03841 L-seryl-tRNA selenium transferase AFA_16855 PF12390 AFA_16855 AFA_16860 PF00009 Elongation factor Tu GTP binding domain AFA_16860 PF03144 Elongation factor Tu domain 2 AFA_16860 PF09106 Elongation factor SelB, winged helix AFA_16860 PF09107 Elongation factor SelB, winged helix AFA_16870 PF01381 Helix-turn-helix AFA_16870 PF07883 Cupin domain AFA_16875 PF00596 Class II Aldolase and Adducin N-terminal domain AFA_16880 PF00043 Glutathione S-transferase, C-terminal domain AFA_16880 PF13417 Glutathione S-transferase, N-terminal domain AFA_16885 PF03401 Tripartite tricarboxylate transporter family receptor AFA_16890 PF00593 TonB dependent receptor AFA_16890 PF07715 TonB-dependent Receptor Plug Domain AFA_16900 PF00593 TonB dependent receptor AFA_16900 PF07715 TonB-dependent Receptor Plug Domain AFA_16905 PF00586 AIR synthase related protein, N-terminal domain AFA_16905 PF02769 AIR synthase related protein, C-terminal domain AFA_16915 PF12801 AFA_16915 AFA_16925 PF05048 Periplasmic copper-binding protein (NosD) AFA_16930 PF00005 ABC transporter AFA_16935 PF12679 AFA_16935 AFA_16940 PF05573 NosL AFA_16945 PF02424 ApbE family AFA_16950 PF00342 Phosphoglucose isomerase AFA_16960 PF01850 PIN domain AFA_16965 PF00884 Sulfatase AFA_16970 PF00106 short chain dehydrogenase AFA_16975 PF13641 Glycosyltransferase like family 2 AFA_16980 PF13524 Glycosyl transferases group 1 AFA_16985 PF13579 Glycosyl transferase 4-like domain AFA_16985 PF13692 Glycosyl transferases group 1 AFA_17005 PF00535 Glycosyl transferase family 2 AFA_17005 PF12996 AFA_17005 AFA_17005 PF13524 Glycosyl transferases group 1 AFA_17010 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFA_17010 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFA_17010 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFA_17015 PF02350 UDP-N-acetylglucosamine 2-epimerase AFA_17030 PF00005 ABC transporter AFA_17035 PF01061 AFA_17035 AFA_17040 PF02563 Polysaccharide biosynthesis/export protein AFA_17045 PF00155 Aminotransferase class I and II AFA_17050 PF00107 Zinc-binding dehydrogenase AFA_17050 PF00109 Beta-ketoacyl synthase, N-terminal domain AFA_17050 PF00550 Phosphopantetheine attachment site AFA_17050 PF00698 Acyl transferase domain AFA_17050 PF02801 Beta-ketoacyl synthase, C-terminal domain AFA_17050 PF08659 KR domain AFA_17050 PF13489 Methyltransferase domain AFA_17050 PF14765 Polyketide synthase dehydratase AFA_17050 PF16197 AFA_17050 AFA_17055 PF00860 Permease family AFA_17060 PF00892 EamA-like transporter family AFA_17065 PF00155 Aminotransferase class I and II AFA_17065 PF00392 Bacterial regulatory proteins, gntR family AFA_17070 PF00892 EamA-like transporter family AFA_17080 PF00108 Thiolase, N-terminal domain AFA_17080 PF02803 Thiolase, C-terminal domain AFA_17085 PF00378 Enoyl-CoA hydratase/isomerase family AFA_17085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFA_17085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFA_17090 PF02417 AFA_17090 AFA_17095 PF02417 AFA_17095 AFA_17100 PF00005 ABC transporter AFA_17105 PF02405 AFA_17105 AFA_17110 PF02470 AFA_17110 AFA_17115 PF04333 AFA_17115 AFA_17120 PF05494 Toluene tolerance, Ttg2 AFA_17125 PF00005 ABC transporter AFA_17130 PF01061 AFA_17130 AFA_17135 PF01722 BolA-like protein AFA_17140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFA_17145 PF01634 ATP phosphoribosyltransferase AFA_17150 PF00815 Histidinol dehydrogenase AFA_17155 PF00475 Imidazoleglycerol-phosphate dehydratase AFA_17160 PF00117 Glutamine