locus strain_id interpro function go others AFA_00005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001957|IPR010921|IPR013159|IPR013317|IPR018312|IPR020591|IPR024633|IPR027417|IPR038454 Chromosomal replication control, initiator DnaA|Chromosomal replication control, initiator DnaA, conserved site|Chromosomal replication control, initiator DnaA-like|Chromosomal replication initiator protein DnaA|Chromosomal replication initiator, DnaA C-terminal|DnaA N-terminal domain|DnaA, N-terminal domain superfamily|P-loop containing nucleoside triphosphate hydrolase|Trp repressor/replication initiator GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275|GO:0043565 G3DSA:1.10.1750.10|G3DSA:1.10.8.60|G3DSA:3.30.300.180|G3DSA:3.40.50.300|MF_00377|PF00308|PF08299|PF11638|PR00051|PS01008|SM00760|SSF48295|SSF52540|TIGR00362 AFA_00010 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001001|IPR022634|IPR022635|IPR022637 DNA polymerase III, beta sliding clamp|DNA polymerase III, beta sliding clamp, C-terminal|DNA polymerase III, beta sliding clamp, N-terminal|DNA polymerase III, beta sliding clamp, central GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 G3DSA:3.10.150.10|PF00712|PF02767|PF02768|PIRSF000804|SM00480|SSF55979|TIGR00663 AFA_00015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000565|IPR001241|IPR002288|IPR003594|IPR006171|IPR011557|IPR013506|IPR013759|IPR013760|IPR014721|IPR018522|IPR020568|IPR036890 DNA gyrase B subunit, C-terminal|DNA gyrase, subunit B|DNA topoisomerase, type IIA|DNA topoisomerase, type IIA, conserved site|DNA topoisomerase, type IIA, subunit B|DNA topoisomerase, type IIA, subunit B, C-terminal|DNA topoisomerase, type IIA, subunit B, domain 2|DNA topoisomerase, type IIA-like domain superfamily|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|TOPRIM domain GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 G3DSA:3.30.230.10|G3DSA:3.30.565.10|G3DSA:3.40.50.670|MF_01898|PF00204|PF00986|PF01751|PF02518|PR00418|PR01159|PS00177|SM00387|SM00433|SSF54211|SSF55874|SSF56719|TIGR01059 AFA_00020 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000748|IPR002942|IPR006145|IPR018496|IPR020103|IPR036986 Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, RsuA/RluB/E/F|Pseudouridine synthase, RsuA/RluB/E/F, conserved site|Pseudouridine synthase, catalytic domain superfamily|RNA-binding S4 domain|RNA-binding S4 domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982|GO:0016866 G3DSA:3.10.290.10|G3DSA:3.30.70.1560|G3DSA:3.30.70.580|PF00849|PF01479|PS01149|SM00363|SSF55120|SSF55174|TIGR00093 AFA_00025 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 AFA_00030 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_00035 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015590|IPR016161|IPR016162|IPR016163 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|SSF53720 AFA_00040 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000172|IPR007867|IPR012132|IPR027424|IPR036188 FAD/NAD(P)-binding domain superfamily|Glucose Oxidase, domain 2|Glucose-methanol-choline oxidoreductase|Glucose-methanol-choline oxidoreductase, C-terminal|Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 G3DSA:1.10.1220.110|G3DSA:3.30.410.40|G3DSA:3.50.50.60|G3DSA:4.10.450.10|PF00732|PF05199|PIRSF000137|PS00623|PS00624|SSF51905|SSF54373 AFA_00045 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_00050 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001279|IPR036866 Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like G3DSA:3.60.15.10|PF00753|SM00849|SSF56281 AFA_00055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006913|IPR011057 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V|Mss4-like superfamily GO:0016846 G3DSA:2.170.150.70|PF04828|SSF51316 AFA_00060 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|SM00345|SM00895|SSF46785|SSF48008 AFA_00065 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit PF06808 AFA_00070 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_00075 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000951|IPR001041|IPR001433|IPR006058|IPR012675|IPR017938|IPR036010|IPR039261 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Oxidoreductase FAD/NAD(P)-binding|Phthalate dioxygenase reductase|Riboflavin synthase-like beta-barrel GO:0009055|GO:0016491|GO:0051536|GO:0051537|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00111|PF00175|PR00409|PS00197|SSF52343|SSF54292|SSF63380 AFA_00080 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015881|IPR017941|IPR036922 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site|Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0005506|GO:0016491|GO:0051537|GO:0055114 G3DSA:2.102.10.10|PF00355|PS00570|SSF50022|SSF55961 AFA_00085 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000506|IPR003781|IPR008927|IPR013023|IPR013116|IPR014359|IPR036291 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|CoA-binding|Ketol-acid reductoisomerase|Ketol-acid reductoisomerase, C-terminal|Ketol-acid reductoisomerase, N-terminal|Ketol-acid reductoisomerase, prokaryotic|NAD(P)-binding domain superfamily GO:0004455|GO:0009082|GO:0016491|GO:0048037|GO:0050661|GO:0055114 G3DSA:1.10.3730.40|G3DSA:3.40.50.720|MF_00435|PF01450|PF07991|PIRSF000116|SM00881|SSF48179|SSF51735|TIGR00465 AFA_00090 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_00095 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001303|IPR036409 Class II aldolase/adducin N-terminal|Class II aldolase/adducin N-terminal domain superfamily G3DSA:3.40.225.10|PF00596|SM01007|SSF53639 AFA_00100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018389|IPR026289|IPR038404 Solute binding protein, mannitol/chloroaromatic system-like|TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 G3DSA:3.40.190.10|G3DSA:3.40.190.170|PF03480|PIRSF039026 AFA_00105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000709|IPR028081|IPR028082 Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I GO:0006865 G3DSA:3.40.50.2300|PF13458|PR00337|SSF53822 AFA_00110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_00115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_00120 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|SM00382|SSF52540 AFA_00125 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 AFA_00135 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF12697|PR00111|SSF53474 AFA_00140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR011663|IPR028978|IPR036388|IPR036390 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|SM00345|SM00866|SSF46785|SSF64288 AFA_00145 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001753|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:3.90.226.10|PF00378|SSF52096 AFA_00150 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:3.40.50.12500 AFA_00155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_00160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|SM00345|SM00895|SSF46785|SSF48008 AFA_00165 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 AFA_00170 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_00175 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR026045 Ferric binding protein G3DSA:3.40.190.10|PF13343|PIRSF002825|SSF53850 AFA_00180 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR008995|IPR013611|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 2 GO:0005524|GO:0016887|GO:0022857|GO:0043190|GO:0055085 G3DSA:2.40.50.140|G3DSA:2.40.50.940|G3DSA:3.40.50.300|PF00005|PF08402|PS00211|SM00382|SSF50331|SSF52540 AFA_00185 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_00190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004838|IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Aminotransferases, class-I, pyridoxal-phosphate-binding site|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PS00105|SSF53383 AFA_00195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012649|IPR015813 Phosphonopyruvate hydrolase|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 G3DSA:3.20.20.60|PF13714|SSF51621|TIGR02321 AFA_00200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003495|IPR011629|IPR027417|IPR036627 CobW-like, C-terminal domain superfamily|CobW/HypB/UreG, nucleotide-binding domain|Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.30.1220.10|G3DSA:3.40.50.300|PF02492|PF07683|SM00833|SSF52540|SSF90002 AFA_00205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002328|IPR011032|IPR013149|IPR013154|IPR020843|IPR036291 Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|Alcohol dehydrogenase, zinc-type, conserved site|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain GO:0008270|GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PS00059|SM00829|SSF50129|SSF51735 AFA_00210 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_00215 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_00220 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004045|IPR036249|IPR036282 Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF13410|PF13417|SSF47616|SSF52833 AFA_00225 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010394 5-nucleotidase GO:0000166|GO:0000287|GO:0005737|GO:0008253|GO:0009117 PF06189 AFA_00230 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 AFA_00235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000917|IPR017849|IPR017850|IPR032506 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain superfamily|Domain of unknown function DUF4976|Sulfatase, N-terminal GO:0003824|GO:0008484 G3DSA:3.40.720.10|PF00884|PF16347|SSF53649 AFA_00240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_00245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR023187|IPR036388|IPR036390 MarR-type HTH domain|Transcriptional regulator MarR-type, conserved site|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01047|PS01117|SM00347|SSF46785 AFA_00250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011766|IPR029061 Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 G3DSA:3.40.50.970|PF02775|SSF52518 AFA_00255 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002869|IPR019752 Pyruvate-flavodoxin oxidoreductase, central domain|Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016491|GO:0016903|GO:0055114 G3DSA:3.40.920.10|PF01558|SSF53323 AFA_00260 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR036388|IPR036390 MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01047|PR00598|SM00347|SSF46785 AFA_00265 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006683|IPR029069 HotDog domain superfamily|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637 AFA_00270 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001155|IPR013785|IPR036188 Aldolase-type TIM barrel|FAD/NAD(P)-binding domain superfamily|NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0003824|GO:0010181|GO:0016491|GO:0055114 G3DSA:3.20.20.70|G3DSA:3.30.9.20|G3DSA:3.50.50.60|PF00724|PR00420|SSF51395|SSF51905 AFA_00275 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011051|IPR013096|IPR014710 Cupin 2, conserved barrel|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF07883|SSF51182 AFA_00280 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011234|IPR036663 Fumarylacetoacetase-like, C-terminal|Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 G3DSA:3.90.850.10|PF01557|SSF56529 AFA_00285 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000132|IPR003010|IPR036526 Carbon-nitrogen hydrolase|Carbon-nitrogen hydrolase superfamily|Nitrilase/cyanide hydratase, conserved site GO:0006807|GO:0016810 G3DSA:3.60.110.10|PF00795|PS00920|SSF56317 AFA_00290 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007325|IPR037175 Kynurenine formamidase superfamily|Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 G3DSA:3.50.30.50|PF04199|SSF102198 AFA_00295 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000951|IPR001041|IPR001433|IPR006058|IPR008333|IPR012675|IPR017938|IPR036010|IPR039261 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain|Oxidoreductase FAD/NAD(P)-binding|Phthalate dioxygenase reductase|Riboflavin synthase-like beta-barrel GO:0009055|GO:0016491|GO:0051536|GO:0051537|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00111|PF00175|PF00970|PR00409|PS00197|SSF52343|SSF54292|SSF63380 AFA_00300 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001663|IPR015879|IPR017941|IPR036922 Aromatic-ring-hydroxylating dioxygenase, alpha subunit|Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain|Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0005506|GO:0016491|GO:0044237|GO:0051537|GO:0055114 G3DSA:2.102.10.10|G3DSA:3.90.380.10|PF00355|PF00848|PR00090|SSF50022|SSF55961 AFA_00305 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000391|IPR032710 NTF2-like domain superfamily|Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 G3DSA:3.10.450.50|PF00866|SSF54427 AFA_00310 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 AFA_00315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002155|IPR016039 Thiolase|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PIRSF000429|SSF53901 AFA_00320 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002878|IPR012340|IPR022002 Domain of unknown function DUF35, OB-fold, C-terminal|Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal|Nucleic acid-binding, OB-fold G3DSA:1.10.12.20|PF01796|PF12172|SSF50249 AFA_00325 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00081|PS00061|SSF51735 AFA_00330 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|G3DSA:1.20.1720.10|PF07690|PR01036|SSF103473 AFA_00335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000551|IPR009061 MerR-type HTH domain|Putative DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.1660.10|PF13411|PR00040|PS00552|SM00422|SSF46955 AFA_00340 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_00345 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 AFA_00350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480|SSF53850 AFA_00360 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025737 MetA-pathway of phenol degradation, putative PF13557 AFA_00365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735 AFA_00370 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR036188 FAD/NAD(P)-binding domain superfamily G3DSA:3.30.9.40|G3DSA:3.50.50.60|PR00420|SSF51905 AFA_00375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002563|IPR012349 FMN-binding split barrel|Flavin reductase like domain GO:0010181|GO:0048037 G3DSA:2.30.110.10|PF01613|SM00903|SSF50475 AFA_00380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR036188 FAD/NAD(P)-binding domain superfamily G3DSA:3.50.50.60|PF13450|SSF51905 AFA_00385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009057|IPR018060|IPR018062|IPR035418 DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox-like domain superfamily|Transcription regulator HTH, AraC- type, ligand binding domain-like GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12833|PF14525|PS00041|SM00342|SSF46689 AFA_00390 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002563|IPR012349 FMN-binding split barrel|Flavin reductase like domain GO:0010181|GO:0048037 G3DSA:2.30.110.10|PF01613|SM00903|SSF50475 AFA_00395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540 AFA_00405 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003190|IPR009010 Aspartate decarboxylase|Aspartate decarboxylase-like domain superfamily GO:0004068|GO:0006523 G3DSA:2.40.40.20|MF_00446|PD009294|PF02261|SSF50692|TIGR00223 AFA_00410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540|TIGR01727 AFA_00415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540|TIGR01727 AFA_00420 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_00425 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_00430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000914|IPR023765|IPR030678 Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain|Solute-binding protein family 5, conserved site GO:0043190|GO:0055085 G3DSA:3.10.105.10|G3DSA:3.40.190.10|PF00496|PIRSF002741|PS01040|SSF53850 AFA_00435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001126|IPR017961|IPR022880|IPR036775 DNA polymerase IV|DNA polymerase, Y-family, little finger domain|DNA polymerase, Y-family, little finger domain superfamily|UmuC domain GO:0003684|GO:0003887|GO:0006281 G3DSA:1.10.150.20|G3DSA:2.30.40.20|G3DSA:3.30.1490.100|G3DSA:3.30.70.270|MF_01113|PF00817|PF11799|SSF100879|SSF56672 AFA_00440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007627|IPR013249|IPR013324|IPR013325|IPR014284|IPR036388 RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF04542|PF08281|SSF88659|SSF88946|TIGR02937 AFA_00445 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006860|IPR012373|IPR032623 Fe(2+)-dicitrate sensor, transmembrane component|FecR protein|FecR, N-terminal G3DSA:2.60.120.1440|PF04773|PF16220|PIRSF018266 AFA_00450 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR010105|IPR010917|IPR011662|IPR012910|IPR036942|IPR037066 Secretin/TonB, short N-terminal domain|TonB-dependent receptor, conserved site|TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily|TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0019867|GO:0038023 G3DSA:2.170.130.10|G3DSA:2.40.170.20|G3DSA:3.55.50.30|PF00593|PF07660|PF07715|PS01156|SM00965|SSF56935|TIGR01783 AFA_00455 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001466|IPR012338 Beta-lactamase-related|Beta-lactamase/transpeptidase-like G3DSA:3.40.710.10|PF00144|SSF56601 AFA_00460 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004636|IPR005814|IPR015421|IPR015422|IPR015424 Acetylornithine/Succinylornithine transaminase family|Aminotransferase class-III|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0006525|GO:0008483|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_01107|PF00202|PIRSF000521|PS00600|SSF53383 AFA_00465 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 AFA_00470 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007712|IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily|Toxin-antitoxin system, RelE/ParE toxin family G3DSA:3.30.2310.20|PF05016|SSF143011 AFA_00475 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004872 Lipoprotein NlpA family G3DSA:3.40.190.10|PF03180|SSF53850 AFA_00480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004872 Lipoprotein NlpA family G3DSA:3.40.190.10|PF03180|SSF53850 AFA_00485 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR018449|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|NIL domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.30.70.260|G3DSA:3.40.50.300|PF00005|PF09383|PS00211|SM00382|SM00930|SSF52540|SSF55021 AFA_00490 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_00495 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009100|IPR013107|IPR013786|IPR023922|IPR036250|IPR037069 Acyl-CoA dehydrogenase, C-terminal domain|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Sulphate-starvation-induced SfnB GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF02771|PF08028|PIRSF016578|SSF47203|SSF56645|TIGR04022 AFA_00500 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006091|IPR009100|IPR013107|IPR013786|IPR023922|IPR036250|IPR037069 Acyl-CoA dehydrogenase, C-terminal domain|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain|Sulphate-starvation-induced SfnB GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF02770|PF02771|PF08028|PIRSF016578|SSF47203|SSF56645|TIGR04022 AFA_00505 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011251|IPR016215|IPR036661 Luciferase-like domain|Luciferase-like domain superfamily|Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497|GO:0016705|GO:0055114 G3DSA:3.20.20.30|PF00296|PIRSF000337|SSF51679|TIGR03860 AFA_00510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004872 Lipoprotein NlpA family G3DSA:3.40.190.10|PF03180|SSF53850 AFA_00515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011251|IPR016215|IPR036661 Luciferase-like domain|Luciferase-like domain superfamily|Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497|GO:0016705|GO:0055114 G3DSA:3.20.20.30|PF00296|PIRSF000337|SSF51679|TIGR03860 AFA_00520 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004872 Lipoprotein NlpA family G3DSA:3.40.190.10|PF03180|SSF53850 AFA_00525 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006091|IPR009100|IPR013107|IPR036250|IPR037069 Acyl-CoA dehydrogenase, C-terminal domain|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF02770|PF08028|PIRSF016578|SSF47203|SSF56645 AFA_00530 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006680|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase GO:0016787 G3DSA:3.20.20.140|PF04909|SSF51556 AFA_00535 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011251|IPR019911|IPR036661 Alkanesulphonate monooxygenase, FMN-dependent|Luciferase-like domain|Luciferase-like domain superfamily GO:0008726|GO:0016705|GO:0055114 G3DSA:3.20.20.30|MF_01229|PF00296|SSF51679|TIGR03565 AFA_00540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005025|IPR019912|IPR029039 FMN reductase, MsuE-like|Flavoprotein-like superfamily|NADPH-dependent FMN reductase-like GO:0016491 G3DSA:3.40.50.360|PF03358|SSF52218|TIGR03566 AFA_00545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011051|IPR014710|IPR025979 ChrR-like cupin domain|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF12973|SSF51182 AFA_00550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009057|IPR018060|IPR018062|IPR035418 DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox-like domain superfamily|Transcription regulator HTH, AraC- type, ligand binding domain-like GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12833|PF14525|PS00041|SM00342|SSF46689 AFA_00555 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002781 Transmembrane protein TauE-like GO:0016021 PF01925 AFA_00560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 AFA_00565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002638|IPR006242|IPR013785|IPR022412|IPR027277|IPR036068|IPR037128 Aldolase-type TIM barrel|Nicotinate phosphoribosyltransferase-like, C-terminal|Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD|Putative pyrophosphorylase ModD|Quinolinate phosphoribosyl transferase, C-terminal|Quinolinate phosphoribosyl transferase, N-terminal|Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0003824|GO:0004514|GO:0009435|GO:0016763 G3DSA:3.20.20.70|G3DSA:3.90.1170.20|PF01729|PF02749|PIRSF006250|SSF51690|SSF54675|TIGR01334 AFA_00570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR011867|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016020|GO:0016021|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR02141 AFA_00575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 G3DSA:3.40.190.10|PF13531|SSF53850|TIGR01256 AFA_00580 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001465|IPR006253|IPR011076|IPR023310 Malate synthase|Malate synthase G|Malate synthase G, beta sub-domain|Malate synthase-like superfamily GO:0003824|GO:0004474|GO:0006097 G3DSA:1.20.1220.12|G3DSA:2.170.170.11|G3DSA:3.20.20.360|MF_00641|PF01274|SSF51645|TIGR01345 AFA_00590 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000845|IPR011271|IPR018953|IPR035994|IPR037109 AMP nucleosidase|AMP nucleoside phosphorylase, N-terminal|AMP nucleoside phosphorylase, N-terminal domain superfamily|Nucleoside phosphorylase domain|Nucleoside phosphorylase superfamily GO:0003824|GO:0008714|GO:0009116|GO:0044209 G3DSA:3.30.1730.10|G3DSA:3.40.50.1580|MF_01932|PF01048|PF10423|SSF53167|TIGR01717 AFA_00595 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004682|IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA|TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480|PIRSF006470|TIGR00787 AFA_00600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 AFA_00605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_00610 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001214 SET domain GO:0005515 G3DSA:2.170.270.10|PF00856|SM00317|SSF82199 AFA_00615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000399|IPR011766|IPR012000|IPR012001|IPR012846|IPR029035|IPR029061 Acetolactate synthase, large subunit, biosynthetic|DHS-like NAD/FAD-binding domain superfamily|TPP-binding enzyme, conserved site|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain|Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0003824|GO:0003984|GO:0009082|GO:0030976|GO:0050660 G3DSA:3.40.50.1220|G3DSA:3.40.50.970|PF00205|PF02775|PF02776|PS00187|SSF52467|SSF52518|TIGR00118 AFA_00620 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004682|IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA|TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480|PIRSF006470|SSF53850|TIGR00787 AFA_00625 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_00630 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 AFA_00635 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007418 Protein of unknown function DUF474 PIRSF015875 AFA_00640 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003812|IPR036597 Fido domain|Fido-like domain superfamily G3DSA:1.10.3290.10|PF02661|SSF140931 AFA_00645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003601|IPR003602|IPR005738|IPR006171|IPR013497|IPR013824|IPR013825|IPR013826|IPR023405|IPR023406|IPR025589 DNA topoisomerase III|DNA topoisomerase, type IA, DNA-binding domain|DNA topoisomerase, type IA, active site|DNA topoisomerase, type IA, central|DNA topoisomerase, type IA, central region, subdomain 1|DNA topoisomerase, type IA, central region, subdomain 2|DNA topoisomerase, type IA, central region, subdomain 3|DNA topoisomerase, type IA, core domain|DNA topoisomerase, type IA, domain 2|TOPRIM domain|Topoisomerase C-terminal repeat GO:0003677|GO:0003916|GO:0003917|GO:0006265 G3DSA:1.10.290.10|G3DSA:1.10.460.10|G3DSA:2.70.20.10|G3DSA:3.40.50.140|PF01131|PF01751|PF13342|PR00417|PS00396|SM00436|SM00437|SM00493|SSF56712|TIGR01056 AFA_00660 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007456 Smg MF_00598|PF04361 AFA_00665 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000924|IPR014729|IPR020058|IPR022380 Glutamyl-Q tRNA(Asp) synthetase|Glutamyl/glutaminyl-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain|Rossmann-like alpha/beta/alpha sandwich fold GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006400|GO:0043039 G3DSA:3.40.50.620|MF_01428|PF00749|PR00987|SSF52374|TIGR03838 AFA_00670 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000089|IPR001882|IPR005479|IPR005481|IPR005482|IPR011053|IPR011054|IPR016185 Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Biotin-binding site|Biotin/lipoyl attachment|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain superfamily|Rudiment single hybrid motif|Single hybrid motif GO:0005524 G3DSA:2.40.50.100|G3DSA:3.30.470.130|PF00289|PF00364|PF02785|PF02786|PS00188|PS00866|PS00867|SM00878|SM01209|SSF51230|SSF51246|SSF52440|SSF56059 AFA_00675 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029045|IPR034733 Acetyl-CoA carboxylase|ClpP/crotonase-like domain superfamily G3DSA:3.90.226.10|PF01039|SSF52096 AFA_00680 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002155|IPR016039|IPR020610|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00099|SSF53901|TIGR01930 AFA_00685 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 MF_00747|PD043552|PF06315|PIRSF000719 AFA_00690 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00072|PS00073|SSF47203|SSF56645 AFA_00695 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000551|IPR009061 MerR-type HTH domain|Putative DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.1660.10|PF13411|SM00422|SSF46955 AFA_00700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001279|IPR036866 Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like G3DSA:3.60.15.10|PF00753|SM00849|SSF56281 AFA_00705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000277|IPR006233|IPR015421|IPR015422|IPR015424 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme|Cystathionine beta-lyase, bacterial|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0004121|GO:0005737|GO:0006520|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01053|PIRSF001434|PS00868|SSF53383|TIGR01324 AFA_00710 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001853|IPR023205|IPR036249 DSBA-like thioredoxin domain|Thiol:disulphide interchange protein DsbA/DsbL|Thioredoxin-like superfamily GO:0015035 G3DSA:3.40.30.10|PF01323|PIRSF001488|SSF52833 AFA_00715 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007730|IPR036680 Sporulation-like domain|Sporulation-like domain superfamily GO:0042834 G3DSA:3.30.70.1070|PF05036|SSF110997 AFA_00720 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001278|IPR001412|IPR005148|IPR008909|IPR009080|IPR014729|IPR035684|IPR036695 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Arginine-tRNA ligase|Arginyl tRNA synthetase N-terminal domain|Arginyl tRNA synthetase N-terminal domain superfamily|Arginyl-tRNA synthetase, catalytic core domain|DALR anticodon binding|Rossmann-like alpha/beta/alpha sandwich fold GO:0000166|GO:0004812|GO:0004814|GO:0005524|GO:0005737|GO:0006418|GO:0006420 G3DSA:1.10.730.10|G3DSA:3.30.1360.70|G3DSA:3.40.50.620|MF_00123|PF00750|PF03485|PF05746|PR01038|PS00178|SM00836|SM01016|SSF47323|SSF52374|SSF55190|TIGR00456 AFA_00725 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006530|IPR018712|IPR022385 Domain of unknown function DUF2235|Rhs repeat-associated core|YD repeat GO:0097264 G3DSA:2.180.10.10|PF09994|TIGR01643|TIGR03696 AFA_00730 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014991 Protein of unknown function DUF1840 PF08895 AFA_00745 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015315|IPR035948 Protein of unknown function DUF1963|YwqG-like superfamily G3DSA:2.30.320.10|PF09234|SSF103032 AFA_00750 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000891|IPR002034|IPR005668|IPR013709|IPR013785|IPR036230 2-isopropylmalate synthase|2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain|2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily|Aldolase-type TIM barrel|Alpha-isopropylmalate/homocitrate synthase, conserved site|Pyruvate carboxyltransferase GO:0003824|GO:0003852|GO:0009098|GO:0019752|GO:0046912 G3DSA:3.20.20.70|G3DSA:3.30.160.270|MF_00572|PF00682|PF08502|PS00815|PS00816|SM00917|SSF110921|SSF51569|SSF89000|TIGR00970 AFA_00760 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000394|IPR007046|IPR007634|IPR038709 RNA polymerase sigma factor 54|RNA polymerase sigma factor 54, DNA-binding|RNA polymerase sigma factor 54, core-binding domain|RNA polymerase sigma-54 factor, core-binding domain superfamily GO:0001216|GO:0003677|GO:0006352|GO:0016987 G3DSA:1.10.10.1330|G3DSA:1.10.10.60|PF00309|PF04552|PF04963|PIRSF000774|PR00045|PS00717|PS00718|TIGR02395 AFA_00765 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR010105|IPR010917|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, conserved site|TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily|TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|PS01156|SSF56935|TIGR01783 AFA_00770 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000573|IPR004431|IPR015928 3-isopropylmalate dehydratase, small subunit|Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase/3-isopropylmalate dehydratase, swivel GO:0003861|GO:0009098|GO:0009316 G3DSA:3.20.19.10|MF_01031|PF00694|SSF52016|TIGR00171 AFA_00775 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001030|IPR004430|IPR015931|IPR018136|IPR036008 3-isopropylmalate dehydratase, large subunit|Aconitase family, 4Fe-4S cluster binding site|Aconitase, iron-sulfur domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0003861|GO:0009098|GO:0051539 G3DSA:3.30.499.10|G3DSA:3.30.499.20|MF_01026|PF00330|PR00415|PS00450|PS01244|SSF53732|TIGR00170 AFA_00780 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000891|IPR002034|IPR013785 Aldolase-type TIM barrel|Alpha-isopropylmalate/homocitrate synthase, conserved site|Pyruvate carboxyltransferase GO:0003824|GO:0019752|GO:0046912 G3DSA:3.20.20.70|PF00682|PS00815|SSF51569 AFA_00785 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 AFA_00790 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 AFA_00795 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_00800 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480 AFA_00805 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000868|IPR036380 Isochorismatase-like|Isochorismatase-like superfamily GO:0003824 G3DSA:3.40.50.850|PF00857|SSF52499 AFA_00810 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 AFA_00815 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007419 BFD-like [2Fe-2S]-binding domain G3DSA:1.10.10.1100|PF04324 AFA_00820 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002024|IPR008331|IPR009078|IPR012347 Bacterioferritin|Ferritin-like|Ferritin-like superfamily|Ferritin/DPS protein domain GO:0006826|GO:0006879|GO:0008199 G3DSA:1.20.1260.10|PF00210|PIRSF002560|PR00601|PS00549|SSF47240|TIGR00754 AFA_00830 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000795|IPR004161|IPR004548|IPR005225|IPR009000|IPR027417|IPR031157|IPR032090|IPR035647|IPR038467 EF-G domain III/V-like|P-loop containing nucleoside triphosphate hydrolase|Peptide chain release factor 3|Peptide chain release factor 3, C-terminal|Peptide chain release factor 3, C-terminal domain superfamily|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFTu-like, domain 2|Translation protein, beta-barrel domain superfamily GO:0003924|GO:0005525|GO:0005737|GO:0006415 G3DSA:3.30.70.3280|G3DSA:3.40.50.300|MF_00072|PF00009|PF03144|PF16658|PR00315|PS00301|SSF50447|SSF52540|SSF54980|TIGR00231|TIGR00503 AFA_00835 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 PF01810|PIRSF006324 AFA_00840 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000629|IPR001650|IPR011545|IPR014001|IPR027417 ATP-dependent RNA helicase DEAD-box, conserved site|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0003676|GO:0005524 G3DSA:3.40.50.300|PF00270|PF00271|PS00039|SM00487|SM00490|SSF52540 AFA_00845 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007156|IPR023353 LemA|LemA-like domain superfamily G3DSA:1.20.1440.20|PF04011|SSF140478 AFA_00850 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007621 TPM domain G3DSA:3.10.310.50|PF04536 AFA_00855 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007621 TPM domain G3DSA:3.10.310.50|PF04536 AFA_00860 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021296 Protein of unknown function DUF2868 PF11067 AFA_00865 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006073|IPR021871|IPR027417 GTP binding domain|P-loop containing nucleoside triphosphate hydrolase|Protein of unknown function DUF3482 GO:0005525 G3DSA:3.40.50.300|PF01926|PF11981|SSF52540 AFA_00870 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007438 Protein of unknown function DUF488 PF04343 AFA_00875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007341 Transglycosylase-associated protein GO:0016021 PF04226 AFA_00880 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004175|IPR009097 Cyclic phosphodiesterase|RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 G3DSA:3.90.1140.10|SSF55144|TIGR02258 AFA_00885 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_00895 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480 AFA_00900 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_00905 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PD968187|PF06808|PIRSF006066|TIGR00786 AFA_00910 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001258|IPR011042 NHL repeat|Six-bladed beta-propeller, TolB-like GO:0005515 G3DSA:2.120.10.30|PF01436|SSF63829 AFA_00915 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002645|IPR003453|IPR030802|IPR036513 ABC transport permease subunit MlaE, Proteobacteria|ABC transporter permease MalE|STAS domain|STAS domain superfamily GO:0043190 PF02405|PF13466|SSF52091|TIGR00056 AFA_00920 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_00925 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003399 Mce/MlaD PF02470 AFA_00930 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005586 ABC-type transport auxiliary lipoprotein component G3DSA:3.40.50.10610|PF03886|SSF159594 AFA_00940 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006439|IPR023198|IPR023214|IPR036412 HAD hydrolase, subfamily IA|HAD superfamily|HAD-like superfamily|Phosphoglycolate phosphatase-like, domain 2 GO:0016787 G3DSA:1.10.150.240|G3DSA:3.40.50.1000|PF13419|SSF56784|TIGR01509 AFA_00945 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480 AFA_00950 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_00955 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 AFA_00965 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002155|IPR016039 Thiolase|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PIRSF000429|SSF53901 AFA_00970 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 AFA_00975 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_00980 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002110|IPR036770 Ankyrin repeat|Ankyrin repeat-containing domain superfamily GO:0005515 G3DSA:1.25.40.20|PF00023|SM00248|SSF48403 AFA_00985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|SM00345|SM00895|SSF46785|SSF48008 AFA_00990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_00995 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006076|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905|SSF54373 AFA_01000 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002656 Acyltransferase 3 GO:0016747 PF01757 AFA_01005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003798 DNA recombination RmuC PF02646 AFA_01010 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000160|IPR001633|IPR001638|IPR013656|IPR029787|IPR035919|IPR035965 EAL domain|EAL domain superfamily|GGDEF domain|Nucleotide cyclase|PAS domain superfamily|PAS fold-4|Solute-binding protein family 3/N-terminal domain of MltF G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|G3DSA:3.40.190.10|PF00497|PF00563|PF00990|PF08448|SM00052|SM00062|SM00267|SSF141868|SSF53850|SSF55073|SSF55785|TIGR00254 AFA_01015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001792|IPR017968|IPR020456|IPR036046 Acylphosphatase|Acylphosphatase, conserved site|Acylphosphatase-like domain|Acylphosphatase-like domain superfamily GO:0003998 G3DSA:3.30.70.100|PF00708|PR00112|PS00150|SSF54975 AFA_01020 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001347|IPR009057|IPR036388 Homeobox-like domain superfamily|Sugar isomerase (SIS)|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0097367|GO:1901135 G3DSA:1.10.10.10|G3DSA:3.40.50.10490|PF01380|SSF46689|SSF53697 AFA_01025 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011852 TRAP transporter solute receptor, TAXI family G3DSA:3.40.190.10|PF16868|SSF53850|TIGR02122 AFA_01030 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010656|IPR011853|IPR021814 Protein of unknown function DUF3394|TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ PF06808|PF11874|TIGR02123 AFA_01035 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006145|IPR006224|IPR020103 Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.30.2350.10|PF00849|PS01129|SSF55120 AFA_01040 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004550|IPR006034|IPR020827|IPR027473|IPR027474|IPR027475|IPR036152|IPR037152 Asparaginase/glutaminase, active site 1|Asparaginase/glutaminase, active site 2|Asparaginase/glutaminase-like|Asparaginase/glutaminase-like superfamily|L-asparaginase, C-terminal|L-asparaginase, N-terminal|L-asparaginase, N-terminal domain superfamily|L-asparaginase, type II GO:0004067|GO:0006520|GO:0006528 G3DSA:3.40.50.1170|G3DSA:3.40.50.40|PF00710|PIRSF001220|PIRSF500176|PR00139|PS00144|PS00917|SM00870|SSF53774|TIGR00520 AFA_01045 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 AFA_01050 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 AFA_01055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001638 Solute-binding protein family 3/N-terminal domain of MltF G3DSA:3.40.190.10|PF00497|SM00062|SSF53850 AFA_01060 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540 AFA_01065 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006095|IPR006096|IPR006097|IPR014362|IPR033524|IPR036291 Glutamate dehydrogenase|Glutamate/phenylalanine/leucine/valine dehydrogenase|Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal|Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain|Leu/Phe/Val dehydrogenases active site|NAD(P)-binding domain superfamily GO:0006520|GO:0016491|GO:0016639|GO:0055114 G3DSA:1.10.8.1210|G3DSA:3.40.50.10860|G3DSA:3.40.50.720|PF00208|PF02812|PIRSF000185|PR00082|PS00074|SM00839|SSF51735|SSF53223 AFA_01070 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001608|IPR011078|IPR029066 Alanine racemase, N-terminal|PLP-binding barrel|Pyridoxal phosphate homeostasis protein GO:0030170 G3DSA:3.20.20.10|MF_02087|PF01168|PIRSF004848|SSF51419|TIGR00044 AFA_01075 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_01080 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000595|IPR012318|IPR014710|IPR018490|IPR036388|IPR036390 Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|SM00100|SSF46785|SSF51206 AFA_01085 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR020845 AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.40.50.12780|PF00501|PS00455|SSF56801 AFA_01090 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|SM00382|SSF52540 AFA_01095 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_01100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_01105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 AFA_01110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR027417 AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SM00382|SSF52540 AFA_01115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR028154 AMP-dependent ligase, C-terminal|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|PF00501|PF14535|SSF56801 AFA_01120 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001638 Solute-binding protein family 3/N-terminal domain of MltF G3DSA:3.40.190.10|PF00497|SM00062|SSF53850 AFA_01130 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000138|IPR000891|IPR013785 Aldolase-type TIM barrel|Hydroxymethylglutaryl-CoA lyase, active site|Pyruvate carboxyltransferase GO:0003824|GO:0004419 G3DSA:3.20.20.70|PF00682|PS01062|SSF51569 AFA_01135 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003488|IPR036388 DNA recombination-mediator protein A|Winged helix-like DNA-binding domain superfamily GO:0009294 G3DSA:1.10.10.10|G3DSA:3.40.50.450|PF02481|SSF102405|TIGR00732 AFA_01140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023635|IPR036821 Peptide deformylase|Peptide deformylase superfamily G3DSA:3.90.45.10|MF_00163|PF01327|PIRSF004749|PR01576|SSF56420|TIGR00079 AFA_01145 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001555|IPR002376|IPR005793|IPR005794|IPR011034|IPR036477|IPR037022 Formyl transferase, C-terminal|Formyl transferase, C-terminal domain superfamily|Formyl transferase, N-terminal|Formyl transferase, N-terminal domain superfamily|Formyl transferase-like, C-terminal domain superfamily|Methionyl-tRNA formyltransferase|Phosphoribosylglycinamide formyltransferase, active site GO:0003824|GO:0004479|GO:0009058|GO:0016742|GO:0071951 G3DSA:3.10.25.10|G3DSA:3.40.50.170|MF_00182|PF00551|PF02911|PS00373|SSF50486|SSF53328|TIGR00460 AFA_01150 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 AFA_01155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR020556|IPR023631|IPR036928 Amidase signature (AS) superfamily|Amidase signature domain|Amidase, conserved site G3DSA:3.90.1300.10|PF01425|PS00571|SSF75304 AFA_01160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021269 Protein of unknown function DUF2848 PF11010 AFA_01165 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 AFA_01170 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_01175 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480|SSF53850 AFA_01180 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009906|IPR016938|IPR038021 D-glutamate cyclase|Putative hydro-lyase|Uncharacterised protein family UPF0317 G3DSA:3.30.2040.10|G3DSA:3.40.1640.10|MF_01830|PF07286|PIRSF029755|SSF160920 AFA_01185 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_01190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002201|IPR011908 Glycosyl transferase, family 9|Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244|GO:0016757 G3DSA:3.40.50.2000|PF01075|SSF53756|TIGR02193 AFA_01195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007507|IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal|3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily G3DSA:3.40.50.11720|G3DSA:3.40.50.2000|PF04413|SSF53756 AFA_01200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002059|IPR011129|IPR012156|IPR012340|IPR019844 Cold shock domain|Cold shock, CspA|Cold-shock conserved site|Cold-shock protein, DNA-binding|Nucleic acid-binding, OB-fold GO:0003676|GO:0003677|GO:0006355 G3DSA:2.40.50.140|PF00313|PIRSF002599|PR00050|PS00352|SM00357|SSF50249 AFA_01205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005771|IPR005835|IPR029044 Nucleotide-diphospho-sugar transferases|Nucleotidyl transferase domain|UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011|GO:0009058|GO:0016779 G3DSA:3.90.550.10|PF00483|SSF53448|TIGR01099 AFA_01210 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004619 Type III pantothenate kinase GO:0004594 G3DSA:3.30.420.40|G3DSA:3.30.420.490|MF_01274|PF03309|SSF53067|TIGR00671 AFA_01215 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003142|IPR004143|IPR004408|IPR008988 Biotin protein ligase, C-terminal|Biotin--acetyl-CoA-carboxylase ligase|Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain|Transcriptional repressor, C-terminal GO:0004077|GO:0006464 G3DSA:2.30.30.100|G3DSA:3.30.930.10|PF02237|PF03099|SSF50037|SSF55681|TIGR00121 AFA_01220 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005645|IPR029058 Alpha/Beta hydrolase fold|Serine hydrolase FSH G3DSA:3.40.50.1820|PF03959|SSF53474 AFA_01225 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001967|IPR012338|IPR012907|IPR015956|IPR018044|IPR037167 Beta-lactamase/transpeptidase-like|D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily|Penicillin-binding protein, C-terminal domain superfamily|Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0004180|GO:0006508|GO:0009002 G3DSA:2.60.410.10|G3DSA:3.40.710.10|PF00768|PF07943|PR00725|SM00936|SSF56601|SSF69189 AFA_01230 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001544|IPR036038 Aminotransferase class IV|Aminotransferase-like, PLP-dependent enzymes GO:0003824 G3DSA:3.20.10.10|G3DSA:3.30.470.10|PF01063|SSF56752 AFA_01235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007454|IPR027471 Uncharacterised protein family UPF0250|YbeD-like domain superfamily G3DSA:3.30.70.260|MF_00659|PF04359|SSF117991 AFA_01240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000544|IPR004143|IPR020605 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain|Octanoyltransferase|Octanoyltransferase, conserved site GO:0006464|GO:0009249|GO:0033819 G3DSA:3.30.930.10|MF_00013|PD006086|PF03099|PIRSF016262|PS01313|SSF55681|TIGR00214 AFA_01245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001753|IPR014748|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|SSF52096 AFA_01250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003698|IPR006638|IPR007197|IPR013785|IPR031691 Aldolase-type TIM barrel|Elp3/MiaB/NifB|Lipoyl synthase|Lipoyl synthase, N-terminal|Radical SAM GO:0003824|GO:0009107|GO:0016992|GO:0051536|GO:0051539 G3DSA:3.20.20.70|MF_00206|PF04055|PF16881|PIRSF005963|SM00729|SSF102114|TIGR00510 AFA_01260 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002043|IPR005122|IPR036895 Uracil-DNA glycosylase family 1|Uracil-DNA glycosylase-like|Uracil-DNA glycosylase-like domain superfamily GO:0004844|GO:0006281|GO:0006284 G3DSA:3.40.470.10|MF_00148|PF03167|SM00986|SM00987|SSF52141|TIGR00628 AFA_01295 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000595|IPR012318|IPR014710|IPR018490|IPR036388|IPR036390 Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|SM00100|SM00419|SSF46785|SSF51206 AFA_01305 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018720|IPR036868 Domain of unknown function DUF2249|TusA-like domain superfamily PF10006|SSF64307 AFA_01310 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001539 Peptidase U32 GO:0006508|GO:0008233 PF01136|PS01276 AFA_01315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001539 Peptidase U32 GO:0006508|GO:0008233 PF01136 AFA_01320 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003033|IPR036527 SCP2 sterol-binding domain|SCP2 sterol-binding domain superfamily PF02036|SSF55718 AFA_01325 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007197|IPR012840|IPR013785 Aldolase-type TIM barrel|Anaerobic ribonucleoside-triphosphate reductase activating protein|Radical SAM GO:0003824|GO:0051536 G3DSA:3.20.20.70|PF04055|PF13353|SSF102114|TIGR02495 AFA_01330 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 PF13597 AFA_01335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 G3DSA:3.20.70.20|PF13597|SSF51998|TIGR02487 AFA_01340 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001310|IPR026026|IPR036265 HIT-like superfamily|Histidine triad (HIT) protein|Histidine triad hydrolase, Hint-type G3DSA:3.30.428.10|PF01230|PIRSF000714|SSF54197 AFA_01345 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001468|IPR011060|IPR013785|IPR013798 Aldolase-type TIM barrel|Indole-3-glycerol phosphate synthase|Indole-3-glycerol phosphate synthase, conserved site|Ribulose-phosphate binding barrel GO:0003824|GO:0004425|GO:0006568 G3DSA:3.20.20.70|MF_00134_B|PF00218|PS00614|SSF51366 AFA_01350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000312|IPR005940|IPR017459|IPR035902|IPR036320 Anthranilate phosphoribosyl transferase|Glycosyl transferase family 3, N-terminal domain|Glycosyl transferase family 3, N-terminal domain superfamily|Glycosyl transferase, family 3|Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily GO:0000162|GO:0004048|GO:0016757 G3DSA:1.20.970.10|G3DSA:3.40.1030.10|MF_00211|PF00591|PF02885|SSF47648|SSF52418|TIGR01245 AFA_01355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006221|IPR017926|IPR029062 Anthranilate synthase/para-aminobenzoate synthase like domain|Class I glutamine amidotransferase-like|Glutamine amidotransferase G3DSA:3.40.50.880|PF00117|PR00096|PR00097|PR00099|SSF52317|TIGR00566 AFA_01360 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005256|IPR005801|IPR006805|IPR015890|IPR019999 ADC synthase|Anthranilate synthase component I, N-terminal|Anthranilate synthase component I, PabB-like|Anthranilate synthase component I-like|Chorismate-utilising enzyme, C-terminal GO:0000162|GO:0004049|GO:0009058 G3DSA:3.60.120.10|PF00425|PF04715|PR00095|SSF56322|TIGR00564 AFA_01365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006346|IPR006439|IPR023198|IPR023214|IPR036412|IPR037512 2-phosphoglycolate phosphatase-like, prokaryotic|HAD hydrolase, subfamily IA|HAD superfamily|HAD-like superfamily|Phosphoglycolate phosphatase, prokaryotic|Phosphoglycolate phosphatase-like, domain 2 GO:0005975|GO:0008967|GO:0016787|GO:0016791 G3DSA:1.10.150.240|G3DSA:3.40.50.1000|MF_00495|PF13419|PR00413|SSF56784|TIGR01449|TIGR01509|TIGR01549 AFA_01370 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000160|IPR001633|IPR029787|IPR035919 EAL domain|EAL domain superfamily|GGDEF domain|Nucleotide cyclase G3DSA:3.20.20.450|G3DSA:3.30.70.270|PF00563|PF00990|SM00052|SM00267|SSF141868|SSF55073|TIGR00254 AFA_01375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000056|IPR011060|IPR013785|IPR026019 Aldolase-type TIM barrel|Ribulose-phosphate 3-epimerase|Ribulose-phosphate 3-epimerase-like|Ribulose-phosphate binding barrel GO:0003824|GO:0004750|GO:0005975|GO:0006098|GO:0016857 G3DSA:3.20.20.70|PF00834|PIRSF001461|PS01086|SSF51366|TIGR01163 AFA_01380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007474|IPR023065|IPR036767 ApaG domain|ApaG domain superfamily|Uncharacterised protein family ApaG G3DSA:2.60.40.1470|MF_00791|PF04379|SSF110069 AFA_01385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005300|IPR010611|IPR026044|IPR036908 3D domain|Lytic transglycosylase MltA, domain B|Membrane-bound lytic murein transglycosylase A|RlpA-like domain superfamily GO:0004553|GO:0009254|GO:0019867 G3DSA:2.40.240.50|G3DSA:2.40.40.10|PF03562|PF06725|PIRSF019422|SM00925|SSF50685 AFA_01390 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002938|IPR010971|IPR018168|IPR036188 FAD-binding domain|FAD/NAD(P)-binding domain superfamily|Ubiquinone biosynthesis hydroxylase UbiH/COQ6|Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0006744|GO:0016709|GO:0050660|GO:0055114|GO:0071949 G3DSA:3.30.9.50|G3DSA:3.50.50.60|PF01494|PR00420|PS01304|SSF51905|TIGR01988 AFA_01395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009094|IPR012336|IPR017937|IPR018950|IPR036249 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily|Disulphide bond isomerase, DsbC/G, N-terminal|Thioredoxin, conserved site|Thioredoxin-like fold|Thioredoxin-like superfamily GO:0042597|GO:0045454 G3DSA:3.40.30.10|PF10411|PF13098|PS00194|SSF52833|SSF54423 AFA_01400 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001633|IPR001867|IPR016032|IPR035919|IPR036388 EAL domain|EAL domain superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.20.20.450|PF00486|PF00563|SM00052|SM00862|SSF141868|SSF46894 AFA_01405 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004089|IPR004090|IPR033480 Chemotaxis methyl-accepting receptor|Methyl-accepting chemotaxis protein (MCP) signalling domain|Single Cache domain 2 GO:0004888|GO:0006935|GO:0007165|GO:0016020 G3DSA:1.10.287.950|G3DSA:3.30.450.20|PF00015|PF17200|PR00260|SM00283|SM01049|SSF58104 AFA_01410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000801|IPR013783|IPR014756|IPR021764|IPR029058 Alpha/Beta hydrolase fold|Enterochelin esterase, N-terminal|Immunoglobulin E-set|Immunoglobulin-like fold|Putative esterase GO:0005506|GO:0005737|GO:0006826|GO:0008849 G3DSA:2.60.40.10|G3DSA:3.40.50.1820|PF00756|PF11806|SSF53474|SSF81296 AFA_01415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR003560|IPR020904|IPR036291 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0008667|GO:0016491|GO:0019290|GO:0055114 G3DSA:3.40.50.720|PF13561|PR00080|PR01397|PS00061|SM00822|SSF51735|TIGR04316 AFA_01420 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000868|IPR016291|IPR036380 Isochorismatase|Isochorismatase-like|Isochorismatase-like superfamily GO:0003824|GO:0008908 G3DSA:3.40.50.850|PF00857|PIRSF001111|PR01398|SSF52499 AFA_01425 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004561|IPR005801|IPR015890 ADC synthase|Chorismate-utilising enzyme, C-terminal|Isochorismate synthase GO:0008909|GO:0009058 G3DSA:3.60.120.10|PF00425|SSF56322|TIGR00543 AFA_01430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011048|IPR013658|IPR015943 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily|SMP-30/Gluconolactonase/LRE-like region|WD40/YVTN repeat-like-containing domain superfamily GO:0005515 G3DSA:2.130.10.10|PF08450|SSF51004 AFA_01435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010290|IPR036259 MFS transporter superfamily|Transmembrane secretion effector G3DSA:1.20.1250.20|PF05977|SSF103473 AFA_01440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR001031|IPR001242|IPR009081|IPR010071|IPR020806|IPR020845|IPR023213|IPR025110|IPR029058|IPR036736 ACP-like superfamily|AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Alpha/Beta hydrolase fold|Amino acid adenylation domain|Chloramphenicol acetyltransferase-like domain superfamily|Condensation domain|Phosphopantetheine binding ACP domain|Polyketide synthase, phosphopantetheine-binding domain|Thioesterase GO:0003824|GO:0009058|GO:0016788|GO:0031177 G3DSA:3.30.300.30|G3DSA:3.30.559.10|G3DSA:3.30.559.30|G3DSA:3.40.50.12780|G3DSA:3.40.50.1820|PF00501|PF00550|PF00668|PF00975|PF13193|PS00455|SM00823|SSF47336|SSF52777|SSF53474|SSF56801|TIGR01733 AFA_01445 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009081|IPR036736 ACP-like superfamily|Phosphopantetheine binding ACP domain G3DSA:1.10.1200.10|PF00550|SSF47336 AFA_01450 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR011963|IPR020845|IPR025110 2,3-dihydroxybenzoate-AMP ligase|AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824|GO:0008668|GO:0019290 G3DSA:2.30.38.10|G3DSA:3.30.300.310|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|SSF56801|TIGR02275 AFA_01455 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008278|IPR037143 4'-phosphopantetheinyl transferase domain|4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 G3DSA:3.90.470.20|PF01648|SSF56214 AFA_01460 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_01465 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR027417 AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SM00382|SSF52540 AFA_01470 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_01475 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_01480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 AFA_01485 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR036388|IPR036390 MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF12802|PR00598|SM00347|SSF46785 AFA_01490 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_01495 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_01500 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_01505 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:1.10.8.450|G3DSA:3.40.190.10|PF12974|SSF53850 AFA_01510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006108|IPR006176|IPR008927|IPR013328|IPR022694|IPR036291 3-hydroxyacyl-CoA dehydrogenase|3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0003857|GO:0006631|GO:0016491|GO:0055114|GO:0070403 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF00725|PF02737|PIRSF000105|SSF48179|SSF51735 AFA_01515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003421|IPR008927|IPR011128|IPR013328|IPR036291 6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal|NAD(P)-binding domain superfamily|Opine dehydrogenase GO:0016491|GO:0016616|GO:0046168|GO:0050662|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF01210|PF02317|SSF48179|SSF51735 AFA_01520 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029058 Alpha/Beta hydrolase fold G3DSA:3.40.50.1820|SSF53474 AFA_01525 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002491 ABC transporter periplasmic binding domain G3DSA:3.40.50.1980|PF01497|SSF53807 AFA_01530 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_01535 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000522|IPR037294 ABC transporter, BtuC-like|ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 G3DSA:1.10.3470.10|PF01032|SSF81345 AFA_01540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR022742|IPR029058 Alpha/Beta hydrolase fold|Serine aminopeptidase, S33 G3DSA:3.40.50.1820|PF12146|SSF53474 AFA_01545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001650|IPR022192|IPR027417 Helicase, C-terminal|Mitochondrial degradasome RNA helicase subunit, C-terminal domain|P-loop containing nucleoside triphosphate hydrolase GO:0016817 G3DSA:3.40.50.300|PF00271|PF12513|SM00490|SSF52540 AFA_01550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004812|IPR011701|IPR036259 Drug resistance transporter Bcr/CmlA subfamily|MFS transporter superfamily|Major facilitator superfamily GO:0006855|GO:0015238|GO:0016021|GO:0055085 G3DSA:1.20.1720.10|PF07690|SSF103473|TIGR00710 AFA_01555 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006750 Putative inner membrane exporter, YdcZ PF04657 AFA_01560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_01565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006860|IPR012373|IPR032508|IPR032623 Fe(2+)-dicitrate sensor, transmembrane component|FecR protein|FecR, N-terminal|Protein FecR, C-terminal G3DSA:2.60.120.1440|G3DSA:3.55.50.30|PF04773|PF16220|PF16344|PIRSF018266 AFA_01570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000644|IPR005170|IPR005496|IPR016169|IPR036318 CBS domain|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|Integral membrane protein TerC|Transporter-associated domain GO:0016021|GO:0050660 G3DSA:3.10.580.10|G3DSA:3.30.465.10|PF00571|PF03471|PF03741|SM01091|SSF54631|SSF56176 AFA_01575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 PF04116 AFA_01580 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005804 Fatty acid desaturase domain GO:0006629 PF00487 AFA_01585 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013747|IPR013751|IPR016039|IPR016084 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III|3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal|Haem oxygenase-like, multi-helical|Thiolase-like GO:0003824|GO:0004315|GO:0006633 G3DSA:1.20.910.10|G3DSA:3.40.47.10|PF08541|PF08545|PF14518|SSF48613|SSF53901 AFA_01595 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001544|IPR036038 Aminotransferase class IV|Aminotransferase-like, PLP-dependent enzymes GO:0003824 G3DSA:3.20.10.10|G3DSA:3.30.470.10|PF01063|SSF56752 AFA_01600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007349 Domain of unknown function DUF418 PF04235 AFA_01605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001647|IPR009057|IPR036271|IPR039538 BetI-type transcriptional repressor, C-terminal|DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.357.10|PF00440|PF13977|SSF46689|SSF48498 AFA_01610 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF13673|SSF55729 AFA_01615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011234|IPR036663 Fumarylacetoacetase-like, C-terminal|Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 G3DSA:3.90.850.10|PF01557|SSF56529 AFA_01620 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 G3DSA:3.40.50.12500|PF01177 AFA_01625 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002563|IPR012349 FMN-binding split barrel|Flavin reductase like domain GO:0010181|GO:0048037 G3DSA:2.30.110.10|PF01613|SM00903|SSF50475 AFA_01630 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002933|IPR010158|IPR036264 Amidase, carbamoylase-type|Bacterial exopeptidase dimerisation domain|Peptidase M20 GO:0016787|GO:0016813 G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PIRSF001235|SSF53187|SSF55031|TIGR01879 AFA_01635 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006680|IPR011059|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain superfamily GO:0016787|GO:0016810 G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF01979|SSF51338|SSF51556 AFA_01640 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006680|IPR011059|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain superfamily GO:0016787|GO:0016810 G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF01979|SSF51338|SSF51556 AFA_01645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_01650 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_01655 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015168 SsuA/THI5-like G3DSA:3.40.190.10|PF09084|SSF53850 AFA_01660 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_01665 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001320|IPR001638 Ionotropic glutamate receptor|Solute-binding protein family 3/N-terminal domain of MltF GO:0004970|GO:0016020 G3DSA:3.40.190.10|PF00497|SM00062|SM00079|SSF53850 AFA_01670 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540 AFA_01675 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 AFA_01680 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 AFA_01685 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002220|IPR013785 Aldolase-type TIM barrel|DapA-like GO:0003824|GO:0016829 G3DSA:3.20.20.70|PF00701|PIRSF001365|PR00146|SM01130|SSF51569 AFA_01690 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008332|IPR014048|IPR023546|IPR036217|IPR036388|IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily|Methylated DNA-protein cysteine methyltransferase, DNA binding domain|Methylated-DNA--protein-cysteine methyltransferase|Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding|Methylguanine DNA methyltransferase, ribonuclease-like domain|Winged helix-like DNA-binding domain superfamily GO:0003824|GO:0003908|GO:0006281 G3DSA:1.10.10.10|G3DSA:3.30.160.70|MF_00772|PF01035|PF02870|SSF46767|SSF53155|TIGR00589 AFA_01695 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR029510 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|SSF53720 AFA_01700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025737 MetA-pathway of phenol degradation, putative PF13557 AFA_01705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009451|IPR011044|IPR015943 Amine dehydrogenase heavy chain|Quinoprotein amine dehydrogenase, beta chain-like|WD40/YVTN repeat-like-containing domain superfamily GO:0005515|GO:0030058|GO:0042597|GO:0055114 G3DSA:2.130.10.10|PF06433|SSF50969 AFA_01710 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009908 Methylamine utilisation protein, MauE GO:0016021|GO:0030416 PF07291 AFA_01715 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012336|IPR013478|IPR036249 Methylamine dehydrogenase accessory protein MauD|Thioredoxin-like fold|Thioredoxin-like superfamily GO:0030416 G3DSA:3.40.30.10|PF13098|SSF52833|TIGR02661 AFA_01720 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013504|IPR016008|IPR036560 Amine dehydrogenase light chain|Methylamine/Aralkylamine dehydrogenase light chain superfamily|Methylamine/Aralkylamine dehydrogenase light chain, C-terminal domain GO:0009308|GO:0016638|GO:0030058|GO:0042597|GO:0055114 G3DSA:2.60.30.10|PF02975|PIRSF000192|SSF57561 AFA_01725 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|SSF46626 AFA_01730 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009057|IPR018060|IPR018062|IPR020449|IPR035418 DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox-like domain superfamily|Transcription regulator HTH, AraC- type|Transcription regulator HTH, AraC- type, ligand binding domain-like GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12833|PF14525|PR00032|PS00041|SM00342|SSF46689 AFA_01735 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009057 Homeobox-like domain superfamily GO:0003677 G3DSA:1.10.10.60|SSF46689 AFA_01740 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000257|IPR006361|IPR038071 UROD/MetE-like superfamily|Uroporphyrinogen decarboxylase (URO-D)|Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 G3DSA:3.20.20.210|MF_00218|PF01208|PS00906|PS00907|SSF51726|TIGR01464 AFA_01745 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001650|IPR005259|IPR011545|IPR014001|IPR027417 DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Primosomal protein N' GO:0003676|GO:0003677|GO:0004003|GO:0005524|GO:0006260|GO:0032508 G3DSA:1.10.8.630|G3DSA:3.40.50.300|MF_00983|PF00270|PF00271|SM00487|SM00490|SSF52540|TIGR00595 AFA_01750 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005752|IPR013986|IPR014017|IPR027417|IPR034739 ATP-dependent DNA helicase Rep|DExx box DNA helicase domain superfamily|P-loop containing nucleoside triphosphate hydrolase|UvrD-like DNA helicase, C-terminal|UvrD/AddA helicase, N-terminal GO:0003677|GO:0004003|GO:0005524|GO:0006268|GO:0016787 G3DSA:1.10.10.160|G3DSA:1.10.486.10|G3DSA:3.40.50.300|MF_01920|PF00580|PF13361|SSF52540 AFA_01765 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006005|IPR009051|IPR023753|IPR028261|IPR036188 Alpha-helical ferredoxin|Dihydroprymidine dehydrogenase domain II|FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016491|GO:0016639|GO:0051536|GO:0055114 G3DSA:1.10.1060.10|G3DSA:3.50.50.60|PF07992|PF14691|PR00419|SSF46548|SSF51971|TIGR01317 AFA_01770 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002489|IPR002932|IPR006982|IPR013785|IPR017932|IPR029055|IPR036485 Aldolase-type TIM barrel|Glutamate synthase domain|Glutamate synthase, alpha subunit, C-terminal|Glutamate synthase, alpha subunit, C-terminal domain superfamily|Glutamate synthase, central-N|Glutamine amidotransferase type 2 domain|Nucleophile aminohydrolases, N-terminal GO:0003824|GO:0006537|GO:0006807|GO:0015930|GO:0016491|GO:0016638|GO:0055114 G3DSA:2.160.20.60|G3DSA:3.20.20.70|G3DSA:3.60.20.10|PF00310|PF01493|PF01645|PF04898|SSF51395|SSF56235|SSF69336 AFA_01775 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001753|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:3.90.226.10|PF00378|SSF52096 AFA_01780 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004136|IPR013785 Aldolase-type TIM barrel|Nitronate monooxygenase GO:0003824|GO:0018580|GO:0055114 G3DSA:3.20.20.70|PF03060|SSF51412 AFA_01785 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 AFA_01790 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006108|IPR006176|IPR008927|IPR036291 3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0003857|GO:0006631|GO:0016491|GO:0055114 G3DSA:1.10.1040.50|G3DSA:3.30.750.190|G3DSA:3.40.50.720|PF00725|PF02737|SSF48179|SSF51735 AFA_01795 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002323|IPR009056|IPR036909 Cytochrome c, class IE|Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0005506|GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF13442|PR00607|SSF46626 AFA_01805 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|SSF53335 AFA_01810 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935 AFA_01815 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006334|IPR007370|IPR014746 Glutamate--cysteine ligase|Glutamate--cysteine ligase, monofunctional|Glutamine synthetase/guanido kinase, catalytic domain GO:0003824|GO:0004357|GO:0006750 G3DSA:3.30.590.20|MF_00578|PF04262|SSF55931|TIGR01434 AFA_01825 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000792|IPR016032|IPR036388 Signal transduction response regulator, C-terminal effector|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF00196|PR00038|PS00622|SM00421|SSF46894 AFA_01830 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000073|IPR008220|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 G3DSA:1.10.1740.110|G3DSA:3.40.50.1820|MF_00296|PF00561|PIRSF000443|SSF53474|TIGR01392 AFA_01835 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010743|IPR029063 Methionine biosynthesis MetW|S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF07021|SSF53335|TIGR02081 AFA_01840 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_01845 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005115 Uncharacterised domain UPF0126 PF03458 AFA_01850 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007300 CidB/LrgB family PF04172 AFA_01855 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005538 LrgA/CidA family GO:0016021 PF03788 AFA_01860 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006175|IPR035959 RutC-like superfamily|YjgF/YER057c/UK114 family G3DSA:3.30.1330.40|PF01042|SSF55298 AFA_01865 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006175|IPR035959 RutC-like superfamily|YjgF/YER057c/UK114 family G3DSA:3.30.1330.40|PF01042|SSF55298 AFA_01870 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009163|IPR019200|IPR036265 ATP adenylyltransferase|ATP adenylyltransferase, C-terminal|HIT-like superfamily GO:0003877|GO:0005524|GO:0009117 G3DSA:3.30.428.70|PF09830|PIRSF000846|SSF54197 AFA_01875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR009057|IPR011006|IPR018060|IPR018062|IPR020449 CheY-like superfamily|DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox-like domain superfamily|Signal transduction response regulator, receiver domain|Transcription regulator HTH, AraC- type GO:0000160|GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:3.40.50.2300|PF00072|PF12833|PR00032|PS00041|SM00342|SM00448|SSF46689|SSF52172 AFA_01885 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001867|IPR016032|IPR036388 OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF00486|SM00862|SSF46894 AFA_01890 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001734|IPR038377 Sodium/glucose symporter superfamily|Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1730.10|PF00474 AFA_01900 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 PF01810|PIRSF006324 AFA_01905 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009000|IPR012947|IPR018163|IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal|Threonyl/alanyl tRNA synthetase, SAD|Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily|Translation protein, beta-barrel domain superfamily GO:0000166|GO:0004812|GO:0004813|GO:0005524|GO:0006419|GO:0043039 G3DSA:2.40.30.130|G3DSA:3.30.980.10|PF01411|PF07973|SSF50447|SSF55186 AFA_01910 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 AFA_01915 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003779|IPR029032 AhpD-like|Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 G3DSA:1.20.1290.10|PF02627|SSF69118 AFA_01920 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005814|IPR015421|IPR015422|IPR015424 Aminotransferase class-III|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0008483|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00202|PIRSF000521|PS00600|SSF53383 AFA_01925 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000281|IPR001347|IPR009057|IPR036388 Helix-turn-helix protein RpiR|Homeobox-like domain superfamily|Sugar isomerase (SIS)|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0097367|GO:1901135 G3DSA:1.10.10.10|G3DSA:3.40.50.10490|PF01380|PF01418|SSF46689|SSF53697 AFA_01930 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005079 Peptidase C45 G3DSA:1.10.10.2120|G3DSA:3.60.60.10|PF03417 AFA_01935 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016030|IPR029499|IPR036451 ATP:cob(I)alamin adenosyltransferase, PduO-type|Cobalamin adenosyltransferase-like|Cobalamin adenosyltransferase-like superfamily G3DSA:1.20.1200.10|PD007457|PF01923|SSF89028|TIGR00636 AFA_01940 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF00583|SSF55729 AFA_01945 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021647 Copper binding periplasmic protein CusF G3DSA:2.40.50.320|PF11604 AFA_01950 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003593|IPR003959|IPR004491|IPR019489|IPR027417 AAA+ ATPase domain|ATPase, AAA-type, core|Clp ATPase, C-terminal|Heat shock protein HslU|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 G3DSA:1.10.8.60|MF_00249|PF00004|PF07724|SM00382|SM01086|SSF52540|TIGR00390 AFA_01955 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001353|IPR022281|IPR029055 ATP-dependent protease, HslV subunit|Nucleophile aminohydrolases, N-terminal|Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0006508|GO:0009376|GO:0051603 G3DSA:3.60.20.10|MF_00248|PF00227|PIRSF039093|SSF56235|TIGR03692 AFA_01965 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000962|IPR012784|IPR020458|IPR037187 DksA, N-terminal domain superfamily|RNA polymerase-binding transcription factor DksA|Zinc finger, DksA/TraR C4-type|Zinc finger, DksA/TraR C4-type conserved site GO:0008270 G3DSA:1.20.120.910|MF_00926|PF01258|PS01102|SSF109635|SSF57716|TIGR02420 AFA_01970 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003495|IPR011629|IPR027417|IPR036627 CobW-like, C-terminal domain superfamily|CobW/HypB/UreG, nucleotide-binding domain|Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.30.1220.10|G3DSA:3.40.50.300|PF02492|PF07683|SM00833|SSF52540|SSF90002 AFA_01975 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002481|IPR036388|IPR036390 Ferric-uptake regulator|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.1490.190|PF01475|SSF46785 AFA_01980 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_01985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001626|IPR037294 ABC transporter, BtuC-like|ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 PF00950|SSF81345 AFA_01990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006127|IPR006128|IPR006129 Adhesin B|Adhesion lipoprotein|Periplasmic solute binding protein, ZnuA-like GO:0007155|GO:0030001|GO:0046872 G3DSA:3.40.50.1980|PF01297|PR00690|PR00691|SSF53807 AFA_01995 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002104|IPR004107|IPR010998|IPR011010|IPR013762|IPR023009 DNA breaking-rejoining enzyme, catalytic core|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal|Tyrosine recombinase XerC/XerD GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|MF_01808|PF00589|PF02899|SSF47823|SSF56349 AFA_02000 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007435|IPR029016 GAF-like domain superfamily|Protein of unknown function DUF484 G3DSA:3.30.450.40|PF04340|SSF55781 AFA_02005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001653|IPR018510 Diaminopimelate epimerase, DapF|Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 G3DSA:3.10.310.10|MF_00197|PF01678|PS01326|SSF54506|TIGR00652 AFA_02010 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 PF03279|PIRSF026649 AFA_02015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 PF03279|PIRSF026649 AFA_02020 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002133|IPR022628|IPR022629|IPR022630|IPR022631|IPR022636 S-adenosylmethionine synthetase|S-adenosylmethionine synthetase superfamily|S-adenosylmethionine synthetase, C-terminal|S-adenosylmethionine synthetase, N-terminal|S-adenosylmethionine synthetase, central domain|S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0005524|GO:0006556 G3DSA:3.30.300.10|MF_00086|PF00438|PF02772|PF02773|PIRSF000497|PS00376|PS00377|SSF55973|TIGR01034 AFA_02025 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000043|IPR015878|IPR020082|IPR034373|IPR036291 Adenosylhomocysteinase|Adenosylhomocysteinase-like|NAD(P)-binding domain superfamily|S-adenosyl-L-homocysteine hydrolase, NAD binding domain|S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0019510|GO:0051287 G3DSA:3.40.50.1480|G3DSA:3.40.50.720|MF_00563|PF00670|PF05221|PIRSF001109|PS00738|PS00739|SM00996|SM00997|SSF51735|SSF52283|TIGR00936 AFA_02030 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV PF04020 AFA_02035 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003171|IPR004620|IPR029041 5,10-methylenetetrahydrofolate reductase|FAD-linked oxidoreductase-like|Methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0006555|GO:0009086|GO:0055114 G3DSA:3.20.20.220|PF02219|SSF51730|TIGR00676 AFA_02040 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002698|IPR024185|IPR037171 5-formyltetrahydrofolate cyclo-ligase|5-formyltetrahydrofolate cyclo-ligase-like domain superfamily|NagB/RpiA transferase-like G3DSA:3.40.50.10420|PF01812|SSF100950|TIGR02727 AFA_02045 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008258|IPR008939|IPR012289|IPR023346 Lysozyme-like domain superfamily|Lytic transglycosylase, superhelical U-shaped|Lytic transglycosylase, superhelical linker|Transglycosylase SLT domain 1 GO:0004553|GO:0042597 G3DSA:1.10.530.10|G3DSA:1.25.20.10|PF01464|PF14718|SSF48435|SSF53955 AFA_02050 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002646|IPR012006|IPR032828 Poly A polymerase, head domain|tRNA nucleotidyltransferase, proteobacteria|tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain GO:0001680|GO:0003723|GO:0004810|GO:0005524|GO:0006396|GO:0016779 G3DSA:1.10.3090.10|G3DSA:3.30.460.10|PF01743|PF12627|PIRSF000813|SSF81301|SSF81891 AFA_02055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003788|IPR029063|IPR038375 Protein arginine methyltransferase NDUFAF7|Protein arginine methyltransferase NDUFAF7 superfamily|S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.12710|PF02636|SSF53335 AFA_02065 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF13649|SSF53335 AFA_02070 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002781 Transmembrane protein TauE-like GO:0016021 PF01925 AFA_02075 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015813|IPR018129|IPR021135|IPR022805|IPR033129 Phosphoenolpyruvate carboxylase|Phosphoenolpyruvate carboxylase, His active site|Phosphoenolpyruvate carboxylase, Lys active site|Phosphoenolpyruvate carboxylase, bacterial/plant-type|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824|GO:0006099|GO:0008964|GO:0015977 G3DSA:1.20.1440.90|MF_00595|PF00311|PR00150|PS00393|PS00781|SSF51621 AFA_02080 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000581|IPR004404|IPR020558|IPR037237 Dihydroxy-acid dehydratase|Dihydroxy-acid/6-phosphogluconate dehydratase|Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site|IlvD/EDD, N-terminal domain GO:0003824|GO:0004160|GO:0009082 G3DSA:3.50.30.80|MF_00012|PF00920|PS00886|PS00887|SSF143975|SSF52016|TIGR00110 AFA_02085 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011051|IPR014710|IPR025979 ChrR-like cupin domain|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF12973|SSF51182 AFA_02090 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004682|IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA|TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480|PIRSF006470|TIGR00787 AFA_02095 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_02100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 AFA_02105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023631|IPR036928 Amidase signature (AS) superfamily|Amidase signature domain G3DSA:3.90.1300.10|PF01425|SSF75304 AFA_02110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|SM00345|SM00895|SSF46785|SSF48008 AFA_02115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003694|IPR014729|IPR022310|IPR022926 NAD(+) synthetase|NAD/GMP synthase|NH(3)-dependent NAD(+) synthetase|Rossmann-like alpha/beta/alpha sandwich fold GO:0003952|GO:0005524|GO:0008795|GO:0009435 G3DSA:3.40.50.620|MF_00193|PF02540|SSF52402|TIGR00552 AFA_02120 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 AFA_02125 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00073|SSF47203|SSF56645 AFA_02130 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 AFA_02135 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_02140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011051|IPR013096|IPR014710 Cupin 2, conserved barrel|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF07883|SSF51182 AFA_02145 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002549 Transmembrane protein TqsA-like PF01594 AFA_02155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003356|IPR004546|IPR022749|IPR029063|IPR038333 DNA methylase, adenine-specific|N6 adenine-specific DNA methyltransferase, N-terminal domain|N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily|Restriction endonuclease, type I, HsdM|S-adenosyl-L-methionine-dependent methyltransferase GO:0003677|GO:0006306|GO:0008170|GO:0009007|GO:0009307 G3DSA:1.20.1260.30|G3DSA:3.40.50.150|PF02384|PF12161|PR00507|SSF53335|TIGR00497 AFA_02160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 G3DSA:1.10.287.1120|G3DSA:3.90.220.20|PF01420|SSF116734 AFA_02165 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004473|IPR006935|IPR007409|IPR014001|IPR021810|IPR027417 Helicase superfamily 1/2, ATP-binding domain|Helicase/UvrB, N-terminal|P-loop containing nucleoside triphosphate hydrolase|Protein of unknown function DUF3387|Restriction endonuclease, type I, HsdR|Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0005524|GO:0006304|GO:0009035|GO:0009307|GO:0016787 G3DSA:3.40.50.300|G3DSA:3.90.1570.50|PF04313|PF04851|PF11867|SM00487|SSF52540|TIGR00348 AFA_02170 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002725 Protein of unknown function DUF45 G3DSA:3.30.2010.10|PF01863 AFA_02175 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007560|IPR011335|IPR016984 Restriction endonuclease type II-like|Restriction endonuclease type IV, Mrr|Uncharacterised conserved protein UCP031853 GO:0003677|GO:0004519|GO:0009307 PF04471|PIRSF031853|SSF52980 AFA_02180 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003370|IPR014047 Chromate transporter|Chromate transporter, long chain GO:0015109|GO:0015703 PF02417|PIRSF004810|TIGR00937 AFA_02185 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000917|IPR017849|IPR017850 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain superfamily|Sulfatase, N-terminal GO:0003824|GO:0008484 G3DSA:3.40.720.10|PF00884|SSF53649 AFA_02190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_02195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR036388|IPR036390 MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01047|PR00598|SM00347|SSF46785 AFA_02200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001041|IPR001221|IPR001433|IPR001709|IPR006058|IPR008333|IPR012675|IPR017938|IPR036010|IPR039261 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Flavoprotein pyridine nucleotide cytochrome reductase|Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain|Oxidoreductase FAD/NAD(P)-binding|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel GO:0009055|GO:0016491|GO:0051536|GO:0051537|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00111|PF00175|PF00970|PR00371|PR00410|PS00197|SSF52343|SSF54292|SSF63380 AFA_02205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF00583|SSF55729 AFA_02210 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006094|IPR012256|IPR015409|IPR016164|IPR016167|IPR016169|IPR016172|IPR016173|IPR036318 D-lactate dehydrogenase|D-lactate dehydrogenase, C-terminal subdomain 1|D-lactate dehydrogenase, C-terminal subdomain 2|D-lactate dehydrogenase, membrane binding, C-terminal|FAD linked oxidase, N-terminal|FAD-binding, type PCMH, subdomain 1|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|FAD-linked oxidase-like, C-terminal GO:0003824|GO:0005887|GO:0006089|GO:0016491|GO:0016901|GO:0019516|GO:0022904|GO:0050660|GO:0055085|GO:0055114 G3DSA:3.30.1370.20|G3DSA:3.30.43.10|G3DSA:3.30.465.10|G3DSA:3.30.70.610|MF_02092|PF01565|PF09330|PIRSF000101|SSF55103|SSF56176 AFA_02215 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000262|IPR008259|IPR012133|IPR013785|IPR020920 Aldolase-type TIM barrel|Alpha-hydroxy acid dehydrogenase, FMN-dependent|FMN-dependent alpha-hydroxy acid dehydrogenase, active site|FMN-dependent dehydrogenase|L-lactate dehydrogenase, bacterial GO:0003824|GO:0004457|GO:0006089|GO:0010181|GO:0016491|GO:0055114 G3DSA:3.20.20.70|MF_01559|PF01070|PIRSF000138|PS00557|SSF51395 AFA_02220 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|SM00345|SM00895|SSF46785|SSF48008 AFA_02225 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 PF02652|TIGR00795 AFA_02230 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023393 START-like domain superfamily G3DSA:3.30.530.20 AFA_02235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR011663|IPR028978|IPR036388|IPR036390 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|SM00345|SM00866|SSF46785|SSF64288 AFA_02240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000485|IPR011008|IPR019885|IPR019887|IPR019888|IPR036388|IPR036390 AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Transcription regulator HTH, AsnC-type, conserved site|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13412|PR00033|PS00519|SM00344|SSF46785|SSF54909 AFA_02245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000192|IPR010111|IPR015421|IPR015422|IPR015424 Aminotransferase class V domain|Kynureninase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_01970|PF00266|PIRSF038800|SSF53383|TIGR01814 AFA_02250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002293|IPR004840|IPR004841 Amino acid permease, conserved site|Amino acid permease/ SLC12A domain|Amino acid/polyamine transporter I GO:0006865|GO:0016020|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1740.10|PF00324|PIRSF006060|PS00218 AFA_02255 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011059|IPR013108|IPR032466 Amidohydrolase 3|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain superfamily GO:0016810 G3DSA:2.30.40.10|G3DSA:3.10.310.70|G3DSA:3.20.20.140|PF07969|SSF51338|SSF51556 AFA_02260 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001034|IPR014036|IPR018356|IPR036388|IPR036390|IPR037171 DeoR C-terminal sensor domain|DeoR-type HTH domain|NagB/RpiA transferase-like|Transcription regulator, HTH DeoR-type, conserved site|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0005622|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.750.70|PF00455|PF08220|PR00037|PS00894|SM00420|SM01134|SSF100950|SSF46785 AFA_02265 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR008995|IPR013611|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 2 GO:0005524|GO:0016887|GO:0022857|GO:0043190|GO:0055085 G3DSA:2.40.50.100|G3DSA:2.40.50.140|G3DSA:3.40.50.300|PF00005|PF08402|PS00211|SM00382|SSF50331|SSF52540 AFA_02270 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006059 Bacterial extracellular solute-binding protein G3DSA:3.40.190.10|PF13416|SSF53850 AFA_02275 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_02280 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_02285 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004843|IPR026575|IPR029052 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA|Calcineurin-like phosphoesterase domain, ApaH type|Metallo-dependent phosphatase-like GO:0004115|GO:0016787 G3DSA:3.60.21.10|MF_00905|PF00149|SSF56300 AFA_02295 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005496|IPR022301 Integral membrane protein TerC|Integral membrane protein YjbE GO:0016021 PF03741|TIGR03717 AFA_02300 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site G3DSA:3.10.50.40|PF13616|PS01096|SSF54534 AFA_02310 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003791 Protein of unknown function UPF0178 MF_00489|PF02639 AFA_02315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 G3DSA:1.10.287.1080|PF12643|PIRSF029826|SSF101386 AFA_02320 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003607|IPR006674 HD domain|HD/PDEase domain G3DSA:1.10.3210.50|PF01966|SM00471|SSF109604 AFA_02325 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_02330 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013341|IPR013342|IPR018110|IPR029017|IPR029065|IPR036849 Enolase C-terminal domain-like|Enolase-like, C-terminal domain superfamily|Enolase-like, N-terminal|Mandelate racemase/muconate lactonizing enzyme, C-terminal|Mandelate racemase/muconate lactonizing enzyme, N-terminal domain|Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 G3DSA:3.20.20.120|G3DSA:3.30.390.10|PF02746|PF13378|PS00908|SM00922|SSF51604|SSF54826 AFA_02335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002942|IPR025708|IPR036986 Heat shock protein 15|RNA-binding S4 domain|RNA-binding S4 domain superfamily GO:0003677|GO:0003723|GO:0003727|GO:0034605|GO:0043023 G3DSA:3.10.290.10|PF01479|PIRSF016821|SM00363|SSF55174 AFA_02340 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004638|IPR011701|IPR036259 Drug resistance transporter EmrB/QacA subfamily|MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1250.20|G3DSA:1.20.1720.10|PF07690|SSF103473|TIGR00711 AFA_02345 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001647|IPR009057|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.357.10|PF00440|PR00455|SSF46689|SSF48498 AFA_02350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013112|IPR013130|IPR017938|IPR039261 FAD-binding 8|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Ferric reductase transmembrane component-like domain|Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.40.50.80|PF01794|PF08022|SSF52343|SSF63380 AFA_02355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023631|IPR036928 Amidase signature (AS) superfamily|Amidase signature domain G3DSA:3.90.1300.10|PF01425|SSF75304 AFA_02360 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_02365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_02370 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009057|IPR018060|IPR032783 AraC-type transcription regulator, ligand-binding domain|DNA binding HTH domain, AraC-type|Homeobox-like domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12833|PF12852|SM00342|SSF46689 AFA_02375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003779|IPR004675|IPR029032 AhpD-like|Alkylhydroperoxidase AhpD core|Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 G3DSA:1.20.1290.10|PF02627|SSF69118|TIGR00778 