AFA_00005 SM00382 ATPases associated with a variety of cellular activities AFA_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AFA_00010 SM00480 DNA polymerase III beta subunit AFA_00015 SM00387 Histidine kinase-like ATPases AFA_00015 SM00433 TopoisomeraseII AFA_00020 SM00363 S4 RNA-binding domain AFA_00050 SM00849 Metallo-beta-lactamase superfamily AFA_00060 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_00060 SM00895 AFA_00060 AFA_00085 SM00881 CoA binding domain AFA_00095 SM01007 Class II Aldolase and Adducin N-terminal domain AFA_00120 SM00382 ATPases associated with a variety of cellular activities AFA_00140 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_00140 SM00866 AFA_00140 AFA_00160 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_00160 SM00895 AFA_00160 AFA_00180 SM00382 ATPases associated with a variety of cellular activities AFA_00200 SM00833 Cobalamin synthesis protein cobW C-terminal domain AFA_00205 SM00829 Enoylreductase AFA_00230 SM00346 helix_turn_helix isocitrate lyase regulation AFA_00245 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_00260 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_00335 SM00422 helix_turn_helix, mercury resistance AFA_00375 SM00903 Flavin reductase like domain AFA_00385 SM00342 helix_turn_helix, arabinose operon control protein AFA_00390 SM00903 Flavin reductase like domain AFA_00395 SM00382 ATPases associated with a variety of cellular activities AFA_00410 SM00382 ATPases associated with a variety of cellular activities AFA_00415 SM00382 ATPases associated with a variety of cellular activities AFA_00450 SM00965 Secretin and TonB N terminus short domain AFA_00465 SM00530 Helix-turn-helix XRE-family like proteins AFA_00485 SM00382 ATPases associated with a variety of cellular activities AFA_00485 SM00930 AFA_00485 AFA_00550 SM00342 helix_turn_helix, arabinose operon control protein AFA_00610 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AFA_00645 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFA_00645 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AFA_00645 SM00493 AFA_00645 AFA_00670 SM00878 Biotin carboxylase C-terminal domain AFA_00670 SM01209 AFA_00670 AFA_00695 SM00422 helix_turn_helix, mercury resistance AFA_00700 SM00849 Metallo-beta-lactamase superfamily AFA_00720 SM00836 DALR anticodon binding domain AFA_00720 SM01016 Arginyl tRNA synthetase N terminal dom AFA_00750 SM00917 LeuA allosteric (dimerisation) domain AFA_00840 SM00487 DEAD-like helicases superfamily AFA_00840 SM00490 helicase superfamily c-terminal domain AFA_00920 SM00382 ATPases associated with a variety of cellular activities AFA_00980 SM00248 ankyrin repeats AFA_00985 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_00985 SM00895 AFA_00985 AFA_01010 SM00052 Putative diguanylate phosphodiesterase AFA_01010 SM00062 Bacterial periplasmic substrate-binding proteins AFA_01010 SM00267 diguanylate cyclase AFA_01040 SM00870 AFA_01040 AFA_01055 SM00062 Bacterial periplasmic substrate-binding proteins AFA_01060 SM00382 ATPases associated with a variety of cellular activities AFA_01065 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFA_01080 SM00100 Cyclic nucleotide-monophosphate binding domain AFA_01090 SM00382 ATPases associated with a variety of cellular activities AFA_01110 SM00382 ATPases associated with a variety of cellular activities AFA_01120 SM00062 Bacterial periplasmic substrate-binding proteins AFA_01200 SM00357 Cold shock protein domain AFA_01225 SM00936 Penicillin-binding protein 5, C-terminal domain AFA_01250 SM00729 Elongator protein 3, MiaB family, Radical SAM AFA_01260 SM00986 Uracil DNA glycosylase superfamily AFA_01260 SM00987 UreE urease accessory protein, C-terminal domain AFA_01295 SM00100 Cyclic nucleotide-monophosphate binding domain AFA_01295 SM00419 helix_turn_helix, cAMP Regulatory protein AFA_01370 SM00052 Putative diguanylate phosphodiesterase AFA_01370 SM00267 diguanylate cyclase AFA_01385 SM00925 MltA specific insert domain AFA_01400 SM00052 Putative diguanylate phosphodiesterase AFA_01400 SM00862 Transcriptional regulatory protein, C terminal AFA_01405 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFA_01405 SM01049 AFA_01405 AFA_01415 SM00822 AFA_01415 AFA_01440 SM00823 Phosphopantetheine attachment site AFA_01460 SM00382 ATPases associated with a variety of cellular activities AFA_01465 SM00382 ATPases associated with a variety of cellular activities AFA_01485 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_01500 SM00382 ATPases associated with a variety of cellular activities AFA_01530 SM00382 ATPases associated with a variety of cellular activities AFA_01545 SM00490 helicase superfamily c-terminal domain AFA_01570 SM01091 Transporter associated domain AFA_01625 SM00903 Flavin reductase like domain AFA_01650 SM00382 ATPases associated with a variety of cellular activities AFA_01665 SM00062 Bacterial periplasmic substrate-binding proteins AFA_01665 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AFA_01670 SM00382 ATPases associated with a variety of cellular activities AFA_01685 SM01130 AFA_01685 AFA_01730 SM00342 helix_turn_helix, arabinose operon control protein AFA_01745 SM00487 DEAD-like helicases superfamily AFA_01745 SM00490 helicase superfamily c-terminal domain AFA_01825 SM00421 helix_turn_helix, Lux Regulon AFA_01875 SM00342 helix_turn_helix, arabinose operon control protein AFA_01875 SM00448 cheY-homologous receiver domain AFA_01885 SM00862 Transcriptional regulatory protein, C terminal AFA_01950 SM00382 ATPases associated with a variety of cellular activities AFA_01950 SM01086 C-terminal, D2-small domain, of ClpB protein AFA_01970 SM00833 Cobalamin synthesis protein cobW C-terminal domain AFA_01980 SM00382 ATPases associated with a variety of cellular activities AFA_02025 SM00996 S-adenosyl-L-homocysteine hydrolase AFA_02025 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AFA_02110 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_02110 