amidotransferase class-I AFA_17165 PF00977 Histidine biosynthesis protein AFA_17170 PF00977 Histidine biosynthesis protein AFA_17175 PF01502 Phosphoribosyl-AMP cyclohydrolase AFA_17180 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AFA_17185 PF01230 HIT domain AFA_17190 PF02416 mttA/Hcf106 family AFA_17195 PF02416 mttA/Hcf106 family AFA_17200 PF00902 Sec-independent protein translocase protein (TatC) AFA_17205 PF13180 PDZ domain AFA_17205 PF13365 Trypsin-like peptidase domain AFA_17210 PF01784 NIF3 (NGG1p interacting factor 3) AFA_17215 PF01741 Large-conductance mechanosensitive channel, MscL AFA_17220 PF00355 Rieske [2Fe-2S] domain AFA_17225 PF00032 Cytochrome b(C-terminal)/b6/petD AFA_17225 PF00033 Cytochrome b(N-terminal)/b6/petB AFA_17230 PF02167 Cytochrome C1 family AFA_17235 PF13410 Glutathione S-transferase, C-terminal domain AFA_17235 PF13417 Glutathione S-transferase, N-terminal domain AFA_17240 PF04386 Stringent starvation protein B AFA_17245 PF00528 Binding-protein-dependent transport system inner membrane component AFA_17250 PF00528 Binding-protein-dependent transport system inner membrane component AFA_17255 PF13531 Bacterial extracellular solute-binding protein AFA_17275 PF00534 Glycosyl transferases group 1 AFA_17280 PF04828 Glutathione-dependent formaldehyde-activating enzyme AFA_17285 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFA_17285 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFA_17290 PF07978 NIPSNAP AFA_17295 PF06808 AFA_17295 AFA_17300 PF04290 AFA_17300 AFA_17305 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_17310 PF01370 NAD dependent epimerase/dehydratase family AFA_17315 PF01261 Xylose isomerase-like TIM barrel AFA_17320 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFA_17320 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFA_17325 PF00920 Dehydratase family AFA_17330 PF00392 Bacterial regulatory proteins, gntR family AFA_17330 PF07729 FCD domain AFA_17335 PF01037 AsnC family AFA_17335 PF13412 Winged helix-turn-helix DNA-binding AFA_17340 PF03301 Tryptophan 2,3-dioxygenase AFA_17345 PF07859 alpha/beta hydrolase fold AFA_17350 PF01042 Endoribonuclease L-PSP AFA_17355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_17355 PF03466 LysR substrate binding domain AFA_17360 PF02548 Ketopantoate hydroxymethyltransferase AFA_17365 PF00248 Aldo/keto reductase family AFA_17370 PF07690 Major Facilitator Superfamily AFA_17375 PF00330 Aconitase family (aconitate hydratase) AFA_17375 PF00694 Aconitase C-terminal domain AFA_17380 PF00990 GGDEF domain AFA_17380 PF02743 Cache domain AFA_17385 PF13649 Methyltransferase domain AFA_17390 PF05013 N-formylglutamate amidohydrolase AFA_17395 PF00795 Carbon-nitrogen hydrolase AFA_17400 PF13354 Beta-lactamase enzyme family AFA_17410 PF07969 Amidohydrolase family AFA_17415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_17415 PF03466 LysR substrate binding domain AFA_17420 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_17425 PF00857 Isochorismatase family AFA_17430 PF02678 Pirin AFA_17430 PF05726 Pirin C-terminal cupin domain AFA_17435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_17435 PF03466 LysR substrate binding domain AFA_17440 PF05532 CsbD-like AFA_17445 PF04972 BON domain AFA_17450 PF13738 Pyridine nucleotide-disulphide oxidoreductase AFA_17455 PF00158 Sigma-54 interaction domain AFA_17455 PF01590 GAF domain AFA_17455 PF02954 Bacterial regulatory protein, Fis family AFA_17460 PF07804 HipA-like C-terminal