AFA_02380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011008|IPR014910 Dimeric alpha-beta barrel|Putative monooxygenase YdhR G3DSA:3.30.70.100|PF08803|SSF54909 AFA_02385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 G3DSA:1.10.3730.20|PF00892|SSF103481 AFA_02390 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001404|IPR003594|IPR019805|IPR020568|IPR020575|IPR036890|IPR037196 HSP90, C-terminal domain|Heat shock protein Hsp90 family|Heat shock protein Hsp90, N-terminal|Heat shock protein Hsp90, conserved site|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Ribosomal protein S5 domain 2-type fold GO:0005524|GO:0006457|GO:0051082 G3DSA:1.20.120.790|G3DSA:3.30.230.80|G3DSA:3.30.565.10|G3DSA:3.40.50.11260|MF_00505|PF00183|PF02518|PIRSF002583|PR00775|PS00298|SM00387|SSF110942|SSF54211|SSF55874 AFA_02395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR010105|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily|TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935|TIGR01783 AFA_02400 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005123|IPR006620|IPR023550 Oxoglutarate/iron-dependent dioxygenase|PKHD-type hydroxylase|Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016491|GO:0016705|GO:0016706|GO:0031418|GO:0055114 G3DSA:2.60.120.620|G3DSA:4.10.860.20|MF_00657|PF13640|SM00702|SSF51197 AFA_02405 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000262|IPR012133|IPR013785 Aldolase-type TIM barrel|Alpha-hydroxy acid dehydrogenase, FMN-dependent|FMN-dependent dehydrogenase GO:0003824|GO:0010181|GO:0016491|GO:0055114 G3DSA:3.20.20.70|PF01070|PIRSF000138|SSF51395 AFA_02410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002502|IPR036505 N-acetylmuramoyl-L-alanine amidase domain|N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 G3DSA:3.40.80.10|PF01510|SM00644|SSF55846 AFA_02420 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 PF01578 AFA_02425 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000897|IPR003593|IPR004125|IPR004780|IPR013822|IPR022941|IPR027417|IPR036891 AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase|Signal recognition particle protein Ffh|Signal recognition particle, SRP54 subunit|Signal recognition particle, SRP54 subunit, GTPase domain|Signal recognition particle, SRP54 subunit, M-domain|Signal recognition particle, SRP54 subunit, M-domain superfamily|Signal recognition particle, SRP54 subunit, helical bundle GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500 G3DSA:1.10.260.30|G3DSA:1.20.120.140|G3DSA:3.40.50.300|MF_00306|PF00448|PF02881|PF02978|PS00300|SM00382|SM00962|SM00963|SSF47446|SSF52540|TIGR00959 AFA_02435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007055|IPR018392|IPR036779 BON domain|LysM domain|LysM domain superfamily G3DSA:3.10.350.10|PF01476|PF04972|SM00257|SSF54106 AFA_02440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003749|IPR010035|IPR012675|IPR016155 Beta-grasp domain superfamily|Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp|Sulfur carrier ThiS/MoaD-like|ThiS, thiamine-biosynthesis G3DSA:3.10.20.30|PF02597|SSF54285|TIGR01683 AFA_02445 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000073|IPR002410|IPR005944|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Peptidase S33|Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508|GO:0008233 G3DSA:3.40.50.1820|PF00561|PIRSF006431|PR00793|SSF53474|TIGR01249 AFA_02450 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003358|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 G3DSA:3.40.50.150|MF_01057|PF02390|SSF53335|TIGR00091 AFA_02470 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002763|IPR036520 Protein of unknown function DUF72|UPF0759 superfamily G3DSA:3.20.20.410|PF01904|SSF117396 AFA_02480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 AFA_02485 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00081|SSF51735 AFA_02490 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 AFA_02495 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 PF01699 AFA_02500 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR009057|IPR011006|IPR018060|IPR018062|IPR020449 CheY-like superfamily|DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox-like domain superfamily|Signal transduction response regulator, receiver domain|Transcription regulator HTH, AraC- type GO:0000160|GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:3.40.50.2300|PF00072|PF12833|PR00032|PS00041|SM00342|SM00448|SSF46689|SSF52172 AFA_02505 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001853|IPR014440|IPR036249 DSBA-like thioredoxin domain|HCCA isomerase/glutathione S-transferase kappa|Thioredoxin-like superfamily GO:0015035 G3DSA:3.40.30.10|PF01323|PIRSF006386|SSF52833 AFA_02510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005828|IPR036259 MFS transporter superfamily|Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1250.20|PF00083|SSF103473 AFA_02515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001303|IPR036409 Class II aldolase/adducin N-terminal|Class II aldolase/adducin N-terminal domain superfamily G3DSA:3.40.225.10|PF00596|SM01007|SSF53639 AFA_02520 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR014871|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain|dUTPase/dCTP pyrophosphatase G3DSA:1.10.4010.10|G3DSA:3.40.630.30|PF08761|PF13302|SSF101386|SSF55729 AFA_02525 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011044|IPR015943 Quinoprotein amine dehydrogenase, beta chain-like|WD40/YVTN repeat-like-containing domain superfamily GO:0005515 G3DSA:2.130.10.10|SSF50969 AFA_02530 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002125|IPR016192|IPR016193 APOBEC/CMP deaminase, zinc-binding|Cytidine and deoxycytidylate deaminase domain|Cytidine deaminase-like GO:0003824|GO:0008270|GO:0016787 G3DSA:3.40.140.10|PF00383|PS00903|SSF53927 AFA_02535 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011051|IPR013096|IPR014710|IPR017627 Conserved hypothetical protein CHP03214, putative allantoin-urate catabolism protein|Cupin 2, conserved barrel|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF07883|SSF51182|TIGR03214 AFA_02540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_02545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002524|IPR027469|IPR027470|IPR036837 Cation efflux protein|Cation efflux protein, cytoplasmic domain|Cation efflux protein, cytoplasmic domain superfamily|Cation efflux transmembrane domain superfamily GO:0006812|GO:0008324|GO:0016021|GO:0055085 G3DSA:1.20.1510.10|G3DSA:3.30.70.1350|PF01545|PF16916|SSF160240|SSF161111|TIGR01297 AFA_02550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001412|IPR002547|IPR004495|IPR009080|IPR012340|IPR014729|IPR014758|IPR015413|IPR023458|IPR029038|IPR033911 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Methionine-tRNA ligase, type 1|Methioninyl-tRNA synthetase core domain|Methionyl-tRNA synthetase|Methionyl-tRNA synthetase, Zn-domain|Methionyl-tRNA synthetase, beta subunit, C-terminal|Methionyl/Leucyl tRNA synthetase|Nucleic acid-binding, OB-fold|Rossmann-like alpha/beta/alpha sandwich fold|tRNA-binding domain GO:0000049|GO:0000166|GO:0004812|GO:0004825|GO:0005524|GO:0005737|GO:0006418|GO:0006431 G3DSA:1.10.730.10|G3DSA:2.20.28.20|G3DSA:2.40.50.140|G3DSA:3.40.50.620|MF_00098|PF01588|PF09334|PR01041|PS00178|SSF47323|SSF50249|SSF52374|SSF57770|TIGR00398|TIGR00399 AFA_02560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000808|IPR019591|IPR027417|IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35|Mrp, conserved site|Mrp/NBP35 ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|MF_02040|PF10609|PS01215|SSF52540 AFA_02565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000184|IPR035243 Bacterial surface antigen (D15)|TamA, POTRA domain 1 GO:0019867 G3DSA:2.40.160.50|G3DSA:3.10.20.310|PF01103|PF17243 AFA_02570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007452 Translocation and assembly module TamB PF04357 AFA_02575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011962|IPR029054|IPR036157 dCTP deaminase|dUTPase-like|dUTPase-like superfamily GO:0006229|GO:0008829 G3DSA:2.70.40.10|MF_00146|PF00692|SSF51283|TIGR02274 AFA_02580 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000310|IPR005308|IPR008286|IPR011193|IPR015421|IPR015422|IPR015424|IPR036633 Orn/Lys/Arg decarboxylase, C-terminal|Orn/Lys/Arg decarboxylase, C-terminal domain superfamily|Orn/Lys/Arg decarboxylase, N-terminal|Orn/Lys/Arg decarboxylase, major domain|Ornithine/lysine/arginine decarboxylase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0005737|GO:0006520|GO:0016831 G3DSA:3.40.50.2300|G3DSA:3.40.640.10|G3DSA:3.90.100.10|G3DSA:3.90.1150.10|PF01276|PF03709|PF03711|PIRSF009393|PS00703|SSF53383|SSF55904 AFA_02585 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004792|IPR023166|IPR036188 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like|FAD/NAD(P)-binding domain superfamily|HI0933-like insert domain superfamily G3DSA:1.10.8.260|G3DSA:2.40.30.10|G3DSA:3.50.50.60|PF03486|PR00368|PR00411|SSF160996|SSF51905|TIGR00275 AFA_02590 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002930|IPR003016|IPR011053|IPR017453|IPR033753 2-oxo acid dehydrogenase, lipoyl-binding site|Glycine cleavage system H-protein|Glycine cleavage system H-protein, subgroup|Glycine cleavage system H-protein/Simiate|Single hybrid motif GO:0005960|GO:0019464 G3DSA:2.40.50.100|MF_00272|PF01597|PS00189|SSF51230|TIGR00527 AFA_02595 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001796|IPR012259|IPR017925|IPR024072 Dihydrofolate reductase|Dihydrofolate reductase conserved site|Dihydrofolate reductase domain|Dihydrofolate reductase-like domain superfamily GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 G3DSA:3.40.430.10|PF00186|PIRSF000194|PR00070|PS00075|SSF53597 AFA_02600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000398|IPR020940|IPR023451|IPR036926 Thymidylate synthase|Thymidylate synthase, active site|Thymidylate synthase/dCMP hydroxymethylase domain|Thymidylate synthase/dCMP hydroxymethylase superfamily GO:0004799|GO:0006231 G3DSA:3.30.572.10|MF_00008|PF00303|PR00108|PS00091|SSF55831|TIGR03284 AFA_02605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003718|IPR015946|IPR036102 K homology domain-like, alpha/beta|OsmC/Ohr family|OsmC/Ohr superfamily G3DSA:3.30.300.20|PF02566|SSF82784 AFA_02610 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000883|IPR036927 Cytochrome c oxidase subunit I|Cytochrome c oxidase-like, subunit I superfamily GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 G3DSA:1.20.210.10|PF00115|SSF81442 AFA_02615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003468|IPR036909 Cytochrome c oxidase, monohaem subunit/FixO|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF02433|SSF46626 AFA_02620 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008168|IPR009056|IPR036909 Cytochrome c, class IC|Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0005506|GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF13442|PR00605|SSF46626 AFA_02625 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003782|IPR036249 Copper chaperone SCO1/SenC|Thioredoxin-like superfamily G3DSA:3.40.30.10|PF02630|SSF52833 AFA_02635 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009078|IPR011566|IPR012347 Ferritin-like|Ferritin-like superfamily|Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 G3DSA:1.20.1260.10|MF_01658|PF03232|SSF47240 AFA_02640 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001697|IPR011037|IPR015793|IPR015795|IPR015806|IPR015813|IPR018209|IPR036918 Pyruvate kinase|Pyruvate kinase, C-terminal|Pyruvate kinase, C-terminal domain superfamily|Pyruvate kinase, active site|Pyruvate kinase, barrel|Pyruvate kinase, insert domain superfamily|Pyruvate kinase-like, insert domain superfamily|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0000287|GO:0003824|GO:0004743|GO:0006096|GO:0030955 G3DSA:2.40.33.10|G3DSA:3.20.20.60|G3DSA:3.40.1380.20|PF00224|PF02887|PR01050|PS00110|SSF50800|SSF51621|SSF52935|TIGR01064 AFA_02645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005624|IPR038084 GlcG-like domain superfamily|Haem-degrading G3DSA:3.30.450.150|PF03928|SSF143744 AFA_02650 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007835|IPR025286|IPR037035|IPR038614 Glycerate kinase, N-terminal domain superfamily|Glycerate kinase-like, C-terminal domain superfamily|MOFRL domain|MOFRL-associated domain G3DSA:3.40.1480.10|G3DSA:3.40.50.10180|PF05161|PF13660|SSF82544 AFA_02655 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002204|IPR006115|IPR006398|IPR008927|IPR013328|IPR015815|IPR029154|IPR036291 2-hydroxy-3-oxopropionate reductase|3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|3-hydroxyisobutyrate dehydrogenase-related, conserved site|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0008679|GO:0016491|GO:0046487|GO:0050661|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|PS00895|SSF48179|SSF51735|TIGR01505 AFA_02660 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013022|IPR017643|IPR026040|IPR036237 Hydroxypyruvate isomerase|Hydroxypyruvate isomerase-like|Xylose isomerase-like superfamily|Xylose isomerase-like, TIM barrel domain G3DSA:3.20.20.150|PF01261|PIRSF006241|SSF51658|TIGR03234 AFA_02665 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006397|IPR011766|IPR012000|IPR012001|IPR029035|IPR029061 DHS-like NAD/FAD-binding domain superfamily|Glyoxylate carboligase|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain|Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0003824|GO:0009028|GO:0009436|GO:0030976 G3DSA:3.40.50.1220|G3DSA:3.40.50.970|PF00205|PF02775|PF02776|SSF52467|SSF52518|TIGR01504 AFA_02670 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 AFA_02675 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 G3DSA:2.40.230.20|SSF111364 AFA_02680 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006042|IPR006043|IPR017588 Uric acid permease UacT-like|Xanthine/uracil permease|Xanthine/uracil/vitamin C permease GO:0005215|GO:0016020|GO:0016021|GO:0022857|GO:0055085 PF00860|TIGR00801|TIGR03173 AFA_02685 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004370|IPR014347 4-oxalocrotonate tautomerase|Tautomerase/MIF superfamily GO:0006725|GO:0016853 G3DSA:3.30.429.10|PF01361|SSF55331 AFA_02690 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001303|IPR036409 Class II aldolase/adducin N-terminal|Class II aldolase/adducin N-terminal domain superfamily G3DSA:3.40.225.10|PF00596|SM01007|SSF53639 AFA_02695 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007247|IPR011051|IPR024060 RmlC-like cupin domain superfamily|Ureidoglycolate lyase|Ureidoglycolate lyase domain superfamily GO:0000256|GO:0004848|GO:0050385 G3DSA:2.60.120.480|PF04115|PIRSF017306|SSF51182 AFA_02700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017580|IPR018020|IPR036778 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1|Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase|Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily GO:0019428 G3DSA:1.10.3330.10|PF09349|SSF158694|TIGR03164 AFA_02705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_02710 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 PF00953 AFA_02715 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001732|IPR008927|IPR014026|IPR014027|IPR017476|IPR028359|IPR036220|IPR036291 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily|UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase|UDP-glucose/GDP-mannose dehydrogenase|UDP-glucose/GDP-mannose dehydrogenase, C-terminal|UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily|UDP-glucose/GDP-mannose dehydrogenase, N-terminal|UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0000271|GO:0016616|GO:0016628|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF00984|PF03720|PF03721|PIRSF000124|PIRSF500136|SM00984|SSF48179|SSF51735|SSF52413|TIGR03026 AFA_02720 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001509|IPR036291 NAD(P)-binding domain superfamily|NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF01370|PR01713|SSF51735 AFA_02725 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004268 Peptidoglycan biosynthesis protein MurJ PF03023 AFA_02730 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001296|IPR028098 Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF00534|PF13439|SSF53756 AFA_02735 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001296|IPR028098 Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF00534|PF13439|SSF53756 AFA_02740 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001296|IPR028098 Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF00534|PF13439|PF13477|SSF53756 AFA_02745 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005841|IPR005843|IPR005844|IPR005845|IPR005846|IPR016055|IPR016066|IPR036900 Alpha-D-phosphohexomutase superfamily|Alpha-D-phosphohexomutase, C-terminal|Alpha-D-phosphohexomutase, C-terminal domain superfamily|Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III|Alpha-D-phosphohexomutase, alpha/beta/alpha domain I|Alpha-D-phosphohexomutase, alpha/beta/alpha domain II|Alpha-D-phosphohexomutase, alpha/beta/alpha domain III|Alpha-D-phosphohexomutase, conserved site GO:0000287|GO:0005975|GO:0016868|GO:0071704 G3DSA:3.30.310.50|G3DSA:3.40.120.10|PF00408|PF02878|PF02879|PF02880|PR00509|PS00710|SSF53738|SSF55957 AFA_02750 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004113|IPR006094|IPR016164|IPR016167|IPR016169|IPR016171|IPR036318 FAD linked oxidase, N-terminal|FAD-binding, type PCMH, subdomain 1|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|FAD-linked oxidase, C-terminal|FAD-linked oxidase-like, C-terminal|Vanillyl-alcohol oxidase, C-terminal subdomain 2 GO:0003824|GO:0016491|GO:0050660|GO:0055114 G3DSA:1.10.45.10|G3DSA:3.30.43.10|G3DSA:3.30.465.10|G3DSA:3.30.70.2190|G3DSA:3.30.70.2740|PF01565|PF02913|SSF55103|SSF56176 AFA_02755 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000326|IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase|Phosphatidic acid phosphatase type 2/haloperoxidase superfamily G3DSA:1.20.144.10|PF01569|SSF48317 AFA_02760 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005959|IPR011234|IPR015377|IPR036462|IPR036663 Fumarylacetoacetase|Fumarylacetoacetase, N-terminal|Fumarylacetoacetase, N-terminal domain superfamily|Fumarylacetoacetase-like, C-terminal|Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824|GO:0004334|GO:0009072 G3DSA:2.30.30.230|G3DSA:3.90.850.10|PF01557|PF09298|SSF56529|SSF63433|TIGR01266 AFA_02765 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005708|IPR011051|IPR014710|IPR022950 Homogentisate 1,2-dioxygenase|Homogentisate 1,2-dioxygenase, bacterial|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold GO:0004411|GO:0006559|GO:0006570|GO:0006572|GO:0055114 G3DSA:2.60.120.10|MF_00334|PF04209|SSF51182|TIGR01015 AFA_02770 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021233 Protein of unknown function DUF2783 PF10932 AFA_02775 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002938|IPR036188 FAD-binding domain|FAD/NAD(P)-binding domain superfamily GO:0071949 G3DSA:3.30.70.2450|G3DSA:3.40.30.120|G3DSA:3.50.50.60|PF01494|PR00420|SSF51905 AFA_02780 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001279|IPR036866 Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like G3DSA:3.60.15.10|PF00753|SM00849|SSF56281 AFA_02785 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010663|IPR010979|IPR012319|IPR015886|IPR020629|IPR035937 DNA glycosylase/AP lyase, H2TH DNA-binding|Formamidopyrimidine-DNA glycosylase|Formamidopyrimidine-DNA glycosylase, catalytic domain|MutM-like, N-terminal|Ribosomal protein S13-like, H2TH|Zinc finger, FPG/IleRS-type GO:0003676|GO:0003684|GO:0003906|GO:0006281|GO:0006284|GO:0006289|GO:0008270|GO:0008534|GO:0016799 G3DSA:1.10.8.50|G3DSA:3.20.190.10|MF_00103|PF01149|PF06827|PF06831|SM00898|SM01232|SSF46946|SSF57716|SSF81624|TIGR00577 AFA_02790 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011990|IPR019734 Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|PF13424|PF13432|PF14559|SM00028|SSF48452 AFA_02795 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004565|IPR029046 Lipoprotein localisation LolA/LolB/LppX|Outer membrane lipoprotein LolB GO:0009279|GO:0015031 G3DSA:2.50.20.10|PF03550|SSF89392 AFA_02800 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004424|IPR006204|IPR013750|IPR014721|IPR020568|IPR036554 4-diphosphocytidyl-2C-methyl-D-erythritol kinase|GHMP kinase N-terminal domain|GHMP kinase, C-terminal domain|GHMP kinase, C-terminal domain superfamily|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0005524|GO:0016114|GO:0050515 G3DSA:3.30.230.10|G3DSA:3.30.70.890|MF_00061|PF00288|PF08544|PIRSF010376|SSF54211|SSF55060|TIGR00154 AFA_02810 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000842|IPR005946|IPR029057|IPR029099|IPR037515 Phosphoribosyl pyrophosphate synthetase, conserved site|Phosphoribosyltransferase-like|Ribose-phosphate pyrophosphokinase|Ribose-phosphate pyrophosphokinase, N-terminal domain|Ribose-phosphate pyrophosphokinase, bacterial-type GO:0000287|GO:0004749|GO:0009156|GO:0009165|GO:0044249 G3DSA:3.40.50.2020|MF_00583_B|PF13793|PF14572|PS00114|SM01400|SSF53271|TIGR01251 AFA_02815 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001021|IPR011035|IPR020055|IPR020056|IPR020057|IPR029751|IPR037121 Ribosomal protein L25|Ribosomal protein L25, C-terminal|Ribosomal protein L25, beta domain|Ribosomal protein L25, long-form|Ribosomal protein L25, short-form|Ribosomal protein L25/Gln-tRNA synthetase, N-terminal|Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0008097 G3DSA:2.170.120.20|G3DSA:2.40.240.10|MF_01334|MF_01336|PD012503|PF01386|PF14693|SSF50715|TIGR00731 AFA_02820 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001328|IPR018171|IPR036416 Peptidyl-tRNA hydrolase|Peptidyl-tRNA hydrolase superfamily|Peptidyl-tRNA hydrolase, conserved site GO:0004045 G3DSA:3.40.50.1470|MF_00083|PF01195|PS01195|PS01196|SSF53178|TIGR00447 AFA_02825 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003675 CAAX amino terminal protease GO:0016020 PF02517 AFA_02830 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004396|IPR006073|IPR012675|IPR012676|IPR013029|IPR023192|IPR027417 Beta-grasp domain superfamily|GTP binding domain|P-loop containing nucleoside triphosphate hydrolase|Ribosome-binding ATPase YchF/Obg-like ATPase 1|TGS-like|TGS-like domain superfamily|YchF, C-terminal domain GO:0005525 G3DSA:1.10.150.300|G3DSA:3.10.20.30|G3DSA:3.40.50.300|MF_00944|PF01926|PF06071|PIRSF006641|PR00326|SSF52540|SSF81271|TIGR00092 AFA_02835 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005534 Curli production assembly/transport component CsgG GO:0030288 G3DSA:3.40.50.10610|PF03783|SSF52964 AFA_02840 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014508 Uncharacterised conserved protein withTPR-like repeats PF16068|PIRSF020555 AFA_02845 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008517 Protein of unknown function DUF799 G3DSA:3.40.50.10610|PF05643 AFA_02850 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003313|IPR009057|IPR011051|IPR014710|IPR018060|IPR020449 AraC-type arabinose-binding/dimerisation domain|DNA binding HTH domain, AraC-type|Homeobox-like domain superfamily|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold|Transcription regulator HTH, AraC- type GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:2.60.120.10|PF02311|PF12833|PR00032|SM00342|SSF46689|SSF51182 AFA_02855 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 AFA_02860 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_02865 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR036249 Thioredoxin-like superfamily G3DSA:1.10.472.60|G3DSA:3.40.30.10|PF13743|SSF52833 AFA_02870 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001765|IPR015892|IPR036874 Carbonic anhydrase|Carbonic anhydrase superfamily|Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 G3DSA:3.40.1050.10|PF00484|PS00704|PS00705|SM00947|SSF53056 AFA_02875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_02880 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007247|IPR011051|IPR024060 RmlC-like cupin domain superfamily|Ureidoglycolate lyase|Ureidoglycolate lyase domain superfamily GO:0000256|GO:0004848|GO:0050385 G3DSA:2.60.120.480|PF04115|SSF51182 AFA_02885 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR005895|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter, haem export, CcmA|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005215|GO:0005524|GO:0016887|GO:0017004 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR01189 AFA_02890 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003544|IPR026031 Cytochrome c-type biogenesis protein CcmB|Cytochrome c-type biogenesis protein CcmB, bacteria GO:0015232|GO:0015886|GO:0016020|GO:0017004 PF03379|PIRSF002764|PR01414|TIGR01190 AFA_02895 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002541|IPR003557 Cytochrome c assembly protein|Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004|GO:0020037 PF01578|PR01386|TIGR01191 AFA_02900 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 PF04995|TIGR03141 AFA_02905 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004329|IPR036127 CcmE-like superfamily|CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 G3DSA:2.40.50.140|MF_01959|PF03100|SSF82093 AFA_02910 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002541|IPR003567|IPR003568|IPR032523 Cytochrome c assembly protein|Cytochrome c-type biogenesis protein|Cytochrome c-type biogenesis protein CcmF|Cytochrome c-type biogenesis protein CcmF, C-terminal GO:0015232|GO:0015886|GO:0016020|GO:0017004|GO:0020037 PF01578|PF16327|PR01410|PR01411|TIGR00353 AFA_02915 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004799|IPR013740|IPR036249 Periplasmic protein thiol:disulphide oxidoreductase DsbE|Redoxin|Thioredoxin-like superfamily GO:0015036|GO:0016491|GO:0017004|GO:0030288 G3DSA:3.40.30.10|PF08534|SSF52833|TIGR00385 AFA_02920 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005616|IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily|CcmH/CycL/Ccl2/NrfF family G3DSA:1.10.8.640|PF03918 AFA_02925 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011990|IPR017560|IPR019734 Cytochrome c-type biogenesis protein CcmI|Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|SM00028|SSF48452|TIGR03142 AFA_02930 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 PF02683 AFA_02935 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00080|PR00081|SM00822|SSF51735 AFA_02940 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001497|IPR004026|IPR008332|IPR009057|IPR014048|IPR016221|IPR018060|IPR035451|IPR036217|IPR036388|IPR036631 Ada DNA repair, metal-binding|Ada-like domain superfamily|Bifunctional regulatory protein Ada|DNA binding HTH domain, AraC-type|Homeobox-like domain superfamily|Methylated DNA-protein cysteine methyltransferase domain superfamily|Methylated DNA-protein cysteine methyltransferase, DNA binding domain|Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding|Methylated-DNA-[protein]-cysteine S-methyltransferase, active site|Methylguanine DNA methyltransferase, ribonuclease-like domain|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0003824|GO:0003908|GO:0006281|GO:0006355|GO:0008168|GO:0008270|GO:0043565 G3DSA:1.10.10.10|G3DSA:1.10.10.60|G3DSA:3.30.160.70|G3DSA:3.40.10.10|PF01035|PF02805|PF02870|PF12833|PIRSF000409|PS00374|SM00342|SSF46689|SSF46767|SSF53155|SSF57884|TIGR00589 AFA_02945 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006121|IPR036163 Heavy metal-associated domain superfamily|Heavy metal-associated domain, HMA GO:0030001|GO:0046872 G3DSA:3.30.70.100|PF00403|SSF55008 AFA_02950 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR036501 Inhibitor of vertebrate lysozyme superfamily G3DSA:3.40.1420.10|PF08816|SSF89872 AFA_02955 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 AFA_02960 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_02965 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_02970 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|SM00382|SSF52540 AFA_02975 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_02980 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004852|IPR009056|IPR026259|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily|Di-c-type haem protein, MauG/cytochrome c peroxidase|Di-haem cytochrome c peroxidase GO:0009055|GO:0016491|GO:0020037|GO:0055114 G3DSA:1.10.760.10|PF00034|PF03150|PIRSF000294|SSF46626 AFA_02985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006139|IPR006140|IPR029752|IPR029753|IPR036291 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain superfamily GO:0016616|GO:0051287|GO:0055114 G3DSA:3.30.70.260|G3DSA:3.40.50.720|PF00389|PF02826|PS00065|PS00670|PS00671|SSF51735|SSF52283|SSF55021 AFA_02990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000944|IPR036388|IPR036390 Transcription regulator Rrf2-type|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily G3DSA:1.10.10.10|PF02082|SSF46785|TIGR00738 AFA_02995 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001486|IPR009050|IPR012292 Globin-like superfamily|Globin/Protoglobin|Truncated hemoglobin GO:0019825|GO:0020037 G3DSA:1.10.490.10|PF01152|SSF46458 AFA_03000 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001173|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF00535|SSF53448 AFA_03005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR038731 Glycosyltransferase RgtA/B/C/D-like PF13231 AFA_03010 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007267 GtrA-like protein GO:0000271|GO:0016021 PF04138 AFA_03015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006879|IPR011330 Carbohydrate deacetylase YdjC-like|Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 G3DSA:3.20.20.370|PF04794|SSF88713 AFA_03020 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005939|IPR029021 Beta-lactamase hydrolase-like|Protein-tyrosine phosphatase-like GO:0016787 G3DSA:3.90.190.10|PF04273|TIGR01244 AFA_03025 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006015|IPR006016|IPR014729 Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA G3DSA:3.40.50.620|PF00582|PIRSF006276|PR01438|SSF52402 AFA_03030 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021074 Formate dehydrogenase, delta subunit PF11390 AFA_03035 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003786|IPR016193 Cytidine deaminase-like|Sulfur carrier protein FdhD GO:0003824|GO:0016783 G3DSA:3.10.20.10|G3DSA:3.40.140.10|MF_00187|PF02634|PIRSF015626|SSF53927|TIGR00129 AFA_03040 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006478|IPR006656|IPR006657|IPR006963|IPR009010|IPR017896|IPR017900|IPR019574|IPR036010 2Fe-2S ferredoxin-like superfamily|4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Aspartate decarboxylase-like domain superfamily|Formate dehydrogenase, alpha subunit|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, 4Fe-4S domain|NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0008863|GO:0009055|GO:0015942|GO:0016491|GO:0043546|GO:0051536|GO:0055114 G3DSA:2.20.25.90|G3DSA:2.40.40.20|G3DSA:3.10.20.740|G3DSA:3.30.70.20|G3DSA:3.40.228.10|G3DSA:3.40.50.740|PF00384|PF01568|PF04879|PF10588|PF13187|PF13510|PIRSF036643|PS00198|SM00926|SM00929|SSF50692|SSF53706|SSF54292|SSF54862|TIGR01591 AFA_03045 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001949|IPR011538|IPR019575|IPR036249|IPR037207|IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain|NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily|NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain|NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily|NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site|Thioredoxin-like superfamily GO:0008137|GO:0010181|GO:0051539|GO:0055114 G3DSA:1.20.1440.230|G3DSA:3.10.20.600|G3DSA:3.40.50.11540|PF01512|PF10589|PS00645|SM00928|SSF140490|SSF142019|SSF142984|SSF52833 AFA_03050 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002023|IPR036249 NADH-quinone oxidoreductase subunit E-like|Thioredoxin-like superfamily GO:0016491|GO:0055114 G3DSA:1.10.10.1590|G3DSA:3.40.30.10|PF01257|PIRSF000216|SSF52833 AFA_03055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR024370|IPR036388|IPR036390 PBP domain|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF12727|SSF46785|SSF53850 AFA_03060 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000385|IPR006638|IPR007197|IPR010505|IPR013483|IPR013785 Aldolase-type TIM barrel|Elp3/MiaB/NifB|MoaA/nifB/pqqE, iron-sulphur binding, conserved site|Molybdenum cofactor biosynthesis protein A|Molybdenum cofactor synthesis C-terminal|Radical SAM GO:0003824|GO:0006777|GO:0019008|GO:0046872|GO:0051536|GO:0051539 G3DSA:3.20.20.70|MF_01225_B|PF04055|PF06463|PF13353|PS01305|SM00729|SSF102114|TIGR02666 AFA_03065 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013482|IPR025877|IPR029044 MobA-like NTP transferase|Molybdenum cofactor guanylyltransferase|Nucleotide-diphospho-sugar transferases GO:0003824|GO:0006777 G3DSA:3.90.550.10|MF_00316|PF12804|SSF53448|TIGR02665 AFA_03070 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001453|IPR005110|IPR005111|IPR008284|IPR036135|IPR036425|IPR036688 MoaB/Mog domain|MoaB/Mog-like domain superfamily|MoeA, C-terminal, domain IV|MoeA, C-terminal, domain IV superfamily|MoeA, N-terminal and linker domain|MoeA, N-terminal and linker domain superfamily|Molybdenum cofactor biosynthesis, conserved site GO:0006777|GO:0032324 G3DSA:2.170.190.11|G3DSA:2.40.340.10|G3DSA:3.40.980.10|G3DSA:3.90.105.10|PF00994|PF03453|PF03454|PS01079|SM00852|SSF53218|SSF63867|SSF63882|TIGR00177 AFA_03075 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001453|IPR012245|IPR013484|IPR036425 MoaB/Mog domain|MoaB/Mog-like domain superfamily|Molybdenum cofactor biosynthesis protein B, proteobacteria|Molybdenum cofactor biosynthesis protein MoaB GO:0006777 G3DSA:3.40.980.10|PF00994|PIRSF006443|SM00852|SSF53218|TIGR00177|TIGR02667 AFA_03080 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003448|IPR036563 Molybdopterin biosynthesis MoaE|Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 G3DSA:3.90.1170.40|PF02391|SSF54690 AFA_03085 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003749|IPR012675|IPR016155 Beta-grasp domain superfamily|Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp|Sulfur carrier ThiS/MoaD-like G3DSA:3.10.20.30|PF02597|SSF54285|TIGR01682 AFA_03090 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002820|IPR023045|IPR036522 Molybdenum cofactor biosynthesis C|Molybdopterin cofactor biosynthesis C (MoaC) domain|Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 G3DSA:3.30.70.640|MF_01224_B|PF01967|SSF55040|TIGR00581 AFA_03095 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000792|IPR001789|IPR011006|IPR014284|IPR016032|IPR036388 CheY-like superfamily|RNA polymerase sigma-70 like domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0003700|GO:0006352|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172|TIGR02937 AFA_03100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000014|IPR001610|IPR003594|IPR003661|IPR004358|IPR013767|IPR035965|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAC motif|PAS domain|PAS domain superfamily|PAS fold|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0006355|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF00989|PF02518|PR00344|SM00086|SM00091|SM00387|SM00388|SSF47384|SSF55785|SSF55874|TIGR00229 AFA_03105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004682|IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA|TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480|PIRSF006470|TIGR00787 AFA_03110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_03115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 AFA_03120 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013740|IPR036249 Redoxin|Thioredoxin-like superfamily GO:0016491 G3DSA:3.40.30.10|PF08534|SSF52833 AFA_03125 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005828|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1250.20|PF00083|PF07690|SSF103473 AFA_03130 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic SSF103481 AFA_03135 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002684|IPR006638|IPR007197|IPR010722|IPR013785|IPR024177 Aldolase-type TIM barrel|Biotin and thiamin synthesis-associated domain|Biotin synthase|Biotin synthase/Biotin biosynthesis bifunctional protein BioAB|Elp3/MiaB/NifB|Radical SAM GO:0003824|GO:0004076|GO:0009102|GO:0051536 G3DSA:3.20.20.70|MF_01694|PF04055|PF06968|PIRSF001619|SM00729|SM00876|SSF102114|TIGR00433 AFA_03140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006683|IPR029069 HotDog domain superfamily|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637 AFA_03145 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021710 Protein of unknown function DUF3293 PF11697 AFA_03150 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001036|IPR027463 Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866 AFA_03155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369|TIGR01730 AFA_03160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001647|IPR009057|IPR023772|IPR036271 DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PS01081|SSF46689|SSF48498 AFA_03195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000014|IPR000160|IPR001610|IPR001633|IPR029787|IPR035919|IPR035965 EAL domain|EAL domain superfamily|GGDEF domain|Nucleotide cyclase|PAC motif|PAS domain|PAS domain superfamily G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00990|PF13426|SM00052|SM00086|SM00091|SM00267|SSF141868|SSF55073|SSF55785|TIGR00229|TIGR00254 AFA_03200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003010|IPR004563|IPR036526 Apolipoprotein N-acyltransferase|Carbon-nitrogen hydrolase|Carbon-nitrogen hydrolase superfamily GO:0006807|GO:0016021|GO:0016410|GO:0042158 G3DSA:3.60.110.10|MF_01148|PF00795|SSF56317|TIGR00546 AFA_03205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000644|IPR005170|IPR016169|IPR036318 CBS domain|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|Transporter-associated domain GO:0050660 G3DSA:3.10.580.10|G3DSA:3.30.465.10|PF00571|PF03471|SM01091|SSF54631|SSF56176 AFA_03210 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002036|IPR023091 Endoribonuclease YbeY|Metalloprotease catalytic domain superfamily, predicted GO:0004222|GO:0006364 G3DSA:3.40.390.30|MF_00009|PF02130|SSF55486|TIGR00043 AFA_03215 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003714|IPR027417 P-loop containing nucleoside triphosphate hydrolase|PhoH-like protein GO:0005524 G3DSA:3.40.50.300|PF02562|SSF52540 AFA_03220 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002792|IPR005839|IPR006463|IPR006638|IPR007197|IPR013848|IPR020612|IPR023404|IPR038135 Elp3/MiaB/NifB|Methylthiotransferase|Methylthiotransferase, N-terminal|Methylthiotransferase, N-terminal domain superfamily|Methylthiotransferase, conserved site|Radical SAM|Radical SAM, alpha/beta horseshoe|TRAM domain|tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0003824|GO:0005737|GO:0006400|GO:0016740|GO:0051536|GO:0051539 G3DSA:3.40.50.12160|G3DSA:3.80.30.20|MF_01864|PF00919|PF01938|PF04055|PS01278|SM00729|SSF102114|TIGR00089|TIGR01574 AFA_03225 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021831 ParD-like antitoxin of type II bacterial toxin-antitoxin system PF11903 AFA_03230 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000994|IPR001714|IPR002467|IPR036005 Creatinase/aminopeptidase-like|Peptidase M24|Peptidase M24, methionine aminopeptidase|Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 G3DSA:3.90.230.10|MF_01974|PF00557|PR00599|PS00680|SSF55920|TIGR00500 AFA_03235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005665|IPR022645|IPR022646|IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial|Protein-export membrane protein SecD/SecF, bacterial|Protein-export membrane protein SecD/SecF/SecDF, conserved site|Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 G3DSA:1.20.1640.10|MF_01464_B|PF02355|PF07549|PR01755|SSF82866|TIGR00916|TIGR00966 AFA_03240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005791|IPR022645|IPR022646|IPR022813|IPR027398 Protein translocase subunit SecD|Protein-export membrane protein SecD/SecF, archaeal and bacterial|Protein-export membrane protein SecD/SecF, bacterial|Protein-export membrane protein SecD/SecF/SecDF, conserved site|SecD export protein N-terminal TM domain GO:0006886|GO:0015450 G3DSA:1.20.1640.10|G3DSA:3.30.1360.200|G3DSA:3.30.70.3400|MF_01463_B|PF02355|PF07549|PF13721|SSF82866|TIGR00916|TIGR01129 AFA_03245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003849 Preprotein translocase YajC PF02699|PR01853|SM01323|TIGR00739 AFA_03250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002616|IPR004803|IPR036511 Queuine tRNA-ribosyltransferase-like|tRNA-guanine transglycosylase|tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0016763|GO:0101030 G3DSA:3.20.20.105|MF_00168|PF01702|SSF51713|TIGR00430|TIGR00449 AFA_03255 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003699|IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA|S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 G3DSA:2.40.10.240|G3DSA:3.40.1780.10|MF_00113|PF02547|SSF111337|TIGR00113 AFA_03260 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000667|IPR012338 Beta-lactamase/transpeptidase-like|Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 G3DSA:3.40.710.10|G3DSA:3.50.80.20|PF02113|PR00922|SSF56601|TIGR00666 AFA_03265 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005765|IPR029057|IPR034332 Phosphoribosyltransferase-like|Uracil phosphoribosyl transferase|Uracil phosphoribosyltransferase, bacterial-type GO:0004845|GO:0006223 G3DSA:3.40.50.2020|MF_01218_B|PF14681|SSF53271|TIGR01091 AFA_03270 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:2.40.360.20 AFA_03275 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 PF05957 AFA_03280 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009937 Putative Actinobacterial Holin-X, holin superfamily III PF07332 AFA_03290 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_03295 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001663|IPR015879|IPR017941|IPR036922 Aromatic-ring-hydroxylating dioxygenase, alpha subunit|Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain|Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0005506|GO:0016491|GO:0044237|GO:0051537|GO:0055114 G3DSA:2.102.10.10|G3DSA:3.90.380.10|PF00355|PF00848|PR00090|SSF50022|SSF55961 AFA_03300 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000951|IPR001041|IPR001433|IPR006058|IPR008333|IPR012675|IPR017938|IPR036010|IPR039261 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain|Oxidoreductase FAD/NAD(P)-binding|Phthalate dioxygenase reductase|Riboflavin synthase-like beta-barrel GO:0009055|GO:0016491|GO:0051536|GO:0051537|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00111|PF00175|PF00970|PR00409|PS00197|SSF52343|SSF54292|SSF63380 AFA_03305 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001509|IPR036291 NAD(P)-binding domain superfamily|NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 G3DSA:3.40.50.720|PF01370|SSF51735 AFA_03315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009499|IPR024033 Protein of unknown function DUF1116|Uncharacterised domain superfamily, YlbE G3DSA:1.10.10.660|G3DSA:3.90.1700.10|G3DSA:3.90.1710.10|PF06545 AFA_03320 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023631|IPR036928 Amidase signature (AS) superfamily|Amidase signature domain G3DSA:3.90.1300.10|PF01425|SSF75304 AFA_03330 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005828|IPR005829|IPR036259 MFS transporter superfamily|Major facilitator, sugar transporter-like|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1250.20|PF00083|PS00216|PS00217|SSF103473 AFA_03335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_03340 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004360|IPR004361|IPR018146|IPR029068 Glyoxalase I|Glyoxalase I, conserved site|Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain GO:0004462|GO:0046872 G3DSA:3.10.180.10|PF00903|PS00934|SSF54593|TIGR00068 AFA_03345 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002830|IPR023677 UbiD decarboxylyase family|UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694|GO:0016831 G3DSA:1.20.5.570|G3DSA:3.40.1670.10|MF_01636|PF01977|SSF143968|SSF50475|TIGR00148 AFA_03350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008258|IPR023346 Lysozyme-like domain superfamily|Transglycosylase SLT domain 1 G3DSA:1.10.530.10|PF01464|SSF53955 AFA_03355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004839|IPR015421|IPR015424 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|PF00155|PR00753|SSF53383 AFA_03365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002505|IPR012188|IPR012301|IPR012302|IPR036291|IPR037062 Malic enzyme, N-terminal domain|Malic enzyme, N-terminal domain superfamily|Malic enzyme, NAD-binding|NAD(P)-binding domain superfamily|NAD(P)-dependent malic enzyme|Phosphate acetyl/butaryl transferase GO:0004470|GO:0004471|GO:0006108|GO:0016746|GO:0046872|GO:0051287|GO:0055114 G3DSA:3.40.50.10380|G3DSA:3.40.50.10750|G3DSA:3.40.50.10950|G3DSA:3.40.50.720|PF00390|PF01515|PF03949|PIRSF036684|SM00919|SM01274|SSF51735|SSF53223|SSF53659 AFA_03370 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002641|IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase|Patatin-like phospholipase domain GO:0006629 G3DSA:3.40.1090.10|PF01734|SSF52151 AFA_03375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000468|IPR035905 Barstar (barnase inhibitor)|Barstar-like superfamily G3DSA:3.30.370.10|PF01337|SSF52038 AFA_03380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006700|IPR015947|IPR029026|IPR029028 Alpha/beta knot methyltransferases|PUA-like superfamily|Ribosomal RNA small subunit methyltransferase E|tRNA (guanine-N1-)-methyltransferase, N-terminal GO:0006364|GO:0008168 G3DSA:2.40.240.20|G3DSA:3.40.1280.10|PF04452|PIRSF015601|SSF75217|SSF88697|TIGR00046 AFA_03385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005474|IPR005475|IPR005478|IPR009014|IPR029061|IPR033248 Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase, C-terminal domain|Transketolase, N-terminal|Transketolase, bacterial-like|Transketolase-like, pyrimidine-binding domain GO:0003824|GO:0004802 G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF00456|PF02779|PF02780|PS00801|SM00861|SSF52518|SSF52922|TIGR00232 AFA_03390 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006424|IPR020828|IPR020829|IPR020830|IPR020831|IPR036291 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain|Glyceraldehyde 3-phosphate dehydrogenase, active site|Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain|Glyceraldehyde-3-phosphate dehydrogenase, type I|Glyceraldehyde/Erythrose phosphate dehydrogenase family|NAD(P)-binding domain superfamily GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF00044|PF02800|PIRSF000149|PR00078|PS00071|SM00846|SSF51735|SSF55347|TIGR01534 AFA_03395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001576|IPR015824|IPR015911|IPR036043 Phosphoglycerate kinase|Phosphoglycerate kinase superfamily|Phosphoglycerate kinase, N-terminal|Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 G3DSA:3.40.50.1260|MF_00145|PF00162|PIRSF000724|PR00477|PS00111|SSF53748 AFA_03400 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010985|IPR031807|IPR035069 HicB-like antitoxin of toxin-antitoxin system|Ribbon-helix-helix|TTHA1013/TTHA0281-like GO:0006355 G3DSA:3.30.160.250|PF15919|SSF143100|SSF47598 AFA_03405 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001509|IPR036291 NAD(P)-binding domain superfamily|NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 G3DSA:3.40.50.720|PF01370|SSF51735 AFA_03410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR029510 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|SSF53720 AFA_03415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735 AFA_03420 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001453|IPR008284|IPR036425 MoaB/Mog domain|MoaB/Mog-like domain superfamily|Molybdenum cofactor biosynthesis, conserved site GO:0006777 G3DSA:3.40.980.10|PF00994|PS01078|SM00852|SSF53218|TIGR00177 AFA_03425 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000771|IPR006412|IPR013785 Aldolase-type TIM barrel|Fructose-bisphosphate aldolase, class II, Calvin cycle subtype|Fructose-bisphosphate aldolase, class-II GO:0003824|GO:0004332|GO:0005975|GO:0006096|GO:0008270|GO:0016832 G3DSA:3.20.20.70|PF01116|PIRSF001359|PS00602|PS00806|SSF51569|TIGR00167|TIGR01521 AFA_03430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001636|IPR018236|IPR028923 Phosphoribosylaminoimidazole-succinocarboxamide synthase|SAICAR synthetase, conserved site|SAICAR synthetase/ADE2, N-terminal GO:0004639|GO:0006164 G3DSA:3.30.200.20|G3DSA:3.30.470.20|MF_00137|PF01259|PS01058|SSF56104|TIGR00081 AFA_03435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000031|IPR024694|IPR033747|IPR035893 Class I PurE|PurE domain|PurE domain superfamily|PurE, prokaryotic type GO:0006189 G3DSA:3.40.50.7700|MF_01929|PF00731|PIRSF001338|SM01001|SSF52255|TIGR01162 AFA_03440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003135|IPR005875|IPR011054|IPR013815|IPR016185 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type|ATP-grasp fold, subdomain 1|Phosphoribosylaminoimidazole carboxylase, ATPase subunit|Pre-ATP-grasp domain superfamily|Rudiment single hybrid motif GO:0004638|GO:0005524|GO:0006189 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|MF_01928|PF02222|SSF51246|SSF52440|SSF56059|TIGR01161 AFA_03445 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005145|IPR006070|IPR010923|IPR017945|IPR038385 DHBP synthase RibB-like alpha/beta domain superfamily|Putative GTP-binding controlling metal-binding domain|Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily|YrdC-like domain|tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 GO:0003725 G3DSA:3.40.50.11030|G3DSA:3.90.870.10|PF01300|PF03481|PIRSF004930|SSF55821|TIGR00057 AFA_03450 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF12697|SSF53474 AFA_03460 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002539|IPR029069 HotDog domain superfamily|MaoC-like dehydratase domain G3DSA:3.10.129.10|PF01575|SSF54637 AFA_03465 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00073|SSF47203|SSF56645 AFA_03470 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_03475 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000101|IPR029055 Gamma-glutamyltranspeptidase|Nucleophile aminohydrolases, N-terminal GO:0006751|GO:0036374 G3DSA:1.10.246.130|G3DSA:3.60.20.40|PF01019|PR01210|SSF56235|TIGR00066 AFA_03480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002376|IPR004810|IPR036477 Formyl transferase, N-terminal|Formyl transferase, N-terminal domain superfamily|Formyltetrahydrofolate deformylase GO:0006189|GO:0008864|GO:0009058|GO:0016742 G3DSA:3.30.70.260|G3DSA:3.40.50.170|MF_01927|PF00551|PIRSF036480|PR01575|SSF53328|SSF55021|TIGR00655 AFA_03485 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006076|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905 AFA_03490 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002563|IPR012349 FMN-binding split barrel|Flavin reductase like domain GO:0010181|GO:0048037 G3DSA:2.30.110.10|PF01613|SM00903|SSF50475 AFA_03495 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000659|IPR011576|IPR012349|IPR019576|IPR019740 FMN-binding split barrel|Pyridoxamine 5'-phosphate oxidase|Pyridoxamine 5'-phosphate oxidase, conserved site|Pyridoxamine 5'-phosphate oxidase, putative|Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0004733|GO:0008615|GO:0010181|GO:0016638|GO:0048037|GO:0055114 G3DSA:2.30.110.10|MF_01629|PF01243|PF10590|PIRSF000190|PS01064|SSF50475|TIGR00558 AFA_03500 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006840|IPR036568 Gamma-glutamyl cyclotransferase-like superfamily|Glutathione-specific gamma-glutamylcyclotransferase GO:0003839|GO:0006751 G3DSA:3.10.490.10|PF04752|SSF110857 AFA_03505 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000594|IPR035985 THIF-type NAD/FAD binding fold|Ubiquitin-activating enzyme GO:0008641 G3DSA:3.40.50.720|PF00899|SSF69572 AFA_03510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001544|IPR036038 Aminotransferase class IV|Aminotransferase-like, PLP-dependent enzymes GO:0003824 G3DSA:3.20.10.10|G3DSA:3.30.470.10|PF01063|SSF56752 AFA_03515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005801|IPR005802|IPR015890|IPR019999 ADC synthase|Anthranilate synthase component I-like|Chorismate-utilising enzyme, C-terminal|Para-aminobenzoate synthase, component I GO:0009058|GO:0009396 G3DSA:3.60.120.10|PF00425|PR00095|SSF56322|TIGR00553 AFA_03520 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR004602|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase|UvrABC system subunit A GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 G3DSA:1.10.8.280|G3DSA:1.20.1580.10|G3DSA:3.30.190.20|G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR00630 AFA_03530 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001173|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF00535|SSF53448 AFA_03540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR022374|IPR027417|IPR032781 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-transporter extension domain|Energy-dependent translational throttle protein EttA|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887|GO:0045900 G3DSA:3.40.50.300|PF00005|PF12848|PS00211|SM00382|SSF52540|TIGR03719 AFA_03545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000868|IPR036380 Isochorismatase-like|Isochorismatase-like superfamily GO:0003824 G3DSA:3.40.50.850|PF00857|SSF52499 AFA_03550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008816 Glycine zipper 2TM domain GO:0019867 PD052686|PF05433 AFA_03555 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015879|IPR017941|IPR036922 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain|Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0005506|GO:0016491|GO:0044237|GO:0051537|GO:0055114 G3DSA:2.102.10.10|G3DSA:3.90.380.10|PF00355|PF00848|SSF50022|SSF55961 AFA_03560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005527|IPR036707 Cell division topological specificity factor MinE|Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 G3DSA:3.30.1070.10|MF_00262|PF03776|SSF55229|TIGR01215 AFA_03565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002586|IPR010223|IPR025501|IPR027417 ATP binding protein MinD|ATP binding protein MinD, bacterial-type|CobQ/CobB/MinD/ParA nucleotide binding domain|P-loop containing nucleoside triphosphate hydrolase GO:0016887 G3DSA:3.40.50.300|PF01656|PIRSF003092|SSF52540|TIGR01968 AFA_03570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005526|IPR007874|IPR013033|IPR016098|IPR036145|IPR038061 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal|MinC, Proteobacteria, N-terminal domain superfamily|Septum formation inhibitor MinC|Septum formation inhibitor MinC, C-terminal|Septum formation inhibitor MinC, C-terminal domain superfamily|Septum formation inhibitor MinC, N-terminal GO:0000902|GO:0051302|GO:0051726|GO:1901891 G3DSA:2.160.20.70|G3DSA:3.30.750.120|MF_00267|PF03775|PF05209|SSF63848|TIGR01222 AFA_03575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000924|IPR001412|IPR004514|IPR011035|IPR014729|IPR020056|IPR020058|IPR020059|IPR020061|IPR022861 Aminoacyl-tRNA synthetase, class I, conserved site|Glutamine-tRNA ligase, alpha-bundle domain superfamily|Glutamine-tRNA ligase, bacterial|Glutamine-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain|Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain|Ribosomal protein L25/Gln-tRNA synthetase, N-terminal|Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily|Rossmann-like alpha/beta/alpha sandwich fold GO:0000166|GO:0004812|GO:0004819|GO:0005524|GO:0005737|GO:0006412|GO:0006418|GO:0006425|GO:0043039 G3DSA:1.10.1160.10|G3DSA:2.40.240.10|G3DSA:3.40.50.620|G3DSA:3.90.800.10|MF_00126|PF00749|PF03950|PR00987|PS00178|SSF50715|SSF52374|TIGR00440 AFA_03580 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 PF01654 AFA_03585 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 PF02322 AFA_03590 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000644|IPR001807|IPR014743 CBS domain|Chloride channel, core|Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 G3DSA:1.10.3080.10|G3DSA:3.10.580.10|PF00571|PF00654|PR00762|SM00116|SSF54631|SSF81340 AFA_03600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001650|IPR002121|IPR004589|IPR006293|IPR010997|IPR011545|IPR014001|IPR018982|IPR027417|IPR032284|IPR036388 ATP-dependent DNA helicase RecQ, zinc-binding domain|DEAD/DEAH box helicase domain|DNA helicase, ATP-dependent, RecQ type|DNA helicase, ATP-dependent, RecQ type, bacterial|HRDC domain|HRDC-like superfamily|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|RQC domain|Winged helix-like DNA-binding domain superfamily GO:0000166|GO:0003676|GO:0003824|GO:0004003|GO:0005524|GO:0005622|GO:0006260|GO:0006281|GO:0006310|GO:0008026|GO:0009432|GO:0043140|GO:0044237 G3DSA:1.10.10.10|G3DSA:1.10.150.80|G3DSA:3.40.50.300|PF00270|PF00271|PF00570|PF09382|PF16124|SM00341|SM00487|SM00490|SM00956|SSF47819|SSF52540|TIGR00614|TIGR01389 AFA_03605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000788|IPR005144|IPR008926|IPR013346|IPR013509 ATP-cone domain|Ribonucleotide reductase R1 subunit, N-terminal|Ribonucleotide reductase large subunit, C-terminal|Ribonucleotide reductase large subunit, N-terminal|Ribonucleotide reductase, class I , alpha subunit GO:0004748|GO:0005524|GO:0006260|GO:0055114 G3DSA:3.20.70.20|PF00317|PF02867|PF03477|PR01183|PS00089|SSF48168|SSF51998|TIGR02506 AFA_03610 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000358|IPR009078|IPR012348|IPR030475 Ferritin-like superfamily|Ribonucleotide reductase small subunit family|Ribonucleotide reductase small subunit, acitve site|Ribonucleotide reductase-like GO:0016491|GO:0055114 G3DSA:1.10.620.20|PF00268|PS00368|SSF47240 AFA_03615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001041|IPR006058|IPR012675|IPR036010 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily GO:0009055|GO:0051536|GO:0051537 G3DSA:3.10.20.30|PF00111|PS00197|SSF54292 AFA_03620 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR032524|IPR032781|IPR037118 AAA+ ATPase domain|ABC transporter Uup, C-terminal|ABC transporter, conserved site|ABC transporter-like|ABC-transporter extension domain|P-loop containing nucleoside triphosphate hydrolase|Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0003677|GO:0004832|GO:0005524|GO:0005737|GO:0006438|GO:0016887 G3DSA:1.10.287.380|G3DSA:3.40.50.300|PF00005|PF12848|PF16326|PS00211|SM00382|SSF52540 AFA_03630 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003444|IPR020603|IPR037914|IPR038619 MraZ domain|MraZ superfamily|SpoVT-AbrB domain superfamily|Transcriptional regulator MraZ GO:0003700|GO:0006355 G3DSA:2.40.330.20|MF_01008|PD006745|PF02381|SSF89447|TIGR00242 AFA_03635 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002903|IPR023397|IPR029063 Ribosomal RNA small subunit methyltransferase H|S-adenosyl-L-methionine-dependent methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 G3DSA:1.10.150.170|G3DSA:3.40.50.150|MF_01007|PF01795|PIRSF004486|SSF53335|SSF81799|TIGR00006 AFA_03640 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 MF_00910|PF04999|TIGR02209 AFA_03645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001460|IPR005311|IPR012338|IPR036138|IPR037532 Beta-lactamase/transpeptidase-like|Penicillin-binding protein, dimerisation domain|Penicillin-binding protein, dimerisation domain superfamily|Penicillin-binding protein, transpeptidase|Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 G3DSA:3.30.450.330|G3DSA:3.40.710.10|G3DSA:3.90.1310.30|MF_02080|PF00905|PF03717|SSF56519|SSF56601 AFA_03650 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000713|IPR004101|IPR005761|IPR005863|IPR013221|IPR035911|IPR036565|IPR036615 Mur ligase, C-terminal|Mur ligase, C-terminal domain superfamily|Mur ligase, N-terminal catalytic domain|Mur ligase, central|Mur-like, catalytic domain superfamily|MurE/MurF, N-terminal|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase|UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0009058|GO:0016874|GO:0016881|GO:0047480|GO:0051301|GO:0071555 G3DSA:3.40.1190.10|G3DSA:3.40.1390.10|G3DSA:3.90.190.20|MF_00208|MF_02019|PF01225|PF02875|PF08245|SSF53244|SSF53623|SSF63418|TIGR01085|TIGR01143 AFA_03655 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000715|IPR003524|IPR018480 Glycosyl transferase, family 4|Phospho-N-acetylmuramoyl-pentapeptide transferase|Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site GO:0008963|GO:0016020|GO:0016021 MF_00038|PF00953|PF10555|PS01347|PS01348|TIGR00445 AFA_03660 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004101|IPR005762|IPR013221|IPR018109|IPR036565|IPR036615 Folylpolyglutamate synthetase, conserved site|Mur ligase, C-terminal|Mur ligase, C-terminal domain superfamily|Mur ligase, central|Mur-like, catalytic domain superfamily|UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0004326|GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0009058|GO:0009396|GO:0016874|GO:0051301 G3DSA:3.40.1190.10|G3DSA:3.40.50.720|G3DSA:3.90.190.20|MF_00639|PF02875|PF08245|PS01011|SSF51984|SSF53244|SSF53623|TIGR01087 AFA_03665 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001182|IPR013437 Probable peptidoglycan glycosyltransferase FtsW|Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0009252|GO:0016021|GO:0051301 MF_00913|PF01098|TIGR02614 AFA_03670 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004276|IPR006009|IPR007235 Glycosyl transferase, family 28, C-terminal|Glycosyltransferase family 28, N-terminal domain|N-acetylglucosaminyltransferase, MurG GO:0005975|GO:0016758|GO:0030259|GO:0050511 G3DSA:3.40.50.2000|MF_00033|PF03033|PF04101|SSF53756|TIGR01133 AFA_03675 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000713|IPR004101|IPR005758|IPR013221|IPR036565|IPR036615 Mur ligase, C-terminal|Mur ligase, C-terminal domain superfamily|Mur ligase, N-terminal catalytic domain|Mur ligase, central|Mur-like, catalytic domain superfamily|UDP-N-acetylmuramate--L-alanine ligase GO:0005524|GO:0008763|GO:0009058|GO:0009252|GO:0016874 G3DSA:3.40.1190.10|G3DSA:3.40.50.720|G3DSA:3.90.190.20|MF_00046|PF01225|PF02875|PF08245|SSF51984|SSF53244|SSF53623|TIGR01082 AFA_03680 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000291|IPR005905|IPR011095|IPR011127|IPR013815|IPR016185 ATP-grasp fold, subdomain 1|D-alanine--D-alanine ligase|D-alanine--D-alanine ligase, C-terminal|D-alanine--D-alanine ligase, N-terminal domain|D-alanine--D-alanine ligase/VANA/B/C, conserved site|Pre-ATP-grasp domain superfamily GO:0005524|GO:0005737|GO:0008716 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|MF_00047|PF01820|PF07478|PIRSF039102|PS00843|PS00844|SSF52440|SSF56059|TIGR01205 AFA_03685 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005548|IPR013685|IPR026579 Cell division protein FtsQ|Cell division protein FtsQ/DivIB|POTRA domain, FtsQ-type GO:0090529 G3DSA:3.10.20.310|G3DSA:3.40.50.11690|MF_00911|PF03799|PF08478 AFA_03690 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003494|IPR020823 Cell division protein FtsA|SHS2 domain inserted in FtsA GO:0005515|GO:0051301 G3DSA:3.30.1490.110|G3DSA:3.30.420.40|G3DSA:3.90.640.10|MF_02033|PF02491|PF14450|PIRSF003101|SM00842|SSF53067|TIGR01174 AFA_03695 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000158|IPR003008|IPR008280|IPR018316|IPR020805|IPR024757|IPR036525|IPR037103 Cell division protein FtsZ|Cell division protein FtsZ, C-terminal|Cell division protein FtsZ, conserved site|Tubulin/FtsZ, 2-layer sandwich domain|Tubulin/FtsZ, C-terminal|Tubulin/FtsZ, C-terminal domain superfamily|Tubulin/FtsZ, GTPase domain|Tubulin/FtsZ, GTPase domain superfamily GO:0003924|GO:0005525|GO:0005737 G3DSA:3.30.1330.20|G3DSA:3.40.50.1440|MF_00909|PF00091|PF12327|PR00423|PS01135|SM00864|SM00865|SSF52490|SSF55307|TIGR00065 AFA_03700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004463|IPR011334|IPR015870|IPR020568 Ribosomal protein S5 domain 2-type fold|UDP-3-O-acyl N-acetylglucosamine deacetylase|UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal|UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 G3DSA:3.30.1700.10|G3DSA:3.30.230.20|MF_00388|PF03331|SSF54211|TIGR00325 AFA_03705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007922 Protein of unknown function DUF721/UPF0232 PF05258 AFA_03710 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011055|IPR016047 Duplicated hybrid motif|Peptidase M23 G3DSA:2.70.70.10|PF01551|SSF51261 AFA_03715 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000185|IPR004027|IPR011115|IPR011116|IPR011130|IPR020937|IPR027417|IPR036266|IPR036670 P-loop containing nucleoside triphosphate hydrolase|Protein translocase subunit SecA|SEC-C motif|SecA DEAD-like, N-terminal|SecA Wing/Scaffold|SecA conserved site|SecA, Wing/Scaffold superfamily|SecA, preprotein cross-linking domain|SecA, preprotein cross-linking domain superfamily GO:0005524|GO:0006605|GO:0006886|GO:0016020|GO:0017038 G3DSA:1.10.3060.10|G3DSA:3.10.450.50|G3DSA:3.40.50.300|G3DSA:3.90.1440.10|MF_01382|PF01043|PF02810|PF07516|PF07517|PR00906|PS01312|SM00957|SM00958|SSF52540|SSF81767|SSF81886|TIGR00963 AFA_03720 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006115|IPR008927|IPR013328|IPR015814|IPR036291 6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily|Phosphogluconate dehydrogenase, NAD-binding, putative, C-terminal GO:0016491|GO:0050661|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF09130|SSF48179|SSF51735 AFA_03725 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000644|IPR006667|IPR006668|IPR006669|IPR036739|IPR038048|IPR038076 CBS domain|Magnesium transporter MgtE|Magnesium transporter MgtE, transmembrane domain|Magnesium transporter, MgtE intracellular domain|MgtE, N-terminal domain superfamily|SLC41 divalent cation transporters, integral membrane domain|SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324|GO:0015095|GO:0015693|GO:0016020 G3DSA:1.10.357.20|G3DSA:1.25.60.10|G3DSA:3.10.580.10|PF00571|PF01769|PF03448|SM00116|SM00924|SSF158791|SSF161093|SSF54631|TIGR00400 AFA_03730 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006683|IPR029069 HotDog domain superfamily|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637 AFA_03735 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002933|IPR011650|IPR017439|IPR036264 Amidohydrolase|Bacterial exopeptidase dimerisation domain|Peptidase M20|Peptidase M20, dimerisation domain GO:0016787 G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PIRSF005962|SSF53187|SSF55031|TIGR01891 AFA_03740 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 AFA_03745 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000760|IPR020583|IPR022337 Inositol monophosphatase, SuhB|Inositol monophosphatase, metal-binding site|Inositol monophosphatase-like GO:0008934|GO:0046854|GO:0046855 G3DSA:3.30.540.10|G3DSA:3.40.190.80|PF00459|PR00377|PR01959|PS00629|SSF56655 AFA_03750 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006076|IPR008471|IPR017610|IPR023032|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily|MnmC-like methyltransferase|tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC|tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0004808|GO:0008033|GO:0008168|GO:0016491|GO:0016645|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.40.50.150|G3DSA:3.50.50.60|MF_01102|PF01266|PF05430|SSF51905|TIGR03197 AFA_03755 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000322|IPR011013|IPR013780|IPR017853 Galactose mutarotase-like domain superfamily|Glycoside hydrolase family 31|Glycoside hydrolase superfamily|Glycosyl hydrolase, all-beta GO:0003824|GO:0004553|GO:0005975|GO:0030246 G3DSA:2.60.40.1180|G3DSA:2.60.40.1760|G3DSA:3.20.20.80|PF01055|SSF51011|SSF51445|SSF74650 AFA_03765 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR018449|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|NIL domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.30.70.260|G3DSA:3.40.50.300|PF00005|PF09383|PS00211|SM00382|SM00930|SSF52540|SSF55021 AFA_03770 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_03775 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004872 Lipoprotein NlpA family G3DSA:3.40.190.10|PF03180|PIRSF002854|SSF53850 AFA_03780 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001320|IPR001638|IPR018313 Ionotropic glutamate receptor|Solute-binding protein family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site GO:0004970|GO:0016020 G3DSA:3.40.190.10|PF00497|PS01039|SM00062|SM00079|SSF53850 AFA_03785 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 AFA_03790 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540 AFA_03800 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005835|IPR029044 Nucleotide-diphospho-sugar transferases|Nucleotidyl transferase domain GO:0009058|GO:0016779 G3DSA:3.90.550.10|PF00483|SSF53448 AFA_03805 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002575|IPR011009 Aminoglycoside phosphotransferase|Protein kinase-like domain superfamily G3DSA:3.30.200.20|G3DSA:3.90.1200.10|PF01636|SSF56112 AFA_03810 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007543|IPR020889 LPS-assembly protein LptD|Organic solvent tolerance protein, C-terminal GO:0009279|GO:0010033|GO:0015920|GO:0019867|GO:0043165|GO:0061024 MF_01411|PF04453 AFA_03815 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000297|IPR015391|IPR023034|IPR027304 Peptidyl-prolyl cis-trans isomerase, PpiC-type|Peptidyl-prolyl isomerase SurA|SurA N-terminal|Trigger factor/SurA domain superfamily GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 G3DSA:1.10.4030.30|G3DSA:3.10.50.40|MF_01183|PF00639|PF09312|PF13616|SSF109998|SSF54534 AFA_03820 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001737|IPR011530|IPR020596|IPR020598|IPR023165|IPR029063 Ribosomal RNA adenine dimethylase|Ribosomal RNA adenine methylase transferase, N-terminal|Ribosomal RNA adenine methylase transferase, conserved site|Ribosomal RNA adenine methyltransferase KsgA/Erm|S-adenosyl-L-methionine-dependent methyltransferase|rRNA adenine dimethylase-like GO:0000154|GO:0000179|GO:0006364|GO:0008649 G3DSA:1.10.8.100|G3DSA:3.40.50.150|MF_00607|PF00398|PS01131|SM00650|SSF53335|TIGR00755 AFA_03825 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011415|IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain|Predicted bifunctional spore maturation protein, fused SpmA/SpmB PF07670|PIRSF036542 AFA_03830 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004360|IPR004361|IPR018146|IPR029068 Glyoxalase I|Glyoxalase I, conserved site|Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain GO:0004462|GO:0046872 G3DSA:3.10.180.10|PF00903|PS00934|PS00935|SSF54593|TIGR00068 AFA_03835 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002725 Protein of unknown function DUF45 G3DSA:3.30.2010.10|PF01863 AFA_03840 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 PF01553|SM00563|SSF69593 AFA_03845 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004446|IPR006543|IPR006549|IPR023214|IPR036412 D,D-heptose 1,7-bisphosphate phosphatase|HAD superfamily|HAD-like superfamily|HAD-superfamily hydrolase,subfamily IIIA|Histidinol-phosphate phosphatase GO:0005975|GO:0016791 G3DSA:3.40.50.1000|PF13242|PIRSF004682|SSF56784|TIGR01656|TIGR01662 AFA_03850 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008909|IPR015944 DALR anticodon binding|Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004814|GO:0004820|GO:0005524|GO:0005737|GO:0006420|GO:0006426 MF_00255|PF02092|PF05746|PR01045|SM00836|SSF109604|TIGR00211 AFA_03855 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 G3DSA:1.20.58.180|G3DSA:3.30.930.10|MF_00254|PF02091|PR01044|SSF55681|TIGR00388 AFA_03865 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001753|IPR014748|IPR018376|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|SSF52096 AFA_03870 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004646|IPR004647|IPR011167|IPR036660 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain|Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain|Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily|Iron-dependent fumarate hydratase GO:0004333|GO:0006091|GO:0016829|GO:0016836 G3DSA:3.20.130.10|PF05681|PF05683|PIRSF001394|SSF117457|TIGR00722|TIGR00723 AFA_03875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001647|IPR009057|IPR023772 DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeobox-like domain superfamily GO:0003677 G3DSA:1.10.357.10|PF00440|PR00455|PS01081|SSF46689 AFA_03880 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_03885 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_03895 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000550|IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily|7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 G3DSA:3.30.70.560|PF01288|PS00794|SSF55083|TIGR01498 AFA_03900 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002646|IPR010206|IPR025866|IPR032828 Poly A polymerase, head domain|Poly(A) polymerase I|Polymerase A arginine-rich C-terminal domain|tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain GO:0003723|GO:0004652|GO:0006378|GO:0006396|GO:0016779 G3DSA:1.10.3090.10|G3DSA:3.30.460.10|MF_00957|PF01743|PF12626|PF12627|SSF81301|SSF81891|TIGR01942 AFA_03905 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006385|IPR023214|IPR036412 HAD superfamily|HAD-like superfamily|HAD-superfamily hydrolase, subfamily IB, SerB1-like G3DSA:1.20.1440.100|G3DSA:3.40.50.1000|PF12710|SSF56784|TIGR01488|TIGR01490 AFA_03910 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013317|IPR017788|IPR027417 Chromosomal replication initiator protein DnaA|DnaA regulatory inactivator Hda|P-loop containing nucleoside triphosphate hydrolase GO:0032297 G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00308|SSF52540|TIGR03420 AFA_03915 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004733|IPR010918|IPR016188|IPR036676|IPR036921 Phosphoribosylformylglycinamidine cyclo-ligase|PurM-like, C-terminal domain|PurM-like, C-terminal domain superfamily|PurM-like, N-terminal domain|PurM-like, N-terminal domain superfamily GO:0004641|GO:0005737|GO:0006189 G3DSA:3.30.1330.10|G3DSA:3.90.650.10|MF_00741|PF00586|PF02769|SSF55326|SSF56042|TIGR00878 AFA_03920 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001248|IPR038271 Purine-cytosine permease|Purine-cytosine permease superfamily GO:0016020|GO:0022857|GO:0055085 G3DSA:1.10.4160.10|PF02133 AFA_03925 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018022|IPR027417 IPP transferase|P-loop containing nucleoside triphosphate hydrolase GO:0008033 G3DSA:1.10.20.140|G3DSA:3.40.50.300|MF_00185|PF01715|SSF52540|TIGR00174 AFA_03930 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002099|IPR013507|IPR014721|IPR014762|IPR014790|IPR020568|IPR020667|IPR036890|IPR037198 DNA mismatch repair protein family, N-terminal|DNA mismatch repair protein, S5 domain 2-like|DNA mismatch repair protein, MutL|DNA mismatch repair, conserved site|Histidine kinase/HSP90-like ATPase superfamily|MutL, C-terminal domain superfamily|MutL, C-terminal, dimerisation|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0005524|GO:0006298|GO:0030983 G3DSA:2.30.42.20|G3DSA:3.30.1370.100|G3DSA:3.30.230.10|G3DSA:3.30.565.10|MF_00149|PF01119|PF08676|PF13589|PS00058|SM00853|SM01340|SSF118116|SSF54211|SSF55874|TIGR00585 AFA_03935 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR032816 SNARE associated Golgi protein PF09335 AFA_03940 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003374|IPR024932 ApbE-like superfamily|Flavin transferase ApbE GO:0017013 G3DSA:3.10.520.20|PF02424|PIRSF006268|SSF143631 AFA_03945 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001433|IPR001709|IPR005625|IPR008254|IPR008333|IPR017938|IPR029039|IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Flavodoxin/nitric oxide synthase|Flavoprotein pyridine nucleotide cytochrome reductase|Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain|Flavoprotein-like superfamily|Oxidoreductase FAD/NAD(P)-binding|PepSY-associated TM protein|Riboflavin synthase-like beta-barrel GO:0010181|GO:0016491|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.40.50.360|G3DSA:3.40.50.80|PF00175|PF00258|PF00970|PF03929|PR00371|SSF52218|SSF52343|SSF63380 AFA_03950 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014469 Protein of unknown function DUF2271 PF10029 AFA_03955 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025711 PepSY domain PF13670 AFA_03960 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002508|IPR021731 AMIN domain|N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 G3DSA:2.60.40.3500|G3DSA:3.40.630.40|PF01520|PF11741|SM00646|SSF53187 AFA_03965 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003442|IPR027417 P-loop containing nucleoside triphosphate hydrolase|tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 G3DSA:3.40.50.300|PF02367|SSF52540|TIGR00150 AFA_03970 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004776 Membrane transport protein GO:0016021|GO:0055085 PF03547 AFA_03975 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_03980 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002505|IPR012188|IPR012301|IPR012302|IPR036291|IPR037062 Malic enzyme, N-terminal domain|Malic enzyme, N-terminal domain superfamily|Malic enzyme, NAD-binding|NAD(P)-binding domain superfamily|NAD(P)-dependent malic enzyme|Phosphate acetyl/butaryl transferase GO:0004470|GO:0004471|GO:0006108|GO:0016746|GO:0046872|GO:0051287|GO:0055114 G3DSA:3.40.50.10380|G3DSA:3.40.50.10750|G3DSA:3.40.50.10950|G3DSA:3.40.50.720|PF00390|PF01515|PF03949|PIRSF036684|SM00919|SM01274|SSF51735|SSF53223|SSF53659 AFA_03985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 AFA_03990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015590|IPR016161|IPR016162|IPR016163|IPR029510 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00687|SSF53720 AFA_03995 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002220|IPR005263|IPR013785 4-hydroxy-tetrahydrodipicolinate synthase, DapA|Aldolase-type TIM barrel|DapA-like GO:0003824|GO:0008840|GO:0009089|GO:0016829 G3DSA:3.20.20.70|PF00701|PIRSF001365|PR00146|SM01130|SSF51569|TIGR00674 AFA_04000 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|SM00345|SM00895|SSF46785|SSF48008 AFA_04005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 AFA_04010 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_04015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018389|IPR026289|IPR038404 Solute binding protein, mannitol/chloroaromatic system-like|TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 G3DSA:3.40.190.10|G3DSA:3.40.190.170|PF03480|PIRSF039026 AFA_04025 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007896 Chlorhexidine efflux transporter PF05232 AFA_04030 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002577|IPR036388|IPR036390 Helix-turn-helix, HxlR type|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily G3DSA:1.10.10.10|PF01638|SSF46785 AFA_04035 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016040|IPR036291 NAD(P)-binding domain|NAD(P)-binding domain superfamily G3DSA:3.40.50.720|PF13460|SSF51735 AFA_04040 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009959|IPR032710 NTF2-like domain superfamily|Polyketide cyclase SnoaL-like GO:0030638 G3DSA:3.10.450.50|PF07366|SSF54427 AFA_04045 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_04050 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004369|IPR007214|IPR036754 Prolyl-tRNA editing protein, YbaK/EbsC|YbaK/aminoacyl-tRNA synthetase-associated domain|YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 G3DSA:3.90.960.10|PF04073|PIRSF006181|SSF55826|TIGR00011 AFA_04055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002104|IPR004107|IPR010998|IPR011010|IPR011932|IPR013762|IPR023009 DNA breaking-rejoining enzyme, catalytic core|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal|Tyrosine recombinase XerC/XerD|Tyrosine recombinase XerD GO:0003677|GO:0006310|GO:0009009|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|MF_01807|MF_01808|PF00589|PF02899|SSF56349|TIGR02225 AFA_04060 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 G3DSA:3.40.190.10|PF13531|PIRSF004846|SSF53850|TIGR01256 AFA_04065 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR011867|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016020|GO:0016021|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR02141 AFA_04070 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR027417 AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SM00382|SSF52540 AFA_04075 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR004606|IPR005116|IPR008995|IPR016462|IPR036388|IPR036390 Molybdate-dependent transcriptional regulator ModE|Molybdate/tungstate binding, C-terminal|Molybdenum-pterin binding|Transcription regulator HTH, LysR|Transport-associated OB, type 1|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355|GO:0015689|GO:0030151 G3DSA:1.10.10.10|G3DSA:2.40.50.100|PF00126|PF03459|PIRSF005763|SSF46785|SSF50331|TIGR00638 AFA_04080 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR019925|IPR027417 DNA repair protein, predicted|P-loop containing nucleoside triphosphate hydrolase SSF52540|TIGR03623 AFA_04085 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011335|IPR011604|IPR014017|IPR027417|IPR034739|IPR038726 Exonuclease, phage-type/RecB, C-terminal|P-loop containing nucleoside triphosphate hydrolase|PD-(D/E)XK endonuclease-like domain, AddAB-type|Restriction endonuclease type II-like|UvrD-like DNA helicase, C-terminal|UvrD/AddA helicase, N-terminal GO:0005524|GO:0016787 G3DSA:3.40.50.300|G3DSA:3.90.320.10|PF00580|PF12705|PF13361|SSF52540|SSF52980 AFA_04095 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003593|IPR008921|IPR012763|IPR021029|IPR022754|IPR027417 AAA+ ATPase domain|DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal|DNA polymerase III, gamma subunit, domain III|DNA polymerase III, subunit gamma/ tau|DNA polymerase III, tau subunit, domain V|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0003887|GO:0005524|GO:0006260|GO:0009360 G3DSA:1.10.8.60|G3DSA:1.20.272.10|G3DSA:3.40.50.300|PF12169|PF12170|PF13177|SM00382|SSF48019|SSF52540|TIGR02397 AFA_04100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004401|IPR036894 Nucleoid-associated protein YbaB-like domain superfamily|Nucleoid-associated protein YbaB/EbfC family G3DSA:3.30.1310.10|MF_00274|PF02575|PIRSF004555|SSF82607|TIGR00103 AFA_04105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000093|IPR006171|IPR023627|IPR023628 DNA recombination protein RecR|Recombination protein RecR|Recombination protein RecR, C4-type zinc finger|TOPRIM domain GO:0003677|GO:0006281|GO:0006310 G3DSA:1.10.8.420|G3DSA:3.40.1360.10|MF_00017|PF02132|PF13662|SM00493|SSF111304|TIGR00615 AFA_04110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:3.40.190.10|PF13379|SSF53850 AFA_04115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_04120 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_04125 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001585|IPR004730|IPR013785|IPR018225 Aldolase-type TIM barrel|Transaldolase type 1|Transaldolase, active site|Transaldolase/Fructose-6-phosphate aldolase GO:0003824|GO:0004801|GO:0005737|GO:0005975|GO:0006098 G3DSA:3.20.20.70|MF_00492|PF00923|PS00958|PS01054|SSF51569|TIGR00874 AFA_04130 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002474|IPR006274|IPR017926|IPR029062|IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain|Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily|Carbamoyl-phosphate synthase, small subunit|Class I glutamine amidotransferase-like|Glutamine amidotransferase GO:0004088|GO:0006207|GO:0006541 G3DSA:3.40.50.880|G3DSA:3.50.30.20|MF_01209|PF00117|PF00988|PR00096|PR00099|SM01097|SSF52021|SSF52317|TIGR01368 AFA_04135 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005479|IPR005480|IPR005483|IPR006275|IPR011607|IPR016185|IPR036897|IPR036914 Carbamoyl-phosphate synthase large subunit, CPSase domain|Carbamoyl-phosphate synthase, large subunit|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Carbamoyl-phosphate synthetase, large subunit oligomerisation domain|Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily|Methylglyoxal synthase-like domain|Methylglyoxal synthase-like domain superfamily|Pre-ATP-grasp domain superfamily GO:0005524|GO:0006807 G3DSA:1.10.1030.10|G3DSA:3.30.470.20|G3DSA:3.40.50.1380|G3DSA:3.40.50.20|MF_01210_A|MF_01210_B|PF02142|PF02786|PF02787|PR00098|PS00866|PS00867|SM00851|SM01096|SSF48108|SSF52335|SSF52440|SSF56059|TIGR01369 AFA_04140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007803|IPR027443 Aspartyl/asparaginy/proline hydroxylase|Isopenicillin N synthase-like GO:0018193 G3DSA:2.60.120.330|PF05118|SSF51197 AFA_04145 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SM00822|SSF51735 AFA_04150 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001345|IPR013078|IPR029033 Histidine phosphatase superfamily|Histidine phosphatase superfamily, clade-1|Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 G3DSA:3.40.50.1240|PF00300|PIRSF000709|PS00175|SM00855|SSF53254 AFA_04155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006042|IPR006043 Xanthine/uracil permease|Xanthine/uracil/vitamin C permease GO:0005215|GO:0016020|GO:0022857|GO:0055085 PF00860|PS01116|TIGR00801 AFA_04160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001437|IPR006359|IPR018151|IPR022691|IPR023459|IPR028624|IPR036805|IPR036953 Transcription elongation factor GreA|Transcription elongation factor GreA/GreB|Transcription elongation factor GreA/GreB family|Transcription elongation factor GreA/GreB, C-terminal domain superfamily|Transcription elongation factor, GreA/GreB, C-terminal|Transcription elongation factor, GreA/GreB, N-terminal|Transcription elongation factor, GreA/GreB, N-terminal domain superfamily|Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784|GO:0070063 G3DSA:1.10.287.180|G3DSA:3.10.50.30|MF_00105|PF01272|PF03449|PIRSF006092|PS00829|PS00830|SSF46557|SSF54534|TIGR01462 AFA_04165 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001890|IPR035920 RNA-binding, CRM domain|YhbY-like superfamily GO:0003723 G3DSA:3.30.110.60|PD010559|PF01985|SM01103|SSF75471 AFA_04170 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002877|IPR015507|IPR029063 Ribosomal RNA large subunit methyltransferase E|Ribosomal RNA methyltransferase FtsJ domain|S-adenosyl-L-methionine-dependent methyltransferase GO:0001510|GO:0008168|GO:0032259 G3DSA:3.40.50.150|MF_01547|PF01728|PIRSF005461|SSF53335 AFA_04175 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000642|IPR003593|IPR003959|IPR003960|IPR005936|IPR011546|IPR027417|IPR037219 AAA+ ATPase domain|ATPase, AAA-type, conserved site|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase|Peptidase M41|Peptidase M41, FtsH extracellular|Peptidase M41-like|Peptidase, FtsH GO:0004222|GO:0005524|GO:0006508|GO:0008270|GO:0016020|GO:0016021 G3DSA:1.10.8.60|G3DSA:1.20.58.760|G3DSA:2.40.50.920|G3DSA:3.40.50.300|MF_01458|PF00004|PF01434|PF06480|PS00674|SM00382|SSF140990|SSF52540|TIGR01241 AFA_04180 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000489|IPR006390|IPR011005 Dihydropteroate synthase|Dihydropteroate synthase-like|Pterin-binding domain GO:0004156|GO:0009396|GO:0042558|GO:0044237 G3DSA:3.20.20.20|PF00809|PS00793|SSF51717|TIGR01496 AFA_04185 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005841|IPR005843|IPR005844|IPR005845|IPR005846|IPR006352|IPR016055|IPR016066|IPR036900 Alpha-D-phosphohexomutase superfamily|Alpha-D-phosphohexomutase, C-terminal|Alpha-D-phosphohexomutase, C-terminal domain superfamily|Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III|Alpha-D-phosphohexomutase, alpha/beta/alpha domain I|Alpha-D-phosphohexomutase, alpha/beta/alpha domain II|Alpha-D-phosphohexomutase, alpha/beta/alpha domain III|Alpha-D-phosphohexomutase, conserved site|Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966|GO:0016868|GO:0071704 G3DSA:3.30.310.50|G3DSA:3.40.120.10|MF_01554_B|PF00408|PF02878|PF02879|PF02880|PR00509|PS00710|SSF53738|SSF55957|TIGR01455 AFA_04190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016181 Acyl-CoA N-acyltransferase G3DSA:3.40.630.30|PF13444|SSF55729 AFA_04195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003695|IPR030673 Ppx/GppA phosphatase|Pyrophosphatase, GppA/Ppx-type G3DSA:1.10.3210.10|G3DSA:3.30.420.150|G3DSA:3.30.420.40|PF02541|PIRSF001267|SSF109604|SSF53067 AFA_04200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003414|IPR024953|IPR025198|IPR025200|IPR036830|IPR036832 Polyphosphate kinase|Polyphosphate kinase C-terminal domain|Polyphosphate kinase N-terminal domain|Polyphosphate kinase N-terminal domain superfamily|Polyphosphate kinase middle domain|Polyphosphate kinase middle domain superfamily GO:0006799|GO:0008976|GO:0009358 G3DSA:3.30.1840.10|G3DSA:3.30.870.10|MF_00347|PF02503|PF13089|PF13090|PIRSF015589|SSF140356|SSF143724|SSF56024|TIGR03705 AFA_04205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005673|IPR024370 PBP domain|Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 G3DSA:3.40.190.10|PF12849|PIRSF002756|SSF53850|TIGR00975 AFA_04210 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR011864|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016020|GO:0016021|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR02138 AFA_04215 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR005672|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0016020|GO:0035435|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR00974 AFA_04220 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR005670|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase|Phosphate transport system permease protein 1 GO:0005315|GO:0005524|GO:0016020|GO:0016887|GO:0035435 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR00972 AFA_04225 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 AFA_04235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025711 PepSY domain PF03413 AFA_04240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 AFA_04245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR004358|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 G3DSA:3.30.565.10|PF02518|PR00344|SM00387|SSF55874 AFA_04250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR032808 DoxX family PF07681 AFA_04255 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001638 Solute-binding protein family 3/N-terminal domain of MltF G3DSA:3.40.190.10|PF00497|SM00062|SSF53850 AFA_04260 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_04265 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007896 Chlorhexidine efflux transporter PF05232 AFA_04280 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000917|IPR012160|IPR017849|IPR017850 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain superfamily|Lipoteichoic acid synthase-like|Sulfatase, N-terminal GO:0003824|GO:0008484 G3DSA:3.30.1120.80|G3DSA:3.40.720.10|PF00884|PIRSF005091|SSF53649 AFA_04285 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002869|IPR011766|IPR019752|IPR029061 Pyruvate-flavodoxin oxidoreductase, central domain|Pyruvate/ketoisovalerate oxidoreductase, catalytic domain|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0016491|GO:0016903|GO:0030976|GO:0055114 G3DSA:3.40.50.970|G3DSA:3.40.920.10|PF01558|PF02775|SSF52518|SSF53323 AFA_04290 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_04295 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003187|IPR036541 Phospholipase A1|Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 G3DSA:2.40.230.10|PF02253|PR01486|SSF56931 AFA_04305 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007436 Protein of unknown function