SM00895 AFA_02110 AFA_02120 SM00346 helix_turn_helix isocitrate lyase regulation AFA_02165 SM00487 DEAD-like helicases superfamily AFA_02195 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_02220 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_02220 SM00895 AFA_02220 AFA_02235 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_02235 SM00866 AFA_02235 AFA_02240 SM00344 helix_turn_helix ASNC type AFA_02260 SM00420 helix_turn_helix, Deoxyribose operon repressor AFA_02260 SM01134 AFA_02260 AFA_02265 SM00382 ATPases associated with a variety of cellular activities AFA_02320 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFA_02330 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AFA_02335 SM00363 S4 RNA-binding domain AFA_02370 SM00342 helix_turn_helix, arabinose operon control protein AFA_02390 SM00387 Histidine kinase-like ATPases AFA_02400 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AFA_02410 SM00644 AFA_02410 AFA_02425 SM00382 ATPases associated with a variety of cellular activities AFA_02425 SM00962 SRP54-type protein, GTPase domain AFA_02425 SM00963 SRP54-type protein, helical bundle domain AFA_02435 SM00257 Lysin motif AFA_02480 SM00530 Helix-turn-helix XRE-family like proteins AFA_02500 SM00342 helix_turn_helix, arabinose operon control protein AFA_02500 SM00448 cheY-homologous receiver domain AFA_02515 SM01007 Class II Aldolase and Adducin N-terminal domain AFA_02690 SM01007 Class II Aldolase and Adducin N-terminal domain AFA_02715 SM00984 UDP binding domain AFA_02780 SM00849 Metallo-beta-lactamase superfamily AFA_02785 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFA_02785 SM01232 AFA_02785 AFA_02790 SM00028 Tetratricopeptide repeats AFA_02810 SM01400 AFA_02810 AFA_02850 SM00342 helix_turn_helix, arabinose operon control protein AFA_02860 SM00382 ATPases associated with a variety of cellular activities AFA_02870 SM00947 Carbonic anhydrase AFA_02885 SM00382 ATPases associated with a variety of cellular activities AFA_02925 SM00028 Tetratricopeptide repeats AFA_02935 SM00822 AFA_02935 AFA_02940 SM00342 helix_turn_helix, arabinose operon control protein AFA_02970 SM00382 ATPases associated with a variety of cellular activities AFA_02975 SM00382 ATPases associated with a variety of cellular activities AFA_03040 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFA_03040 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFA_03045 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFA_03060 SM00729 Elongator protein 3, MiaB family, Radical SAM AFA_03070 SM00852 Probable molybdopterin binding domain AFA_03075 SM00852 Probable molybdopterin binding domain AFA_03095 SM00421 helix_turn_helix, Lux Regulon AFA_03095 SM00448 cheY-homologous receiver domain AFA_03100 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFA_03100 SM00091 PAS domain AFA_03100 SM00387 Histidine kinase-like ATPases AFA_03100 SM00388 His Kinase A (phosphoacceptor) domain AFA_03135 SM00729 Elongator protein 3, MiaB family, Radical SAM AFA_03135 SM00876 Biotin and Thiamin Synthesis associated domain AFA_03195 SM00052 Putative diguanylate phosphodiesterase AFA_03195 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFA_03195 SM00091 PAS domain AFA_03195 SM00267 diguanylate cyclase AFA_03205 SM01091 Transporter associated domain AFA_03220 SM00729 Elongator protein 3, MiaB family, Radical SAM AFA_03245 SM01323 AFA_03245 AFA_03365 SM00919 Malic enzyme, NAD binding domain AFA_03365 SM01274 AFA_03365 AFA_03385 SM00861 Transketolase, pyrimidine binding domain AFA_03390 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFA_03420 SM00852 Probable molybdopterin binding domain AFA_03435 SM01001 AIR carboxylase AFA_03490 SM00903 Flavin reductase like domain AFA_03520 SM00382 ATPases associated with a variety of cellular activities AFA_03540 SM00382 ATPases associated with a variety of cellular activities AFA_03590 SM00116 Domain in cystathionine beta-synthase and other proteins. AFA_03600 SM00341 Helicase and RNase D C-terminal AFA_03600 SM00487 DEAD-like helicases superfamily AFA_03600 SM00490 helicase superfamily c-terminal domain AFA_03600 SM00956 AFA_03600 AFA_03620 SM00382 ATPases associated with a variety of cellular activities AFA_03690 SM00842 Cell division protein FtsA AFA_03695 SM00864 Tubulin/FtsZ family, GTPase domain AFA_03695 SM00865 Tubulin/FtsZ family, C-terminal domain AFA_03715 SM00957 SecA DEAD-like domain AFA_03715 SM00958 SecA preprotein cross-linking domain AFA_03725 SM00116 Domain in cystathionine beta-synthase and other proteins. AFA_03725 SM00924 MgtE intracellular N domain AFA_03765 SM00382 ATPases associated with a variety of cellular activities AFA_03765 SM00930 AFA_03765 AFA_03780 SM00062 Bacterial periplasmic substrate-binding proteins AFA_03780 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AFA_03790 SM00382 ATPases associated with a variety of cellular activities AFA_03820 SM00650 Ribosomal RNA adenine dimethylases AFA_03840 SM00563 Phosphate acyltransferases AFA_03850 SM00836 DALR anticodon binding domain AFA_03930 SM00853 MutL C terminal dimerisation domain AFA_03930 SM01340 AFA_03930 AFA_03960 SM00646 AFA_03960 AFA_03980 SM00919 Malic enzyme, NAD binding domain AFA_03980 SM01274 AFA_03980 AFA_03995 SM01130 AFA_03995 AFA_04000 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_04000 SM00895 AFA_04000 AFA_04070 SM00382 ATPases associated with a variety of cellular activities AFA_04095 SM00382 ATPases associated with a variety of cellular activities AFA_04105 SM00493 AFA_04105 AFA_04115 SM00382 ATPases associated with a variety of cellular activities AFA_04130 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AFA_04135 SM00851 MGS-like domain AFA_04135 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFA_04145 SM00822 AFA_04145 AFA_04150 SM00855 Phosphoglycerate mutase family AFA_04165 SM01103 AFA_04165 AFA_04175 SM00382 ATPases associated with a variety of cellular activities AFA_04220 SM00382 ATPases associated with a variety