domain AFA_17460 PF13657 HipA N-terminal domain AFA_17475 PF00593 TonB dependent receptor AFA_17475 PF07660 Secretin and TonB N terminus short domain AFA_17475 PF07715 TonB-dependent Receptor Plug Domain AFA_17480 PF04773 FecR protein AFA_17480 PF16220 AFA_17480 AFA_17485 PF04542 Sigma-70 region 2 AFA_17485 PF08281 Sigma-70, region 4 AFA_17495 PF01380 SIS domain AFA_17495 PF13522 Glutamine amidotransferase domain AFA_17500 PF01037 AsnC family AFA_17500 PF13412 Winged helix-turn-helix DNA-binding AFA_17510 PF00534 Glycosyl transferases group 1 AFA_17510 PF13439 Glycosyltransferase Family 4 AFA_17515 PF00132 Bacterial transferase hexapeptide (six repeats) AFA_17515 PF12804 MobA-like NTP transferase domain AFA_17525 PF00293 NUDIX domain AFA_17525 PF15916 AFA_17525 AFA_17530 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AFA_17530 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AFA_17530 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_17535 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFA_17540 PF11174 AFA_17540 AFA_17545 PF00510 Cytochrome c oxidase subunit III AFA_17550 PF11137 AFA_17550 AFA_17555 PF02104 AFA_17555 AFA_17565 PF02628 AFA_17565 AFA_17570 PF01040 UbiA prenyltransferase family AFA_17575 PF12833 Helix-turn-helix domain AFA_17595 PF00593 TonB dependent receptor AFA_17595 PF07715 TonB-dependent Receptor Plug Domain AFA_17600 PF00140 Sigma-70 factor, region 1 AFA_17600 PF04542 Sigma-70 region 2 AFA_17600 PF04545 Sigma-70, region 4 AFA_17605 PF00756 Putative esterase AFA_17610 PF00107 Zinc-binding dehydrogenase AFA_17610 PF08240 Alcohol dehydrogenase GroES-like domain AFA_17615 PF13091 PLD-like domain AFA_17620 PF03372 Endonuclease/Exonuclease/phosphatase family AFA_17625 PF00152 tRNA synthetases class II (D, K and N) AFA_17625 PF01336 OB-fold nucleic acid binding domain AFA_17625 PF02938 GAD domain AFA_17630 PF04367 AFA_17630 AFA_17635 PF09723 AFA_17635 AFA_17640 PF07399 AFA_17640 AFA_17645 PF01040 UbiA prenyltransferase family AFA_17650 PF00155 Aminotransferase class I and II AFA_17655 PF05962 HutD AFA_17660 PF01979 Amidohydrolase family AFA_17665 PF01979 Amidohydrolase family AFA_17670 PF01381 Helix-turn-helix AFA_17680 PF00221 Aromatic amino acid lyase AFA_17685 PF01175 Urocanase AFA_17685 PF17391 AFA_17685 AFA_17685 PF17392 AFA_17685 AFA_17690 PF00392 Bacterial regulatory proteins, gntR family AFA_17690 PF07702 UTRA domain AFA_17695 PF12833 Helix-turn-helix domain AFA_17700 PF13302 Acetyltransferase (GNAT) domain AFA_17705 PF11158 AFA_17705 AFA_17710 PF13411 MerR HTH family regulatory protein AFA_17715 PF07690 Major Facilitator Superfamily AFA_17720 PF00583 Acetyltransferase (GNAT) family AFA_17725 PF00296 Luciferase-like monooxygenase AFA_17730 PF00043 Glutathione S-transferase, C-terminal domain AFA_17730 PF02798 Glutathione S-transferase, N-terminal domain AFA_17735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_17735 PF03466 LysR substrate binding domain AFA_17740 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_17740 PF00175 Oxidoreductase NAD-binding domain AFA_17740 PF00970 Oxidoreductase FAD-binding domain AFA_17745 PF00355 Rieske [2Fe-2S] domain AFA_17750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_17750 PF03466 LysR substrate binding domain AFA_17755 PF00155 Aminotransferase class I and II AFA_17760 PF13350 Tyrosine phosphatase family AFA_17765 PF12706 Beta-lactamase superfamily domain AFA_17775 PF01784 NIF3 (NGG1p interacting factor 3) AFA_17785 PF02423 Ornithine