DUF485 PF04341 AFA_04310 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001734|IPR018212|IPR038377 Sodium/glucose symporter superfamily|Sodium/solute symporter|Sodium/solute symporter, conserved site GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1730.10|PF00474|PS00456|TIGR00813 AFA_04315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011965|IPR012906|IPR013225|IPR036388 PaaX-like, C-terminal|PaaX-like, N-terminal|Phenylacetic acid degradation operon negative regulatory protein PaaX|Winged helix-like DNA-binding domain superfamily GO:0006351 G3DSA:1.10.10.10|PF07848|PF08223|PIRSF020623|TIGR02277 AFA_04320 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001736|IPR025202|IPR027379 Cardiolipin synthase N-terminal|Phospholipase D-like domain|Phospholipase D/Transphosphatidylase GO:0003824 G3DSA:3.30.870.10|PF13091|PF13396|PIRSF000850|SM00155|SSF56024 AFA_04335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006070|IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily|YrdC-like domain GO:0003725 G3DSA:3.90.870.10|PF01300|SSF55821|TIGR00057 AFA_04345 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002220|IPR005263|IPR013785|IPR020625 4-hydroxy-tetrahydrodipicolinate synthase, DapA|Aldolase-type TIM barrel|DapA-like|Schiff base-forming aldolase, active site GO:0003824|GO:0008840|GO:0009089|GO:0016829 G3DSA:3.20.20.70|MF_00418|PF00701|PIRSF001365|PR00146|PS00666|SM01130|SSF51569|TIGR00674 AFA_04350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010653 NlpB/DapX lipoprotein G3DSA:3.30.310.170|PF06804 AFA_04355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013249|IPR013324|IPR036388 RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 3/4-like|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|PF08281|SSF88659 AFA_04360 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR032623 FecR, N-terminal PF16220 AFA_04365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004472|IPR027417 Dethiobiotin synthase BioD|P-loop containing nucleoside triphosphate hydrolase GO:0000287|GO:0004141|GO:0005524|GO:0009102 G3DSA:3.40.50.300|MF_00336|PF13500|PIRSF006755|SSF52540|TIGR00347 AFA_04370 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005814|IPR005815|IPR015421|IPR015422|IPR015424 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA|Aminotransferase class-III|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0004015|GO:0008483|GO:0009102|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00202|PIRSF000521|PS00600|SSF53383|TIGR00508 AFA_04375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|SSF53383 AFA_04380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001128|IPR002397|IPR036396 Cytochrome P450|Cytochrome P450 superfamily|Cytochrome P450, B-class GO:0005506|GO:0016705|GO:0020037|GO:0055114 G3DSA:1.10.630.10|PF00067|PR00359|SSF48264 AFA_04385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 PF03594|TIGR00843 AFA_04390 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003347 JmjC domain G3DSA:1.10.10.2510|G3DSA:2.60.120.650|PF08007|SM00558|SSF51197 AFA_04395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000432|IPR005748|IPR007695|IPR007696|IPR007860|IPR007861|IPR016151|IPR017261|IPR027417|IPR036187|IPR036678 DNA mismatch repair protein MutS|DNA mismatch repair protein MutS, C-terminal|DNA mismatch repair protein MutS, N-terminal|DNA mismatch repair protein MutS, clamp|DNA mismatch repair protein MutS, connector domain|DNA mismatch repair protein MutS, core|DNA mismatch repair protein MutS, core domain superfamily|DNA mismatch repair protein MutS-like, N-terminal|DNA mismatch repair protein MutS/MSH|MutS, connector domain superfamily|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0006298|GO:0030983 G3DSA:1.10.1420.10|G3DSA:3.30.420.110|G3DSA:3.40.1170.10|G3DSA:3.40.50.300|MF_00096|PF00488|PF01624|PF05188|PF05190|PF05192|PIRSF037677|PS00486|SM00533|SM00534|SSF48334|SSF52540|SSF53150|SSF55271|TIGR01070 AFA_04400 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011048|IPR015943 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily|WD40/YVTN repeat-like-containing domain superfamily GO:0005515 G3DSA:2.130.10.10|SSF51004 AFA_04405 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR010105|IPR010917|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, conserved site|TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily|TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|PS01156|SSF56935|TIGR01783 AFA_04410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369|TIGR01730 AFA_04415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR003838|IPR017871|IPR025857|IPR027417 AAA+ ATPase domain|ABC transporter permease protein domain|ABC transporter, conserved site|ABC transporter-like|MacB-like periplasmic core domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016020|GO:0016887 G3DSA:3.40.50.300|PF00005|PF02687|PF12704|PS00211|SM00382|SSF52540 AFA_04420 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003423|IPR010131 Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT GO:0015562|GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|SSF56954|TIGR01845 AFA_04425 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006148|IPR018321|IPR037171 Glucosamine-6-phosphate isomerase, conserved site|Glucosamine/galactosamine-6-phosphate isomerase|NagB/RpiA transferase-like GO:0004342|GO:0005975|GO:0006044 G3DSA:3.40.50.1360|PF01182|PS01161|SSF100950 AFA_04430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR011527|IPR017871|IPR027417|IPR036640 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter type 1, transmembrane domain superfamily|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016021|GO:0016887|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123 AFA_04435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029055 Nucleophile aminohydrolases, N-terminal G3DSA:1.10.246.130|G3DSA:3.60.20.40|PF01019|PR01210|SSF56235 AFA_04440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_04445 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_04450 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011251|IPR019949|IPR036661 Luciferase family oxidoreductase, group 1|Luciferase-like domain|Luciferase-like domain superfamily GO:0016705|GO:0055114 G3DSA:3.20.20.30|PF00296|SSF51679|TIGR03558 AFA_04455 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF13649|SSF53335 AFA_04460 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006685|IPR010920|IPR011014|IPR011066|IPR023408 LSM domain superfamily|Mechanosensitive ion channel MscS|Mechanosensitive ion channel MscS domain superfamily|Mechanosensitive ion channel MscS, C-terminal|Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020|GO:0055085 G3DSA:2.30.30.60|G3DSA:3.30.70.100|PF00924|SSF50182|SSF82689|SSF82861 AFA_04465 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 AFA_04470 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001227|IPR014043|IPR016035|IPR016036|IPR020801 Acyl transferase|Acyl transferase domain superfamily|Acyl transferase/acyl hydrolase/lysophospholipase|Malonyl-CoA ACP transacylase, ACP-binding|Polyketide synthase, acyl transferase domain GO:0016740 G3DSA:3.30.70.250|G3DSA:3.40.366.10|PF00698|SM00827|SSF52151|SSF55048 AFA_04475 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 PF01874 AFA_04480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 PF10620|TIGR03135 AFA_04485 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009648|IPR029045 Biotin-dependent malonate decarboxylase, gamma subunit|ClpP/crotonase-like domain superfamily GO:0044262 G3DSA:3.90.226.10|PF06833|SSF52096|TIGR03134 AFA_04490 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000438|IPR017556|IPR029045|IPR034733 Acetyl-CoA carboxylase|Acetyl-CoA carboxylase carboxyl transferase, beta subunit|Biotin-independent malonate decarboxylase, beta subunit|ClpP/crotonase-like domain superfamily GO:0003989|GO:0006633|GO:0009317|GO:0016831|GO:0044262 G3DSA:3.90.226.10|PF01039|PR01070|SSF52096|TIGR03133 AFA_04495 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009662|IPR023439 Malonate decarboxylase delta subunit|Malonate decarboxylase/citrate lyase acyl carrier protein MF_00710|PD015450|PF06857|TIGR03130 AFA_04500 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005777|IPR037171 Acetyl-S-ACP:malonate ACP transferase|NagB/RpiA transferase-like G3DSA:3.40.1080.10|PF16957|SSF100950|TIGR01110 AFA_04505 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023631|IPR036928 Amidase signature (AS) superfamily|Amidase signature domain G3DSA:3.90.1300.10|PF01425|SSF75304 AFA_04510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006160 Short chain fatty acid transporter AtoE PF02667 AFA_04515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 AFA_04520 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001537|IPR004384|IPR029026|IPR029028 Alpha/beta knot methyltransferases|RNA methyltransferase TrmJ/LasT|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 G3DSA:1.10.8.590|G3DSA:3.40.1280.10|PF00588|PIRSF004808|SSF75217|TIGR00050 AFA_04525 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000760|IPR020550|IPR020583|IPR022337 Inositol monophosphatase, SuhB|Inositol monophosphatase, conserved site|Inositol monophosphatase, metal-binding site|Inositol monophosphatase-like GO:0008934|GO:0046854|GO:0046855 G3DSA:3.30.540.10|G3DSA:3.40.190.80|PF00459|PR00377|PR01959|PS00629|PS00630|SSF56655 AFA_04530 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000644|IPR005170|IPR005496|IPR016169|IPR036318 CBS domain|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|Integral membrane protein TerC|Transporter-associated domain GO:0016021|GO:0050660 G3DSA:3.10.580.10|G3DSA:3.30.465.10|PF00571|PF03471|PF03741|SM01091|SSF54631|SSF56176 AFA_04535 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 MF_01006|PF02673|TIGR00753 AFA_04540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004843|IPR010138|IPR029052 Calcineurin-like phosphoesterase domain, ApaH type|Metallo-dependent phosphatase-like|UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462|GO:0016787 G3DSA:3.60.21.10|MF_00575|PF00149|SSF56300|TIGR01854 AFA_04545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002130|IPR020892|IPR024936|IPR029000 Cyclophilin-like domain superfamily|Cyclophilin-type peptidyl-prolyl cis-trans isomerase|Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain|Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0000413|GO:0003755|GO:0006457 G3DSA:2.40.100.10|PF00160|PIRSF001467|PR00153|PS00170|SSF50891 AFA_04550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011990|IPR019734 Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|PF13181|SM00028|SSF48452 AFA_04555 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009080|IPR014729|IPR015273|IPR015803|IPR024909|IPR032678 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Cysteine-tRNA ligase|Cysteinyl-tRNA synthetase, class Ia, DALR|Cysteinyl-tRNA synthetase/mycothiol ligase|Rossmann-like alpha/beta/alpha sandwich fold|tRNA synthetases class I, catalytic domain GO:0000166|GO:0004812|GO:0004817|GO:0005524|GO:0005737|GO:0006418|GO:0006423 G3DSA:1.20.120.640|G3DSA:3.40.50.620|MF_00041|PF01406|PF09190|PR00983|SM00840|SSF47323|SSF52374|TIGR00435 AFA_04560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003265|IPR011257 DNA glycosylase|HhH-GPD domain GO:0003824|GO:0006281|GO:0006284 G3DSA:1.10.1670.40|G3DSA:1.10.340.30|PF00730|SM00478|SSF48150 AFA_04565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001095|IPR029045 Acetyl-CoA carboxylase, alpha subunit|ClpP/crotonase-like domain superfamily GO:0003989|GO:0006633|GO:0009317 G3DSA:3.90.226.10|MF_00823|PF03255|PR01069|SSF52096|TIGR00513 AFA_04570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011063|IPR012094|IPR012795|IPR014729|IPR015262 Rossmann-like alpha/beta/alpha sandwich fold|tRNA(Ile)-lysidine synthase|tRNA(Ile)-lysidine synthase , substrate-binding domain|tRNA(Ile)-lysidine synthase, N-terminal|tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 G3DSA:1.20.59.20|G3DSA:3.40.50.620|MF_01161|PF01171|PF09179|SSF52402|SSF82829|TIGR02432 AFA_04575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001048|IPR001341|IPR005260|IPR018042|IPR027795|IPR036393 Acetylglutamate kinase-like superfamily|Aspartate kinase|Aspartate kinase, conserved site|Aspartate kinase, monofunctional class|Aspartate/glutamate/uridylate kinase|CASTOR, ACT domain GO:0004072|GO:0008652|GO:0009089 G3DSA:3.30.70.260|G3DSA:3.40.1160.10|PF00696|PF13840|PIRSF000726|PS00324|SSF53633|SSF55021|TIGR00656|TIGR00657 AFA_04590 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001107|IPR036013 Band 7 domain|Band 7/SPFH domain superfamily G3DSA:3.30.479.30|PF01145|SM00244|SSF117892 AFA_04600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009057|IPR018060|IPR018062|IPR020449|IPR035418 DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox-like domain superfamily|Transcription regulator HTH, AraC- type|Transcription regulator HTH, AraC- type, ligand binding domain-like GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12833|PF14525|PR00032|PS00041|SM00342|SSF46689 AFA_04605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000132|IPR003010|IPR036526 Carbon-nitrogen hydrolase|Carbon-nitrogen hydrolase superfamily|Nitrilase/cyanide hydratase, conserved site GO:0006807|GO:0016810 G3DSA:3.60.110.10|PF00795|PS00920|PS00921|SSF56317 AFA_04615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001451|IPR011004 Hexapeptide repeat|Trimeric LpxA-like superfamily G3DSA:2.160.10.10|PF00132|SSF51161 AFA_04625 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR026045 Ferric binding protein G3DSA:3.40.190.10|PF13343|PIRSF002825|SSF53850 AFA_04630 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_04635 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR008995|IPR013611|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 2 GO:0005524|GO:0016887|GO:0022857|GO:0043190|GO:0055085 G3DSA:3.40.50.300|PF00005|PF08402|PS00211|SM00382|SSF50331|SSF52540 AFA_04640 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007698|IPR007886|IPR008143|IPR036291 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal|Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain|Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2|NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.40.50.720|PF01262|PF05222|PS00837|SM01002|SM01003|SSF51735|SSF52283 AFA_04645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal PF12769 AFA_04650 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012136|IPR029035|IPR034300 DHS-like NAD/FAD-binding domain superfamily|NADP transhydrogenase beta-like domain|NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 G3DSA:3.40.50.1220|PF02233|PIRSF000204|SSF52467 AFA_04675 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000262|IPR008259|IPR012133|IPR013785 Aldolase-type TIM barrel|Alpha-hydroxy acid dehydrogenase, FMN-dependent|FMN-dependent alpha-hydroxy acid dehydrogenase, active site|FMN-dependent dehydrogenase GO:0003824|GO:0010181|GO:0016491|GO:0055114 G3DSA:3.20.20.70|PF01070|PIRSF000138|PS00557|SSF51395 AFA_04680 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004045|IPR016639|IPR036249|IPR036282 Glutathione S-transferase Omega/GSH|Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0004364|GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.130|PF13409|PF13410|PIRSF015753|SSF47616|SSF52833 AFA_04685 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005025|IPR010089|IPR029039|IPR037513 Flavoprotein WrbA-like|Flavoprotein-like superfamily|NAD(P)H dehydrogenase (quinone), prokaryotic|NADPH-dependent FMN reductase-like GO:0003955|GO:0010181|GO:0016491 G3DSA:3.40.50.360|MF_01017|PF03358|SSF52218|TIGR01755 AFA_04690 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003736|IPR006683|IPR029069 HotDog domain superfamily|Phenylacetic acid degradation-related domain|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637|TIGR00369 AFA_04695 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021719 Proteinase inhibitor I78 G3DSA:3.30.10.10|PF11720 AFA_04700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003180|IPR011034|IPR036995 Formyl transferase-like, C-terminal domain superfamily|Methylpurine-DNA glycosylase|Methylpurine-DNA glycosylase superfamily GO:0003677|GO:0003824|GO:0003905|GO:0006284 G3DSA:3.10.300.10|MF_00527|PF02245|SSF50486|TIGR00567 AFA_04705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001365|IPR006330|IPR028892|IPR032466 Adenine deaminase type 2|Adenosine/AMP deaminase domain|Adenosine/adenine deaminase|Metal-dependent hydrolase GO:0000034|GO:0006146|GO:0019239 G3DSA:3.20.20.140|MF_01962|PF00962|SSF51556|TIGR01430 AFA_04710 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006696 Protein of unknown function DUF423 PF04241 AFA_04715 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 G3DSA:1.20.58.340|G3DSA:3.30.460.20|PF01544|SSF143865|SSF144083 AFA_04720 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR036250 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0055114 G3DSA:1.20.140.10|G3DSA:2.40.110.20|PF00441|PF02770|PS00073|SSF47203|SSF56645 AFA_04730 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000914 Solute-binding protein family 5 domain G3DSA:3.10.105.10|PF00496|SSF53850 AFA_04735 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_04740 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_04745 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540 AFA_04750 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009562 Protein of unknown function DUF1178 PF06676|PIRSF032131 AFA_04755 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002078|IPR002197|IPR003018|IPR003593|IPR009057|IPR027417|IPR029016 AAA+ ATPase domain|DNA binding HTH domain, Fis-type|GAF domain|GAF-like domain superfamily|Homeobox-like domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain GO:0003677|GO:0005515|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.450.40|G3DSA:3.40.50.300|PF00158|PF01590|PF02954|PR01590|SM00382|SSF46689|SSF52540|SSF55781 AFA_04760 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR029510 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|SSF53720 AFA_04765 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001670|IPR018211 Alcohol dehydrogenase, iron-type, conserved site|Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 G3DSA:1.20.1090.10|G3DSA:3.40.50.1970|PF00465|PS00060|PS00913|SSF56796 AFA_04770 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001059|IPR008991|IPR011768|IPR012340|IPR013185|IPR013852|IPR014722|IPR015365|IPR020599 Elongation factor P, C-terminal|Nucleic acid-binding, OB-fold|Ribosomal protein L2, domain 2|Translation elongation factor P|Translation elongation factor P/YeiP|Translation elongation factor P/YeiP, central|Translation elongation factor P/YeiP, conserved site|Translation elongation factor, KOW-like|Translation protein SH3-like domain superfamily GO:0003746|GO:0005737|GO:0006414|GO:0043043 G3DSA:2.30.30.30|G3DSA:2.40.50.140|MF_00141|PF01132|PF08207|PF09285|PIRSF005901|PS01275|SM00841|SM01185|SSF50104|SSF50249|TIGR00038 AFA_04775 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016633 Uncharacterised conserved protein UCP015557 PF10093|PIRSF015557|TIGR03837 AFA_04780 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021292 Protein of unknown function DUF2863 PF11062 AFA_04785 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit PF06808 AFA_04790 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_04795 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018389|IPR019546|IPR026289|IPR038404 Solute binding protein, mannitol/chloroaromatic system-like|TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA|Twin-arginine translocation pathway, signal sequence, bacterial/archaeal GO:0030288|GO:0055085 G3DSA:3.40.190.10|G3DSA:3.40.190.170|PF03480|PIRSF039026|TIGR01409 AFA_04800 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001030|IPR004406|IPR015928|IPR015929|IPR015931|IPR015932|IPR015933|IPR018136|IPR036008|IPR036288 Aconitase B|Aconitase B, HEAT-like domain|Aconitase B, HEAT-like domain superfamily|Aconitase B, swivel|Aconitase family, 4Fe-4S cluster binding site|Aconitase, domain 2|Aconitase, iron-sulfur domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase, swivel GO:0003994|GO:0005829|GO:0006099|GO:0051539 G3DSA:1.25.40.310|G3DSA:3.20.19.10|G3DSA:3.30.499.10|G3DSA:3.40.1060.10|PF00330|PF06434|PF11791|PIRSF036687|PS00450|SSF52016|SSF53732|SSF74778|TIGR00117 AFA_04805 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016181|IPR031165 Acyl-CoA N-acyltransferase|Yjdj-type Gcn5-related N-acetyltransferase G3DSA:3.40.630.30|PF14542|SSF55729 AFA_04815 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002020|IPR011278|IPR016142|IPR016143|IPR019810|IPR024176|IPR036969 2-methylcitrate synthase/citrate synthase type I|Citrate synthase|Citrate synthase active site|Citrate synthase superfamily|Citrate synthase, bacterial-type|Citrate synthase-like, large alpha subdomain|Citrate synthase-like, small alpha subdomain GO:0005737|GO:0006099|GO:0046912 G3DSA:1.10.230.10|G3DSA:1.10.580.10|PF00285|PIRSF001369|PR00143|PS00480|SSF48256|TIGR01800 AFA_04820 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012695|IPR015813|IPR018523 2-methylisocitrate lyase|Isocitrate lyase/phosphorylmutase, conserved site|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824|GO:0019629|GO:0046421 G3DSA:3.20.20.60|MF_01939|PF13714|PS00161|SSF51621|TIGR02317 AFA_04825 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000014|IPR002078|IPR002197|IPR003593|IPR009057|IPR010524|IPR012704|IPR013767|IPR025943|IPR025944|IPR027417|IPR035965 AAA+ ATPase domain|DNA binding HTH domain, Fis-type|Homeobox-like domain superfamily|P-loop containing nucleoside triphosphate hydrolase|PAS domain|PAS domain superfamily|PAS fold|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site|Signal transduction response regulator, propionate catabolism activator, N-terminal|Signal transduction response regulator, propionate catabolism, transcriptional regulator PrpR GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0005737|GO:0006355|GO:0008134|GO:0019629|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.450.20|G3DSA:3.40.50.10660|G3DSA:3.40.50.2300|G3DSA:3.40.50.300|PF00158|PF00989|PF02954|PF06506|PR01590|PS00676|PS00688|SM00091|SM00382|SSF159800|SSF46689|SSF52540|SSF55785|TIGR00229|TIGR02329 AFA_04830 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|G3DSA:1.20.1720.10|PF07690|PR01036|SSF103473 AFA_04835 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:3.30.450.180|PF13560|SM00530|SSF47413 AFA_04840 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001236|IPR001557|IPR010945|IPR015955|IPR022383|IPR036291 L-lactate/malate dehydrogenase|Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal|Lactate/malate dehydrogenase, C-terminal|Lactate/malate dehydrogenase, N-terminal|Malate dehydrogenase, type 2|NAD(P)-binding domain superfamily GO:0003824|GO:0005975|GO:0006108|GO:0016491|GO:0016615|GO:0016616|GO:0019752|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.110.10|MF_01517|PF00056|PF02866|PIRSF000102|SSF51735|SSF56327|TIGR01759 AFA_04845 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR011663|IPR028978|IPR036388|IPR036390 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|SM00345|SM00866|SSF46785|SSF64288 AFA_04850 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000701|IPR014314|IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit|Succinate dehydrogenase, cytochrome b556 subunit|Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0000104|GO:0006099|GO:0016020|GO:0016627|GO:0045281 G3DSA:1.20.1300.10|PF01127|PIRSF000178|SSF81343|TIGR02970 AFA_04855 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000701|IPR014312|IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit|Succinate dehydrogenase, hydrophobic membrane anchor|Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0000104|GO:0006099|GO:0016020|GO:0016021|GO:0016627|GO:0020037 G3DSA:1.20.1300.10|PF01127|PIRSF000169|SSF81343|TIGR02968 AFA_04860 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003952|IPR003953|IPR011281|IPR014006|IPR015939|IPR027477|IPR036188|IPR037099 FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain superfamily|Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal|Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily|Fumarate reductase/succinate dehydrogenase, FAD-binding site|Succinate dehydrogenase, flavoprotein subunit|Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily|Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0006099|GO:0016491|GO:0016627|GO:0022900|GO:0050660|GO:0055114 G3DSA:1.20.58.100|G3DSA:3.50.50.60|G3DSA:3.90.700.10|G3DSA:4.10.80.40|PF00890|PF02910|PIRSF000171|PR00411|PS00504|SSF46977|SSF51905|SSF56425|TIGR01812|TIGR01816 AFA_04865 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004489|IPR009051|IPR012675|IPR017900|IPR025192|IPR036010 2Fe-2S ferredoxin-like superfamily|4Fe-4S ferredoxin, iron-sulphur binding, conserved site|Alpha-helical ferredoxin|Beta-grasp domain superfamily|Succinate dehydogenase/fumarate reductase N-terminal|Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0009055|GO:0016491|GO:0051536|GO:0055114 G3DSA:1.10.1060.10|G3DSA:3.10.20.30|PF13085|PF13534|PS00198|SSF46548|SSF54292|TIGR00384 AFA_04870 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005631|IPR036714 Flavinator of succinate dehydrogenase|Flavinator of succinate dehydrogenase superfamily G3DSA:1.10.150.250|PF03937|SSF109910 AFA_04875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002020|IPR010953|IPR016142|IPR016143|IPR019810|IPR024176|IPR036969 Citrate synthase|Citrate synthase active site|Citrate synthase superfamily|Citrate synthase, bacterial-type|Citrate synthase, type I|Citrate synthase-like, large alpha subdomain|Citrate synthase-like, small alpha subdomain GO:0004108|GO:0005737|GO:0006099|GO:0046912 G3DSA:1.10.230.10|G3DSA:1.10.580.10|G3DSA:2.20.28.60|PF00285|PIRSF001369|PR00143|PS00480|SSF48256|TIGR01798 AFA_04880 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|SM00345|SM00895|SSF46785|SSF48008 AFA_04885 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 PF02652 AFA_04890 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002505|IPR012188|IPR012301|IPR012302|IPR036291|IPR037062 Malic enzyme, N-terminal domain|Malic enzyme, N-terminal domain superfamily|Malic enzyme, NAD-binding|NAD(P)-binding domain superfamily|NAD(P)-dependent malic enzyme|Phosphate acetyl/butaryl transferase GO:0004470|GO:0004471|GO:0006108|GO:0016746|GO:0046872|GO:0051287|GO:0055114 G3DSA:3.40.50.10380|G3DSA:3.40.50.10750|G3DSA:3.40.50.10950|G3DSA:3.40.50.720|PF00390|PF01515|PF03949|PIRSF036684|SM00919|SM01274|SSF51735|SSF53223|SSF53659 AFA_04895 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001017|IPR005475|IPR011603|IPR029061|IPR031717|IPR032106 2-oxoglutarate dehydrogenase E1 component|2-oxoglutarate dehydrogenase E1 component, N-terminal domain|Dehydrogenase, E1 component|Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal|Thiamin diphosphate-binding fold|Transketolase-like, pyrimidine-binding domain GO:0004591|GO:0006099|GO:0016624|GO:0030976|GO:0055114 G3DSA:1.10.287.1150|G3DSA:3.40.50.11610|G3DSA:3.40.50.12470|G3DSA:3.40.50.970|PF00676|PF02779|PF16078|PF16870|PIRSF000157|SM00861|SSF52518|TIGR00239 AFA_04900 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000089|IPR001078|IPR003016|IPR004167|IPR006255|IPR011053|IPR023213|IPR036625 2-oxo acid dehydrogenase, lipoyl-binding site|2-oxoacid dehydrogenase acyltransferase, catalytic domain|Biotin/lipoyl attachment|Chloramphenicol acetyltransferase-like domain superfamily|Dihydrolipoamide succinyltransferase|E3-binding domain superfamily|Peripheral subunit-binding domain|Single hybrid motif GO:0004149|GO:0006099|GO:0016746|GO:0045252 G3DSA:2.40.50.100|G3DSA:3.30.559.10|G3DSA:4.10.320.10|PF00198|PF00364|PF02817|PS00189|SSF47005|SSF51230|SSF52777|TIGR01347 AFA_04905 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001100|IPR004099|IPR006258|IPR016156|IPR023753|IPR036188 Dihydrolipoamide dehydrogenase|FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|FAD/NAD-linked reductase, dimerisation domain superfamily|Pyridine nucleotide-disulphide oxidoreductase, class I|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0004148|GO:0009055|GO:0016491|GO:0045454|GO:0050660|GO:0055114 G3DSA:3.30.390.30|G3DSA:3.50.50.60|PF02852|PF07992|PIRSF000350|PR00368|PR00411|SSF51905|SSF55424|TIGR01350 AFA_04910 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005654|IPR027417 ATPase, AFG1-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF03969|SSF52540 AFA_04915 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002305|IPR002306|IPR014729|IPR024109|IPR036913 Aminoacyl-tRNA synthetase, class Ic|Rossmann-like alpha/beta/alpha sandwich fold|Tryptophan-tRNA ligase|Tryptophan-tRNA ligase, bacterial-type|YegP-like superfamily GO:0000166|GO:0004812|GO:0004830|GO:0005524|GO:0005737|GO:0006418|GO:0006436 G3DSA:1.10.240.10|G3DSA:3.40.50.620|MF_00140_B|PF00579|PR01039|SSF160113|SSF52374|TIGR00233 AFA_04920 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001451|IPR011004|IPR018357 Hexapeptide repeat|Hexapeptide transferase, conserved site|Trimeric LpxA-like superfamily GO:0016740 G3DSA:2.160.10.10|PF00132|PS00101|SSF51161 AFA_04930 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003029|IPR006641|IPR010994|IPR012337|IPR012340|IPR018974|IPR022967|IPR023319|IPR023323|IPR032639|IPR037027 Nucleic acid-binding, OB-fold|RNA-binding domain, S1|Ribonuclease H-like superfamily|RuvA domain 2-like|S1 domain|Tex protein, YqgF-like domain|Tex-like domain superfamily|Tex-like protein, HTH domain superfamily|Tex-like protein, N-terminal|YqgF/RNase H-like domain|YqgF/RNase H-like domain superfamily GO:0003676|GO:0006139 G3DSA:1.10.10.650|G3DSA:1.10.150.310|G3DSA:1.10.3500.10|G3DSA:2.40.50.140|G3DSA:3.30.420.140|PF00575|PF09371|PF12836|PF16921|SM00316|SM00732|SSF158832|SSF47781|SSF50249|SSF53098 AFA_04935 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006555|IPR014001|IPR027417 ATP-dependent helicase, C-terminal|Helicase superfamily 1/2, ATP-binding domain|P-loop containing nucleoside triphosphate hydrolase GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 G3DSA:3.40.50.300|PF13307|SM00487|SM00491|SSF52540 AFA_04940 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011547|IPR036513 SLC26A/SulP transporter domain|STAS domain superfamily GO:0008272|GO:0015116|GO:0016021 G3DSA:3.30.750.24|PF00916|SSF52091 AFA_04945 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010424|IPR011051|IPR014710 Ethanolamine utilisation EutQ|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF06249|SSF51182 AFA_04950 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006076|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905 AFA_04955 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480 AFA_04960 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_04965 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 AFA_04970 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001647|IPR009057 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily GO:0003677 G3DSA:1.10.357.10|PF00440|PR00455|SSF46689 AFA_04975 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011990|IPR017689|IPR039565 Outer membrane lipoprotein BamD-like|Outer membrane protein assembly factor BamD|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|MF_00922|PF13525|TIGR03302 AFA_04980 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002942|IPR006145|IPR006224|IPR006225|IPR020103|IPR036986 Pseudouridine synthase, RluC/RluD|Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain superfamily|RNA-binding S4 domain|RNA-binding S4 domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.10.290.10|G3DSA:3.30.2350.10|PF00849|PF01479|PS01129|SM00363|SSF55120|SSF55174|TIGR00005 AFA_04985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003730|IPR011324|IPR038371 Cytotoxic necrotizing factor-like, catalytic|Multi-copper polyphenol oxidoreductase|Multi-copper polyphenol oxidoreductase superfamily G3DSA:3.60.140.10|PF02578|SSF64438|TIGR00726 AFA_04990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010941|IPR010963|IPR029058 Alpha/Beta hydrolase fold|Poly(R)-hydroxyalkanoic acid synthase, class I|Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0005737|GO:0016746|GO:0042619 G3DSA:3.40.50.1820|PF07167|SSF53474|TIGR01838 AFA_04995 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR011283|IPR020904|IPR036291 Acetoacetyl-CoA reductase|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0005737|GO:0016491|GO:0018454|GO:0042619|GO:0055114 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SM00822|SSF51735|TIGR01829 AFA_05000 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007897|IPR010134|IPR012909 PHA accumulation regulator DNA-binding, N-terminal|PHB accumulation regulatory|Polyhydroxyalkanoate synthesis repressor PhaR GO:0006355 PF05233|PF07879|TIGR01848 AFA_05005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007434|IPR016181 Acyl-CoA N-acyltransferase|Peptidogalycan biosysnthesis/recognition G3DSA:3.40.630.30|PF04339|SSF55729 AFA_05015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029058 Alpha/Beta hydrolase fold G3DSA:3.40.50.1820|SSF53474 AFA_05020 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR019659 Protein of unknown function DUF2514 PF10721 AFA_05025 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002196|IPR023346 Glycoside hydrolase, family 24|Lysozyme-like domain superfamily GO:0003796|GO:0009253|GO:0016998 G3DSA:1.10.530.40|PF00959|SSF53955 AFA_05055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008258|IPR023346 Lysozyme-like domain superfamily|Transglycosylase SLT domain 1 G3DSA:1.10.530.10|PF01464|SSF53955 AFA_05085 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005234|IPR036388|IPR036390 Chromosome segregation/condensation protein ScpB|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0051304 G3DSA:1.10.10.10|PF04079|SSF46785|TIGR00281 AFA_05090 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000748|IPR002942|IPR006145|IPR018496|IPR020103|IPR036986 Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, RsuA/RluB/E/F|Pseudouridine synthase, RsuA/RluB/E/F, conserved site|Pseudouridine synthase, catalytic domain superfamily|RNA-binding S4 domain|RNA-binding S4 domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982|GO:0016866 G3DSA:3.10.290.10|G3DSA:3.30.70.1560|G3DSA:3.30.70.580|PF00849|PF01479|PS01149|SM00363|SSF55120|SSF55174|TIGR00093 AFA_05095 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003728|IPR028989|IPR028998|IPR035956|IPR036847 Ribosome maturation factor RimP|Ribosome maturation factor RimP, C-terminal|Ribosome maturation factor RimP, C-terminal domain superfamily|Ribosome maturation factor RimP, N-terminal|RimP, N-terminal domain superfamily GO:0042274 G3DSA:3.30.300.70|MF_01077|PF02576|PF17384|SSF74942|SSF75420 AFA_05100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003029|IPR009019|IPR010213|IPR010214|IPR010995|IPR012340|IPR013735|IPR015946|IPR022967|IPR025249|IPR030842|IPR036555 DNA repair Rad51/transcription factor NusA, alpha-helical|K homology domain superfamily, prokaryotic type|K homology domain-like, alpha/beta|KH domain, NusA-like|Nucleic acid-binding, OB-fold|NusA, N-terminal domain superfamily|RNA-binding domain, S1|S1 domain|Transcription factor NusA, N-terminal|Transcription termination factor NusA|Transcription termination factor NusA, C-terminal duplication|Transcription termination/antitermination protein NusA, bacterial GO:0000166|GO:0003676|GO:0003700|GO:0003723|GO:0006353|GO:0031554|GO:0031564 G3DSA:1.10.150.20|G3DSA:2.40.50.140|G3DSA:3.30.1480.10|G3DSA:3.30.300.20|MF_00945_B|PF00575|PF08529|PF13184|PF14520|SM00316|SSF47794|SSF50249|SSF54814|SSF69705|TIGR01953|TIGR01954 AFA_05105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000178|IPR000795|IPR005225|IPR006847|IPR009000|IPR009061|IPR013575|IPR023115|IPR027417|IPR036925 Initiation factor 2 associated domain, bacterial|P-loop containing nucleoside triphosphate hydrolase|Putative DNA-binding domain superfamily|Small GTP-binding protein domain|Transcription factor, GTP-binding domain|Translation initiation factor IF- 2, domain 3|Translation initiation factor IF-2, N-terminal|Translation initiation factor IF-2, domain 3 superfamily|Translation initiation factor aIF-2, bacterial-like|Translation protein, beta-barrel domain superfamily GO:0003743|GO:0003924|GO:0005525|GO:0005622|GO:0006413 G3DSA:2.40.30.10|G3DSA:3.30.56.50|G3DSA:3.40.50.10050|G3DSA:3.40.50.300|MF_00100_B|PF00009|PF04760|PF08364|PF11987|PS01176|SSF46955|SSF50447|SSF52156|SSF52540|TIGR00231|TIGR00487 AFA_05110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000238|IPR015946|IPR023799 K homology domain-like, alpha/beta|Ribosome-binding factor A|Ribosome-binding factor A domain superfamily GO:0006364 G3DSA:3.30.300.20|MF_00003|PD007327|PF02033|SSF89919|TIGR00082 AFA_05115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002501|IPR014780|IPR020103|IPR032819 Pseudouridine synthase II, N-terminal|Pseudouridine synthase, catalytic domain superfamily|tRNA pseudouridine synthase II, TruB|tRNA pseudouridylate synthase B, C-terminal GO:0001522|GO:0003723|GO:0006396|GO:0009451|GO:0009982 G3DSA:3.30.2350.10|MF_01080|PF01509|PF16198|SSF55120|TIGR00431 AFA_05120 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000640|IPR000795|IPR004161|IPR005225|IPR006298|IPR009000|IPR027417|IPR031157|IPR035647 EF-G domain III/V-like|Elongation factor EFG, domain V-like|GTP-binding protein TypA|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFTu-like, domain 2|Translation protein, beta-barrel domain superfamily GO:0003924|GO:0005525 G3DSA:2.40.30.10|G3DSA:2.40.50.250|G3DSA:3.30.70.240|G3DSA:3.30.70.870|G3DSA:3.40.50.300|PF00009|PF00679|PF03144|PR00315|PS00301|SM00838|SSF50447|SSF52540|SSF54980|TIGR00231|TIGR01394 AFA_05125 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023753|IPR036188 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.50.50.60|PF07992|SSF51905 AFA_05130 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012440 Protein of unknown function DUF1641 PF07849 AFA_05135 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 AFA_05140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 AFA_05145 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001638|IPR018313 Solute-binding protein family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site G3DSA:3.40.190.10|PF00497|PS01039|SM00062|SSF53850 AFA_05150 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005269|IPR031100 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG|LOG family G3DSA:3.40.50.450|PF03641|SSF102405|TIGR00730 AFA_05155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001098|IPR002298|IPR002421|IPR002562|IPR008918|IPR012337|IPR013520|IPR018320|IPR019760|IPR020045|IPR020046|IPR029060|IPR036279|IPR036397 3'-5' exonuclease domain|5'-3' exonuclease, C-terminal domain superfamily|5'-3' exonuclease, N-terminal|5'-3' exonuclease, alpha-helical arch, N-terminal|DNA polymerase 1|DNA polymerase A|DNA polymerase I-like, H3TH domain|DNA-directed DNA polymerase, family A, conserved site|DNA-directed DNA polymerase, family A, palm domain|Exonuclease, RNase T/DNA polymerase III|Helix-hairpin-helix motif, class 2|PIN-like domain superfamily|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0003677|GO:0003824|GO:0003887|GO:0006139|GO:0006260|GO:0006261|GO:0008408 G3DSA:1.10.150.20|G3DSA:1.20.1060.10|G3DSA:3.30.420.10|G3DSA:3.30.70.370|G3DSA:3.40.50.1010|PF00476|PF01367|PF01612|PF02739|PR00868|PS00447|SM00279|SM00474|SM00475|SM00479|SM00482|SSF47807|SSF53098|SSF56672|SSF88723|TIGR00593 AFA_05160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 PF02690|SSF109755 AFA_05165 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001915|IPR022919 Peptidase M48|Peptidase M48, protease HtpX, putative GO:0004222|GO:0006508 G3DSA:3.30.2010.10|MF_00188|PF01435 AFA_05170 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 AFA_05175 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001307|IPR001763|IPR036873 Rhodanese-like domain|Rhodanese-like domain superfamily|Thiosulphate sulfurtransferase, conserved site GO:0004792 G3DSA:3.40.250.10|PF00581|PS00380|SM00450|SSF52821 AFA_05180 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003761|IPR037004 Exonuclease VII, small subunit|Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 G3DSA:1.10.287.1040|MF_00337|PD028235|PF02609|PIRSF006488|SSF116842|TIGR01280 AFA_05185 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000092|IPR008949|IPR033749 Isoprenoid synthase domain superfamily|Polyprenyl synthetase|Polyprenyl synthetase, conserved site GO:0008299 G3DSA:1.10.600.10|PF00348|PS00444|PS00723|SSF48576 AFA_05190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005474|IPR005475|IPR005477|IPR009014|IPR020826|IPR029061|IPR033248 Deoxyxylulose-5-phosphate synthase|Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase binding site|Transketolase, C-terminal domain|Transketolase, N-terminal|Transketolase-like, pyrimidine-binding domain GO:0003824|GO:0008661|GO:0016114 G3DSA:3.40.50.920|G3DSA:3.40.50.970|MF_00315|PF02779|PF02780|PF13292|PS00801|PS00802|SM00861|SSF52518|SSF52922|TIGR00204 AFA_05195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003801|IPR022838 GTP cyclohydrolase FolE2|GTP cyclohydrolase FolE2/MptA GO:0003933|GO:0003934|GO:0035998 G3DSA:3.10.270.10|MF_01527_B|PF02649 AFA_05200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000529|IPR014717|IPR020814|IPR035980 Ribosomal protein S6|Ribosomal protein S6 superfamily|Ribosomal protein S6, plastid/chloroplast|Translation elongation factor EF1B/ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 G3DSA:3.30.70.60|MF_00360|PF01250|SSF54995|TIGR00166 AFA_05205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012340|IPR023646 Nucleic acid-binding, OB-fold|Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 G3DSA:2.40.50.140|MF_00720|PIRSF003135|SSF50249|TIGR04418 AFA_05210 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001648|IPR018275|IPR036870 Ribosomal protein S18|Ribosomal protein S18 superfamily|Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:4.10.640.10|MF_00270|PD002239|PF01084|PR00974|PS00057|SSF46911|TIGR00165 AFA_05215 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009027|IPR020069|IPR020070|IPR020594|IPR036791|IPR036935 Ribosomal protein L9, C-terminal|Ribosomal protein L9, C-terminal domain superfamily|Ribosomal protein L9, N-terminal|Ribosomal protein L9, N-terminal domain superfamily|Ribosomal protein L9, bacteria/chloroplast|Ribosomal protein L9/RNase H1, N-terminal GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.10.430.100|G3DSA:3.40.5.10|MF_00503|PF01281|PF03948|PS00651|SSF55653|SSF55658|TIGR00158 AFA_05220 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003593|IPR007692|IPR007693|IPR007694|IPR016136|IPR027417|IPR036185 AAA+ ATPase domain|DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal|DNA helicase, DnaB type|DNA helicase, DnaB-like, C-terminal|DNA helicase, DnaB-like, N-terminal|DNA helicase, DnaB-like, N-terminal domain superfamily|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0003678|GO:0005524|GO:0006260 G3DSA:1.10.860.10|G3DSA:3.40.50.300|PF00772|PF03796|SM00382|SSF48024|SSF52540|TIGR00665 AFA_05225 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016833|IPR038770 Putative sodium bile acid cotransporter|Sodium/solute symporter superfamily G3DSA:1.20.1530.20|PF13593|PIRSF026166 AFA_05230 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005255 PdxA family GO:0051287|GO:0055114 G3DSA:3.40.718.10|PF04166|SSF53659|TIGR00557 AFA_05235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002716|IPR003714|IPR027417|IPR029060 P-loop containing nucleoside triphosphate hydrolase|PIN domain|PIN-like domain superfamily|PhoH-like protein GO:0005524 G3DSA:3.40.50.1010|G3DSA:3.40.50.300|PF02562|PF13638|SM00670|SSF52540|SSF88723 AFA_05240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000866|IPR024706|IPR036249 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant|Peroxiredoxin, AhpC-type|Thioredoxin-like superfamily GO:0016209|GO:0016491|GO:0055114 G3DSA:3.40.30.10|PF00578|PIRSF000239|SSF52833 AFA_05245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007523|IPR036748 MTH938-like superfamily|NDUFAF3/Mth938 domain-containing protein G3DSA:3.40.1230.10|PF04430|SSF64076 AFA_05250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|SSF53383 AFA_05255 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001342|IPR002912|IPR005106|IPR016204|IPR019811|IPR036291 ACT domain|Aspartate/homoserine dehydrogenase, NAD-binding|Homoserine dehydrogenase|Homoserine dehydrogenase, catalytic|Homoserine dehydrogenase, conserved site|NAD(P)-binding domain superfamily GO:0004412|GO:0006520|GO:0016491|GO:0050661|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.30.70.260|G3DSA:3.40.50.720|PF00742|PF01842|PF03447|PIRSF000098|PS01042|SSF51735|SSF55021|SSF55347 AFA_05260 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001926|IPR004450|IPR029144|IPR036052|IPR037158 Pyridoxal-phosphate dependent enzyme|Threonine synthase, N-terminal|Threonine synthase, N-terminal domain superfamily|Threonine synthase-like|Tryptophan synthase beta subunit-like PLP-dependent enzyme G3DSA:3.40.50.1100|G3DSA:3.90.1380.10|PF00291|PF14821|SSF53686|TIGR00260 AFA_05270 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF13302|SSF55729 AFA_05275 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002937|IPR017830|IPR036188 Amine oxidase|FAD/NAD(P)-binding domain superfamily|Hydroxysqualene dehydroxylase HpnE GO:0016491|GO:0055114 G3DSA:3.50.50.60|PF01593|SSF51905|TIGR03467 AFA_05280 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008949|IPR017828|IPR019845 Isoprenoid synthase domain superfamily|Squalene synthase HpnD-like|Squalene/phytoene synthase, conserved site GO:0016117|GO:0016765|GO:0016767 G3DSA:1.10.600.10|PF00494|PS01045|SSF48576|TIGR03465 AFA_05285 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008949|IPR017827 Hydroxysqualene synthase HpnC|Isoprenoid synthase domain superfamily G3DSA:1.10.600.10|PF00494|SSF48576|TIGR03464 AFA_05290 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000821|IPR001608|IPR009006|IPR011079|IPR020622|IPR029066 Alanine racemase|Alanine racemase, C-terminal|Alanine racemase, N-terminal|Alanine racemase, pyridoxal-phosphate attachment site|Alanine racemase/group IV decarboxylase, C-terminal|PLP-binding barrel GO:0003824|GO:0006522|GO:0008784 G3DSA:2.40.37.10|G3DSA:3.20.20.10|MF_01201|PF00842|PF01168|PR00992|PS00395|SM01005|SSF50621|SSF51419|TIGR00492 AFA_05295 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00080|PR00081|SM00822|SSF51735 AFA_05300 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003593|IPR004504|IPR008269|IPR014721|IPR020568|IPR027417 AAA+ ATPase domain|DNA repair protein RadA|P-loop containing nucleoside triphosphate hydrolase|Peptidase S16, Lon proteolytic domain|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0003684|GO:0004176|GO:0004252|GO:0005524|GO:0006281|GO:0006508 G3DSA:3.30.230.10|G3DSA:3.40.50.300|MF_01498|PF05362|PF13481|PR01874|SM00382|SSF52540|SSF54211|TIGR00416 AFA_05305 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002781 Transmembrane protein TauE-like GO:0016021 PF01925 AFA_05310 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011009|IPR022826 3-deoxy-D-manno-octulosonic acid kinase|Protein kinase-like domain superfamily GO:0016773 G3DSA:1.10.510.10|MF_00521|PF06293|SSF56112 AFA_05315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001188|IPR006059 Bacterial extracellular solute-binding protein|Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 G3DSA:3.40.190.10|PF13416|PIRSF019574|PR00909|SSF53850 AFA_05320 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR005893|IPR008995|IPR013611|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Spermidine/putrescine ABC transporter, ATP-binding subunit|Transport-associated OB, type 2 GO:0005524|GO:0015417|GO:0015846|GO:0016887|GO:0022857|GO:0043190|GO:0055085 G3DSA:2.40.50.140|G3DSA:2.40.50.940|G3DSA:3.40.50.300|PF00005|PF08402|PS00211|SM00382|SSF50331|SSF52540|TIGR01187 AFA_05325 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_05330 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_05335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006504|IPR006660|IPR036249 Arsenate reductase-like|Thioredoxin-like superfamily|Transcriptional regulator Spx/MgsR G3DSA:3.40.30.10|PF03960|SSF52833|TIGR01617 AFA_05340 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004788|IPR020672|IPR037171 NagB/RpiA transferase-like|Ribose 5-phosphate isomerase, type A|Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 G3DSA:3.30.70.260|G3DSA:3.40.50.1360|MF_00170|PF06026|SSF100950|SSF75445|TIGR00021 AFA_05345 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR026022|IPR028366|IPR038078 PhoU domain|PhoU-like domain superfamily|Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 G3DSA:1.20.58.220|PF01895|PIRSF003107|SSF109755|TIGR02135 AFA_05350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001633|IPR035919 EAL domain|EAL domain superfamily G3DSA:3.20.20.450|PF00563|SM00052|SSF141868 AFA_05355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007457|IPR036766 Fe(II) trafficking protein YggX|Fe(II) trafficking protein YggX superfamily GO:0005506 G3DSA:1.10.3880.10|MF_00686|PD029191|PF04362|PIRSF029827|SSF111148 AFA_05360 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR001048|IPR010167|IPR016181|IPR036393 Acetylglutamate kinase-like superfamily|Acyl-CoA N-acyltransferase|Amino-acid N-acetyltransferase|Aspartate/glutamate/uridylate kinase|GNAT domain GO:0004042|GO:0005737|GO:0006526 G3DSA:3.40.1160.10|G3DSA:3.40.630.30|MF_01105|PF00696|PF13508|PIRSF000423|SSF53633|SSF55729|TIGR01890 AFA_05365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001650|IPR003593|IPR007502|IPR010222|IPR011545|IPR011709|IPR014001|IPR024590|IPR027417 AAA+ ATPase domain|DEAD/DEAH box helicase domain|Domain of unknown function DUF1605|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|Helicase-associated domain|P-loop containing nucleoside triphosphate hydrolase|RNA helicase HrpA|RNA helicase HrpA, C-terminal GO:0003676|GO:0004004|GO:0004386|GO:0005524 G3DSA:1.20.120.1080|G3DSA:3.40.50.300|PF00270|PF00271|PF04408|PF07717|PF11898|SM00382|SM00487|SM00490|SM00847|SSF52540|TIGR01967 AFA_05370 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003141|IPR004013|IPR004365|IPR004805|IPR011708|IPR016195|IPR029460 Bacterial DNA polymerase III, alpha subunit|DNA polymerase III, alpha subunit|DNA polymerase, helix-hairpin-helix motif|OB-fold nucleic acid binding domain, AA-tRNA synthetase-type|PHP domain|Polymerase/histidinol phosphatase, N-terminal|Polymerase/histidinol phosphatase-like GO:0003676|GO:0003824|GO:0006260|GO:0008408 G3DSA:1.10.10.1600|G3DSA:2.40.50.140|G3DSA:3.20.20.140|PF01336|PF02811|PF07733|PF14579|SM00481|SSF89550|TIGR00594 AFA_05375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001296|IPR028098 Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF00534|PF13439|SSF53756 AFA_05380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002509|IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel|NodB homology domain GO:0003824|GO:0005975|GO:0016810 G3DSA:3.20.20.370|PF01522|SSF88713 AFA_05385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001173|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF00535|SSF53448 AFA_05390 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002509|IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel|NodB homology domain GO:0003824|GO:0005975|GO:0016810 G3DSA:3.20.20.370|PF01522|SSF88713 AFA_05395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001296|IPR028098 Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF00534|PF13439|SSF53756 AFA_05400 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001296|IPR028098 Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF00534|PF13439|SSF53756 AFA_05405 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005358 Putative zinc- or iron-chelating domain containing protein PF03692 AFA_05410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003848|IPR014729 Domain of unknown function DUF218|Rossmann-like alpha/beta/alpha sandwich fold G3DSA:3.40.50.620|PF02698 AFA_05415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002201 Glycosyl transferase, family 9 GO:0016757 G3DSA:3.40.50.2000|PF01075|SSF53756 AFA_05420 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR011527|IPR011917|IPR017871|IPR027417|IPR036640 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter type 1, transmembrane domain superfamily|ABC transporter, conserved site|ABC transporter, lipid A export, MsbA|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016021|GO:0016887|GO:0034040|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123|TIGR02203 AFA_05430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13671|SSF52540 AFA_05435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004659|IPR012340|IPR019307|IPR022967 Nucleic acid-binding, OB-fold|RNA-binding domain, S1|RNA-binding protein AU-1/Ribonuclease E/G|Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 G3DSA:2.40.50.140|PF10150|SM00316|SSF50249|TIGR00757 AFA_05440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006970 PT repeat PF04886 AFA_05470 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006076|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905 AFA_05480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_05485 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002937|IPR036188 Amine oxidase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.50.50.60|G3DSA:3.90.660.50|PF01593|PR00411|SSF51905 AFA_05490 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|SM00345|SM00895|SSF46785|SSF48008 AFA_05495 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004113|IPR004490|IPR006094|IPR016164|IPR016171|IPR036318 FAD linked oxidase, N-terminal|FAD-binding, type PCMH-like superfamily|FAD-linked oxidase, C-terminal|FAD-linked oxidase-like, C-terminal|Glycolate oxidase subunit GlcD|Vanillyl-alcohol oxidase, C-terminal subdomain 2 GO:0003824|GO:0008891|GO:0009339|GO:0016491|GO:0050660|GO:0055114 G3DSA:1.10.45.10|G3DSA:3.30.465.40|G3DSA:3.30.70.2740|PF01565|PF02913|SSF55103|SSF56176|TIGR00387 AFA_05500 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006094|IPR016164|IPR016169|IPR036318 FAD linked oxidase, N-terminal|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|FAD-linked oxidase-like, C-terminal GO:0003824|GO:0016491|GO:0050660|GO:0055114 G3DSA:3.30.465.10|PF01565|SSF55103|SSF56176 AFA_05505 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004017|IPR009051|IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Alpha-helical ferredoxin|Cysteine-rich domain GO:0051536 G3DSA:1.10.1060.10|PF02754|PF13183|PIRSF000139|PS00198|SSF54862 AFA_05510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000683|IPR036291 NAD(P)-binding domain superfamily|Oxidoreductase, N-terminal GO:0016491 G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF01408|SSF51735|SSF55347 AFA_05515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 G3DSA:3.40.830.10|PF02900|SSF53213 AFA_05520 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011986|IPR014159|IPR036622 Dioxygenase LigAB, LigA subunit superfamily|Extradiol ring-cleavage dioxygenase LigAB, LigA subunit|Protocatechuate 4,5-dioxygenase, alpha subunit G3DSA:1.10.700.10|PF07746|SSF48076|TIGR02792 AFA_05525 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006680|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase GO:0016787 G3DSA:3.20.20.140|PF04909|SSF51556 AFA_05530 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005493|IPR014165|IPR036704 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase|Ribonuclease E inhibitor RraA/RraA-like protein|Ribonuclease E inhibitor RraA/RraA-like superfamily G3DSA:3.50.30.40|PF03737|SSF89562|TIGR02798 AFA_05535 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006680|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase GO:0016787 G3DSA:3.20.20.140|PF04909|SSF51556 AFA_05540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005829|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PS00216|PS00217|SSF103473 AFA_05545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007400 PrpF protein G3DSA:3.10.310.10|PF04303|SSF54506 AFA_05550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_05555 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|G3DSA:1.20.1720.10|PF07690|PR01036|SSF103473 AFA_05560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015590|IPR016161|IPR016162|IPR016163|IPR029510 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00687|SSF53720 AFA_05565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004113|IPR006094|IPR016164|IPR016167|IPR016169|IPR016170|IPR016171|IPR036318 Cytokinin dehydrogenase, C-terminal domain superfamily|FAD linked oxidase, N-terminal|FAD-binding, type PCMH, subdomain 1|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|FAD-linked oxidase, C-terminal|FAD-linked oxidase-like, C-terminal|Vanillyl-alcohol oxidase, C-terminal subdomain 2 GO:0003824|GO:0016491|GO:0050660|GO:0055114 G3DSA:1.10.45.10|G3DSA:3.30.43.10|G3DSA:3.30.465.10|G3DSA:3.40.462.10|PF01565|PF02913|SSF55103|SSF56176 AFA_05575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009056|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF13442|SSF46626 AFA_05580 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002938|IPR012733|IPR036188 4-hydroxybenzoate 3-monooxygenase|FAD-binding domain|FAD/NAD(P)-binding domain superfamily GO:0018659|GO:0043639|GO:0050660|GO:0055114|GO:0071949 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01494|PR00420|SSF51905|SSF54373|TIGR02360 AFA_05595 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009560 Protein of unknown function DUF1176 PF06674 AFA_05605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001129|IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily|Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein G3DSA:1.20.120.550|PF01124|SSF161084 AFA_05610 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002549 Transmembrane protein TqsA-like PF01594 AFA_05615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 PF02690 AFA_05630 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002299|IPR023614 Porin domain superfamily|Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 G3DSA:2.40.160.10|PF13609|PR00184|SSF56935 AFA_05640 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 AFA_05645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002641|IPR016035|IPR021095 Acyl transferase/acyl hydrolase/lysophospholipase|Patatin-like phospholipase domain|Protein of unknown function DUF3734 GO:0006629 G3DSA:3.40.1090.10|PF01734|PF12536|SSF52151 AFA_05650 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_05655 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 PF03601 AFA_05660 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007360 Invasion gene expression up-regulator, SirB PF04247|PIRSF005610 AFA_05665 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001279|IPR036866 Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like G3DSA:3.60.15.10|PF00753|SM00849|SSF56281 AFA_05670 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001845|IPR036388|IPR036390 HTH ArsR-type DNA-binding domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01022|PR00778|SM00418|SSF46785 AFA_05675 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007272 Sulphur transport domain PF04143 AFA_05680 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007272 Sulphur transport domain PF04143 AFA_05685 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000551|IPR009061|IPR011791 Cd(II)/Pb(II)-responsive transcriptional regulator|MerR-type HTH domain|Putative DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0045893|GO:0046872 G3DSA:1.10.1660.10|PF13411|PR00040|SM00422|SSF46955|TIGR02047 AFA_05690 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001757|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299|IPR027256|IPR036163|IPR036412 HAD superfamily|HAD-like superfamily|Heavy metal-associated domain superfamily|P-type ATPase|P-type ATPase, A domain superfamily|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB|P-type ATPase, transmembrane domain superfamily GO:0000166|GO:0006812|GO:0016021|GO:0019829|GO:0030001|GO:0046872 G3DSA:2.70.150.20|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00702|PR00119|PR00941|PS00154|SSF55008|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01525 AFA_05695 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002645|IPR011547|IPR036513 SLC26A/SulP transporter domain|STAS domain|STAS domain superfamily GO:0008272|GO:0015116|GO:0016021 G3DSA:3.30.750.24|PF00916|PF01740|SSF52091 AFA_05700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005532|IPR016187 C-type lectin fold|Sulfatase-modifying factor enzyme G3DSA:3.90.1580.10|PF03781|SSF56436 AFA_05705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000917|IPR017849|IPR017850|IPR024607 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain superfamily|Sulfatase, N-terminal|Sulfatase, conserved site GO:0003824|GO:0008484 G3DSA:3.30.1120.10|G3DSA:3.40.720.10|PF00884|PS00149|SSF53649 AFA_05710 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007829 TM2 domain PF05154 AFA_05715 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000577|IPR005999|IPR018483|IPR018484|IPR018485 Carbohydrate kinase, FGGY|Carbohydrate kinase, FGGY, C-terminal|Carbohydrate kinase, FGGY, N-terminal|Carbohydrate kinase, FGGY, conserved site|Glycerol kinase GO:0004370|GO:0005975|GO:0006072|GO:0016773 G3DSA:3.30.420.40|MF_00186|PF00370|PF02782|PIRSF000538|PS00445|SSF53067|TIGR01311 AFA_05720 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000447|IPR006076|IPR031656|IPR036188|IPR038299 Alpha-glycerophosphate oxidase, C-terminal|Alpha-glycerophosphate oxidase, C-terminal domain superfamily|FAD dependent oxidoreductase|FAD-dependent glycerol-3-phosphate dehydrogenase|FAD/NAD(P)-binding domain superfamily GO:0004368|GO:0006072|GO:0009331|GO:0016491|GO:0055114 G3DSA:1.10.8.870|G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|PF16901|PR01001|PS00978|SSF51905 AFA_05725 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000064|IPR038765 Endopeptidase, NLPC/P60 domain|Papain-like cysteine peptidase superfamily G3DSA:3.90.1720.10|PF00877|SSF54001 AFA_05730 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023559|IPR036194 Flagellar transcriptional activator FlhD|Flagellar transcriptional activator FlhD superfamily GO:0044780|GO:0045893 G3DSA:1.10.4000.10|MF_00725|PD015582|PF05247|SSF63592 AFA_05735 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 MF_01891|PD016592|PF05280|PIRSF003159|SSF160930 AFA_05740 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000540|IPR002898|IPR022522 Flagellar motor protein MotA, conserved site|Flagellar motor stator, MotA|MotA/TolQ/ExbB proton channel PF01618|PS01307|TIGR03818 AFA_05745 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006665|IPR025713|IPR036737 Motility protein B, N-terminal domain|OmpA-like domain|OmpA-like domain superfamily G3DSA:3.30.1330.60|PF00691|PF13677|SSF103088 AFA_05750 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002545|IPR003594|IPR004105|IPR004358|IPR008207|IPR015162|IPR035891|IPR036061|IPR036097|IPR036641|IPR036890|IPR037006 CheW-like domain|CheW-like domain superfamily|CheY binding|CheY-binding domain of CheA|HPT domain superfamily|Histidine kinase CheA-like, homodimeric domain|Histidine kinase CheA-like, homodimeric domain superfamily|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase, phosphotransfer (Hpt) domain|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.560|G3DSA:1.20.120.160|G3DSA:2.30.30.40|G3DSA:2.40.50.180|G3DSA:3.30.565.10|G3DSA:3.30.70.400|PF01584|PF01627|PF02518|PF02895|PF09078|PR00344|SM00073|SM00260|SM00387|SM01231|SSF47226|SSF47384|SSF50341|SSF55052|SSF55874 AFA_05755 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002545|IPR036061 CheW-like domain|CheW-like domain superfamily GO:0006935|GO:0007165 G3DSA:2.30.30.40|G3DSA:2.40.50.180|PF01584|SM00260|SSF50341 AFA_05760 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003122|IPR003660|IPR004089|IPR004090 Chemotaxis methyl-accepting receptor|Chemotaxis methyl-accepting receptor Tar-related, ligand-binding|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004888|GO:0006935|GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.950|PF00015|PF00672|PF02203|PR00260|SM00283|SM00304|SSF58104 AFA_05765 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000780|IPR022641|IPR022642|IPR026024|IPR029063|IPR036804 Chemotaxis protein methyltransferase CheR|Chemotaxis receptor methyltransferase CheR, N-terminal|Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily|MCP methyltransferase, CheR-type|MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal|S-adenosyl-L-methionine-dependent methyltransferase GO:0008757 G3DSA:1.10.155.10|G3DSA:3.40.50.150|PF01739|PF03705|PIRSF000410|PR00996|SM00138|SSF47757|SSF53335 AFA_05770 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000673|IPR001789|IPR008248|IPR011006|IPR035909 CheY-like superfamily|Methylesterase CheB, C-terminal|Signal transduction response regulator, chemotaxis, CheB|Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase|Signal transduction response regulator, receiver domain GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 G3DSA:3.40.50.180|G3DSA:3.40.50.2300|MF_00099|PF00072|PF01339|PIRSF000876|SM00448|SSF52172|SSF52738 AFA_05775 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR011006 CheY-like superfamily|Signal transduction response regulator, receiver domain GO:0000160 G3DSA:3.40.50.2300|PF00072|SM00448|SSF52172 AFA_05780 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 G3DSA:1.10.287.500|PF04344|PIRSF002884|SSF75708 AFA_05785 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006135|IPR006136|IPR029025 Flagellar biosynthetic protein FlhB|Type III secretion system substrate exporter|Type III secretion system substrate exporter, C-terminal GO:0009306|GO:0015031|GO:0016020|GO:0016021|GO:0044780 G3DSA:3.40.1690.10|PF01312|PR00950|SSF160544|TIGR00328 AFA_05790 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001712|IPR006301|IPR025505 FHIPEP conserved site|Flagellar biosynthesis protein FlhA|Type III secretion system FHIPEP GO:0009306|GO:0016020|GO:0016021|GO:0044780 G3DSA:1.10.490.80|G3DSA:1.10.8.540|G3DSA:3.40.30.60|PF00771|PIRSF005419|PR00949|PS00994|TIGR01398 AFA_05795 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000897|IPR003593|IPR020006|IPR027417 AAA+ ATPase domain|Flagellar biosynthesis protein FlhF|P-loop containing nucleoside triphosphate hydrolase|Signal recognition particle, SRP54 subunit, GTPase domain GO:0003924|GO:0005525|GO:0006614|GO:0044781 G3DSA:1.20.120.1380|G3DSA:3.40.50.300|PF00448|SM00382|SM00962|SSF52540|TIGR03499 AFA_05800 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012893|IPR017508 HipA, N-terminal subdomain 1|HipA-like, C-terminal PF07804|PF13657|TIGR03071 AFA_05805 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 AFA_05810 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007809|IPR036679 FlgN-like protein|FlgN-like superfamily GO:0005515|GO:0044780 G3DSA:1.20.58.300|PF05130|SSF140566 AFA_05815 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007412|IPR031316|IPR035890 Anti-sigma-28 factor FlgM superfamily|Anti-sigma-28 factor FlgM, C-terminal|Anti-sigma-28 factor, FlgM GO:0045892 PF04316|SSF101498|TIGR03824 AFA_05820 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013974|IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal|SAF domain G3DSA:2.30.30.760|PF13144|SM00858|TIGR03170 AFA_05825 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001444|IPR006300|IPR019776 Flagellar basal body rod protein, N-terminal|Flagellar basal body rod protein, conserved site|Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 PF00460|PIRSF002889|PS00588|TIGR01396 AFA_05830 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001444|IPR006299|IPR010930|IPR019776 Flagellar basal body rod protein, N-terminal|Flagellar basal body rod protein, conserved site|Flagellar basal-body rod protein FlgC|Flagellar basal-body/hook protein, C-terminal domain GO:0030694|GO:0071973 PF00460|PF06429|PS00588|TIGR01395 AFA_05835 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005648|IPR025963|IPR025965 Flagellar hook capping protein|FlgD Ig-like domain|FlgD Tudor-like domain G3DSA:2.30.30.910|G3DSA:2.60.40.4070|PF03963|PF13860|PF13861 AFA_05840 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001444|IPR010930|IPR011491|IPR020013|IPR037058|IPR037925 Flagellar basal body rod protein, N-terminal|Flagellar basal-body/hook protein, C-terminal domain|Flagellar hook protein FlgE|Flagellar hook protein FlgE superfamily|Flagellar hook-basal body protein, FlgE/F/G|Flagellar hook-basal body protein, FlgE/F/G-like GO:0071973 G3DSA:2.60.98.20|PF00460|PF06429|PF07559|SSF117143|TIGR03506 AFA_05845 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001444|IPR010930|IPR012836|IPR019776|IPR020013|IPR037925 Flagellar basal body rod protein, N-terminal|Flagellar basal body rod protein, conserved site|Flagellar basal-body rod FlgF|Flagellar basal-body/hook protein, C-terminal domain|Flagellar hook-basal body protein, FlgE/F/G|Flagellar hook-basal body protein, FlgE/F/G-like GO:0030694|GO:0071973 PF00460|PF06429|PS00588|SSF117143|TIGR02490|TIGR03506 AFA_05850 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001444|IPR010930|IPR012834|IPR019776|IPR020013|IPR037925 Flagellar basal body rod protein, N-terminal|Flagellar basal body rod protein, conserved site|Flagellar basal-body rod FlgG|Flagellar basal-body/hook protein, C-terminal domain|Flagellar hook-basal body protein, FlgE/F/G|Flagellar hook-basal body protein, FlgE/F/G-like GO:0009426|GO:0071973 PF00460|PF06429|PS00588|SSF117143|TIGR02488|TIGR03506 AFA_05855 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 MF_00415|PF02107|PR01008 AFA_05860 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 MF_00416|PF02119|PR01010 AFA_05865 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002901|IPR013377|IPR019301 Flagellar protein FlgJ, N-terminal|Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain|Peptidoglycan hydrolase FlgJ GO:0004040|GO:0016798|GO:0044780 G3DSA:1.10.530.10|G3DSA:2.10.70.40|PF01832|PF10135|PR01002|SM00047|TIGR02541 AFA_05870 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001444|IPR002371|IPR010930 Flagellar basal body rod protein, N-terminal|Flagellar basal-body/hook protein, C-terminal domain|Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780|GO:0071973 PF00460|PF06429|PR01005|SSF64518|TIGR02492 AFA_05875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001029|IPR013384 Flagellar hook-associated protein 3|Flagellin, D0/D1 domain GO:0005198|GO:0009424|GO:0071973 G3DSA:1.20.1330.10|PF00669|SSF64518|TIGR02550 AFA_05880 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003660|IPR004089 HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.950|PF00015|PF00672|SM00283|SM00304|SSF58104 AFA_05890 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003122|IPR003660|IPR004089|IPR004090|IPR035440 Chemotaxis methyl-accepting receptor|Chemotaxis methyl-accepting receptor Tar-related, ligand-binding|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain|Methyl-accepting chemotaxis protein, four helix bundle domain superfamily GO:0004888|GO:0006935|GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.950|G3DSA:1.20.120.30|PF00015|PF02203|PR00260|SM00283|SM00304|SSF47170|SSF58104 AFA_05895 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000595|IPR000644|IPR005105|IPR014710|IPR018490|IPR018821 CBS domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding|Protein-PII uridylyltransferase, N-terminal|RmlC-like jelly roll fold GO:0008773 G3DSA:2.60.120.10|G3DSA:3.10.580.10|PF00027|PF00571|PF03445|PF10335|SM00116|SSF51206|SSF54631 AFA_05900 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006054|IPR012337|IPR013520|IPR036397 DNA polymerase III epsilon subunit, exonuclease domain|Exonuclease, RNase T/DNA polymerase III|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0003677|GO:0003887|GO:0006260 G3DSA:3.30.420.10|PF00929|SM00479|SSF53098|TIGR00573 AFA_05905 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002010|IPR006303 Flagellar biosynthesis protein FliR|Type III secretion system inner membrane R protein GO:0006605|GO:0016020|GO:0016021|GO:0044780 PF01311|PR00953|TIGR01400 AFA_05910 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002191|IPR006305 Bacterial export protein family 3|Flagellar biosynthesis protein FliQ GO:0009306|GO:0016020|GO:0016021|GO:0044780 PF01313|PIRSF004669|PR00952|TIGR01402 AFA_05915 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005837|IPR005838 Flagellar transport protein FliP|Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PF00813|PR00951|PR01302|PS01060|PS01061|TIGR01103 AFA_05920 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 PF04347|TIGR03500 AFA_05925 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001172|IPR001543|IPR012826|IPR036429 Flagellar motor switch FliN|Flagellar motor switch FliN/Type III secretion HrcQb|SpoA-like superfamily|Surface presentation of antigen (SpoA) GO:0003774|GO:0006935|GO:0009288|GO:0009425|GO:0016020|GO:0071973 G3DSA:2.30.330.10|PF01052|PR00956|SSF101801|TIGR02480 AFA_05930 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001543|IPR001689|IPR028976|IPR036429 CheC-like superfamily|Flagellar motor switch protein FliM|SpoA-like superfamily|Surface presentation of antigen (SpoA) GO:0003774|GO:0009425|GO:0071973 G3DSA:3.40.1550.10|PF01052|PF02154|PIRSF002888|PR00955|SSF101801|SSF103039|TIGR01397 AFA_05935 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 PF03748 AFA_05940 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021136|IPR038610 Flagellar hook-length control protein-like, C-terminal|FliK-like, C-terminal domain superfamily G3DSA:3.30.750.140|PF02120 AFA_05945 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012823|IPR018006 Flagellar FliJ, proteobacteria|Flagellar export FliJ GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 PF02050|PIRSF019404|PR01004|TIGR02473 AFA_05950 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000194|IPR003593|IPR005714|IPR020003|IPR020005|IPR027417 AAA+ ATPase domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|ATPase, alpha/beta subunit, nucleotide-binding domain, active site|ATPase, type III secretion system, FliI/YscN|Flagellar export ATPase FliI, clade 1|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257|GO:0044780|GO:0071973 G3DSA:3.40.50.12240|PF00006|PS00152|SM00382|SSF52540|TIGR01026|TIGR03496 AFA_05955 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000563|IPR018035 Flagellar assembly protein FliH|Flagellar assembly protein FliH/Type III secretion system HrpE GO:0003774|GO:0009288|GO:0071973 PF02108|PR01003 AFA_05960 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000090|IPR011002|IPR023087|IPR028263|IPR032779 Flagellar motor switch protein FliG|Flagellar motor switch protein FliG, C-terminal|Flagellar motor switch protein FliG, N-terminal domain|Flagellar motor switch protein FliG, alpha-helical|Flagellar motor switch protein FliG, middle domain GO:0003774|GO:0006935|GO:0009288|GO:0071973 G3DSA:1.10.220.30|PF01706|PF14841|PF14842|PIRSF003161|PR00954|SSF48029|TIGR00207 AFA_05965 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000067|IPR006182|IPR013556 Flagellar M-ring C-terminal|Flagellar M-ring protein FliF|Secretory protein YscJ/FliF GO:0003774|GO:0009431|GO:0071973 G3DSA:3.30.300.30|PF01514|PF08345|PIRSF004862|PR01009|TIGR00206 AFA_05970 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 MF_00724|PF02049|PR01006|TIGR00205 AFA_05975 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006135|IPR029025 Type III secretion system substrate exporter|Type III secretion system substrate exporter, C-terminal GO:0009306|GO:0016020 G3DSA:3.40.1690.10|PF01312|SSF160544 AFA_05980 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021136 Flagellar hook-length control protein-like, C-terminal PF02120 AFA_05985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008622 Flagellar protein FliT G3DSA:1.20.58.380|PF05400 AFA_05990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003713|IPR036584 Flagellar protein FliS|Flagellar protein FliS superfamily GO:0044780 G3DSA:1.20.120.340|PF02561|PIRSF039090|SSF101116|TIGR00208 AFA_05995 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003481|IPR010809 Flagellar hook-associated protein 2, C-terminal|Flagellar hook-associated protein 2, N-terminal GO:0007155|GO:0009288|GO:0009424 PF02465|PF07195 AFA_06000 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005186|IPR035924 FlaG protein|FlaG-like superfamily G3DSA:3.30.160.170|PF03646|SSF160214 AFA_06005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000943|IPR007624|IPR007627|IPR007630|IPR012845|IPR013324|IPR013325|IPR014284 RNA polymerase sigma factor, FliA/WhiG|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|RNA polymerase sigma-70 region 3|RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.1740.10|G3DSA:1.20.140.160|PF04539|PF04542|PF04545|PIRSF000770|PR00046|PS00715|SSF88659|SSF88946|TIGR02479|TIGR02937 AFA_06010 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006442|IPR036165 Type II toxin-antitoxin system, antitoxin Phd/YefM|YefM-like superfamily PF02604|SSF143120 AFA_06015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001029|IPR001492|IPR014981 Flagellin|Flagellin D3|Flagellin, D0/D1 domain GO:0005198|GO:0009420|GO:0071973 G3DSA:1.10.8.410|G3DSA:1.20.58.1830|PF00669|PF00700|PF08884|PR00207|SSF64518 AFA_06020 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008557 Protein of unknown function DUF839 PF05787 AFA_06030 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009216 Virulence factor SrfB PF07520|PIRSF034585 AFA_06035 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017030 Virulence effector, SrfC PF10139|PIRSF034586 AFA_06045 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002035|IPR036465 von Willebrand factor A-like domain superfamily|von Willebrand factor, type A G3DSA:3.40.50.410|PF00092|SSF53300 AFA_06050 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR027417 AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SM00382|SSF52540 AFA_06055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003838 ABC transporter permease protein domain GO:0016020 PF02687 AFA_06060 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005532|IPR016187 C-type lectin fold|Sulfatase-modifying factor enzyme G3DSA:3.90.1580.10|PF03781|SSF56436 AFA_06075 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002035|IPR036465 von Willebrand factor A-like domain superfamily|von Willebrand factor, type A PF13519|SSF53300 AFA_06080 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007383 Protein of unknown function DUF445 PF04286 AFA_06085 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000014|IPR004089|IPR004090|IPR013655|IPR035965 Chemotaxis methyl-accepting receptor|Methyl-accepting chemotaxis protein (MCP) signalling domain|PAS domain|PAS domain superfamily|PAS fold-3 GO:0004888|GO:0005515|GO:0006935|GO:0007165|GO:0016020 G3DSA:1.10.287.950|G3DSA:3.30.450.20|PF00015|PF08447|PR00260|SM00283|SSF55785|SSF58104|TIGR00229 AFA_06090 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000014|IPR003660|IPR004089|IPR004090|IPR013655|IPR035965 Chemotaxis methyl-accepting receptor|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain|PAS domain|PAS domain superfamily|PAS fold-3 GO:0004888|GO:0005515|GO:0006935|GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.950|G3DSA:3.30.450.20|PF00015|PF08447|PR00260|SM00091|SM00283|SM00304|SSF55785|SSF58104|TIGR00229 AFA_06095 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011213|IPR015797|IPR036388|IPR036390 NUDIX hydrolase-like domain superfamily|Nicotinic acid mononucleotide biosynthesis protein|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0016787 G3DSA:1.10.10.10|PIRSF019423|SSF46785|SSF55811 AFA_06100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002638|IPR004393|IPR013785|IPR022412|IPR027277|IPR036068|IPR037128 Aldolase-type TIM barrel|Nicotinate phosphoribosyltransferase-like, C-terminal|Nicotinate-nucleotide pyrophosphorylase|Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD|Quinolinate phosphoribosyl transferase, C-terminal|Quinolinate phosphoribosyl transferase, N-terminal|Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0003824|GO:0004514|GO:0009435|GO:0016763|GO:0019363 G3DSA:3.20.20.70|G3DSA:3.90.1170.20|PF01729|PF02749|PIRSF006250|SSF51690|SSF54675|TIGR00078 AFA_06105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_06115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 PF02447 AFA_06125 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00081|SSF51735 AFA_06130 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_06135 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004624|IPR013987|IPR013988 PhnA protein|PhnA protein, C-terminal|PhnA protein, N-terminal G3DSA:2.20.25.10|G3DSA:2.30.30.40|PF03831|PF08274|SSF57783|SSF82057|TIGR00686 AFA_06140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007627|IPR013249|IPR013324|IPR013325|IPR014284|IPR036388 RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF04542|PF08281|SSF88659|SSF88946|TIGR02937 AFA_06145 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006860|IPR012373|IPR032623 Fe(2+)-dicitrate sensor, transmembrane component|FecR protein|FecR, N-terminal G3DSA:2.60.120.1440|PF04773|PF16220|PIRSF018266 AFA_06150 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011662|IPR012910|IPR036942 Secretin/TonB, short N-terminal domain|TonB-dependent receptor, plug domain|TonB-dependent receptor-like, beta-barrel domain superfamily GO:0019867 G3DSA:2.40.170.20|G3DSA:3.55.50.30|PF07715|SM00965|SSF56935 AFA_06155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004852|IPR026259|IPR036909 Cytochrome c-like domain superfamily|Di-c-type haem protein, MauG/cytochrome c peroxidase|Di-haem cytochrome c peroxidase GO:0009055|GO:0016491|GO:0020037|GO:0055114 G3DSA:1.10.760.10|PF03150|PIRSF000294|SSF46626 AFA_06160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001670|IPR018211 Alcohol dehydrogenase, iron-type, conserved site|Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 G3DSA:1.20.1090.10|G3DSA:3.40.50.1970|PF00465|PS00913|SSF56796 AFA_06165 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018389|IPR026289|IPR038404 Solute binding protein, mannitol/chloroaromatic system-like|TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 G3DSA:3.40.190.10|G3DSA:3.40.190.170|PF03480|PIRSF039026 AFA_06170 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 AFA_06175 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_06180 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006685|IPR006686|IPR010920|IPR011014|IPR011066|IPR023408 LSM domain superfamily|Mechanosensitive ion channel MscS|Mechanosensitive ion channel MscS domain superfamily|Mechanosensitive ion channel MscS, C-terminal|Mechanosensitive ion channel MscS, conserved site|Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020|GO:0055085 G3DSA:2.30.30.60|G3DSA:3.30.70.100|PF00924|PS01246|SSF50182|SSF82689|SSF82861 AFA_06185 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002293|IPR004840|IPR004841 Amino acid permease, conserved site|Amino acid permease/ SLC12A domain|Amino acid/polyamine transporter I GO:0006865|GO:0016020|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1740.10|PF00324|PIRSF006060|PS00218 AFA_06190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000425|IPR022357|IPR023271|IPR023743 Aquaporin Z|Aquaporin-like|Major intrinsic protein|Major intrinsic protein, conserved site GO:0006833|GO:0015250|GO:0015267|GO:0016020|GO:0016021|GO:0055085 G3DSA:1.20.1080.10|MF_01146|PF00230|PR00783|PS00221|SSF81338|TIGR00861 AFA_06195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021762 Protein of unknown function DUF3325 PF11804 AFA_06200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR022109 Protein of unknown function DUF3649 PF12365 AFA_06205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005625 PepSY-associated TM protein PF03929 AFA_06215 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009827 Dicarboxylate carrier MatC N-terminal PF07158 AFA_06220 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000868|IPR036380 Isochorismatase-like|Isochorismatase-like superfamily GO:0003824 G3DSA:3.40.50.850|PF00857|SSF52499 AFA_06225 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007272 Sulphur transport domain PF04143 AFA_06230 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015323|IPR016156|IPR023753|IPR036188|IPR037092 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|FAD/NAD-linked reductase, dimerisation domain superfamily|Flavocytochrome c sulphide dehydrogenase, flavin-binding|Flavocytochrome c sulphide dehydrogenase, flavin-binding domain superfamily GO:0016491|GO:0050660|GO:0055114 G3DSA:3.50.50.60|G3DSA:3.90.760.10|PF07992|PF09242|SSF51905|SSF55424 AFA_06235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|SSF46626 AFA_06240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013783|IPR014756|IPR014880|IPR030995 Immunoglobulin E-set|Immunoglobulin-like fold|Sulphur oxidation protein SoxZ|Thiosulfate oxidation carrier complex protein SoxZ G3DSA:2.60.40.10|PF08770|SSF81296|TIGR04490 AFA_06245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016568|IPR032711|IPR038162 Ig-like SoxY domain|Ig-like SoxY domain superfamily|Sulphur oxidation, SoxY G3DSA:2.60.40.2470|PF13501|PIRSF010312 AFA_06250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023753|IPR036188 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.50.50.60|PF07992|SSF51905 AFA_06255 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002059|IPR011129|IPR012156|IPR012340|IPR019844 Cold shock domain|Cold shock, CspA|Cold-shock conserved site|Cold-shock protein, DNA-binding|Nucleic acid-binding, OB-fold GO:0003676|GO:0003677|GO:0006355 G3DSA:2.40.50.140|PF00313|PIRSF002599|PR00050|PS00352|SM00357|SSF50249 AFA_06275 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR027417|IPR027785 P-loop containing nucleoside triphosphate hydrolase|UvrD-like helicase C-terminal domain G3DSA:3.40.50.300|PF13245|PF13538|SSF52540 AFA_06280 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000719|IPR011009 Protein kinase domain|Protein kinase-like domain superfamily GO:0004672|GO:0005524|GO:0006468 G3DSA:1.10.510.10|PF00069|SM00220|SSF56112 AFA_06300 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000241|IPR002052|IPR014329|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|M6 adenine DNA methyltransferase, Alw26I|Putative RNA methylase domain|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0008168|GO:0032259 G3DSA:3.40.50.150|PF01170|PR00507|PS00092|SSF53335|TIGR02987 AFA_06305 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001525|IPR029063|IPR031303 C-5 cytosine methyltransferase|DNA methylase, C-5 cytosine-specific, conserved site|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168 G3DSA:3.40.50.150|G3DSA:3.90.120.10|PF00145|PR00105|PS00095|SSF53335|TIGR00675 AFA_06310 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014328 Restriction endonuclease, type II, Alw26I/Eco31I/Esp3I PF09665|TIGR02986 AFA_06315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 AFA_06325 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018754 Protein of unknown function DUF2285 PF10074 AFA_06330 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014147 Type IV conjugative transfer protein TrbJ SSF101082|TIGR02780 AFA_06345 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007430|IPR032710 Bacterial virulence protein VirB8|NTF2-like domain superfamily GO:0016020 G3DSA:3.10.450.230|PF04335|SSF54427 AFA_06350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010258|IPR014142|IPR038161 Conjugal transfer, TrbG/VirB9/CagX|P-type conjugative transfer protein TrbG|VirB9/CagX/TrbG, C-terminal domain superfamily G3DSA:2.60.40.2500|PF03524|TIGR02775 AFA_06355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005498 Type IV secretion system, VirB10 / TraB / TrbI G3DSA:1.10.1200.160|G3DSA:2.40.128.260|PF03743 AFA_06360 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018733 Protein of unknown function DUF2274 PF10038 AFA_06365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR036388 Winged helix-like DNA-binding domain superfamily G3DSA:1.10.10.10 AFA_06375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR003661|IPR004358|IPR013727|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal|Two-component sensor kinase, N-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PF08521|PR00344|SM00387|SM00388|SSF47384|SSF55874 AFA_06380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR001867|IPR011006|IPR016032|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF46894|SSF52172 AFA_06385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000883|IPR036927 Cytochrome c oxidase subunit I|Cytochrome c oxidase-like, subunit I superfamily GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 G3DSA:1.20.210.10|PF00115|SSF81442 AFA_06390 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003468|IPR036909 Cytochrome c oxidase, monohaem subunit/FixO|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF02433|SSF46626 AFA_06395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009056|IPR024167|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily|Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 G3DSA:1.10.760.10|PF00034|PIRSF000005|SSF46626 AFA_06400 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009056|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF00034|SSF46626 AFA_06405 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004843|IPR029052 Calcineurin-like phosphoesterase domain, ApaH type|Metallo-dependent phosphatase-like GO:0016787 G3DSA:3.60.21.10|PF00149|SSF56300 AFA_06410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR010105|IPR011662|IPR012910|IPR036942|IPR037066 Secretin/TonB, short N-terminal domain|TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily|TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0019867|GO:0038023 G3DSA:2.170.130.10|G3DSA:2.40.170.20|G3DSA:3.55.50.30|PF00593|PF07660|PF07715|SM00965|SSF56935|TIGR01783 AFA_06415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006860|IPR012373|IPR032508|IPR032623 Fe(2+)-dicitrate sensor, transmembrane component|FecR protein|FecR, N-terminal|Protein FecR, C-terminal G3DSA:2.60.120.1440|G3DSA:3.55.50.30|PF04773|PF16220|PF16344|PIRSF018266 AFA_06420 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007627|IPR013249|IPR013324|IPR013325|IPR014284|IPR036388 RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|PF04542|PF08281|SSF88659|SSF88946|TIGR02937 AFA_06425 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000192|IPR015421|IPR015422|IPR015424|IPR024169 Aminotransferase class V domain|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase GO:0003824 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00266|PIRSF000524|SSF53383 AFA_06430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003423|IPR028351 Cyclolysin transport protein CyaE|Outer membrane efflux protein GO:0005215|GO:0015562|GO:0055085 G3DSA:1.20.1600.10|PF02321|PIRSF001892|SSF56954 AFA_06435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 PF01914|TIGR00427 AFA_06440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006680|IPR011059|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain superfamily GO:0016787|GO:0016810 G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF01979|SSF51338|SSF51556 AFA_06445 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR031381 Uncharacterised protein YtcA PF17090 AFA_06450 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR039562 