of cellular activities AFA_04240 SM00448 cheY-homologous receiver domain AFA_04240 SM00862 Transcriptional regulatory protein, C terminal AFA_04245 SM00387 Histidine kinase-like ATPases AFA_04255 SM00062 Bacterial periplasmic substrate-binding proteins AFA_04320 SM00155 Phospholipase D. Active site motifs. AFA_04345 SM01130 AFA_04345 AFA_04390 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AFA_04395 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AFA_04395 SM00534 ATPase domain of DNA mismatch repair MUTS family AFA_04415 SM00382 ATPases associated with a variety of cellular activities AFA_04430 SM00382 ATPases associated with a variety of cellular activities AFA_04470 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AFA_04515 SM00346 helix_turn_helix isocitrate lyase regulation AFA_04530 SM01091 Transporter associated domain AFA_04550 SM00028 Tetratricopeptide repeats AFA_04555 SM00840 AFA_04555 AFA_04560 SM00478 endonuclease III AFA_04590 SM00244 prohibitin homologues AFA_04600 SM00342 helix_turn_helix, arabinose operon control protein AFA_04635 SM00382 ATPases associated with a variety of cellular activities AFA_04640 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AFA_04640 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AFA_04745 SM00382 ATPases associated with a variety of cellular activities AFA_04755 SM00382 ATPases associated with a variety of cellular activities AFA_04770 SM00841 Elongation factor P, C-terminal AFA_04770 SM01185 AFA_04770 AFA_04825 SM00091 PAS domain AFA_04825 SM00382 ATPases associated with a variety of cellular activities AFA_04835 SM00530 Helix-turn-helix XRE-family like proteins AFA_04845 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_04845 SM00866 AFA_04845 AFA_04880 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_04880 SM00895 AFA_04880 AFA_04890 SM00919 Malic enzyme, NAD binding domain AFA_04890 SM01274 AFA_04890 AFA_04895 SM00861 Transketolase, pyrimidine binding domain AFA_04930 SM00316 Ribosomal protein S1-like RNA-binding domain AFA_04930 SM00732 Likely ribonuclease with RNase H fold. AFA_04935 SM00487 DEAD-like helicases superfamily AFA_04935 SM00491 AFA_04935 AFA_04980 SM00363 S4 RNA-binding domain AFA_04995 SM00822 AFA_04995 AFA_05090 SM00363 S4 RNA-binding domain AFA_05100 SM00316 Ribosomal protein S1-like RNA-binding domain AFA_05120 SM00838 Elongation factor G C-terminus AFA_05145 SM00062 Bacterial periplasmic substrate-binding proteins AFA_05155 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AFA_05155 SM00474 3'-5' exonuclease AFA_05155 SM00475 5'-3' exonuclease AFA_05155 SM00479 AFA_05155 AFA_05155 SM00482 DNA polymerase A domain AFA_05175 SM00450 Rhodanese Homology Domain AFA_05190 SM00861 Transketolase, pyrimidine binding domain AFA_05220 SM00382 ATPases associated with a variety of cellular activities AFA_05235 SM00670 Large family of predicted nucleotide-binding domains AFA_05290 SM01005 Alanine racemase, C-terminal domain AFA_05295 SM00822 AFA_05295 AFA_05300 SM00382 ATPases associated with a variety of cellular activities AFA_05320 SM00382 ATPases associated with a variety of cellular activities AFA_05350 SM00052 Putative diguanylate phosphodiesterase AFA_05365 SM00382 ATPases associated with a variety of cellular activities AFA_05365 SM00487 DEAD-like helicases superfamily AFA_05365 SM00490 helicase superfamily c-terminal domain AFA_05365 SM00847 Helicase associated domain (HA2) Add an annotation AFA_05370 SM00481 DNA polymerase alpha chain like domain AFA_05420 SM00382 ATPases associated with a variety of cellular activities AFA_05435 SM00316 Ribosomal protein S1-like RNA-binding domain AFA_05490 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_05490 SM00895 AFA_05490 AFA_05665 SM00849 Metallo-beta-lactamase superfamily AFA_05670 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFA_05685 SM00422 helix_turn_helix, mercury resistance AFA_05750 SM00073 Histidine Phosphotransfer domain AFA_05750 SM00260 Two component signalling adaptor domain AFA_05750 SM00387 Histidine kinase-like ATPases AFA_05750 SM01231 AFA_05750 AFA_05755 SM00260 Two component signalling adaptor domain AFA_05760 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFA_05760 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFA_05765 SM00138 Methyltransferase, chemotaxis proteins AFA_05770 SM00448 cheY-homologous receiver domain AFA_05775 SM00448 cheY-homologous receiver domain AFA_05795 SM00382 ATPases associated with a variety of cellular activities AFA_05795 SM00962 SRP54-type protein, GTPase domain AFA_05805 SM00530 Helix-turn-helix XRE-family like proteins AFA_05820 SM00858 AFA_05820 AFA_05865 SM00047 Lysozyme subfamily 2 AFA_05880 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFA_05880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFA_05890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFA_05890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFA_05895 SM00116 Domain in cystathionine beta-synthase and other proteins. AFA_05900 SM00479 AFA_05900 AFA_05950 SM00382 ATPases associated with a variety of cellular activities AFA_06050 SM00382 ATPases associated with a variety of cellular activities AFA_06085 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFA_06090 SM00091 PAS domain AFA_06090 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFA_06090 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFA_06150 SM00965 Secretin and TonB N terminus short domain AFA_06255 SM00357 Cold shock protein domain AFA_06280 SM00220 Serine/Threonine protein kinases, catalytic domain AFA_06315 SM00530 Helix-turn-helix XRE-family like proteins AFA_06375 SM00387 Histidine kinase-like ATPases AFA_06375 SM00388 His Kinase A (phosphoacceptor) domain AFA_06380 SM00448 cheY-homologous receiver domain AFA_06380 SM00862 Transcriptional regulatory protein, C terminal AFA_06410 SM00965 Secretin and TonB N terminus short domain AFA_06500 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_06515 