cyclodeaminase/mu-crystallin family AFA_17790 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_17800 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_17810 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_17810 PF00175 Oxidoreductase NAD-binding domain AFA_17810 PF00970 Oxidoreductase FAD-binding domain AFA_17815 PF03928 Domain of unknown function (DUF336) AFA_17820 PF00171 Aldehyde dehydrogenase family AFA_17825 PF14518 Iron-containing redox enzyme AFA_17830 PF01019 Gamma-glutamyltranspeptidase AFA_17840 PF01925 AFA_17840 AFA_17845 PF00392 Bacterial regulatory proteins, gntR family AFA_17845 PF07729 FCD domain AFA_17850 PF00440 Bacterial regulatory proteins, tetR family AFA_17855 PF07690 Major Facilitator Superfamily AFA_17860 PF00210 Ferritin-like domain AFA_17870 PF07690 Major Facilitator Superfamily AFA_17875 PF00436 Single-strand binding protein family AFA_17880 PF07690 Major Facilitator Superfamily AFA_17890 PF01966 HD domain AFA_17890 PF13286 Phosphohydrolase-associated domain AFA_17895 PF01761 3-dehydroquinate synthase AFA_17900 PF01202 Shikimate kinase AFA_17905 PF00905 Penicillin binding protein transpeptidase domain AFA_17905 PF00912 Transglycosylase AFA_17905 PF17092 AFA_17905 AFA_17910 PF13627 AFA_17910 AFA_17915 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFA_17915 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFA_17920 PF00563 EAL domain AFA_17920 PF00990 GGDEF domain AFA_17925 PF01578 AFA_17925 AFA_17930 PF05140 AFA_17930 AFA_17935 PF00034 Cytochrome c AFA_17940 PF01926 50S ribosome-binding GTPase AFA_17945 PF00490 Delta-aminolevulinic acid dehydratase AFA_17950 PF02683 AFA_17950 AFA_17950 PF11412 Disulphide bond corrector protein DsbC AFA_17950 PF13899 Thioredoxin-like AFA_17955 PF03091 CutA1 divalent ion tolerance protein AFA_17960 PF12833 Helix-turn-helix domain AFA_17960 PF14525 AFA_17960 AFA_17965 PF01613 Flavin reductase like domain AFA_17970 PF00296 Luciferase-like monooxygenase AFA_17975 PF01196 Ribosomal protein L17 AFA_17980 PF01000 RNA polymerase Rpb3/RpoA insert domain AFA_17980 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AFA_17980 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AFA_17985 PF00163 Ribosomal protein S4/S9 N-terminal domain AFA_17985 PF01479 S4 domain AFA_17990 PF00411 Ribosomal protein S11 AFA_17995 PF00416 Ribosomal protein S13/S18 AFA_18000 PF00444 Ribosomal protein L36 AFA_18005 PF01176 Translation initiation factor 1A / IF-1 AFA_18010 PF00344 SecY translocase AFA_18015 PF00828 Ribosomal protein L18e/L15 AFA_18020 PF00327 Ribosomal protein L30p/L7e AFA_18025 PF00333 Ribosomal protein S5, N-terminal domain AFA_18025 PF03719 Ribosomal protein S5, C-terminal domain AFA_18030 PF00861 Ribosomal L18p/L5e family AFA_18035 PF00347 Ribosomal protein L6 AFA_18040 PF00410 Ribosomal protein S8 AFA_18045 PF00253 Ribosomal protein S14p/S29e AFA_18050 PF00281 Ribosomal protein L5 AFA_18050 PF00673 ribosomal L5P family C-terminus AFA_18055 PF17136 AFA_18055 AFA_18060 PF00238 Ribosomal protein L14p/L23e AFA_18065 PF00563 EAL domain AFA_18065 PF00990 GGDEF domain AFA_18065 PF16448 AFA_18065 AFA_18070 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP AFA_18075 PF03160 Calx-beta domain AFA_18075 PF13519 von Willebrand factor type A domain AFA_18080 PF00196 Bacterial regulatory proteins, luxR family AFA_18085 PF13437 HlyD family secretion protein AFA_18085 PF13533 Biotin-lipoyl like AFA_18090 PF00005 ABC transporter AFA_18090 PF00664 ABC transporter