Membrane fusion protein, biotin-lipoyl like domain G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.50.100|PF13437|PF13533|SSF111369 AFA_06455 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 PF04632 AFA_06460 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 PF00860 AFA_06465 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006385|IPR023214|IPR036412 HAD superfamily|HAD-like superfamily|HAD-superfamily hydrolase, subfamily IB, SerB1-like G3DSA:1.20.1440.100|G3DSA:3.40.50.1000|PF12710|SSF56784|TIGR01488|TIGR01490 AFA_06470 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005325 Protein of unknown function DUF308, membrane PF03729 AFA_06475 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007410|IPR036182 Copper chaperone PCuAC|Copper chaperone PCuAC superfamily G3DSA:2.60.40.1890|PF04314|SSF110087 AFA_06480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003782|IPR036249 Copper chaperone SCO1/SenC|Thioredoxin-like superfamily G3DSA:3.40.30.10|PF02630|SSF52833 AFA_06490 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002932|IPR013785|IPR024188|IPR027283 Aldolase-type TIM barrel|Glutamate synthase domain|Glutamate synthase large subunit-like protein|Glutamate synthase large subunit-like protein, bacteria GO:0003824|GO:0006537|GO:0015930|GO:0016638|GO:0055114 G3DSA:3.20.20.70|PF01645|PIRSF006429|PIRSF500060|SSF51395 AFA_06495 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 PF04632 AFA_06500 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR023187|IPR036388|IPR036390 MarR-type HTH domain|Transcriptional regulator MarR-type, conserved site|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01047|PR00598|PS01117|SM00347|SSF46785 AFA_06505 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008136|IPR036653 CinA, C-terminal|CinA-like, C-terminal G3DSA:3.90.950.20|PF02464|SSF142433|TIGR00199 AFA_06510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000573|IPR001030|IPR006249|IPR015928|IPR015931|IPR036008 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase, iron-sulfur domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase, swivel|Aconitase/Iron-responsive element-binding protein 2 G3DSA:1.10.1440.20|G3DSA:3.20.19.10|G3DSA:3.30.499.10|G3DSA:3.30.499.20|PF00330|PF00694|PR00415|SSF52016|SSF53732|TIGR01341 AFA_06515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|SM00345|SM00895|SSF46785|SSF48008 AFA_06520 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007400 PrpF protein G3DSA:3.10.310.10|PF04303|SSF54506 AFA_06525 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009057|IPR018060|IPR018062|IPR035418 DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox-like domain superfamily|Transcription regulator HTH, AraC- type, ligand binding domain-like GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12833|PF14525|PS00041|SM00342|SSF46689 AFA_06530 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 AFA_06535 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001663|IPR015879|IPR017941|IPR036922 Aromatic-ring-hydroxylating dioxygenase, alpha subunit|Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain|Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0005506|GO:0016491|GO:0044237|GO:0051537|GO:0055114 G3DSA:2.102.10.10|G3DSA:3.90.380.10|PF00355|PF00848|PR00090|SSF50022|SSF55961 AFA_06540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000391|IPR032710 NTF2-like domain superfamily|Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 G3DSA:3.10.450.50|PF00866|SSF54427 AFA_06545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000868|IPR036380 Isochorismatase-like|Isochorismatase-like superfamily GO:0003824 G3DSA:3.40.50.850|PF00857|SSF52499 AFA_06550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735 AFA_06555 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002937|IPR036188 Amine oxidase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.50.50.60|PF01593|SSF51905 AFA_06560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015590|IPR016161|IPR016162|IPR016163 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|SSF53720 AFA_06565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF00106|PR00080|PR00081|SSF51735 AFA_06570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR020845 AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.40.50.12780|PF00501|PS00455|SSF56801 AFA_06575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003779|IPR004675|IPR029032 AhpD-like|Alkylhydroperoxidase AhpD core|Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 G3DSA:1.20.1290.10|PF02627|SSF69118|TIGR00778 AFA_06585 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006685|IPR010920|IPR011014|IPR011066|IPR022249|IPR023408 Domain of unknown function DUF3772|LSM domain superfamily|Mechanosensitive ion channel MscS|Mechanosensitive ion channel MscS domain superfamily|Mechanosensitive ion channel MscS, C-terminal|Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020|GO:0055085 G3DSA:2.30.30.60|G3DSA:3.30.70.100|PF00924|PF12607|SSF50182|SSF82689|SSF82861 AFA_06590 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006685|IPR010920|IPR011014|IPR011066|IPR023408 LSM domain superfamily|Mechanosensitive ion channel MscS|Mechanosensitive ion channel MscS domain superfamily|Mechanosensitive ion channel MscS, C-terminal|Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020|GO:0055085 G3DSA:2.30.30.60|G3DSA:3.30.70.100|PF00924|SSF50182|SSF82689|SSF82861 AFA_06595 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005828|IPR005829|IPR036259 MFS transporter superfamily|Major facilitator, sugar transporter-like|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1250.20|PF00083|PS00216|PS00217|SSF103473 AFA_06600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000192|IPR015421|IPR015422|IPR015424 Aminotransferase class V domain|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00266|SSF53383 AFA_06605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023393 START-like domain superfamily G3DSA:3.30.530.20|SSF55961 AFA_06610 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001387|IPR010982|IPR011051|IPR013096|IPR014710 Cro/C1-type helix-turn-helix domain|Cupin 2, conserved barrel|Lambda repressor-like, DNA-binding domain superfamily|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold GO:0003677|GO:0043565 G3DSA:1.10.260.40|G3DSA:2.60.120.10|PF01381|PF07883|SM00530|SSF47413|SSF51182 AFA_06615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR003607|IPR006674|IPR011006 CheY-like superfamily|HD domain|HD/PDEase domain|Signal transduction response regulator, receiver domain GO:0000160 G3DSA:1.10.3210.10|G3DSA:3.40.50.2300|PF00072|PF01966|SM00448|SM00471|SSF109604|SSF52172 AFA_06620 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000014|IPR001789|IPR003594|IPR003661|IPR004358|IPR005330|IPR008207|IPR011006|IPR013767|IPR035965|IPR036097|IPR036641|IPR036890 CheY-like superfamily|HPT domain superfamily|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|MHYT domain|PAS domain|PAS domain superfamily|PAS fold|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase, phosphotransfer (Hpt) domain|Signal transduction histidine kinase-related protein, C-terminal|Signal transduction response regulator, receiver domain GO:0000155|GO:0000160|GO:0006355|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:1.20.120.160|G3DSA:3.30.450.20|G3DSA:3.30.565.10|G3DSA:3.40.50.2300|PF00072|PF00512|PF00989|PF01627|PF02518|PF03707|PR00344|SM00091|SM00387|SM00388|SM00448|SSF47226|SSF47384|SSF52172|SSF55785|SSF55874|TIGR00229 AFA_06625 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000644|IPR006667|IPR006668|IPR006669|IPR036739|IPR038048|IPR038076 CBS domain|Magnesium transporter MgtE|Magnesium transporter MgtE, transmembrane domain|Magnesium transporter, MgtE intracellular domain|MgtE, N-terminal domain superfamily|SLC41 divalent cation transporters, integral membrane domain|SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324|GO:0015095|GO:0015693|GO:0016020 G3DSA:1.10.357.20|G3DSA:1.25.60.10|G3DSA:3.10.580.10|PF00571|PF01769|PF03448|SM00116|SM00924|SSF158791|SSF161093|SSF54631|TIGR00400 AFA_06635 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 MF_01844|PF06965|TIGR00773 AFA_06640 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003732|IPR023509 D-aminoacyl-tRNA deacylase DTD|D-aminoacyl-tRNA deacylase-like superfamily GO:0002161|GO:0005737|GO:0051499 G3DSA:3.50.80.10|MF_00518|PF02580|SSF69500|TIGR00256 AFA_06645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000390 Small multidrug resistance protein family GO:0016021 G3DSA:1.10.3730.20|PF00893|SSF103481 AFA_06650 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR032816 SNARE associated Golgi protein PF09335 AFA_06655 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF00583|SSF55729 AFA_06660 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023006|IPR032710 NTF2-like domain superfamily|Uncharacterised protein family UPF0225 G3DSA:3.10.450.50|MF_00612|SSF54427 AFA_06665 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001915 Peptidase M48 GO:0004222|GO:0006508 G3DSA:3.30.2010.10|PF01435 AFA_06670 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013543|IPR016887|IPR032710 Calcium/calmodulin-dependent protein kinase II, association-domain|NTF2-like domain superfamily|Uncharacterised conserved protein UCP028470, steroid isomerase-related GO:0004683|GO:0005516|GO:0006468 G3DSA:3.10.450.50|PF08332|PIRSF028470|SSF54427 AFA_06695 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001091|IPR002941|IPR017985|IPR029063 DNA methylase N-4/N-6|DNA methylase, N-4 cytosine-specific, conserved site|Restriction/modification DNA-methylase|S-adenosyl-L-methionine-dependent methyltransferase GO:0003677|GO:0006306|GO:0008170|GO:0015667|GO:0090124 PF01555|PR00508|PS00093|SSF53335 AFA_06700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029058 Alpha/Beta hydrolase fold G3DSA:3.40.50.1820|SSF53474 AFA_06705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007476 Putative exonuclease, RdgC GO:0006310 MF_00194|PF04381 AFA_06720 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011335|IPR011604|IPR019080 Exonuclease, phage-type/RecB, C-terminal|Restriction endonuclease type II-like|YqaJ viral recombinase G3DSA:3.90.320.10|PF09588|SSF52980 AFA_06725 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007499 Essential recombination function protein PF04404 AFA_06780 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025474 Domain of unknown function DUF4325 PF14213 AFA_06785 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR036890 Histidine kinase/HSP90-like ATPase superfamily G3DSA:3.30.565.10|SSF55874 AFA_06790 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:1.10.260.40 AFA_06795 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:1.10.260.40 AFA_06815 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008711|IPR036619 NinB superfamily|Recombinase NinB G3DSA:1.10.3790.10|PF05772|SSF103370 AFA_06820 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR031875|IPR038439 Recombination enhancement, RecA-dependent nuclease|Ref-like superfamily G3DSA:3.30.40.190|PF16786 AFA_06835 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009414 Protein of unknown function DUF1064 PF06356 AFA_06860 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018738 Protein of unknown function DUF2280 PF10045 AFA_06865 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR035421 Terminase, large subunit gp17-like PF17289 AFA_06875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR024459 Protein of unknown function DUF1073 PF06381 AFA_06880 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006528 Phage head morphogenesis domain PF04233|TIGR01641 AFA_06900 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily SSF81573 AFA_06905 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012441 Protein of unknown function DUF1643 PF07799 AFA_06930 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003343|IPR008964 Bacterial Ig-like, group 2|Invasin/intimin cell-adhesion fragments G3DSA:2.60.40.1080|PF02368|SM00635|SSF49373 AFA_06950 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013491 Caudovirus, tape measure, N-terminal TIGR02675 AFA_06975 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013830|IPR036514 SGNH hydrolase superfamily|SGNH hydrolase-type esterase domain G3DSA:3.40.50.1110|PF13472|SSF52266 AFA_06985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002196|IPR023346 Glycoside hydrolase, family 24|Lysozyme-like domain superfamily GO:0003796|GO:0009253|GO:0016998 G3DSA:1.10.530.40|PF00959|SSF53955 AFA_06990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR019659 Protein of unknown function DUF2514 PF10721 AFA_07005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003738|IPR036590 SOS response associated peptidase (SRAP)|SOS response associated peptidase-like G3DSA:3.90.1680.10|PF02586|SSF143081 AFA_07015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002104|IPR010998|IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|SSF56349 AFA_07030 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic PD052090 AFA_07040 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015927|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S24/S26A/S26B/S26C G3DSA:2.10.109.10|PF00717|SSF51306 AFA_07060 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009414 Protein of unknown function DUF1064 PF06356 AFA_07075 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025395 Protein of unknown function DUF4128 PF13554 AFA_07090 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006431 Bacteriophage lambda, GpH, tail tape measure, C-terminal PF09718 AFA_07095 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010265 Bacteriophage lambda, GpM, minor tail PF05939 AFA_07100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006487 Bacteriophage lambda, GpL, minor tail PF05100|TIGR01600 AFA_07105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000064|IPR028090|IPR038765 Endopeptidase, NLPC/P60 domain|JAB domain, prokaryotic|Papain-like cysteine peptidase superfamily G3DSA:3.40.140.10|G3DSA:3.90.1720.10|PF00877|PF14464|SSF102712|SSF54001 AFA_07110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010654 Bacteriophage lambda tail assembly I PF06805 AFA_07115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013783|IPR015406|IPR032876|IPR036116 Domain of unknown function DUF1983|Fibronectin type III superfamily|Immunoglobulin-like fold|Tip attachment protein J GO:0005515 G3DSA:1.20.5.340|G3DSA:2.60.40.10|PF09327|PF13550|SSF49265 AFA_07155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002196|IPR023346 Glycoside hydrolase, family 24|Lysozyme-like domain superfamily GO:0003796|GO:0009253|GO:0016998 G3DSA:1.10.530.40|PF00959|SSF53955 AFA_07160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR019659 Protein of unknown function DUF2514 PF10721 AFA_07170 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|SSF52540 AFA_07180 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007437 Protein of unknown function DUF486 PF04342|PIRSF021239|SSF103481 AFA_07185 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005184|IPR025485|IPR038670 Domain of unknown function DUF306, Meta/HslJ|Domain of unknown function DUF4377|HslJ-like superfamily G3DSA:2.40.128.270|PF03724|PF14302 AFA_07190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007486|IPR029024 Inner membrane protein YebE|TerB-like G3DSA:1.10.3680.10|PF04391|SSF158682 AFA_07195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 AFA_07200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR024997 Protein of unknown function DUF3892 PF13031 AFA_07205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012337|IPR013520|IPR024530|IPR036397 Exonuclease, RNase T/DNA polymerase III|Putative quorum-sensing-regulated virulence factor|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676 G3DSA:3.30.420.10|PF12843|SM00479|SSF53098 AFA_07210 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000160|IPR029787 GGDEF domain|Nucleotide cyclase G3DSA:3.30.70.270|PF00990|SM00267|SSF55073|TIGR00254 AFA_07220 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005302|IPR005303|IPR011037 MOSC, N-terminal beta barrel|Molybdenum cofactor sulfurase, C-terminal|Pyruvate kinase-like, insert domain superfamily GO:0003824|GO:0030151|GO:0030170 PF03473|PF03476|SSF141673|SSF50800 AFA_07225 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000485|IPR011008|IPR019885|IPR019887|IPR019888|IPR036388|IPR036390 AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Transcription regulator HTH, AsnC-type, conserved site|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13412|PR00033|PS00519|SM00344|SSF46785|SSF54909 AFA_07230 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000277|IPR006233|IPR015421|IPR015422|IPR015424 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme|Cystathionine beta-lyase, bacterial|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0004121|GO:0005737|GO:0006520|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01053|PIRSF001434|PS00868|SSF53383|TIGR01324 AFA_07240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000086|IPR015797|IPR020084 NUDIX hydrolase domain|NUDIX hydrolase, conserved site|NUDIX hydrolase-like domain superfamily GO:0016787 G3DSA:3.90.79.10|PF00293|PS00893|SSF55811 AFA_07245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007401 Protein of unknown function DUF454 PF04304|PIRSF016789 AFA_07250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003779|IPR004675|IPR010195|IPR029032 AhpD-like|Alkylhydroperoxidase AhpD core|Carboxymuconolactone decarboxylase-like|Uncharacterised peroxidase-related GO:0051920|GO:0055114 G3DSA:1.20.1290.10|G3DSA:1.20.5.810|PF02627|SSF69118|TIGR00778|TIGR01926 AFA_07255 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001518|IPR014729|IPR018223|IPR023437|IPR024073|IPR024074 Argininosuccinate synthase|Argininosuccinate synthase, conserved site|Argininosuccinate synthase, type 2 subfamily|Argininosuccinate synthetase mutimerisation domain, C-terminal tail|Argininosuccinate synthetase, catalytic/multimerisation domain body|Rossmann-like alpha/beta/alpha sandwich fold GO:0004055|GO:0005524|GO:0006526|GO:0042803 G3DSA:1.10.287.400|G3DSA:3.40.50.620|G3DSA:3.90.1260.10|MF_00581|PF00764|PS00564|PS00565|SSF52402|SSF69864|TIGR00032 AFA_07260 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004843|IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA|Calcineurin-like phosphoesterase domain, ApaH type GO:0004115|GO:0016787 G3DSA:3.30.750.180|G3DSA:3.60.21.40|MF_00905|PF00149|SSF56300 AFA_07265 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR008995|IPR013611|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 2 GO:0005524|GO:0016887|GO:0022857|GO:0043190|GO:0055085 G3DSA:3.40.50.300|PF00005|PF08402|PS00211|SM00382|SSF50331|SSF52540 AFA_07270 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_07275 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_07280 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:3.40.190.10|PF13343|SSF53850 AFA_07285 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000843|IPR010982|IPR028082 LacI-type HTH domain|Lambda repressor-like, DNA-binding domain superfamily|Periplasmic binding protein-like I GO:0003677|GO:0006355 G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|PS00356|SM00354|SSF47413|SSF53822 AFA_07290 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017926|IPR029062 Class I glutamine amidotransferase-like|Glutamine amidotransferase G3DSA:3.40.50.880|PF00117|SSF52317 AFA_07295 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 PF09604|TIGR02115 AFA_07300 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 MF_00275|PF03814|PIRSF001294|TIGR00680 AFA_07305 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 MF_00276|PF02669|PIRSF001296|TIGR00681 AFA_07310 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001757|IPR006391|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299|IPR036412 HAD superfamily|HAD-like superfamily|P-type ATPase|P-type ATPase, A domain superfamily|P-type ATPase, B chain, subfamily IA|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, transmembrane domain superfamily GO:0000166|GO:0005524|GO:0006813|GO:0008556|GO:0016021 G3DSA:1.20.1110.10|G3DSA:2.70.150.20|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|MF_00285|PF00122|PF00702|PR00119|PS00154|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01497 AFA_07315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR003661|IPR003852|IPR004358|IPR014729|IPR025201|IPR029016|IPR036097|IPR036890|IPR038318 GAF-like domain superfamily|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|KdpD, transmembrane domain superfamily|Rossmann-like alpha/beta/alpha sandwich fold|Sensor protein KdpD, transmembrane domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0000160|GO:0004673|GO:0007165|GO:0016020|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:1.20.120.620|G3DSA:3.30.450.40|G3DSA:3.30.565.10|G3DSA:3.40.50.300|G3DSA:3.40.50.620|PF00512|PF02518|PF02702|PF13493|PR00344|SM00387|SM00388|SSF47384|SSF52402|SSF55874 AFA_07320 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 AFA_07325 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002292|IPR006130|IPR006131|IPR006132|IPR024904|IPR036901 Aspartate/ornithine carbamoyltransferase|Aspartate/ornithine carbamoyltransferase superfamily|Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain|Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding|Ornithine carbamoyltransferase|Ornithine/putrescine carbamoyltransferase GO:0004585|GO:0006520|GO:0006591|GO:0016597|GO:0016743 G3DSA:3.40.50.1370|MF_01109|PF00185|PF02729|PR00100|PR00102|PS00097|SSF53671|TIGR00658 AFA_07330 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021969 Protein of unknown function DUF3579 G3DSA:3.30.70.2340|PF12112 AFA_07335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006139|IPR006140|IPR029752|IPR036291 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain superfamily GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF00389|PF02826|PS00065|SSF51735|SSF52283 AFA_07340 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002583|IPR036510 Ribosomal protein S20|Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.20.58.110|MF_00500|PD004231|PF01649|SSF46992|TIGR00029 AFA_07345 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004268 Peptidoglycan biosynthesis protein MurJ MF_02078|PF03023|PIRSF002869|PR01806|TIGR01695 AFA_07350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SSF51735 AFA_07355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000850|IPR006259|IPR007862|IPR027417|IPR033690 Adenylate kinase subfamily|Adenylate kinase, active site lid domain|Adenylate kinase, conserved site|Adenylate kinase/UMP-CMP kinase|P-loop containing nucleoside triphosphate hydrolase GO:0004017|GO:0005524|GO:0006139|GO:0016776|GO:0019205 G3DSA:3.40.50.300|MF_00235|PF00406|PF05191|PR00094|PS00113|SSF52540|TIGR01351 AFA_07360 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003329|IPR004528|IPR029044 3-deoxy-D-manno-octulosonate cytidylyltransferase|Acylneuraminate cytidylyltransferase|Nucleotide-diphospho-sugar transferases GO:0005737|GO:0008690 G3DSA:3.90.550.10|MF_00057|PF02348|SSF53448|TIGR00466 AFA_07365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005651|IPR038053 Trm112-like|Uncharacterised protein family UPF0434 G3DSA:2.20.25.10|MF_01187|PF03966|SSF158997 AFA_07370 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003758|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 MF_00409|PF02606|SSF52540|TIGR00682 AFA_07375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 PF02472 AFA_07380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002898 MotA/TolQ/ExbB proton channel PF01618 AFA_07385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003753|IPR020579|IPR025824 Exonuclease VII, large subunit|Exonuclease VII, large subunit, C-terminal|OB-fold nucleic acid binding domain GO:0003676|GO:0006308|GO:0008855|GO:0009318 MF_00378|PF02601|PF13742|TIGR00237 AFA_07390 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001189|IPR019831|IPR019832|IPR019833|IPR036314|IPR036324 Manganese/iron superoxide dismutase|Manganese/iron superoxide dismutase, C-terminal|Manganese/iron superoxide dismutase, C-terminal domain superfamily|Manganese/iron superoxide dismutase, N-terminal|Manganese/iron superoxide dismutase, N-terminal domain superfamily|Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 G3DSA:1.10.287.990|G3DSA:2.40.500.20|PF00081|PF02777|PIRSF000349|PR01703|PS00088|SSF46609|SSF54719 AFA_07395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002024|IPR008331|IPR009078|IPR012347 Bacterioferritin|Ferritin-like|Ferritin-like superfamily|Ferritin/DPS protein domain GO:0006826|GO:0006879|GO:0008199 G3DSA:1.20.1260.10|PF00210|PIRSF002560|PR00601|PS00549|SSF47240|TIGR00754 AFA_07400 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002155|IPR012793|IPR016039|IPR020610|IPR020613|IPR020615|IPR020616|IPR020617 Beta-ketoadipyl CoA thiolase|Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747|GO:0019619 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|PS00737|SSF53901|TIGR01930|TIGR02430 AFA_07405 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003795|IPR038695 Protein of unknown function DUF192|Saro_0823-like superfamily G3DSA:2.60.120.1140|PF02643 AFA_07410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002059|IPR011129|IPR012156|IPR012340|IPR019844 Cold shock domain|Cold shock, CspA|Cold-shock conserved site|Cold-shock protein, DNA-binding|Nucleic acid-binding, OB-fold GO:0003676|GO:0003677|GO:0006355 G3DSA:2.40.50.140|PF00313|PIRSF002599|PR00050|PS00352|SM00357|SSF50249 AFA_07415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003769|IPR014719|IPR022935 ATP-dependent Clp protease adaptor protein ClpS|Adaptor protein ClpS, core|Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like GO:0030163 G3DSA:3.30.1390.10|MF_00302|PF02617|SSF54736 AFA_07420 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001270|IPR003593|IPR003959|IPR004176|IPR013461|IPR018368|IPR019489|IPR027417|IPR028299|IPR036628 AAA+ ATPase domain|ATP-dependent Clp protease ATP-binding subunit ClpA|ATPase, AAA-type, core|Clp ATPase, C-terminal|Clp, N-terminal|Clp, N-terminal domain superfamily|ClpA/B family|ClpA/B, conserved site 1|ClpA/B, conserved site 2|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887|GO:0019538|GO:0043335 G3DSA:1.10.1780.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00004|PF02861|PF07724|PF10431|PR00300|PS00870|PS00871|SM00382|SM01086|SSF52540|SSF81923|TIGR02639 AFA_07425 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007498 Intermembrane transport protein PqiA-like PF04403 AFA_07430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003399 Mce/MlaD PF02470 AFA_07435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005586 ABC-type transport auxiliary lipoprotein component G3DSA:3.40.50.10610|PF03886|SSF159594 AFA_07440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002872|IPR005933|IPR010985|IPR013321|IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR024082|IPR024089|IPR025703|IPR029041 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde/histidinol dehydrogenase|Arc-type ribbon-helix-helix|Bifunctional protein PutA|Delta-1-pyrroline-5-carboxylate dehydrogenase 3|FAD-linked oxidoreductase-like|Proline dehydrogenase PutA, domain I/II|Proline dehydrogenase PutA, domain II|Proline dehydrogenase domain|Ribbon-helix-helix GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0006561|GO:0010133|GO:0016491|GO:0016620|GO:0055114 G3DSA:1.10.1220.10|G3DSA:3.20.20.220|G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PF01619|PF14850|PIRSF000197|PS00070|SSF47598|SSF51730|SSF53720|SSF81935|TIGR01238 AFA_07445 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 AFA_07450 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_07455 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_07460 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|PS00211|SM00382|SSF52540 AFA_07465 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030660|IPR032823 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|High-affinity branched-chain amino acid transport ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015658|GO:0015803|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|PIRSF039137|PS00211|SM00382|SSF52540 AFA_07480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008217 Ccc1 family PF01988 AFA_07485 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002818|IPR029062 Class I glutamine amidotransferase-like|DJ-1/PfpI G3DSA:3.40.50.880|PF01965|SSF52317 AFA_07490 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007560|IPR011335|IPR011856 Restriction endonuclease type II-like|Restriction endonuclease type IV, Mrr|tRNA endonuclease-like domain superfamily GO:0003676|GO:0003677|GO:0004518|GO:0004519|GO:0009307 G3DSA:3.40.1350.10|PF04471|SSF52980 AFA_07495 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010286|IPR016909|IPR029063 Ribosomal RNA large subunit methyltransferase F|Ribosomal RNA large subunit methyltransferase F-like|S-adenosyl-L-methionine-dependent methyltransferase GO:0005737|GO:0006364|GO:0008168|GO:0008988 G3DSA:3.40.50.150|MF_01848|PF05971|PIRSF029038|SSF53335 AFA_07500 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008181|IPR029054|IPR036157 Deoxyuridine triphosphate nucleotidohydrolase|dUTPase-like|dUTPase-like superfamily GO:0004170|GO:0046080 G3DSA:2.70.40.10|MF_00116|PF00692|SSF51283|TIGR00576 AFA_07505 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003382|IPR005252|IPR007085|IPR035929|IPR036551 CoaB-like superfamily|Coenzyme A biosynthesis bifunctional protein CoaBC|DNA/pantothenate metabolism flavoprotein, C-terminal|Flavin prenyltransferase-like|Flavoprotein GO:0003824|GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 G3DSA:3.40.50.10300|G3DSA:3.40.50.1950|PF02441|PF04127|SSF102645|SSF52507|TIGR00521 AFA_07510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MF_00161|PF01252|PR00781|PS00855|TIGR00077 AFA_07515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001412|IPR002300|IPR002301|IPR009008|IPR009080|IPR010663|IPR013155|IPR014729|IPR023585 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Isoleucine-tRNA ligase|Isoleucine-tRNA ligase, type 1|Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding|Rossmann-like alpha/beta/alpha sandwich fold|Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain|Zinc finger, FPG/IleRS-type GO:0000166|GO:0002161|GO:0004812|GO:0004822|GO:0005524|GO:0005737|GO:0006418|GO:0006428 G3DSA:1.10.730.20|G3DSA:3.40.50.620|G3DSA:3.90.740.10|MF_02002|PF00133|PF06827|PF08264|PR00984|PS00178|SSF47323|SSF50677|SSF52374|TIGR00392 AFA_07520 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002606|IPR014729|IPR015864|IPR015865|IPR023465 FAD synthetase|Riboflavin kinase domain superfamily|Riboflavin kinase domain, bacterial/eukaryotic|Riboflavin kinase, bacterial|Rossmann-like alpha/beta/alpha sandwich fold GO:0003919|GO:0008531|GO:0009231 G3DSA:2.40.30.30|G3DSA:3.40.50.620|PF01687|PF06574|PIRSF004491|SM00904|SSF52374|SSF82114|TIGR00083 AFA_07525 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002376|IPR004607|IPR036477 Formyl transferase, N-terminal|Formyl transferase, N-terminal domain superfamily|Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189|GO:0009058|GO:0016742 G3DSA:3.40.50.170|MF_01930|PF00551|SSF53328|TIGR00639 AFA_07530 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001678|IPR023267|IPR029063 RNA (C5-cytosine) methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase|SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 G3DSA:3.40.50.150|PF01189|PR02008|SSF53335 AFA_07535 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005804 Fatty acid desaturase domain GO:0006629 PF00487 AFA_07540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013986|IPR014017|IPR027417|IPR034739 DExx box DNA helicase domain superfamily|P-loop containing nucleoside triphosphate hydrolase|UvrD-like DNA helicase, C-terminal|UvrD/AddA helicase, N-terminal GO:0005524|GO:0016787 G3DSA:1.10.10.160|G3DSA:1.10.486.10|G3DSA:3.40.50.300|PF00580|PF13361|SSF52540 AFA_07545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000572|IPR005066|IPR008335|IPR014756|IPR036374 Eukaryotic molybdopterin oxidoreductase|Immunoglobulin E-set|Moybdenum cofactor oxidoreductase, dimerisation|Oxidoreductase, molybdopterin-binding domain|Oxidoreductase, molybdopterin-binding domain superfamily GO:0016491|GO:0030151|GO:0042128|GO:0055114 G3DSA:2.60.40.650|G3DSA:3.90.420.10|PF00174|PF03404|PR00407|SSF56524|SSF81296 AFA_07550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008168|IPR009056|IPR036909 Cytochrome c, class IC|Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0005506|GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF13442|PR00605|SSF46626 AFA_07555 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018946|IPR038607 Alkaline phosphatase D-related|PhoD-like superfamily G3DSA:3.60.21.70|PF09423|SSF56300 AFA_07565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR032781 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-transporter extension domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12848|PS00211|SM00382|SSF52540 AFA_07570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002052|IPR004556|IPR007848|IPR017127|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|Methyltransferase small domain|Modification methylase HemK|Ribosomal protein L3-specific, glutamine-N5-methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0005622|GO:0006479|GO:0008168|GO:0008276|GO:0009007|GO:0032259|GO:0032775 G3DSA:1.10.8.10|G3DSA:3.40.50.150|MF_02125|PF05175|PIRSF037167|PS00092|SSF53335|TIGR00536|TIGR03533 AFA_07575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001261|IPR002933|IPR005941|IPR011650|IPR036264 ArgE/DapE/ACY1/CPG2/YscS, conserved site|Bacterial exopeptidase dimerisation domain|Peptidase M20|Peptidase M20, dimerisation domain|Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0006508|GO:0008237|GO:0009014|GO:0009089|GO:0016787 G3DSA:3.30.70.360|G3DSA:3.40.630.10|MF_01690|PF01546|PF07687|PS00759|SSF53187|SSF55031|TIGR01246 AFA_07580 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001451|IPR005664|IPR011004|IPR018357|IPR023180|IPR037133 Hexapeptide repeat|Hexapeptide transferase, conserved site|Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family|Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily|Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1|Trimeric LpxA-like superfamily GO:0008666|GO:0009089|GO:0016740 G3DSA:1.10.166.10|G3DSA:2.160.10.10|MF_00811|PF00132|PF14602|PF14805|PS00101|SSF51161|TIGR00965 AFA_07590 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003313|IPR009057|IPR011051|IPR014710|IPR018060|IPR020449 AraC-type arabinose-binding/dimerisation domain|DNA binding HTH domain, AraC-type|Homeobox-like domain superfamily|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold|Transcription regulator HTH, AraC- type GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:2.60.120.10|PF02311|PF12833|PR00032|SM00342|SSF46689|SSF51182 AFA_07595 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002781 Transmembrane protein TauE-like GO:0016021 PF01925 AFA_07600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004680|IPR006037|IPR031312|IPR036721 Citrate transporter-like domain|Regulator of K+ conductance, C-terminal|Regulator of K+ conductance, C-terminal domain superfamily|Sodium/sulphate symporter, conserved site GO:0006813|GO:0008324|GO:0016021|GO:0055085 G3DSA:3.30.70.1450|PF02080|PF03600|PS01271|SSF116726 AFA_07605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003736|IPR006683|IPR029069 HotDog domain superfamily|Phenylacetic acid degradation-related domain|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637|TIGR00369 AFA_07615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009468 Protein of unknown function DUF1090 PF06476|SSF58100 AFA_07620 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001604|IPR020821 DNA/RNA non-specific endonuclease|Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 G3DSA:3.40.570.10|PF01223|SM00477|SM00892|SSF54060 AFA_07635 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002657|IPR038770 Bile acid:sodium symporter/arsenical resistance protein Acr3|Sodium/solute symporter superfamily GO:0016020 G3DSA:1.20.1530.20|PF01758 AFA_07640 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003211|IPR038523 AmiS/UreI transporter|AmiS/UreI transporter superfamily GO:0016020 G3DSA:1.25.40.600|PF02293 AFA_07645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000551|IPR009061|IPR010211 MerR-type HTH domain|Putative DNA-binding domain superfamily|Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 G3DSA:1.10.1660.10|PF13411|PR00040|PS00552|SM00422|SSF46955|TIGR01950 AFA_07650 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|G3DSA:1.20.1720.10|PF07690|SSF103473 AFA_07665 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 AFA_07670 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001179|IPR005215|IPR008880|IPR008881|IPR027304|IPR036611|IPR037041 FKBP-type peptidyl-prolyl cis-trans isomerase domain|Trigger factor|Trigger factor ribosome-binding domain superfamily|Trigger factor, C-terminal|Trigger factor, C-terminal domain superfamily|Trigger factor, ribosome-binding, bacterial|Trigger factor/SurA domain superfamily GO:0006457|GO:0015031 G3DSA:1.10.3120.10|G3DSA:3.10.50.40|G3DSA:3.30.70.1050|MF_00303|PF00254|PF05697|PF05698|PIRSF003095|SSF102735|SSF109998|SSF54534|TIGR00115 AFA_07675 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001907|IPR023562|IPR029045|IPR033135 ATP-dependent Clp protease proteolytic subunit|Clp protease proteolytic subunit /Translocation-enhancing protein TepA|ClpP, histidine active site|ClpP/crotonase-like domain superfamily GO:0004252|GO:0006508 G3DSA:3.90.226.10|MF_00444|PF00574|PR00127|PS00382|SSF52096|TIGR00493 AFA_07680 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003593|IPR003959|IPR004487|IPR010603|IPR019489|IPR027417|IPR038366 AAA+ ATPase domain|ATPase, AAA-type, core|Clp ATPase, C-terminal|Clp protease, ATP-binding subunit ClpX|P-loop containing nucleoside triphosphate hydrolase|Zinc finger, ClpX C4-type|Zinc finger, ClpX C4-type superfamily GO:0005524|GO:0006457|GO:0008270|GO:0046983|GO:0051082 G3DSA:1.10.8.60|G3DSA:3.30.50.30|G3DSA:3.40.50.300|MF_00175|PF06689|PF07724|PF10431|SM00382|SM00994|SM01086|SSF52540|SSF57716|TIGR00382 AFA_07685 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003111|IPR003593|IPR003959|IPR004815|IPR008268|IPR008269|IPR014721|IPR015947|IPR020568|IPR027417|IPR027543 AAA+ ATPase domain|ATPase, AAA-type, core|Lon protease, bacterial|Lon protease, bacterial/eukaryotic-type|Lon, substrate-binding domain|P-loop containing nucleoside triphosphate hydrolase|PUA-like superfamily|Peptidase S16, Lon proteolytic domain|Peptidase S16, active site|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 G3DSA:1.10.8.60|G3DSA:1.20.58.1480|G3DSA:2.30.130.40|G3DSA:3.30.230.10|G3DSA:3.40.50.300|MF_01973|PF00004|PF02190|PF05362|PIRSF001174|PR00830|PS01046|SM00382|SM00464|SSF52540|SSF54211|SSF88697|TIGR00763 AFA_07690 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006197|IPR006199|IPR006200|IPR015927|IPR036286|IPR036388|IPR036390 LexA repressor, DNA-binding domain|LexA/Signal peptidase-like superfamily|Peptidase S24, LexA-like|Peptidase S24/S26A/S26B/S26C|Transcription regulator LexA|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004252|GO:0006355|GO:0006508|GO:0009432|GO:0045892 G3DSA:1.10.10.10|G3DSA:2.10.109.10|MF_00015|PF00717|PF01726|PR00726|SSF46785|SSF51306|TIGR00498 AFA_07695 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF13302|SSF55729 AFA_07700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000796|IPR004838|IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Aminotransferases, class-I, pyridoxal-phosphate-binding site|Aspartate/other aminotransferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0006520|GO:0008483|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PR00799|PS00105|SSF53383 AFA_07705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001650|IPR001943|IPR004807|IPR006935|IPR014001|IPR024759|IPR027417|IPR036876 Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|Helicase/UvrB, N-terminal|P-loop containing nucleoside triphosphate hydrolase|UVR domain|UVR domain superfamily|UvrABC system, subunit B|UvrB, YAD/RRR-motif-containing domain GO:0003677|GO:0005515|GO:0005524|GO:0006289|GO:0009380|GO:0016787|GO:0016887 G3DSA:3.40.50.300|G3DSA:4.10.860.10|MF_00204|PF00271|PF02151|PF04851|PF12344|SM00487|SM00490|SSF46600|SSF52540|TIGR00631 AFA_07710 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017867|IPR023485|IPR036196 Phosphotyrosine protein phosphatase I|Phosphotyrosine protein phosphatase I superfamily|Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 G3DSA:3.40.50.2300|PF01451|PR00719|SM00226|SSF52788 AFA_07715 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000944|IPR010242|IPR036388|IPR036390 Transcription factor HTH, IscR|Transcription regulator Rrf2-type|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003690|GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF02082|SSF46785|TIGR00738|TIGR02010 AFA_07720 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000192|IPR010240|IPR015421|IPR015422|IPR015424|IPR016454|IPR020578 Aminotransferase class V domain|Aminotransferase class-V, pyridoxal-phosphate binding site|Cysteine desulfurase|Cysteine desulfurase IscS|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0030170|GO:0031071|GO:0044571 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00331|PF00266|PIRSF005572|PS00595|SSF53383 AFA_07725 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 G3DSA:3.90.1010.10|PF01592|SSF82649 AFA_07730 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000361|IPR016092|IPR017870|IPR035903 FeS cluster biogenesis|FeS cluster insertion protein|FeS cluster insertion, C-terminal, conserved site|HesB-like domain superfamily GO:0005198|GO:0051536|GO:0097428 G3DSA:2.60.300.12|PF01521|PS01152|SSF89360|TIGR00049 AFA_07735 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018148|IPR036914 Methylglyoxal synthase, active site|Methylglyoxal synthase-like domain superfamily GO:0008929|GO:0019242 G3DSA:3.40.50.1380|PS01335|SSF52335 AFA_07740 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_07745 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002313|IPR004364|IPR004365|IPR012340|IPR018149 Aminoacyl-tRNA synthetase, class II (D/K/N)|Lysine-tRNA ligase, class II|Lysyl-tRNA synthetase, class II, C-terminal|Nucleic acid-binding, OB-fold|OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0000166|GO:0003676|GO:0004812|GO:0004824|GO:0005524|GO:0005737|GO:0006418|GO:0006430 G3DSA:2.40.50.140|G3DSA:3.30.930.10|MF_00252|PF00152|PF01336|PR00982|SSF50249|SSF55681|TIGR00499 AFA_07750 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF00106|PR00081|SSF51735 AFA_07760 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004089|IPR004090 Chemotaxis methyl-accepting receptor|Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004888|GO:0006935|GO:0007165|GO:0016020 G3DSA:1.10.287.950|PF00015|PR00260|SM00283|SSF58104 AFA_07765 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004368|IPR006196|IPR012340 Nucleic acid-binding, OB-fold|RNA-binding domain, S1, IF1 type|Translation initiation factor IF-1 GO:0003723|GO:0003743|GO:0006413 G3DSA:2.40.50.140|MF_00075|PF01176|SSF50249|TIGR00008 AFA_07770 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 AFA_07775 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002657|IPR038770 Bile acid:sodium symporter/arsenical resistance protein Acr3|Sodium/solute symporter superfamily GO:0016020 G3DSA:1.20.1530.20|PF01758 AFA_07780 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 AFA_07785 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001667|IPR003156|IPR004610|IPR038763 Bacterial RecJ exonuclease|DDH domain|DHH phosphoesterase superfamily|DHHA1 domain GO:0003676|GO:0006281|GO:0006310|GO:0008409 G3DSA:2.40.50.460|G3DSA:3.10.310.30|G3DSA:3.90.1640.30|PF01368|PF02272|SSF64182|TIGR00644 AFA_07795 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003838|IPR011925|IPR025857 ABC transporter permease protein domain|Lipoprotein-releasing system transmembrane protein LolC/E|MacB-like periplasmic core domain GO:0016020|GO:0016021|GO:0042953|GO:0042954 PF02687|PF12704|TIGR02212 AFA_07800 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_07805 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001130|IPR018228|IPR032466 Deoxyribonuclease, TatD-related, conserved site|Metal-dependent hydrolase|TatD family GO:0016788|GO:0016888 G3DSA:3.20.20.140|PF01026|PIRSF005902|PS01137|SSF51556 AFA_07810 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001279|IPR004477|IPR004797|IPR025405|IPR036866 ComEC/Rec2-related protein|Competence protein ComEC/Rec2|Domain of unknown function DUF4131|Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like GO:0016021|GO:0030420 G3DSA:3.60.15.10|PF00753|PF03772|PF13567|SM00849|SSF56281|TIGR00360|TIGR00361 AFA_07815 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF12697|PR00111|SSF53474 AFA_07820 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003141|IPR004013|IPR016195 PHP domain|Polymerase/histidinol phosphatase, N-terminal|Polymerase/histidinol phosphatase-like GO:0003824 G3DSA:1.10.150.650|G3DSA:3.20.20.140|PF02811|SM00481|SSF89550 AFA_07825 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001437|IPR006358|IPR018151|IPR022691|IPR023459|IPR028624|IPR036805|IPR036953 Transcription elongation factor GreA/GreB|Transcription elongation factor GreA/GreB family|Transcription elongation factor GreA/GreB, C-terminal domain superfamily|Transcription elongation factor GreB|Transcription elongation factor, GreA/GreB, C-terminal|Transcription elongation factor, GreA/GreB, N-terminal|Transcription elongation factor, GreA/GreB, N-terminal domain superfamily|Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784|GO:0070063 G3DSA:1.10.287.180|G3DSA:3.10.50.30|MF_00105|MF_00930|PF01272|PF03449|PIRSF006092|PS00829|PS00830|SSF46557|SSF54534|TIGR01461 AFA_07830 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010073|IPR010918|IPR029062|IPR036604|IPR036676|IPR036921 Class I glutamine amidotransferase-like|Phosphoribosylformylglycinamidine synthase|Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily|PurM-like, C-terminal domain|PurM-like, C-terminal domain superfamily|PurM-like, N-terminal domain superfamily GO:0004642|GO:0006189 G3DSA:1.10.8.750|G3DSA:3.30.1330.10|G3DSA:3.40.50.880|G3DSA:3.90.650.10|MF_00419|PF02769|PF13507|SM01211|SSF109736|SSF52317|SSF55326|SSF56042|SSF82697|TIGR01735 AFA_07835 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000644|IPR001093|IPR005990|IPR013785|IPR015875 Aldolase-type TIM barrel|CBS domain|IMP dehydrogenase / GMP reductase, conserved site|IMP dehydrogenase/GMP reductase|Inosine-5'-monophosphate dehydrogenase GO:0003824|GO:0003938|GO:0006164|GO:0016491|GO:0055114 G3DSA:3.20.20.70|MF_01964|PF00478|PF00571|PIRSF000130|PS00487|SM00116|SM01240|SSF51412|SSF54631|TIGR01302 AFA_07840 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF12697|SSF53474 AFA_07845 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001674|IPR004739|IPR014729|IPR017926|IPR022310|IPR022955|IPR029062 Class I glutamine amidotransferase-like|GMP synthase|GMP synthase, C-terminal|GMP synthase, glutamine amidotransferase|Glutamine amidotransferase|NAD/GMP synthase|Rossmann-like alpha/beta/alpha sandwich fold GO:0003922|GO:0005524|GO:0006164|GO:0006177 G3DSA:3.30.300.10|G3DSA:3.40.50.620|G3DSA:3.40.50.880|MF_00344|PF00117|PF00958|PF02540|SSF52317|SSF52402|SSF54810|TIGR00884|TIGR00888 AFA_07850 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002104|IPR010998|IPR011010|IPR013762|IPR025166|IPR038488 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain|Integrase, DNA-binding domain superfamily|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|G3DSA:3.30.160.390|PF00589|PF13356|SSF56349 AFA_07855 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009061|IPR010260 DNA-binding transcriptional activator AlpA|Putative DNA-binding domain superfamily PF05930|SSF46955 AFA_07860 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13481|SSF52540 AFA_07865 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010522 Replication protein C, bacterial PF06504 AFA_07870 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010985|IPR013321 Arc-type ribbon-helix-helix|Ribbon-helix-helix GO:0006355 G3DSA:1.10.1220.10|SSF47598 AFA_07875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014147 Type IV conjugative transfer protein TrbJ SSF101082|TIGR02780 AFA_07880 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR027584 Entry exclusion lipoprotein TrbK TIGR04359 AFA_07885 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007688|IPR014150 Conjugal transfer, TrbL|Plasmid conjugal transfer TrbL/VirB6 GO:0030255 PF04610|TIGR02783 AFA_07895 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR024640 Toxin-antitoxin type 1 system, toxin component PF12703 AFA_07905 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002657|IPR004706|IPR038770 Arsenical-resistance protein Acr3|Bile acid:sodium symporter/arsenical resistance protein Acr3|Sodium/solute symporter superfamily GO:0015103|GO:0015297|GO:0016020|GO:0016021 G3DSA:1.20.1530.20|PF01758|PIRSF005508|TIGR00832 AFA_07910 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023485|IPR036196 Phosphotyrosine protein phosphatase I|Phosphotyrosine protein phosphatase I superfamily G3DSA:3.40.50.2300|PF01451|SM00226|SSF52788 AFA_07915 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005025|IPR014063|IPR029039 Arsenate resistance ArsH|Flavoprotein-like superfamily|NADPH-dependent FMN reductase-like GO:0016491 G3DSA:3.40.50.360|PF03358|SSF52218|TIGR02690 AFA_07920 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001845|IPR036388|IPR036390 HTH ArsR-type DNA-binding domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF12840|PR00778|SM00418|SSF46785 AFA_07925 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006118|IPR006119|IPR006120|IPR036162 Recombinase, conserved site|Resolvase, HTH domain|Resolvase, N-terminal catalytic domain|Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 G3DSA:3.40.50.1390|PF00239|PF02796|PS00397|PS00398|SM00857|SSF53041 AFA_07935 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007069|IPR026889 Transposase zinc-binding domain|Transposase, IS801/IS1294 GO:0003677|GO:0004803|GO:0006313 PF04986|PF14319 AFA_07945 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005844|IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III|Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 G3DSA:3.40.120.10|PF02878|SSF53738 AFA_07950 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000489|IPR006390|IPR011005 Dihydropteroate synthase|Dihydropteroate synthase-like|Pterin-binding domain GO:0004156|GO:0009396|GO:0042558|GO:0044237 G3DSA:3.20.20.20|PF00809|PS00792|PS00793|SSF51717|TIGR01496 AFA_07960 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005065|IPR016986|IPR029058 Alpha/Beta hydrolase fold|Platelet-activating factor acetylhydrolase-like|Uncharacterised conserved protein UCP031982, alpha/beta hydrolase, XabL GO:0003847|GO:0016042 G3DSA:3.40.50.1820|PF03403|PIRSF031982|SSF53474 AFA_07965 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_07970 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002629|IPR006276|IPR013215|IPR038071 Cobalamin-independent methionine synthase|Cobalamin-independent methionine synthase MetE, C-terminal/archaeal|Cobalamin-independent methionine synthase MetE, N-terminal|UROD/MetE-like superfamily GO:0003871|GO:0008270|GO:0008652|GO:0009086 G3DSA:3.20.20.210|MF_00172|PF01717|PF08267|PIRSF000382|SSF51726|TIGR01371 AFA_07980 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015004 Protein of unknown function DUF1852 PF08908|PIRSF034367 AFA_07985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002629|IPR016456|IPR038071 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal|Predicted cobalamin-independent methionine synthase, catalytic subunit|UROD/MetE-like superfamily GO:0003871|GO:0008270|GO:0009086 G3DSA:3.20.20.210|PF01717|PIRSF005632|SSF51726 AFA_07990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001647|IPR009057|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PR00455|SSF46689|SSF48498 AFA_07995 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR036250 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0055114 G3DSA:1.20.140.10|G3DSA:2.40.110.20|PF00441|PF02770|PS00073|SSF47203|SSF56645 AFA_08000 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004360|IPR026275|IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/dioxygenase/EhpR|Glyoxalase/fosfomycin resistance/dioxygenase domain G3DSA:3.30.720.110|G3DSA:3.30.720.120|PF00903|PIRSF039020|SSF54593 AFA_08005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013196|IPR026881|IPR036388|IPR036390 Helix-turn-helix, type 11|WYL domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily G3DSA:1.10.10.10|PF08279|PF13280|SSF46785 AFA_08010 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003495|IPR011629|IPR027417 CobW/HypB/UreG, nucleotide-binding domain|Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF02492|PF07683|SM00833|SSF52540 AFA_08015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003801|IPR022838 GTP cyclohydrolase FolE2|GTP cyclohydrolase FolE2/MptA GO:0003933|GO:0003934|GO:0035998 MF_01527_B|PF02649 AFA_08020 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002696 Putative membrane protein insertion efficiency factor MF_00386|PD004225|PF01809|SM01234|TIGR00278 AFA_08025 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003808 Fe-S metabolism associated domain, SufE-like G3DSA:3.90.1010.10|PF02657|SSF82649 AFA_08030 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002195|IPR006680|IPR011059|IPR032466 Amidohydrolase-related|Dihydroorotase, conserved site|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain superfamily GO:0016787|GO:0016810|GO:0016812 G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF01979|PS00483|SSF51338|SSF51556|TIGR00857 AFA_08035 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002481|IPR036388|IPR036390 Ferric-uptake regulator|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.1490.190|PF01475|SSF46785 AFA_08040 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002496|IPR026660|IPR038019 Phosphoribosyl-AMP cyclohydrolase|Phosphoribosyl-AMP cyclohydrolase domain|Phosphoribosyl-AMP cyclohydrolase domain superfamily GO:0000105|GO:0004635 G3DSA:3.10.20.400|MF_01021|PD002610|PF01502|SSF141734 AFA_08045 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004399|IPR013749|IPR029056 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase|Pyridoxamine kinase/Phosphomethylpyrimidine kinase|Ribokinase-like GO:0008972|GO:0009228 G3DSA:3.40.1190.20|PF08543|SSF53613|TIGR00097 AFA_08050 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000086|IPR015797|IPR020084|IPR020476 NUDIX hydrolase|NUDIX hydrolase domain|NUDIX hydrolase, conserved site|NUDIX hydrolase-like domain superfamily GO:0016787 G3DSA:3.90.79.10|PF00293|PR00502|PS00893|SSF55811 AFA_08055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014347|IPR037479 Tautomerase, MSAD family|Tautomerase/MIF superfamily G3DSA:3.30.429.10|PF14552|SSF55331 AFA_08060 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009050|IPR012292 Globin-like superfamily|Globin/Protoglobin GO:0019825|GO:0020037 G3DSA:1.10.490.10|SSF46458 AFA_08065 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011577|IPR016174 Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane GO:0009055|GO:0016020|GO:0016021|GO:0022904 PF01292|SSF81342 AFA_08070 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004136|IPR013785 Aldolase-type TIM barrel|Nitronate monooxygenase GO:0003824|GO:0018580|GO:0055114 G3DSA:3.20.20.70|PF03060|SSF51412 AFA_08080 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003313|IPR009057|IPR011051|IPR018060|IPR018062|IPR020449 AraC-type arabinose-binding/dimerisation domain|DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox-like domain superfamily|RmlC-like cupin domain superfamily|Transcription regulator HTH, AraC- type GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF02311|PF12833|PR00032|PS00041|SM00342|SSF46689|SSF51182 AFA_08095 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018146|IPR029068 Glyoxalase I, conserved site|Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase GO:0004462|GO:0046872 G3DSA:3.10.180.10|PF13669|PS00934|SSF54593 AFA_08100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004045|IPR004046|IPR036249|IPR036282 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF02798|SSF47616|SSF52833 AFA_08105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 AFA_08110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007348|IPR008457|IPR014756 CopC domain|Copper resistance protein D|Immunoglobulin E-set GO:0005507|GO:0016021|GO:0042597|GO:0046688 G3DSA:2.60.40.1220|PF04234|PF05425|SSF81296 AFA_08115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012533|IPR038507 YcnI-like|YcnI-like superfamily G3DSA:2.60.40.2230|PF07987 AFA_08125 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004045|IPR036249|IPR036282 Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF02798|SSF47616|SSF52833 AFA_08130 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001907|IPR023562|IPR029045|IPR033135 ATP-dependent Clp protease proteolytic subunit|Clp protease proteolytic subunit /Translocation-enhancing protein TepA|ClpP, histidine active site|ClpP/crotonase-like domain superfamily GO:0004252|GO:0006508 G3DSA:3.90.226.10|MF_00444|PF00574|PR00127|PS00382|SSF52096 AFA_08135 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007655|IPR011990 Protein of unknown function DUF560|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|PF04575|SSF48452 AFA_08140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel G3DSA:2.40.160.90|SSF56925 AFA_08145 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR010917|IPR012910|IPR037066 TonB-dependent receptor, conserved site|TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel G3DSA:2.170.130.10|PF00593|PF07715|PS01156|SSF56935 AFA_08150 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009057|IPR018060 DNA binding HTH domain, AraC-type|Homeobox-like domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12833|SM00342|SSF46689 AFA_08155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001077|IPR029063 O-methyltransferase, family 2|S-adenosyl-L-methionine-dependent methyltransferase GO:0008171 G3DSA:3.40.50.150|PF00891|SSF53335 AFA_08160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_08165 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000594|IPR001763|IPR035985|IPR036873 Rhodanese-like domain|Rhodanese-like domain superfamily|THIF-type NAD/FAD binding fold|Ubiquitin-activating enzyme GO:0008641 G3DSA:3.40.250.10|G3DSA:3.40.50.720|PF00581|PF00899|SM00450|SSF52821|SSF69572 AFA_08170 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000555|IPR028090 JAB domain, prokaryotic|JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 G3DSA:3.40.140.10|PF14464|SM00232|SSF102712 AFA_08175 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003749|IPR012675|IPR016155 Beta-grasp domain superfamily|Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp|Sulfur carrier ThiS/MoaD-like G3DSA:3.10.20.30|PF02597|SSF54285 AFA_08180 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 AFA_08185 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|SSF56801 AFA_08190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|SSF47203|SSF56645 AFA_08195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_08200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008928|IPR012341 Six-hairpin glycosidase superfamily|Six-hairpin glycosidase-like superfamily GO:0003824 G3DSA:1.50.10.10|SSF48208 AFA_08205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003787|IPR027396 DsrEFH-like|Sulphur relay, DsrE/F-like protein G3DSA:3.40.1260.10|PF02635|SSF75169 AFA_08210 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003779|IPR004675|IPR029032 AhpD-like|Alkylhydroperoxidase AhpD core|Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 G3DSA:1.20.1290.10|PF02627|SSF69118|TIGR00778 AFA_08215 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001845|IPR036388|IPR036390 HTH ArsR-type DNA-binding domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01022|PR00778|SM00418|SSF46785 AFA_08220 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021309 Protein of unknown function DUF2892 PF11127 AFA_08230 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003313|IPR009057|IPR011051|IPR014710|IPR018060|IPR018062 AraC-type arabinose-binding/dimerisation domain|DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox-like domain superfamily|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:2.60.120.10|PF02311|PF12833|PS00041|SM00342|SSF46689|SSF51182 AFA_08235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000891|IPR002034|IPR005668|IPR013709|IPR013785|IPR036230 2-isopropylmalate synthase|2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain|2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily|Aldolase-type TIM barrel|Alpha-isopropylmalate/homocitrate synthase, conserved site|Pyruvate carboxyltransferase GO:0003824|GO:0003852|GO:0009098|GO:0019752|GO:0046912 G3DSA:3.20.20.70|G3DSA:3.30.160.270|MF_00572|PF00682|PF08502|PS00815|PS00816|SM00917|SSF110921|SSF51569|SSF89000 AFA_08240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_08245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013341|IPR013342|IPR013370|IPR018110|IPR029017|IPR029065|IPR036849 Enolase C-terminal domain-like|Enolase-like, C-terminal domain superfamily|Enolase-like, N-terminal|Mandelate racemase/muconate lactonizing enzyme, C-terminal|Mandelate racemase/muconate lactonizing enzyme, N-terminal domain|Mandelate racemase/muconate lactonizing enzyme, conserved site|Muconate/chloromuconate cycloisomerase GO:0009063|GO:0018849|GO:0018850|GO:0030145 G3DSA:3.20.20.120|G3DSA:3.30.390.10|PF02746|PF13378|PS00908|PS00909|SM00922|SSF51604|SSF54826|TIGR02534 AFA_08250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000627|IPR007535|IPR012801|IPR015889 Catechol 1,2-dioxygenase, proteobacteria|Catechol dioxygenase, N-terminal|Intradiol ring-cleavage dioxygenase, C-terminal|Intradiol ring-cleavage dioxygenase, core GO:0003824|GO:0005506|GO:0006725|GO:0008199|GO:0009712|GO:0016702|GO:0018576|GO:0019614|GO:0055114 G3DSA:2.60.130.10|PF00775|PF04444|PS00083|SSF49482|TIGR02439 AFA_08255 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004163|IPR004165|IPR012792|IPR037171 3-oxoacid CoA-transferase, subunit A|Coenzyme A transferase binding site|Coenzyme A transferase family I|NagB/RpiA transferase-like GO:0008410 G3DSA:3.40.1080.10|PF01144|PS01273|SM00882|SSF100950|TIGR02429 AFA_08260 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004164|IPR004165|IPR012791|IPR037171 3-oxoacid CoA-transferase, subunit B|Coenzyme A transferase active site|Coenzyme A transferase family I|NagB/RpiA transferase-like GO:0008410 G3DSA:3.40.1080.10|PF01144|PS01274|SM00882|SSF100950|TIGR02428 AFA_08265 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000073|IPR000639|IPR026968|IPR029058 3-oxoadipate enol-lactonase 1/2|Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Epoxide hydrolase-like GO:0003824|GO:0042952|GO:0047570 G3DSA:3.40.50.1820|PF00561|PR00111|PR00412|SSF53474|TIGR02427 AFA_08270 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003464|IPR011008|IPR026029 Dimeric alpha-beta barrel|Muconolactone delta-isomerase|Muconolactone isomerase domain GO:0006725 G3DSA:3.30.70.1060|PD006619|PF02426|PIRSF001486|SSF54909|TIGR03221 AFA_08275 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 PF03594|TIGR00843 AFA_08280 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006073|IPR027417 GTP binding domain|P-loop containing nucleoside triphosphate hydrolase GO:0005525 G3DSA:3.40.50.300|PF01926|SSF52540 AFA_08285 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006073|IPR027417 GTP binding domain|P-loop containing nucleoside triphosphate hydrolase GO:0005525 G3DSA:3.40.50.300|PF01926|SSF52540 AFA_08290 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 PF02535 AFA_08300 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR027417 ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SSF52540 AFA_08305 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000286|IPR023696|IPR023801|IPR037138 Histone deacetylase domain|Histone deacetylase domain superfamily|Histone deacetylase family|Ureohydrolase domain superfamily G3DSA:3.40.800.20|PF00850|PR01270|SSF52768 AFA_08310 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000792|IPR016032|IPR036388 Signal transduction response regulator, C-terminal effector|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF00196|PR00038|SM00421|SSF46894 AFA_08315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001189|IPR019831|IPR019832|IPR019833|IPR036314|IPR036324 Manganese/iron superoxide dismutase|Manganese/iron superoxide dismutase, C-terminal|Manganese/iron superoxide dismutase, C-terminal domain superfamily|Manganese/iron superoxide dismutase, N-terminal|Manganese/iron superoxide dismutase, N-terminal domain superfamily|Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 G3DSA:1.10.287.990|G3DSA:2.40.500.20|PF00081|PF02777|PIRSF000349|PR01703|PS00088|SSF46609|SSF54719 AFA_08320 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|SSF48452 AFA_08325 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:2.60.120.380 AFA_08330 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR024078 Putative deacetylase LmbE-like domain superfamily G3DSA:3.40.50.10320|SSF102588|SSF89372 AFA_08335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related PF02585 AFA_08340 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010266 NnrS PF05940 AFA_08345 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR036388|IPR036390 MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01047|PR00598|SM00347|SSF46785 AFA_08350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002938|IPR036188 FAD-binding domain|FAD/NAD(P)-binding domain superfamily GO:0071949 G3DSA:3.50.50.60|PF01494|PR00420|SSF51905|SSF54373 AFA_08355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_08365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001608|IPR011078|IPR029066 Alanine racemase, N-terminal|PLP-binding barrel|Pyridoxal phosphate homeostasis protein GO:0030170 G3DSA:3.20.20.10|MF_02087|PF01168|PIRSF004848|SSF51419|TIGR00044 AFA_08370 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR004839|IPR015421|IPR015422|IPR015424|IPR036388|IPR036390 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0003824|GO:0006355|GO:0009058|GO:0030170 G3DSA:1.10.10.10|G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PF00392|SM00345|SSF46785|SSF53383 AFA_08375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 AFA_08380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR036388|IPR036390 MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF12802|PR00598|SM00347|SSF46785 AFA_08385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011856|IPR014883 VRR-NUC domain|tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518|GO:0016788 G3DSA:3.40.1350.10|PF08774|SM00990 AFA_08390 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006554|IPR006555|IPR010614|IPR027417 ATP-dependent helicase, C-terminal|DEAD2|Helicase-like, DEXD box c2 type|P-loop containing nucleoside triphosphate hydrolase GO:0003676|GO:0003677|GO:0004003|GO:0005524|GO:0006139|GO:0008026|GO:0016818 G3DSA:1.10.275.30|G3DSA:3.40.50.300|PF06733|PF13307|SM00488|SM00491|SSF52540 AFA_08395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006076|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905|SSF54373 AFA_08400 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003953|IPR005288|IPR027477|IPR036188|IPR037099 FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain superfamily|Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily|L-aspartate oxidase|Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily GO:0005737|GO:0008734|GO:0009435|GO:0016491|GO:0055114 G3DSA:1.20.58.100|G3DSA:3.50.50.60|G3DSA:3.90.700.10|PF00890|PR00368|SSF46977|SSF51905|SSF56425|TIGR00551 AFA_08405 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003473|IPR036094 Quinolinate synthetase A|Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 G3DSA:3.40.50.10800|PF02445|SSF142754|TIGR00550 AFA_08410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023210|IPR036812 NADP-dependent oxidoreductase domain|NADP-dependent oxidoreductase domain superfamily G3DSA:3.20.20.100|PF00248|SSF51430 AFA_08415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005358 Putative zinc- or iron-chelating domain containing protein PF03692 AFA_08425 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004254|IPR005744 AdipoR/Haemolysin-III-related|Hly-III GO:0016021|GO:0019835 PF03006|TIGR01065 AFA_08430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010879|IPR036913 Domain of unknown function DUF1508|YegP-like superfamily G3DSA:3.30.160.160|PF07411|SSF160113 AFA_08435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000485|IPR005471|IPR011008|IPR019887|IPR019888|IPR036388|IPR036390 AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF09339|PF13404|PR00033|PS00356|SM00344|SSF46785|SSF54909 AFA_08440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005829|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PS00216|PS00217|SSF103473 AFA_08445 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR020556|IPR023631|IPR036928 Amidase signature (AS) superfamily|Amidase signature domain|Amidase, conserved site G3DSA:3.90.1300.10|PF01425|PS00571|SSF75304 AFA_08455 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006175|IPR035959 RutC-like superfamily|YjgF/YER057c/UK114 family G3DSA:3.30.1330.40|PF01042|SSF55298 AFA_08460 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006913|IPR011057 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V|Mss4-like superfamily GO:0016846 G3DSA:2.170.150.70|PF04828|SSF51316 AFA_08465 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000566|IPR012674|IPR022271 Calycin|Lipocalin, ApoD type|Lipocalin/cytosolic fatty-acid binding domain G3DSA:2.40.128.20|PF08212|PIRSF036893|SSF50814 AFA_08470 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001638|IPR018313 Solute-binding protein family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site G3DSA:3.40.190.10|PF00497|PS01039|SM00062|SSF53850 AFA_08475 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 AFA_08480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 AFA_08485 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540 AFA_08510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002078|IPR002197|IPR003593|IPR004096|IPR009057|IPR010523|IPR024096|IPR025662|IPR027417 4-vinyl reductase, 4VR|AAA+ ATPase domain|Activator of aromatic catabolism|DNA binding HTH domain, Fis-type|Homeobox-like domain superfamily|NO signalling/Golgi transport ligand-binding domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1 GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.1380.20|G3DSA:3.40.50.300|PD485437|PF00158|PF02830|PF02954|PF06505|PR01590|PS00675|SM00382|SM00989|SSF111126|SSF46689|SSF52540 AFA_08515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010353 Phenol hydroxylase subunit PD468738|PF06099|PIRSF000039 AFA_08520 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003430|IPR009078|IPR012078|IPR012348 Ferritin-like superfamily|Methane/phenol monooxygenase, hydroxylase component|Methane/phenol/toluene hydroxylase|Ribonucleotide reductase-like GO:0006725|GO:0016491|GO:0016709|GO:0055114 G3DSA:1.10.620.20|PF02332|PIRSF000040|SSF47240 AFA_08525 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003454|IPR036889 Monooxygenase component MmoB/DmpM|Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 G3DSA:3.90.56.10|PD004249|PF02406|SSF56029 AFA_08530 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003430|IPR007029|IPR009078|IPR012348 Ferritin-like superfamily|Methane/phenol/toluene hydroxylase|Ribonucleotide reductase-like|YHS domain GO:0006725|GO:0016491|GO:0055114 G3DSA:1.10.620.20|PF02332|PF04945|SSF47240 AFA_08535 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006756 Phenol hydroxylase G3DSA:3.10.20.560|PF04663 AFA_08540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001041|IPR001221|IPR001433|IPR006058|IPR008333|IPR012675|IPR017938|IPR036010|IPR039261 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain|Oxidoreductase FAD/NAD(P)-binding|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel GO:0009055|GO:0016491|GO:0051536|GO:0051537|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00111|PF00175|PF00970|PR00410|PS00197|SSF52343|SSF54292|SSF63380 AFA_08545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001663|IPR015879|IPR017941|IPR036922 Aromatic-ring-hydroxylating dioxygenase, alpha subunit|Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain|Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0005506|GO:0016491|GO:0044237|GO:0051537|GO:0055114 G3DSA:2.102.10.10|G3DSA:3.90.380.10|PF00355|PF00848|PR00090|SSF50022|SSF55961 AFA_08550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003736|IPR006683|IPR029069 HotDog domain superfamily|Phenylacetic acid degradation-related domain|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637|TIGR00369 AFA_08555 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_08560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001663|IPR015879|IPR015881|IPR017941|IPR036922 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site|Aromatic-ring-hydroxylating dioxygenase, alpha subunit|Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain|Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0005506|GO:0016491|GO:0044237|GO:0051537|GO:0055114 G3DSA:2.102.10.10|G3DSA:3.90.380.10|PF00355|PF00848|PR00090|PS00570|SSF50022|SSF55961 AFA_08565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000391|IPR017641|IPR032710 Benzoate 1,2-dioxygenase, small subunit|NTF2-like domain superfamily|Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 G3DSA:3.10.450.50|PF00866|SSF54427|TIGR03232 AFA_08570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001041|IPR001221|IPR001433|IPR001709|IPR006058|IPR008333|IPR012675|IPR017938|IPR036010|IPR039261 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Flavoprotein pyridine nucleotide cytochrome reductase|Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain|Oxidoreductase FAD/NAD(P)-binding|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel GO:0009055|GO:0016491|GO:0051536|GO:0051537|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00111|PF00175|PF00970|PR00371|PR00410|PS00197|SSF52343|SSF54292|SSF63380 AFA_08575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735 AFA_08580 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005829|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PS00217|SSF103473 AFA_08590 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 PF01810|PIRSF006324 AFA_08595 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013229 PEGA PF08308 AFA_08600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000843|IPR010982|IPR028082 LacI-type HTH domain|Lambda repressor-like, DNA-binding domain superfamily|Periplasmic binding protein-like I GO:0003677|GO:0006355 G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|PR00036|PS00356|SM00354|SSF47413|SSF53822 AFA_08605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002781 Transmembrane protein TauE-like GO:0016021 PF01925 AFA_08610 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006680|IPR011059|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain superfamily GO:0016787|GO:0016810 G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF01979|SSF51338|SSF51556 AFA_08615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006042|IPR006043 Xanthine/uracil permease|Xanthine/uracil/vitamin C permease GO:0005215|GO:0016020|GO:0022857|GO:0055085 PF00860|PS01116 AFA_08620 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011051|IPR014710 RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|SSF51182 AFA_08630 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001107|IPR001972|IPR018080|IPR036013 Band 7 domain|Band 7/SPFH domain superfamily|Band 7/stomatin-like, conserved site|Stomatin family GO:0016020 G3DSA:3.30.479.30|PF01145|PR00721|PS01270|SM00244|SSF117892 AFA_08635 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002810 NfeD-like, C-terminal domain G3DSA:2.40.50.140|PF01957|SSF141322 AFA_08640 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:2.20.25.570|G3DSA:3.40.50.150|PF13649|SSF53335 AFA_08645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR032774 WG containing repeat PF14903 AFA_08650 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005590 Protein of unknown function DUF333 PF03891 AFA_08660 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002139|IPR011611|IPR029056 Carbohydrate kinase PfkB|Ribokinase-like|Ribokinase/fructokinase GO:0016301 G3DSA:3.40.1190.20|PF00294|PR00990|SSF53613 AFA_08665 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005590 Protein of unknown function DUF333 PF03891 AFA_08670 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002314|IPR002320|IPR004095|IPR004154|IPR012675|IPR012676|IPR012947|IPR018163|IPR036621 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)|Anticodon-binding|Anticodon-binding domain superfamily|Beta-grasp domain superfamily|TGS|TGS-like|Threonine-tRNA ligase, class IIa|Threonyl/alanyl tRNA synthetase, SAD|Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166|GO:0004812|GO:0004829|GO:0005524|GO:0005737|GO:0006418|GO:0006435|GO:0043039 G3DSA:3.10.20.30|G3DSA:3.30.54.20|G3DSA:3.30.930.10|G3DSA:3.30.980.10|G3DSA:3.40.50.800|MF_00184|PF00587|PF02824|PF03129|PF07973|PR01047|SM00863|SSF52954|SSF55186|SSF55681|SSF81271|TIGR00418 AFA_08675 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001288|IPR019813|IPR019814|IPR019815|IPR036787|IPR036788 Translation initiation factor 3|Translation initiation factor 3 (IF-3), C-terminal domain superfamily|Translation initiation factor 3 (IF-3), N-terminal domain superfamily|Translation initiation factor 3, C-terminal|Translation initiation factor 3, N-terminal|Translation initiation factor 3, conserved site GO:0003743|GO:0006413 G3DSA:3.10.20.80|G3DSA:3.30.110.10|MF_00080|PF00707|PF05198|PS00938|SSF54364|SSF55200|TIGR00168 AFA_08680 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004215|IPR004218|IPR006284|IPR013815|IPR016185 ATP-grasp fold, subdomain 1|Glutathione synthetase, prokaryotic|Pre-ATP-grasp domain superfamily|Prokaryotic glutathione synthetase, ATP-binding|Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0005524|GO:0005829|GO:0006750 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|MF_00162|PF02951|PF02955|SSF52440|SSF56059|TIGR01380 AFA_08685 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004701|IPR036662 Phosphotransferase system, mannose-type IIA component|Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 G3DSA:3.40.50.510|PF03610|SSF53062 AFA_08690 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000032|IPR001020|IPR002114|IPR035895 HPr-like superfamily|Phosphocarrier protein HPr-like|Phosphotransferase system, HPr histidine phosphorylation site|Phosphotransferase system, HPr serine phosphorylation site G3DSA:3.30.1340.10|PF00381|PR00107|PS00369|PS00589|SSF55594|TIGR01003 AFA_08695 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000121|IPR006318|IPR008279|IPR008731|IPR015813|IPR018274|IPR023151|IPR024692|IPR036618|IPR036637 PEP-utilising enzyme, C-terminal|PEP-utilising enzyme, active site|PEP-utilising enzyme, conserved site|PEP-utilising enzyme, mobile domain|Phosphohistidine domain superfamily|Phosphotransferase system, enzyme I|Phosphotransferase system, enzyme I N-terminal|Phosphotransferase system, enzyme I-like|PtsI, HPr-binding domain superfamily|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824|GO:0008965|GO:0009401|GO:0016310|GO:0016772 G3DSA:1.10.274.10|G3DSA:3.20.20.60|G3DSA:3.50.30.10|PF00391|PF02896|PF05524|PIRSF000732|PR01736|PS00370|PS00742|SSF47831|SSF51621|SSF52009|TIGR01417 AFA_08700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:1.20.120.20|SSF58113 AFA_08705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007475 Membrane fusogenic activity PF04380 AFA_08710 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_08715 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001646 Pentapeptide repeat G3DSA:2.160.20.100|PF13599|SSF141571 AFA_08720 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000523|IPR003593|IPR004482|IPR020568|IPR025158|IPR027417 AAA+ ATPase domain|Magnesium chelatase ChlI domain|Mg chelatase-related protein|Mg chelatase-related protein, C-terminal domain|P-loop containing nucleoside triphosphate hydrolase|Ribosomal protein S5 domain 2-type fold G3DSA:3.40.50.300|PF01078|PF13335|PF13541|SM00382|SSF52540|SSF54211|TIGR00368 AFA_08725 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001706|IPR018265|IPR021137|IPR037229 Ribosomal protein L35|Ribosomal protein L35 superfamily|Ribosomal protein L35, conserved site|Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.40.50.530|MF_00514|PF01632|PR00064|PS00936|SSF143034|TIGR00001 AFA_08730 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005813|IPR035566 Ribosomal protein L20|Ribosomal protein L20, C-terminal GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 G3DSA:1.10.1900.20|G3DSA:1.10.720.90|MF_00382|PD002389|PF00453|PR00062|PS00937|SSF74731|TIGR01032 AFA_08735 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002319|IPR004188|IPR004529|IPR010978|IPR022911 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm|Phenylalanine-tRNA ligase alpha chain 1, bacterial|Phenylalanine-tRNA ligase, class II, N-terminal|Phenylalanyl-tRNA synthetase|Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000049|GO:0000166|GO:0004812|GO:0004826|GO:0005524|GO:0005737|GO:0006432|GO:0043039 G3DSA:3.30.930.10|MF_00281|PF01409|PF02912|SSF46589|SSF55681|TIGR00468 AFA_08740 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002547|IPR004532|IPR005121|IPR005146|IPR005147|IPR009061|IPR012340|IPR020825|IPR036690 B3/B4 tRNA-binding domain|Ferrodoxin-fold anticodon-binding domain|Ferrodoxin-fold anticodon-binding domain superfamily|Nucleic acid-binding, OB-fold|Phenylalanine-tRNA ligase, class IIc, beta subunit|Phenylalanyl-tRNA synthetase, B3/B4|Putative DNA-binding domain superfamily|tRNA synthetase, B5-domain|tRNA-binding domain GO:0000049|GO:0000287|GO:0003723|GO:0004826|GO:0005524|GO:0005737|GO:0006432 G3DSA:2.40.50.140|G3DSA:3.30.56.10|G3DSA:3.30.70.380|G3DSA:3.30.930.10|G3DSA:3.50.40.10|MF_00283|PF01588|PF03147|PF03483|PF03484|SM00873|SM00874|SM00896|SSF46955|SSF50249|SSF54991|SSF55681|SSF56037|TIGR00472 AFA_08745 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000119|IPR005684|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain superfamily|Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 G3DSA:4.10.520.10|MF_00380|PF00216|PR01727|PS00045|SM00411|SSF47729|TIGR00987 AFA_08750 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000551|IPR009061 MerR-type HTH domain|Putative DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.1660.10|PF13411|SM00422|SSF46955 AFA_08755 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007402|IPR009078|IPR011197 Ferritin-like superfamily|Protein of unknown function DUF455|Uncharacterised conserved protein UCP012318 PF04305|PIRSF012318|SSF47240 AFA_08760 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007627|IPR013325|IPR018764 Anti-sigma K factor RskA|RNA polymerase sigma factor, region 2|RNA polymerase sigma-70 region 2 GO:0003700|GO:0005886|GO:0006352|GO:0006355|GO:0016021 G3DSA:1.10.1740.10|PF04542|PF10099|SSF88946 AFA_08765 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR011527|IPR017871|IPR027417|IPR036640 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter type 1, transmembrane domain superfamily|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016021|GO:0016887|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123 AFA_08770 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000944|IPR014290|IPR036388|IPR036390 SUF system FeS cluster assembly regulator|Transcription regulator Rrf2-type|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily G3DSA:1.10.10.10|PF02082|SSF46785|TIGR00738|TIGR02944 AFA_08775 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000825|IPR010231|IPR037284 SUF system FeS cluster assembly, SufB|SUF system FeS cluster assembly, SufBD|SUF system FeS cluster assembly, SufBD superfamily GO:0016226 PF01458|SSF101960|TIGR01980 AFA_08780 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR010230|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|FeS cluster assembly SUF system, ATPase SufC|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR01978 AFA_08785 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000825|IPR011542|IPR037284 SUF system FeS cluster assembly, SufBD|SUF system FeS cluster assembly, SufBD superfamily|SUF system FeS cluster assembly, SufD GO:0016226 PF01458|SSF101960|TIGR01981 AFA_08790 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000192|IPR010970|IPR015421|IPR015422|IPR015424 Aminotransferase class V domain|Cysteine desulfurase, SufS|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0006534|GO:0030170|GO:0031071 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00266|SSF53383|TIGR01979 AFA_08795 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 G3DSA:3.90.1010.10|PF01592|SSF82649|TIGR01994 AFA_08800 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002744|IPR017776|IPR034904 Fe-S cluster assembly domain superfamily|FeS assembly SUF system protein SufT, putative|MIP18 family-like G3DSA:3.30.300.130|PF01883|SSF117916|TIGR03406 AFA_08805 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000792|IPR016032 Signal transduction response regulator, C-terminal effector|Transcription regulator LuxR, C-terminal GO:0003677|GO:0006355 PF00196|PR00038|SM00421|SSF46894 AFA_08815 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005534 Curli production assembly/transport component CsgG GO:0030288 G3DSA:3.40.50.10610|PF03783 AFA_08820 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018893 Type VIII secretion system, CsgF PF10614 AFA_08825 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018900 Curli assembly protein CsgE PF10627 AFA_08830 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 PF13994|TIGR03940 AFA_08835 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001173|IPR023853|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases|Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA GO:0008375|GO:0043708 G3DSA:3.90.550.10|PF00535|SSF53448|TIGR03937 AFA_08840 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002509|IPR011330|IPR023854|IPR032772 Glycoside hydrolase/deacetylase, beta/alpha-barrel|NodB homology domain|Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB|Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal GO:0003824|GO:0005975|GO:0016810|GO:0043708 G3DSA:3.20.20.370|G3DSA:3.20.20.80|PF01522|PF14883|SSF88713|TIGR03938 AFA_08845 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011990|IPR023870 Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA|Tetratricopeptide-like helical domain superfamily GO:0005515|GO:1901515 G3DSA:1.25.40.10|SSF48452|TIGR03939 AFA_08860 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002059|IPR011129|IPR012156|IPR012340|IPR019844 Cold shock domain|Cold shock, CspA|Cold-shock conserved site|Cold-shock protein, DNA-binding|Nucleic acid-binding, OB-fold GO:0003676|GO:0003677|GO:0006355 G3DSA:2.40.50.140|PF00313|PIRSF002599|PR00050|PS00352|SM00357|SSF50249 AFA_08865 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007055 BON domain PF04972 AFA_08875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011652 MORN variant G3DSA:2.20.110.10|PF07661|SSF82185 AFA_08895 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000281|IPR001347|IPR009057|IPR036388 Helix-turn-helix protein RpiR|Homeobox-like domain superfamily|Sugar isomerase (SIS)|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0097367|GO:1901135 G3DSA:1.10.10.10|G3DSA:3.40.50.10490|PF01380|PF01418|SSF46689|SSF53697 AFA_08900 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001926|IPR010081|IPR036052 Diaminopropionate ammonia-lyase|Pyridoxal-phosphate dependent enzyme|Tryptophan synthase beta subunit-like PLP-dependent enzyme GO:0008838|GO:0030170 G3DSA:3.40.50.1100|PF00291|SSF53686|TIGR01747 AFA_08905 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002933|IPR010158|IPR011650|IPR036264 Amidase, carbamoylase-type|Bacterial exopeptidase dimerisation domain|Peptidase M20|Peptidase M20, dimerisation domain GO:0016787|GO:0016813 G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PIRSF001235|SSF53187|SSF55031|TIGR01879 AFA_08910 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000914|IPR030678 Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain GO:0043190|GO:0055085 G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|PF00496|PIRSF002741|SSF53850 AFA_08915 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_08920 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR025966|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Oligopeptide transport permease C-like, N-terminal domain GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|PF12911|SSF161098 AFA_08925 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540 AFA_08930 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003010|IPR036526 Carbon-nitrogen hydrolase|Carbon-nitrogen hydrolase superfamily GO:0006807 G3DSA:3.60.110.10|PF00795|SSF56317 AFA_08935 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001261|IPR002933|IPR011650|IPR036264 ArgE/DapE/ACY1/CPG2/YscS, conserved site|Bacterial exopeptidase dimerisation domain|Peptidase M20|Peptidase M20, dimerisation domain GO:0006508|GO:0008237|GO:0016787 G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PS00758|SSF53187|SSF55031 AFA_08940 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009197|IPR010799|IPR015995 Microcystin LR degradation protein MlrC|Microcystin LR degradation protein MlrC, C-terminal|Microcystin LR degradation protein MlrC, N-terminal PF07171|PF07364|PIRSF012702 AFA_08960 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014956|IPR036086 ParB/Sulfiredoxin superfamily|Putative ParB-like nuclease G3DSA:3.90.1530.10|PF08857|SSF110849 AFA_08975 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935 AFA_08985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011032|IPR013149|IPR013154|IPR020843|IPR036291 Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|SM00829|SSF50129|SSF51735 AFA_08990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009057|IPR018060|IPR018062|IPR032783 AraC-type transcription regulator, ligand-binding domain|DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox-like domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12833|PF12852|PS00041|SM00342|SSF46689 AFA_08995 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006076|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905 AFA_09005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001387|IPR010982|IPR011051|IPR013096|IPR014710 Cro/C1-type helix-turn-helix domain|Cupin 2, conserved barrel|Lambda repressor-like, DNA-binding domain superfamily|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold GO:0003677|GO:0043565 G3DSA:1.10.260.40|G3DSA:2.60.120.10|PF07883|PF12844|SM00530|SSF47413|SSF51182 AFA_09010 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005532|IPR016187 C-type lectin fold|Sulfatase-modifying factor enzyme G3DSA:3.90.1580.10|PF03781|SSF56436 