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_06515 SM00895 AFA_06515 AFA_06525 SM00342 helix_turn_helix, arabinose operon control protein AFA_06610 SM00530 Helix-turn-helix XRE-family like proteins AFA_06615 SM00448 cheY-homologous receiver domain AFA_06615 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFA_06620 SM00091 PAS domain AFA_06620 SM00387 Histidine kinase-like ATPases AFA_06620 SM00388 His Kinase A (phosphoacceptor) domain AFA_06620 SM00448 cheY-homologous receiver domain AFA_06625 SM00116 Domain in cystathionine beta-synthase and other proteins. AFA_06625 SM00924 MgtE intracellular N domain AFA_06930 SM00635 Bacterial Ig-like domain 2 AFA_07205 SM00479 AFA_07205 AFA_07210 SM00267 diguanylate cyclase AFA_07225 SM00344 helix_turn_helix ASNC type AFA_07265 SM00382 ATPases associated with a variety of cellular activities AFA_07285 SM00354 helix_turn _helix lactose operon repressor AFA_07315 SM00387 Histidine kinase-like ATPases AFA_07315 SM00388 His Kinase A (phosphoacceptor) domain AFA_07320 SM00448 cheY-homologous receiver domain AFA_07320 SM00862 Transcriptional regulatory protein, C terminal AFA_07410 SM00357 Cold shock protein domain AFA_07420 SM00382 ATPases associated with a variety of cellular activities AFA_07420 SM01086 C-terminal, D2-small domain, of ClpB protein AFA_07460 SM00382 ATPases associated with a variety of cellular activities AFA_07465 SM00382 ATPases associated with a variety of cellular activities AFA_07520 SM00904 Riboflavin kinase AFA_07565 SM00382 ATPases associated with a variety of cellular activities AFA_07590 SM00342 helix_turn_helix, arabinose operon control protein AFA_07620 SM00477 DNA/RNA non-specific endonuclease AFA_07620 SM00892 DNA/RNA non-specific endonuclease AFA_07645 SM00422 helix_turn_helix, mercury resistance AFA_07680 SM00382 ATPases associated with a variety of cellular activities AFA_07680 SM00994 ClpX C4-type zinc finger AFA_07680 SM01086 C-terminal, D2-small domain, of ClpB protein AFA_07685 SM00382 ATPases associated with a variety of cellular activities AFA_07685 SM00464 Found in ATP-dependent protease La (LON) AFA_07705 SM00487 DEAD-like helicases superfamily AFA_07705 SM00490 helicase superfamily c-terminal domain AFA_07710 SM00226 Low molecular weight phosphatase family AFA_07760 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFA_07800 SM00382 ATPases associated with a variety of cellular activities AFA_07810 SM00849 Metallo-beta-lactamase superfamily AFA_07820 SM00481 DNA polymerase alpha chain like domain AFA_07830 SM01211 AFA_07830 AFA_07835 SM00116 Domain in cystathionine beta-synthase and other proteins. AFA_07835 SM01240 AFA_07835 AFA_07910 SM00226 Low molecular weight phosphatase family AFA_07920 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFA_07925 SM00857 Resolvase, N terminal domain AFA_08010 SM00833 Cobalamin synthesis protein cobW C-terminal domain AFA_08020 SM01234 AFA_08020 AFA_08080 SM00342 helix_turn_helix, arabinose operon control protein AFA_08150 SM00342 helix_turn_helix, arabinose operon control protein AFA_08165 SM00450 Rhodanese Homology Domain AFA_08170 SM00232 JAB/MPN domain AFA_08215 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFA_08230 SM00342 helix_turn_helix, arabinose operon control protein AFA_08235 SM00917 LeuA allosteric (dimerisation) domain AFA_08245 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AFA_08255 SM00882 Coenzyme A transferase AFA_08260 SM00882 Coenzyme A transferase AFA_08310 SM00421 helix_turn_helix, Lux Regulon AFA_08345 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_08370 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_08380 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_08385 SM00990 AFA_08385 AFA_08390 SM00488 AFA_08390 AFA_08390 SM00491 AFA_08390 AFA_08435 SM00344 helix_turn_helix ASNC type AFA_08470 SM00062 Bacterial periplasmic substrate-binding proteins AFA_08485 SM00382 ATPases associated with a variety of cellular activities AFA_08510 SM00382 ATPases associated with a variety of cellular activities AFA_08510 SM00989 AFA_08510 AFA_08600 SM00354 helix_turn _helix lactose operon repressor AFA_08630 SM00244 prohibitin homologues AFA_08670 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AFA_08720 SM00382 ATPases associated with a variety of cellular activities AFA_08740 SM00873 B3/4 domain AFA_08740 SM00874 tRNA synthetase B5 domain AFA_08740 SM00896 Ferredoxin-fold anticodon binding domain AFA_08745 SM00411 bacterial (prokaryotic) histone like domain AFA_08750 SM00422 helix_turn_helix, mercury resistance AFA_08765 SM00382 ATPases associated with a variety of cellular activities AFA_08780 SM00382 ATPases associated with a variety of cellular activities AFA_08805 SM00421 helix_turn_helix, Lux Regulon AFA_08860 SM00357 Cold shock protein domain AFA_08925 SM00382 ATPases associated with a variety of cellular activities AFA_08985 SM00829 Enoylreductase AFA_08990 SM00342 helix_turn_helix, arabinose operon control protein AFA_09005 SM00530 Helix-turn-helix XRE-family like proteins AFA_09050 SM00481 DNA polymerase alpha chain like domain AFA_09065 SM01144 AFA_09065 AFA_09155 SM00387 Histidine kinase-like ATPases AFA_09155 SM00388 His Kinase A (phosphoacceptor) domain AFA_09160 SM00382 ATPases associated with a variety of cellular activities AFA_09160 SM00448 cheY-homologous receiver domain AFA_09185 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFA_09205 SM00834 Putative regulatory protein AFA_09235 SM00342 helix_turn_helix, arabinose operon control protein AFA_09265 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_09300 SM00729 Elongator protein 3, MiaB family, Radical SAM AFA_09305 SM01230 AFA_09305 AFA_09330 SM00382 ATPases associated with a variety of cellular activities AFA_09355 SM00487 DEAD-like helicases superfamily AFA_09355 SM00490 helicase superfamily c-terminal domain AFA_09375 SM00382 ATPases associated with a variety of cellular activities AFA_09415 SM00382 ATPases associated with a variety