transmembrane region AFA_18100 PF02321 Outer membrane efflux protein AFA_18105 PF03895 YadA-like C-terminal region AFA_18105 PF05662 Coiled stalk of trimeric autotransporter adhesin AFA_18110 PF04185 Phosphoesterase family AFA_18110 PF05506 AFA_18110 AFA_18120 PF00528 Binding-protein-dependent transport system inner membrane component AFA_18125 PF00005 ABC transporter AFA_18130 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein AFA_18135 PF13242 HAD-hyrolase-like AFA_18135 PF13344 Haloacid dehalogenase-like hydrolase AFA_18140 PF01380 SIS domain AFA_18140 PF01418 Helix-turn-helix domain, rpiR family AFA_18145 PF00171 Aldehyde dehydrogenase family AFA_18150 PF00440 Bacterial regulatory proteins, tetR family AFA_18155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_18155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_18155 PF09317 AFA_18155 AFA_18160 PF00108 Thiolase, N-terminal domain AFA_18160 PF02803 Thiolase, C-terminal domain AFA_18165 PF00378 Enoyl-CoA hydratase/isomerase family AFA_18165 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFA_18165 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFA_18170 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AFA_18175 PF14539 Domain of unknown function (DUF4442) AFA_18180 PF16036 AFA_18180 AFA_18185 PF00501 AMP-binding enzyme AFA_18185 PF13193 AMP-binding enzyme C-terminal domain AFA_18190 PF00175 Oxidoreductase NAD-binding domain AFA_18190 PF00258 Flavodoxin AFA_18190 PF00667 FAD binding domain AFA_18195 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFA_18195 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFA_18200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFA_18200 PF10414 Sirohaem synthase dimerisation region AFA_18200 PF13241 Putative NAD(P)-binding AFA_18200 PF14824 Sirohaem biosynthesis protein central AFA_18205 PF00528 Binding-protein-dependent transport system inner membrane component AFA_18210 PF13379 NMT1-like family AFA_18215 PF00005 ABC transporter AFA_18225 PF02627 Carboxymuconolactone decarboxylase family AFA_18230 PF12833 Helix-turn-helix domain AFA_18230 PF12852 Cupin AFA_18235 PF00366 Ribosomal protein S17 AFA_18240 PF00831 Ribosomal L29 protein AFA_18245 PF00252 Ribosomal protein L16p/L10e AFA_18250 PF00189 Ribosomal protein S3, C-terminal domain AFA_18250 PF07650 KH domain AFA_18255 PF00237 Ribosomal protein L22p/L17e AFA_18260 PF00203 Ribosomal protein S19 AFA_18265 PF00181 Ribosomal Proteins L2, RNA binding domain AFA_18265 PF03947 Ribosomal Proteins L2, C-terminal domain AFA_18270 PF00276 Ribosomal protein L23 AFA_18275 PF00573 Ribosomal protein L4/L1 family AFA_18280 PF00297 Ribosomal protein L3 AFA_18285 PF00005 ABC transporter AFA_18290 PF00528 Binding-protein-dependent transport system inner membrane component AFA_18290 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AFA_18295 PF00338 Ribosomal protein S10p/S20e AFA_18300 PF00009 Elongation factor Tu GTP binding domain AFA_18300 PF03143 Elongation factor Tu C-terminal domain AFA_18300 PF03144 Elongation factor Tu domain 2 AFA_18305 PF00009 Elongation factor Tu GTP binding domain AFA_18305 PF00679 Elongation factor G C-terminus AFA_18305 PF03144 Elongation factor Tu domain 2 AFA_18305 PF03764 Elongation factor G, domain IV AFA_18305 PF14492 Elongation Factor G, domain II AFA_18310 PF00177 Ribosomal protein S7p/S5e AFA_18315 PF00164 Ribosomal protein S12/S23 AFA_18320 PF00072 Response regulator receiver domain AFA_18320 PF00486 Transcriptional regulatory