AFA_09015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily G3DSA:2.60.40.1240 AFA_09025 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 PF02386 AFA_09030 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003148|IPR006037|IPR036291|IPR036721 NAD(P)-binding domain superfamily|Regulator of K+ conductance, C-terminal|Regulator of K+ conductance, C-terminal domain superfamily|Regulator of K+ conductance, N-terminal GO:0006813|GO:0008324 G3DSA:3.30.70.1450|G3DSA:3.40.50.720|PF02080|PF02254|SSF116726|SSF51735 AFA_09035 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001155|IPR013785 Aldolase-type TIM barrel|NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0003824|GO:0010181|GO:0016491|GO:0055114 G3DSA:3.20.20.70|PF00724|SSF51395 AFA_09040 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003736|IPR006683|IPR029069 HotDog domain superfamily|Phenylacetic acid degradation-related domain|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637|TIGR00369 AFA_09045 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003789|IPR019004|IPR023168 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like|Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal|Uncharacterised protein YqeY/AIM41 GO:0016884 G3DSA:1.10.10.410|G3DSA:1.10.1510.10|PF09424|SSF89095 AFA_09050 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003141|IPR004013|IPR004805|IPR011708|IPR016195|IPR023073|IPR029460 Bacterial DNA polymerase III, alpha subunit|DNA polymerase III, alpha subunit|DNA polymerase, error-prone|DNA polymerase, helix-hairpin-helix motif|PHP domain|Polymerase/histidinol phosphatase, N-terminal|Polymerase/histidinol phosphatase-like GO:0003824|GO:0003887|GO:0006260|GO:0008408 G3DSA:3.20.20.140|MF_01902|PF02811|PF07733|PF14579|SM00481|SSF89550|TIGR00594 AFA_09055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic SSF56672 AFA_09060 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017166|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Uncharacterised conserved protein UCP037290 G3DSA:3.40.50.300|PIRSF037290|SSF52540 AFA_09065 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005636 DTW PF03942|SM01144 AFA_09075 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008551 Transport and Golgi organisation protein 2 PF05742 AFA_09080 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 G3DSA:3.40.630.10|PF04952|SSF53187 AFA_09085 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_09090 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 AFA_09095 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001967|IPR012338|IPR018044 Beta-lactamase/transpeptidase-like|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 G3DSA:3.40.710.10|PF00768|PR00725|SSF56601 AFA_09100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009420 Flagellar protein FlhE PF06366 AFA_09105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000540|IPR002898 Flagellar motor protein MotA, conserved site|MotA/TolQ/ExbB proton channel PF01618|PS01307 AFA_09110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006665|IPR025713|IPR036737 Motility protein B, N-terminal domain|OmpA-like domain|OmpA-like domain superfamily G3DSA:3.30.1330.60|PF00691|PF13677|SSF103088 AFA_09115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001734|IPR038377 Sodium/glucose symporter superfamily|Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1730.10|PF00474 AFA_09120 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00081|SSF51735 AFA_09125 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011251|IPR016215|IPR036661 Luciferase-like domain|Luciferase-like domain superfamily|Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497|GO:0016705|GO:0055114 G3DSA:3.20.20.30|PF00296|PIRSF000337|SSF51679|TIGR03860 AFA_09130 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SSF51735 AFA_09135 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001783|IPR017938|IPR023366|IPR026017 ATP synthase subunit alpha, N-terminal domain-like superfamily|Lumazine-binding domain|Lumazine-binding protein|Riboflavin synthase-like beta-barrel G3DSA:2.40.30.20|PF00677|PIRSF000498|SSF63380|TIGR00187 AFA_09140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR027417|IPR038727 NadR/Ttd14, AAA domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13521|SSF52540 AFA_09145 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000362|IPR008948|IPR018951|IPR020557|IPR022761|IPR024083 Fumarase C, C-terminal|Fumarase/histidase, N-terminal|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like GO:0003824|GO:0006099|GO:0016829 G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|PF00206|PF10415|PR00145|PR00149|PS00163|SSF48557 AFA_09150 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001991|IPR036458 Sodium:dicarboxylate symporter|Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 G3DSA:1.10.3860.10|PF00375|PR00173|SSF118215 AFA_09155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR003661|IPR004358|IPR017055|IPR029151|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Periplasmic sensor-like domain superfamily|Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator)|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF02518|PIRSF036431|PR00344|SM00387|SM00388|SSF103190|SSF47384|SSF55874 AFA_09160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR002078|IPR002197|IPR003593|IPR009057|IPR011006|IPR025662|IPR025944|IPR027417 AAA+ ATPase domain|CheY-like superfamily|DNA binding HTH domain, Fis-type|Homeobox-like domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, conserved site|Signal transduction response regulator, receiver domain GO:0000160|GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.40.50.2300|G3DSA:3.40.50.300|PF00072|PF00158|PF02954|PR01590|PS00675|PS00688|SM00382|SM00448|SSF46689|SSF52172|SSF52540 AFA_09165 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 AFA_09170 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003953|IPR012831|IPR027477|IPR036188 FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain superfamily|Precorrin 3B synthase CobZ|Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily G3DSA:3.50.50.60|G3DSA:3.90.700.10|PF00890|SSF51905|SSF56425|TIGR02485 AFA_09175 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012830|IPR036197 Citrate utilization protein B|NarG-like superfamily SSF103501|SSF54862|TIGR02484 AFA_09180 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_09185 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006656|IPR006657|IPR006963|IPR009010 Aspartate decarboxylase-like domain superfamily|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0043546|GO:0055114 G3DSA:2.20.25.90|G3DSA:2.40.40.20|G3DSA:3.40.50.740|PF00384|PF01568|SM00926|SSF50692|SSF53706 AFA_09190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005614 NrfD family PF03916 AFA_09195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain G3DSA:3.30.70.20|PF13247|PS00198|SSF54862 AFA_09200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR010105|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily|TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935|TIGR01783 AFA_09205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain PF09723|SM00834|TIGR02605 AFA_09210 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004304 Acetamidase/Formamidase GO:0016811 G3DSA:2.60.120.580|PF03069|SSF141130 AFA_09215 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006680|IPR011059|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain superfamily GO:0016787|GO:0016810 G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF01979|SSF51338|SSF51556 AFA_09220 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006042|IPR006043|IPR017588 Uric acid permease UacT-like|Xanthine/uracil permease|Xanthine/uracil/vitamin C permease GO:0005215|GO:0016020|GO:0016021|GO:0022857|GO:0055085 PF00860|PS01116|TIGR00801|TIGR03173 AFA_09225 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002068|IPR008978 Alpha crystallin/Hsp20 domain|HSP20-like chaperone G3DSA:2.60.40.790|PF00011|SSF49764 AFA_09230 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002933|IPR011650|IPR017439|IPR036264 Amidohydrolase|Bacterial exopeptidase dimerisation domain|Peptidase M20|Peptidase M20, dimerisation domain GO:0016787 G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PIRSF005962|SSF53187|SSF55031|TIGR01891 AFA_09235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003313|IPR009057|IPR011051|IPR014710|IPR018060|IPR018062 AraC-type arabinose-binding/dimerisation domain|DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox-like domain superfamily|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:2.60.120.10|PF02311|PF12833|PS00041|SM00342|SSF46689|SSF51182 AFA_09240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1720.10|PF07690|SSF103473 AFA_09245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_09250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013094|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-3 GO:0016787 G3DSA:3.40.50.1820|PF07859|SSF53474 AFA_09255 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004360|IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain G3DSA:3.10.180.10|PF00903|SSF54593 AFA_09260 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002938|IPR036188 FAD-binding domain|FAD/NAD(P)-binding domain superfamily GO:0071949 G3DSA:3.30.9.50|G3DSA:3.50.50.60|PF01494|PR00420|SSF51905 AFA_09265 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR036388|IPR036390 MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01047|PR00598|SM00347|SSF46785 AFA_09270 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000086|IPR015376|IPR015797|IPR020084 NUDIX hydrolase domain|NUDIX hydrolase, conserved site|NUDIX hydrolase-like domain superfamily|Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 G3DSA:3.90.79.10|G3DSA:3.90.79.20|PF00293|PF09297|PS00893|SSF55811 AFA_09275 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005229|IPR013527|IPR013551 Conserved hypothetical protein CHP00255|Domain of unknown function DUF1732|YicC-like, N-terminal PF03755|PF08340|TIGR00255 AFA_09280 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004843|IPR014577|IPR029052 Calcineurin-like phosphoesterase domain, ApaH type|Metallo-dependent phosphatase-like|Uncharacterised conserved protein UCP033093, metallophosphoesterase-type GO:0016787 G3DSA:3.60.21.10|PF00149|PIRSF033093|SSF56300 AFA_09285 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR027417|IPR038734 P-loop containing nucleoside triphosphate hydrolase|Uncharacterized protein YhaN, AAA domain G3DSA:3.40.50.300|PF13514|SSF52540 AFA_09290 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001247|IPR002381|IPR015847|IPR018336|IPR020568|IPR027408|IPR036345 Exoribonuclease, PH domain 2 superfamily|Exoribonuclease, phosphorolytic domain 1|Exoribonuclease, phosphorolytic domain 2|PNPase/RNase PH domain superfamily|Ribonuclease PH, bacterial-type|Ribonuclease PH, conserved site|Ribosomal protein S5 domain 2-type fold GO:0000049|GO:0008033|GO:0009022 G3DSA:3.30.230.70|MF_00564|PF01138|PF03725|PS01277|SSF54211|SSF55666|TIGR01966 AFA_09295 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002637|IPR020922|IPR029001 Ham1-like protein|Inosine triphosphate pyrophosphatase-like|dITP/XTP pyrophosphatase GO:0009143|GO:0017111|GO:0047429 G3DSA:3.90.950.10|MF_01405|PF01725|SSF52972|TIGR00042 AFA_09300 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004559|IPR006638|IPR007197|IPR010723|IPR023404 Elp3/MiaB/NifB|HemN, C-terminal|Oxygen-independent coproporphyrinogen III oxidase-like|Radical SAM|Radical SAM, alpha/beta horseshoe GO:0003824|GO:0004109|GO:0005737|GO:0006779|GO:0051536|GO:0055114 G3DSA:3.80.30.20|PF04055|PF06969|SM00729|SSF102114|TIGR00539 AFA_09305 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001637|IPR004809|IPR008146|IPR008147|IPR014746|IPR027302|IPR027303|IPR036651 Glutamine synthetase class-I, adenylation site|Glutamine synthetase type I|Glutamine synthetase, N-terminal conserved site|Glutamine synthetase, N-terminal domain superfamily|Glutamine synthetase, beta-Grasp domain|Glutamine synthetase, catalytic domain|Glutamine synthetase, glycine-rich site|Glutamine synthetase/guanido kinase, catalytic domain GO:0003824|GO:0004356|GO:0005737|GO:0006542|GO:0006807|GO:0009399 G3DSA:3.10.20.70|G3DSA:3.30.590.10|PF00120|PF03951|PS00180|PS00181|PS00182|SM01230|SSF54368|SSF55931|TIGR00653 AFA_09310 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF13673|SSF55729 AFA_09315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 AFA_09320 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_09325 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002109|IPR009908|IPR036249 Glutaredoxin|Methylamine utilisation protein, MauE|Thioredoxin-like superfamily GO:0009055|GO:0015035|GO:0016021|GO:0030416|GO:0045454 G3DSA:3.40.30.10|PF00462|PF07291|SSF52833 AFA_09330 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_09335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_09340 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR026045 Ferric binding protein G3DSA:3.40.190.10|PF13343|PIRSF002825|SSF53850 AFA_09345 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001221|IPR001433|IPR001709|IPR008333|IPR017938|IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Flavoprotein pyridine nucleotide cytochrome reductase|Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain|Oxidoreductase FAD/NAD(P)-binding|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.40.50.80|PF00175|PF00970|PR00371|PR00410|SSF52343|SSF63380 AFA_09350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006056|IPR006175|IPR035959 RidA family|RutC-like superfamily|YjgF/YER057c/UK114 family G3DSA:3.30.1330.40|PF01042|SSF55298|TIGR00004 AFA_09355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001650|IPR004609|IPR011545|IPR012340|IPR014001|IPR027417|IPR033454 ATP-dependent DNA helicase RecG|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|Nucleic acid-binding, OB-fold|P-loop containing nucleoside triphosphate hydrolase|RecG, wedge domain GO:0003676|GO:0004003|GO:0005524|GO:0006281|GO:0006310 G3DSA:2.40.50.140|G3DSA:3.40.50.300|PF00270|PF00271|PF17191|SM00487|SM00490|SSF50249|SSF52540|TIGR00643 AFA_09360 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_09365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002177|IPR008331|IPR009078|IPR012347|IPR023188 DNA-binding protein Dps|DNA-binding protein Dps, conserved site|Ferritin-like|Ferritin-like superfamily|Ferritin/DPS protein domain GO:0006879|GO:0008199|GO:0016722|GO:0055114 G3DSA:1.20.1260.10|PF00210|PIRSF005900|PR01346|PS00819|SSF47240 AFA_09370 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000709|IPR028081|IPR028082 Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I GO:0006865 G3DSA:3.40.50.2300|PF13458|PR00337|SSF53822 AFA_09375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR008995|IPR013611|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 2 GO:0005524|GO:0016887|GO:0022857|GO:0043190|GO:0055085 G3DSA:2.40.50.100|G3DSA:2.40.50.140|G3DSA:3.40.50.300|PF00005|PF08402|PS00211|SM00382|SSF50331|SSF52540 AFA_09380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_09385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_09390 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006059|IPR006061 Bacterial extracellular solute-binding protein|Solute-binding family 1, conserved site GO:0055085 G3DSA:3.40.190.10|PF13416|PS01037|SSF53850 AFA_09395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000304|IPR008927|IPR028939|IPR029036|IPR036291 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily|Pyrroline-5-carboxylate reductase|Pyrroline-5-carboxylate reductase, catalytic, N-terminal|Pyrroline-5-carboxylate reductase, dimerisation domain GO:0004735|GO:0006561|GO:0055114 G3DSA:1.10.3730.10|G3DSA:3.40.50.720|MF_01925|PF03807|PF14748|PIRSF000193|PS00521|SSF48179|SSF51735|TIGR00112 AFA_09400 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000709|IPR028081|IPR028082 Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I GO:0006865 G3DSA:3.40.50.2300|PF13458|PR00337|SSF53822 AFA_09405 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_09410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851|IPR021807 ABC transporter, permease|High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal GO:0016020|GO:0022857|GO:0055085 PF02653|PF11862 AFA_09415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|SM00382|SSF52540 AFA_09420 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030660 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|High-affinity branched-chain amino acid transport ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015658|GO:0015803|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039137|PS00211|SM00382|SSF52540 AFA_09430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004045|IPR004046|IPR036249|IPR036282 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF02798|PF14497|SSF47616|SSF52833 AFA_09435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001375|IPR029058 Alpha/Beta hydrolase fold|Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 G3DSA:2.130.10.120|G3DSA:3.40.50.1820|PF00326|SSF53474|SSF82171 AFA_09440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006139|IPR006140|IPR029753|IPR036291 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain superfamily GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF00389|PF02826|PS00670|SSF51735|SSF52283 AFA_09445 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735 AFA_09450 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR020828|IPR020829|IPR020830|IPR020831|IPR036291 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain|Glyceraldehyde 3-phosphate dehydrogenase, active site|Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain|Glyceraldehyde/Erythrose phosphate dehydrogenase family|NAD(P)-binding domain superfamily GO:0016620|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF00044|PF02800|PIRSF000149|PR00078|PS00071|SM00846|SSF51735|SSF55347 AFA_09455 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000362|IPR005677|IPR008948|IPR018951|IPR020557|IPR022761|IPR024083 Fumarase C, C-terminal|Fumarase/histidase, N-terminal|Fumarate hydratase, class II|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like GO:0003824|GO:0004333|GO:0006099|GO:0006106|GO:0016829|GO:0045239 G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|MF_00743|PF00206|PF10415|PR00145|PR00149|PS00163|SSF48557|TIGR00979 AFA_09460 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011041|IPR011042|IPR012938 Glucose/Sorbosone dehydrogenase|Six-bladed beta-propeller, TolB-like|Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 G3DSA:2.120.10.30|PF07995|SSF50952 AFA_09465 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013216|IPR029063 Methyltransferase type 11|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168 G3DSA:3.40.50.150|PF08241|SSF53335 AFA_09470 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006015|IPR006016|IPR014729 Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA G3DSA:3.40.50.620|PF00582|PR01438|SSF52402 AFA_09475 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002324|IPR009056|IPR036909 Cytochrome c, class ID|Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0005506|GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF13442|PR00606|SSF46626 AFA_09480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_09485 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002110|IPR020683|IPR036770 Ankyrin repeat|Ankyrin repeat-containing domain|Ankyrin repeat-containing domain superfamily GO:0005515 G3DSA:1.25.40.20|PF12796|PR01415|SM00248|SSF48403 AFA_09490 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 AFA_09495 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025421 Protein of unknown function DUF4148 PF13663 AFA_09500 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001757|IPR006121|IPR006122|IPR008250|IPR017969|IPR018303|IPR023214|IPR023298|IPR023299|IPR027256|IPR036163|IPR036412 HAD superfamily|HAD-like superfamily|Heavy metal-associated domain superfamily|Heavy metal-associated domain, HMA|Heavy metal-associated domain, copper ion-binding|Heavy-metal-associated, conserved site|P-type ATPase|P-type ATPase, A domain superfamily|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB|P-type ATPase, transmembrane domain superfamily GO:0000166|GO:0005507|GO:0006812|GO:0016021|GO:0019829|GO:0030001|GO:0046872 G3DSA:2.70.150.20|G3DSA:3.30.70.100|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00403|PF00702|PR00119|PR00941|PS00154|PS01047|SSF55008|SSF56784|SSF81653|SSF81665|TIGR00003|TIGR01494|TIGR01511|TIGR01525 AFA_09505 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR019884 YtoQ family protein PF11071|TIGR03646 AFA_09510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002104|IPR010998|IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|SSF56349 AFA_09515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021104 KfrA, N-terminal DNA-binding domain PF11740 AFA_09520 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002355|IPR008972|IPR011706|IPR011707 Cupredoxin|Multicopper oxidase, copper-binding site|Multicopper oxidase, type 2|Multicopper oxidase, type 3 GO:0005507|GO:0016491|GO:0055114 G3DSA:2.60.40.420|PF07731|PF07732|PS00080|SSF49503 AFA_09525 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003135|IPR005862|IPR011054|IPR013815|IPR016185 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type|ATP-grasp fold, subdomain 1|Formate-dependent phosphoribosylglycinamide formyltransferase|Pre-ATP-grasp domain superfamily|Rudiment single hybrid motif GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|MF_01643|PF02222|SSF51246|SSF52440|SSF56059|TIGR01142 AFA_09535 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR022488|IPR022489|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Polyphosphate kinase-2-related|Polyphosphate:AMP phosphotransferase GO:0006797|GO:0043751 G3DSA:3.40.50.300|PF03976|SSF52540|TIGR03708 AFA_09540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011093|IPR011119|IPR022391|IPR036390 Integrating conjugative element relaxase, PFGI-1 class|Putative conjugal transfer nickase/helicase TraI, C-terminal|Uncharacterised domain, helicase/relaxase, putative|Winged helix DNA-binding domain superfamily G3DSA:1.10.3210.40|G3DSA:2.40.10.200|PF07514|PF07515|SSF46785|TIGR03760 AFA_09545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR022260 Integrating conjugative element protein PilL, PFGI-1 TIGR03748 AFA_09560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008258|IPR023346 Lysozyme-like domain superfamily|Transglycosylase SLT domain 1 PF01464|SSF53955 AFA_09565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021300 Integrating conjugative element protein, PFL4695 PF11072|TIGR03765 AFA_09570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR022458|IPR022503|IPR027417|IPR032689 Conjugative coupling factor TraG/TraD|Conjugative coupling factor TraG/TraD, PFGI-1|P-loop containing nucleoside triphosphate hydrolase|TraD/TraG, TraM recognition site G3DSA:3.40.50.300|PF12696|SSF52540|TIGR03743|TIGR03754 AFA_09575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR022266 Integrating conjugative element protein, PFL4697-type PF14348|TIGR03747 AFA_09580 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR019110 Uncharacterised protein family, RAQPRD PF09686 AFA_09585 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021676 Protein of unknown function DUF3262 PF11660|TIGR03758 AFA_09590 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021356 Integrating conjugative element protein PFL4702 PF11190 AFA_09595 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021877 Protein of unknown function DUF3487 PF11990|TIGR03750 AFA_09600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021548 Protein of unknown function DUF2895 PF11444|TIGR03746 AFA_09605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021844 Integrating conjugative element protein, PFL4704 PF11920|TIGR03749 AFA_09610 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021207 Integrating conjugative element protein, PFL4705 TIGR03752 AFA_09615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR022262 Lipoprotein, putative TIGR03751 AFA_09620 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR022303|IPR025955|IPR027417 Conjugative transfer ATPase|P-loop containing nucleoside triphosphate hydrolase|Type-IV secretion system protein TraC/Conjugative transfer ATPase G3DSA:3.40.50.300|PF11130|SSF52540|TIGR03744 AFA_09625 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011090 Integrating conjugative element protein, PFL4709 PF07511|TIGR03757 AFA_09630 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009649 TraU PF06834 AFA_09635 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021204 Integrating conjugative element protein, PFL4711 TIGR03755 AFA_09645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012931 TraG-like, N-terminal PF07916 AFA_09660 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002104|IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.443.10|PF00589|SSF56349 AFA_09670 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000719|IPR008271|IPR011009 Protein kinase domain|Protein kinase-like domain superfamily|Serine/threonine-protein kinase, active site GO:0004672|GO:0005524|GO:0006468 G3DSA:1.10.510.10|G3DSA:3.30.200.20|PF00069|PS00108|SM00220|SSF56112 AFA_09680 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003477|IPR011067 Plasmid maintenance toxin/Cell growth inhibitor|mRNA interferase PemK-like GO:0003677 G3DSA:2.30.30.110|PF02452|SSF50118 AFA_09685 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021558 Protein of unknown function DUF3018 PF11455 AFA_09695 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006640 SprT-like PF10263 AFA_09700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005182 Domain of unknown function DUF304 PF03703 AFA_09705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009094|IPR012336|IPR018950|IPR036249 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily|Disulphide bond isomerase, DsbC/G, N-terminal|Thioredoxin-like fold|Thioredoxin-like superfamily GO:0042597 G3DSA:3.10.450.70|G3DSA:3.40.30.10|PF10411|PF13098|SSF52833|SSF54423 AFA_09720 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001801|IPR027444|IPR037150 Histone-like protein H-NS|Histone-like protein H-NS, C-terminal domain|Histone-like protein H-NS, C-terminal domain superfamily GO:0003677|GO:0005622|GO:0006355 G3DSA:4.10.430.10|PF00816|SM00528|SSF81273 AFA_09725 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR027417|IPR038726 P-loop containing nucleoside triphosphate hydrolase|PD-(D/E)XK endonuclease-like domain, AddAB-type PF12705|SSF52540 AFA_09730 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014017|IPR027417|IPR034739 P-loop containing nucleoside triphosphate hydrolase|UvrD-like DNA helicase, C-terminal|UvrD/AddA helicase, N-terminal GO:0005524|GO:0016787 G3DSA:3.40.50.300|PF00580|PF13361|SSF52540 AFA_09740 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:3.30.870.10 AFA_09745 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001650|IPR014001|IPR027417 Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF00271|SM00487|SSF52540 AFA_09750 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001650|IPR014001|IPR027417|IPR038718 Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|SNF2-like, N-terminal domain superfamily G3DSA:3.40.50.10810|G3DSA:3.40.50.300|PF00271|SM00487|SSF52540 AFA_09765 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001405|IPR020891|IPR025657 RadC-like JAB domain|Uncharacterised protein family UPF0758|Uncharacterised protein family UPF0758, conserved site G3DSA:3.40.140.10|PF04002|PS01302|SSF102712|TIGR00608 AFA_09770 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PR00507|SSF53335 AFA_09795 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021693 Protein of unknown function DUF3275 PF11679 AFA_09800 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021960 Protein of unknown function DUF3577 PF12101 AFA_09805 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 PF01527 AFA_09810 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012337 Ribonuclease H-like superfamily SSF53098 AFA_09815 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001584 Integrase, catalytic core GO:0015074 PF13683 AFA_09820 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001387|IPR010982|IPR022812|IPR027417 Cro/C1-type helix-turn-helix domain|Dynamin superfamily|Lambda repressor-like, DNA-binding domain superfamily|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0043565 G3DSA:1.10.260.40|G3DSA:3.40.50.300|PF00350|PF01381|SM00530|SSF47413|SSF52540 AFA_09830 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001650|IPR011545|IPR014001|IPR027417 DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0003676|GO:0005524 G3DSA:3.40.50.300|PF00270|PF00271|SM00487|SM00490|SSF52540 AFA_09835 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic PD144061 AFA_09845 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000424|IPR012340 Nucleic acid-binding, OB-fold|Primosome PriB/single-strand DNA-binding GO:0003697 G3DSA:2.40.50.140|PF00436|PIRSF002070|SSF50249 AFA_09855 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014996 Integrating conjugative element protein, PFL4669 PF08900|TIGR03761 AFA_09875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021364 Protein of unknown function DUF2857 PF11198 AFA_09880 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR022304|IPR036086 Integrating conjugative element, PFGI-1, ParB|ParB/Sulfiredoxin superfamily SSF110849|TIGR03764 AFA_09885 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025669|IPR027417 AAA domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13614|SSF52540 AFA_09890 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006664|IPR006665|IPR032608|IPR036737 OmpA-like domain|OmpA-like domain superfamily|Outer membrane protein, bacterial|Protein of unknown function DUF4892 GO:0009279|GO:0016021 G3DSA:3.30.1330.60|PF00691|PF16234|PR01021|SSF103088 AFA_09900 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005158|IPR011990|IPR027417|IPR036388 Bacterial transcriptional activator domain|P-loop containing nucleoside triphosphate hydrolase|Tetratricopeptide-like helical domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0005515 G3DSA:1.10.10.10|G3DSA:1.25.40.10|PF03704|PF13191|SM01043|SSF48452|SSF52540 AFA_09905 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007730|IPR025743|IPR036680 ImcF-related, N-terminal domain|Sporulation-like domain|Sporulation-like domain superfamily GO:0042834 PF05036|PF14331|SSF110997 AFA_09910 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017732|IPR038522 Type IV / VI secretion system, DotU|Type IV / VI secretion system, DotU superfamily G3DSA:1.25.40.590|PF09850|TIGR03349 AFA_09915 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010263 Type VI secretion protein, VC_A0114 PF05936|TIGR03353 AFA_09920 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017734|IPR038706 Type VI secretion protein SciN-like superfamily|Type VI secretion system, lipoprotein SciN G3DSA:2.60.40.4150|PF12790|TIGR03352 AFA_09925 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025425 Domain of unknown function DUF4150 PF13665 AFA_09930 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021927 Protein of unknown function DUF3540 PF12059 AFA_09935 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001646 Pentapeptide repeat G3DSA:2.160.20.100|G3DSA:2.160.20.80|PF00805|PF13599|SSF141571 AFA_09940 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001646|IPR018683 Domain of unknown function DUF2169|Pentapeptide repeat G3DSA:2.160.20.100|G3DSA:2.160.20.80|PF00805|PF09937|PF13599|SSF141571 AFA_09945 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006533|IPR017847|IPR037026 Type VI secretion system, RhsGE-associated Vgr family subset|Type VI secretion system, RhsGE-associated Vgr protein|Vgr protein, OB-fold domain superfamily G3DSA:2.30.110.50|G3DSA:2.40.50.230|G3DSA:3.30.1920.30|G3DSA:3.55.50.10|PF05954|SSF69255|SSF69279|TIGR01646|TIGR03361 AFA_09950 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001270|IPR003593|IPR003959|IPR004176|IPR017729|IPR018368|IPR019489|IPR027417|IPR028299|IPR036628 AAA+ ATPase domain|ATPase, AAA-type, core|Clp ATPase, C-terminal|Clp, N-terminal|Clp, N-terminal domain superfamily|ClpA/B family|ClpA/B, conserved site 1|ClpA/B, conserved site 2|P-loop containing nucleoside triphosphate hydrolase|Type VI secretion system, ATPase ClpV1 GO:0005524|GO:0019538 G3DSA:1.10.1780.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00004|PF02861|PF07724|PF10431|PR00300|PS00870|PS00871|SM00382|SM01086|SSF52540|SSF81923|TIGR03345 AFA_09955 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010732 Type VI secretion, TssG-like PF06996|TIGR03347 AFA_09960 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010272 Type VI secretion system, TssF-like PF05947|PIRSF028304|TIGR03359 AFA_09965 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007048|IPR017737 GpW/Gp25/anti-adapter protein IraD|Type VI secretion system, lysozyme-related protein G3DSA:3.10.450.40|PF04965|SSF160719|TIGR03357 AFA_09970 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008514|IPR036624 Hcp1-like superfamily|Type VI secretion system effector, Hcp G3DSA:2.30.110.20|PF05638|SSF141452|TIGR03344 AFA_09975 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath PF05943|TIGR03355 AFA_09980 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 PF05591|PIRSF028301|TIGR03358 AFA_09985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010657|IPR017739 ImpA, N-terminal|Type VI secretion system-associated, VCA0119 PF06812|PF16989 AFA_09990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735 AFA_09995 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007553 Domain of unknown function DUF523 PF04463 AFA_10005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009413 Hemolysin, aegerolysin type GO:0019836 G3DSA:2.60.270.50|PF06355|PIRSF007951 AFA_10010 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF00583|SSF55729 AFA_10015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002104|IPR010998|IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|SSF56349 AFA_10020 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001452|IPR014593|IPR036028 SH3 domain|SH3-like domain superfamily|Uncharacterised conserved protein UCP034961, SH3-2 GO:0005515 PF07653|PIRSF034961|SSF50044 AFA_10030 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011577|IPR016174 Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane GO:0009055|GO:0016020|GO:0016021|GO:0022904 G3DSA:1.20.950.20|PF01292|SSF81342 AFA_10035 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007372|IPR036761 Lipid/polyisoprenoid-binding, YceI-like|Lipid/polyisoprenoid-binding, YceI-like superfamily G3DSA:2.40.128.110|PF04264|SM00867|SSF101874 AFA_10040 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007372|IPR036761 Lipid/polyisoprenoid-binding, YceI-like|Lipid/polyisoprenoid-binding, YceI-like superfamily G3DSA:2.40.128.110|PF04264|SM00867|SSF101874 AFA_10045 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006659|IPR006660|IPR036249 Arsenate reductase|Arsenate reductase-like|Thioredoxin-like superfamily GO:0008794|GO:0055114 G3DSA:3.40.30.10|PF03960|SSF52833|TIGR00014 AFA_10050 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004045|IPR004046|IPR036249|IPR036282 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF02798|SSF47616|SSF52833 AFA_10055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021729|IPR037126 Domain of unknown function DUF3298|PdaC/RsiV-like superfamily G3DSA:3.30.565.40|G3DSA:3.90.640.20|PF11738 AFA_10060 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005025|IPR021250|IPR029039 Flavoprotein-like superfamily|NADPH-dependent FMN reductase-like|Protein of unknown function DUF2789 GO:0016491 G3DSA:1.10.10.1130|G3DSA:3.40.50.360|PF03358|PF10982|SSF52218 AFA_10065 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002110|IPR020683|IPR036770 Ankyrin repeat|Ankyrin repeat-containing domain|Ankyrin repeat-containing domain superfamily GO:0005515 G3DSA:1.25.40.20|PF12796|PR01415|SM00248|SSF48403 AFA_10070 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001130|IPR015991|IPR018228|IPR032466 Deoxyribonuclease, TatD-related, conserved site|Metal-dependent hydrolase|TatD family|Uncharacterised hydrolase TatD-type GO:0004536|GO:0016788|GO:0016888 G3DSA:3.20.20.140|PF01026|PIRSF005902|PS01090|PS01091|PS01137|SSF51556|TIGR00010 AFA_10075 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004622|IPR027417 DNA polymerase III, delta prime subunit|P-loop containing nucleoside triphosphate hydrolase GO:0003887|GO:0006260|GO:0008408 G3DSA:3.40.50.300|PF13177|SSF52540|TIGR00678 AFA_10080 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|SSF52540 AFA_10085 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003770 Endolytic murein transglycosylase G3DSA:1.10.8.1150|G3DSA:3.30.160.60|MF_02065|PF02618|TIGR00247 AFA_10090 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006222|IPR017703 Aminomethyltransferase, folate-binding domain|YgfZ/GcvT conserved site G3DSA:2.40.30.160|G3DSA:3.30.70.1400|PF01571|SSF103025|TIGR03317 AFA_10095 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002204|IPR006115|IPR008927|IPR011548|IPR013328|IPR015815|IPR029154|IPR036291 3-hydroxyisobutyrate dehydrogenase|3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|3-hydroxyisobutyrate dehydrogenase-related, conserved site|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0008442|GO:0016491|GO:0050661|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|PS00895|SSF48179|SSF51735|TIGR01692 AFA_10100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029045|IPR032259 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 G3DSA:3.90.226.10|PF16113|SSF52096 AFA_10105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00072|PS00073|SSF47203|SSF56645 AFA_10110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001374|IPR005346|IPR016155|IPR037021 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp|R3H domain|RnfH protein|RnfH superfamily GO:0003676 G3DSA:3.10.20.280|MF_00460|PF01424|PF03658|SSF54285 AFA_10115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005031|IPR023393 Coenzyme Q-binding protein COQ10, START domain|START-like domain superfamily G3DSA:3.30.530.20|PF03364|SSF55961 AFA_10120 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000037|IPR020081|IPR023620 Small protein B|SsrA-binding protein|SsrA-binding protein, conserved site GO:0003723 G3DSA:2.40.280.10|MF_00023|PD004488|PF01668|PS01317|SSF74982|TIGR00086 AFA_10125 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023753|IPR036188 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.50.50.100|PF07992|PR00368|PR00411|SSF51905 AFA_10135 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000121|IPR002192|IPR006319|IPR008279|IPR013815|IPR015813|IPR018274|IPR023151|IPR036637 ATP-grasp fold, subdomain 1|PEP-utilising enzyme, C-terminal|PEP-utilising enzyme, active site|PEP-utilising enzyme, conserved site|PEP-utilising enzyme, mobile domain|Phosphoenolpyruvate synthase|Phosphohistidine domain superfamily|Pyruvate phosphate dikinase, PEP/pyruvate-binding|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824|GO:0005524|GO:0006090|GO:0008986|GO:0016301|GO:0016310|GO:0016772 G3DSA:3.20.20.60|G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.50.30.10|PF00391|PF01326|PF02896|PIRSF000854|PS00370|PS00742|SSF51621|SSF52009|SSF56059|TIGR01418 AFA_10140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005177|IPR026530 Bifunctional kinase-pyrophosphorylase|Phosphoenolpyruvate synthase regulatory protein GO:0005524|GO:0016772 MF_01062|PF03618 AFA_10145 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023631|IPR036928 Amidase signature (AS) superfamily|Amidase signature domain G3DSA:3.90.1300.10|PF01425|SSF75304 AFA_10150 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001537|IPR029026|IPR029028|IPR029064 50S ribosomal protein L30e-like|Alpha/beta knot methyltransferases|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 G3DSA:3.40.1280.10|PF00588|SSF55315|SSF75217 AFA_10155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012337|IPR022898|IPR024567|IPR036397 Ribonuclease H superfamily|Ribonuclease H-like superfamily|Ribonuclease HII|Ribonuclease HII/HIII domain GO:0003676|GO:0004523 G3DSA:3.30.420.10|MF_00052_B|PF01351|SSF53098 AFA_10160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 MF_00392|PF02684|SSF53756|TIGR00215 AFA_10165 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001451|IPR010137|IPR011004|IPR029098|IPR037157 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase|Hexapeptide repeat|Trimeric LpxA-like superfamily|UDP N-acetylglucosamine O-acyltransferase, C-terminal|UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily GO:0008610|GO:0008780 G3DSA:1.20.1180.10|G3DSA:2.160.10.10|MF_00387|PF00132|PF13720|PIRSF000456|SSF51161|TIGR01852 AFA_10170 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010084|IPR013114|IPR029069 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ|Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ|HotDog domain superfamily GO:0005737|GO:0006633|GO:0016836 G3DSA:3.10.129.10|MF_00406|PF07977|SSF54637|TIGR01750 AFA_10175 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001451|IPR007691|IPR011004|IPR020573 Hexapeptide repeat|Trimeric LpxA-like superfamily|UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD|UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016410|GO:0016747 G3DSA:2.160.10.10|G3DSA:3.40.1390.10|MF_00523|PF00132|PF04613|PF14602|SSF51161|TIGR01853 AFA_10180 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005632|IPR024930 Chaperone protein Skp|Skp domain superfamily GO:0051082 G3DSA:3.30.910.20|PF03938|PIRSF002094|SM00935|SSF111384 AFA_10185 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000184|IPR010827|IPR023707 Bacterial surface antigen (D15)|Outer membrane protein assembly factor BamA|POTRA domain, BamA/TamA-like GO:0019867|GO:0071709 G3DSA:2.40.160.50|G3DSA:3.10.20.310|MF_01430|PF01103|PF07244|PIRSF006076|TIGR03303 AFA_10190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001478|IPR004387|IPR008915|IPR036034 PDZ domain|PDZ superfamily|Peptidase M50|Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0005515|GO:0006508|GO:0016021 G3DSA:2.30.42.10|PF02163|PF13180|SM00228|SSF50156|TIGR00054 AFA_10195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003821|IPR013512|IPR013644|IPR026877|IPR036169|IPR036291 1-deoxy-D-xylulose 5-phosphate reductoisomerase|1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal|1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal|DXP reductoisomerase C-terminal domain|DXP reductoisomerase, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0005515|GO:0008299|GO:0030604|GO:0046872|GO:0055114|GO:0070402 G3DSA:1.10.1740.10|G3DSA:3.40.50.720|MF_00183|PF02670|PF08436|PF13288|PIRSF006205|SSF51735|SSF55347|SSF69055|TIGR00243 AFA_10200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 PF01148|PS01315 AFA_10205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001441|IPR018520|IPR036424 Decaprenyl diphosphate synthase-like|Decaprenyl diphosphate synthase-like superfamily|Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 G3DSA:3.40.1180.10|MF_01139|PF01255|PS01066|SSF64005|TIGR00055 AFA_10210 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002661|IPR023584|IPR036191 RRF superfamily|Ribosome recycling factor|Ribosome recycling factor domain GO:0006412 G3DSA:1.10.132.20|G3DSA:3.30.1360.40|MF_00040|PF01765|SSF55194|TIGR00496 AFA_10215 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001048|IPR011817|IPR015963|IPR036393 Acetylglutamate kinase-like superfamily|Aspartate/glutamate/uridylate kinase|Uridylate kinase|Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0009041|GO:0033862 G3DSA:3.40.1160.10|MF_01220_B|PF00696|PIRSF005650|SSF53633|TIGR02075 AFA_10220 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001816|IPR009060|IPR014039|IPR018101|IPR036402 Elongation factor Ts, dimerisation domain superfamily|Translation elongation factor EFTs/EF1B|Translation elongation factor EFTs/EF1B, dimerisation|Translation elongation factor Ts, conserved site|UBA-like superfamily GO:0003746|GO:0005515|GO:0005622|GO:0006414 G3DSA:1.10.286.20|G3DSA:1.10.8.10|G3DSA:3.30.479.20|MF_00050|PF00889|PS01127|SSF46934|SSF54713|TIGR00116 AFA_10225 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001865|IPR005706|IPR018130|IPR023591 Ribosomal protein S2|Ribosomal protein S2, bacteria/mitochondria/plastid|Ribosomal protein S2, conserved site|Ribosomal protein S2, flavodoxin-like domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015935 G3DSA:1.10.287.610|G3DSA:3.40.50.10490|MF_00291_B|PF00318|PR00395|PS00962|SSF52313|TIGR01011 AFA_10230 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000994|IPR001714|IPR002467|IPR036005 Creatinase/aminopeptidase-like|Peptidase M24|Peptidase M24, methionine aminopeptidase|Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 G3DSA:3.90.230.10|MF_01974|PF00557|PR00599|PS00680|SSF55920|TIGR00500 AFA_10235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002934|IPR003607|IPR006674|IPR010043|IPR013546 Bifunctional uridylyltransferase/uridylyl-removing enzyme|HD domain|HD/PDEase domain|PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase|Polymerase, nucleotidyl transferase domain GO:0006807|GO:0008773|GO:0016779 G3DSA:1.10.3210.10|MF_00277|PF01909|PF01966|PF08335|PIRSF006288|SM00471|SSF109604|SSF55021|SSF81301|TIGR01693 AFA_10240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 PF01914|TIGR00427 AFA_10245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003752|IPR023380 Disulphide bond formation protein DsbB/BdbC|DsbB-like superfamily GO:0015035|GO:0016020 G3DSA:1.20.1550.10|PF02600|SSF158442 AFA_10250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012550|IPR034660 DinB/YfiT-like putative metalloenzymes|Protein of unknown function DUF1706 G3DSA:1.20.120.450|PF08020|PIRSF031551|SSF109854 AFA_10255 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000836|IPR005854|IPR029055|IPR029057 Amidophosphoribosyltransferase|Nucleophile aminohydrolases, N-terminal|Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0004044|GO:0009113|GO:0009116 G3DSA:3.40.50.2020|G3DSA:3.60.20.10|MF_01931|PF00156|PF13522|PIRSF000485|SSF53271|SSF56235|TIGR01134 AFA_10260 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 PF02674 AFA_10265 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007730|IPR036680 Sporulation-like domain|Sporulation-like domain superfamily GO:0042834 G3DSA:3.30.70.1070|PF05036|SSF110997 AFA_10270 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001645|IPR004101|IPR013221|IPR036565|IPR036615 Folylpolyglutamate synthetase|Mur ligase, C-terminal|Mur ligase, C-terminal domain superfamily|Mur ligase, central|Mur-like, catalytic domain superfamily GO:0004326|GO:0005524|GO:0009058|GO:0009396|GO:0016874 G3DSA:3.40.1190.10|PF02875|PF08245|PIRSF001563|SSF53244|SSF53623|TIGR01499 AFA_10275 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000089|IPR001100|IPR003016|IPR004099|IPR006258|IPR011053|IPR012999|IPR016156|IPR023753|IPR036188 2-oxo acid dehydrogenase, lipoyl-binding site|Biotin/lipoyl attachment|Dihydrolipoamide dehydrogenase|FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|FAD/NAD-linked reductase, dimerisation domain superfamily|Pyridine nucleotide-disulphide oxidoreductase, class I|Pyridine nucleotide-disulphide oxidoreductase, class I, active site|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain|Single hybrid motif GO:0004148|GO:0009055|GO:0016491|GO:0016668|GO:0045454|GO:0050660|GO:0055114 G3DSA:2.40.50.100|G3DSA:3.30.390.30|G3DSA:3.50.50.60|PF00364|PF02852|PF07992|PIRSF000350|PR00368|PR00411|PS00076|PS00189|SSF51230|SSF51905|SSF55424|TIGR01350 AFA_10280 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000089|IPR001078|IPR003016|IPR004167|IPR006256|IPR011053|IPR023213|IPR036625 2-oxo acid dehydrogenase, lipoyl-binding site|2-oxoacid dehydrogenase acyltransferase, catalytic domain|Biotin/lipoyl attachment|Chloramphenicol acetyltransferase-like domain superfamily|Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex|E3-binding domain superfamily|Peripheral subunit-binding domain|Single hybrid motif GO:0004742|GO:0006096|GO:0016746|GO:0045254 G3DSA:2.40.50.100|G3DSA:3.30.559.10|G3DSA:4.10.320.10|PF00198|PF00364|PF02817|PS00189|SSF47005|SSF51230|SSF52777|TIGR01348 AFA_10285 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004660|IPR005474|IPR009014|IPR029061 2-oxo-acid dehydrogenase E1 component homodimeric type|Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase, N-terminal GO:0003824|GO:0016491|GO:0055114 G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF00456|PIRSF000156|SSF52518|SSF52922|TIGR00759 AFA_10290 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000014|IPR001610|IPR003594|IPR003661|IPR004358|IPR013656|IPR035965|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAC motif|PAS domain|PAS domain superfamily|PAS fold-4|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF02518|PF08448|PF13188|PR00344|SM00086|SM00091|SM00387|SM00388|SSF47384|SSF55785|SSF55874|TIGR00229 AFA_10295 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000792|IPR001789|IPR011006|IPR016032|IPR036388 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172 AFA_10300 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000672|IPR020630|IPR020631|IPR020867|IPR036291 NAD(P)-binding domain superfamily|Tetrahydrofolate dehydrogenase/cyclohydrolase|Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain|Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain|Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0004488|GO:0055114 G3DSA:3.40.50.10860|G3DSA:3.40.50.720|MF_01576|PF00763|PF02882|PR00085|PS00766|PS00767|SSF51735|SSF53223 AFA_10305 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001567|IPR024077 Neurolysin/Thimet oligopeptidase, domain 2|Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 G3DSA:1.10.1370.10|G3DSA:1.10.1370.40|PF01432|SSF55486 AFA_10310 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003782|IPR036249 Copper chaperone SCO1/SenC|Thioredoxin-like superfamily G3DSA:3.40.30.10|PF02630|SSF52833 AFA_10315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000640|IPR000795|IPR004161|IPR004540|IPR005225|IPR005517|IPR009000|IPR014721|IPR020568|IPR027417|IPR031157|IPR035647 EF-G domain III/V-like|Elongation factor EFG, domain V-like|P-loop containing nucleoside triphosphate hydrolase|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFG/EF2|Translation elongation factor EFG/EF2, domain IV|Translation elongation factor EFTu-like, domain 2|Translation protein, beta-barrel domain superfamily GO:0003746|GO:0003924|GO:0005525|GO:0005622|GO:0006414 G3DSA:2.40.30.10|G3DSA:3.30.230.10|G3DSA:3.30.70.240|G3DSA:3.30.70.870|G3DSA:3.40.50.300|MF_00054_B|PF00009|PF00679|PF03144|PF03764|PF14492|PR00315|PS00301|SM00838|SM00889|SSF50447|SSF52540|SSF54211|SSF54980|TIGR00231|TIGR00484 AFA_10320 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013830|IPR036514 SGNH hydrolase superfamily|SGNH hydrolase-type esterase domain G3DSA:3.40.50.1110|PF13472|SSF52266 AFA_10325 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001845|IPR036388|IPR036390 HTH ArsR-type DNA-binding domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF12840|PR00778|SM00418|SSF46785 AFA_10330 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001100|IPR004099|IPR016156|IPR023753|IPR036188|IPR036324 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|FAD/NAD-linked reductase, dimerisation domain superfamily|Manganese/iron superoxide dismutase, N-terminal domain superfamily|Pyridine nucleotide-disulphide oxidoreductase, class I|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0009055|GO:0016491|GO:0045454|GO:0050660|GO:0055114 G3DSA:1.10.287.990|G3DSA:3.30.390.30|G3DSA:3.50.50.60|PF02852|PF07992|PIRSF000350|PR00368|PR00411|SSF51905|SSF55424 AFA_10335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000551|IPR009061 MerR-type HTH domain|Putative DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.1660.10|PF13411|PR00040|PS00552|SM00422|SSF46955 AFA_10340 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 AFA_10345 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_10350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004682|IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA|TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480|PIRSF006470|TIGR00787 AFA_10355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001874|IPR036441 Dehydroquinase, class II|Dehydroquinase, class II superfamily GO:0003855 G3DSA:3.40.50.9100|PD004527|PF01220|PIRSF001399|SSF52304 AFA_10360 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SM00822|SSF51735 AFA_10365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735 AFA_10370 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF12697|SSF53474 AFA_10375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 AFA_10380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 AFA_10385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002155|IPR016039|IPR020613|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00737|SSF53901 AFA_10390 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002878|IPR012340 Domain of unknown function DUF35, OB-fold, C-terminal|Nucleic acid-binding, OB-fold PF01796|SSF50249 AFA_10395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF00561|SSF53474 AFA_10400 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000415|IPR026021|IPR029479 Nitroreductase|Nitroreductase-like|Putative NAD(P)H nitroreductase YdjA-like GO:0016491 G3DSA:3.40.109.10|PF00881|PIRSF000232|SSF55469 AFA_10405 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004569|IPR013785|IPR036130 Aldolase-type TIM barrel|Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ|Pyridoxine 5'-phosphate synthase GO:0003824|GO:0005737|GO:0008615|GO:0033856 G3DSA:3.20.20.70|MF_00279|PF03740|SSF63892|TIGR00559 AFA_10410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003423|IPR010131 Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT GO:0015562|GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|SSF56954|TIGR01845 AFA_10415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001036|IPR004764|IPR027463 Acriflavin resistance protein|Hydrophobe/amphiphile efflux-1 HAE1|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0006855|GO:0015562|GO:0016020|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866|TIGR00915 AFA_10420 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369|TIGR01730 AFA_10425 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_10430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_10435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007487|IPR028082 ABC transporter, substrate-binding protein|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF04392|SSF53822 AFA_10440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|SSF53335 AFA_10445 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002155|IPR016039|IPR020613|IPR020615|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00737|SSF53901|TIGR01930 AFA_10450 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002155|IPR016039|IPR020610|IPR020615|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|SSF53901|TIGR01930 AFA_10455 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006015|IPR006016|IPR014729 Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA G3DSA:3.40.50.620|PF00582|PIRSF006276|PR01438|SSF52402 AFA_10460 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 G3DSA:3.20.20.60|PF13714|SSF51621 AFA_10465 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_10470 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000310|IPR005308|IPR008286|IPR011193|IPR015421|IPR015422|IPR015424|IPR036633 Orn/Lys/Arg decarboxylase, C-terminal|Orn/Lys/Arg decarboxylase, C-terminal domain superfamily|Orn/Lys/Arg decarboxylase, N-terminal|Orn/Lys/Arg decarboxylase, major domain|Ornithine/lysine/arginine decarboxylase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0005737|GO:0006520|GO:0016831 G3DSA:3.40.50.2300|G3DSA:3.40.640.10|G3DSA:3.90.100.10|G3DSA:3.90.1150.10|PF01276|PF03709|PF03711|PIRSF009393|PS00703|SSF53383|SSF55904 AFA_10480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004808|IPR005135|IPR036691 AP endonuclease 1|Endonuclease/exonuclease/phosphatase|Endonuclease/exonuclease/phosphatase superfamily GO:0004518|GO:0006281 G3DSA:3.60.10.10|PF03372|SSF56219|TIGR00195|TIGR00633 AFA_10490 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008145|IPR017665|IPR020590|IPR027417 Guanylate kinase|Guanylate kinase, conserved site|Guanylate kinase/L-type calcium channel beta subunit|P-loop containing nucleoside triphosphate hydrolase GO:0004385|GO:0006163 G3DSA:3.30.63.10|G3DSA:3.40.50.300|MF_00328|PF00625|PS00856|SM00072|SSF52540|TIGR03263 AFA_10495 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003716|IPR006110|IPR012293|IPR036161 DNA-directed RNA polymerase, omega subunit|RNA polymerase subunit, RPB6/omega|RNA polymerase, subunit omega/K/RPB6|RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 G3DSA:3.90.940.10|MF_00366|PF01192|SM01409|SSF63562|TIGR00690 AFA_10500 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002912|IPR003607|IPR004095|IPR004811|IPR007685|IPR012675|IPR012676 ACT domain|Beta-grasp domain superfamily|HD/PDEase domain|RelA/SpoT|RelA/SpoT family|TGS|TGS-like GO:0015969 G3DSA:1.10.3210.10|G3DSA:3.10.20.30|G3DSA:3.30.460.10|G3DSA:3.30.70.260|PF02824|PF04607|PF13291|PF13328|SM00471|SM00954|SSF109604|SSF55021|SSF81271|SSF81301|TIGR00691 AFA_10505 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008407 Branched-chain amino acid transport, AzlD PF05437 AFA_10510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011606 Branched-chain amino acid transport, permease PF03591 AFA_10515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011055|IPR016047 Duplicated hybrid motif|Peptidase M23 G3DSA:2.60.40.1590|G3DSA:2.70.70.10|PF01551|SSF51261 AFA_10520 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000297|IPR023058|IPR027304 Peptidyl-prolyl cis-trans isomerase, PpiC-type|Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site|Trigger factor/SurA domain superfamily GO:0003755 G3DSA:1.10.4030.30|G3DSA:3.10.50.40|PF00639|PF13624|PS01096|SSF109998|SSF54534 AFA_10525 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017946|IPR030395 Glycerophosphodiester phosphodiesterase domain|PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 G3DSA:3.20.20.190|PF03009|SSF51695 AFA_10530 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007473|IPR029063 Ribosomal RNA large subunit methyltransferase J|S-adenosyl-L-methionine-dependent methyltransferase GO:0008649|GO:0070475 G3DSA:3.40.50.150|MF_00934|PF04378|SSF53335 AFA_10535 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000748|IPR002942|IPR006145|IPR020103|IPR036986 Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, RsuA/RluB/E/F|Pseudouridine synthase, catalytic domain superfamily|RNA-binding S4 domain|RNA-binding S4 domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982|GO:0016866 G3DSA:3.10.290.10|G3DSA:3.30.2350.10|PF00849|PF01479|SM00363|SSF55120|SSF55174|TIGR00093 AFA_10540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007440|IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily|Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 G3DSA:3.40.1410.10|MF_01632|PF04345|SSF64288 AFA_10545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_10550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR020471|IPR023210|IPR036812 Aldo/keto reductase|NADP-dependent oxidoreductase domain|NADP-dependent oxidoreductase domain superfamily GO:0016491|GO:0055114 G3DSA:3.20.20.100|PF00248|PIRSF000097|PR00069|SSF51430 AFA_10555 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002187|IPR002332|IPR011322|IPR015867|IPR017918 Nitrogen regulatory PII-like, alpha/beta|Nitrogen regulatory protein P-II, urydylation site|Nitrogen regulatory protein PII|Nitrogen regulatory protein PII, conserved site|Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal GO:0006808|GO:0030234 G3DSA:3.30.70.120|PF00543|PIRSF039144|PR00340|PS00496|PS00638|SM00938|SSF54913 AFA_10560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006685|IPR010920|IPR023408 LSM domain superfamily|Mechanosensitive ion channel MscS|Mechanosensitive ion channel MscS domain superfamily GO:0016020|GO:0055085 G3DSA:2.30.30.60|PF00924|SSF50182 AFA_10565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000362|IPR008948|IPR009049|IPR020557|IPR022761|IPR024083|IPR029419 Argininosuccinate lyase|Argininosuccinate lyase, C-terminal|Fumarase/histidase, N-terminal|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like GO:0003824|GO:0004056|GO:0042450 G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|MF_00006|PF00206|PF14698|PR00145|PR00149|PS00163|SSF48557|TIGR00838 AFA_10570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR026866|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Protein CR006, P-loop domain G3DSA:3.40.50.300|PF13166|SSF52540 AFA_10575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002692|IPR014395|IPR023343|IPR029055 Nucleophile aminohydrolases, N-terminal|Penicillin amidase type, domain 1|Penicillin/GL-7-ACA/AHL acylase|Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0016811|GO:0017000 G3DSA:1.10.1400.10|G3DSA:1.10.287.150|G3DSA:1.10.439.10|G3DSA:2.30.120.10|G3DSA:3.60.20.10|PF01804|PIRSF001227|SSF56235 AFA_10580 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006076|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905 AFA_10585 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001647|IPR004111|IPR009057|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily|Tetracycline transcriptional regulator, TetR, C-terminal GO:0003677|GO:0045892 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PF02909|SSF46689|SSF48498 AFA_10590 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001566|IPR010280|IPR012340|IPR029063|IPR030390|IPR030391 (Uracil-5)-methyltransferase family|23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD|Nucleic acid-binding, OB-fold|RNA methyltransferase TrmA, active site|RNA methyltransferase TrmA, conserved site|S-adenosyl-L-methionine-dependent methyltransferase GO:0003723|GO:0006396|GO:0008173 G3DSA:2.40.50.140|G3DSA:3.40.1350.30|G3DSA:3.40.50.150|MF_01010|PF05958|PS01230|PS01231|SSF50249|SSF53335|TIGR00479 AFA_10595 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011055|IPR016047|IPR018392|IPR036779 Duplicated hybrid motif|LysM domain|LysM domain superfamily|Peptidase M23 G3DSA:2.70.70.10|G3DSA:3.10.350.10|PF01476|PF01551|SM00257|SSF51261 AFA_10600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000682|IPR029063 Protein-L-isoaspartate(D-aspartate) O-methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase GO:0004719|GO:0006464 G3DSA:3.40.50.150|MF_00090|PF01135|PS01279|SSF53335|TIGR00080 AFA_10605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002828|IPR030048|IPR036523 SurE-like phosphatase/nucleotidase superfamily|Survival protein SurE|Survival protein SurE-like phosphatase/nucleotidase GO:0008252|GO:0016787 G3DSA:3.40.1210.10|MF_00060|PF01975|SSF64167|TIGR00087 AFA_10610 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 MF_01043|PF02660|SM01207|TIGR00023 AFA_10615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000905|IPR017861|IPR022450 Gcp-like domain|Kae1/TsaD family|tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 G3DSA:3.30.420.40|MF_01445|PF00814|PR00789|SSF53067|TIGR00329|TIGR03723 AFA_10620 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006043|IPR026033 Purine permease PbuG-like|Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 PF00860|PIRSF005353 AFA_10625 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005746|IPR013766|IPR017937|IPR036249 Thioredoxin|Thioredoxin domain|Thioredoxin, conserved site|Thioredoxin-like superfamily GO:0006662|GO:0015035|GO:0045454 G3DSA:3.40.30.10|PF00085|PIRSF000077|PR00421|PS00194|SSF52833|TIGR01068 AFA_10630 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018592|IPR023122 NE1680-like superfamily|Protein of unknown function DUF2024 G3DSA:3.10.510.10|PF09630|SSF160766 AFA_10635 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013740|IPR036249 Redoxin|Thioredoxin-like superfamily GO:0016491 G3DSA:3.40.30.10|PF08534|SSF52833 AFA_10640 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001498|IPR015269|IPR020568|IPR035647|IPR036956 EF-G domain III/V-like|Impact, N-terminal|Impact, N-terminal domain superfamily|Ribosomal protein S5 domain 2-type fold|Uncharacterised domain UPF0029, Impact, C-terminal G3DSA:3.30.230.30|PF01205|PF09186|SSF54211|SSF54980 AFA_10645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR032781 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-transporter extension domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12848|PS00211|SM00382|SSF52540 AFA_10650 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003507|IPR027461|IPR027478|IPR029062 Class I glutamine amidotransferase-like|LD-carboxypeptidase A, C-terminal domain superfamily|Murein tetrapeptide carboxypeptidase, N-terminal|Peptidase family S66 G3DSA:3.40.50.10740|G3DSA:3.50.30.60|PF02016|PIRSF028757|SSF141986|SSF52317 AFA_10655 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016192|IPR016193|IPR028883 APOBEC/CMP deaminase, zinc-binding|Cytidine deaminase-like|tRNA-specific adenosine deaminase GO:0002100|GO:0003824|GO:0008251|GO:0008270|GO:0016787 G3DSA:3.40.140.10|MF_00972|PF14437|PS00903|SSF53927 AFA_10660 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_10665 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000412|IPR013525 ABC-2 transporter|ABC-2 type transporter GO:0016020|GO:0016021|GO:0043190|GO:0055085 PF01061|PIRSF006648|PR00164 AFA_10670 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004010 Double Cache domain 2 G3DSA:3.30.450.20|PF08269 AFA_10675 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 AFA_10680 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_10685 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004682|IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA|TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480|PIRSF006470|SSF53850|TIGR00787 AFA_10690 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006076|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905 AFA_10695 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR032710|IPR037401 NTF2-like domain superfamily|SnoaL-like domain G3DSA:3.10.450.50|PF12680|SSF54427 AFA_10700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008867|IPR013785|IPR033983 Aldolase-type TIM barrel|Thiazole synthase|Thiazole synthase ThiG GO:0003824|GO:0009228 G3DSA:3.20.20.70|MF_00443|PF05690|SSF110399 AFA_10705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011766|IPR012000|IPR012001|IPR017820|IPR029035|IPR029061 DHS-like NAD/FAD-binding domain superfamily|Sulphoacetaldehyde acetyltransferase|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain|Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0003824|GO:0005737|GO:0019529|GO:0030976|GO:0050487 G3DSA:3.40.50.1220|G3DSA:3.40.50.970|PF00205|PF02775|PF02776|SSF52467|SSF52518|TIGR03457 AFA_10710 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003593|IPR011704|IPR025865|IPR027417 AAA+ ATPase domain|ATPase, dynein-related, AAA domain|Cobaltochelatase subunit CobS N-terminal domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF07728|PF12556|SM00382|SSF52540 AFA_10715 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006538|IPR025861|IPR036465 Cobalamin biosynthesis protein CobT VWA domain|Cobalt chelatase, CobT subunit|von Willebrand factor A-like domain superfamily GO:0009236 G3DSA:3.40.50.410|PF06213|PF11775|PIRSF031715|SSF53300 AFA_10720 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 AFA_10725 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002505|IPR004614|IPR012147 Phosphate acetyl/butaryl transferase|Phosphate acetyl/butyryltransferase|Phosphate acetyltransferase GO:0016407|GO:0016746 G3DSA:3.40.50.10750|G3DSA:3.40.50.10950|PF01515|PIRSF000428|SSF53659|TIGR00651 AFA_10730 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002781 Transmembrane protein TauE-like GO:0016021 PF01925 AFA_10735 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF00583|SSF55729 AFA_10740 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007551|IPR035570|IPR035571|IPR036183 Protein of unknown function DUF520|UPF0234, N-terminal|UPF0234-like, C-terminal|YajQ-like superfamily G3DSA:3.30.70.860|G3DSA:3.30.70.990|MF_00632|PF04461|SSF89963 AFA_10745 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 AFA_10750 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003691 Putative fluoride ion transporter CrcB GO:0016021 MF_00454|PF02537|TIGR00494 AFA_10755 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017926|IPR029062 Class I glutamine amidotransferase-like|Glutamine amidotransferase G3DSA:3.40.50.880|PF00117|SSF52317 AFA_10760 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003313|IPR009057|IPR011051|IPR014710|IPR018060|IPR018062|IPR020449 AraC-type arabinose-binding/dimerisation domain|DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox-like domain superfamily|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold|Transcription regulator HTH, AraC- type GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:2.60.120.10|PF02311|PF12833|PR00032|PS00041|SM00342|SSF46689|SSF51182 AFA_10765 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016833|IPR038770 Putative sodium bile acid cotransporter|Sodium/solute symporter superfamily G3DSA:1.20.1530.20|PF13593|PIRSF026166 AFA_10775 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000866|IPR001640|IPR017937|IPR036249 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant|Prolipoprotein diacylglyceryl transferase|Thioredoxin, conserved site|Thioredoxin-like superfamily GO:0016020|GO:0016209|GO:0016491|GO:0016757|GO:0042158|GO:0045454|GO:0055114 G3DSA:3.40.30.10|PF00578|PF01790|PS00194|SSF52833 AFA_10780 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001240|IPR011060|IPR013785 Aldolase-type TIM barrel|N-(5'phosphoribosyl) anthranilate isomerase (PRAI)|Ribulose-phosphate binding barrel GO:0003824|GO:0004640|GO:0006568 G3DSA:3.20.20.70|MF_00135|PF00697|SSF51366 AFA_10785 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit PF06808 AFA_10790 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_10795 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001406|IPR020095|IPR020097|IPR020103 Pseudouridine synthase I, TruA|Pseudouridine synthase I, TruA, C-terminal|Pseudouridine synthase I, TruA, alpha/beta domain|Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.30.70.580|G3DSA:3.30.70.660|MF_00171|PF01416|PIRSF001430|SSF55120|TIGR00071 AFA_10800 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018392|IPR020012|IPR036779 LysM domain|LysM domain superfamily|Motility protein FimV, N-terminal G3DSA:3.10.350.10|PF01476|TIGR03505 AFA_10805 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000319|IPR000534|IPR011534|IPR012080|IPR012280|IPR036291 Aspartate-semialdehyde dehydrogenase|Aspartate-semialdehyde dehydrogenase, conserved site|Aspartate-semialdehyde dehydrogenase, gamma-type|NAD(P)-binding domain superfamily|Semialdehyde dehydrogenase, NAD-binding|Semialdehyde dehydrogenase, dimerisation domain GO:0004073|GO:0005737|GO:0006520|GO:0008652|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0016620|GO:0046983|GO:0050661|GO:0051287|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_02121|PF01118|PF02774|PIRSF000148|PS01103|SM00859|SSF51735|SSF55347|TIGR01745 AFA_10810 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004429|IPR019818|IPR024084 Isocitrate/isopropylmalate dehydrogenase, conserved site|Isopropylmalate dehydrogenase|Isopropylmalate dehydrogenase-like domain GO:0000287|GO:0003862|GO:0005737|GO:0009098|GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.718.10|MF_01033|PF00180|PS00470|SM01329|SSF53659|TIGR00169 AFA_10815 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000573|IPR004431|IPR015928 3-isopropylmalate dehydratase, small subunit|Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase/3-isopropylmalate dehydratase, swivel GO:0003861|GO:0009098|GO:0009316 G3DSA:3.20.19.10|MF_01031|PF00694|SSF52016|TIGR00171 AFA_10820 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001030|IPR004430|IPR015931|IPR018136|IPR036008 3-isopropylmalate dehydratase, large subunit|Aconitase family, 4Fe-4S cluster binding site|Aconitase, iron-sulfur domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0003861|GO:0009098|GO:0051539 G3DSA:3.30.499.10|G3DSA:3.30.499.20|MF_01026|PF00330|PR00415|PS00450|PS01244|SSF53732|TIGR00170 AFA_10825 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003779|IPR004675|IPR029032 AhpD-like|Alkylhydroperoxidase AhpD core|Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 G3DSA:1.20.1290.10|PF02627|SSF69118|TIGR00778 AFA_10830 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005624|IPR038084 GlcG-like domain superfamily|Haem-degrading G3DSA:3.30.450.150|PF03928|SSF143744 AFA_10835 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000792|IPR001789|IPR011006|IPR016032|IPR036388 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172 AFA_10840 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR003661|IPR004358|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PR00344|SM00387|SM00388|SSF47384|SSF55874 AFA_10845 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001915 Peptidase M48 GO:0004222|GO:0006508 PF01435 AFA_10850 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000453|IPR020541|IPR035904 Chorismate synthase|Chorismate synthase AroC superfamily|Chorismate synthase, conserved site GO:0004107|GO:0009073 G3DSA:3.60.150.10|MF_00300|PF01264|PIRSF001456|PS00787|PS00788|PS00789|SSF103263|TIGR00033 AFA_10855 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003846 Uncharacterised protein family UPF0061 MF_00692|PF02696 AFA_10860 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018643 Protein of unknown function DUF2069, membrane PF09842 AFA_10865 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017039|IPR023679 Uncharacterised protein family UPF0761, bacterial|Virulence factor BrkB MF_00672|PF03631|TIGR00765 AFA_10870 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000644 CBS domain G3DSA:3.10.580.10|PF00571|SM00116|SSF54631 AFA_10875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001269|IPR004653|IPR013785|IPR018517 Aldolase-type TIM barrel|tRNA-dihydrouridine synthase|tRNA-dihydrouridine synthase, conserved site|tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0003824|GO:0008033|GO:0017150|GO:0050660|GO:0055114 G3DSA:1.20.120.1460|G3DSA:3.20.20.70|MF_02041|PF01207|PIRSF006621|PS01136|SSF51395 AFA_10880 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002575|IPR005280|IPR011009 Aminoglycoside phosphotransferase|Homoserine kinase, type II|Protein kinase-like domain superfamily GO:0004413|GO:0009088 G3DSA:3.30.200.20|G3DSA:3.90.1200.10|MF_00301|PF01636|SSF56112|TIGR00938 AFA_10895 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018076 Type II secretion system F domain PF00482 AFA_10900 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018076 Type II secretion system F domain G3DSA:1.20.81.30|PF00482 AFA_10905 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000253|IPR001482|IPR008984|IPR027417 Forkhead-associated (FHA) domain|P-loop containing nucleoside triphosphate hydrolase|SMAD/FHA domain superfamily|Type II/IV secretion system protein GO:0005515 G3DSA:2.60.200.20|G3DSA:3.30.450.380|G3DSA:3.40.50.300|PF00437|PF00498|SM00240|SSF49879|SSF52540 AFA_10910 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001775|IPR004845|IPR004846|IPR032789 GspD/PilQ family|Pilus formation protein, N-terminal|Type II secretion system GspD, conserved site|Type II/III secretion system GO:0008565|GO:0009306 PF00263|PF13629|PR00811|PS00875 AFA_10915 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013974|IPR017592|IPR031571 Flp pilus assembly protein RcpC/CpaB domain|Pilus assembly, Flp-type CpaB|SAF domain PF08666|PF16976|SM00858|TIGR03177 AFA_10940 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR010105|IPR011662|IPR012910|IPR036942|IPR037066 Secretin/TonB, short N-terminal domain|TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily|TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0019867|GO:0038023 G3DSA:2.170.130.10|G3DSA:2.40.170.20|G3DSA:3.55.50.30|PF00593|PF07715|SM00965|SSF56935|TIGR01783 AFA_10945 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006860|IPR012373|IPR032508|IPR032623 Fe(2+)-dicitrate sensor, transmembrane component|FecR protein|FecR, N-terminal|Protein FecR, C-terminal G3DSA:2.60.120.1440|PF04773|PF16220|PF16344|PIRSF018266 AFA_10950 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007627|IPR013249|IPR013324|IPR013325|IPR014284|IPR036388 RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|PF04542|PF08281|SSF88659|SSF88946|TIGR02937 AFA_10955 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011234|IPR036663 Fumarylacetoacetase-like, C-terminal|Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 G3DSA:3.90.850.10|PF01557|SSF56529 AFA_10960 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008162|IPR036649 Inorganic pyrophosphatase|Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 G3DSA:3.90.80.10|MF_00209|PF00719|PS00387|SSF50324 AFA_10965 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005254|IPR010817|IPR011990|IPR019734 HemY, N-terminal|Heme biosynthesis-associated TPR protein|Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0005515|GO:0016020|GO:0042168 G3DSA:1.25.40.10|PF07219|PF13181|SSF48452|TIGR00540 AFA_10970 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX PF04375 AFA_10975 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003754|IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase|Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 G3DSA:3.40.50.10090|PF02602|SSF69618 AFA_10980 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000860|IPR022417|IPR022418|IPR022419|IPR036803 Porphobilinogen deaminase|Porphobilinogen deaminase, C-terminal|Porphobilinogen deaminase, C-terminal domain superfamily|Porphobilinogen deaminase, N-terminal|Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 G3DSA:3.30.160.40|G3DSA:3.40.190.10|MF_00260|PF01379|PF03900|PIRSF001438|PR00151|PS00533|SSF53850|SSF54782|TIGR00212 AFA_10985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005496|IPR022301 Integral membrane protein TerC|Integral membrane protein YjbE GO:0016021 PF03741|TIGR03717 AFA_10990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003781|IPR005810|IPR005811|IPR016102|IPR017440|IPR033847|IPR036291 ATP-citrate lyase/succinyl-CoA ligase|ATP-citrate lyase/succinyl-CoA ligase, active site|ATP-citrate lyase/succinyl-CoA ligase, conserved site|CoA-binding|NAD(P)-binding domain superfamily|Succinyl-CoA ligase, alpha subunit|Succinyl-CoA synthetase-like GO:0003824|GO:0048037 G3DSA:3.40.50.261|G3DSA:3.40.50.720|MF_01988|PF00549|PF02629|PIRSF001553|PR01798|PS00399|PS01216|SM00881|SSF51735|SSF52210|TIGR01019 AFA_10995 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005809|IPR005811|IPR013650|IPR013815|IPR016102|IPR017866 ATP-citrate lyase/succinyl-CoA ligase|ATP-grasp fold, subdomain 1|ATP-grasp fold, succinyl-CoA synthetase-type|Succinate--CoA synthetase, beta subunit|Succinyl-CoA synthetase, beta subunit, conserved site|Succinyl-CoA synthetase-like GO:0003824|GO:0005524|GO:0006099 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.261|MF_00558|PF00549|PF08442|PIRSF001554|PS01217|SSF52210|SSF56059|TIGR01016 AFA_11000 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021312 Protein of unknown function DUF2889 PF11136 AFA_11005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002629|IPR006276|IPR013215|IPR038071 Cobalamin-independent methionine synthase|Cobalamin-independent methionine synthase MetE, C-terminal/archaeal|Cobalamin-independent methionine synthase MetE, N-terminal|UROD/MetE-like superfamily GO:0003871|GO:0008270|GO:0008652|GO:0009086 G3DSA:3.20.20.210|MF_00172|PF01717|PF08267|PIRSF000382|SSF51726|TIGR01371 AFA_11010 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_11015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003783|IPR036388 Regulatory protein RecX|Winged helix-like DNA-binding domain superfamily GO:0006282 G3DSA:1.10.10.10|MF_01114|PF02631 AFA_11025 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 AFA_11030 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR003661|IPR004358|IPR013727|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal|Two-component sensor kinase, N-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PF08521|PR00344|SM00387|SM00388|SSF47384|SSF55874 AFA_11035 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005828|IPR005829|IPR036259 MFS transporter superfamily|Major facilitator, sugar transporter-like|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1250.20|PF00083|PS00217|SSF103473 AFA_11040 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007476 Putative exonuclease, RdgC GO:0006310 MF_00194|PF04381 AFA_11045 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009057|IPR018060|IPR032687 DNA binding HTH domain, AraC-type|HTH-type transcriptional regulator AraC-type, N-terminal|Homeobox-like domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12625|PF12833|SM00342|SSF46689 AFA_11050 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 AFA_11055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001753|IPR014748|IPR018376|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|SSF52096 AFA_11060 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007436 Protein of unknown function DUF485 PF04341 AFA_11065 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001734|IPR018212|IPR038377 Sodium/glucose symporter superfamily|Sodium/solute symporter|Sodium/solute symporter, conserved site GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1730.10|PF00474|PS00456|TIGR00813 AFA_11070 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010061|IPR015590|IPR016160|IPR016161|IPR016162|IPR016163 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde/histidinol dehydrogenase|Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|SSF53720|TIGR01722 AFA_11075 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002082|IPR006130|IPR006131|IPR006132|IPR036901 Aspartate carbamoyltransferase|Aspartate/ornithine carbamoyltransferase|Aspartate/ornithine carbamoyltransferase superfamily|Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain|Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0004070|GO:0006207|GO:0006520|GO:0016597|GO:0016743 G3DSA:3.40.50.1370|PF00185|PF02729|PR00100|PR00101|PS00097|SSF53671|TIGR00670 AFA_11085 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:3.30.1360.200 AFA_11090 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001264|IPR001460|IPR009647|IPR011815|IPR012338|IPR023346|IPR036950 Beta-lactamase/transpeptidase-like|Glycosyl transferase, family 51|Lysozyme-like domain superfamily|Penicillin binding protein transglycosylase domain|Penicillin-binding protein 1C|Penicillin-binding protein, transpeptidase|Penicillin-binding, C-terminal GO:0008658|GO:0008955|GO:0009252 G3DSA:1.10.3810.10|G3DSA:3.40.710.10|PF00905|PF00912|PF06832|SSF53955|SSF56601|TIGR02073 AFA_11095 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001599|IPR002890|IPR008930|IPR011625 Alpha-2-macroglobulin|Alpha-2-macroglobulin, N-terminal|Alpha-2-macroglobulin, N-terminal 2|Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid GO:0004866 PF00207|PF01835|PF07703|PF11974|SM01359|SM01360|SSF48239 AFA_11105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004136|IPR013785 Aldolase-type TIM barrel|Nitronate monooxygenase GO:0003824|GO:0018580|GO:0055114 G3DSA:3.20.20.70|PF03060|SSF51412 AFA_11110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004558|IPR006638|IPR007197|IPR010723|IPR023404 Elp3/MiaB/NifB|HemN, C-terminal|Oxygen-independent coproporphyrinogen III oxidase HemN|Radical SAM|Radical SAM, alpha/beta horseshoe GO:0003824|GO:0004109|GO:0005737|GO:0006779|GO:0051536|GO:0055114 G3DSA:1.10.10.920|G3DSA:3.80.30.20|PF04055|PF06969|PIRSF000167|SM00729|SSF102114|TIGR00538 AFA_11115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001516|IPR001750|IPR007182|IPR025383 Domain of unknown function DUF4040|NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit|Na+/H+ antiporter MnhB subunit-related protein PF00361|PF00662|PF04039|PF13244|PR01434 AFA_11120 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like PF00420 AFA_11125 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF00361 AFA_11130 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 PF01899|PIRSF019239 AFA_11135 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 PF04066|PIRSF028784 AFA_11140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 PF03334|TIGR01300 AFA_11150 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003855|IPR023051 Potassium transporter|Potassium uptake protein, low affinity, Kup GO:0015079|GO:0016020|GO:0071805 MF_01522|PF02705 AFA_11155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR003661|IPR004358|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PR00344|SM00387|SM00388|SSF47384|SSF55874 AFA_11160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 AFA_11165 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 G3DSA:3.30.420.270|PF02472 AFA_11170 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002898 MotA/TolQ/ExbB proton channel PF01618 AFA_11175 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003538|IPR006260|IPR037682 Gram-negative bacterial TonB protein|TonB, C-terminal|TonB/TolA, C-terminal GO:0015343|GO:0015891|GO:0030288|GO:0031992|GO:0055085 G3DSA:3.30.1150.10|PF03544|PF16031|PR01374|SSF74653|TIGR01352 AFA_11180 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR005666|IPR008995|IPR017871|IPR024765|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Sulphate transport system permease protein 1|TOBE-like domain GO:0005524|GO:0008272|GO:0015419|GO:0016020|GO:0016887|GO:0043190 G3DSA:3.40.50.300|PF00005|PF12857|PS00211|SM00382|SSF50331|SSF52540|TIGR00968 AFA_11185 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR005667|IPR011866|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Sulphate ABC transporter permease protein 2|Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0015419|GO:0016020|GO:0016021|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR00969|TIGR02140 AFA_11190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR005667|IPR011865|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Sulphate ABC transporter permease protein 2|Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0015419|GO:0016020|GO:0016021|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR00969|TIGR02139 AFA_11195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 G3DSA:3.40.190.10|PF13531|SSF53850|TIGR00971 AFA_11200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF13649|SSF53335 AFA_11210 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002059|IPR011129|IPR012156|IPR012340|IPR019844 Cold shock domain|Cold shock, CspA|Cold-shock conserved site|Cold-shock protein, DNA-binding|Nucleic acid-binding, OB-fold GO:0003676|GO:0003677|GO:0006355 G3DSA:2.40.50.140|PF00313|PIRSF002599|PR00050|PS00352|SM00357|SSF50249 AFA_11230 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000119|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 G3DSA:4.10.520.10|PF00216|PR01727|PS00045|SM00411|SSF47729 AFA_11235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000878|IPR003043|IPR006366|IPR014776|IPR014777|IPR035996 Tetrapyrrole methylase|Tetrapyrrole methylase superfamily|Tetrapyrrole methylase, subdomain 1|Tetrapyrrole methylase, subdomain 2|Uroporphiryn-III C-methyltransferase, conserved site|Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354|GO:0055114 G3DSA:3.30.950.10|G3DSA:3.40.1010.10|PF00590|PS00839|PS00840|SSF53790|TIGR01469 AFA_11240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009056|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF13442|SSF46626 AFA_11245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003143|IPR011048 Cytochrome cd1-nitrite reductase, C-terminal domain superfamily|Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily G3DSA:2.140.10.20|PF02239|SSF51004 AFA_11250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:3.30.70.3460 AFA_11255 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000485|IPR019888|IPR036388|IPR036390 AsnC-type HTH domain|Transcription regulator AsnC-type|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.70.3460|PF13404|SM00344|SSF46785 AFA_11260 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR036390 Winged helix DNA-binding domain superfamily G3DSA:3.30.70.3460|SSF46785 AFA_11265 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007197|IPR013785|IPR017200|IPR023885|IPR023992 4Fe4S-binding SPASM domain|Aldolase-type TIM barrel|Coenzyme PQQ synthesis protein E|Heme D1 biosynthesis, radical SAM protein NirJ|Radical SAM GO:0003824|GO:0051536 G3DSA:3.20.20.70|PF04055|PF13186|PF13353|PIRSF037420|SSF102114|TIGR04051|TIGR04085 AFA_11275 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006367|IPR019478|IPR028281|IPR035996|IPR036291 NAD(P)-binding domain superfamily|Sirohaem synthase, N-terminal|Sirohaem synthase, dimerisation domain|Siroheme synthase, central domain|Tetrapyrrole methylase superfamily GO:0006779|GO:0008168|GO:0019354|GO:0055114 G3DSA:3.30.160.110|G3DSA:3.40.50.720|PF10414|PF13241|PF14824|SSF51735|SSF53790|SSF75615|TIGR01470 AFA_11280 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009056|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF00034|SSF46626 AFA_11285 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003143|IPR009056|IPR011048|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily|Cytochrome cd1-nitrite reductase, C-terminal domain superfamily|Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|G3DSA:2.140.10.20|PF02239|PF13442|SSF46626|SSF51004 AFA_11290 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR015421|IPR015424|IPR036388|IPR036390 Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major domain|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0003824|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.640.10|PF00392|SM00345|SSF46785|SSF53383 AFA_11295 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000277|IPR015421|IPR015422|IPR015424 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01053|PIRSF001434|SSF53383 AFA_11300 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001537|IPR004441|IPR013123|IPR024915|IPR029026|IPR029028|IPR029064 23S rRNA (guanosine-2-O-)-methyltransferase RlmB|50S ribosomal protein L30e-like|Alpha/beta knot methyltransferases|RNA 2-O ribose methyltransferase, substrate binding|RNA methyltransferase TrmH family|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008168|GO:0008173 G3DSA:3.30.1330.30|G3DSA:3.40.1280.10|MF_01887|PF00588|PF08032|SM00967|SSF55315|SSF75217|TIGR00186 AFA_11305 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001900|IPR003029|IPR004476|IPR011129|IPR011805|IPR012340|IPR013223|IPR022966|IPR022967 Cold shock domain|Nucleic acid-binding, OB-fold|RNA-binding domain, S1|Ribonuclease B, N-terminal OB domain|Ribonuclease II/R|Ribonuclease II/R, conserved site|Ribonuclease II/ribonuclease R|Ribonuclease R|S1 domain GO:0003676|GO:0003723|GO:0004518|GO:0004540|GO:0016070 G3DSA:2.40.50.140|MF_01895|PF00575|PF00773|PF08206|PS01175|SM00316|SM00357|SM00955|SSF50249|TIGR00358|TIGR02063 AFA_11315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006121|IPR036163 Heavy metal-associated domain superfamily|Heavy metal-associated domain, HMA GO:0030001|GO:0046872 G3DSA:3.30.70.100|PF00403|SSF55008 