of cellular activities AFA_09420 SM00382 ATPases associated with a variety of cellular activities AFA_09450 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFA_09485 SM00248 ankyrin repeats AFA_09670 SM00220 Serine/Threonine protein kinases, catalytic domain AFA_09720 SM00528 Domain in histone-like proteins of HNS family AFA_09745 SM00487 DEAD-like helicases superfamily AFA_09750 SM00487 DEAD-like helicases superfamily AFA_09820 SM00530 Helix-turn-helix XRE-family like proteins AFA_09830 SM00487 DEAD-like helicases superfamily AFA_09830 SM00490 helicase superfamily c-terminal domain AFA_09900 SM01043 Bacterial transcriptional activator domain AFA_09950 SM00382 ATPases associated with a variety of cellular activities AFA_09950 SM01086 C-terminal, D2-small domain, of ClpB protein AFA_10035 SM00867 YceI-like domain AFA_10040 SM00867 YceI-like domain AFA_10065 SM00248 ankyrin repeats AFA_10180 SM00935 Outer membrane protein (OmpH-like) AFA_10190 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFA_10235 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFA_10290 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFA_10290 SM00091 PAS domain AFA_10290 SM00387 Histidine kinase-like ATPases AFA_10290 SM00388 His Kinase A (phosphoacceptor) domain AFA_10295 SM00421 helix_turn_helix, Lux Regulon AFA_10295 SM00448 cheY-homologous receiver domain AFA_10315 SM00838 Elongation factor G C-terminus AFA_10315 SM00889 Elongation factor G, domain IV AFA_10325 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFA_10335 SM00422 helix_turn_helix, mercury resistance AFA_10360 SM00822 AFA_10360 AFA_10380 SM00346 helix_turn_helix isocitrate lyase regulation AFA_10425 SM00382 ATPases associated with a variety of cellular activities AFA_10490 SM00072 Guanylate kinase homologues. AFA_10495 SM01409 AFA_10495 AFA_10500 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFA_10500 SM00954 Region found in RelA / SpoT proteins AFA_10535 SM00363 S4 RNA-binding domain AFA_10555 SM00938 Nitrogen regulatory protein P-II AFA_10595 SM00257 Lysin motif AFA_10610 SM01207 AFA_10610 AFA_10645 SM00382 ATPases associated with a variety of cellular activities AFA_10660 SM00382 ATPases associated with a variety of cellular activities AFA_10710 SM00382 ATPases associated with a variety of cellular activities AFA_10720 SM00346 helix_turn_helix isocitrate lyase regulation AFA_10760 SM00342 helix_turn_helix, arabinose operon control protein AFA_10805 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFA_10810 SM01329 AFA_10810 AFA_10835 SM00421 helix_turn_helix, Lux Regulon AFA_10835 SM00448 cheY-homologous receiver domain AFA_10840 SM00387 Histidine kinase-like ATPases AFA_10840 SM00388 His Kinase A (phosphoacceptor) domain AFA_10870 SM00116 Domain in cystathionine beta-synthase and other proteins. AFA_10905 SM00240 Forkhead associated domain AFA_10915 SM00858 AFA_10915 AFA_10940 SM00965 Secretin and TonB N terminus short domain AFA_10990 SM00881 CoA binding domain AFA_11025 SM00448 cheY-homologous receiver domain AFA_11025 SM00862 Transcriptional regulatory protein, C terminal AFA_11030 SM00387 Histidine kinase-like ATPases AFA_11030 SM00388 His Kinase A (phosphoacceptor) domain AFA_11045 SM00342 helix_turn_helix, arabinose operon control protein AFA_11095 SM01359 AFA_11095 AFA_11095 SM01360 AFA_11095 AFA_11110 SM00729 Elongator protein 3, MiaB family, Radical SAM AFA_11155 SM00387 Histidine kinase-like ATPases AFA_11155 SM00388 His Kinase A (phosphoacceptor) domain AFA_11160 SM00448 cheY-homologous receiver domain AFA_11160 SM00862 Transcriptional regulatory protein, C terminal AFA_11180 SM00382 ATPases associated with a variety of cellular activities AFA_11210 SM00357 Cold shock protein domain AFA_11230 SM00411 bacterial (prokaryotic) histone like domain AFA_11255 SM00344 helix_turn_helix ASNC type AFA_11290 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_11300 SM00967 RNA 2'-O ribose methyltransferase substrate binding AFA_11305 SM00316 Ribosomal protein S1-like RNA-binding domain AFA_11305 SM00357 Cold shock protein domain AFA_11305 SM00955 AFA_11305 AFA_11370 SM00382 ATPases associated with a variety of cellular activities AFA_11450 SM00342 helix_turn_helix, arabinose operon control protein AFA_11475 SM01092 CO dehydrogenase flavoprotein C-terminal domain AFA_11480 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFA_11500 SM00448 cheY-homologous receiver domain AFA_11500 SM00862 Transcriptional regulatory protein, C terminal AFA_11505 SM00387 Histidine kinase-like ATPases AFA_11515 SM00400 zinc finger AFA_11515 SM00493 AFA_11515 AFA_11515 SM00766 DNA primase DnaG DnaB-binding AFA_11530 SM00788 Adenylosuccinate synthetase AFA_11540 SM00244 prohibitin homologues AFA_11545 SM00244 prohibitin homologues AFA_11570 SM00564 beta-propeller repeat AFA_11600 SM00562 AFA_11600 AFA_11635 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AFA_11645 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_11645 SM00895 AFA_11645 AFA_11690 SM00434 DNA Topoisomerase IV AFA_11695 SM00387 Histidine kinase-like ATPases AFA_11695 SM00433 TopoisomeraseII AFA_11705 SM00357 Cold shock protein domain AFA_11705 SM00382 ATPases associated with a variety of cellular activities AFA_11705 SM00959 Rho termination factor, N-terminal domain AFA_11710 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFA_11735 SM00382 ATPases associated with a variety of cellular activities AFA_11735 SM01086 C-terminal, D2-small domain, of ClpB protein AFA_11740 SM00100 Cyclic nucleotide-monophosphate binding domain AFA_11740 SM00419 helix_turn_helix, cAMP Regulatory protein AFA_11815 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFA_11815 SM00465 GIY-YIG type nucleases (URI domain) AFA_11875 SM00479 AFA_11875 AFA_11920 SM00893 Electron transfer flavoprotein domain AFA_11925 SM00893 Electron transfer flavoprotein domain AFA_11945 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFA_11970 SM00411 bacterial (prokaryotic) histone like domain