protein, C terminal AFA_18325 PF01476 LysM domain AFA_18325 PF04773 FecR protein AFA_18330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_18330 PF05226 AFA_18330 AFA_18335 PF02311 AraC-like ligand binding domain AFA_18335 PF12833 Helix-turn-helix domain AFA_18340 PF01810 AFA_18340 AFA_18345 PF00127 Copper binding proteins, plastocyanin/azurin family AFA_18350 PF00623 RNA polymerase Rpb1, domain 2 AFA_18350 PF04983 RNA polymerase Rpb1, domain 3 AFA_18350 PF04997 RNA polymerase Rpb1, domain 1 AFA_18350 PF04998 RNA polymerase Rpb1, domain 5 AFA_18350 PF05000 RNA polymerase Rpb1, domain 4 AFA_18355 PF00562 RNA polymerase Rpb2, domain 6 AFA_18355 PF04560 RNA polymerase Rpb2, domain 7 AFA_18355 PF04561 RNA polymerase Rpb2, domain 2 AFA_18355 PF04563 RNA polymerase beta subunit AFA_18355 PF04565 RNA polymerase Rpb2, domain 3 AFA_18355 PF10385 RNA polymerase beta subunit external 1 domain AFA_18360 PF00542 Ribosomal protein L7/L12 C-terminal domain AFA_18360 PF16320 AFA_18360 AFA_18365 PF00466 Ribosomal protein L10 AFA_18370 PF00687 Ribosomal protein L1p/L10e family AFA_18375 PF00298 Ribosomal protein L11, RNA binding domain AFA_18375 PF03946 Ribosomal protein L11, N-terminal domain AFA_18380 PF00467 KOW motif AFA_18380 PF02357 Transcription termination factor nusG AFA_18385 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AFA_18395 PF00009 Elongation factor Tu GTP binding domain AFA_18395 PF03143 Elongation factor Tu C-terminal domain AFA_18395 PF03144 Elongation factor Tu domain 2 AFA_18415 PF02195 ParB-like nuclease domain AFA_18420 PF13614 AAA domain AFA_18425 PF02527 rRNA small subunit methyltransferase G AFA_18430 PF01134 Glucose inhibited division protein A AFA_18430 PF13932 GidA associated domain 3 AFA_18435 PF00155 Aminotransferase class I and II AFA_18440 PF00149 Calcineurin-like phosphoesterase AFA_18445 PF00990 GGDEF domain AFA_18445 PF11563 Protoglobin AFA_18450 PF02666 AFA_18450 AFA_18455 PF13387 AFA_18455 AFA_18460 PF00291 Pyridoxal-phosphate dependent enzyme AFA_18470 PF02567 Phenazine biosynthesis-like protein AFA_18480 PF04773 FecR protein AFA_18480 PF16220 AFA_18480 AFA_18485 PF03797 Autotransporter beta-domain AFA_18500 PF13310 AFA_18500 AFA_18505 PF01926 50S ribosome-binding GTPase AFA_18505 PF10396 GTP-binding protein TrmE N-terminus AFA_18505 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE AFA_18510 PF07883 Cupin domain AFA_18510 PF13560 Helix-turn-helix domain AFA_18515 PF01546 Peptidase family M20/M25/M40 AFA_18515 PF07687 Peptidase dimerisation domain AFA_18520 PF00291 Pyridoxal-phosphate dependent enzyme AFA_18525 PF02423 Ornithine cyclodeaminase/mu-crystallin family AFA_18530 PF03401 Tripartite tricarboxylate transporter family receptor AFA_18535 PF13458 Periplasmic binding protein AFA_18540 PF02653 AFA_18540 AFA_18545 PF02653 AFA_18545 AFA_18550 PF00005 ABC transporter AFA_18550 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_18555 PF00005 ABC transporter AFA_18560 PF12697 Alpha/beta hydrolase family AFA_18570 PF00857 Isochorismatase family AFA_18575 PF01494 FAD binding domain AFA_18580 PF09995 AFA_18580 AFA_18585 PF00440 Bacterial regulatory proteins, tetR family AFA_18590 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFA_18595 PF00199 Catalase AFA_18595 PF06628 Catalase-related immune-responsive AFA_18600 PF02096 60Kd inner membrane protein AFA_18600 PF14849 YidC periplasmic domain AFA_18605 PF01809 AFA_18605 AFA_18610 PF00825 Ribonuclease P AFA_18615 PF00468 Ribosomal protein L34