AFA_11335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007037|IPR013113|IPR017938|IPR039261 FAD-binding 9, siderophore-interacting|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Riboflavin synthase-like beta-barrel|Siderophore-interacting protein, C-terminal domain G3DSA:2.40.30.10|G3DSA:3.40.50.80|PF04954|PF08021|SSF63380 AFA_11340 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005149|IPR036388|IPR036390 Transcription regulator PadR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily G3DSA:1.10.10.10|PF03551|SSF46785 AFA_11350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003953|IPR006905|IPR036188 FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain superfamily|Flavin-dependent halogenase G3DSA:3.30.9.100|G3DSA:3.50.50.60|PF00890|PF04820|PR00420|SSF51905 AFA_11355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000045|IPR014032 Peptidase A24A, prepilin type IV, bacterial|Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 G3DSA:1.20.120.1220|PF01478|PR00864 AFA_11360 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR037291 Domain of unknown function DUF4139 PF13598 AFA_11365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_11370 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR008995|IPR017666|IPR017871|IPR027417 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2|AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF50331|SSF52540|TIGR03265 AFA_11375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR017664|IPR035906 2-aminoethylphosphonate ABC transport system, permease protein, putative|ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR03262 AFA_11380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006323|IPR006439|IPR023198|IPR023214|IPR036412 HAD hydrolase, subfamily IA|HAD superfamily|HAD-like superfamily|Phosphoglycolate phosphatase-like, domain 2|Phosphonoacetaldehyde hydrolase GO:0016787|GO:0019700|GO:0050194 G3DSA:1.10.150.240|G3DSA:3.40.50.1000|MF_01375|PF13419|SSF56784|TIGR01422|TIGR01509 AFA_11385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017663|IPR026045 ABC transport system, 1-aminoethylphosphonate-binding protein, putative|Ferric binding protein G3DSA:3.40.190.10|PF13343|PIRSF002825|SSF53850|TIGR03261 AFA_11390 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006076|IPR017741|IPR036188 FAD dependent oxidoreductase|FAD-dependent oxidoreductase, HpnW|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905|TIGR03364 AFA_11395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF00583|SSF55729 AFA_11405 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002925|IPR029058 Alpha/Beta hydrolase fold|Dienelactone hydrolase GO:0016787 G3DSA:3.40.50.1820|PF01738|SSF53474 AFA_11410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR024530 Putative quorum-sensing-regulated virulence factor PD056452|PF12843 AFA_11415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004045|IPR004046|IPR036249|IPR036282 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF02798|PF14497|SSF47616|SSF52833 AFA_11420 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003718|IPR015946|IPR036102 K homology domain-like, alpha/beta|OsmC/Ohr family|OsmC/Ohr superfamily G3DSA:3.30.300.20|PF02566|SSF82784 AFA_11425 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003829|IPR008778|IPR011051|IPR012093|IPR014710 Pirin|Pirin, C-terminal domain|Pirin, N-terminal domain|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF02678|PF05726|PIRSF006232|SSF51182 AFA_11430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR027450|IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like|Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily G3DSA:2.60.120.590|PF13532|SSF51197 AFA_11435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001110|IPR003010|IPR036526 Carbon-nitrogen hydrolase|Carbon-nitrogen hydrolase superfamily|Uncharacterised protein family UPF0012, conserved site GO:0006807 G3DSA:3.60.110.10|PF00795|PS01227|SSF56317 AFA_11440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_11445 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_11450 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003313|IPR009057|IPR011051|IPR014710|IPR018060 AraC-type arabinose-binding/dimerisation domain|DNA binding HTH domain, AraC-type|Homeobox-like domain superfamily|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:2.60.120.10|PF02311|PF12833|SM00342|SSF46689|SSF51182 AFA_11455 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 PF03594|TIGR00843 AFA_11460 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021553 Protein of unknwon function DUF3008 PF11450 AFA_11465 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005501|IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel|UPF0271 family, LamB/YcsF/PxpA GO:0003824|GO:0005975 G3DSA:3.20.20.370|MF_00691|PF03746|SSF88713 AFA_11470 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 AFA_11475 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002346|IPR002888|IPR005107|IPR006058|IPR012175|IPR012675|IPR014307|IPR016167|IPR016169|IPR036010|IPR036318|IPR036683|IPR036884 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|Beta-grasp domain superfamily|CO dehydrogenase flavoprotein, C-terminal|CO dehydrogenase flavoprotein, C-terminal domain superfamily|FAD-binding, type PCMH, subdomain 1|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|Molybdopterin dehydrogenase, FAD-binding|Xanthine dehydrogenase, small subunit|Xanthine dehydrogenase, small subunit, bacteria|[2Fe-2S]-binding|[2Fe-2S]-binding domain superfamily GO:0004854|GO:0004855|GO:0009055|GO:0016491|GO:0046872|GO:0050660|GO:0051536|GO:0051537|GO:0055114 G3DSA:1.10.150.120|G3DSA:3.10.20.30|G3DSA:3.30.390.50|G3DSA:3.30.43.10|G3DSA:3.30.465.10|PF00941|PF01799|PF03450|PIRSF036557|PS00197|SM01092|SSF47741|SSF54292|SSF55447|SSF56176|TIGR02963 AFA_11480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000674|IPR008274|IPR014309|IPR036856|IPR037165 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead|Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily|Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding|Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily|Xanthine dehydrogenase, molybdopterin binding subunit GO:0016491|GO:0030151|GO:0055114 G3DSA:3.30.365.10|G3DSA:3.90.1170.50|PF01315|PF02738|SM01008|SSF54665|SSF56003|TIGR02965 AFA_11485 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003777|IPR014308|IPR027051 Xanthine dehydrogenase accessory protein XdhC|XdhC Rossmann domain|XdhC- CoxI G3DSA:3.40.50.720|PF02625|PF13478|TIGR02964 AFA_11490 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006680|IPR011059|IPR014311|IPR032466 Amidohydrolase-related|Guanine deaminase|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain superfamily GO:0006147|GO:0008270|GO:0008892|GO:0016787|GO:0016810 G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF01979|SSF51338|SSF51556|TIGR02967 AFA_11495 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007318 Phospholipid methyltransferase G3DSA:1.20.120.1630|PF04191 AFA_11500 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.12740|PF00072|PF00486|SM00448|SM00862|SSF52172 AFA_11505 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF02518|SM00387|SSF47384|SSF55874 AFA_11510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000943|IPR007127|IPR007624|IPR007627|IPR007630|IPR007631|IPR009042|IPR012760|IPR013324|IPR013325|IPR014284|IPR028630|IPR036388 RNA polymerase sigma factor 70, non-essential domain|RNA polymerase sigma factor 70, region 1.1|RNA polymerase sigma factor RpoD|RNA polymerase sigma factor RpoD, C-terminal|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 1.2|RNA polymerase sigma-70 region 2|RNA polymerase sigma-70 region 3|RNA polymerase sigma-70 region 4|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.220.120|G3DSA:1.10.601.10|MF_00963|PF00140|PF03979|PF04539|PF04542|PF04545|PF04546|PR00046|PS00715|PS00716|SSF88659|SSF88946|TIGR02393|TIGR02937 AFA_11515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002694|IPR006171|IPR006295|IPR013173|IPR013264|IPR019475|IPR030846|IPR036977|IPR037068 DNA Primase, CHC2-type zinc finger|DNA primase DnaG, DnaB-binding domain|DNA primase DnaG, bacteria|DNA primase, DnaB-helicase binding domain|DNA primase, DnaG|DNA primase, catalytic core, N-terminal|DNA primase, catalytic core, N-terminal domain superfamily|TOPRIM domain|Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0006269|GO:0008270|GO:0016779 G3DSA:3.40.1360.10|G3DSA:3.90.580.10|G3DSA:3.90.980.10|MF_00974|PF01807|PF08275|PF08278|PF10410|PF13662|PIRSF002811|SM00400|SM00493|SM00766|SSF117023|SSF56731|SSF57783|TIGR01391 AFA_11520 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001911|IPR018278|IPR038380 Ribosomal protein S21|Ribosomal protein S21 superfamily|Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.20.5.1150|MF_00358|PD005521|PF01165|PR00976|PS01181|TIGR00030 AFA_11525 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000836|IPR029057 Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0009116 G3DSA:3.40.50.2020|PF00156|SSF53271 AFA_11530 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001114|IPR018220|IPR027417|IPR033128 Adenylosuccinate synthase, active site|Adenylosuccinate synthase, GTP-binding site|Adenylosuccinate synthetase|P-loop containing nucleoside triphosphate hydrolase GO:0004019|GO:0005525|GO:0006164 G3DSA:1.10.300.10|G3DSA:3.40.440.10|G3DSA:3.90.170.10|MF_00011|PF00709|PS00513|PS01266|SM00788|SSF52540|TIGR00184 AFA_11535 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004516|IPR004517 ATP phosphoribosyltransferase regulatory subunit|Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 G3DSA:3.30.930.10|MF_00125|PF13393|PIRSF001549|SSF55681 AFA_11540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001107|IPR010200|IPR036013 Band 7 domain|Band 7/SPFH domain superfamily|HflC GO:0016021|GO:0052547 G3DSA:3.30.479.30|PF01145|PIRSF005651|SM00244|SSF117892|TIGR01932 AFA_11545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001107|IPR010201|IPR020980|IPR036013 Band 7 domain|Band 7/SPFH domain superfamily|HflK|Menbrane protein HflK, N-terminal GO:0016021 G3DSA:3.30.479.30|PF01145|PF12221|SM00244|SSF117892|TIGR01933 AFA_11550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006073|IPR016496|IPR025121|IPR027417|IPR032305 GTP binding domain|GTP-binding protein, middle domain|GTPase HflX|GTPase HflX, N-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005525 G3DSA:3.40.50.11060|G3DSA:3.40.50.300|MF_00900|PF01926|PF13167|PF16360|PIRSF006809|PR00326|SSF52540|TIGR03156 AFA_11555 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005001|IPR010920 LSM domain superfamily|RNA-binding protein Hfq GO:0003723|GO:0006355 G3DSA:2.30.30.100|MF_00436|PF17209|SSF50182|TIGR02383 AFA_11560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001917|IPR004839|IPR005861|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Aminotransferase, class-II, pyridoxal-phosphate binding site|Histidinol-phosphate aminotransferase family|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0000105|GO:0003824|GO:0004400|GO:0009058|GO:0016740|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_01023|PF00155|PS00599|SSF53383|TIGR01141 AFA_11565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005225|IPR006073|IPR015946|IPR016484|IPR027417|IPR032859 GTP binding domain|GTP-binding protein EngA|GTPase Der, C-terminal KH-domain-like|K homology domain-like, alpha/beta|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain GO:0005525 G3DSA:3.30.300.20|G3DSA:3.40.50.300|MF_00195|PF01926|PF14714|PIRSF006485|PR00326|SSF52540|TIGR00231|TIGR03594 AFA_11570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002372|IPR011047|IPR015943|IPR017687|IPR018391 Outer membrane protein assembly factor BamB|Pyrrolo-quinoline quinone beta-propeller repeat|Pyrrolo-quinoline quinone repeat|Quinoprotein alcohol dehydrogenase-like superfamily|WD40/YVTN repeat-like-containing domain superfamily GO:0005515 G3DSA:2.130.10.10|MF_00923|PF13360|SM00564|SSF50998|TIGR03300 AFA_11575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011990|IPR018704|IPR026039 Tetratricopeptide repeat-like domain|Tetratricopeptide-like helical domain superfamily|Uncharacterised protein family UPF0070 GO:0005515 G3DSA:1.25.40.10|PF09976|PIRSF006170|SSF48452 AFA_11580 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004154|IPR004516|IPR015807|IPR036621 Anticodon-binding|Anticodon-binding domain superfamily|Histidine-tRNA ligase|Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0004821|GO:0005524|GO:0005737|GO:0006427 G3DSA:3.30.930.10|G3DSA:3.40.50.800|MF_00127|PF03129|PF13393|PIRSF001549|SSF52954|SSF55681|TIGR00442 AFA_11585 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004588|IPR011005|IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial|4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type|Dihydropteroate synthase-like GO:0005506|GO:0008299|GO:0016114|GO:0044237|GO:0046429|GO:0055114 G3DSA:3.20.20.20|G3DSA:3.30.413.10|MF_00159|PF04551|PIRSF004640|SSF56014|TIGR00612 AFA_11590 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:1.10.260.40|PF13413 AFA_11595 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004383|IPR007197|IPR013785|IPR027492 Aldolase-type TIM barrel|Dual-specificity RNA methyltransferase RlmN|Radical SAM|Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0003824|GO:0005737|GO:0006364|GO:0008173|GO:0030488|GO:0051536|GO:0070475 G3DSA:1.10.150.530|G3DSA:3.20.20.70|MF_01849|PF04055|PIRSF006004|SSF102114|TIGR00048 AFA_11600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001564|IPR023005|IPR034907|IPR036850 Nucleoside diphosphate kinase|Nucleoside diphosphate kinase, active site|Nucleoside diphosphate kinase-like domain|Nucleoside diphosphate kinase-like domain superfamily GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 G3DSA:3.30.70.141|MF_00451|PF00334|PR01243|PS00469|SM00562|SSF54919 AFA_11605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001412|IPR002300|IPR002303|IPR009008|IPR009080|IPR010978|IPR013155|IPR014729|IPR019499|IPR037118 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm|Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding|Rossmann-like alpha/beta/alpha sandwich fold|Valine-tRNA ligase|Valyl-tRNA synthetase, tRNA-binding arm|Valyl-tRNA synthetase, tRNA-binding arm superfamily|Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0000166|GO:0002161|GO:0004812|GO:0004832|GO:0005524|GO:0005737|GO:0006418|GO:0006438 G3DSA:1.10.287.380|G3DSA:1.10.730.10|G3DSA:3.40.50.620|G3DSA:3.90.740.10|MF_02004|PF00133|PF08264|PF10458|PR00986|PS00178|SSF46589|SSF47323|SSF50677|SSF52374|TIGR00422 AFA_11610 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025714|IPR029063 Methyltransferase domain|S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF13847|SSF53335 AFA_11615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002649|IPR016009|IPR023148|IPR029026|IPR029028 Alpha/beta knot methyltransferases|tRNA (guanine-N1-)-methyltransferase, C-terminal|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA (guanine-N1-)-methyltransferase, bacteria|tRNA methyltransferase TRMD/TRM10-type domain GO:0008033|GO:0052906 G3DSA:1.10.1270.20|G3DSA:3.40.1280.10|MF_00605|PF01746|PIRSF000386|SSF75217|TIGR00088 AFA_11620 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002676|IPR009000|IPR011033|IPR011961|IPR036976 16S rRNA processing protein RimM|PRC-barrel-like superfamily|RimM, N-terminal|RimM, N-terminal domain superfamily|Translation protein, beta-barrel domain superfamily GO:0005840|GO:0006364|GO:0043022 G3DSA:2.30.30.240|G3DSA:2.40.30.60|MF_00014|PF01782|SSF50346|SSF50447|TIGR02273 AFA_11625 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000307|IPR023803 Ribosomal protein S16|Ribosomal protein S16 domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.1320.10|MF_00385|PF00886|SSF54565|TIGR00002 AFA_11630 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001455|IPR036868 TusA-like domain|TusA-like domain superfamily G3DSA:3.30.110.40|PF01206|PS01148|SSF64307 AFA_11635 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002318|IPR003156|IPR009000|IPR012947|IPR018162|IPR018163|IPR018164|IPR023033 Alanine-tRNA ligase, class IIc|Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily|Alanine-tRNA ligase, eukaryota/bacteria|Alanyl-tRNA synthetase, class IIc, N-terminal|DHHA1 domain|Threonyl/alanyl tRNA synthetase, SAD|Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily|Translation protein, beta-barrel domain superfamily GO:0000166|GO:0003676|GO:0004812|GO:0004813|GO:0005524|GO:0005737|GO:0006419|GO:0043039 G3DSA:2.40.30.130|G3DSA:3.10.310.40|G3DSA:3.30.54.20|G3DSA:3.30.930.10|G3DSA:3.30.980.10|MF_00036_B|PF01411|PF02272|PF07973|PR00980|SM00863|SSF101353|SSF50447|SSF55186|SSF55681|TIGR00344 AFA_11640 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002509|IPR011330|IPR017625 Glycoside hydrolase/deacetylase, beta/alpha-barrel|NodB homology domain|PuuE allantoinase/chitin deacetylase 1 GO:0003824|GO:0005975|GO:0016810 G3DSA:3.20.20.370|PF01522|SSF88713|TIGR03212 AFA_11645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|SM00345|SM00895|SSF46785|SSF48008 AFA_11650 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014306|IPR023416|IPR023418|IPR036817 Hydroxyisourate hydrolase|Transthyretin, thyroxine binding site|Transthyretin/hydroxyisourate hydrolase domain|Transthyretin/hydroxyisourate hydrolase domain superfamily GO:0006144|GO:0033971 G3DSA:2.60.40.180|PF00576|PS00768|SSF49472|TIGR02962 AFA_11655 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010389|IPR036909 Cytochrome c-like domain superfamily|Urate oxidase N-terminal GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF06181|SSF46626 AFA_11670 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010258|IPR018927|IPR038161 Conjugal transfer, TrbG/VirB9/CagX|Toxin co-regulated pilus biosynthesis protein Q, C-terminal|VirB9/CagX/TrbG, C-terminal domain superfamily G3DSA:2.60.40.2500|PF03524|PF10671 AFA_11675 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006059 Bacterial extracellular solute-binding protein G3DSA:3.40.190.10|PF13416|SSF53850 AFA_11680 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006076|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905|SSF54373 AFA_11685 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001041|IPR001221|IPR001433|IPR001709|IPR006058|IPR008333|IPR012675|IPR017938|IPR036010|IPR039261 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Flavoprotein pyridine nucleotide cytochrome reductase|Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain|Oxidoreductase FAD/NAD(P)-binding|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel GO:0009055|GO:0016491|GO:0051536|GO:0051537|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00111|PF00175|PF00970|PR00371|PR00410|PS00197|SSF52343|SSF54292|SSF63380 AFA_11690 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002205|IPR005742|IPR006691|IPR013757|IPR013758|IPR013760|IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal|DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat|DNA topoisomerase IV, subunit A, Gram-negative|DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta|DNA topoisomerase, type IIA, subunit A/C-terminal|DNA topoisomerase, type IIA-like domain superfamily|Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003916|GO:0003918|GO:0005524|GO:0005694|GO:0006259|GO:0006265 G3DSA:1.10.268.10|G3DSA:2.120.10.90|G3DSA:3.30.1360.40|G3DSA:3.90.199.10|MF_00936|PF00521|PF03989|SM00434|SSF101904|SSF56719|TIGR01062 AFA_11695 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001241|IPR002288|IPR003594|IPR005737|IPR006171|IPR013506|IPR013759|IPR013760|IPR014721|IPR018522|IPR020568|IPR036890 DNA gyrase B subunit, C-terminal|DNA topoisomerase IV, subunit B, Gram-negative|DNA topoisomerase, type IIA|DNA topoisomerase, type IIA, conserved site|DNA topoisomerase, type IIA, subunit B, C-terminal|DNA topoisomerase, type IIA, subunit B, domain 2|DNA topoisomerase, type IIA-like domain superfamily|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|TOPRIM domain GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 G3DSA:3.30.230.10|G3DSA:3.30.565.10|G3DSA:3.40.50.670|MF_00938|PF00204|PF00986|PF01751|PF02518|PR00418|PR01098|PS00177|SM00387|SM00433|SSF54211|SSF55874|SSF56719 AFA_11700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005746|IPR013766|IPR017937|IPR036249 Thioredoxin|Thioredoxin domain|Thioredoxin, conserved site|Thioredoxin-like superfamily GO:0006662|GO:0015035|GO:0045454 G3DSA:3.40.30.10|PF00085|PIRSF000077|PR00421|PS00194|SSF52833|TIGR01068 AFA_11705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000194|IPR003593|IPR004665|IPR011112|IPR011113|IPR011129|IPR012340|IPR027417|IPR036269 AAA+ ATPase domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|Cold shock domain|Nucleic acid-binding, OB-fold|P-loop containing nucleoside triphosphate hydrolase|Rho termination factor, N-terminal|Rho termination factor, N-terminal domain superfamily|Rho termination factor, RNA-binding domain|Transcription termination factor Rho GO:0003676|GO:0003723|GO:0005524|GO:0006353|GO:0008186 G3DSA:1.10.720.10|G3DSA:2.40.50.140|G3DSA:3.40.50.300|MF_01884|PF00006|PF07497|PF07498|SM00357|SM00382|SM00959|SSF50249|SSF52540|SSF68912|TIGR00767 AFA_11710 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006095|IPR006096|IPR006097|IPR014362|IPR033524|IPR036291 Glutamate dehydrogenase|Glutamate/phenylalanine/leucine/valine dehydrogenase|Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal|Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain|Leu/Phe/Val dehydrogenases active site|NAD(P)-binding domain superfamily GO:0006520|GO:0016491|GO:0016639|GO:0055114 G3DSA:1.10.285.10|G3DSA:3.40.50.10860|G3DSA:3.40.50.720|PF00208|PF02812|PIRSF000185|PR00082|PS00074|SM00839|SSF51735|SSF53223 AFA_11715 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000871|IPR012338|IPR023650 Beta-lactamase, class-A|Beta-lactamase, class-A active site|Beta-lactamase/transpeptidase-like GO:0008800|GO:0030655|GO:0046677 G3DSA:3.40.710.10|PF13354|PR00118|PS00146|SSF56601 AFA_11720 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007844|IPR011836|IPR025263|IPR032712 AsmA|AsmA-like, C-terminal|Conserved hypothetical protein CHP02099|Domain of unknown function DUF3971 PF05170|PF13116|PF13502|TIGR02099 AFA_11725 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005190|IPR013546|IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme|Glutamate-ammonia ligase adenylyltransferase, repeated domain|PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0008882|GO:0016779 G3DSA:1.20.120.1510|G3DSA:1.20.120.330|G3DSA:3.30.460.100|MF_00802|PF03710|PF08335|SSF81301|SSF81593 AFA_11730 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003828 Epoxyqueuosine reductase QueH MF_02089|PF02677 AFA_11735 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001270|IPR003593|IPR003959|IPR004176|IPR017730|IPR018368|IPR019489|IPR027417|IPR028299|IPR036628 AAA+ ATPase domain|ATPase, AAA-type, core|Chaperonin ClpB|Clp ATPase, C-terminal|Clp, N-terminal|Clp, N-terminal domain superfamily|ClpA/B family|ClpA/B, conserved site 1|ClpA/B, conserved site 2|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0005737|GO:0009408|GO:0019538|GO:0042026 G3DSA:1.10.1780.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00004|PF02861|PF07724|PF10431|PR00300|PS00870|PS00871|SM00382|SM01086|SSF52540|SSF81923|TIGR03346 AFA_11740 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000595|IPR012318|IPR014710|IPR018335|IPR018490|IPR036388|IPR036390 Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Transcription regulator HTH, Crp-type, conserved site|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0005622|GO:0006355 G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|PR00034|PS00042|SM00100|SM00419|SSF46785|SSF51206 AFA_11750 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008620 Nitrogen fixation protein FixH PF05751 AFA_11755 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013783|IPR014116|IPR017896|IPR017900|IPR032879 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Cytochrome c oxidase cbb3 type, accessory protein FixG|FixG, C-terminal immunoglobulin-like domain|Immunoglobulin-like fold GO:0016021|GO:0055114 G3DSA:2.60.40.10|PF11614|PF12801|PF13746|PS00198|SSF54862|TIGR02745 AFA_11760 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004678|IPR009056|IPR032858|IPR036909|IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal|Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily|Cytochrome c oxidase cbb3-type, subunit III|Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|G3DSA:1.20.58.1490|PF13442|PF14715|PIRSF000006|SSF46626|TIGR00782 AFA_11765 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008621 Cbb3-type cytochrome oxidase component PF05545 AFA_11770 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003468|IPR036909 Cytochrome c oxidase, monohaem subunit/FixO|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF02433|SSF46626|TIGR00781 AFA_11775 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000883|IPR004677|IPR023615|IPR036927 Cytochrome c oxidase cbb3-type, subunit I|Cytochrome c oxidase subunit I|Cytochrome c oxidase, subunit I, copper-binding site|Cytochrome c oxidase-like, subunit I superfamily GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0045278|GO:0055114 G3DSA:1.20.210.10|PF00115|PS00077|SSF81442|TIGR00780 AFA_11780 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004714 Cytochrome oxidase maturation protein cbb3-type PF03597|TIGR00847 AFA_11785 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR036412 HAD-like superfamily PF00122|SSF56784 AFA_11795 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006254|IPR015813|IPR018523 Isocitrate lyase|Isocitrate lyase/phosphorylmutase, conserved site|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824|GO:0004451|GO:0019752 G3DSA:3.20.20.60|PF00463|PIRSF001362|PS00161|SSF51621|TIGR01346 AFA_11800 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016428|IPR029139|IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF|NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal|NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0033739|GO:0046857|GO:0055114 G3DSA:3.30.1130.10|MF_00817|PF14489|PF14819|PIRSF004750|SSF55620|TIGR03138 AFA_11805 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_11810 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000462|IPR004570 CDP-alcohol phosphatidyltransferase|CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016020|GO:0016021|GO:0016780 G3DSA:1.20.120.1760|PF01066|PIRSF000847|PS00379|TIGR00560 AFA_11815 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000305|IPR001162|IPR001943|IPR003583|IPR004791|IPR010994|IPR035901|IPR036876|IPR038476 GIY-YIG endonuclease|GIY-YIG endonuclease superfamily|Helix-hairpin-helix DNA-binding motif, class 1|RuvA domain 2-like|UVR domain|UVR domain superfamily|UvrABC system, subunit C|UvrC family homology region|UvrC homology region 2 superfamily GO:0003677|GO:0005515|GO:0006281|GO:0006289|GO:0009380|GO:0009381 G3DSA:1.10.150.20|G3DSA:3.30.420.340|G3DSA:3.40.1440.10|G3DSA:4.10.860.10|MF_00203|PF01541|PF02151|PF08459|PF14520|SM00278|SM00465|SSF46600|SSF47781|SSF82771|TIGR00194 AFA_11820 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001764|IPR017853|IPR022956|IPR036962 Beta-hexosaminidase, bacterial|Glycoside hydrolase superfamily|Glycoside hydrolase, family 3, N-terminal|Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0004563|GO:0005975 G3DSA:3.20.20.300|MF_00364|PF00933|SSF51445 AFA_11825 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002582|IPR004568|IPR008278|IPR037143 4'-phosphopantetheinyl transferase domain|4'-phosphopantetheinyl transferase domain superfamily|Holo-[acyl carrier protein] synthase|Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 G3DSA:3.90.470.20|MF_00101|PD004282|PF01648|SSF56214|TIGR00516|TIGR00556 AFA_11830 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR011880|IPR028154 AMP-dependent ligase, C-terminal|AMP-dependent synthetase/ligase|Phenylacetate-CoA ligase GO:0003824|GO:0010124|GO:0047475 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|PF00501|PF14535|PIRSF006444|SSF56801|TIGR02155 AFA_11835 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003736|IPR006683|IPR011973|IPR029069 HotDog domain superfamily|Phenylacetic acid degradation protein PaaD|Phenylacetic acid degradation-related domain|Thioesterase domain GO:0016790 G3DSA:3.10.129.10|PF03061|SSF54637|TIGR00369|TIGR02286 AFA_11840 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001753|IPR011968|IPR014748|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase|Phenylacetate degradation probable enoyl-CoA hydratase PaaB GO:0003824|GO:0010124 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|SSF52096|TIGR02280 AFA_11845 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011975|IPR015590|IPR016161|IPR016162|IPR016163 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde/histidinol dehydrogenase|Phenylacetic acid degradation protein PaaN2 GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|SSF53720|TIGR02288 AFA_11850 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001041|IPR001433|IPR001834|IPR006058|IPR008333|IPR011884|IPR012675|IPR017938|IPR036010|IPR039261 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain|NADH:cytochrome b5 reductase (CBR)|Oxidoreductase FAD/NAD(P)-binding|Phenylacetate-CoA oxygenase/reductase, PaaK subunit|Riboflavin synthase-like beta-barrel GO:0009055|GO:0010124|GO:0016491|GO:0051536|GO:0051537|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00111|PF00175|PF00970|PR00406|PS00197|SSF52343|SSF54292|SSF63380|TIGR02160 AFA_11855 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002744|IPR011883|IPR034904 Fe-S cluster assembly domain superfamily|MIP18 family-like|Phenylacetate-CoA oxygenase, PaaJ subunit G3DSA:3.30.300.130|PF01883|SSF117916|TIGR02159 AFA_11860 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007814|IPR009078|IPR011882|IPR012347 1,2-phenylacetyl-CoA epoxidase, subunit A/C|1,2-phenylacetyl-CoA epoxidase, subunit C|Ferritin-like|Ferritin-like superfamily GO:0010124 G3DSA:1.20.1260.10|PF05138|PIRSF037834|SSF47240|TIGR02158 AFA_11865 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009359|IPR038693 Phenylacetic acid degradation B|Phenylacetyl-CoA epoxidase, subunit B G3DSA:3.10.20.520|PF06243|PIRSF030200|TIGR02157 AFA_11870 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007814|IPR009078|IPR011881|IPR012347 1,2-phenylacetyl-CoA epoxidase, subunit A|1,2-phenylacetyl-CoA epoxidase, subunit A/C|Ferritin-like|Ferritin-like superfamily GO:0010124|GO:0097266 G3DSA:1.20.1260.10|PF05138|SSF47240|TIGR02156 AFA_11875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012337|IPR013520|IPR022894|IPR036397 Exonuclease, RNase T/DNA polymerase III|Oligoribonuclease|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0000175|GO:0003676 G3DSA:3.30.420.10|MF_00045|PF00929|SM00479|SSF53098 AFA_11880 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001915|IPR032456 CAAX prenyl protease 1, N-terminal|Peptidase M48 GO:0004222|GO:0006508 G3DSA:3.30.2010.10|PF01435|PF16491 AFA_11885 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004881|IPR010914|IPR012340|IPR027417 Nucleic acid-binding, OB-fold|P-loop containing nucleoside triphosphate hydrolase|Ribosome biogenesis GTPase RsgA|RsgA GTPase domain GO:0003924|GO:0005525 G3DSA:1.10.40.50|G3DSA:2.40.50.140|G3DSA:3.40.50.300|MF_01820|PF03193|SSF50249|SSF52540|TIGR00157 AFA_11890 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000086|IPR015797 NUDIX hydrolase domain|NUDIX hydrolase-like domain superfamily GO:0016787 G3DSA:3.90.79.10|PF00293|SSF55811 AFA_11895 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001857|IPR008991|IPR018257|IPR038657 Ribosomal protein L19|Ribosomal protein L19 superfamily|Ribosomal protein L19, conserved site|Translation protein SH3-like domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.30.30.790|MF_00402|PF01245|PIRSF002191|PR00061|PS01015|SSF50104|TIGR01024 AFA_11910 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000866|IPR019479|IPR024706|IPR036249 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant|Peroxiredoxin, AhpC-type|Peroxiredoxin, C-terminal|Thioredoxin-like superfamily GO:0016209|GO:0016491|GO:0051920|GO:0055114 G3DSA:3.30.1020.10|G3DSA:3.40.30.10|PF00578|PF10417|PIRSF000239|SSF52833 AFA_11915 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR020953|IPR025878|IPR036250|IPR037069 Acetyl-CoA dehydrogenase-like C-terminal domain|Acyl-CoA dehydrogenase, N-terminal, bacteria|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PF12418|PF12806|SSF47203|SSF56645 AFA_11920 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001308|IPR014729|IPR014730|IPR014731|IPR018206|IPR029035 DHS-like NAD/FAD-binding domain superfamily|Electron transfer flavoprotein alpha subunit/FixB|Electron transfer flavoprotein subunit alpha, conserved site|Electron transfer flavoprotein, alpha subunit, C-terminal|Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold GO:0009055|GO:0050660 G3DSA:3.40.50.1220|G3DSA:3.40.50.620|PF00766|PF01012|PIRSF000089|PS00696|SM00893|SSF52402|SSF52467 AFA_11925 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000049|IPR012255|IPR014729|IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Electron transfer flavoprotein, beta subunit|Electron transfer flavoprotein, beta-subunit, conserved site|Rossmann-like alpha/beta/alpha sandwich fold GO:0009055 G3DSA:3.40.50.620|PF01012|PIRSF000090|PS01065|SM00893|SSF52402 AFA_11930 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000286|IPR023696|IPR023801|IPR037138 Histone deacetylase domain|Histone deacetylase domain superfamily|Histone deacetylase family|Ureohydrolase domain superfamily G3DSA:3.40.800.20|PF00850|PR01270|SSF52768 AFA_11935 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011757|IPR023346|IPR031304 Lysozyme-like domain superfamily|Lytic transglycosylase MltB|Transglycosylase SLT domain 2 G3DSA:1.10.530.10|G3DSA:1.10.8.350|PF13406|SSF53955|TIGR02282 AFA_11940 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001216|IPR001926|IPR005856|IPR005858|IPR036052 Cysteine synthase|Cysteine synthase CysM|Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site|Pyridoxal-phosphate dependent enzyme|Tryptophan synthase beta subunit-like PLP-dependent enzyme GO:0004124|GO:0006535 G3DSA:3.40.50.1100|PF00291|PS00901|SSF53686|TIGR01136|TIGR01138 AFA_11945 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003583|IPR010994 Helix-hairpin-helix DNA-binding motif, class 1|RuvA domain 2-like GO:0003677|GO:0006281 G3DSA:1.10.150.280|PF12836|SM00278|SSF47781 AFA_11950 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001509|IPR011912|IPR036291 ADP-L-glycero-D-manno-heptose-6-epimerase|NAD(P)-binding domain superfamily|NAD-dependent epimerase/dehydratase GO:0003824|GO:0005975|GO:0008712|GO:0050661|GO:0050662 G3DSA:3.40.50.720|G3DSA:3.90.25.10|MF_01601|PF01370|SSF51735|TIGR02197 AFA_11955 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002173|IPR011611|IPR011913|IPR029056 Carbohydrate kinase PfkB|Carbohydrate/puine kinase, PfkB, conserved site|RfaE bifunctional protein, domain I|Ribokinase-like GO:0005975|GO:0016773|GO:0016779 G3DSA:3.40.1190.20|PF00294|PS00583|SSF53613|TIGR02198 AFA_11960 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011990|IPR030865 Lipopolysaccharide assembly protein B|Tetratricopeptide-like helical domain superfamily GO:0005515|GO:0008653 G3DSA:1.25.40.10|MF_00994|SSF48452 AFA_11965 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 PF06305 AFA_11970 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000119|IPR005685|IPR010992 Histone-like DNA-binding protein|Integration host factor (IHF)-like DNA-binding domain superfamily|Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 G3DSA:4.10.520.10|PF00216|PR01727|SM00411|SSF47729|TIGR00988 AFA_11975 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000110|IPR003029|IPR012340|IPR022967 Nucleic acid-binding, OB-fold|RNA-binding domain, S1|Ribosomal protein S1|S1 domain GO:0003676|GO:0003723|GO:0003735|GO:0005840|GO:0006412 G3DSA:2.40.50.140|PF00575|PIRSF002111|PR00681|SM00316|SSF50249|TIGR00717 AFA_11980 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003136|IPR011994|IPR027417 Cytidylate kinase|Cytidylate kinase domain|P-loop containing nucleoside triphosphate hydrolase GO:0004127|GO:0005524|GO:0006139 G3DSA:3.40.50.300|MF_00238|PF02224|SSF52540|TIGR00017 AFA_11985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001986|IPR006264|IPR013792|IPR023193|IPR036968 3-phosphoshikimate 1-carboxyvinyltransferase|3-phosphoshikimate 1-carboxyvinyltransferase, conserved site|Enolpyruvate transferase domain|Enolpyruvate transferase domain superfamily|RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824|GO:0003866|GO:0009073|GO:0016765 G3DSA:3.65.10.10|MF_00210|PF00275|PIRSF000505|PS00104|PS00885|SSF55205|TIGR01356 AFA_11990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003099|IPR008927|IPR036291 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily|Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 G3DSA:1.10.3660.10|G3DSA:3.40.50.720|PF02153|SSF48179|SSF51735 AFA_11995 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001086|IPR002701|IPR002912|IPR008242|IPR010957|IPR018528|IPR036263|IPR036979 ACT domain|Bifunctional P-protein, chorismate mutase/prephenate dehydratase|Chorismate mutase II, prokaryotic-type|Chorismate mutase domain superfamily|Chorismate mutase type II superfamily|Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain|Prephenate dehydratase|Prephenate dehydratase, conserved site GO:0004106|GO:0004664|GO:0005737|GO:0009094|GO:0046417 G3DSA:1.20.59.10|G3DSA:3.30.70.260|G3DSA:3.40.190.10|PF00800|PF01817|PF01842|PIRSF001500|PS00858|SM00830|SSF48600|SSF53850|SSF55021|TIGR01807 AFA_12000 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000192|IPR015421|IPR015422|IPR015424|IPR022278 Aminotransferase class V domain|Phosphoserine aminotransferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0004648|GO:0006564 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00160|PF00266|PIRSF000525|SSF53383|TIGR01364 AFA_12005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002205|IPR005743|IPR006691|IPR013757|IPR013758|IPR013760|IPR035516 DNA gyrase, subunit A|DNA gyrase/topoisomerase IV, subunit A, C-terminal|DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat|DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta|DNA topoisomerase, type IIA, subunit A/C-terminal|DNA topoisomerase, type IIA-like domain superfamily|Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003916|GO:0003918|GO:0005524|GO:0005694|GO:0006259|GO:0006265 G3DSA:1.10.268.10|G3DSA:2.120.10.90|G3DSA:3.30.1360.40|G3DSA:3.90.199.10|MF_01897|PF00521|PF03989|SM00434|SSF101904|SSF56719|TIGR01063 AFA_12010 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006664|IPR006665|IPR036737 OmpA-like domain|OmpA-like domain superfamily|Outer membrane protein, bacterial GO:0009279|GO:0016021 G3DSA:3.30.1330.60|PF00691|PR01021|PR01023|SSF103088 AFA_12015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010233|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 G3DSA:3.40.50.150|MF_00472|PF13489|SSF53335|TIGR01983 AFA_12020 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006346|IPR006439|IPR023198|IPR023214|IPR036412 2-phosphoglycolate phosphatase-like, prokaryotic|HAD hydrolase, subfamily IA|HAD superfamily|HAD-like superfamily|Phosphoglycolate phosphatase-like, domain 2 GO:0016787|GO:0016791 G3DSA:1.10.150.240|G3DSA:3.40.50.1000|PF13419|SSF56784|TIGR01449|TIGR01509|TIGR01549 AFA_12025 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_12035 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000813|IPR017896|IPR017900|IPR022569 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|7Fe ferredoxin|Ferredoxin, C-terminal GO:0009055 G3DSA:3.30.70.20|PF00037|PF11953|PR00354|PS00198|SSF54862 AFA_12040 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029055|IPR029132 Choloylglycine hydrolase/NAAA C-terminal|Nucleophile aminohydrolases, N-terminal G3DSA:3.60.60.10|PF02275|SSF56235 AFA_12045 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935 AFA_12055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR036709 Autotransporter beta-domain superfamily G3DSA:2.40.160.20|SSF103515 AFA_12060 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002226|IPR010582|IPR011614|IPR018028|IPR020835|IPR024708|IPR024712|IPR029062|IPR037060 Catalase active site|Catalase core domain|Catalase core domain superfamily|Catalase haem-binding site|Catalase immune-responsive domain|Catalase superfamily|Catalase, mono-functional, haem-containing|Catalase, mono-functional, haem-containing, clade 2|Class I glutamine amidotransferase-like GO:0004096|GO:0006979|GO:0020037|GO:0055114 G3DSA:1.20.1370.20|G3DSA:2.40.180.10|G3DSA:3.40.50.880|PF00199|PF06628|PIRSF038927|PR00067|PS00437|PS00438|SM01060|SSF52317|SSF56634 AFA_12065 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004843|IPR029052 Calcineurin-like phosphoesterase domain, ApaH type|Metallo-dependent phosphatase-like GO:0016787 G3DSA:3.60.21.10|PF00149|SSF56300 AFA_12070 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014825|IPR016024 Armadillo-type fold|DNA alkylation repair enzyme G3DSA:1.25.40.290|PF08713|SSF48371 AFA_12075 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR036388|IPR036390 MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01047|PR00598|SM00347|SSF46785 AFA_12080 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|SSF53383 AFA_12085 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001647|IPR009057|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PR00455|SSF46689|SSF48498 AFA_12090 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002539|IPR029069 HotDog domain superfamily|MaoC-like dehydratase domain G3DSA:3.10.129.10|PF01575|SSF54637 AFA_12095 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF00583|SSF55729 AFA_12100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 PF01810 AFA_12105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR017685|IPR036388|IPR036390 HTH-type transcriptional regulator ArgP|LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850|TIGR03298 AFA_12110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR004839|IPR015421|IPR015424|IPR036388|IPR036390 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major domain|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0003824|GO:0006355|GO:0009058|GO:0030170 G3DSA:1.10.10.10|G3DSA:3.40.640.10|PF00155|PF00392|PR00035|SM00345|SSF46785|SSF53383 AFA_12115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007396|IPR012349 FMN-binding split barrel|Transcriptional regulator PAI 2-type GO:0048037 G3DSA:2.30.110.10|PF04299|PIRSF010372|SSF50475 AFA_12120 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004045|IPR004046|IPR036249|IPR036282 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF02798|PF14497|SSF47616|SSF52833 AFA_12135 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001801|IPR027444|IPR037150 Histone-like protein H-NS|Histone-like protein H-NS, C-terminal domain|Histone-like protein H-NS, C-terminal domain superfamily GO:0003677|GO:0005622|GO:0006355 G3DSA:4.10.430.10|PF00816|SM00528|SSF81273 AFA_12140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009989 TrbM PF07424 AFA_12145 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008258|IPR023346 Lysozyme-like domain superfamily|Transglycosylase SLT domain 1 G3DSA:1.10.530.10|PF01464|SSF53955 AFA_12160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB PF05101 AFA_12165 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004346|IPR018145|IPR027417 CagE, TrbE, VirB component of type IV transporter system|CagE, TrbE, VirB component of type IV transporter system, central domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF03135|SSF52540|TIGR00929 AFA_12175 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014158|IPR023220 Type IV secretion system, VirB5|Type IV secretion system, VirB5-domain G3DSA:1.20.58.430|PF07996|SSF101082 AFA_12190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007430|IPR026264|IPR032710 Bacterial virulence protein VirB8|NTF2-like domain superfamily|Type IV secretion system protein VirB8/PtlE GO:0016020|GO:0030255 G3DSA:3.10.450.230|PF04335|PIRSF003299|SSF54427 AFA_12195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010258|IPR038161 Conjugal transfer, TrbG/VirB9/CagX|VirB9/CagX/TrbG, C-terminal domain superfamily G3DSA:2.60.40.2500|PF03524 AFA_12200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005498 Type IV secretion system, VirB10 / TraB / TrbI G3DSA:2.40.128.260|PF03743 AFA_12205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001482|IPR014155|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type II/IV secretion system protein|Type IV secretion system protein VirB11 GO:0043684|GO:0044097 G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|SSF52540|TIGR02788 AFA_12235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|SSF52540 AFA_12245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR019476|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type IV secretion system coupling protein TraD, DNA-binding domain G3DSA:1.10.8.80|G3DSA:3.40.50.300|PF10412|SSF52540 AFA_12250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014059|IPR014862|IPR027417 Conjugative relaxase, N-terminal|P-loop containing nucleoside triphosphate hydrolase|TrwC relaxase G3DSA:3.40.50.300|PF08751|PF13604|SSF52540|SSF55464|TIGR02686 AFA_12260 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR022148 CopG antitoxin PF12441 AFA_12265 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system PF04365 AFA_12270 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000424|IPR011344|IPR012340 Nucleic acid-binding, OB-fold|Primosome PriB/single-strand DNA-binding|Single-stranded DNA-binding protein GO:0003697|GO:0006260 G3DSA:2.40.50.140|MF_00984|PF00436|PIRSF002070|SSF50249|TIGR00621 AFA_12275 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004914 Antirestriction protein G3DSA:1.10.472.120|PD012854|PF03230 AFA_12295 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003115|IPR036086 ParB/Sulfiredoxin|ParB/Sulfiredoxin superfamily G3DSA:1.10.10.2830|G3DSA:3.90.1530.30|PF02195|SM00470|SSF109709|SSF110849 AFA_12300 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002052|IPR003356|IPR022749|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|DNA methylase, adenine-specific|N6 adenine-specific DNA methyltransferase, N-terminal domain|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0003677|GO:0006306|GO:0008168|GO:0008170|GO:0032259 G3DSA:3.40.50.150|PF02384|PF12161|PR00507|PS00092|SSF53335 AFA_12305 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 G3DSA:1.10.287.1120|G3DSA:3.90.220.20|PF01420|SSF116734 AFA_12310 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006935|IPR007409|IPR014001|IPR027417 Helicase superfamily 1/2, ATP-binding domain|Helicase/UvrB, N-terminal|P-loop containing nucleoside triphosphate hydrolase|Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0005524|GO:0006304|GO:0016787 G3DSA:3.40.50.300|G3DSA:3.90.1570.50|G3DSA:3.90.640.50|PF04313|PF04851|SM00487|SSF52540 AFA_12315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002560|IPR029261|IPR032877 Transposase IS204/IS1001/IS1096/IS1165, DDE domain|Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain|Transposase IS204/IS1001/IS1096/IS1165, zinc-finger PF01610|PF13542|PF14690 AFA_12320 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002513|IPR025296 Domain of unknown function DUF4158|Tn3 transposase DDE domain GO:0004803|GO:0006313 PF01526|PF13700 AFA_12325 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006118|IPR006119|IPR006120|IPR009057|IPR036162 Homeobox-like domain superfamily|Recombinase, conserved site|Resolvase, HTH domain|Resolvase, N-terminal catalytic domain|Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 G3DSA:3.40.50.1390|PF00239|PF02796|PS00397|PS00398|SM00857|SSF46689|SSF53041 AFA_12330 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003423|IPR010131 Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT GO:0015562|GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|SSF56954|TIGR01845 AFA_12335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002321|IPR010980 Cytochrome c, class II|Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 G3DSA:1.20.120.10|PF01322|SSF47175 AFA_12340 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_12345 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003838|IPR025857 ABC transporter permease protein domain|MacB-like periplasmic core domain GO:0016020 PF02687|PF12704 AFA_12350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369|TIGR01730 AFA_12355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001647|IPR009057|IPR013570|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily|Transcription regulator YsiA, C-terminal GO:0003677 G3DSA:1.10.357.10|PF00440|PF08359|SSF46689|SSF48498 AFA_12360 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000123|IPR000477 RNA-directed DNA polymerase (reverse transcriptase), msDNA|Reverse transcriptase domain GO:0003723|GO:0003964|GO:0006278 PF00078|PR00866|SSF56672 AFA_12365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002059|IPR011129|IPR012156|IPR012340|IPR019844 Cold shock domain|Cold shock, CspA|Cold-shock conserved site|Cold-shock protein, DNA-binding|Nucleic acid-binding, OB-fold GO:0003676|GO:0003677|GO:0006355 G3DSA:2.40.50.140|PF00313|PIRSF002599|PS00352|SM00357|SSF50249 AFA_12375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006073|IPR027417 GTP binding domain|P-loop containing nucleoside triphosphate hydrolase GO:0005525 G3DSA:3.40.50.300|PF01926|SSF52540 AFA_12380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010982|IPR031856 Lambda repressor-like, DNA-binding domain superfamily|Putative bacterial antitoxin YdaS GO:0003677 G3DSA:1.10.260.40|PF15943|SSF47413 AFA_12385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002104|IPR004107|IPR010998|IPR011010|IPR013762|IPR022000 DNA breaking-rejoining enzyme, catalytic core|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal|Min27-like integrase, DNA-binding domain GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|PF12167|PF14659|SSF56349 AFA_12395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001991|IPR023025|IPR036458 Serine/threonine transporter SstT|Sodium:dicarboxylate symporter|Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0015826|GO:0016021|GO:0032329 G3DSA:1.10.3860.10|MF_01582|PF00375|PR00173|SSF118215 AFA_12400 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 PF01810|PIRSF006324 AFA_12410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007710 Nucleoside 2-deoxyribosyltransferase G3DSA:3.40.50.450|PF05014|SSF52309 AFA_12415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001347|IPR009057|IPR036388 Homeobox-like domain superfamily|Sugar isomerase (SIS)|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0097367|GO:1901135 G3DSA:1.10.10.10|G3DSA:3.40.50.10490|PF01380|SSF46689|SSF53697 AFA_12420 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007436 Protein of unknown function DUF485 PF04341 AFA_12425 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001734|IPR018212|IPR038377 Sodium/glucose symporter superfamily|Sodium/solute symporter|Sodium/solute symporter, conserved site GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1730.10|PF00474|PS00456|TIGR00813 AFA_12430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000792|IPR001789|IPR011006|IPR016032|IPR036388 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172 AFA_12435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000014|IPR001789|IPR003594|IPR003661|IPR004358|IPR011006|IPR035965|IPR036097|IPR036890|IPR038377 CheY-like superfamily|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAS domain|PAS domain superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal|Signal transduction response regulator, receiver domain|Sodium/glucose symporter superfamily GO:0000155|GO:0000160|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:1.20.1730.10|G3DSA:3.30.450.20|G3DSA:3.30.565.10|G3DSA:3.40.50.2300|PF00072|PF00512|PF02518|PF12860|PR00344|SM00091|SM00387|SM00388|SM00448|SSF47384|SSF52172|SSF55785|SSF55874 AFA_12440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014729|IPR015947|IPR024951|IPR025980 ATP-sulfurylase PUA-like domain|PUA-like superfamily|Rossmann-like alpha/beta/alpha sandwich fold|Sulphate adenylyltransferase catalytic domain GO:0004781 G3DSA:3.10.400.10|G3DSA:3.40.50.620|PF01747|PF14306|SSF52374|SSF88697 AFA_12445 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_12455 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 AFA_12460 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001045|IPR003826|IPR016067|IPR029063|IPR030373|IPR037163 Polyamine biosynthesis domain, conserved site|S-adenosyl-L-methionine-dependent methyltransferase|S-adenosylmethionine decarboxylase family, prokaryotic|S-adenosylmethionine decarboxylase, core|Spermidine synthase, tetramerisation domain superfamily|Spermidine/spermine synthases GO:0003824|GO:0004014|GO:0008295 G3DSA:2.30.140.10|G3DSA:3.40.50.150|G3DSA:3.60.90.10|MF_00198|PF01564|PF02675|PS01330|SSF53335|SSF56276 AFA_12465 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR003661|IPR004358|IPR035965|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAS domain superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF02518|PR00344|SM00387|SM00388|SSF47384|SSF55785|SSF55874 AFA_12470 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR009061|IPR010093|IPR011006 CheY-like superfamily|Putative DNA-binding domain superfamily|Signal transduction response regulator, receiver domain|SinI-like, DNA-binding domain GO:0000160|GO:0003677 G3DSA:1.10.1660.10|G3DSA:3.40.50.2300|PF00072|PF12728|SM00448|SSF46955|SSF52172|TIGR01764 AFA_12475 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000014|IPR001610|IPR004089|IPR004090|IPR013655|IPR035965 Chemotaxis methyl-accepting receptor|Methyl-accepting chemotaxis protein (MCP) signalling domain|PAC motif|PAS domain|PAS domain superfamily|PAS fold-3 GO:0004888|GO:0005515|GO:0006935|GO:0007165|GO:0016020 G3DSA:1.10.287.950|G3DSA:3.30.450.20|PF00015|PF08447|PR00260|SM00086|SM00283|SSF55785|SSF58104|TIGR00229 AFA_12480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001727 Gdt1 family PF01169 AFA_12485 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR038731 Glycosyltransferase RgtA/B/C/D-like PF13231 AFA_12490 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 AFA_12495 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003680|IPR023048|IPR029039 Flavodoxin-like fold|Flavoprotein-like superfamily|NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 G3DSA:3.40.50.360|MF_01216|PF02525|SSF52218 AFA_12500 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000926|IPR032677|IPR036144 GTP cyclohydrolase II|GTP cyclohydrolase II, RibA|RibA-like superfamily GO:0003935|GO:0009231 G3DSA:3.40.50.10990|MF_00179|PF00925|SSF142695|TIGR00505 AFA_12510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011577|IPR016174 Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane GO:0009055|GO:0016020|GO:0016021|GO:0022904 G3DSA:1.20.950.20|PF01292|SSF81342 AFA_12515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004147|IPR011009 Protein kinase-like domain superfamily|UbiB domain PF03109|SSF56112 AFA_12520 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007343 Uncharacterised protein family, zinc metallopeptidase putative PF04228 AFA_12530 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002187|IPR002332|IPR011322|IPR015867|IPR017918 Nitrogen regulatory PII-like, alpha/beta|Nitrogen regulatory protein P-II, urydylation site|Nitrogen regulatory protein PII|Nitrogen regulatory protein PII, conserved site|Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal GO:0006808|GO:0030234 G3DSA:3.30.70.120|PF00543|PIRSF039144|PR00340|PS00496|PS00638|SM00938|SSF54913 AFA_12535 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001905|IPR002229|IPR018047|IPR024041|IPR029020 Ammonium transporter|Ammonium transporter AmtB-like domain|Ammonium transporter, conserved site|Ammonium/urea transporter|Blood group Rhesus C/E/D polypeptide GO:0008519|GO:0015696|GO:0016020|GO:0072488 G3DSA:1.10.3430.10|PF00909|PR00342|PS01219|SSF111352|TIGR00836 AFA_12540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002321|IPR010980|IPR012127|IPR015984 Cytochrome c prime|Cytochrome c prime, subgroup|Cytochrome c, class II|Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 G3DSA:1.20.120.10|PF01322|PIRSF000027|PR00608|SSF47175 AFA_12545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000362|IPR004769|IPR008948|IPR013539|IPR020557|IPR022761|IPR024083 Adenylosuccinate lyase|Adenylosuccinate lyase PurB, C-terminal|Fumarase/histidase, N-terminal|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like GO:0003824|GO:0004018|GO:0006188|GO:0009152 G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|PF00206|PF08328|PR00149|PS00163|SSF48557|TIGR00928 AFA_12550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004045|IPR036249|IPR036282 Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF13410|PF13417|SSF47616|SSF52833 AFA_12555 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009057|IPR018060 DNA binding HTH domain, AraC-type|Homeobox-like domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12833|SM00342|SSF46689 AFA_12560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013094|IPR029058|IPR033140 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-3|Lipase, GDXG, putative serine active site GO:0016787 G3DSA:3.40.50.1820|PF07859|PS01174|SSF53474 AFA_12565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002781 Transmembrane protein TauE-like GO:0016021 PF01925 AFA_12570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004506|IPR014729|IPR023382 Adenine nucleotide alpha hydrolase-like domains|Rossmann-like alpha/beta/alpha sandwich fold|tRNA-specific 2-thiouridylase GO:0008033|GO:0016740|GO:0016783 G3DSA:2.30.30.280|G3DSA:2.40.30.10|G3DSA:3.40.50.620|MF_00144|PF03054|SSF52402|TIGR00420 AFA_12575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004113|IPR006094|IPR016164|IPR016171|IPR036318 FAD linked oxidase, N-terminal|FAD-binding, type PCMH-like superfamily|FAD-linked oxidase, C-terminal|FAD-linked oxidase-like, C-terminal|Vanillyl-alcohol oxidase, C-terminal subdomain 2 GO:0003824|GO:0016491|GO:0050660|GO:0055114 G3DSA:1.10.45.10|G3DSA:3.30.465.40|G3DSA:3.30.70.2740|PF01565|PF02913|SSF55103|SSF56176 AFA_12580 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006218|IPR006219|IPR013785 Aldolase-type TIM barrel|DAHP synthetase I/KDSA|DHAP synthase, class 1 GO:0003824|GO:0003849|GO:0009058|GO:0009073 G3DSA:3.20.20.70|PF00793|PIRSF001361|SSF51569|TIGR00034 AFA_12585 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007423 Selenoprotein, putative PF04328 AFA_12590 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003706|IPR025299 CstA, C-terminal domain|CstA, N-terminal domain GO:0009267|GO:0016020 PF02554|PF13722 AFA_12595 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001638|IPR014337 Ectoine/Hydroxyectoine ABC transporter, substrate-binding protein EhuB|Solute-binding protein family 3/N-terminal domain of MltF GO:0033294|GO:0051470 G3DSA:3.40.190.10|PF00497|SM00062|SSF53850|TIGR02995 AFA_12600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR010065|IPR014342|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|Ectoine/hydroxyectoine ABC transporter, permease protein EhuC|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726|TIGR03004 AFA_12605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR010065|IPR014341|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|Ectoine/hydroxyectoine ABC transporter, permease protein EhuD|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726|TIGR03003 AFA_12610 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR014343|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|Ectoine/hydroxyectoine ABC transporter, ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540|TIGR03005 AFA_12615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018715 Protein of unknown function DUF2239 PF09998 AFA_12625 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008775|IPR012774 Ectoine dioxygenase|Phytanoyl-CoA dioxygenase GO:0016706|GO:0055114 G3DSA:2.60.120.620|PF05721|SSF51197|TIGR02408 AFA_12630 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010462|IPR011051|IPR014710 Ectoine synthase|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold GO:0019491|GO:0033990 G3DSA:2.60.120.10|MF_01255|PD080544|PF06339|SSF51182 AFA_12635 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004637|IPR005814|IPR012773|IPR015421|IPR015422|IPR015424 2,4-diaminobutyrate 4-transaminase|Aminotransferase class-III|Ectoine biosynthetic protein|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0008483|GO:0009058|GO:0019491|GO:0030170|GO:0047307 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00202|PIRSF000521|PS00600|SSF53383|TIGR00709|TIGR02407 AFA_12640 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR012772|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain|L-2,4-diaminobutyric acid acetyltransferase GO:0019491|GO:0033816 G3DSA:3.40.630.30|PF00583|SSF55729|TIGR02406 AFA_12645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR022689|IPR036388|IPR036390 Iron dependent repressor|MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355|GO:0046914 G3DSA:1.10.10.10|PF01047|PR00598|SM00347|SM00529|SSF46785 AFA_12655 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 AFA_12660 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002510|IPR025502|IPR035068|IPR036059 Metalloprotease TldD/PmbA|Metalloprotease TldD/PmbA superfamily|Metalloprotease TldD/PmbA, N-terminal|TldD GO:0006508|GO:0008237 G3DSA:3.30.2290.10|PF01523|PIRSF004919|SSF111283 AFA_12665 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001801|IPR027444|IPR037150 Histone-like protein H-NS|Histone-like protein H-NS, C-terminal domain|Histone-like protein H-NS, C-terminal domain superfamily GO:0003677|GO:0005622|GO:0006355 G3DSA:4.10.430.10|PF00816|SM00528|SSF81273 AFA_12670 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025411 Domain of unknown function DUF4136 PF13590 AFA_12675 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012779|IPR014782|IPR024601|IPR027268|IPR035414|IPR037144|IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily|Peptidase M1, alanyl aminopeptidase|Peptidase M1, alanyl aminopeptidase, C-terminal|Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily|Peptidase M1, alanyl aminopeptidase, Ig-like fold|Peptidase M1, membrane alanine aminopeptidase, N-terminal|Peptidase M4/M1, CTD superfamily GO:0008237|GO:0008270 G3DSA:1.10.1740.60|G3DSA:1.10.390.10|G3DSA:1.25.50.10|G3DSA:2.60.40.1730|G3DSA:2.60.40.1840|PF01433|PF11940|PF17432|PR00756|SSF55486|SSF63737|TIGR02414 AFA_12680 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000146|IPR028343|IPR033391 Fructose-1,6-bisphosphatase|Fructose-1,6-bisphosphatase class 1|Fructose-1-6-bisphosphatase class I, N-terminal GO:0005975|GO:0016791|GO:0042132 G3DSA:3.30.540.10|G3DSA:3.40.190.80|MF_01855|PF00316|PIRSF000904|PIRSF500210|PR00115|SSF56655 AFA_12685 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011032|IPR013149|IPR013154|IPR020843|IPR036291 Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|SM00829|SSF50129|SSF51735 AFA_12690 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 AFA_12695 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011829|IPR019818|IPR024084 Isocitrate/isopropylmalate dehydrogenase, conserved site|Isopropylmalate dehydrogenase-like domain|Tartrate dehydrogenase GO:0000287|GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.718.10|PF00180|PS00470|SM01329|SSF53659|TIGR02089 AFA_12700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006140|IPR029753|IPR036291 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site|NAD(P)-binding domain superfamily GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF02826|PS00671|SSF51735 AFA_12705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR027417|IPR033186 Helicase HerA-like C-terminal|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF05872|SSF52540 AFA_12710 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002876|IPR017856|IPR026564|IPR029072 Integrase-like, N-terminal|Transcriptional regulator TACO1-like|Transcriptional regulator TACO1-like, domain 3|YebC-like G3DSA:1.10.10.200|G3DSA:3.30.70.980|MF_00693|PF01709|SSF75625|TIGR01033 AFA_12715 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000115|IPR011054|IPR013815|IPR016185|IPR020560|IPR020561|IPR020562|IPR037123 ATP-grasp fold, subdomain 1|Phosphoribosylglycinamide synthetase|Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain|Phosphoribosylglycinamide synthetase, C-domain|Phosphoribosylglycinamide synthetase, C-domain superfamily|Phosphoribosylglycinamide synthetase, N-terminal|Pre-ATP-grasp domain superfamily|Rudiment single hybrid motif GO:0004637|GO:0005524|GO:0009113 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|G3DSA:3.90.600.10|MF_00138|PF01071|PF02843|PF02844|SM01209|SM01210|SSF51246|SSF52440|SSF56059|TIGR00877 AFA_12720 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001260|IPR018375|IPR036406 Coproporphyrinogen III oxidase, aerobic|Coproporphyrinogen III oxidase, conserved site|Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 G3DSA:3.40.1500.10|MF_00333|PF01218|PIRSF000166|PR00073|PS01021|SSF102886 AFA_12725 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004821|IPR005248|IPR014729 Cytidyltransferase-like domain|Nicotinate/nicotinamide nucleotide adenylyltransferase|Rossmann-like alpha/beta/alpha sandwich fold GO:0003824|GO:0009058|GO:0009435|GO:0016779 G3DSA:3.40.50.620|MF_00244|PF01467|SSF52374|TIGR00482 AFA_12730 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004394 Protein Iojap/ribosomal silencing factor RsfS G3DSA:3.30.460.10|MF_01477|PF02410|SSF81301|TIGR00090 AFA_12735 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003742|IPR029026|IPR029028 Alpha/beta knot methyltransferases|RNA methyltransferase RlmH|tRNA (guanine-N1-)-methyltransferase, N-terminal GO:0005737|GO:0006364|GO:0008168 G3DSA:3.40.1280.10|MF_00658|PF02590|PIRSF004505|SSF75217|TIGR00246 AFA_12740 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003697|IPR029001 Inosine triphosphate pyrophosphatase-like|Maf-like protein GO:0047429 G3DSA:3.90.950.10|MF_00528|PF02545|PIRSF006305|SSF52972|TIGR00172 AFA_12745 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009094|IPR012336|IPR036249 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily|Thioredoxin-like fold|Thioredoxin-like superfamily GO:0042597 G3DSA:3.10.450.70|G3DSA:3.40.30.10|PF13098|SSF52833|SSF54423 AFA_12750 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR027396 DsrEFH-like G3DSA:3.40.1260.10|SSF75169 AFA_12755 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010583 MltA-interacting MipA PF06629|SSF56935 AFA_12760 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001950|IPR005872|IPR036877 Archaeal/bacterial translation initiation factor SUI1|SUI1 domain|SUI1 domain superfamily GO:0003743|GO:0006413 G3DSA:3.30.780.10|PF01253|PIRSF037511|SSF55159 AFA_12765 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010352 Protein of unknown function DUF945 PF06097 AFA_12770 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006115|IPR008927|IPR013328|IPR015815|IPR029154|IPR036291 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0016491|GO:0050661|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|SSF48179|SSF51735 AFA_12775 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004045|IPR005955|IPR036249|IPR036282 Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Glutathione S-transferases, class Zeta|Thioredoxin-like superfamily GO:0003824|GO:0005515|GO:0005737|GO:0009072 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF02798|SSF47616|SSF52833|TIGR01262 AFA_12780 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 G3DSA:3.40.1010.20|G3DSA:3.40.50.11270|MF_00191|PF02401|TIGR00216 AFA_12785 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain G3DSA:2.40.10.330|G3DSA:3.10.50.40|PF00254|SSF54534 AFA_12790 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001405|IPR010994|IPR020891|IPR025657 RadC-like JAB domain|RuvA domain 2-like|Uncharacterised protein family UPF0758|Uncharacterised protein family UPF0758, conserved site G3DSA:3.40.140.10|PF04002|PS01302|SSF102712|SSF47781|TIGR00608 AFA_12795 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002150|IPR034704 L28p-like|Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.30.170.50|PF01197|PR01249|PS01143|SSF143800|TIGR00105 AFA_12805 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 PF01554|TIGR00797 AFA_12810 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR005892|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Glycine betaine transport ATP-binding subunit|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016020|GO:0016887|GO:0031460 G3DSA:3.10.580.10|G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|SSF54631|TIGR01186 AFA_12815 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_12820 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 G3DSA:3.10.105.10|G3DSA:3.40.190.100|PF04069|SSF53850 AFA_12825 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003333|IPR029063 Mycolic acid cyclopropane synthase|S-adenosyl-L-methionine-dependent methyltransferase GO:0008610 G3DSA:3.40.50.150|PF02353|PIRSF003085|SSF53335 AFA_12830 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004812|IPR011701|IPR036259 Drug resistance transporter Bcr/CmlA subfamily|MFS transporter superfamily|Major facilitator superfamily GO:0006855|GO:0015238|GO:0016021|GO:0055085 G3DSA:1.20.1720.10|PF07690|SSF103473|TIGR00710 AFA_12835 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001383|IPR026569|IPR034704|IPR037147 L28p-like|Ribosomal protein L28|Ribosomal protein L28/L24|Ribosomal protein L28/L24 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.30.170.40|MF_00373|PF00830|SSF143800|TIGR00009 AFA_12840 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001705|IPR011332|IPR018264|IPR038584 Ribosomal protein L33|Ribosomal protein L33 superfamily|Ribosomal protein L33, conserved site|Zinc-binding ribosomal protein GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.20.28.120|MF_00294|PF00471|PS00582|SSF57829|TIGR01023 AFA_12845 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001412|IPR002300|IPR002302|IPR009008|IPR009080|IPR013155|IPR014729|IPR015413|IPR025709 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Leucine-tRNA ligase|Leucyl-tRNA synthetase, editing domain|Methionyl/Leucyl tRNA synthetase|Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding|Rossmann-like alpha/beta/alpha sandwich fold|Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0000166|GO:0002161|GO:0004812|GO:0004823|GO:0005524|GO:0006418|GO:0006429 G3DSA:1.10.730.10|G3DSA:3.10.20.590|G3DSA:3.10.330.110|G3DSA:3.40.50.620|G3DSA:3.90.740.10|MF_00049_B|PF00133|PF08264|PF09334|PF13603|PR00985|PS00178|SSF47323|SSF50677|SSF52374|TIGR00396 AFA_12850 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 G3DSA:3.30.160.150|MF_01186|PF04390 AFA_12855 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005790|IPR008921|IPR010372|IPR027417 DNA polymerase III delta, N-terminal|DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal|DNA polymerase III, delta subunit|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0003887|GO:0006260|GO:0009360 G3DSA:1.10.8.60|G3DSA:1.20.272.10|G3DSA:3.40.50.300|PF06144|SSF48019|SSF52540|TIGR01128 AFA_12860 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000965|IPR012134|IPR015590|IPR016161|IPR016162|IPR016163|IPR020593 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde/histidinol dehydrogenase|GPR domain|Gamma-glutamyl phosphate reductase GPR, conserved site|Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0016491|GO:0016620|GO:0050661|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|MF_00412|PF00171|PIRSF000151|PS01223|SSF53720|TIGR00407 AFA_12865 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005265 Uncharacterised protein family UPF0093 PF03653|PIRSF004638 AFA_12870 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000241|IPR002052|IPR004114|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|Putative RNA methylase domain|S-adenosyl-L-methionine-dependent methyltransferase|THUMP domain GO:0003676|GO:0003723|GO:0008168|GO:0032259 G3DSA:3.30.2130.30|G3DSA:3.40.50.150|PF01170|PF02926|PS00092|PS01261|SM00981|SSF53335 AFA_12875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010432 RDD PF06271 AFA_12880 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000397|IPR016153|IPR016154|IPR023212 Heat shock protein Hsp33|Heat shock protein Hsp33, C-terminal|Heat shock protein Hsp33, N-terminal|Heat shock protein Hsp33, helix hairpin bin domain superfamily GO:0005737|GO:0006457|GO:0051082 G3DSA:1.10.287.480|G3DSA:3.55.30.10|G3DSA:3.90.1280.10|PF01430|PIRSF005261|SSF118352|SSF64397 AFA_12890 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007060|IPR023081 Cell division protein FtsB|Septum formation initiator FtsL/DivIC MF_00599|PF04977 AFA_12895 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000941|IPR020809|IPR020810|IPR020811|IPR029017|IPR036849 Enolase|Enolase, C-terminal TIM barrel domain|Enolase, N-terminal|Enolase, conserved site|Enolase-like, C-terminal domain superfamily|Enolase-like, N-terminal GO:0000015|GO:0000287|GO:0004634|GO:0006096 G3DSA:3.20.20.120|G3DSA:3.30.390.10|MF_00318|PF00113|PF03952|PIRSF001400|PR00148|PS00164|SM01192|SM01193|SSF51604|SSF54826|TIGR01060 AFA_12900 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR036388|IPR036390 MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF12802|PR00598|SM00347|SSF46785 AFA_12905 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|G3DSA:1.20.1720.10|PF07690|SSF103473 AFA_12910 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF00106|PR00081|SSF51735 AFA_12915 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010753|IPR011008 Dimeric alpha-beta barrel|Domain of unknown function DUF1330 G3DSA:3.30.70.100|PF07045|SSF54909 AFA_12920 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006218|IPR006269|IPR013785 3-deoxy-8-phosphooctulonate synthase|Aldolase-type TIM barrel|DAHP synthetase I/KDSA GO:0003824|GO:0005737|GO:0008676|GO:0009058 G3DSA:3.20.20.70|MF_00056|PF00793|SSF51569|TIGR01362 AFA_12925 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004468|IPR017456|IPR017926|IPR027417|IPR029062 CTP synthase|CTP synthase, N-terminal|Class I glutamine amidotransferase-like|Glutamine amidotransferase|P-loop containing nucleoside triphosphate hydrolase GO:0003883|GO:0006221 G3DSA:3.40.50.300|G3DSA:3.40.50.880|MF_01227|PF00117|PF06418|SSF52317|SSF52540|TIGR00337 AFA_12930 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000587|IPR000994|IPR029149|IPR032416|IPR036005 Creatinase, N-terminal|Creatinase/Aminopeptidase P/Spt16, N-terminal|Creatinase/aminopeptidase-like|Peptidase M24|Peptidase M24, C-terminal domain GO:0016787 G3DSA:3.40.350.10|G3DSA:3.90.230.10|PF00557|PF01321|PF16188|PF16189|SSF53092|SSF55920 AFA_12935 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004164|IPR004165|IPR012791|IPR037171 3-oxoacid CoA-transferase, subunit B|Coenzyme A transferase active site|Coenzyme A transferase family I|NagB/RpiA transferase-like GO:0008410 G3DSA:3.40.1080.10|PF01144|PS01274|SM00882|SSF100950|TIGR02428 AFA_12940 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004163|IPR004165|IPR012792|IPR037171 3-oxoacid CoA-transferase, subunit A|Coenzyme A transferase binding site|Coenzyme A transferase family I|NagB/RpiA transferase-like GO:0008410 G3DSA:3.40.1080.10|PF01144|PS01273|SM00882|SSF100950|TIGR02429 AFA_12945 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029069 HotDog domain superfamily G3DSA:3.10.129.10|PF13279|SSF54637 AFA_12950 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR036188 FAD/NAD(P)-binding domain superfamily G3DSA:3.30.70.20|G3DSA:3.30.9.90|G3DSA:3.50.50.60|PF05187|PF13450|PR00420|SSF51905|SSF54373|SSF54862 AFA_12955 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 AFA_12960 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR011904|IPR020845|IPR025110|IPR032387 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Acetate-CoA ligase|Acetyl-coenzyme A synthetase, N-terminal domain GO:0003824|GO:0003987|GO:0016208|GO:0019427 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|MF_01123|PF00501|PF13193|PF16177|PS00455|SSF56801|TIGR02188 AFA_12965 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR024671|IPR036259 Autophagy-related protein 22-like|MFS transporter superfamily G3DSA:1.20.1250.20|PF11700|SSF103473 AFA_12970 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000064|IPR038765 Endopeptidase, NLPC/P60 domain|Papain-like cysteine peptidase superfamily G3DSA:3.90.1720.10|PF00877|SSF54001 AFA_12975 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016772 Uncharacterised conserved protein UCP020408 PF10087|PIRSF020408 AFA_12980 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_12985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010061|IPR015590|IPR016160|IPR016161|IPR016162|IPR016163 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde/histidinol dehydrogenase|Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|SSF53720|TIGR01722 AFA_12990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 AFA_12995 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR010105|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily|TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935|TIGR01783 AFA_13000 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002491 ABC transporter periplasmic binding domain G3DSA:3.40.50.1980|PF01497|SSF53807 AFA_13005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000522|IPR037294 ABC transporter, BtuC-like|ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 G3DSA:1.10.3470.10|PF01032|SSF81345 AFA_13010 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_13015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011251|IPR016215|IPR036661 Luciferase-like domain|Luciferase-like domain superfamily|Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497|GO:0016705|GO:0055114 G3DSA:3.20.20.30|PF00296|PIRSF000337|SSF51679|TIGR03860 AFA_13020 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001647|IPR009057|IPR023772|IPR036271 DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PR00455|PS01081|SSF46689|SSF48498 AFA_13025 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005495|IPR030922 LPS export ABC transporter permease LptF|Permease LptG/LptF-related GO:0016021|GO:0043190|GO:0055085 PF03739|TIGR04407 AFA_13030 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000819|IPR008283|IPR011356|IPR023042 Peptidase M17, leucine aminopeptidase|Peptidase M17, leucine aminopeptidase/peptidase B|Peptidase M17, leucyl aminopeptidase, C-terminal|Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0005737|GO:0006508|GO:0008235|GO:0019538|GO:0030145 G3DSA:3.40.220.10|G3DSA:3.40.630.10|MF_00181|PF00883|PF02789|PR00481|PS00631|SSF52949|SSF53187 AFA_13035 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007459|IPR036768 DNA polymerase III chi subunit, HolC|DNA polymerase III subunit chi superfamily GO:0003677|GO:0003887|GO:0006260 G3DSA:3.40.50.10110|PF04364|SSF102400 AFA_13040 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006214 Bax inhibitor 1-related PF01027 AFA_13045 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001451|IPR005881|IPR011004 Hexapeptide repeat|Serine O-acetyltransferase|Trimeric LpxA-like superfamily GO:0005737|GO:0006535|GO:0009001 G3DSA:1.10.3130.10|G3DSA:2.160.10.10|PF00132|PIRSF000441|SSF51161 AFA_13050 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620|IPR004626 EamA domain|RarD protein GO:0005887|GO:0016020|GO:0016021 PF00892|SSF103481|TIGR00688 AFA_13055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002716 PIN domain PF13470 AFA_13060 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003717|IPR012340|IPR022572|IPR037278 ARFGAP/RecO-like zinc finger|DNA replication/recombination mediator RecO, N-terminal|Nucleic acid-binding, OB-fold|Recombination protein O, RecO GO:0006281|GO:0006310 G3DSA:1.20.1440.120|G3DSA:2.40.50.140|PF02565|PF11967|SSF50249|SSF57863|TIGR00613 AFA_13065 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004044|IPR005225|IPR005662|IPR006073|IPR009019|IPR015946|IPR027417 GTP binding domain|GTP-binding protein Era|K Homology domain, type 2|K homology domain superfamily, prokaryotic type|K homology domain-like, alpha/beta|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain GO:0003723|GO:0005525|GO:0005622 G3DSA:3.30.300.20|G3DSA:3.40.50.300|MF_00367|PF01926|PF07650|PR00326|SSF52540|SSF54814|TIGR00231|TIGR00436 AFA_13070 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000999|IPR011907|IPR014720|IPR036389 Double-stranded RNA-binding domain|Ribonuclease III|Ribonuclease III domain|Ribonuclease III, endonuclease domain superfamily GO:0003723|GO:0004525|GO:0006396|GO:0016075 G3DSA:1.10.1520.10|G3DSA:3.30.160.20|MF_00104|PF00035|PF14622|PS00517|SM00358|SM00535|SSF54768|SSF69065|TIGR02191 AFA_13075 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000223|IPR015927|IPR019533|IPR019756|IPR019757|IPR019758|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S24/S26A/S26B/S26C|Peptidase S26|Peptidase S26A, signal peptidase I|Peptidase S26A, signal peptidase I, conserved site|Peptidase S26A, signal peptidase I, lysine active site|Peptidase S26A, signal peptidase I, serine active site GO:0006508|GO:0008236|GO:0016020|GO:0016021 G3DSA:2.10.109.10|G3DSA:2.170.230.10|PF00717|PF10502|PR00727|PS00501|PS00760|PS00761|SSF51306|TIGR02227 AFA_13080 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000640|IPR000795|IPR004161|IPR005225|IPR006297|IPR009000|IPR013842|IPR027417|IPR031157|IPR035647|IPR038363 EF-G domain III/V-like|Elongation factor 4|Elongation factor EFG, domain V-like|GTP-binding protein LepA, C-terminal|LepA, C-terminal domain superfamily|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFTu-like, domain 2|Translation protein, beta-barrel domain superfamily GO:0003924|GO:0005525 G3DSA:2.40.30.10|G3DSA:3.30.70.2570|G3DSA:3.30.70.3380|G3DSA:3.30.70.870|G3DSA:3.40.50.300|MF_00071|PF00009|PF00679|PF03144|PF06421|PR00315|PS00301|SM00838|SSF50447|SSF52540|SSF54980|TIGR00231|TIGR01393 AFA_13085 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001478|IPR001940|IPR009003|IPR011782|IPR036034 PDZ domain|PDZ superfamily|Peptidase S1, PA clan|Peptidase S1C|Peptidase S1C, Do GO:0004252|GO:0005515|GO:0006508 G3DSA:2.30.42.10|G3DSA:2.40.10.120|PF13180|PF13365|PR00834|SM00228|SSF50156|SSF50494|TIGR02037 AFA_13090 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005588|IPR033434|IPR033436|IPR038484 MucB/RseB|MucB/RseB, C-terminal|MucB/RseB, C-terminal domain superfamily|MucB/RseB, N-terminal G3DSA:2.50.20.10|G3DSA:3.30.200.100|PF03888|PF17188|PIRSF005427 AFA_13095 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005572|IPR036147 Anti sigma-E protein RseA, N-terminal|Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 G3DSA:1.10.10.880|PF03872|SSF89069 AFA_13100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000838|IPR007627|IPR013249|IPR013324|IPR013325|IPR014284|IPR014286|IPR036388 RNA polymerase sigma factor 70, ECF, conserved site|RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70 RpoE type|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF04542|PF08281|PS01063|SSF88659|SSF88946|TIGR02937|TIGR02939 AFA_13110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014030|IPR014031|IPR016039|IPR017568|IPR018201|IPR020841 3-oxoacyl-[acyl-carrier-protein] synthase 2|Beta-ketoacyl synthase, C-terminal|Beta-ketoacyl synthase, N-terminal|Beta-ketoacyl synthase, active site|Polyketide synthase, beta-ketoacyl synthase domain|Thiolase-like GO:0003824|GO:0006633|GO:0016747 G3DSA:3.40.47.10|PF00109|PF02801|PIRSF000447|PS00606|SM00825|SSF53901|TIGR03150 AFA_13115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003231|IPR006162|IPR009081|IPR036736 ACP-like superfamily|Acyl carrier protein (ACP)|Phosphopantetheine attachment site|Phosphopantetheine binding ACP domain GO:0006633 G3DSA:1.10.1200.10|MF_01217|PD000887|PF00550|PS00012|SSF47336|TIGR00517 AFA_13120 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR011284|IPR020904|IPR036291 3-oxoacyl-(acyl-carrier-protein) reductase|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0004316|GO:0006633|GO:0016491|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SM00822|SSF51735|TIGR01830 AFA_13125 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001227|IPR004410|IPR014043|IPR016035|IPR016036|IPR020801|IPR024925 Acyl transferase|Acyl transferase domain superfamily|Acyl transferase/acyl hydrolase/lysophospholipase|Malonyl CoA-acyl carrier protein transacylase|Malonyl CoA-acyl carrier protein transacylase, FabD-type|Malonyl-CoA ACP transacylase, ACP-binding|Polyketide synthase, acyl transferase domain GO:0004314|GO:0016740 G3DSA:3.30.70.250|G3DSA:3.40.366.10|PF00698|PIRSF000446|SM00827|SSF52151|SSF55048|TIGR00128 AFA_13130 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004655|IPR013747|IPR013751|IPR016039 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III|3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal|3-oxoacyl-[acyl-carrier-protein] synthase 3|Thiolase-like GO:0003824|GO:0004315|GO:0006633 G3DSA:3.40.47.10|MF_01815|PF08541|PF08545|SSF53901|TIGR00747 AFA_13135 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003664|IPR012281 Fatty acid synthesis PlsX protein|Phospholipid biosynthesis protein, PlsX-like GO:0003824|GO:0006633|GO:0016747 G3DSA:3.40.718.10|MF_00019|PF02504|PIRSF002465|SSF53659|TIGR00182 AFA_13140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002677|IPR011332 Ribosomal protein L32p|Zinc-binding ribosomal protein GO:0003735|GO:0006412|GO:0015934 MF_00340|PF01783|SSF57829|TIGR01031 AFA_13145 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003772 Large ribosomal RNA subunit accumulation protein YceD PF02620 AFA_13150 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003697|IPR029001 Inosine triphosphate pyrophosphatase-like|Maf-like protein GO:0047429 G3DSA:3.90.950.10|MF_00528|PF02545|PIRSF006305|SSF52972|TIGR00172 AFA_13155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008189|IPR014776|IPR014777|IPR035996 Tetrapyrrole methylase superfamily|Tetrapyrrole methylase, subdomain 1|Tetrapyrrole methylase, subdomain 2|rRNA small subunit methyltransferase I GO:0008168 G3DSA:3.30.950.10|G3DSA:3.40.1010.10|PIRSF005917|SSF53790 AFA_13160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002477|IPR002502|IPR036365|IPR036366|IPR036505 N-acetylmuramoyl-L-alanine amidase domain|N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily|PGBD superfamily|PGBD-like superfamily|Peptidoglycan binding-like GO:0008745|GO:0009253 G3DSA:1.10.101.10|G3DSA:3.40.80.10|PF01471|PF01510|SM00644|SSF47090|SSF55846 AFA_13165 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013130|IPR022837 Ferric reductase transmembrane component-like domain|Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 MF_01207|PF01794 AFA_13170 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000572|IPR022867|IPR036374 Oxidoreductase, molybdopterin-binding domain|Oxidoreductase, molybdopterin-binding domain superfamily|Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0042128|GO:0043546|GO:0055114 G3DSA:3.90.420.10|MF_01206|PF00174|SSF56524 AFA_13175 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006439|IPR023198|IPR023214|IPR036412 HAD hydrolase, subfamily IA|HAD superfamily|HAD-like superfamily|Phosphoglycolate phosphatase-like, domain 2 GO:0016787 G3DSA:1.10.150.240|G3DSA:3.40.50.1000|PF13419|SSF56784|TIGR01509|TIGR01549 AFA_13180 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002942|IPR006145|IPR006224|IPR006225|IPR020103|IPR036986 Pseudouridine synthase, RluC/RluD|Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain superfamily|RNA-binding S4 domain|RNA-binding S4 domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.10.290.10|G3DSA:3.30.2350.10|PF00849|PF01479|PS01129|SM00363|SSF55120|SSF55174|TIGR00005 AFA_13185 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003029|IPR004659|IPR012340|IPR019307|IPR022967|IPR028878 Nucleic acid-binding, OB-fold|RNA-binding domain, S1|RNA-binding protein AU-1/Ribonuclease E/G|Ribonuclease E|Ribonuclease E/G|S1 domain GO:0003676|GO:0003723|GO:0004540|GO:0006396|GO:0008995 G3DSA:2.40.50.140|G3DSA:3.40.1260.20|MF_00970|PF00575|PF10150|SM00316|SSF50249|TIGR00757 AFA_13190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000438|IPR029045|IPR034733 Acetyl-CoA carboxylase|Acetyl-CoA carboxylase carboxyl transferase, beta subunit|ClpP/crotonase-like domain superfamily GO:0003989|GO:0006633|GO:0009317 G3DSA:3.90.226.10|MF_01395|PF01039|PR01070|SSF52096|TIGR00515 AFA_13195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002028|IPR011060|IPR013785 Aldolase-type TIM barrel|Ribulose-phosphate binding barrel|Tryptophan synthase, alpha chain GO:0003824|GO:0004834|GO:0006568 G3DSA:3.20.20.70|MF_00131|PF00290|SSF51366|TIGR00262 AFA_13200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001926|IPR006653|IPR006654|IPR023026|IPR036052 Pyridoxal-phosphate dependent enzyme|Tryptophan synthase beta chain/beta chain-like|Tryptophan synthase beta subunit-like PLP-dependent enzyme|Tryptophan synthase, beta chain|Tryptophan synthase, beta chain, conserved site GO:0000162|GO:0004834|GO:0006568 G3DSA:3.40.50.1100|MF_00133|PF00291|PIRSF001413|PS00168|SSF53686|TIGR00263 AFA_13205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002912|IPR003607|IPR004095|IPR004811|IPR007685|IPR012675|IPR012676 ACT domain|Beta-grasp domain superfamily|HD/PDEase domain|RelA/SpoT|RelA/SpoT family|TGS|TGS-like GO:0015969 G3DSA:1.10.3210.10|G3DSA:3.10.20.30|G3DSA:3.30.460.10|G3DSA:3.30.70.260|PF02824|PF04607|PF13291|PF13328|SM00954|SSF109604|SSF55021|SSF81271|SSF81301|TIGR00691 AFA_13210 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005025|IPR029039 Flavoprotein-like superfamily|NADPH-dependent FMN reductase-like GO:0016491 G3DSA:3.40.50.360|PF03358|SSF52218 AFA_13215 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006406|IPR007229|IPR036068 Nicotinate phosphoribosyltransferase|Nicotinate phosphoribosyltransferase family|Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0004516|GO:0009435|GO:0019357 G3DSA:3.20.140.10|MF_00570|PF04095|PIRSF000484|SSF51690|SSF54675|TIGR01514 AFA_13220 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000813|IPR017896|IPR017900|IPR022569 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|7Fe ferredoxin|Ferredoxin, C-terminal GO:0009055 G3DSA:3.30.70.20|PF00037|PF11953|PR00354|PS00198|SSF54862 AFA_13225 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009656|IPR010915|IPR029058 Alpha/Beta hydrolase fold|PHB de-polymerase, C-terminal|Polyhydroxyalkanoate depolymerase G3DSA:3.40.50.1820|PF06850|PIRSF020818|SSF53474|TIGR01849 AFA_13230 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007202|IPR010207|IPR011005|IPR017900 4Fe-4S domain|4Fe-4S ferredoxin, iron-sulphur binding, conserved site|Dihydropteroate synthase-like|Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0044237|GO:0051536 G3DSA:3.20.20.20|G3DSA:3.30.70.20|PF04060|PF14697|PS00198|SSF54862|TIGR01944 AFA_13235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000445|IPR003265|IPR003651|IPR004035|IPR004036|IPR005759|IPR011257|IPR023170 DNA glycosylase|Endonuclease III|Endonuclease III, iron-sulphur binding site|Endonuclease III-like, conserved site-2|Endonuclease III-like, iron-sulphur cluster loop motif|Helix-hairpin-helix motif|Helix-turn-helix, base-excision DNA repair, C-terminal|HhH-GPD domain GO:0003677|GO:0003824|GO:0003906|GO:0006281|GO:0006284|GO:0051539 