AFA_11975 SM00316 Ribosomal protein S1-like RNA-binding domain AFA_11995 SM00830 Chorismate mutase type II AFA_12005 SM00434 DNA Topoisomerase IV AFA_12060 SM01060 AFA_12060 AFA_12075 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_12110 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_12135 SM00528 Domain in histone-like proteins of HNS family AFA_12295 SM00470 ParB-like nuclease domain AFA_12310 SM00487 DEAD-like helicases superfamily AFA_12325 SM00857 Resolvase, N terminal domain AFA_12340 SM00382 ATPases associated with a variety of cellular activities AFA_12365 SM00357 Cold shock protein domain AFA_12430 SM00421 helix_turn_helix, Lux Regulon AFA_12430 SM00448 cheY-homologous receiver domain AFA_12435 SM00091 PAS domain AFA_12435 SM00387 Histidine kinase-like ATPases AFA_12435 SM00388 His Kinase A (phosphoacceptor) domain AFA_12435 SM00448 cheY-homologous receiver domain AFA_12465 SM00387 Histidine kinase-like ATPases AFA_12465 SM00388 His Kinase A (phosphoacceptor) domain AFA_12470 SM00448 cheY-homologous receiver domain AFA_12475 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFA_12475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFA_12530 SM00938 Nitrogen regulatory protein P-II AFA_12555 SM00342 helix_turn_helix, arabinose operon control protein AFA_12595 SM00062 Bacterial periplasmic substrate-binding proteins AFA_12610 SM00382 ATPases associated with a variety of cellular activities AFA_12645 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_12645 SM00529 Helix-turn-helix diphteria tox regulatory element AFA_12665 SM00528 Domain in histone-like proteins of HNS family AFA_12685 SM00829 Enoylreductase AFA_12695 SM01329 AFA_12695 AFA_12715 SM01209 AFA_12715 AFA_12715 SM01210 AFA_12715 AFA_12810 SM00382 ATPases associated with a variety of cellular activities AFA_12870 SM00981 AFA_12870 AFA_12895 SM01192 AFA_12895 AFA_12895 SM01193 AFA_12895 AFA_12900 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_12935 SM00882 Coenzyme A transferase AFA_12940 SM00882 Coenzyme A transferase AFA_13010 SM00382 ATPases associated with a variety of cellular activities AFA_13070 SM00358 Double-stranded RNA binding motif AFA_13070 SM00535 Ribonuclease III family AFA_13080 SM00838 Elongation factor G C-terminus AFA_13085 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFA_13110 SM00825 Beta-ketoacyl synthase AFA_13120 SM00822 AFA_13120 AFA_13125 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AFA_13160 SM00644 AFA_13160 AFA_13180 SM00363 S4 RNA-binding domain AFA_13185 SM00316 Ribosomal protein S1-like RNA-binding domain AFA_13205 SM00954 Region found in RelA / SpoT proteins AFA_13235 SM00478 endonuclease III AFA_13235 SM00525 AFA_13235 AFA_13250 SM00382 ATPases associated with a variety of cellular activities AFA_13255 SM00382 ATPases associated with a variety of cellular activities AFA_13290 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFA_13290 SM00292 breast cancer carboxy-terminal domain AFA_13290 SM00532 Ligase N family AFA_13295 SM00771 ZipA, C-terminal domain (FtsZ-binding) AFA_13300 SM00968 SMC proteins Flexible Hinge Domain AFA_13310 SM00986 Uracil DNA glycosylase superfamily AFA_13310 SM00987 UreE urease accessory protein, C-terminal domain AFA_13320 SM00448 cheY-homologous receiver domain AFA_13320 SM00862 Transcriptional regulatory protein, C terminal AFA_13325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFA_13325 SM00387 Histidine kinase-like ATPases AFA_13325 SM00388 His Kinase A (phosphoacceptor) domain AFA_13340 SM00487 DEAD-like helicases superfamily AFA_13340 SM00490 helicase superfamily c-terminal domain AFA_13340 SM00982 AFA_13340 AFA_13340 SM01058 CarD-like/TRCF domain AFA_13400 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFA_13405 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFA_13455 SM00829 Enoylreductase AFA_13475 SM00316 Ribosomal protein S1-like RNA-binding domain AFA_13475 SM00322 K homology RNA-binding domain AFA_13480 SM01387 AFA_13480 AFA_13545 SM00382 ATPases associated with a variety of cellular activities AFA_13555 SM00382 ATPases associated with a variety of cellular activities AFA_13555 SM00843 AFA_13555 AFA_13565 SM00463 Small MutS-related domain AFA_13570 SM00028 Tetratricopeptide repeats AFA_13585 SM00903 Flavin reductase like domain AFA_13590 SM00886 Stress responsive A/B Barrel Domain AFA_13610 SM01329 AFA_13610 AFA_13630 SM00382 ATPases associated with a variety of cellular activities AFA_13650 SM00382 ATPases associated with a variety of cellular activities AFA_13665 SM00028 Tetratricopeptide repeats AFA_13695 SM00858 AFA_13695 AFA_13730 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_13745 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_13755 SM00271 DnaJ molecular chaperone homology domain AFA_13805 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_13805 SM00895 AFA_13805 AFA_13830 SM00052 Putative diguanylate phosphodiesterase AFA_13830 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFA_13830 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFA_13830 SM00091 PAS domain AFA_13830 SM00267 diguanylate cyclase AFA_13850 SM00342 helix_turn_helix, arabinose operon control protein AFA_13875 SM00344 helix_turn_helix ASNC type AFA_13880 SM00530 Helix-turn-helix XRE-family like proteins AFA_13895 SM00487 DEAD-like helicases superfamily AFA_13895 SM00490 helicase superfamily c-terminal domain AFA_13955 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFA_13985 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_14020 SM00822 AFA_14020 AFA_14035 SM00382 ATPases associated with a variety of cellular activities AFA_14080 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_14115 SM00422 helix_turn_helix, mercury resistance AFA_14140 SM01012 AFA_14140 AFA_14180 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_14240 SM00052 Putative diguanylate phosphodiesterase AFA_14245 SM00857 Resolvase, N terminal domain AFA_14255 SM00382 ATPases associated with a variety