G3DSA:1.10.1670.10|G3DSA:1.10.340.30|MF_00942|PF00633|PF00730|PF10576|PIRSF001435|PS00764|PS01155|SM00478|SM00525|SSF48150|TIGR01083 AFA_13240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR027417 ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SSF52540 AFA_13245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005618|IPR011250 Outer membrane protein, OmpW|Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0019867 G3DSA:2.40.160.20|PF03922|SSF56925 AFA_13250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_13255 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851|IPR003439|IPR003593|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter, permease|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016020|GO:0016887|GO:0022857|GO:0055085 G3DSA:3.40.50.300|PF00005|PF02653|PF12399|SM00382|SSF52540 AFA_13260 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_13265 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 AFA_13270 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002579|IPR011057 Mss4-like superfamily|Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 G3DSA:2.170.150.20|MF_01400|PF01641|SSF51316|TIGR00357 AFA_13275 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006008 Intracellular septation protein A GO:0016021 MF_00189|PF04279|TIGR00997 AFA_13280 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002634|IPR036065 BolA protein|BolA-like superfamily G3DSA:3.30.300.90|PF01722|PIRSF003113|SSF82657 AFA_13285 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000297|IPR023058|IPR027304 Peptidyl-prolyl cis-trans isomerase, PpiC-type|Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site|Trigger factor/SurA domain superfamily GO:0003755 G3DSA:1.10.8.1040|G3DSA:3.10.50.40|PF00639|PS01096|SSF109998|SSF54534 AFA_13290 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001357|IPR001679|IPR003583|IPR004149|IPR004150|IPR010994|IPR012340|IPR013839|IPR013840|IPR018239|IPR033136|IPR036420 BRCT domain|BRCT domain superfamily|Helix-hairpin-helix DNA-binding motif, class 1|NAD-dependent DNA ligase|NAD-dependent DNA ligase, N-terminal|NAD-dependent DNA ligase, OB-fold|NAD-dependent DNA ligase, active site|NAD-dependent DNA ligase, adenylation|NAD-dependent DNA ligase, conserved site|Nucleic acid-binding, OB-fold|RuvA domain 2-like|Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003677|GO:0003911|GO:0006260|GO:0006281 G3DSA:1.10.150.20|G3DSA:1.10.287.610|G3DSA:2.20.70.80|G3DSA:2.40.50.140|G3DSA:3.30.470.90|G3DSA:3.40.50.10190|MF_01588|PF00533|PF01653|PF03119|PF03120|PF12826|PF14520|PIRSF001604|PS01055|PS01056|SM00278|SM00292|SM00532|SSF47781|SSF50249|SSF52113|SSF56091|TIGR00575 AFA_13295 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007449|IPR036765 ZipA, C-terminal FtsZ-binding domain|ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 G3DSA:3.30.1400.10|PD035754|PF04354|SM00771|SSF64383 AFA_13300 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003395|IPR010935|IPR011890|IPR024704|IPR027417|IPR036277 P-loop containing nucleoside triphosphate hydrolase|RecF/RecN/SMC, N-terminal|SMCs flexible hinge|SMCs flexible hinge superfamily|Structural maintenance of chromosomes protein|Structural maintenance of chromosomes protein, prokaryotic GO:0005515|GO:0005524|GO:0005694|GO:0007062|GO:0030261|GO:0051276 G3DSA:3.40.50.300|MF_01894|PF02463|PF06470|PIRSF005719|SM00968|SSF52540|SSF57997|SSF75553|TIGR02168 AFA_13305 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_13310 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005122|IPR005273|IPR036895 Uracil-DNA glycosylase family 4|Uracil-DNA glycosylase-like|Uracil-DNA glycosylase-like domain superfamily G3DSA:3.40.470.10|PF03167|SM00986|SM00987|SSF52141|TIGR00758 AFA_13315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR000905|IPR006464|IPR016181|IPR022496 Acyl-CoA N-acyltransferase|GNAT domain|Gcp-like domain|N-acetyltransferase RimI/Ard1|tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949|GO:0006474|GO:0016407 G3DSA:3.30.420.40|G3DSA:3.40.630.30|PF00583|PF00814|SSF53067|SSF55729|TIGR01575|TIGR03725 AFA_13320 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR001867|IPR011006|IPR016032|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF46894|SSF52172 AFA_13325 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR003660|IPR003661|IPR004358|IPR032408|IPR036097|IPR036890|IPR038421 HAMP domain|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Sensor histidine kinase RisS, periplasmic domain|Sensor histidine kinase RisS, periplasmic domain superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.300|G3DSA:3.30.565.10|PF00512|PF00672|PF02518|PF16524|PR00344|SM00304|SM00387|SM00388|SSF158472|SSF47384|SSF55874 AFA_13330 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003526|IPR020555|IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase|2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily|2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685|GO:0016114 G3DSA:3.30.1330.50|MF_00107|PF02542|PS01350|SSF69765|TIGR00151 AFA_13335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001228|IPR018294|IPR029044|IPR034683 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase|4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site|Cytidylyltransferase IspD/TarI|Nucleotide-diphospho-sugar transferases GO:0003824|GO:0008299|GO:0050518|GO:0070567 G3DSA:3.90.550.10|MF_00108|PF01128|PS01295|SSF53448|TIGR00453 AFA_13340 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001650|IPR003711|IPR004576|IPR005118|IPR011545|IPR014001|IPR027417|IPR036101|IPR037235 CarD-like/TRCF domain|CarD-like/TRCF domain superfamily|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|TRCF-like, C-terminal domain|Transcription-repair coupling factor|Transcription-repair-coupling factor, C-terminal domain GO:0003676|GO:0003684|GO:0005524|GO:0006281 G3DSA:2.30.30.840|G3DSA:3.30.2060.10|G3DSA:3.40.50.11140|G3DSA:3.40.50.11180|G3DSA:3.40.50.300|G3DSA:3.90.1150.50|MF_00969|PF00270|PF00271|PF02559|PF03461|SM00487|SM00490|SM00982|SM01058|SSF141259|SSF143517|SSF52540|TIGR00580 AFA_13350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023214|IPR025138|IPR036412 Domain of unknown function DUF4072|HAD superfamily|HAD-like superfamily G3DSA:3.40.50.1000|PF12710|PF13284|SSF56784|TIGR00338|TIGR01488 AFA_13355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004136|IPR013785 Aldolase-type TIM barrel|Nitronate monooxygenase GO:0003824|GO:0018580|GO:0055114 G3DSA:3.20.20.70|PF03060|SSF51412 AFA_13360 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016768 Uncharacterised conserved protein UCP019883, membrane PF10993 AFA_13365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001750|IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit GO:0008137|GO:0042773|GO:0055114 MF_00445|PF00361|TIGR01770 AFA_13370 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000260|IPR001750|IPR003918|IPR010227 NADH-quinone oxidoreductase, chain M/4|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit|NADH:ubiquinone oxidoreductase|NADH:ubiquinone oxidoreductase chain 4, N-terminal GO:0006120|GO:0008137|GO:0042773|GO:0055114 PF00361|PF01059|PR01437|TIGR01972 AFA_13375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001516|IPR001750|IPR003945|IPR018393 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal|NADH-plastoquinone oxidoreductase, chain 5|NADH-plastoquinone oxidoreductase, chain 5 subgroup|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit GO:0008137|GO:0042773|GO:0055114 PF00361|PF00662|PR01434|PR01435|TIGR01974 AFA_13380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001133|IPR039428 NADH-ubiquinone oxidoreductase chain 4L/K|NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like GO:0016651|GO:0042773|GO:0055114 MF_01456|PF00420 AFA_13385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 G3DSA:1.20.120.1200|PF00499 AFA_13390 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010226|IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 G3DSA:3.30.70.3270|MF_01351|PF12838|PS00198|SSF54862|TIGR01971 AFA_13395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001694|IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site|NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 MF_01350|PF00146|PS00668 AFA_13400 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000283|IPR006656|IPR006657|IPR009010|IPR010228|IPR019574|IPR036010 2Fe-2S ferredoxin-like superfamily|Aspartate decarboxylase-like domain superfamily|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site|NADH:ubiquinone oxidoreductase, subunit G|NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0008137|GO:0009055|GO:0016020|GO:0016491|GO:0016651|GO:0042773|GO:0043546|GO:0051536|GO:0055114 G3DSA:2.40.40.20|G3DSA:3.10.20.740|G3DSA:3.30.70.20|G3DSA:3.40.228.10|G3DSA:3.40.50.740|PF00384|PF01568|PF10588|PF13510|PS00641|PS00642|SM00929|SSF50692|SSF53706|SSF54292|SSF54862|TIGR01973 AFA_13405 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001949|IPR011537|IPR011538|IPR019554|IPR019575|IPR037207|IPR037225 NADH ubiquinone oxidoreductase, F subunit|NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain|NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily|NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain|NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily|NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site|Soluble ligand binding domain GO:0008137|GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 G3DSA:1.20.1440.230|G3DSA:3.10.20.600|G3DSA:3.40.50.11540|PF01512|PF10531|PF10589|PS00645|SM00928|SSF140490|SSF142019|SSF142984|TIGR01959 AFA_13410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002023|IPR036249 NADH-quinone oxidoreductase subunit E-like|Thioredoxin-like superfamily GO:0016491|GO:0055114 G3DSA:1.10.10.1590|G3DSA:3.40.30.10|PF01257|PIRSF000216|SSF52833|TIGR01958 AFA_13415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001135|IPR014029|IPR022885|IPR029014|IPR038290 NAD(P)H-quinone oxidoreductase subunit D/H|NADH-quinone oxidoreductase, subunit D|NADH-quinone oxidoreductase, subunit D superfamily|NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site|[NiFe]-hydrogenase, large subunit GO:0016651|GO:0048038|GO:0051287|GO:0055114 G3DSA:1.10.645.20|MF_01358|PF00346|PS00535|SSF56762|TIGR01962 AFA_13420 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001268|IPR010218|IPR020396|IPR037232 NADH dehydrogenase, subunit C|NADH:ubiquinone oxidoreductase, 30kDa subunit|NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily|NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0008137|GO:0016651|GO:0055114 G3DSA:3.30.460.80|MF_01357|PD001581|PF00329|PS00542|SSF143243|TIGR01961 AFA_13425 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006137|IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit|NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0008137|GO:0048038|GO:0051536|GO:0051539|GO:0055114 G3DSA:3.40.50.12280|MF_01356|PF01058|PS01150|SSF56770|TIGR01957 AFA_13430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000440|IPR023043|IPR038430 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid|NADH:ubiquinone oxidoreductase, subunit 3 superfamily|NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0016651|GO:0055114 G3DSA:1.20.58.1610|MF_01394|PF00507 AFA_13435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002299|IPR023614 Porin domain superfamily|Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 G3DSA:2.40.160.10|PF13609|PR00184|SSF56935 AFA_13445 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 PF03840|PR01651|TIGR00810 AFA_13450 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000652|IPR013785|IPR020861|IPR022896|IPR035990 Aldolase-type TIM barrel|Triosephosphate isomerase|Triosephosphate isomerase superfamily|Triosephosphate isomerase, active site|Triosephosphate isomerase, bacterial/eukaryotic GO:0003824|GO:0004807|GO:0006096 G3DSA:3.20.20.70|MF_00147_B|PF00121|PS00171|SSF51351|TIGR00419 AFA_13455 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011032|IPR013149|IPR013154|IPR014189|IPR020843|IPR036291 Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain|Quinone oxidoreductase PIG3 GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|SM00829|SSF50129|SSF51735|TIGR02824 AFA_13475 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001247|IPR003029|IPR004087|IPR004088|IPR012162|IPR012340|IPR015847|IPR015848|IPR020568|IPR022967|IPR027408|IPR036345|IPR036456|IPR036612 Exoribonuclease, PH domain 2 superfamily|Exoribonuclease, phosphorolytic domain 1|Exoribonuclease, phosphorolytic domain 2|K Homology domain|K Homology domain, type 1|K Homology domain, type 1 superfamily|Nucleic acid-binding, OB-fold|PNPase/RNase PH domain superfamily|Polyribonucleotide nucleotidyltransferase|Polyribonucleotide nucleotidyltransferase, RNA-binding domain|Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily|RNA-binding domain, S1|Ribosomal protein S5 domain 2-type fold|S1 domain GO:0003676|GO:0003723|GO:0004654|GO:0006396|GO:0006402 G3DSA:2.40.50.140|G3DSA:3.30.1370.10|G3DSA:3.30.230.70|MF_01595|PF00013|PF00575|PF01138|PF03725|PF03726|PIRSF005499|SM00316|SM00322|SSF46915|SSF50249|SSF54211|SSF54791|SSF55666|TIGR03591 AFA_13480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000589|IPR005290|IPR009068 Ribosomal protein S15|Ribosomal protein S15, bacterial-type|S15/NS1, RNA-binding GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.10.287.10|MF_01343_B|PD157043|PF00312|PS00362|SM01387|SSF47060|TIGR00952 AFA_13485 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000462|IPR004533 CDP-alcohol phosphatidyltransferase|CDP-diacylglycerol--serine O-phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 G3DSA:1.20.120.1760|PF01066|PS00379|TIGR00473 AFA_13490 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000506|IPR008927|IPR013023|IPR013116|IPR014359|IPR036291 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|Ketol-acid reductoisomerase|Ketol-acid reductoisomerase, C-terminal|Ketol-acid reductoisomerase, N-terminal|Ketol-acid reductoisomerase, prokaryotic|NAD(P)-binding domain superfamily GO:0004455|GO:0009082|GO:0016491|GO:0050661|GO:0055114 G3DSA:1.10.3730.40|G3DSA:3.40.50.720|MF_00435|PF01450|PF07991|PIRSF000116|SSF48179|SSF51735|TIGR00465 AFA_13495 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004789|IPR019455|IPR027271 Acetolactate synthase, small subunit|Acetolactate synthase, small subunit, C-terminal|Acetolactate synthase/Transcription factor NikR, C-terminal GO:0003984|GO:0009082 G3DSA:3.30.70.1150|G3DSA:3.30.70.260|PD002844|PF10369|PF13710|SSF55021|TIGR00119 AFA_13500 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011766|IPR012000|IPR012001|IPR012846|IPR029035|IPR029061 Acetolactate synthase, large subunit, biosynthetic|DHS-like NAD/FAD-binding domain superfamily|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain|Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0003824|GO:0003984|GO:0009082|GO:0030976|GO:0050660 G3DSA:3.40.50.1220|G3DSA:3.40.50.970|PF00205|PF02775|PF02776|SSF52467|SSF52518|TIGR00118 AFA_13505 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR032692 Integral membrane protein YccS, N-terminal PF12805|PF13515 AFA_13510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005583 Peroxide stress protein YaaA MF_00652|PF03883 AFA_13515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR011294|IPR020904|IPR036291 3-hydroxybutyrate dehydrogenase|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0003858|GO:0016491|GO:0055114 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SSF51735|TIGR01963 AFA_13525 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001466|IPR012338|IPR021860 Beta-lactamase-related|Beta-lactamase/transpeptidase-like|Peptidase S12, Pab87-related, C-terminal G3DSA:2.40.128.600|G3DSA:3.40.710.10|PF00144|PF11954|SSF56601 AFA_13540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002314|IPR002317|IPR010978|IPR015866 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)|Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm|Serine-tRNA ligase, type1|Serine-tRNA synthetase, type1, N-terminal GO:0000166|GO:0004812|GO:0004828|GO:0005524|GO:0005737|GO:0006418|GO:0006434 G3DSA:1.10.287.40|G3DSA:3.30.930.10|MF_00176|PF00587|PF02403|PIRSF001529|PR00981|SSF46589|SSF55681|TIGR00414 AFA_13545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003593|IPR003959|IPR008921|IPR021886|IPR027417|IPR032423 AAA C-terminal domain|AAA+ ATPase domain|ATPase, AAA-type, core|DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal|MgsA AAA+ ATPase C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0005524|GO:0006260 G3DSA:1.10.3710.10|G3DSA:1.10.8.60|G3DSA:1.20.272.10|G3DSA:3.40.50.300|PF00004|PF12002|PF16193|SM00382|SSF48019|SSF52540 AFA_13550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004564|IPR018323|IPR029046 Lipoprotein localisation LolA/LolB/LppX|Outer membrane lipoprotein carrier protein LolA, Proteobacteria|Outer membrane lipoprotein carrier protein LolA-like GO:0042597|GO:0042953|GO:0042954 G3DSA:2.50.20.10|MF_00240|PF03548|SSF89392|TIGR00547 AFA_13555 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002543|IPR003593|IPR018541|IPR025199|IPR027417|IPR036388|IPR036390 AAA+ ATPase domain|DNA translocase FtsK, 4TM region|FtsK domain|FtsK gamma domain|P-loop containing nucleoside triphosphate hydrolase|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0000166|GO:0003677|GO:0005524 G3DSA:1.10.10.10|G3DSA:3.30.980.40|G3DSA:3.40.50.300|PF01580|PF09397|PF13491|SM00382|SM00843|SSF46785|SSF52540 AFA_13560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000103|IPR005982|IPR008255|IPR023753|IPR036188 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|Pyridine nucleotide-disulphide oxidoreductase, class-II|Pyridine nucleotide-disulphide oxidoreductase, class-II, active site|Thioredoxin reductase GO:0004791|GO:0005737|GO:0016491|GO:0019430|GO:0055114 G3DSA:3.50.50.60|PF07992|PR00368|PR00469|PS00573|SSF51905|TIGR01292 AFA_13565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002625|IPR036063 Smr domain|Smr domain superfamily G3DSA:3.30.1370.110|PF01713|SM00463|SSF160443 AFA_13570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011990|IPR019734 Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|PF14559|SM00028|SSF48452 AFA_13575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic SSF144052 AFA_13580 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005829|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PS00217|SSF103473 AFA_13585 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002563|IPR012349 FMN-binding split barrel|Flavin reductase like domain GO:0010181|GO:0048037 G3DSA:2.30.110.10|PF01613|SM00903|SSF50475 AFA_13590 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011008|IPR013097 Dimeric alpha-beta barrel|Stress responsive alpha-beta barrel G3DSA:3.30.70.100|PF07876|SM00886|SSF54909 AFA_13595 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011965|IPR012906|IPR013225|IPR036388 PaaX-like, C-terminal|PaaX-like, N-terminal|Phenylacetic acid degradation operon negative regulatory protein PaaX|Winged helix-like DNA-binding domain superfamily GO:0006351 G3DSA:1.10.10.10|PF07848|PF08223|PIRSF020623 AFA_13600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002018|IPR019826|IPR029058 Alpha/Beta hydrolase fold|Carboxylesterase type B, active site|Carboxylesterase, type B G3DSA:3.40.50.1820|PF00135|PS00122|SSF53474 AFA_13605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009100|IPR013107|IPR036250|IPR037069 Acyl-CoA dehydrogenase, C-terminal domain|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF08028|PIRSF016578|SSF47203|SSF56645 AFA_13610 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004439|IPR019818|IPR024084 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic|Isocitrate/isopropylmalate dehydrogenase, conserved site|Isopropylmalate dehydrogenase-like domain GO:0000287|GO:0004450|GO:0006099|GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.718.10|PF00180|PS00470|SM01329|SSF53659|TIGR00183 AFA_13615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014993 Protein of unknown function DUF1841 PF08897 AFA_13620 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009056|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF00034|SSF46626 AFA_13625 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|SSF46626 AFA_13630 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003593|IPR003959|IPR027417 AAA+ ATPase domain|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF00004|SM00382|SSF52540 AFA_13635 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF13302|SSF55729 AFA_13640 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008912 Uncharacterised protein family CoxE-like PF05762 AFA_13645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021350 Protein of unknown function DUF2968 PF11180 AFA_13650 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002078|IPR002197|IPR003593|IPR009057|IPR025662|IPR027417 AAA+ ATPase domain|DNA binding HTH domain, Fis-type|Homeobox-like domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1 GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00158|PF02954|PS00675|SM00382|SSF46689|SSF52540 AFA_13655 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal PF13400 AFA_13660 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR022053 Protein of unknown function DUF3613 PF12266 AFA_13665 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011990|IPR019734 Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|PF14559|SM00028|SSF48452 AFA_13670 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018076 Type II secretion system F domain PF00482 AFA_13675 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018076 Type II secretion system F domain PF00482 AFA_13680 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001482|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type II/IV secretion system protein G3DSA:3.30.450.380|G3DSA:3.40.50.300|PF00437|SSF52540 AFA_13685 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|SSF52540 AFA_13690 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001775|IPR004846|IPR032789 GspD/PilQ family|Pilus formation protein, N-terminal|Type II/III secretion system GO:0009306 PF00263|PF13629|PR00811 AFA_13695 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013974|IPR017592|IPR031571 Flp pilus assembly protein RcpC/CpaB domain|Pilus assembly, Flp-type CpaB|SAF domain PF08666|PF16976|SM00858|TIGR03177 AFA_13700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012495 TadE-like PF07811 AFA_13705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012495 TadE-like PF07811 AFA_13710 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 G3DSA:1.20.120.1220|PF01478 AFA_13715 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007047 Flp/Fap pilin component PF04964 AFA_13720 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005565|IPR013686 Haemolysin activator HlyB, C-terminal|Polypeptide-transport-associated, ShlB-type G3DSA:2.40.160.50|G3DSA:3.10.20.310|PF03865|PF08479 AFA_13725 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR031929 Bacterial collagen-like protein, middle domain PF15984 AFA_13730 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR036388|IPR036390 MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01047|SM00347|SSF46785 AFA_13735 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR031929 Bacterial collagen-like protein, middle domain PF15984 AFA_13745 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR036388|IPR036390 MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF12802|SM00347|SSF46785 AFA_13750 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001431|IPR007863|IPR011249|IPR011765 Metalloenzyme, LuxS/M16 peptidase-like|Peptidase M16, C-terminal|Peptidase M16, N-terminal|Peptidase M16, zinc-binding site GO:0003824|GO:0004222|GO:0006508|GO:0046872 G3DSA:3.30.830.10|PF00675|PF05193|PS00143|SSF63411 AFA_13755 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001305|IPR001623|IPR002939|IPR008971|IPR012724|IPR018253|IPR036410|IPR036869 Chaperone DnaJ|Chaperone DnaJ, C-terminal|Chaperone J-domain superfamily|DnaJ domain|DnaJ domain, conserved site|HSP40/DnaJ peptide-binding|Heat shock protein DnaJ, cysteine-rich domain|Heat shock protein DnaJ, cysteine-rich domain superfamily GO:0005524|GO:0006457|GO:0009408|GO:0031072|GO:0051082 G3DSA:1.10.287.110|G3DSA:2.10.230.10|G3DSA:2.60.260.20|MF_01152|PF00226|PF00684|PF01556|PR00625|PS00636|SM00271|SSF46565|SSF49493|SSF57938|TIGR02349 AFA_13760 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012725|IPR013126|IPR018181|IPR029047|IPR029048 Chaperone DnaK|Heat shock protein 70 family|Heat shock protein 70, conserved site|Heat shock protein 70kD, C-terminal domain superfamily|Heat shock protein 70kD, peptide-binding domain superfamily GO:0005524|GO:0006457|GO:0051082 G3DSA:1.20.1270.10|G3DSA:2.60.34.10|G3DSA:3.30.420.40|G3DSA:3.90.640.10|MF_00332|PF00012|PR00301|PS00297|PS00329|PS01036|SSF100920|SSF100934|SSF53067|TIGR02350 AFA_13765 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000740|IPR009012|IPR013805 GrpE nucleotide exchange factor|GrpE nucleotide exchange factor, coiled-coil|GrpE nucleotide exchange factor, head GO:0000774|GO:0006457|GO:0042803|GO:0051087 G3DSA:2.30.22.10|G3DSA:3.90.20.20|MF_01151|PF01025|PR00773|PS01071|SSF51064|SSF58014 AFA_13770 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001015|IPR019772 Ferrochelatase|Ferrochelatase, active site GO:0004325|GO:0006783 G3DSA:3.40.50.1400|MF_00323|PF00762|PS00534|SSF53800|TIGR00109 AFA_13775 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002571|IPR005104|IPR021153|IPR023120|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Heat-inducible transcription repressor HrcA|Heat-inducible transcription repressor HrcA, C-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily|Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain|Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.390.60|G3DSA:3.30.450.40|MF_00081|PF01628|PF03444|PIRSF005485|SSF46785|SSF55781|TIGR00331 AFA_13780 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002504|IPR016064|IPR017437|IPR017438 ATP-NAD kinase, PpnK-type, C-terminal|Inorganic polyphosphate/ATP-NAD kinase, N-terminal|NAD kinase|NAD kinase/diacylglycerol kinase-like domain superfamily GO:0003951|GO:0006741|GO:0019674 G3DSA:2.60.200.30|G3DSA:3.40.50.10330|MF_00361|PF01513|SSF111331 AFA_13785 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003395|IPR004604|IPR027417 DNA recombination/repair protein RecN|P-loop containing nucleoside triphosphate hydrolase|RecF/RecN/SMC, N-terminal GO:0005524|GO:0006281|GO:0006310 G3DSA:3.40.50.300|PF02463|PIRSF003128|SSF52540|TIGR00634 AFA_13790 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002481|IPR036388|IPR036390 Ferric-uptake regulator|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.1490.190|PF01475|SSF46785 AFA_13795 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007450|IPR026592|IPR037873 BamE-like|Lipoprotein SmpA/OmlA|Outer membrane protein assembly factor BamE GO:0019867 G3DSA:3.30.1450.10|MF_00925|PF04355 AFA_13800 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000846|IPR022663|IPR022664|IPR023940|IPR036291 Dihydrodipicolinate reductase|Dihydrodipicolinate reductase, C-terminal|Dihydrodipicolinate reductase, N-terminal|Dihydrodipicolinate reductase, conserved site|NAD(P)-binding domain superfamily GO:0008839|GO:0009089|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_00102|PF01113|PF05173|PIRSF000161|PS01298|SSF51735|SSF55347|TIGR00036 AFA_13805 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|SM00345|SM00895|SSF46785|SSF48008 AFA_13810 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003170|IPR006094|IPR011601|IPR016167|IPR016169|IPR036318|IPR036635 FAD linked oxidase, N-terminal|FAD-binding, type PCMH, subdomain 1|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|UDP-N-acetylenolpyruvoylglucosamine reductase|UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal|UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0016491|GO:0050660|GO:0055114 G3DSA:3.30.43.10|G3DSA:3.30.465.10|G3DSA:3.90.78.10|MF_00037|PF01565|PF02873|SSF56176|SSF56194|TIGR00179 AFA_13830 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000014|IPR000160|IPR001610|IPR001633|IPR003018|IPR029016|IPR029787|IPR035919|IPR035965 EAL domain|EAL domain superfamily|GAF domain|GAF-like domain superfamily|GGDEF domain|Nucleotide cyclase|PAC motif|PAS domain|PAS domain superfamily GO:0005515 G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.450.40|G3DSA:3.30.70.270|PF00563|PF00990|PF01590|PF13426|SM00052|SM00065|SM00086|SM00091|SM00267|SSF141868|SSF55073|SSF55781|SSF55785|TIGR00229|TIGR00254 AFA_13835 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007837|IPR034660 DNA damage-inducible protein DinB|DinB/YfiT-like putative metalloenzymes G3DSA:1.20.120.450|PF05163|SSF109854 AFA_13840 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR010105|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily|TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935|TIGR01783 AFA_13845 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004812|IPR011701|IPR036259 Drug resistance transporter Bcr/CmlA subfamily|MFS transporter superfamily|Major facilitator superfamily GO:0006855|GO:0015238|GO:0016021|GO:0055085 G3DSA:1.20.1720.10|PF07690|SSF103473|TIGR00710 AFA_13850 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009057|IPR018060 DNA binding HTH domain, AraC-type|Homeobox-like domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12833|SM00342|SSF46689 AFA_13860 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000801|IPR029058 Alpha/Beta hydrolase fold|Putative esterase G3DSA:3.40.50.1820|PF00756|SSF53474 AFA_13865 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010102|IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR029510 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase|Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|SSF53720|TIGR01780 AFA_13870 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002872|IPR005933|IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR024082|IPR024089|IPR025703|IPR029041 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde/histidinol dehydrogenase|Bifunctional protein PutA|Delta-1-pyrroline-5-carboxylate dehydrogenase 3|FAD-linked oxidoreductase-like|Proline dehydrogenase PutA, domain I/II|Proline dehydrogenase PutA, domain II|Proline dehydrogenase domain GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0006561|GO:0010133|GO:0016491|GO:0016620|GO:0055114 G3DSA:3.20.20.220|G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PF01619|PF14850|PIRSF000197|PS00070|SSF51730|SSF53720|SSF81935|TIGR01238 AFA_13875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000485|IPR011008|IPR019887|IPR019888|IPR036388|IPR036390 AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13412|PR00033|SM00344|SSF46785|SSF54909 AFA_13880 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001387|IPR010982|IPR011051|IPR013096|IPR014710 Cro/C1-type helix-turn-helix domain|Cupin 2, conserved barrel|Lambda repressor-like, DNA-binding domain superfamily|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold GO:0003677|GO:0043565 G3DSA:1.10.260.40|G3DSA:2.60.120.10|PF01381|PF07883|SM00530|SSF47413|SSF51182 AFA_13885 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003462|IPR023401|IPR036291 NAD(P)-binding domain superfamily|Ornithine cyclodeaminase, N-terminal|Ornithine cyclodeaminase/mu-crystallin G3DSA:3.30.1780.10|G3DSA:3.40.50.720|PF02423|PIRSF001439|SSF51735 AFA_13890 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005828|IPR005829|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Major facilitator, sugar transporter-like|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1250.20|PF00083|PF07690|PS00217|SSF103473 AFA_13895 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000629|IPR001650|IPR005580|IPR011545|IPR012677|IPR014001|IPR027417 ATP-dependent RNA helicase DEAD-box, conserved site|DEAD box helicase DbpA/CsdA, RNA-binding domain|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|Nucleotide-binding alpha-beta plait domain superfamily|P-loop containing nucleoside triphosphate hydrolase GO:0003676|GO:0005524 G3DSA:3.30.70.330|G3DSA:3.40.50.300|PF00270|PF00271|PF03880|PS00039|SM00487|SM00490|SSF52540 AFA_13900 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009241|IPR014056 Addiction module killer protein, predicted|Toxin HigB-like PF05973|PIRSF028744|TIGR02683 AFA_13905 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001387|IPR010982|IPR014057 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily|Uncharacterized protein HI1420 GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SSF47413|TIGR02684 AFA_13910 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_13915 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001663|IPR015879|IPR017941|IPR036922 Aromatic-ring-hydroxylating dioxygenase, alpha subunit|Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain|Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0005506|GO:0016491|GO:0044237|GO:0051537|GO:0055114 G3DSA:2.102.10.10|G3DSA:3.90.380.10|PF00355|PF00848|PR00090|SSF50022|SSF55961 AFA_13920 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000391|IPR032710 NTF2-like domain superfamily|Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 G3DSA:3.10.450.50|PF00866|SSF54427 AFA_13925 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017941|IPR036922 Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 G3DSA:2.102.10.10|PF00355|SSF50022 AFA_13930 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00081|PS00061|SSF51735 AFA_13935 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016156|IPR023753|IPR028202|IPR036188 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|FAD/NAD-linked reductase, dimerisation domain superfamily|Reductase, C-terminal GO:0016491|GO:0050660|GO:0055114 G3DSA:3.30.390.30|G3DSA:3.50.50.60|PF07992|PF14759|PR00368|PR00411|SSF51905|SSF55424 AFA_13940 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004183|IPR023789 2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase|Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0005506|GO:0006725|GO:0008198|GO:0016491|GO:0019439|GO:0047070|GO:0055114 MF_01653|PF02900|SSF53213 AFA_13945 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000073|IPR000639|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Epoxide hydrolase-like GO:0003824 G3DSA:3.40.50.1820|PF12697|PR00111|PR00412|SSF53474 AFA_13950 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011234|IPR036663 Fumarylacetoacetase-like, C-terminal|Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 G3DSA:3.90.850.10|PF01557|SSF56529 AFA_13955 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000534|IPR003361|IPR015426|IPR036291 Acetaldehyde dehydrogenase|Acetaldehyde dehydrogenase, C-terminal|NAD(P)-binding domain superfamily|Semialdehyde dehydrogenase, NAD-binding GO:0008774|GO:0016620|GO:0019439|GO:0051287|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_01657|PF01118|PF09290|PIRSF015689|SM00859|SSF51735|SSF55347|TIGR03215 AFA_13960 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000891|IPR012425|IPR013785|IPR017629 4-hydroxy-2-oxovalerate aldolase|Aldolase-type TIM barrel|DmpG-like communication|Pyruvate carboxyltransferase GO:0003824|GO:0008701|GO:0016833|GO:0019439 G3DSA:1.10.8.60|G3DSA:3.20.20.70|MF_01656|PD005364|PF00682|PF07836|SSF51569|SSF89000|TIGR03217 AFA_13965 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005829|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PS00216|PS00217|SSF103473 AFA_13980 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR020556|IPR023631|IPR036928 Amidase signature (AS) superfamily|Amidase signature domain|Amidase, conserved site G3DSA:3.90.1300.10|PF01425|PS00571|SSF75304 AFA_13985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR004839|IPR015421|IPR015422|IPR015424|IPR036388|IPR036390 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0003824|GO:0006355|GO:0009058|GO:0030170 G3DSA:1.10.10.10|G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PF00392|SM00345|SSF46785|SSF53383 AFA_13990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_14000 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000774|IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal|Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 G3DSA:1.10.287.460|PF01346 AFA_14005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735 AFA_14010 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR024501|IPR029058 Alpha/Beta hydrolase fold|Protein of unknown function DUF3141 PF11339|SSF53474 AFA_14015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002155|IPR016039|IPR020610|IPR020613|IPR020615|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|PS00737|SSF53901|TIGR01930 AFA_14020 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR011283|IPR020904|IPR036291 Acetoacetyl-CoA reductase|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0005737|GO:0016491|GO:0018454|GO:0042619|GO:0055114 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SM00822|SSF51735|TIGR01829 AFA_14025 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018968 Phasin PF09361 AFA_14030 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic PF12698 AFA_14035 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12698|PS00211|SM00382|SSF52540 AFA_14040 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.50.100|PF16576|SSF111369 AFA_14045 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003423|IPR010131 Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT GO:0015562|GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|SSF56954|TIGR01845 AFA_14050 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010941|IPR022211|IPR029058 Alpha/Beta hydrolase fold|Poly-beta-hydroxybutyrate polymerase N-terminal|Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 PF07167|PF12551|SSF53474 AFA_14055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001647|IPR009057|IPR011075|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily|Tetracycline transcriptional regulator, TetR-related, C-terminal GO:0003677 G3DSA:1.10.357.10|PF00440|PF16859|PR00455|SSF46689|SSF48498 AFA_14060 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003744 Queuosine precursor transporter GO:1990397 MF_02088|PF02592|TIGR00697 AFA_14065 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR014729|IPR018317 Queuosine biosynthesis protein QueC|Rossmann-like alpha/beta/alpha sandwich fold G3DSA:3.40.50.620|MF_01633|PF06508|PIRSF006293|SSF52402|TIGR00364 AFA_14070 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001085|IPR015421|IPR015422|IPR015424|IPR019798|IPR039429 Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Serine hydroxymethyltransferase|Serine hydroxymethyltransferase, pyridoxal phosphate binding site|Serine hydroxymethyltransferase-like domain GO:0003824|GO:0004372|GO:0019264|GO:0030170|GO:0035999 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00051|PF00464|PIRSF000412|PS00096|SSF53383 AFA_14075 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000192|IPR015421|IPR015422|IPR015424|IPR020578|IPR022278 Aminotransferase class V domain|Aminotransferase class-V, pyridoxal-phosphate binding site|Phosphoserine aminotransferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0004648|GO:0006564 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00160|PF00266|PIRSF000525|PS00595|SSF53383 AFA_14080 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR004839|IPR015421|IPR015424|IPR036388|IPR036390 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major domain|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0003824|GO:0006355|GO:0009058|GO:0030170 G3DSA:1.10.10.10|G3DSA:3.40.640.10|PF00155|PF00392|SM00345|SSF46785|SSF53383 AFA_14085 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001085|IPR015421|IPR015422|IPR015424|IPR039429 Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Serine hydroxymethyltransferase|Serine hydroxymethyltransferase-like domain GO:0003824|GO:0004372|GO:0019264|GO:0030170|GO:0035999 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00051|PF00464|PIRSF000412|SSF53383 AFA_14090 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012348|IPR025859 P-aminobenzoate N-oxygenase AurF|Ribonucleotide reductase-like GO:0016491|GO:0055114 G3DSA:1.10.620.20|PF11583 AFA_14095 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001041|IPR001433|IPR006058|IPR012675|IPR017938|IPR036010|IPR039261 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Oxidoreductase FAD/NAD(P)-binding|Riboflavin synthase-like beta-barrel GO:0009055|GO:0016491|GO:0051536|GO:0051537|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00111|PF00175|PS00197|SSF52343|SSF54292|SSF63380 AFA_14100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017926|IPR029062 Class I glutamine amidotransferase-like|Glutamine amidotransferase G3DSA:3.40.50.880|PF00117|SSF52317 AFA_14105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004625|IPR013749|IPR029056 Pyridoxamine kinase/Phosphomethylpyrimidine kinase|Pyridoxine kinase|Ribokinase-like GO:0008478|GO:0009443 G3DSA:3.40.1190.20|PF08543|SSF53613|TIGR00687 AFA_14110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000060|IPR018093 BCCT transporter family|BCCT transporter, conserved site GO:0016020|GO:0022857|GO:0071705 PF02028|PS01303|TIGR00842 AFA_14115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000551|IPR009061|IPR010211|IPR015358 MerR-type HTH domain|Putative DNA-binding domain superfamily|Redox-sensitive transcriptional activator SoxR|Transcription regulator MerR, DNA binding GO:0003677|GO:0006355|GO:0006979|GO:0051537 G3DSA:1.10.1660.10|PF00376|PF09278|PR00040|SM00422|SSF46955|TIGR01950 AFA_14120 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369|TIGR01730 AFA_14125 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001036|IPR027463 Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866 AFA_14130 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003423|IPR010131 Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT GO:0015562|GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|SSF56954|TIGR01845 AFA_14140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005561|IPR008327|IPR011006|IPR036388 ANTAR domain|CheY-like superfamily|Signal transduction response regulator, antiterminator|Winged helix-like DNA-binding domain superfamily GO:0003723 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF03861|PIRSF036382|SM01012|SSF52172 AFA_14145 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000709|IPR028082 Leu/Ile/Val-binding protein|Periplasmic binding protein-like I GO:0006865 G3DSA:3.40.50.2300|PF13433|PR00337|SSF53822 AFA_14150 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003211|IPR038523 AmiS/UreI transporter|AmiS/UreI transporter superfamily GO:0016020 G3DSA:1.25.40.600|PF02293 AFA_14155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 AFA_14165 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008168|IPR009056|IPR036909 Cytochrome c, class IC|Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0005506|GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF13442|PR00605|SSF46626 AFA_14170 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003468|IPR036909 Cytochrome c oxidase, monohaem subunit/FixO|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF02433|SSF46626 AFA_14175 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000883|IPR036927 Cytochrome c oxidase subunit I|Cytochrome c oxidase-like, subunit I superfamily GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 G3DSA:1.20.210.10|PF00115|SSF81442 AFA_14180 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR004839|IPR015421|IPR015422|IPR015424|IPR036388|IPR036390 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0003824|GO:0006355|GO:0009058|GO:0030170 G3DSA:1.10.10.10|G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PF00392|SM00345|SSF46785|SSF53383 AFA_14185 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR024311 Lipocalin-like domain PF13924 AFA_14190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 AFA_14195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005814|IPR015421|IPR015422|IPR015424 Aminotransferase class-III|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0008483|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00202|PIRSF000521|PS00600|SSF53383 AFA_14200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001920|IPR004391|IPR015942|IPR018187|IPR033134 Asp/Glu racemase|Asp/Glu racemase, active site 1|Asp/Glu racemase, active site 2|Asp/Glu/hydantoin racemase|Glutamate racemase GO:0006807|GO:0008881|GO:0009252|GO:0016855|GO:0036361 G3DSA:3.40.50.1860|MF_00258|PF01177|PS00923|PS00924|SSF53681|TIGR00067 AFA_14205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013320|IPR017849|IPR017850 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain superfamily|Concanavalin A-like lectin/glucanase domain superfamily GO:0003824 G3DSA:2.60.120.200|G3DSA:3.40.720.10|PF13385|SSF49899|SSF53649 AFA_14215 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007312|IPR008475|IPR017767|IPR017849 Alkaline phosphatase-like, alpha/beta/alpha|Bacterial phospholipase C, C-terminal domain|Bacterial phospholipase C, phosphocholine-specific|Phosphoesterase GO:0003824|GO:0004629|GO:0016042|GO:0016788|GO:0034480 G3DSA:3.40.720.10|PF04185|PF05506|TIGR03396 AFA_14225 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:3.30.1360.200 AFA_14230 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006664|IPR006665|IPR007450|IPR036737|IPR037873 BamE-like|Lipoprotein SmpA/OmlA|OmpA-like domain|OmpA-like domain superfamily|Outer membrane protein, bacterial GO:0009279|GO:0016021|GO:0019867 G3DSA:3.30.1330.60|G3DSA:3.30.1450.10|PF00691|PF04355|PR01021|PR01023|SSF103088 AFA_14235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005594|IPR008635|IPR008640|IPR011049|IPR024973 Coiled stalk of trimeric autotransporter adhesin|ESPR domain|Head domain of trimeric autotransporter adhesin|Serralysin-like metalloprotease, C-terminal|YadA-like, C-terminal GO:0009405|GO:0019867 G3DSA:1.20.5.170|G3DSA:1.20.5.340|G3DSA:2.150.10.10|G3DSA:2.20.25.490|G3DSA:2.60.40.4050|G3DSA:3.30.1300.30|G3DSA:3.30.390.90|PF03895|PF05658|PF05662|PF13018|SSF101967|SSF54523 AFA_14240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001633|IPR035919 EAL domain|EAL domain superfamily G3DSA:3.20.20.450|PF00563|SM00052|SSF141868 AFA_14245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006118|IPR006119|IPR036162 Recombinase, conserved site|Resolvase, N-terminal catalytic domain|Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 G3DSA:3.40.50.1390|PF00239|PS00397|PS00398|SM00857|SSF53041 AFA_14250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003004|IPR011850|IPR018076 General secretion pathway protein F|GspF/PilC family|Type II secretion system F domain GO:0008565|GO:0015627|GO:0015628 G3DSA:1.20.81.30|PF00482|PR00812|TIGR02120 AFA_14255 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001482|IPR003593|IPR013369|IPR027417|IPR037257 AAA+ ATPase domain|General secretory system II, protein E, N-terminal superfamily|P-loop containing nucleoside triphosphate hydrolase|Type II secretion system GspE|Type II/IV secretion system protein GO:0005524|GO:0008565|GO:0015627|GO:0015628 G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PS00662|SM00382|SSF160246|SSF52540|TIGR02533 AFA_14260 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001775|IPR004846|IPR005644|IPR013356|IPR038591 GspD/PilQ family|NolW-like|NolW-like superfamily|Type II secretion system GspD|Type II/III secretion system GO:0008565|GO:0009306|GO:0015627|GO:0015628|GO:0019867 G3DSA:3.30.1370.120|PF00263|PF03958|PR00811|TIGR02517 AFA_14265 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR022792 Type II secretion system, protein N PF01203 AFA_14270 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007690 Type II secretion system, protein M GO:0009306 PF04612 AFA_14275 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025691 GspL periplasmic domain PF12693|SSF53067 AFA_14280 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 PF03934|PIRSF002786|SSF54523 AFA_14285 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012902 Prokaryotic N-terminal methylation site PF07963|PS00409|SSF54523|TIGR02532 AFA_14290 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003413|IPR010052|IPR012902 Prokaryotic N-terminal methylation site|Type II secretion system protein I|Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 G3DSA:3.30.1300.30|PF02501|PF07963|PS00409|SSF54523|TIGR01707|TIGR02532 AFA_14295 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002416|IPR012902 Prokaryotic N-terminal methylation site|Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 PF07963|PS00409|SSF54523|TIGR01708|TIGR02532 AFA_14300 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000983|IPR010054|IPR012902|IPR013545 Bacterial general secretion pathway protein G-type pilin|General secretion pathway protein G|Prokaryotic N-terminal methylation site|Type II secretion system protein G GO:0008565|GO:0015627|GO:0015628 G3DSA:3.30.700.10|PF07963|PF08334|PR00813|PS00409|SSF54523|TIGR01710|TIGR02532 AFA_14310 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000644|IPR007065 CBS domain|HPP G3DSA:3.10.580.10|PF00571|PF04982|SM00116|SSF54631 AFA_14315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004360|IPR005956|IPR029068 4-hydroxyphenylpyruvate dioxygenase|Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain GO:0003868|GO:0009072|GO:0016701|GO:0055114 G3DSA:3.10.180.10|PF00903|PF14696|PIRSF009283|SSF54593|TIGR01263 AFA_14320 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002781 Transmembrane protein TauE-like GO:0016021 PF01925 AFA_14325 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000362|IPR008948|IPR018951|IPR020557|IPR022761|IPR024083 Fumarase C, C-terminal|Fumarase/histidase, N-terminal|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like GO:0003824|GO:0006099|GO:0016829 G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|PF00206|PF10415|PR00149|PS00163|SSF48557 AFA_14330 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR036388|IPR036390 MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01047|PR00598|SM00347|SSF46785 AFA_14335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021332 Protein of unknown function DUF2944 PF11161 AFA_14340 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000086|IPR015797|IPR020084|IPR029401 NUDIX hydrolase domain|NUDIX hydrolase, conserved site|NUDIX hydrolase-like domain superfamily|Nudix hydrolase, N-terminal GO:0016787 G3DSA:2.20.70.10|G3DSA:3.90.79.10|PF00293|PF14803|PS00893|SSF55811 AFA_14345 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004616|IPR016181 Acyl-CoA N-acyltransferase|Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 G3DSA:2.30.210.20|G3DSA:3.40.630.70|MF_00688|PF03588|SSF55729|TIGR00667 AFA_14350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007471|IPR007472|IPR016181|IPR017138 Acyl-CoA N-acyltransferase|Aspartate/glutamate leucyltransferase|N-end aminoacyl transferase, N-terminal|N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0008914|GO:0016598|GO:0071596 MF_00689|PF04376|PF04377|PIRSF037208|SSF55729 AFA_14355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001295|IPR005719|IPR005720|IPR012135|IPR013785 Aldolase-type TIM barrel|Dihydroorotate dehydrogenase domain|Dihydroorotate dehydrogenase, class 1/ 2|Dihydroorotate dehydrogenase, class 2|Dihydroorotate dehydrogenase, conserved site GO:0003824|GO:0004152|GO:0005737|GO:0006207|GO:0006222|GO:0016020|GO:0016627|GO:0055114 G3DSA:3.20.20.70|MF_00225|PF01180|PIRSF000164|PS00911|PS00912|SSF51395|TIGR01036 AFA_14360 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010127|IPR018968 Phasin|Phasin, subfamily 1 PF09361|TIGR01841 AFA_14365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 AFA_14370 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001453|IPR036425 MoaB/Mog domain|MoaB/Mog-like domain superfamily G3DSA:3.40.980.10|PF00994|SM00852|SSF53218 AFA_14375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic PF07264 AFA_14380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013766|IPR036249 Thioredoxin domain|Thioredoxin-like superfamily GO:0045454 G3DSA:3.40.30.10|PF00085|SSF52833 AFA_14385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000629|IPR001650|IPR011545|IPR014001|IPR027417 ATP-dependent RNA helicase DEAD-box, conserved site|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0003676|GO:0005524 G3DSA:3.40.50.300|PF00270|PF00271|PS00039|SM00487|SM00490|SSF52540 AFA_14390 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008407 Branched-chain amino acid transport, AzlD PF05437 AFA_14395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011606 Branched-chain amino acid transport, permease PF03591 AFA_14400 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR019401 Zinc finger, CHCC-type G3DSA:2.60.260.40|PF10276 AFA_14405 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000073|IPR012020|IPR029058 AB hydrolase 4 family|Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF00561|PIRSF005211|SSF53474 AFA_14410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001915|IPR011990 Peptidase M48|Tetratricopeptide-like helical domain superfamily GO:0004222|GO:0005515|GO:0006508 G3DSA:1.25.40.10|G3DSA:3.30.2010.10|PF01435|PF14559|SSF48452 AFA_14415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related PF09678 AFA_14430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002938|IPR010971|IPR018168|IPR036188 FAD-binding domain|FAD/NAD(P)-binding domain superfamily|Ubiquinone biosynthesis hydroxylase UbiH/COQ6|Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0006744|GO:0016709|GO:0050660|GO:0055114|GO:0071949 G3DSA:3.30.9.50|G3DSA:3.50.50.60|PF01494|PR00420|PS01304|SSF51905|TIGR01988 AFA_14435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001269|IPR004652|IPR013785|IPR018517|IPR024036|IPR032887 Aldolase-type TIM barrel|tRNA-dihydrouridine synthase|tRNA-dihydrouridine synthase B|tRNA-dihydrouridine synthase, TIM-barrel, NifR3|tRNA-dihydrouridine synthase, conserved site|tRNA-dihydrouridine synthase, putative, C-terminal GO:0002943|GO:0003824|GO:0008033|GO:0016491|GO:0017150|GO:0050660|GO:0055114 G3DSA:1.10.1200.80|G3DSA:3.20.20.70|MF_02042|PF01207|PIRSF006621|PS01136|SSF51395|TIGR00737 AFA_14440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002197|IPR005412|IPR009057 DNA binding HTH domain, Fis-type|DNA-binding protein Fis|Homeobox-like domain superfamily GO:0003677|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF02954|PIRSF002097|PR01590|SSF46689 AFA_14445 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002695|IPR011607|IPR016193|IPR024051|IPR036914 AICAR transformylase, duplicated domain superfamily|Bifunctional purine biosynthesis protein PurH-like|Cytidine deaminase-like|Methylglyoxal synthase-like domain|Methylglyoxal synthase-like domain superfamily GO:0003824|GO:0003937|GO:0004643|GO:0006164 G3DSA:3.40.140.20|G3DSA:3.40.50.1380|MF_00139|PF01808|PF02142|PIRSF000414|SM00798|SM00851|SSF52335|SSF53927|TIGR00355 AFA_14450 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002176|IPR012337|IPR020563|IPR036397 Crossover junction endodeoxyribonuclease RuvC|Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0004520|GO:0006281|GO:0006310|GO:0008821 G3DSA:3.30.420.10|MF_00034|PF02075|PR00696|PS01321|SSF53098|TIGR00228 AFA_14455 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000085|IPR003583|IPR010994|IPR011114|IPR012340|IPR013849|IPR036267 Bacterial DNA recombination protein RuvA|DNA helicase, Holliday junction RuvA type, domain I, bacterial|Helix-hairpin-helix DNA-binding motif, class 1|Holliday junction DNA helicase RuvA, C-terminal|Nucleic acid-binding, OB-fold|RuvA domain 2-like|RuvA, C-terminal domain superfamily GO:0003677|GO:0003678|GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 G3DSA:1.10.150.20|G3DSA:1.10.8.10|G3DSA:2.40.50.140|MF_00031|PF01330|PF07499|PF14520|SM00278|SSF46929|SSF47781|SSF50249|TIGR00084 AFA_14460 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001926|IPR027278|IPR036052 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase|Pyridoxal-phosphate dependent enzyme|Tryptophan synthase beta subunit-like PLP-dependent enzyme G3DSA:3.40.50.1100|PF00291|PIRSF006278|SSF53686 AFA_14465 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003593|IPR004605|IPR008823|IPR008824|IPR027417|IPR036388|IPR036390 AAA+ ATPase domain|DNA helicase, Holliday junction RuvB type|DNA helicase, Holliday junction RuvB type, C-terminal|Holliday junction DNA helicase ruvB, N-terminal|P-loop containing nucleoside triphosphate hydrolase|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 G3DSA:1.10.10.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|MF_00016|PD005323|PF05491|PF05496|SM00382|SSF46785|SSF52540|TIGR00635 AFA_14475 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002195|IPR004721|IPR006680|IPR032466 Amidohydrolase-related|Dihydroorotase homodimeric type|Dihydroorotase, conserved site|Metal-dependent hydrolase GO:0004151|GO:0016787|GO:0016812|GO:0019856 G3DSA:3.20.20.140|MF_00219|PF01979|PIRSF001237|PS00482|PS00483|SSF51556|TIGR00856 AFA_14480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003121|IPR019835|IPR036885 SWIB domain|SWIB/MDM2 domain|SWIB/MDM2 domain superfamily GO:0005515 G3DSA:1.10.245.10|PF02201|SM00151|SSF47592 AFA_14485 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002081|IPR005101|IPR006050|IPR014729|IPR018394|IPR036134|IPR036155 Cryptochrome/DNA photolyase class 1|Cryptochrome/DNA photolyase class 1, conserved site, C-terminal|Cryptochrome/DNA photolyase, FAD-binding domain|Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily|Cryptochrome/photolyase, N-terminal domain superfamily|DNA photolyase, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold G3DSA:1.10.579.10|G3DSA:1.25.40.80|G3DSA:3.40.50.620|PF00875|PF03441|PR00147|PS00394|PS00691|SSF48173|SSF52425 AFA_14530 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001763|IPR036873 Rhodanese-like domain|Rhodanese-like domain superfamily G3DSA:3.40.250.10|PF00581|SM00450|SSF52821 AFA_14535 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007272 Sulphur transport domain PF04143 AFA_14545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002569|IPR036509 Peptide methionine sulphoxide reductase MsrA|Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 G3DSA:3.30.1060.10|MF_01401|PF01625|SSF55068|TIGR00401 AFA_14550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 MF_01147|PF01790|PS01311|TIGR00544 AFA_14560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007838|IPR036192 Cell division protein ZapA-like|Cell division protein ZapA-like superfamily G3DSA:1.10.20.30|PF05164|SSF102829 AFA_14570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009936 Protein of unknown function DUF1468 PF07331 AFA_14575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002823 Protein of unknown function DUF112, transmembrane PF01970 AFA_14580 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_14585 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR008995|IPR013611|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 2 GO:0005524|GO:0016887|GO:0022857|GO:0043190|GO:0055085 G3DSA:2.40.50.100|G3DSA:2.40.50.140|G3DSA:3.40.50.300|PF00005|PF08402|PS00211|SM00382|SSF50331|SSF52540 AFA_14590 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:3.40.190.10|PF13343|SSF53850 AFA_14595 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002204|IPR006115|IPR008927|IPR013328|IPR015815|IPR029154|IPR036291 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|3-hydroxyisobutyrate dehydrogenase-related, conserved site|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0016491|GO:0050661|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|PS00895|SSF48179|SSF51735 AFA_14600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR003661|IPR004358|IPR013727|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal|Two-component sensor kinase, N-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PF08521|PR00344|SM00387|SM00388|SSF47384|SSF55874 AFA_14605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 AFA_14610 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000086|IPR015797|IPR020084|IPR020476|IPR022927 NUDIX hydrolase|NUDIX hydrolase domain|NUDIX hydrolase, conserved site|NUDIX hydrolase-like domain superfamily|RNA pyrophosphohydrolase RppH GO:0016787 G3DSA:3.90.79.10|MF_00298|PF00293|PR00502|PS00893|SSF55811 AFA_14615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002314|IPR002316|IPR004154|IPR004500|IPR007214|IPR023717|IPR036621|IPR036754 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)|Anticodon-binding|Anticodon-binding domain superfamily|Proline-tRNA ligase, class IIa|Prolyl-tRNA synthetase, class IIa, bacterial-type|Prolyl-tRNA synthetase, class IIa, type 1|YbaK/aminoacyl-tRNA synthetase-associated domain|YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0000166|GO:0002161|GO:0004812|GO:0004827|GO:0005524|GO:0005737|GO:0006418|GO:0006433 G3DSA:3.30.930.10|G3DSA:3.40.50.800|G3DSA:3.90.960.10|MF_01569|PF00587|PF03129|PF04073|PIRSF001535|PR01046|SSF52954|SSF55681|SSF55826|TIGR00409 AFA_14620 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006683|IPR006684|IPR014166|IPR029069 Acyl-CoA thioester hydrolase YbgC/YbaW family|HotDog domain superfamily|Thioesterase domain|Tol-Pal system-associated acyl-CoA thioesterase GO:0016787|GO:0016790 G3DSA:3.10.129.10|PF03061|PIRSF003230|SSF54637|TIGR00051|TIGR02799 AFA_14625 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002898|IPR014163 MotA/TolQ/ExbB proton channel|Tol-Pal system, TolQ GO:0016021|GO:0043213 MF_02202|PF01618|TIGR02796 AFA_14630 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003400|IPR014168 Biopolymer transport protein ExbD/TolR|Tol-Pal system protein TolR GO:0015031|GO:0016021|GO:0022857|GO:0055085 G3DSA:3.30.420.270|PF02472|TIGR02801 AFA_14635 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006260|IPR014161 Tol-Pal system, TolA|TonB/TolA, C-terminal GO:0005215|GO:0016021|GO:0043213 PF13103|SSF74653|TIGR01352|TIGR02794 AFA_14640 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007195|IPR011042|IPR011659|IPR014167|IPR036752 Six-bladed beta-propeller, TolB-like|Tol-Pal system protein TolB|TolB, N-terminal|TolB, N-terminal domain superfamily|WD40-like Beta Propeller GO:0015031|GO:0017038|GO:0042597 G3DSA:2.120.10.30|G3DSA:3.40.50.10070|MF_00671|PF04052|PF07676|SSF52964|SSF69304|TIGR02800 AFA_14645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006664|IPR006665|IPR014169|IPR036737|IPR039001 OmpA-like domain|OmpA-like domain superfamily|Outer membrane protein, bacterial|Peptidoglycan-associated lipoprotein|Peptidoglycan-associated lipoprotein, C-terminal GO:0009279|GO:0016021|GO:0051301 G3DSA:3.30.1330.60|MF_02204|PF00691|PR01021|SSF103088|TIGR02802 AFA_14650 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011990|IPR014162|IPR034706|IPR039565 Cell division coordinator CpoB|Cell division coordinator CpoB, C-terminal|Outer membrane lipoprotein BamD-like|Tetratricopeptide-like helical domain superfamily GO:0005515|GO:0051301 G3DSA:1.25.40.10|MF_02066|PF13525|SSF48452|TIGR02795 AFA_14655 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF12697|SSF53474 AFA_14660 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007410|IPR036182 Copper chaperone PCuAC|Copper chaperone PCuAC superfamily G3DSA:2.60.40.1890|PF04314|SSF110087 AFA_14665 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006683|IPR029069 HotDog domain superfamily|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637 AFA_14670 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 PF01554|PIRSF006603|TIGR00797 AFA_14675 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 G3DSA:3.40.50.2300|PF02608 AFA_14680 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_14685 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_14690 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_14695 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000612 Proteolipid membrane potential modulator GO:0016021 PF01679 AFA_14700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010190|IPR032094|IPR036291 Diaminopimelate dehydrogenase, Ddh|Meso-diaminopimelate D-dehydrogenase, C-terminal|NAD(P)-binding domain superfamily GO:0009089|GO:0047850 G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF16654|PIRSF025648|SSF51735|SSF55347|TIGR01921 AFA_14705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 PF01810|PIRSF006324 AFA_14710 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003702|IPR017821|IPR026888|IPR037171|IPR038460 Acetyl-CoA hydrolase/transferase|Acetyl-CoA hydrolase/transferase C-terminal domain|Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily|NagB/RpiA transferase-like|Succinate CoA transferase GO:0003824|GO:0006084|GO:0016740 G3DSA:3.40.1080.10|G3DSA:3.40.1080.20|PF02550|PF13336|SSF100950|TIGR03458 AFA_14715 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_14720 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:3.40.30.10 AFA_14725 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000103|IPR008255|IPR012081|IPR012336|IPR023753|IPR036188|IPR036249 Alkyl hydroperoxide reductase subunit F|FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|Pyridine nucleotide-disulphide oxidoreductase, class-II|Pyridine nucleotide-disulphide oxidoreductase, class-II, active site|Thioredoxin-like fold|Thioredoxin-like superfamily GO:0000302|GO:0008785|GO:0016491|GO:0050660|GO:0051287|GO:0055114 G3DSA:3.40.30.80|G3DSA:3.50.50.60|PF07992|PF13192|PIRSF000238|PR00368|PR00469|PS00573|SSF51905|SSF52833|TIGR03140 AFA_14730 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000866|IPR017559|IPR019479|IPR024706|IPR036249 Alkyl hydroperoxide reductase subunit C|Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant|Peroxiredoxin, AhpC-type|Peroxiredoxin, C-terminal|Thioredoxin-like superfamily GO:0006979|GO:0016209|GO:0016491|GO:0051920|GO:0055114 G3DSA:3.40.30.10|PF00578|PF10417|PIRSF000239|SSF52833|TIGR03137 AFA_14735 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR004839|IPR015421|IPR015422|IPR015424|IPR036388|IPR036390 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0003824|GO:0006355|GO:0009058|GO:0030170 G3DSA:1.10.10.10|G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PF00392|SM00345|SSF46785|SSF53383 AFA_14740 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 AFA_14745 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002500|IPR004511|IPR011798|IPR014729 Adenosine 5'-phosphosulphate reductase|Phosphoadenosine phosphosulphate reductase|Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase|Rossmann-like alpha/beta/alpha sandwich fold GO:0003824|GO:0004604|GO:0019344|GO:0019379|GO:0055114 G3DSA:3.40.50.620|PF01507|PIRSF000857|SSF52402|TIGR02055 AFA_14750 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002500|IPR011784|IPR014729 Phosphoadenosine phosphosulphate reductase|Rossmann-like alpha/beta/alpha sandwich fold|Sulphate adenylyltransferase, small subunit GO:0003824|GO:0004781|GO:0019419 G3DSA:3.40.50.620|PF01507|PIRSF002936|SSF52402|TIGR02039 AFA_14755 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000795|IPR009000|IPR009001|IPR011779|IPR027417|IPR031157 P-loop containing nucleoside triphosphate hydrolase|Sulphate adenylyltransferase, large subunit|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal|Translation protein, beta-barrel domain superfamily GO:0003924|GO:0005525|GO:0006790 G3DSA:2.40.30.10|G3DSA:3.40.50.300|PF00009|PR00315|PS00301|SSF50447|SSF50465|SSF52540|TIGR02034 AFA_14760 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002293|IPR004840|IPR004841 Amino acid permease, conserved site|Amino acid permease/ SLC12A domain|Amino acid/polyamine transporter I GO:0006865|GO:0016020|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1740.10|PF00324|PIRSF006060|PS00218 AFA_14765 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015590|IPR016161|IPR016162|IPR016163|IPR029510 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00687|SSF53720 AFA_14770 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006076|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|PR00411|SSF51905 AFA_14775 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009770 Domain of unknown function DUF1338 G3DSA:3.10.180.80|PF07063|SM01150 AFA_14780 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_14785 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000890|IPR004372|IPR023865 Acetate/propionate kinase|Aliphatic acid kinase, short-chain|Aliphatic acid kinase, short-chain, conserved site GO:0005622|GO:0006082|GO:0016301|GO:0016310|GO:0016774 G3DSA:3.30.420.40|MF_00020|PF00871|PIRSF000722|PR00471|PS01075|PS01076|SSF53067|TIGR00016 AFA_14790 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002505|IPR012147 Phosphate acetyl/butaryl transferase|Phosphate acetyl/butyryltransferase GO:0016746 G3DSA:3.40.718.10|PF01515|PIRSF000428|SSF53659 AFA_14795 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009783|IPR032710 NTF2-like domain superfamily|Protein of unknown function DUF1348 G3DSA:3.10.450.50|PF07080|SSF54427 AFA_14800 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_14805 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003829|IPR011051|IPR012093|IPR014710 Pirin|Pirin, N-terminal domain|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF02678|PIRSF006232|SSF51182 AFA_14810 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000160|IPR029787 GGDEF domain|Nucleotide cyclase G3DSA:3.30.70.270|PF00990|SM00267|SSF55073|TIGR00254 AFA_14815 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR020556|IPR023631|IPR036928 Amidase signature (AS) superfamily|Amidase signature domain|Amidase, conserved site G3DSA:3.90.1300.10|PF01425|PS00571|SSF75304 AFA_14825 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011032|IPR018369|IPR020818|IPR037124 Chaperonin GroES, conserved site|GroES chaperonin family|GroES chaperonin superfamily|GroES-like superfamily GO:0005524|GO:0005737|GO:0006457 G3DSA:2.30.33.40|MF_00580|PF00166|PR00297|PS00681|SM00883|SSF50129 AFA_14830 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001844|IPR002423|IPR018370|IPR027409|IPR027410|IPR027413 Chaperonin Cpn60|Chaperonin Cpn60, conserved site|Chaperonin Cpn60/TCP-1 family|GroEL-like apical domain superfamily|GroEL-like equatorial domain superfamily|TCP-1-like chaperonin intermediate domain superfamily GO:0005524|GO:0005737|GO:0006457|GO:0042026 G3DSA:1.10.560.10|G3DSA:3.30.260.10|G3DSA:3.50.7.10|MF_00600|PF00118|PR00298|PS00296|SSF48592|SSF52029|SSF54849|TIGR02348 AFA_14835 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000829|IPR036945 DAGK family|Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0008654|GO:0016020|GO:0016301 G3DSA:1.10.3830.10|PF01219 AFA_14840 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001754|IPR011060|IPR011995|IPR013785|IPR018089 Aldolase-type TIM barrel|Orotidine 5'-phosphate decarboxylase domain|Orotidine 5'-phosphate decarboxylase, active site|Orotidine 5'-phosphate decarboxylase, type 2|Ribulose-phosphate binding barrel GO:0003824|GO:0004590|GO:0006207|GO:0006221 G3DSA:3.20.20.70|MF_01215|PF00215|PS00156|SM00934|SSF51366|TIGR02127 AFA_14845 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 AFA_14850 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_14855 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 AFA_14860 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008136|IPR036653 CinA, C-terminal|CinA-like, C-terminal G3DSA:3.90.950.20|PF02464|SSF142433|TIGR00199 AFA_14865 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007686|IPR026037|IPR036681 PgpA-like superfamily|Phosphatidylglycerophosphatase A|YutG/PgpA domain GO:0006629|GO:0008962 PF04608|PIRSF006162|SSF101307 AFA_14870 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006283|IPR010918|IPR016188|IPR036676|IPR036921 PurM-like, C-terminal domain|PurM-like, C-terminal domain superfamily|PurM-like, N-terminal domain|PurM-like, N-terminal domain superfamily|Thiamine-monophosphate kinase GO:0009030|GO:0009228 G3DSA:3.30.1330.10|G3DSA:3.90.650.10|MF_02128|PF00586|PF02769|PIRSF005303|SSF55326|SSF56042|TIGR01379 AFA_14875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006027|IPR011605|IPR035926 NusB antitermination factor|NusB-like superfamily|NusB/RsmB/TIM44 GO:0003723|GO:0006353|GO:0006355 G3DSA:1.10.940.10|MF_00073|PF01029|SSF48013|TIGR01951 AFA_14880 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002180|IPR034964|IPR036467 Lumazine synthase|Lumazine/riboflavin synthase|Lumazine/riboflavin synthase superfamily GO:0000906|GO:0009231|GO:0009349 G3DSA:3.40.50.960|MF_00178|PF00885|SSF52121|TIGR00114 AFA_14885 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000422|IPR017945|IPR032677|IPR036144 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB|DHBP synthase RibB-like alpha/beta domain superfamily|GTP cyclohydrolase II|RibA-like superfamily GO:0008686|GO:0009231 G3DSA:3.40.50.10990|G3DSA:3.90.870.10|MF_00180|PF00925|PF00926|PIRSF001259|SSF142695|SSF55821|TIGR00506 AFA_14890 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 AFA_14895 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007899|IPR023577|IPR033469|IPR038186 CHAD domain|CHAD domain superfamily|CYTH domain|CYTH-like domain superfamily G3DSA:1.40.20.10|G3DSA:2.40.320.10|PD009560|PF01928|PF05235|SM00880|SM01118|SSF55154 AFA_14900 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000897|IPR003593|IPR004390|IPR013822|IPR027417|IPR036225 AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase|SRP/SRP receptor, N-terminal|Signal recognition particle, SRP54 subunit, GTPase domain|Signal recognition particle, SRP54 subunit, helical bundle|Signal-recognition particle receptor FtsY GO:0005525|GO:0006614 G3DSA:1.20.120.140|G3DSA:3.40.50.300|MF_00920|PF00448|PF02881|SM00382|SM00962|SM00963|SSF47364|SSF52540|TIGR00064 AFA_14905 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002052|IPR004398|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|RNA methyltransferase, RsmD|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0008168|GO:0031167|GO:0032259 G3DSA:3.40.50.150|PF03602|PIRSF004553|PS00092|SSF53335|TIGR00095 AFA_14910 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001980|IPR004821|IPR014729 Cytidyltransferase-like domain|Phosphopantetheine adenylyltransferase|Rossmann-like alpha/beta/alpha sandwich fold GO:0003824|GO:0004595|GO:0009058|GO:0015937 G3DSA:3.40.50.620|MF_00151|PD016147|PF01467|PR01020|SSF52374|TIGR00125|TIGR01510 AFA_14915 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain G3DSA:3.30.70.20|PF00037|PS00198|SSF54862 AFA_14920 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005303 MOSC, N-terminal beta barrel PF03476|SSF141673 AFA_14925 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007844 AsmA PF05170 AFA_14930 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000277|IPR006235|IPR015421|IPR015422|IPR015424 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme|O-acetylhomoserine/O-acetylserine sulfhydrylase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0006520|GO:0016765|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01053|PIRSF001434|PS00868|SSF53383|TIGR01326 AFA_14935 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009282|IPR027405 Protein of unknown function DUF937|YidB-like G3DSA:1.10.10.690|PF06078|SSF140804 AFA_14940 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003462|IPR023401|IPR036291 NAD(P)-binding domain superfamily|Ornithine cyclodeaminase, N-terminal|Ornithine cyclodeaminase/mu-crystallin G3DSA:3.30.1780.10|G3DSA:3.40.50.720|PF02423|PIRSF001439|SSF51735 AFA_14945 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009875|IPR009926|IPR012349|IPR023787 FMN-binding split barrel|PilZ domain|Type III secretion system flagellar brake protein YcgR|Type III secretion system flagellar brake protein YcgR, N-terminal GO:0035438|GO:0048037|GO:0071945 G3DSA:2.30.110.10|G3DSA:2.40.10.220|MF_01457|PF07238|PF07317 AFA_14950 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025877|IPR029044 MobA-like NTP transferase|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF12804|SSF53448 AFA_14955 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005546|IPR036709 Autotransporter beta-domain|Autotransporter beta-domain superfamily G3DSA:2.40.128.130|PF03797|SM00869|SSF103515 AFA_14960 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000868|IPR036380 Isochorismatase-like|Isochorismatase-like superfamily GO:0003824 G3DSA:3.40.50.850|PF00857|SSF52499 AFA_14965 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic SSF144052 AFA_14970 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF00561|SSF53474 AFA_14975 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000674|IPR008274|IPR012368|IPR036856|IPR037165 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead|Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily|Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding|Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily|Oxidoreductase molybdopterin-binding subunit, IorB-related GO:0016491|GO:0055114 G3DSA:3.30.365.10|G3DSA:3.90.1170.50|PF02738|PIRSF036389|SM01008|SSF54665|SSF56003 AFA_14980 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001041|IPR002888|IPR006058|IPR012675|IPR036010|IPR036884 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|[2Fe-2S]-binding|[2Fe-2S]-binding domain superfamily GO:0009055|GO:0016491|GO:0046872|GO:0051536|GO:0051537|GO:0055114 G3DSA:1.10.150.120|G3DSA:3.10.20.30|PF00111|PF01799|PS00197|SSF47741|SSF54292 AFA_14985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000674|IPR009056|IPR036856|IPR036909|IPR037165 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead|Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily|Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily|Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0009055|GO:0016491|GO:0020037|GO:0055114 G3DSA:1.10.760.10|G3DSA:3.30.365.10|PF00034|PF13442|SM01008|SSF46626|SSF54665|SSF56003 AFA_14990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010323|IPR011990 Protein of unknown function DUF924|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.20.58.320|G3DSA:1.25.40.10|PF06041|SSF48452 AFA_14995 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_15000 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR027417 AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SM00382|SSF52540 AFA_15005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_15010 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000709|IPR028081|IPR028082 Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I GO:0006865 G3DSA:3.40.50.2300|PF13458|PR00337|SSF53822 AFA_15015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002692|IPR014395|IPR023343|IPR029055 Nucleophile aminohydrolases, N-terminal|Penicillin amidase type, domain 1|Penicillin/GL-7-ACA/AHL acylase|Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0016811|GO:0017000 G3DSA:1.10.1400.10|G3DSA:1.10.287.150|G3DSA:1.10.439.10|G3DSA:2.30.120.10|G3DSA:3.60.20.10|PF01804|PIRSF001227|SSF56235 AFA_15020 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000160|IPR029787 GGDEF domain|Nucleotide cyclase G3DSA:3.30.70.270|PF00990|SM00267|SSF55073|TIGR00254 AFA_15025 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 AFA_15030 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000917|IPR017849|IPR017850 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain superfamily|Sulfatase, N-terminal GO:0003824|GO:0008484 G3DSA:3.40.720.10|PF00884|SSF53649 AFA_15035 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_15040 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_15045 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001279|IPR013471|IPR036866 Metallo-beta-lactamase|Ribonuclease Z/BN|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like GO:0016891|GO:0042779 G3DSA:3.60.15.10|MF_01818|PF12706|SM00849|SSF56281 AFA_15050 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR011663|IPR028978|IPR036388|IPR036390 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|SM00345|SM00866|SSF46785|SSF64288 AFA_15055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005158|IPR011990|IPR016032|IPR019734|IPR027417 Bacterial transcriptional activator domain|P-loop containing nucleoside triphosphate hydrolase|Signal transduction response regulator, C-terminal effector|Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0003677|GO:0005515|GO:0006355 G3DSA:1.25.40.10|PF03704|PF13191|SM00028|SM01043|SSF46894|SSF48452|SSF52540 AFA_15060 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001736|IPR025202 Phospholipase D-like domain|Phospholipase D/Transphosphatidylase GO:0003824 G3DSA:3.30.870.10|PF13091|SM00155|SSF56024 AFA_15065 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 AFA_15070 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000631|IPR004443|IPR017953|IPR029056|IPR030677|IPR036652 ATP-dependent (S)-NAD(P)H-hydrate dehydratase|Bifunctional NAD(P)H-hydrate repair enzyme Nnr|Carbohydrate kinase, predicted, conserved site|Ribokinase-like|YjeF N-terminal domain|YjeF N-terminal domain superfamily GO:0052855 G3DSA:3.40.1190.20|G3DSA:3.40.50.10260|MF_01965|MF_01966|PF01256|PF03853|PIRSF017184|PS01050|SSF53613|SSF64153|TIGR00196|TIGR00197 AFA_15075 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003777|IPR027051 XdhC Rossmann domain|XdhC- CoxI G3DSA:3.40.50.720|PF02625|PF13478 AFA_15080 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit PF06808 AFA_15085 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_15090 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001041|IPR002888|IPR006058|IPR010419|IPR012675|IPR023393|IPR036010|IPR036884 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|Carbon monoxide dehydrogenase subunit G|START-like domain superfamily|[2Fe-2S]-binding|[2Fe-2S]-binding domain superfamily GO:0009055|GO:0016491|GO:0046872|GO:0051536|GO:0051537|GO:0055114 G3DSA:1.10.150.120|G3DSA:3.10.20.30|G3DSA:3.30.530.20|PF00111|PF01799|PF06240|PS00197|SSF47741|SSF54292|SSF55961 AFA_15095 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002346|IPR016167|IPR016169|IPR036318|IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily|FAD-binding, type PCMH, subdomain 1|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0050660|GO:0055114 G3DSA:3.30.43.10|G3DSA:3.30.465.10|PF00941|SSF55447|SSF56176 AFA_15100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000674|IPR008274|IPR036856|IPR037165 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead|Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily|Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding|Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.365.10|G3DSA:3.90.1170.50|PF01315|PF02738|SM01008|SSF54665|SSF56003 AFA_15105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018389|IPR026289|IPR038404 Solute binding protein, mannitol/chloroaromatic system-like|TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 G3DSA:3.40.190.10|G3DSA:3.40.190.170|PF03480|PIRSF039026 AFA_15110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017941|IPR036922 Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 G3DSA:2.102.10.10|PF00355|SSF50022 AFA_15115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016156|IPR023753|IPR028202|IPR036188 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|FAD/NAD-linked reductase, dimerisation domain superfamily|Reductase, C-terminal GO:0016491|GO:0050660|GO:0055114 G3DSA:3.30.390.30|G3DSA:3.50.50.60|PF07992|PF14759|PR00368|PR00411|SSF51905|SSF55424 AFA_15120 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001663|IPR015879|IPR015881|IPR017941|IPR036922 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site|Aromatic-ring-hydroxylating dioxygenase, alpha subunit|Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain|Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0005506|GO:0016491|GO:0044237|GO:0051537|GO:0055114 G3DSA:2.102.10.10|G3DSA:3.90.380.10|PF00355|PF00848|PR00090|PS00570|SSF50022|SSF55961 AFA_15125 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000391|IPR032710 NTF2-like domain superfamily|Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 G3DSA:3.10.450.50|PF00866|SSF54427 AFA_15130 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000868|IPR036380 Isochorismatase-like|Isochorismatase-like superfamily GO:0003824 G3DSA:3.40.50.850|PF00857|SSF52499 AFA_15135 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic SSF144052 AFA_15140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF00561|SSF53474 AFA_15145 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006680|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase GO:0016787 G3DSA:3.20.20.140|PF04909|SSF51556 AFA_15150 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR036388|IPR036390 MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01047|PR00598|SM00347|SSF46785 AFA_15155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR027417 AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SM00382|SSF52540 AFA_15160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000522|IPR037294 ABC transporter, BtuC-like|ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 G3DSA:1.10.3470.10|PF01032|SSF81345 AFA_15165 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002491 ABC transporter periplasmic binding domain G3DSA:1.20.58.2180|G3DSA:3.40.50.1980|PF01497|SSF53807 AFA_15170 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935 AFA_15175 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006160 Short chain fatty acid transporter AtoE PF02667 AFA_15190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006054|IPR006309|IPR012337|IPR013520|IPR036397 DNA polymerase 3, epsilon subunit|DNA polymerase III epsilon subunit, exonuclease domain|Exonuclease, RNase T/DNA polymerase III|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0003677|GO:0003887|GO:0006260 G3DSA:3.30.420.10|PF00929|SM00479|SSF53098|TIGR00573|TIGR01406 AFA_15195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001036|IPR027463 Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866 AFA_15200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369|TIGR01730 AFA_15205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002156|IPR012337|IPR022892|IPR036397 Ribonuclease H domain|Ribonuclease H superfamily|Ribonuclease H-like superfamily|Ribonuclease HI GO:0003676|GO:0004523 G3DSA:3.30.420.10|MF_00042|PF00075|SSF53098 AFA_15210 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013216|IPR029063 Methyltransferase type 11|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168 G3DSA:3.40.50.150|PF08241|SSF53335 AFA_15215 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001279|IPR017782|IPR032282|IPR036866 Hydroxyacylglutathione hydrolase|Hydroxyacylglutathione hydrolase, C-terminal domain|Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like GO:0004416|GO:0019243 G3DSA:3.60.15.10|MF_01374|PF00753|PF16123|PIRSF005457|SM00849|SSF56281|TIGR03413 AFA_15220 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000189|IPR008258|IPR018392|IPR023346|IPR036779 LysM domain|LysM domain superfamily|Lysozyme-like domain superfamily|Prokaryotic transglycosylase, active site|Transglycosylase SLT domain 1 GO:0000270|GO:0008933|GO:0016020 G3DSA:1.10.530.10|G3DSA:3.10.350.10|PF01464|PF01476|PS00922|SM00257|SSF53955|SSF54106 AFA_15225 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR014358|IPR036291 Enoyl-[acyl-carrier-protein] reductase (NADH)|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR GO:0004318|GO:0006633|GO:0055114 G3DSA:3.40.50.720|PF13561|PIRSF000094|PR00081|SSF51735 AFA_15230 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR002078|IPR002197|IPR003593|IPR009057|IPR011006|IPR025662|IPR025944|IPR027417 AAA+ ATPase domain|CheY-like superfamily|DNA binding HTH domain, Fis-type|Homeobox-like domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, conserved site|Signal transduction response regulator, receiver domain GO:0000160|GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.40.50.2300|G3DSA:3.40.50.300|PF00072|PF00158|PF02954|PS00675|PS00688|SM00382|SM00448|SSF46689|SSF52172|SSF52540 AFA_15235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR003661|IPR004358|IPR017055|IPR029151|IPR033479|IPR036097|IPR036890 Double Cache domain 1|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Periplasmic sensor-like domain superfamily|Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator)|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF02518|PF02743|PIRSF036431|PR00344|SM00387|SM00388|SSF103190|SSF47384|SSF55874 AFA_15240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001991|IPR018107|IPR023954|IPR036458 C4-dicarboxylate transport protein|Sodium:dicarboxylate symporter|Sodium:dicarboxylate symporter superfamily|Sodium:dicarboxylate symporter, conserved site GO:0006835|GO:0015293|GO:0016021 G3DSA:1.10.3860.10|MF_01300|PF00375|PR00173|PS00713|PS00714|SSF118215 AFA_15245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004045|IPR036249|IPR036282 Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF13410|PF13417|SSF47616|SSF52833 AFA_15250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001763|IPR020936|IPR036873 Rhodanese-like domain|Rhodanese-like domain superfamily|Uncharacterised protein family UPF0176 G3DSA:3.30.70.100|G3DSA:3.40.250.10|MF_00469|PF00581|SM00450|SSF52821 AFA_15255 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007404 LexA-binding, inner membrane-associated putative hydrolase PF04307 AFA_15260 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025433 Domain of unknown function DUF4168 PF13767 AFA_15265 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007332 Protein of unknown function DUF411 PF04214 AFA_15270 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007214|IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain|YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 G3DSA:3.90.960.10|PF04073|SSF55826 AFA_15275 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010300|IPR011051|IPR014710 Cysteine dioxygenase type I|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold GO:0005506|GO:0016702|GO:0055114 G3DSA:2.60.120.10|PF05995|SSF51182 AFA_15280 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001753|IPR014748|IPR018376|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|SSF52096 AFA_15285 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003781|IPR013815|IPR016102|IPR032875|IPR036291 ATP-grasp fold, subdomain 1|CoA-binding|NAD(P)-binding domain superfamily|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain GO:0005524|GO:0048037 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.261|G3DSA:3.40.50.720|PF13380|PF13549|PF13607|SM00881|SSF51735|SSF52210|SSF56059 AFA_15290 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_15295 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011032|IPR013149|IPR014188|IPR020843|IPR036291 Acrylyl-CoA reductase AcuI|Alcohol dehydrogenase, C-terminal|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|SM00829|SSF50129|SSF51735|TIGR02823 AFA_15300 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 AFA_15305 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001753|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:3.90.226.10|PF00378|SSF52096 AFA_15310 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 AFA_15315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018912 Protein of unknown function DUF2478 PF10649 AFA_15320 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002364|IPR011032|IPR013154|IPR014182|IPR020843|IPR036291 Alcohol dehydrogenase, N-terminal|Alcohol dehydrogenase, zinc-binding type 1|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain|Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF08240|PF13602|PS01162|SM00829|SSF50129|SSF51735|TIGR02817 AFA_15325 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001155|IPR013785 Aldolase-type TIM barrel|NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0003824|GO:0010181|GO:0016491|GO:0055114 G3DSA:3.20.20.70|PF00724|SSF51395 