of cellular activities AFA_14310 SM00116 Domain in cystathionine beta-synthase and other proteins. AFA_14330 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_14365 SM00346 helix_turn_helix isocitrate lyase regulation AFA_14370 SM00852 Probable molybdopterin binding domain AFA_14385 SM00487 DEAD-like helicases superfamily AFA_14385 SM00490 helicase superfamily c-terminal domain AFA_14445 SM00798 AICARFT/IMPCHase bienzyme AFA_14445 SM00851 MGS-like domain AFA_14455 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFA_14465 SM00382 ATPases associated with a variety of cellular activities AFA_14480 SM00151 SWI complex, BAF60b domains AFA_14530 SM00450 Rhodanese Homology Domain AFA_14585 SM00382 ATPases associated with a variety of cellular activities AFA_14600 SM00387 Histidine kinase-like ATPases AFA_14600 SM00388 His Kinase A (phosphoacceptor) domain AFA_14605 SM00448 cheY-homologous receiver domain AFA_14605 SM00862 Transcriptional regulatory protein, C terminal AFA_14690 SM00382 ATPases associated with a variety of cellular activities AFA_14735 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_14775 SM01150 AFA_14775 AFA_14810 SM00267 diguanylate cyclase AFA_14825 SM00883 Chaperonin 10 Kd subunit AFA_14840 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AFA_14855 SM00346 helix_turn_helix isocitrate lyase regulation AFA_14890 SM00346 helix_turn_helix isocitrate lyase regulation AFA_14895 SM00880 AFA_14895 AFA_14895 SM01118 AFA_14895 AFA_14900 SM00382 ATPases associated with a variety of cellular activities AFA_14900 SM00962 SRP54-type protein, GTPase domain AFA_14900 SM00963 SRP54-type protein, helical bundle domain AFA_14955 SM00869 Autotransporter beta-domain AFA_14975 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFA_14985 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFA_14995 SM00382 ATPases associated with a variety of cellular activities AFA_15000 SM00382 ATPases associated with a variety of cellular activities AFA_15020 SM00267 diguanylate cyclase AFA_15045 SM00849 Metallo-beta-lactamase superfamily AFA_15050 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_15050 SM00866 AFA_15050 AFA_15055 SM00028 Tetratricopeptide repeats AFA_15055 SM01043 Bacterial transcriptional activator domain AFA_15060 SM00155 Phospholipase D. Active site motifs. AFA_15100 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFA_15150 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_15155 SM00382 ATPases associated with a variety of cellular activities AFA_15190 SM00479 AFA_15190 AFA_15215 SM00849 Metallo-beta-lactamase superfamily AFA_15220 SM00257 Lysin motif AFA_15230 SM00382 ATPases associated with a variety of cellular activities AFA_15230 SM00448 cheY-homologous receiver domain AFA_15235 SM00387 Histidine kinase-like ATPases AFA_15235 SM00388 His Kinase A (phosphoacceptor) domain AFA_15250 SM00450 Rhodanese Homology Domain AFA_15285 SM00881 CoA binding domain AFA_15295 SM00829 Enoylreductase AFA_15310 SM00346 helix_turn_helix isocitrate lyase regulation AFA_15320 SM00829 Enoylreductase AFA_15370 SM00382 ATPases associated with a variety of cellular activities AFA_15375 SM00062 Bacterial periplasmic substrate-binding proteins AFA_15410 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFA_15430 SM00448 cheY-homologous receiver domain AFA_15430 SM00862 Transcriptional regulatory protein, C terminal AFA_15435 SM00387 Histidine kinase-like ATPases AFA_15435 SM00388 His Kinase A (phosphoacceptor) domain AFA_15460 SM01236 AFA_15460 AFA_15470 SM00342 helix_turn_helix, arabinose operon control protein AFA_15500 SM00363 S4 RNA-binding domain AFA_15535 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFA_15570 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFA_15580 SM00831 Cation transporter/ATPase, N-terminus AFA_15585 SM00387 Histidine kinase-like ATPases AFA_15585 SM00388 His Kinase A (phosphoacceptor) domain AFA_15590 SM00421 helix_turn_helix, Lux Regulon AFA_15590 SM00448 cheY-homologous receiver domain AFA_15600 SM01322 AFA_15600 AFA_15610 SM00344 helix_turn_helix ASNC type AFA_15630 SM00478 endonuclease III AFA_15655 SM00878 Biotin carboxylase C-terminal domain AFA_15685 SM00955 AFA_15685 AFA_15715 SM00563 Phosphate acyltransferases AFA_15720 SM00732 Likely ribonuclease with RNase H fold. AFA_15755 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_15790 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AFA_15800 SM00862 Transcriptional regulatory protein, C terminal AFA_15805 SM00530 Helix-turn-helix XRE-family like proteins AFA_15810 SM00530 Helix-turn-helix XRE-family like proteins AFA_15830 SM00382 ATPases associated with a variety of cellular activities AFA_15845 SM00062 Bacterial periplasmic substrate-binding proteins AFA_15850 SM00382 ATPases associated with a variety of cellular activities AFA_15860 SM00478 endonuclease III AFA_15900 SM00845 GatB domain AFA_15940 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_15955 SM00881 CoA binding domain AFA_15975 SM00382 ATPases associated with a variety of cellular activities AFA_15980 SM00100 Cyclic nucleotide-monophosphate binding domain AFA_15980 SM00419 helix_turn_helix, cAMP Regulatory protein AFA_16100 SM00421 helix_turn_helix, Lux Regulon AFA_16125 SM00873 B3/4 domain AFA_16135 SM00342 helix_turn_helix, arabinose operon control protein AFA_16140 SM00530 Helix-turn-helix XRE-family like proteins AFA_16145 SM01018 B12 binding domain AFA_16160 SM00965 Secretin and TonB N terminus short domain AFA_16225 SM00978 AFA_16225 AFA_16235 SM00448 cheY-homologous receiver domain AFA_16235 SM00862 Transcriptional regulatory protein, C terminal AFA_16240 SM00387 Histidine kinase-like ATPases AFA_16240 SM00388 His Kinase A (phosphoacceptor) domain AFA_16250 SM00796 Allophanate hydrolase subunit 1 AFA_16255 SM00797 Allophanate hydrolase subunit 2 AFA_16280 SM00869 Autotransporter beta-domain AFA_16285 SM00869 Autotransporter beta-domain AFA_16290 SM00869 Autotransporter beta-domain AFA_16295 SM00869 Autotransporter beta-domain AFA_16305 SM00382 ATPases associated with a variety of cellular activities AFA_16310 SM00382 ATPases associated with a variety of cellular activities AFA_16335 SM00116 Domain in cystathionine beta-synthase and other proteins. AFA_16355 SM00382 ATPases associated with a variety of cellular activities AFA_16400 SM00749 bacterial OsmY and nodulation domain AFA_16425 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFA_16425 SM00245 tail specific protease AFA_16435 SM00855 Phosphoglycerate mutase family AFA_16440 SM00450 Rhodanese Homology Domain AFA_16485 SM00448 cheY-homologous receiver domain AFA_16490 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFA_16490 SM00387 Histidine kinase-like ATPases AFA_16490 SM00388 His Kinase A (phosphoacceptor) domain AFA_16505 SM00729 Elongator protein 3, MiaB family, Radical SAM AFA_16535 SM00382 ATPases associated with a variety of cellular activities AFA_16610 SM00382 ATPases associated with a variety of cellular activities AFA_16660 SM00905 Dihydroneopterin aldolase AFA_16685 SM00937 AFA_16685 AFA_16700 SM00267 diguanylate cyclase AFA_16715 SM00965 Secretin and TonB N terminus short domain AFA_16765 SM00387 Histidine kinase-like ATPases AFA_16765 SM00388 His Kinase A (phosphoacceptor) domain AFA_16770 SM00448 cheY-homologous receiver domain AFA_16770 SM00862 Transcriptional regulatory protein, C terminal AFA_16790 SM00530 Helix-turn-helix XRE-family like proteins AFA_16805 SM00382 ATPases associated with a variety of cellular activities AFA_16820 SM00100 Cyclic nucleotide-monophosphate binding domain AFA_16820 SM00419 helix_turn_helix, cAMP Regulatory protein AFA_16830 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFA_16870 SM00530 Helix-turn-helix XRE-family like proteins AFA_16875 SM01007 Class II Aldolase and Adducin N-terminal domain AFA_16910 SM00450 Rhodanese Homology Domain AFA_16915 SM00900 AFA_16915 AFA_16925 SM00710 Parallel beta-helix repeats AFA_16925 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AFA_16930 SM00382 ATPases associated with a variety of cellular activities AFA_17010 SM00984 UDP binding domain AFA_17030 SM00382 ATPases associated with a variety of cellular activities AFA_17050 SM00822 AFA_17050 AFA_17050 SM00823 Phosphopantetheine attachment site AFA_17050 SM00825 Beta-ketoacyl synthase AFA_17050 SM00826 AFA_17050 AFA_17050 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AFA_17050 SM00829 Enoylreductase AFA_17050 SM01294 AFA_17050 AFA_17065 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_17100 SM00382 ATPases associated with a variety of cellular activities AFA_17125 SM00382 ATPases associated with a variety of cellular activities AFA_17205 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFA_17330 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_17330 SM00895 AFA_17330 AFA_17335 SM00344 helix_turn_helix ASNC type AFA_17380 SM00267 diguanylate cyclase AFA_17420 SM00822 AFA_17420 AFA_17445 SM00749 bacterial OsmY and nodulation domain AFA_17455 SM00382 ATPases associated with a variety of cellular activities AFA_17475 SM00965 Secretin and TonB N terminus short domain AFA_17500 SM00344 helix_turn_helix ASNC type AFA_17575 SM00342 helix_turn_helix, arabinose operon control protein AFA_17610 SM00829 Enoylreductase AFA_17615 SM00155 Phospholipase D. Active site motifs. AFA_17635 SM00834 Putative regulatory protein AFA_17690 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_17690 SM00866 AFA_17690 AFA_17695 SM00342 helix_turn_helix, arabinose operon control protein AFA_17710 SM00422 helix_turn_helix, mercury resistance AFA_17765 SM00849 Metallo-beta-lactamase superfamily AFA_17825 SM01236 AFA_17825 AFA_17845 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_17845 SM00895 AFA_17845 AFA_17890 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFA_17920 SM00052 Putative diguanylate phosphodiesterase AFA_17920 SM00267 diguanylate cyclase AFA_17945 SM01004 Delta-aminolevulinic acid dehydratase AFA_17960 SM00342 helix_turn_helix, arabinose operon control protein AFA_17965 SM00903 Flavin reductase like domain AFA_17980 SM00662 RNA polymerases D AFA_17985 SM00363 S4 RNA-binding domain AFA_17985 SM01390 AFA_17985 AFA_18060 SM01374 AFA_18060 AFA_18065 SM00052 Putative diguanylate phosphodiesterase AFA_18065 SM00267 diguanylate cyclase AFA_18075 SM00203 Tachykinin family AFA_18075 SM00327 von Willebrand factor (vWF) type A domain AFA_18080 SM00421 helix_turn_helix, Lux Regulon AFA_18090 SM00382 ATPases associated with a variety of cellular activities AFA_18125 SM00382 ATPases associated with a variety of cellular activities AFA_18215 SM00382 ATPases associated with a variety of cellular activities AFA_18230 SM00342 helix_turn_helix, arabinose operon control protein AFA_18250 SM00322 K homology RNA-binding domain AFA_18265 SM01382 AFA_18265 AFA_18265 SM01383 AFA_18265 AFA_18285 SM00382 ATPases associated with a variety of cellular activities AFA_18295 SM01403 AFA_18295 AFA_18305 SM00838 Elongation factor G C-terminus AFA_18305 SM00889 Elongation factor G, domain IV AFA_18320 SM00448 cheY-homologous receiver domain AFA_18320 SM00862 Transcriptional regulatory protein, C terminal AFA_18330 SM00387 Histidine kinase-like ATPases AFA_18330 SM01080 AFA_18330 AFA_18335 SM00342 helix_turn_helix, arabinose operon control protein AFA_18350 SM00663 RNA polymerase I subunit A N-terminus AFA_18375 SM00649 Ribosomal protein L11/L12 AFA_18380 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AFA_18380 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AFA_18415 SM00470 ParB-like nuclease domain AFA_18430 SM01228 AFA_18430 AFA_18445 SM00267 diguanylate cyclase AFA_18485 SM00869 Autotransporter beta-domain AFA_18510 SM00530 Helix-turn-helix XRE-family like proteins AFA_18550 SM00382 ATPases associated with a variety of cellular activities AFA_18555 SM00382 ATPases associated with a variety of cellular activities AFA_18595 SM01060 AFA_18595 AFA_18605 SM01234 AFA_18605