AFA_15330 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 AFA_15335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013320|IPR017849|IPR017850 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain superfamily|Concanavalin A-like lectin/glucanase domain superfamily GO:0003824 G3DSA:2.60.120.200|G3DSA:3.40.720.10|SSF49899|SSF53649 AFA_15345 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007312|IPR008475|IPR017767|IPR017849 Alkaline phosphatase-like, alpha/beta/alpha|Bacterial phospholipase C, C-terminal domain|Bacterial phospholipase C, phosphocholine-specific|Phosphoesterase GO:0003824|GO:0004629|GO:0016042|GO:0016788|GO:0034480 G3DSA:3.40.720.10|PF04185|PF05506|TIGR03396 AFA_15350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 AFA_15355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006323|IPR006439|IPR023198|IPR023214|IPR036412 HAD hydrolase, subfamily IA|HAD superfamily|HAD-like superfamily|Phosphoglycolate phosphatase-like, domain 2|Phosphonoacetaldehyde hydrolase GO:0016787|GO:0019700|GO:0050194 G3DSA:1.10.150.240|G3DSA:3.40.50.1000|MF_01375|PF13419|SSF56784|TIGR01422|TIGR01509 AFA_15360 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001670|IPR017775|IPR018211 Alcohol dehydrogenase, iron-type, phosphonate metabolism-associated|Alcohol dehydrogenase, iron-type, conserved site|Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 G3DSA:1.20.1090.10|G3DSA:3.40.50.1970|PF00465|PS00913|SSF56796|TIGR03405 AFA_15365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR005769|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|ABC transporter, permease PhnE/PtxC|MetI-like superfamily GO:0005887|GO:0015604|GO:0015716|GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01097 AFA_15370 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR012693|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter, phosphonate import, PhnC|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015416|GO:0015716|GO:0016020|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR02315 AFA_15375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001638|IPR005770|IPR017797 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein|Phosphonate ABC transporter, substrate-binding protein|Solute-binding protein family 3/N-terminal domain of MltF GO:0015716|GO:0043190|GO:0055085 G3DSA:3.40.190.10|PF12974|SM00062|SSF53850|TIGR01098|TIGR03431 AFA_15380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_15385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 AFA_15395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR032466 Metal-dependent hydrolase G3DSA:3.20.20.140|SSF51556 AFA_15400 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 PF01810|PIRSF006324 AFA_15405 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_15410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001845|IPR036388|IPR036390 HTH ArsR-type DNA-binding domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF12840|PR00778|SM00418|SSF46785 AFA_15415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PF02040|PR00758|TIGR00935 AFA_15420 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006659|IPR006660|IPR036249 Arsenate reductase|Arsenate reductase-like|Thioredoxin-like superfamily GO:0008794|GO:0055114 G3DSA:3.40.30.10|PF03960|SSF52833|TIGR00014 AFA_15425 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005025|IPR014063|IPR029039 Arsenate resistance ArsH|Flavoprotein-like superfamily|NADPH-dependent FMN reductase-like GO:0016491 G3DSA:3.40.50.360|PF03358|SSF52218|TIGR02690 AFA_15430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 AFA_15435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR003661|IPR004358|IPR013727|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal|Two-component sensor kinase, N-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PF08521|PR00344|SM00387|SM00388|SSF47384|SSF55874 AFA_15440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005220|IPR036700 Bacterial OB-fold|Bacterial OB-fold superfamily G3DSA:2.40.50.200|PF04076|SSF101756 AFA_15450 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000277|IPR015421|IPR015422|IPR015424 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01053|PIRSF001434|SSF53383 AFA_15455 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_15460 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016084 Haem oxygenase-like, multi-helical G3DSA:1.20.910.10|PF14518|SM01236|SSF48613 AFA_15465 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF00583|SSF55729 AFA_15470 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002818|IPR009057|IPR018060|IPR029062 Class I glutamine amidotransferase-like|DJ-1/PfpI|DNA binding HTH domain, AraC-type|Homeobox-like domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:3.40.50.880|PF01965|PF12833|SM00342|SSF46689|SSF52317 AFA_15480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002125|IPR002734|IPR004794|IPR011549|IPR016192|IPR016193|IPR024072 APOBEC/CMP deaminase, zinc-binding|Bacterial bifunctional deaminase-reductase, C-terminal|Cytidine and deoxycytidylate deaminase domain|Cytidine deaminase-like|Dihydrofolate reductase-like domain superfamily|Riboflavin biosynthesis protein RibD|Riboflavin-specific deaminase, C-terminal GO:0003824|GO:0008270|GO:0008703|GO:0008835|GO:0009231|GO:0016787|GO:0050661|GO:0055114 G3DSA:3.40.140.10|G3DSA:3.40.430.10|PF00383|PF01872|PIRSF006769|PS00903|SSF53597|SSF53927|TIGR00227|TIGR00326 AFA_15485 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003796|IPR005144 ATP-cone domain|Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 MF_00440|PF03477|TIGR00244 AFA_15490 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001085|IPR015421|IPR015422|IPR015424|IPR019798|IPR039429 Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Serine hydroxymethyltransferase|Serine hydroxymethyltransferase, pyridoxal phosphate binding site|Serine hydroxymethyltransferase-like domain GO:0003824|GO:0004372|GO:0019264|GO:0030170|GO:0035999 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00051|PF00464|PIRSF000412|PS00096|SSF53383 AFA_15495 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005247|IPR008914|IPR036610 PEBP-like superfamily|Phosphatidylethanolamine-binding protein|YbhB/YbcL G3DSA:3.90.280.10|PF01161|SSF49777|TIGR00481 AFA_15500 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001412|IPR002305|IPR002307|IPR002942|IPR014729|IPR024108|IPR036986 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ic|RNA-binding S4 domain|RNA-binding S4 domain superfamily|Rossmann-like alpha/beta/alpha sandwich fold|Tyrosine-tRNA ligase|Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0000166|GO:0003723|GO:0004812|GO:0004831|GO:0005524|GO:0005737|GO:0006418|GO:0006437 G3DSA:1.10.240.10|G3DSA:3.10.290.10|G3DSA:3.40.50.620|MF_02007|PF00579|PF01479|PR01040|PS00178|SM00363|SSF52374|SSF55174|TIGR00234 AFA_15505 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011055|IPR016047 Duplicated hybrid motif|Peptidase M23 G3DSA:2.70.70.10|G3DSA:3.10.450.350|PF01551|SSF51261 AFA_15510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 G3DSA:3.30.420.40|MF_01270|PF03702|SSF53067 AFA_15515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018742 Protein of unknown function DUF2290 PF10053 AFA_15520 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR027417|IPR027785 P-loop containing nucleoside triphosphate hydrolase|UvrD-like helicase C-terminal domain G3DSA:3.40.50.300|PF13538|SSF52540 AFA_15525 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000361|IPR016092|IPR017870|IPR023063|IPR035903 FeS cluster biogenesis|FeS cluster insertion protein|FeS cluster insertion protein ErpA|FeS cluster insertion, C-terminal, conserved site|HesB-like domain superfamily GO:0005198|GO:0051536|GO:0097428 G3DSA:2.60.300.12|MF_01380|PF01521|PS01152|SSF89360|TIGR00049 AFA_15535 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000534|IPR000706|IPR012280|IPR023013|IPR036291 N-acetyl-gamma-glutamyl-phosphate reductase, active site|N-acetyl-gamma-glutamyl-phosphate reductase, type 1|NAD(P)-binding domain superfamily|Semialdehyde dehydrogenase, NAD-binding|Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0006526|GO:0008652|GO:0016620|GO:0046983|GO:0051287|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_00150|PF01118|PF02774|PS01224|SM00859|SSF51735|SSF55347|TIGR01850 AFA_15540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000754|IPR014721|IPR020568|IPR020574|IPR023035 Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Ribosomal protein S9|Ribosomal protein S9, bacterial/plastid|Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 G3DSA:3.30.230.10|MF_00532_B|PF00380|PS00360|SSF54211 AFA_15545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005822|IPR005823|IPR036899 Ribosomal protein L13|Ribosomal protein L13 superfamily|Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 G3DSA:3.90.1180.10|MF_01366|PF00572|PIRSF002181|SSF52161|TIGR01066 AFA_15550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018389|IPR026289|IPR038404 Solute binding protein, mannitol/chloroaromatic system-like|TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 G3DSA:3.40.190.10|G3DSA:3.40.190.170|PF03480|PIRSF039026 AFA_15555 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002510|IPR035068|IPR036059 Metalloprotease TldD/PmbA|Metalloprotease TldD/PmbA superfamily|Metalloprotease TldD/PmbA, N-terminal GO:0006508|GO:0008237 G3DSA:3.30.2290.10|PF01523|SSF111283 AFA_15560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006839|IPR023153 PSPTO4464-like domain superfamily|Ribosome-associated, YjgA G3DSA:1.10.60.30|PF04751|PIRSF016183|SSF158710 AFA_15565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003140|IPR029058 Alpha/Beta hydrolase fold|Phospholipase/carboxylesterase/thioesterase GO:0016787 G3DSA:3.40.50.1820|PF02230|SSF53474 AFA_15570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000383|IPR005674|IPR008979|IPR013736|IPR029058 Alpha/Beta hydrolase fold|CocE/Serine esterase|Galactose-binding-like domain superfamily|Xaa-Pro dipeptidyl-peptidase, C-terminal|Xaa-Pro dipeptidyl-peptidase-like domain GO:0008239|GO:0016787 G3DSA:1.10.3020.10|G3DSA:2.60.120.260|G3DSA:3.40.50.1820|PF02129|PF08530|SM00939|SSF49785|SSF53474|TIGR00976 AFA_15575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR016102|IPR016181|IPR032875 Acyl-CoA N-acyltransferase|GNAT domain|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain G3DSA:3.30.470.20|G3DSA:3.40.50.261|G3DSA:3.40.630.30|PF13302|PF13549|PF13607|SSF52210|SSF55729 AFA_15580 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001757|IPR004014|IPR006068|IPR006415|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299|IPR036412 Cation-transporting P-type ATPase, C-terminal|Cation-transporting P-type ATPase, N-terminal|HAD superfamily|HAD-like superfamily|P-type ATPase|P-type ATPase, A domain superfamily|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IIIB|P-type ATPase, transmembrane domain superfamily GO:0000166|GO:0015444|GO:0015693|GO:0016021 G3DSA:1.20.1110.10|G3DSA:2.70.150.10|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00689|PF00690|PF00702|PR01836|PS00154|SM00831|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01524 AFA_15585 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR003661|IPR004358|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PR00344|SM00387|SM00388|SSF47384|SSF55874 AFA_15590 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000792|IPR001789|IPR011006|IPR016032|IPR036388 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172 AFA_15595 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000924|IPR001412|IPR004527|IPR008925|IPR014729|IPR020058|IPR020752 Aminoacyl-tRNA synthetase, class I, anticodon-binding|Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 1|Aminoacyl-tRNA synthetase, class I, conserved site|Glutamate-tRNA ligase, bacterial/mitochondrial|Glutamyl/glutaminyl-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain|Rossmann-like alpha/beta/alpha sandwich fold GO:0000049|GO:0000166|GO:0004812|GO:0004818|GO:0005524|GO:0005737|GO:0006418|GO:0006424|GO:0043039 G3DSA:1.10.8.70|G3DSA:3.40.50.620|MF_00022|PF00749|PR00987|PS00178|SSF48163|SSF52374|TIGR00464 AFA_15600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009822|IPR011335|IPR038590 Restriction endonuclease type II-like|YaeQ|YaeQ superfamily G3DSA:3.10.640.10|PF07152|PIRSF011484|SM01322|SSF52980 AFA_15610 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000485|IPR011008|IPR019887|IPR019888|IPR036388|IPR036390 AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13412|PR00033|SM00344|SSF46785|SSF54909 AFA_15615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002869|IPR019752|IPR029061 Pyruvate-flavodoxin oxidoreductase, central domain|Pyruvate/ketoisovalerate oxidoreductase, catalytic domain|Thiamin diphosphate-binding fold GO:0016491|GO:0016903|GO:0055114 G3DSA:3.40.50.970|G3DSA:3.40.920.10|PF01558|SSF52518|SSF53323 AFA_15625 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003425 CCB3/YggT GO:0016020 PF02325 AFA_15630 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001497|IPR003265|IPR008332|IPR011257|IPR014048|IPR036217|IPR036388|IPR036631 DNA glycosylase|HhH-GPD domain|Methylated DNA-protein cysteine methyltransferase domain superfamily|Methylated DNA-protein cysteine methyltransferase, DNA binding domain|Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding|Methylated-DNA-[protein]-cysteine S-methyltransferase, active site|Methylguanine DNA methyltransferase, ribonuclease-like domain|Winged helix-like DNA-binding domain superfamily GO:0003824|GO:0003908|GO:0006281|GO:0006284 G3DSA:1.10.10.10|G3DSA:1.10.1670.40|G3DSA:1.10.340.30|G3DSA:3.30.160.70|PF00730|PF01035|PF02870|PS00374|SM00478|SSF46767|SSF48150|SSF53155|TIGR00589 AFA_15635 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008816 Glycine zipper 2TM domain GO:0019867 PF05433 AFA_15640 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002173|IPR011611|IPR029056 Carbohydrate kinase PfkB|Carbohydrate/puine kinase, PfkB, conserved site|Ribokinase-like GO:0016773 G3DSA:3.40.1190.20|PF00294|PS00583|SSF53613 AFA_15645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011723|IPR021834 Protein of unknown function DUF3426|Zinc finger/thioredoxin putative PF11906|TIGR02098 AFA_15650 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004498|IPR029063 Ribosomal protein L11 methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase GO:0006479|GO:0008276 G3DSA:3.40.50.150|MF_00735|PF06325|PIRSF000401|SSF53335|TIGR00406 AFA_15655 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004549|IPR005479|IPR005481|IPR005482|IPR011054|IPR013815|IPR016185 ATP-grasp fold, subdomain 1|Acetyl-CoA carboxylase, biotin carboxylase|Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain superfamily|Rudiment single hybrid motif GO:0005524|GO:0016874 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|PF00289|PF02785|PF02786|PS00866|PS00867|SM00878|SSF51246|SSF52440|SSF56059|TIGR00514 AFA_15660 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000089|IPR001249|IPR001882|IPR011053 Acetyl-CoA biotin carboxyl carrier|Biotin-binding site|Biotin/lipoyl attachment|Single hybrid motif GO:0003989|GO:0006633|GO:0009317 G3DSA:2.40.50.100|PF00364|PR01071|PS00188|SSF51230|TIGR00531 AFA_15665 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001874|IPR018509|IPR036441 Dehydroquinase, class II|Dehydroquinase, class II superfamily|Dehydroquinase, class II, conserved site GO:0003855 G3DSA:3.40.50.9100|MF_00169|PD004527|PF01220|PIRSF001399|PS01029|SSF52304|TIGR01088 AFA_15670 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013740|IPR017937|IPR036249 Redoxin|Thioredoxin, conserved site|Thioredoxin-like superfamily GO:0016491|GO:0045454 G3DSA:3.40.30.10|PF08534|PS00194|SSF52833 AFA_15675 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000713|IPR004101|IPR005757|IPR013221|IPR036565|IPR036615 Mur ligase, C-terminal|Mur ligase, C-terminal domain superfamily|Mur ligase, N-terminal catalytic domain|Mur ligase, central|Mur-like, catalytic domain superfamily|Murein peptide ligase GO:0005524|GO:0009058|GO:0009252|GO:0016874|GO:0016881|GO:0071555 G3DSA:3.40.1190.10|G3DSA:3.40.50.720|G3DSA:3.90.190.20|MF_02020|PF01225|PF02875|PF08245|SSF51984|SSF53244|SSF53623|TIGR01081 AFA_15680 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008886|IPR029058 Alpha/Beta hydrolase fold|Uncharacterised protein family UPF0227/Esterase YqiA G3DSA:3.40.50.1820|PF05728|SSF53474 AFA_15685 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001900|IPR012340 Nucleic acid-binding, OB-fold|Ribonuclease II/R GO:0003723|GO:0004540 PF00773|SM00955|SSF50249 AFA_15690 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:3.30.1150.10|PF13103|SSF74653 AFA_15695 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006151|IPR011342|IPR013708|IPR022893|IPR036291 NAD(P)-binding domain superfamily|Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase|Shikimate dehydrogenase|Shikimate dehydrogenase family|Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0019632|GO:0050661|GO:0055114 G3DSA:3.40.50.10860|G3DSA:3.40.50.720|MF_00222|PF01488|PF08501|SSF51735|SSF53223|TIGR00507 AFA_15700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001264|IPR011812|IPR023346|IPR036950 Biosynthetic peptidoglycan transglycosylase|Glycosyl transferase, family 51|Lysozyme-like domain superfamily|Penicillin binding protein transglycosylase domain GO:0009252|GO:0009274|GO:0016021|GO:0016763 G3DSA:1.10.3810.10|MF_00766|PF00912|SSF53955|TIGR02070 AFA_15705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005495|IPR030923 LPS export ABC transporter permease LptG|Permease LptG/LptF-related GO:0016021|GO:0043190|GO:0055085 PF03739|TIGR04408 AFA_15710 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004617|IPR004843|IPR029052 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical)|Calcineurin-like phosphoesterase domain, ApaH type|Metallo-dependent phosphatase-like GO:0008803|GO:0016787 G3DSA:3.60.21.10|PF00149|PIRSF000903|SSF56300|TIGR00668 AFA_15715 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 PF01553|SM00563|SSF69593 AFA_15720 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005227|IPR006641|IPR012337|IPR037027 Putative pre-16S rRNA nuclease|Ribonuclease H-like superfamily|YqgF/RNase H-like domain|YqgF/RNase H-like domain superfamily GO:0006139|GO:0006364 G3DSA:3.30.420.140|MF_00651|PF03652|SM00732|SSF53098|TIGR00250 AFA_15725 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003774 Protein of unknown function UPF0301 G3DSA:3.40.1740.10|MF_00758|PF02622|SSF143456 AFA_15730 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018527|IPR024922|IPR024935 Rubredoxin|Rubredoxin domain|Rubredoxin, iron-binding site GO:0005506|GO:0009055|GO:0046872 G3DSA:2.20.28.10|PF00301|PIRSF000071|PR00163|PS00202|SSF57802 AFA_15735 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013749|IPR029056 Pyridoxamine kinase/Phosphomethylpyrimidine kinase|Ribokinase-like G3DSA:3.40.1190.20|PF08543|SSF53613 AFA_15740 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013785|IPR022998|IPR034291|IPR036206 Aldolase-type TIM barrel|Thiamin phosphate synthase superfamily|Thiamine phosphate synthase|Thiamine phosphate synthase/TenI GO:0003824|GO:0004789|GO:0009228 G3DSA:3.20.20.70|MF_00097|PF02581|SSF51391|TIGR00693 AFA_15745 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004639|IPR005814|IPR015421|IPR015422|IPR015424 Aminotransferase class-III|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0003824|GO:0008483|GO:0030170|GO:0033014|GO:0042286 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00375|PF00202|PS00600|SSF53383|TIGR00713 AFA_15750 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 AFA_15755 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR023187|IPR036388|IPR036390 MarR-type HTH domain|Transcriptional regulator MarR-type, conserved site|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01047|PR00598|PS01117|SM00347|SSF46785 AFA_15760 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002813|IPR016117 ArgJ-like domain superfamily|Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 G3DSA:3.10.20.340|G3DSA:3.60.70.12|MF_01106|PD004193|PF01960|SSF56266|TIGR00120 AFA_15765 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009760 Protein of unknown function DUF1328 GO:0005886 MF_01361|PF07043|PIRSF036466 AFA_15770 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008462|IPR026042|IPR036629 CsbD-like domain|Stress response protein YjbJ|YjbJ superfamily G3DSA:1.10.1470.10|PF05532|PIRSF039008|SSF69047 AFA_15775 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001787|IPR018258|IPR028909|IPR036164 L21-like superfamily|Ribosomal protein L21|Ribosomal protein L21, conserved site|Ribosomal protein L21-like GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 MF_01363|PF00829|PS01169|SSF141091|TIGR00061 AFA_15780 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001684|IPR018261 Ribosomal protein L27|Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.40.50.1030|MF_00539|PD003114|PF01016|PR00063|PS00831|SSF110324|TIGR00062 AFA_15785 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006073|IPR006074|IPR006169|IPR014100|IPR027417|IPR035101|IPR036726 GTP binding domain|GTP-binding protein Obg/CgtA|GTP-binding protein, Obg-type|GTP1/OBG domain|GTP1/OBG domain superfamily|GTP1/OBG, conserved site|P-loop containing nucleoside triphosphate hydrolase GO:0000287|GO:0003924|GO:0005525 G3DSA:2.70.210.12|G3DSA:3.40.50.300|MF_01454|PF01018|PF01926|PIRSF002401|PR00326|PS00905|SSF52540|SSF82051|TIGR02729 AFA_15790 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001048|IPR001057|IPR002478|IPR005715|IPR011529|IPR015947|IPR019797|IPR036393|IPR036974 Acetylglutamate kinase-like superfamily|Aspartate/glutamate/uridylate kinase|Glutamate 5-kinase|Glutamate 5-kinase, conserved site|Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase|Glutamate/acetylglutamate kinase|PUA domain|PUA domain superfamily|PUA-like superfamily GO:0003723|GO:0004349|GO:0005737|GO:0006561 G3DSA:2.30.130.10|G3DSA:3.40.1160.10|MF_00456|PF00696|PF01472|PIRSF000729|PR00474|PS00902|SM00359|SSF53633|SSF88697|TIGR01027 AFA_15795 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006076|IPR023080|IPR036188 D-amino acid dehydrogenase DadA|FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0008718|GO:0016491|GO:0019478|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|MF_01202|PF01266|SSF51905|SSF54373 AFA_15800 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001867|IPR011006|IPR016032|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF00486|SM00862|SSF46894|SSF52172 AFA_15805 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 AFA_15810 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 AFA_15815 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002817|IPR025747|IPR037509|IPR038521 Phosphomethylpyrimidine synthase|Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B|ThiC-associated domain|ThiC/Bza superfamily GO:0009228|GO:0016830|GO:0051536 G3DSA:3.20.20.540|MF_00089|PF01964|PF13667|TIGR00190 AFA_15820 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006664|IPR006665|IPR036737|IPR039567 Glycine zipper domain|OmpA-like domain|OmpA-like domain superfamily|Outer membrane protein, bacterial GO:0009279|GO:0016021 G3DSA:3.30.1330.60|PF00691|PF13488|PR01021|PR01023|SSF103088 AFA_15825 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_15830 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540 AFA_15835 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 AFA_15840 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 AFA_15845 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001638|IPR018313 Solute-binding protein family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site G3DSA:3.40.190.10|PF00497|PS01039|SM00062|SSF53850 AFA_15850 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_15855 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003838|IPR004513 ABC transporter permease protein domain|Cell division protein FtsX GO:0016020|GO:0016021 PF02687|PIRSF003097 AFA_15860 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003265|IPR005760|IPR011257|IPR015797|IPR023170|IPR029119 A/G-specific adenine glycosylase MutY|DNA glycosylase|Helix-turn-helix, base-excision DNA repair, C-terminal|HhH-GPD domain|MutY, C-terminal|NUDIX hydrolase-like domain superfamily GO:0003824|GO:0006281|GO:0006284|GO:0016787|GO:0019104 G3DSA:1.10.1670.10|G3DSA:1.10.340.30|G3DSA:3.90.79.10|PF00730|PF14815|SM00478|SSF48150|SSF55811|TIGR01084 AFA_15865 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001182|IPR011923|IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site|Probable peptidoglycan glycosyltransferase FtsW/RodA|Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021|GO:0051301 MF_02079|PF01098|PS00428|TIGR02210 AFA_15870 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001460|IPR005311|IPR012338|IPR017790|IPR036138 Beta-lactamase/transpeptidase-like|Penicillin-binding protein 2|Penicillin-binding protein, dimerisation domain|Penicillin-binding protein, dimerisation domain superfamily|Penicillin-binding protein, transpeptidase GO:0008658|GO:0009002|GO:0009252|GO:0016020 G3DSA:3.30.1390.30|G3DSA:3.40.710.10|G3DSA:3.90.1310.10|MF_02081|PF00905|PF03717|SSF56519|SSF56601|TIGR03423 AFA_15875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 PF04093|TIGR03426 AFA_15880 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007221 Rod shape-determining protein MreC GO:0008360 G3DSA:2.40.10.340|G3DSA:2.40.10.350|PF04085|PIRSF038471|TIGR00219 AFA_15885 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004753 Cell shape determining protein MreB GO:0000902 G3DSA:3.30.420.40|G3DSA:3.90.640.10|PF06723|PR01652|SSF53067|TIGR00904 AFA_15890 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003837|IPR036113 Glu-tRNAGln amidotransferase C subunit|Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 G3DSA:1.10.20.60|MF_00122|PF02686|SSF141000|TIGR00135 AFA_15895 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004412|IPR020556|IPR023631|IPR036928 Amidase signature (AS) superfamily|Amidase signature domain|Amidase, conserved site|Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 G3DSA:3.90.1300.10|MF_00120|PF01425|PS00571|SSF75304|TIGR00132 AFA_15900 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003789|IPR004413|IPR006075|IPR014746|IPR017958|IPR018027|IPR023168 Asn/Gln amidotransferase|Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic|Aspartyl/glutamyl-tRNA amidotransferase subunit B-like|Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal|Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit|Glutamine synthetase/guanido kinase, catalytic domain|Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0003824|GO:0016874|GO:0016884 G3DSA:1.10.10.410|G3DSA:1.10.150.380|MF_00121|PF02637|PF02934|PS01234|SM00845|SSF55931|SSF89095|TIGR00133 AFA_15905 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000836|IPR004467|IPR023031|IPR029057 Orotate phosphoribosyl transferase domain|Orotate phosphoribosyltransferase|Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0004588|GO:0006221|GO:0009116 G3DSA:3.40.50.2020|MF_01208|PF00156|SSF53271|TIGR00336 AFA_15910 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 AFA_15915 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR032808 DoxX family PF07681 AFA_15920 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004183|IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type|Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0008270|GO:0016491|GO:0016701|GO:0055114 G3DSA:3.40.830.10|PF02900|PIRSF006157|SSF53213 AFA_15925 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004808|IPR005135|IPR036691 AP endonuclease 1|Endonuclease/exonuclease/phosphatase|Endonuclease/exonuclease/phosphatase superfamily GO:0004518|GO:0006281 G3DSA:3.60.10.10|PF03372|SSF56219|TIGR00195|TIGR00633 AFA_15930 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002323|IPR009056|IPR036909 Cytochrome c, class IE|Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0005506|GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF13442|PR00607|SSF46626 AFA_15935 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001117|IPR001287|IPR008972|IPR011707 Cupredoxin|Multicopper oxidase, type 1|Multicopper oxidase, type 3|Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 G3DSA:2.60.40.420|PF00394|PF07732|PR00695|SSF49503|TIGR02376 AFA_15940 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR036388|IPR036390 MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01047|PR00598|SM00347|SSF46785 AFA_15945 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR025878|IPR036250|IPR037069 Acetyl-CoA dehydrogenase-like C-terminal domain|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PF12806|SSF47203|SSF56645 AFA_15950 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_15955 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003781|IPR013815|IPR016102|IPR032875|IPR036291 ATP-grasp fold, subdomain 1|CoA-binding|NAD(P)-binding domain superfamily|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain GO:0005524|GO:0048037 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.261|G3DSA:3.40.50.720|PF13380|PF13549|PF13607|SM00881|SSF51735|SSF52210|SSF56059 AFA_15960 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001753|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:3.90.226.10|PF00378|SSF52096 AFA_15965 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000883|IPR036927 Cytochrome c oxidase subunit I|Cytochrome c oxidase-like, subunit I superfamily GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 G3DSA:1.20.210.10|PF00115|PR00173|SSF81442 AFA_15975 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002078|IPR002197|IPR003593|IPR009057|IPR025662|IPR025943|IPR025944|IPR027417|IPR029016 AAA+ ATPase domain|DNA binding HTH domain, Fis-type|GAF-like domain superfamily|Homeobox-like domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.450.40|G3DSA:3.40.50.300|PF00158|PF02954|PR01590|PS00675|PS00676|PS00688|SM00382|SSF46689|SSF52540|SSF55781 AFA_15980 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000595|IPR012318|IPR014710|IPR018490|IPR036388|IPR036390 Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|SM00100|SM00419|SSF46785|SSF51206 AFA_15985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005532|IPR016187 C-type lectin fold|Sulfatase-modifying factor enzyme G3DSA:3.90.1580.10|PF03781|SSF56436 AFA_15990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR032710|IPR037401 NTF2-like domain superfamily|SnoaL-like domain G3DSA:3.10.450.50|PF12680|SSF54427 AFA_15995 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001647|IPR009057 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PR00455|SSF46689 AFA_16000 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002937|IPR036188 Amine oxidase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:1.10.405.20|G3DSA:3.30.70.1990|G3DSA:3.50.50.60|PF01593|SSF51905 AFA_16005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010775 Protein of unknown function DUF1365 PF07103 AFA_16010 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003333|IPR029063 Mycolic acid cyclopropane synthase|S-adenosyl-L-methionine-dependent methyltransferase GO:0008610 G3DSA:3.40.50.150|PF02353|PIRSF003085|SSF53335 AFA_16020 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR036259 MFS transporter superfamily G3DSA:1.20.1250.20|PF13347|SSF103473 AFA_16025 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR024409 Protein of unknown function DUF3833 PF12915 AFA_16030 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF00106|PR00081|SSF51735 AFA_16035 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001509|IPR010099|IPR013549|IPR036291 Domain of unknown function DUF1731|Epimerase family protein SDR39U1|NAD(P)-binding domain superfamily|NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 G3DSA:3.40.50.720|PF01370|PF08338|SSF51735|TIGR01777 AFA_16040 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 MF_02062|PF03616|TIGR00210 AFA_16045 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000092|IPR008949|IPR033749 Isoprenoid synthase domain superfamily|Polyprenyl synthetase|Polyprenyl synthetase, conserved site GO:0008299 G3DSA:1.10.600.10|PF00348|PS00444|PS00723|SSF48576 AFA_16050 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008533|IPR027417 Domain of unknown function DUF815|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF05673|SSF52540 AFA_16055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000086|IPR003561|IPR013785|IPR015797|IPR020084|IPR020476|IPR022998|IPR036206 Aldolase-type TIM barrel|Mutator MutT|NUDIX hydrolase|NUDIX hydrolase domain|NUDIX hydrolase, conserved site|NUDIX hydrolase-like domain superfamily|Thiamin phosphate synthase superfamily|Thiamine phosphate synthase/TenI GO:0003824|GO:0006281|GO:0008413|GO:0016787 G3DSA:3.20.20.70|G3DSA:3.90.79.10|PF00293|PF02581|PR00502|PS00893|SSF51391|SSF55811|TIGR00586 AFA_16060 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF01564|SSF53335 AFA_16065 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003423|IPR010131 Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT GO:0015562|GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|SSF56954|TIGR01845 AFA_16070 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001036|IPR027463 Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866 AFA_16075 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001036|IPR027463 Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866 AFA_16080 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006143|IPR039562 Membrane fusion protein, biotin-lipoyl like domain|RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF13437|PF13533|SSF111369|TIGR01730 AFA_16085 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009777|IPR027462|IPR036268 Cell division protein ZapD|Z ring-associated protein D, C-terminal|ZapD domain superfamily G3DSA:1.10.3900.10|G3DSA:2.60.440.10|MF_01092|PF07072|SSF160950 AFA_16090 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001977|IPR027417 Dephospho-CoA kinase|P-loop containing nucleoside triphosphate hydrolase GO:0004140|GO:0005524|GO:0015937 G3DSA:3.40.50.300|MF_00376|PF01121|SSF52540|TIGR00152 AFA_16100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000792|IPR016032|IPR036388 Signal transduction response regulator, C-terminal effector|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF00196|PR00038|PS00622|SM00421|SSF46894 AFA_16105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003721|IPR014729 Pantoate-beta-alanine ligase|Rossmann-like alpha/beta/alpha sandwich fold GO:0004592|GO:0015940 G3DSA:3.30.1300.10|G3DSA:3.40.50.620|MF_00158|PF02569|SSF52374|TIGR00018 AFA_16110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003768 Segregation and condensation protein A MF_01805|PF02616 AFA_16115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021853 Protein of unknown function DUF3460 PF11943 AFA_16120 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004638|IPR011701|IPR036259 Drug resistance transporter EmrB/QacA subfamily|MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1250.20|G3DSA:1.20.1720.10|PF07690|SSF103473|TIGR00711 AFA_16125 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005146|IPR020825 B3/B4 tRNA-binding domain|Phenylalanyl-tRNA synthetase, B3/B4 GO:0003723|GO:0004826 G3DSA:3.50.40.10|PF03483|SM00873|SSF56037 AFA_16130 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 AFA_16135 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003313|IPR009057|IPR018060|IPR018062|IPR037923 AraC-type arabinose-binding/dimerisation domain|DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox-like domain superfamily|Transcription regulator HTH-like GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF02311|PF12833|PS00041|SM00342|SSF46689|SSF51215 AFA_16140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|G3DSA:3.30.450.180|PF13560|SM00530|SSF47413 AFA_16145 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000489|IPR003726|IPR003759|IPR004223|IPR006158|IPR011005|IPR011822|IPR036589|IPR036594|IPR036724|IPR037010 Cobalamin (vitamin B12)-binding domain|Cobalamin (vitamin B12)-binding module, cap domain|Cobalamin-binding domain superfamily|Cobalamin-dependent methionine synthase|Dihydropteroate synthase-like|Homocysteine-binding domain|Homocysteine-binding domain superfamily|Methionine synthase domain|Pterin-binding domain|Vitamin B12-dependent methionine synthase, activation domain|Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008270|GO:0008705|GO:0009086|GO:0031419|GO:0042558|GO:0044237|GO:0046872 G3DSA:1.10.1240.10|G3DSA:1.10.288.10|G3DSA:3.10.196.10|G3DSA:3.20.20.20|G3DSA:3.20.20.330|G3DSA:3.40.50.280|PF00809|PF02310|PF02574|PF02607|PF02965|PIRSF000381|SM01018|SSF47644|SSF51717|SSF52242|SSF56507|SSF82282|TIGR02082 AFA_16150 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935 AFA_16155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002491 ABC transporter periplasmic binding domain G3DSA:3.40.50.1980|PF01497|SSF53807 AFA_16160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR010105|IPR011662|IPR012910|IPR036942|IPR037066 Secretin/TonB, short N-terminal domain|TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily|TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0019867|GO:0038023 G3DSA:2.170.130.10|G3DSA:2.40.170.20|G3DSA:3.55.50.30|PF00593|PF07715|SM00965|SSF56935|TIGR01783 AFA_16165 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006860|IPR012373|IPR032623 Fe(2+)-dicitrate sensor, transmembrane component|FecR protein|FecR, N-terminal G3DSA:2.60.120.1440|PF04773|PF16220|PIRSF018266 AFA_16170 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007627|IPR013249|IPR013324|IPR013325|IPR014284|IPR036388 RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF04542|PF08281|SSF88659|SSF88946|TIGR02937 AFA_16180 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008867|IPR013785|IPR033983 Aldolase-type TIM barrel|Thiazole synthase|Thiazole synthase ThiG GO:0003824|GO:0009228 G3DSA:3.20.20.70|MF_00443|PF05690|SSF110399 AFA_16185 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004399|IPR013749|IPR029056 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase|Pyridoxamine kinase/Phosphomethylpyrimidine kinase|Ribokinase-like GO:0008972|GO:0009228 G3DSA:3.40.1190.20|PF08543|SSF53613|TIGR00097 AFA_16190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000845|IPR010049|IPR035994 MTA/SAH nucleosidase|Nucleoside phosphorylase domain|Nucleoside phosphorylase superfamily GO:0003824|GO:0008782|GO:0008930|GO:0009116|GO:0009164|GO:0019509 G3DSA:3.40.50.1580|PF01048|SSF53167|TIGR01704 AFA_16195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF01135|SSF53335 AFA_16200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003423|IPR010130 Outer membrane efflux protein|Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 G3DSA:1.20.1600.10|PF02321|SSF56954|TIGR01844 AFA_16205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004821|IPR011914|IPR014729 Cytidyltransferase-like domain|RfaE bifunctional protein, domain II|Rossmann-like alpha/beta/alpha sandwich fold GO:0003824|GO:0005975|GO:0009058|GO:0016773|GO:0016779 G3DSA:3.40.50.620|PF01467|SSF52374|TIGR00125|TIGR02199 AFA_16210 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009078|IPR012348 Ferritin-like superfamily|Ribonucleotide reductase-like GO:0016491|GO:0055114 G3DSA:1.10.620.20|SSF47240 AFA_16215 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004147|IPR010232|IPR011009 Probable protein kinase UbiB|Protein kinase-like domain superfamily|UbiB domain GO:0006744 PF03109|SSF56112|TIGR01982 AFA_16220 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003033 SCP2 sterol-binding domain PF02036 AFA_16225 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007379|IPR032710 NTF2-like domain superfamily|Tim44-like domain G3DSA:3.10.450.240|PF04280|SM00978|SSF54427 AFA_16230 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004033|IPR023576|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|UbiE/COQ5 methyltransferase|UbiE/COQ5 methyltransferase, conserved site GO:0008168 G3DSA:3.40.50.150|MF_01813|PF01209|PS01183|PS01184|SSF53335|TIGR01934 AFA_16235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR001867|IPR011006|IPR011879|IPR016032|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000156|GO:0000160|GO:0003677|GO:0006355|GO:0006817 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF46894|SSF52172|TIGR02154 AFA_16240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR003661|IPR004358|IPR014310|IPR021766|IPR035965|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAS domain superfamily|Phosphate regulon sensor protein PhoR|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase, phosphate regulon sensor PhoR|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0000160|GO:0004673|GO:0004721|GO:0007165|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PF11808|PR00344|SM00387|SM00388|SSF47384|SSF55785|SSF55874|TIGR02966 AFA_16245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase G3DSA:3.10.180.10|SSF54593 AFA_16250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003833|IPR010016|IPR029000 Carboxyltransferase domain, subdomain C and D|Cyclophilin-like domain superfamily|KipI family G3DSA:2.40.100.10|G3DSA:3.30.1360.40|PF02682|SM00796|SSF160467|SSF50891|TIGR00370 AFA_16255 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003778|IPR029000 Carboxyltransferase domain, subdomain A and B|Cyclophilin-like domain superfamily G3DSA:2.40.100.10|PF02626|SM00797|SSF50891|TIGR00724 AFA_16260 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000634|IPR001721|IPR001926|IPR005787|IPR036052|IPR038110 Pyridoxal-phosphate dependent enzyme|Serine/threonine dehydratase, pyridoxal-phosphate-binding site|Threonine dehydratase, ACT-like domain|Threonine dehydratase, ACT-like domain superfamily|Threonine dehydratase, biosynthetic|Tryptophan synthase beta subunit-like PLP-dependent enzyme GO:0004794|GO:0006520|GO:0009097|GO:0030170 G3DSA:3.40.1020.10|G3DSA:3.40.50.1100|PF00291|PF00585|PS00165|SSF53686|SSF55021|TIGR01124 AFA_16265 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR032816 SNARE associated Golgi protein PF09335 AFA_16270 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004017|IPR004113|IPR006094|IPR009051|IPR016164|IPR017896|IPR017900|IPR021817|IPR022153|IPR036318 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Alpha-helical ferredoxin|Cysteine-rich domain|FAD linked oxidase, N-terminal|FAD-binding, type PCMH-like superfamily|FAD-linked oxidase, C-terminal|FAD-linked oxidase-like, C-terminal|Protein of unknown function DUF3400|Protein of unknown function DUF3683 GO:0003824|GO:0016491|GO:0050660|GO:0051536|GO:0055114 G3DSA:3.30.465.40|G3DSA:3.30.70.2740|PF01565|PF02754|PF02913|PF11880|PF12447|PF13183|PS00198|SSF46548|SSF55103|SSF56176 AFA_16275 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012349|IPR014419 FMN-binding split barrel|Heme utilization protein with pyridoxamine 5'-phosphate domain GO:0048037 G3DSA:2.30.110.10|PF13883|PIRSF004633|SSF50475 AFA_16280 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000209|IPR005546|IPR006315|IPR013425|IPR015500|IPR022398|IPR023828|IPR036709|IPR036852 Autotransporter beta-domain|Autotransporter beta-domain superfamily|Autotransporter-associated beta strand repeat|Outer membrane autotransporter barrel|Peptidase S8, subtilisin, His-active site|Peptidase S8, subtilisin, Ser-active site|Peptidase S8, subtilisin-related|Peptidase S8/S53 domain|Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508|GO:0019867 G3DSA:2.40.128.130|G3DSA:3.40.50.200|PF00082|PF03797|PF12951|PR00723|PS00137|PS00138|SM00869|SSF103515|SSF52743|TIGR01414|TIGR02601 AFA_16285 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000209|IPR005546|IPR006315|IPR013425|IPR015500|IPR022398|IPR023828|IPR036709|IPR036852 Autotransporter beta-domain|Autotransporter beta-domain superfamily|Autotransporter-associated beta strand repeat|Outer membrane autotransporter barrel|Peptidase S8, subtilisin, His-active site|Peptidase S8, subtilisin, Ser-active site|Peptidase S8, subtilisin-related|Peptidase S8/S53 domain|Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508|GO:0019867 G3DSA:2.40.128.130|G3DSA:3.40.50.200|PF00082|PF03797|PF12951|PR00723|PS00137|PS00138|SM00869|SSF103515|SSF52743|TIGR01414|TIGR02601 AFA_16290 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000209|IPR005546|IPR006315|IPR013425|IPR015500|IPR022398|IPR023828|IPR036709|IPR036852 Autotransporter beta-domain|Autotransporter beta-domain superfamily|Autotransporter-associated beta strand repeat|Outer membrane autotransporter barrel|Peptidase S8, subtilisin, His-active site|Peptidase S8, subtilisin, Ser-active site|Peptidase S8, subtilisin-related|Peptidase S8/S53 domain|Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508|GO:0019867 G3DSA:2.40.128.130|G3DSA:3.40.50.200|PF00082|PF03797|PF12951|PR00723|PS00137|PS00138|SM00869|SSF103515|SSF52743|TIGR01414|TIGR02601 AFA_16295 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000209|IPR005546|IPR006315|IPR013425|IPR015500|IPR022398|IPR023828|IPR036709|IPR036852 Autotransporter beta-domain|Autotransporter beta-domain superfamily|Autotransporter-associated beta strand repeat|Outer membrane autotransporter barrel|Peptidase S8, subtilisin, His-active site|Peptidase S8, subtilisin, Ser-active site|Peptidase S8, subtilisin-related|Peptidase S8/S53 domain|Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508|GO:0019867 G3DSA:2.40.128.130|G3DSA:3.40.50.200|PF00082|PF03797|PF12951|PR00723|PS00137|PS00138|SM00869|SSF103515|SSF52743|TIGR01414|TIGR02601 AFA_16300 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000836|IPR005764|IPR029057 Adenine phosphoribosyl transferase|Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0003999|GO:0005737|GO:0006168|GO:0009116 G3DSA:3.40.50.2020|MF_00004|PF00156|SSF53271|TIGR01090 AFA_16305 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR011527|IPR014223|IPR017871|IPR027417|IPR036640 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter type 1, transmembrane domain superfamily|ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016021|GO:0016887|GO:0034775|GO:0042626|GO:0045454|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123|TIGR02868 AFA_16310 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR011527|IPR014216|IPR017871|IPR027417|IPR036640 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter type 1, transmembrane domain superfamily|ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016020|GO:0016021|GO:0016887|GO:0042626|GO:0042883|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123|TIGR02857 AFA_16315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011724|IPR012994 Cyd operon protein YbgT|Membrane bound YbgT-like PF08173|TIGR02106 AFA_16320 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 PF02322|PIRSF000267|TIGR00203 AFA_16325 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 PF01654|PIRSF006446 AFA_16330 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000835|IPR026282|IPR036388|IPR036390 DNA-binding protein, MJ1563 type|MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF12802|PIRSF006707|SSF46785 AFA_16335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000644|IPR001347|IPR004800 CBS domain|Phosphosugar isomerase, KdsD/KpsF-type|Sugar isomerase (SIS) GO:0005975|GO:0016853|GO:0097367|GO:1901135 G3DSA:3.10.580.10|G3DSA:3.40.50.10490|PF00571|PF01380|PIRSF004692|SM00116|SSF53697|TIGR00393 AFA_16340 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010023|IPR023214|IPR036412 HAD superfamily|HAD-like superfamily|KdsC family GO:0016788 G3DSA:3.40.50.1000|PF08282|PIRSF006118|SSF56784|TIGR01670 AFA_16345 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010664|IPR026265 Lipopolysaccharide assembly, LptC-related|Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 PF06835|TIGR04409 AFA_16350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005653|IPR014340 Lipopolysaccharide export system protein LptA|Organic solvent tolerance-like, N-terminal GO:0001530|GO:0015920|GO:0042597 G3DSA:2.60.450.10|MF_01914|PF03968|TIGR03002 AFA_16355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030921|IPR032823 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|LPS export ABC transporter, ATP-binding protein LptB|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887|GO:0043190|GO:0055085 G3DSA:3.40.50.300|PF00005|PF12399|PS00211|SM00382|SSF52540|TIGR04406 AFA_16360 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003489|IPR036567 Ribosome hibernation promoting factor/RaiA|Ribosome hibernation promotion factor-like GO:0044238 G3DSA:3.30.160.100|PF02482|SSF69754|TIGR00741 AFA_16365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002178|IPR016152 PTS EIIA type-2 domain|Phosphotransferase/anion transporter G3DSA:3.40.930.10|PF00359|PS00372|SSF55804 AFA_16370 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003755|IPR011104|IPR011126|IPR028979 HPr kinase/phosphorylase, C-terminal|HPr(Ser) kinase/phosphorylase|HPr(Ser) kinase/phosphorylase, N-terminal|HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 G3DSA:3.40.1390.20|G3DSA:3.40.50.300|MF_01249|PF02603|PF07475|SSF53795|SSF75138|TIGR00679 AFA_16375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005337|IPR027417 P-loop containing nucleoside triphosphate hydrolase|RapZ-like family GO:0005524 G3DSA:3.40.50.300|MF_00636|PF03668|PIRSF005052|SSF52540 AFA_16380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007730|IPR009009|IPR012997|IPR034718|IPR036680|IPR036908 Endolytic peptidoglycan transglycosylase RlpA|Rare lipoprotein A|RlpA-like domain superfamily|RlpA-like protein, double-psi beta-barrel domain|Sporulation-like domain|Sporulation-like domain superfamily GO:0016829|GO:0042834 G3DSA:2.40.40.10|G3DSA:3.30.70.1070|MF_02071|PF03330|PF05036|SSF110997|SSF50685|TIGR00413 AFA_16385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000878|IPR008189|IPR014776|IPR014777|IPR018063|IPR035996 SAM-dependent methyltransferase RsmI, conserved site|Tetrapyrrole methylase|Tetrapyrrole methylase superfamily|Tetrapyrrole methylase, subdomain 1|Tetrapyrrole methylase, subdomain 2|rRNA small subunit methyltransferase I GO:0008168 G3DSA:3.30.950.10|G3DSA:3.40.1010.10|MF_01877|PF00590|PIRSF005917|PS01296|SSF53790|TIGR00096 AFA_16390 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003509|IPR011335|IPR011856 Restriction endonuclease type II-like|Uncharacterised protein family UPF0102|tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 G3DSA:3.40.1350.10|MF_00048|PF02021|SSF52980|TIGR00252 AFA_16395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001347|IPR004515 Phosphoheptose isomerase|Sugar isomerase (SIS) GO:0005737|GO:0008968|GO:0097367|GO:1901135 G3DSA:3.40.50.10490|MF_00067|PF13580|SSF53697 AFA_16400 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007055|IPR014004 BON domain|Transport-associated and nodulation domain, bacteria PF04972|SM00749 AFA_16405 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013740|IPR036249 Redoxin|Thioredoxin-like superfamily GO:0016491 G3DSA:3.40.30.10|PF08534|SSF52833 AFA_16410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001048|IPR001057|IPR004662|IPR036393|IPR037528 Acetylglutamate kinase ArgB|Acetylglutamate kinase family|Acetylglutamate kinase-like superfamily|Aspartate/glutamate/uridylate kinase|Glutamate/acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 G3DSA:3.40.1160.10|MF_00082|PF00696|PIRSF000728|PR00474|SSF53633|TIGR00761 AFA_16415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006439|IPR010237|IPR023214|IPR036412 HAD hydrolase, subfamily IA|HAD superfamily|HAD-like superfamily|Pyrimidine 5-nucleotidase GO:0016787 G3DSA:1.10.150.450|G3DSA:3.40.50.1000|PF13419|SSF56784|TIGR01509|TIGR01993 AFA_16420 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000594|IPR035985 THIF-type NAD/FAD binding fold|Ubiquitin-activating enzyme GO:0008641 G3DSA:3.40.50.720|PF00899|SSF69572 AFA_16425 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001478|IPR004447|IPR005151|IPR029045|IPR036034 C-terminal-processing peptidase S41A|ClpP/crotonase-like domain superfamily|PDZ domain|PDZ superfamily|Tail specific protease GO:0005515|GO:0006508|GO:0008236 G3DSA:2.30.42.10|G3DSA:3.30.750.44|G3DSA:3.90.226.10|PF03572|PF13180|SM00228|SM00245|SSF50156|SSF52096|TIGR00225 AFA_16430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011055|IPR016047 Duplicated hybrid motif|Peptidase M23 G3DSA:2.70.70.10|PF01551|SSF51261 AFA_16435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001345|IPR005952|IPR013078|IPR029033 Histidine phosphatase superfamily|Histidine phosphatase superfamily, clade-1|Phosphoglycerate mutase 1|Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0004619|GO:0006096|GO:0016868 G3DSA:3.40.50.1240|MF_01039|PF00300|PIRSF000709|PS00175|SM00855|SSF53254|TIGR01258 AFA_16440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001763|IPR036873 Rhodanese-like domain|Rhodanese-like domain superfamily G3DSA:3.40.250.10|PF00581|SM00450|SSF52821 AFA_16445 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002109|IPR011767|IPR011900|IPR014025|IPR036249 Glutaredoxin|Glutaredoxin active site|Glutaredoxin subgroup|Glutaredoxin, GrxC|Thioredoxin-like superfamily GO:0009055|GO:0015035|GO:0045454 G3DSA:3.40.30.10|PF00462|PR00160|PS00195|SSF52833|TIGR02181 AFA_16450 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003708|IPR035958 Bacterial protein export chaperone SecB|SecB-like superfamily GO:0015031|GO:0051082|GO:0051262 G3DSA:3.10.420.10|MF_00821|PF02556|PR01594|SSF54611|TIGR00809 AFA_16455 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006109|IPR006168|IPR008927|IPR011128|IPR013328|IPR036291 6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|Glycerol-3-phosphate dehydrogenase, NAD-dependent|Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal|Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal|NAD(P)-binding domain superfamily GO:0004367|GO:0005975|GO:0006072|GO:0009331|GO:0016491|GO:0016616|GO:0046168|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|MF_00394|PF01210|PF07479|PIRSF000114|PR00077|PS00957|SSF48179|SSF51735 AFA_16460 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_16465 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001537|IPR016914|IPR029026|IPR029028 Alpha/beta knot methyltransferases|tRNA (cytidine/uridine-2'-O-)-methyltransferase|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type GO:0001510|GO:0003723|GO:0006396|GO:0008168|GO:0008173 G3DSA:3.40.1280.10|MF_01885|PF00588|PIRSF029256|SSF75217 AFA_16470 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000836|IPR029057 Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0009116 G3DSA:3.40.50.2020|PF00156|SSF53271 AFA_16475 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013216|IPR029063 Methyltransferase type 11|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168 G3DSA:3.40.50.150|PF08241|SSF53335 AFA_16480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002180|IPR034964|IPR036467 Lumazine synthase|Lumazine/riboflavin synthase|Lumazine/riboflavin synthase superfamily GO:0000906|GO:0009231|GO:0009349 G3DSA:3.40.50.960|MF_00178|PF00885|SSF52121 AFA_16485 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR002197|IPR009057|IPR011006 CheY-like superfamily|DNA binding HTH domain, Fis-type|Homeobox-like domain superfamily|Signal transduction response regulator, receiver domain GO:0000160|GO:0003677|GO:0043565 G3DSA:1.10.10.60|G3DSA:3.40.50.2300|PF00072|PF02954|SM00448|SSF46689|SSF52172 AFA_16490 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR003660|IPR003661|IPR004358|IPR017232|IPR035965|IPR036097|IPR036890 HAMP domain|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAS domain superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase, nitrogen fixation and metabolism regulator|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:1.20.1480.50|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF00672|PF02518|PIRSF037532|PR00344|SM00304|SM00387|SM00388|SSF158472|SSF47384|SSF55785|SSF55874 AFA_16495 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025500 Protein of unknown function DUF4390 PF14334 AFA_16500 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001678|IPR004573|IPR018314|IPR023267|IPR029063|IPR035926 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site|NusB-like superfamily|RNA (C5-cytosine) methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase|SAM-dependent methyltransferase RsmB/NOP2-type|rRNA small subunit methyltransferase B GO:0003723|GO:0006364|GO:0008168|GO:0008649 G3DSA:1.10.940.10|G3DSA:3.40.50.150|PF01189|PR02008|PS01153|SSF48013|SSF53335|TIGR00563 AFA_16505 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002792|IPR005839|IPR005840|IPR006638|IPR007197|IPR013848|IPR020612|IPR023404|IPR038135 Elp3/MiaB/NifB|Methylthiotransferase|Methylthiotransferase, N-terminal|Methylthiotransferase, N-terminal domain superfamily|Methylthiotransferase, conserved site|Radical SAM|Radical SAM, alpha/beta horseshoe|Ribosomal protein S12 methylthiotransferase RimO|TRAM domain GO:0003824|GO:0005737|GO:0006400|GO:0016740|GO:0018339|GO:0051536|GO:0051539 G3DSA:2.40.50.140|G3DSA:3.40.50.12160|G3DSA:3.80.30.20|MF_01865|PF00919|PF01938|PF04055|PS01278|SM00729|SSF102114|TIGR00089|TIGR01125 AFA_16510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001451|IPR011004 Hexapeptide repeat|Trimeric LpxA-like superfamily G3DSA:2.160.10.10|PF00132|SSF51161 AFA_16515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005886|IPR016040|IPR036291 NAD(P)-binding domain|NAD(P)-binding domain superfamily|UDP-glucose 4-epimerase GO:0003978|GO:0006012 G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF16363|SSF51735|TIGR01179 AFA_16520 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015942|IPR026286|IPR028615 Asp/Glu/hydantoin racemase|Maleate isomerase|Maleate isomerase/Arylmalonate decarboxylase GO:0006807|GO:0036361|GO:0050076 G3DSA:3.40.50.12500|MF_00943|PF01177|PIRSF015736 AFA_16525 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 AFA_16530 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005000|IPR012689|IPR015813 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase|HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824|GO:0010124|GO:0018802 G3DSA:3.20.20.60|PF03328|SSF51621|TIGR02311 AFA_16535 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR027417 AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SM00382|SSF52540 AFA_16540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_16545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:3.40.190.10|PF13379|SSF53850 AFA_16550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001173|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF00535|SSF53448 AFA_16555 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001296|IPR028098 Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF00534|PF13439|SSF53756 AFA_16560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002797 Polysaccharide biosynthesis protein GO:0016020 PF01943 AFA_16565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003362|IPR017475 Bacterial sugar transferase|Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase PF02397|TIGR03025 AFA_16570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001296|IPR028098 Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF00534|PF13579|SSF53756 AFA_16575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007016 O-antigen ligase-related PF04932 AFA_16580 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007016 O-antigen ligase-related PF04932 AFA_16585 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005888|IPR016040|IPR036291 NAD(P)-binding domain|NAD(P)-binding domain superfamily|dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF16363|SSF51735|TIGR01181 AFA_16590 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005835|IPR005907|IPR029044 Glucose-1-phosphate thymidylyltransferase, short form|Nucleotide-diphospho-sugar transferases|Nucleotidyl transferase domain GO:0008879|GO:0009058|GO:0016779|GO:0045226 G3DSA:3.90.550.10|PF00483|SSF53448|TIGR01207 AFA_16595 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000888|IPR011051|IPR014710 RmlC-like cupin domain superfamily|RmlC-like jelly roll fold|dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 G3DSA:2.60.120.10|PD001462|PF00908|SSF51182|TIGR01221 AFA_16600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005913|IPR029903|IPR036291 NAD(P)-binding domain superfamily|RmlD-like substrate binding domain|dTDP-4-dehydrorhamnose reductase family G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF04321|SSF51735|TIGR01214 AFA_16605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001469|IPR020546|IPR036771|IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily|ATP synthase, F1 complex, delta/epsilon subunit|ATP synthase, F1 complex, delta/epsilon subunit, N-terminal|F0F1 ATP synthase delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933 G3DSA:2.60.15.10|MF_00530|PD000944|PF02823|SSF46604|SSF51344|TIGR01216 AFA_16610 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000194|IPR003593|IPR004100|IPR005722|IPR020003|IPR024034|IPR027417|IPR036121 AAA+ ATPase domain|ATP synthase, F1 complex, beta subunit|ATPase, F1/V1 complex, beta/alpha subunit, C-terminal|ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|ATPase, alpha/beta subunit, nucleotide-binding domain, active site|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015986|GO:0045261|GO:0046034|GO:0046933|GO:1902600 G3DSA:1.10.1140.10|G3DSA:2.40.10.170|G3DSA:3.40.50.300|MF_01347|PF00006|PF02874|PS00152|SM00382|SSF47917|SSF50615|SSF52540|TIGR01039 AFA_16615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000131|IPR023632|IPR035968 ATP synthase, F1 complex, gamma subunit|ATP synthase, F1 complex, gamma subunit conserved site|ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 G3DSA:1.10.287.80|G3DSA:3.40.1380.10|MF_00815|PF00231|PR00126|PS00153|SSF52943|TIGR01146 AFA_16620 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000194|IPR000793|IPR004100|IPR005294|IPR020003|IPR023366|IPR027417|IPR036121|IPR038376 ATP synthase subunit alpha, N-terminal domain-like superfamily|ATP synthase, F1 complex, alpha subunit|ATP synthase, alpha subunit, C-terminal|ATP synthase, alpha subunit, C-terminal domain superfamily|ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|ATPase, alpha/beta subunit, nucleotide-binding domain, active site|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015986|GO:0045261|GO:0046034|GO:0046933|GO:1902600 G3DSA:1.20.150.20|G3DSA:2.40.30.20|G3DSA:3.40.50.300|MF_01346|PF00006|PF00306|PF02874|PIRSF039088|PS00152|SSF47917|SSF50615|SSF52540|TIGR00962 AFA_16625 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000711|IPR026015 ATPase, OSCP/delta subunit|F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily GO:0015986|GO:0046933 G3DSA:1.10.520.20|MF_01416|PF00213|PR00125|SSF47928|TIGR01145 AFA_16630 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002146|IPR005864|IPR028987 ATP synthase, F0 complex, subunit b, bacterial|ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast|F-type ATP synthase subunit B-like, membrane domain superfamily GO:0015078|GO:0015986|GO:0045263 G3DSA:1.20.5.620|MF_01398|PF00430|SSF81573|TIGR01144 AFA_16635 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000454|IPR002379|IPR005953|IPR020537|IPR035921|IPR038662 ATP synthase, F0 complex, subunit C|ATP synthase, F0 complex, subunit C, DCCD-binding site|ATP synthase, F0 complex, subunit C, bacterial/chloroplast|F/V-ATP synthase subunit C superfamily|F1F0 ATP synthase subunit C superfamily|V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015986|GO:0015991|GO:0033177|GO:0045263 G3DSA:1.20.20.10|MF_01396|PF00137|PS00605|SSF81333|TIGR01260 AFA_16640 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000568|IPR023011|IPR035908 ATP synthase, F0 complex, subunit A|ATP synthase, F0 complex, subunit A superfamily|ATP synthase, F0 complex, subunit A, active site GO:0015078|GO:0015986|GO:0045263 G3DSA:1.20.120.220|MF_01393|PF00119|PS00449|SSF81336|TIGR01131 AFA_16645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005598 ATP synthase protein I PF03899 AFA_16650 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001753|IPR014748|IPR018376|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|SSF52096 AFA_16655 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001478|IPR007963|IPR024191|IPR036034 PDZ domain|PDZ superfamily|Peptidase M61|Peptidase M61, catalytic domain GO:0005515 G3DSA:1.10.390.60|G3DSA:2.30.42.10|G3DSA:2.60.40.3650|PF05299|PF13180|PIRSF016493|SSF50156|SSF55486 AFA_16660 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006156|IPR006157 Dihydroneopterin aldolase|Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 G3DSA:3.30.1130.10|PF02152|SM00905|SSF55620|TIGR00525|TIGR00526 AFA_16665 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011063|IPR012089|IPR014729 Rossmann-like alpha/beta/alpha sandwich fold|tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal|tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 G3DSA:3.40.50.620|MF_01850|PF01171|SSF52402 AFA_16670 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003382|IPR004507|IPR036551 Flavin prenyltransferase UbiX-like|Flavin prenyltransferase-like|Flavoprotein GO:0003824 G3DSA:3.40.50.1950|MF_01984|PF02441|SSF52507|TIGR00421 AFA_16675 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002109|IPR004480|IPR014434|IPR036249 Glutaredoxin|Monothiol glutaredoxin|Monothiol glutaredoxin-related|Thioredoxin-like superfamily GO:0009055|GO:0015035|GO:0015036|GO:0045454 G3DSA:3.40.30.10|PF00462|PIRSF005894|SSF52833|TIGR00365 AFA_16680 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002052|IPR004556|IPR019874|IPR025714|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|Methyltransferase domain|Modification methylase HemK|Protein-(glutamine-N5) methyltransferase, release factor-specific|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0006479|GO:0008168|GO:0008276|GO:0032259 G3DSA:1.10.8.10|G3DSA:3.40.50.150|MF_02126|PF13847|PR00507|PS00092|SSF53335|TIGR00536|TIGR03534 AFA_16685 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000352|IPR004373|IPR005139 Peptide chain release factor|Peptide chain release factor 1|Peptide chain release factor class I/class II GO:0003747|GO:0005737|GO:0006415|GO:0016149 G3DSA:3.30.160.20|G3DSA:3.30.70.1660|MF_00093|PF00472|PF03462|PS00745|SM00937|SSF75620|TIGR00019 AFA_16690 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000343|IPR006151|IPR015895|IPR015896|IPR018214|IPR036291|IPR036343|IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily|Glutamyl-tRNA reductase, N-terminal domain superfamily|Glutamyl-tRNA reductase, conserved site|NAD(P)-binding domain superfamily|Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase|Tetrapyrrole biosynthesis, glutamyl-tRNA reductase|Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal|Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 G3DSA:3.30.460.30|G3DSA:3.40.50.720|MF_00087|PF00745|PF01488|PF05201|PIRSF000445|PS00747|SSF51735|SSF69075|SSF69742|TIGR01035 AFA_16700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000160|IPR029787|IPR033479 Double Cache domain 1|GGDEF domain|Nucleotide cyclase G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00990|PF02743|SM00267|SSF55073|TIGR00254 AFA_16705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR019410|IPR029063 Lysine methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF10294|SSF53335 AFA_16710 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF13649|SSF53335 AFA_16715 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR010105|IPR011662|IPR012910|IPR036942|IPR037066 Secretin/TonB, short N-terminal domain|TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily|TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0019867|GO:0038023 G3DSA:2.170.130.10|G3DSA:2.40.170.20|G3DSA:3.55.50.30|PF00593|PF07660|PF07715|SM00965|SSF56935|TIGR01783 AFA_16725 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006860|IPR012373|IPR032508|IPR032623 Fe(2+)-dicitrate sensor, transmembrane component|FecR protein|FecR, N-terminal|Protein FecR, C-terminal G3DSA:2.60.120.1440|PF04773|PF16220|PF16344|PIRSF018266 AFA_16730 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007627|IPR013249|IPR013324|IPR013325|IPR014284|IPR036388 RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|PF04542|PF08281|SSF88659|SSF88946|TIGR02937 AFA_16735 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001424|IPR036423 Superoxide dismutase, copper/zinc binding domain|Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 G3DSA:2.60.40.200|PF00080|SSF49329 AFA_16740 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012349|IPR038725 FMN-binding split barrel|General stress protein, FMN-binding split barrel domain GO:0048037 G3DSA:2.30.110.10|PF16242|SSF50475 AFA_16745 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007820|IPR017516 AbrB duplication|AbrB family GO:0010468|GO:0016021 PF05145|PIRSF038991|TIGR03082 AFA_16750 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002823 Protein of unknown function DUF112, transmembrane PF01970 AFA_16755 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009936 Protein of unknown function DUF1468 PF07331 AFA_16760 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_16765 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR003661|IPR004358|IPR013727|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal|Two-component sensor kinase, N-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PF08521|PR00344|SM00387|SM00388|SSF47384|SSF55874 AFA_16770 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 AFA_16775 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_16780 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005829|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PS00216|PS00217|SSF103473 AFA_16785 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003010|IPR036526 Carbon-nitrogen hydrolase|Carbon-nitrogen hydrolase superfamily GO:0006807 G3DSA:3.60.110.10|PF00795|SSF56317 AFA_16790 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF13560|SM00530|SSF47413 AFA_16795 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935 AFA_16800 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007418 Protein of unknown function DUF474 PIRSF015875 AFA_16805 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_16810 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_16815 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003773|IPR027024 ABC-type uncharacterised transport system, substrate-binding component, TM0202 type|Menaquinone biosynthesis enzyme G3DSA:3.40.190.10|PF02621|PIRSF027386|SSF53850 AFA_16820 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000595|IPR012318|IPR014710|IPR018490|IPR036388|IPR036390 Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|SM00100|SM00419|SSF46785|SSF51206 AFA_16825 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001486|IPR009050|IPR012292|IPR014710|IPR015392 Domain of unknown function DUF1971|Globin-like superfamily|Globin/Protoglobin|RmlC-like jelly roll fold|Truncated hemoglobin GO:0019825|GO:0020037 G3DSA:1.10.490.10|G3DSA:2.60.120.10|PF01152|PF09313|SSF46458|SSF51197 AFA_16830 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006656|IPR006963|IPR027467 Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, 4Fe-4S domain|Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0016491|GO:0051539|GO:0055114 G3DSA:2.20.25.90|G3DSA:3.40.50.740|PF00384|PF04879|PS00551|SM00926|SSF53706 AFA_16835 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006443|IPR006655|IPR006656|IPR006657|IPR009010 Aspartate decarboxylase-like domain superfamily|Formate dehydrogenase-N, alpha subunit|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0008863|GO:0009055|GO:0016491|GO:0043546|GO:0045333|GO:0047111|GO:0055114 G3DSA:2.40.40.20|G3DSA:3.40.228.10|G3DSA:3.40.50.740|PF00384|PF01568|PS00932|SSF50692|SSF53706|TIGR01553 AFA_16840 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006470|IPR014603|IPR015246|IPR017896|IPR017900|IPR038384 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Formate dehydrogenase iron-sulphur subunit|Formate dehydrogenase iron-sulphur subunit, Proteobacteria|Formate dehydrogenase, C-terminal domain superfamily|Formate dehydrogenase, transmembrane GO:0015944|GO:0016021|GO:0045333|GO:0051539 G3DSA:1.20.5.480|G3DSA:3.30.70.20|PF09163|PF13247|PIRSF036298|PS00198|SSF54862|TIGR01582 AFA_16845 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006471|IPR011577|IPR016174 Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane|Formate dehydrogenase, gamma subunit GO:0008863|GO:0009055|GO:0009326|GO:0016020|GO:0016021|GO:0022904|GO:0045333 G3DSA:1.20.950.20|PF01292|SSF81342|TIGR01583 AFA_16850 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006452|IPR024064 FdhE-like superfamily|Formate dehydrogenase accessory protein GO:0005737 G3DSA:3.90.1670.10|MF_00611|PF04216|PIRSF018296|SSF144020|TIGR01562 AFA_16855 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004534|IPR015421|IPR015424|IPR018319|IPR025862 L-seryl-tRNA selenium transferase N-terminal domain|L-seryl-tRNA selenium transferase-like|L-seryl-tRNA(Sec) selenium transferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major domain GO:0001514|GO:0003824|GO:0004125|GO:0005737 G3DSA:3.40.640.10|G3DSA:3.90.1150.110|MF_00423|PF03841|PF12390|SSF53383|TIGR00474 AFA_16860 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000795|IPR004161|IPR004535|IPR009000|IPR009001|IPR015190|IPR015191|IPR027417|IPR031157|IPR036388|IPR036390 P-loop containing nucleoside triphosphate hydrolase|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal|Translation elongation factor EFTu-like, domain 2|Translation elongation factor SelB, winged helix, type 2|Translation elongation factor SelB, winged helix, type 3|Translation elongation factor, selenocysteine-specific|Translation protein, beta-barrel domain superfamily|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0001514|GO:0003723|GO:0003746|GO:0003924|GO:0005525|GO:0005737 G3DSA:1.10.10.10|G3DSA:1.10.10.2770|G3DSA:2.40.30.10|G3DSA:3.40.50.300|PF00009|PF03144|PF09106|PF09107|PS00301|SSF46785|SSF50447|SSF50465|SSF52540|TIGR00475 AFA_16870 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001387|IPR010982|IPR011051|IPR013096|IPR014710 Cro/C1-type helix-turn-helix domain|Cupin 2, conserved barrel|Lambda repressor-like, DNA-binding domain superfamily|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold GO:0003677|GO:0043565 G3DSA:1.10.260.40|G3DSA:2.60.120.10|PF01381|PF07883|SM00530|SSF47413|SSF51182 AFA_16875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001303|IPR036409 Class II aldolase/adducin N-terminal|Class II aldolase/adducin N-terminal domain superfamily G3DSA:3.40.225.10|PF00596|SM01007|SSF53639 AFA_16880 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004045|IPR004046|IPR036249|IPR036282 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF13417|SSF47616|SSF52833 AFA_16885 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|SSF53850 AFA_16890 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR010917|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, conserved site|TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|PS01156|SSF56935 AFA_16895 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase SSF52151 AFA_16900 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR010105|IPR010917|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, conserved site|TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily|TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|PS01156|SSF56935|TIGR01783 AFA_16905 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004536|IPR010918|IPR016188|IPR023061|IPR036676|IPR036921 PurM-like, C-terminal domain|PurM-like, C-terminal domain superfamily|PurM-like, N-terminal domain|PurM-like, N-terminal domain superfamily|Selenophosphate synthetase|Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 G3DSA:3.30.1330.10|G3DSA:3.90.650.10|MF_00625|PF00586|PF02769|PIRSF036407|SSF55326|SSF56042|TIGR00476 AFA_16910 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001763|IPR017582|IPR036873 Rhodanese-like domain|Rhodanese-like domain superfamily|tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 G3DSA:3.40.250.10|MF_01622|SM00450|SSF52821|TIGR03167 AFA_16915 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007329|IPR011399|IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain|FMN-binding|Nitrous oxide reductase expression regulator NosR GO:0003677|GO:0010181|GO:0016020|GO:0045893 PF12801|PIRSF036354|SM00900|SSF54862 AFA_16920 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008972|IPR011045|IPR015943|IPR023644 Cupredoxin|Nitrous oxide reductase, N-terminal|Nitrous-oxide reductase|WD40/YVTN repeat-like-containing domain superfamily GO:0005507|GO:0005509|GO:0005515|GO:0050304|GO:0055114 G3DSA:2.130.10.10|G3DSA:2.60.40.420|SSF49503|SSF50974|TIGR04244 AFA_16925 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006626|IPR006633|IPR007742|IPR011050|IPR012334|IPR026464 Carbohydrate-binding/sugar hydrolysis domain|Nitrous oxide reductase family maturation protein NosD|Parallel beta-helix repeat|Pectin lyase fold|Pectin lyase fold/virulence factor|Periplasmic copper-binding protein NosD, beta helix domain G3DSA:2.160.20.10|PF05048|SM00710|SM00722|SSF51126|TIGR04247 AFA_16930 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_16935 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR032688 ABC-2 family transporter protein GO:0055085 PF12679 AFA_16940 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008719 Nitrous oxide reductase accessory protein NosL G3DSA:3.30.70.2050|G3DSA:3.30.70.2060|PF05573|SSF160387 AFA_16945 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003374|IPR024932 ApbE-like superfamily|Flavin transferase ApbE GO:0017013 G3DSA:3.10.520.20|PF02424|PIRSF006268|SSF143631 AFA_16950 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001672|IPR018189|IPR023096 Phosphoglucose isomerase (PGI)|Phosphoglucose isomerase, C-terminal|Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 G3DSA:1.10.1390.10|G3DSA:3.40.50.10490|MF_00473|PF00342|PR00662|PS00174|PS00765|SSF53697 AFA_16955 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR037914 SpoVT-AbrB domain superfamily G3DSA:2.10.260.10|SSF89447 AFA_16960 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002716|IPR029060 PIN domain|PIN-like domain superfamily G3DSA:3.40.50.1010|PF01850|SSF88723 AFA_16965 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000917|IPR017849|IPR017850 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain superfamily|Sulfatase, N-terminal GO:0003824|GO:0008484 G3DSA:3.40.720.10|PF00884|SSF53649 AFA_16970 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00081|PS00061|SSF51735 AFA_16975 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029044 Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF13641|SSF53448 AFA_16980 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic PF13524 AFA_16985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF13579|PF13692|SSF53756 AFA_16990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 G3DSA:3.20.20.370|SSF88713 AFA_16995 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 G3DSA:3.20.20.370|SSF88713 AFA_17000 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029044 Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|SSF53448 AFA_17005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001173|IPR024542|IPR029044 Domain of unknown function DUF3880|Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases G3DSA:3.40.50.2000|G3DSA:3.90.550.10|PF00535|PF12996|PF13524|SSF53448 AFA_17010 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001732|IPR008927|IPR014026|IPR014027|IPR017476|IPR028359|IPR036220|IPR036291 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily|UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase|UDP-glucose/GDP-mannose dehydrogenase|UDP-glucose/GDP-mannose dehydrogenase, C-terminal|UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily|UDP-glucose/GDP-mannose dehydrogenase, N-terminal|UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0000271|GO:0016616|GO:0016628|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF00984|PF03720|PF03721|PIRSF000124|PIRSF500136|SM00984|SSF48179|SSF51735|SSF52413|TIGR03026 AFA_17015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003331|IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like|UDP-N-acetylglucosamine 2-epimerase domain GO:0008761 G3DSA:3.40.50.2000|PF02350|SSF53756|TIGR00236 AFA_17020 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:3.40.50.150 AFA_17030 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_17035 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000412|IPR013525 ABC-2 transporter|ABC-2 type transporter GO:0016020|GO:0016021|GO:0043190|GO:0055085 PF01061|PR00164 AFA_17040 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 G3DSA:3.10.560.10|G3DSA:3.30.1950.10|PF02563 AFA_17045 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|SSF53383 AFA_17050 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001227|IPR002364|IPR009081|IPR011032|IPR013149|IPR013968|IPR014030|IPR014031|IPR014043|IPR016035|IPR016036|IPR016039|IPR018201|IPR020801|IPR020806|IPR020807|IPR020841|IPR020843|IPR029063|IPR032821|IPR036291|IPR036736 ACP-like superfamily|Acyl transferase|Acyl transferase domain superfamily|Acyl transferase/acyl hydrolase/lysophospholipase|Alcohol dehydrogenase, C-terminal|Beta-ketoacyl synthase, C-terminal|Beta-ketoacyl synthase, N-terminal|Beta-ketoacyl synthase, active site|GroES-like superfamily|Ketoacyl-synthetase, C-terminal extension|Malonyl-CoA ACP transacylase, ACP-binding|NAD(P)-binding domain superfamily|Phosphopantetheine binding ACP domain|Polyketide synthase, acyl transferase domain|Polyketide synthase, beta-ketoacyl synthase domain|Polyketide synthase, dehydratase domain|Polyketide synthase, enoylreductase domain|Polyketide synthase, ketoreductase domain|Polyketide synthase, phosphopantetheine-binding domain|Quinone oxidoreductase/zeta-crystallin, conserved site|S-adenosyl-L-methionine-dependent methyltransferase|Thiolase-like GO:0003824|GO:0008270|GO:0016491|GO:0016740|GO:0031177|GO:0055114 G3DSA:1.10.1200.10|G3DSA:3.10.129.110|G3DSA:3.30.70.3290|G3DSA:3.40.366.10|G3DSA:3.40.47.10|G3DSA:3.40.50.150|G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF00109|PF00550|PF00698|PF02801|PF08659|PF13489|PF14765|PF16197|PS00606|PS01162|SM00822|SM00823|SM00825|SM00826|SM00827|SM00829|SM01294|SSF47336|SSF50129|SSF51735|SSF52151|SSF53335|SSF53901|SSF55048 AFA_17055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006042|IPR006043 Xanthine/uracil permease|Xanthine/uracil/vitamin C permease GO:0005215|GO:0016020|GO:0022857|GO:0055085 PF00860|TIGR00801 AFA_17060 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 AFA_17065 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR004839|IPR015421|IPR015422|IPR015424|IPR036388|IPR036390 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0003824|GO:0006355|GO:0009058|GO:0030170 G3DSA:1.10.10.10|G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PF00392|SM00345|SSF46785|SSF53383 AFA_17070 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 AFA_17080 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002155|IPR016039|IPR020610|IPR020613|IPR020615|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|PS00737|SSF53901|TIGR01930 AFA_17085 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001753|IPR006108|IPR006176|IPR008927|IPR013328|IPR029045|IPR036291 3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase|NAD(P)-binding domain superfamily GO:0003824|GO:0003857|GO:0006631|GO:0016491|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|G3DSA:3.90.226.10|PF00378|PF00725|PF02737|SSF48179|SSF51735|SSF52096 AFA_17090 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003370 Chromate transporter GO:0015109|GO:0015703 PF02417 AFA_17095 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003370 Chromate transporter GO:0015109|GO:0015703 PF02417 AFA_17100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_17105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003453|IPR030802 ABC transport permease subunit MlaE, Proteobacteria|ABC transporter permease MalE GO:0043190 PF02405|TIGR00056 AFA_17110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003399|IPR030970 Mce/MlaD|Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 PF02470|TIGR04430 AFA_17115 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007428 MlaA lipoprotein GO:0016020 PF04333|PR01805 AFA_17120 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC G3DSA:1.10.10.640|G3DSA:3.10.450.50|PF05494|PIRSF004649 AFA_17125 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_17130 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000412|IPR013525 ABC-2 transporter|ABC-2 type transporter GO:0016020|GO:0016021|GO:0043190|GO:0055085 PF01061|PIRSF006648|PR00164 AFA_17135 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002634|IPR036065 BolA protein|BolA-like superfamily G3DSA:3.30.300.90|PF01722|PIRSF003113|SSF82657 AFA_17140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001986|IPR005750|IPR013792|IPR036968 Enolpyruvate transferase domain|Enolpyruvate transferase domain superfamily|RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta|UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0003824|GO:0008760|GO:0016765|GO:0019277 G3DSA:3.65.10.10|MF_00111|PF00275|SSF55205|TIGR01072 AFA_17145 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013820|IPR018198|IPR024893 ATP phosphoribosyltransferase HisG, short form|ATP phosphoribosyltransferase, catalytic domain|ATP phosphoribosyltransferase, conserved site GO:0000105|GO:0003879|GO:0005737 G3DSA:3.40.190.10|MF_01018|PF01634|PS01316|SSF53850|TIGR00070 AFA_17150 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001692|IPR012131|IPR016161|IPR022695 Aldehyde/histidinol dehydrogenase|Histidinol dehydrogenase|Histidinol dehydrogenase, conserved site|Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0016491|GO:0051287|GO:0055114 G3DSA:3.40.50.1980|MF_01024|PF00815|PIRSF000099|PR00083|PS00611|SSF53720|TIGR00069 AFA_17155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000807|IPR020565|IPR020568|IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily|Imidazoleglycerol-phosphate dehydratase|Imidazoleglycerol-phosphate dehydratase, conserved site|Ribosomal protein S5 domain 2-type fold GO:0000105|GO:0004424 G3DSA:3.30.230.40|MF_00076|PF00475|PS00954|PS00955|SSF54211 AFA_17160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010139|IPR017926|IPR029062 Class I glutamine amidotransferase-like|Glutamine amidotransferase|Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 G3DSA:3.40.50.880|MF_00278|PF00117|PIRSF000495|SSF52317|TIGR01855 AFA_17165 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006062|IPR006063|IPR011060|IPR013785|IPR023016 Aldolase-type TIM barrel|Histidine biosynthesis|Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase|Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA|Ribulose-phosphate binding barrel GO:0000105|GO:0003824|GO:0003949 G3DSA:3.20.20.70|MF_01014|PF00977|SSF51366|TIGR00007 AFA_17170 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004651|IPR006062|IPR011060|IPR013785 Aldolase-type TIM barrel|Histidine biosynthesis|Histidine biosynthesis, HisF|Ribulose-phosphate binding barrel GO:0000105|GO:0000107|GO:0003824|GO:0005737 G3DSA:3.20.20.70|MF_01013|PF00977|SSF51366|TIGR00735 AFA_17175 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002496|IPR026660|IPR038019 Phosphoribosyl-AMP cyclohydrolase|Phosphoribosyl-AMP cyclohydrolase domain|Phosphoribosyl-AMP cyclohydrolase domain superfamily GO:0000105|GO:0004635 G3DSA:3.10.20.400|MF_01021|PD002610|PF01502|SSF141734 AFA_17180 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008179|IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase|Phosphoribosyl-ATP pyrophosphohydrolase-like GO:0000105|GO:0004636 G3DSA:1.10.287.1080|MF_01020|PF01503|SSF101386|TIGR03188 AFA_17185 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001310|IPR019808|IPR036265 HIT-like superfamily|Histidine triad (HIT) protein|Histidine triad, conserved site G3DSA:3.30.428.10|PF01230|PR00332|PS00892|SSF54197 AFA_17190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003369|IPR006312 Sec-independent protein translocase protein TatA/B/E|Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 MF_00236|PF02416|TIGR01411 AFA_17195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003369|IPR018448 Sec-independent protein translocase protein TatA/B/E|Twin-arginine translocation protein TatB GO:0008565|GO:0015031|GO:0016020|GO:0043953 G3DSA:1.20.120.20|MF_00237|PF02416|PR01506|TIGR01410 AFA_17200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 MF_00902|PF00902|PR01840|TIGR00945 AFA_17205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001478|IPR001940|IPR009003|IPR036034 PDZ domain|PDZ superfamily|Peptidase S1, PA clan|Peptidase S1C GO:0004252|GO:0005515|GO:0006508 G3DSA:2.30.42.10|G3DSA:2.40.10.120|PF13180|PF13365|PR00834|SM00228|SSF50156|SSF50494 AFA_17210 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002678|IPR036069 GTP cyclohydrolase 1 type 2/Nif3|GTP cyclohydrolase 1 type 2/Nif3 superfamily G3DSA:3.40.1390.30|PF01784|SSF102705|TIGR00486 AFA_17215 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001185|IPR019823|IPR036019|IPR037673 Gated mechanosensitive channel|Large-conductance mechanosensitive channel|Large-conductance mechanosensitive channel, conserved site|Large-conductance mechanosensitive channel/anditomin synthesis protein L GO:0008381|GO:0016021|GO:0034220 G3DSA:1.10.1200.120|MF_00115|PF01741|PR01264|PS01327|SSF81330|TIGR00220 AFA_17220 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005805|IPR006317|IPR017941|IPR036922 Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily|Rieske iron-sulphur protein, C-terminal|Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0016020|GO:0016491|GO:0051537|GO:0055114 G3DSA:2.102.10.10|PF00355|PR00162|SSF50022|TIGR01416 AFA_17225 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005797|IPR005798|IPR016174|IPR027387|IPR030689|IPR036150 Cytochrome b|Cytochrome b/b6, C-terminal|Cytochrome b/b6, C-terminal domain superfamily|Cytochrome b/b6, N-terminal|Cytochrome b/b6-like domain superfamily|Di-haem cytochrome, transmembrane GO:0006122|GO:0008121|GO:0009055|GO:0016020|GO:0016491|GO:0022904|GO:0045275 G3DSA:1.20.810.10|PF00032|PF00033|PIRSF038885|SSF81342|SSF81648 AFA_17230 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002326|IPR036909 Cytochrome c-like domain superfamily|Cytochrome c1 GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF02167|SSF46626 AFA_17235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004045|IPR036249|IPR036282 Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF13410|PF13417|SSF47616|SSF52833 AFA_17240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007481|IPR036760 SspB-like superfamily|Stringent starvation protein B G3DSA:2.30.30.220|PF04386|PIRSF005276|SSF101738 AFA_17245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR005667|IPR011866|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Sulphate ABC transporter permease protein 2|Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0015419|GO:0016020|GO:0016021|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR00969|TIGR02140 AFA_17250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR005667|IPR011865|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Sulphate ABC transporter permease protein 2|Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0015419|GO:0016020|GO:0016021|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR00969|TIGR02139 AFA_17255 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005669|IPR034408 Sulphate/thiosulphate-binding site|Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419|GO:1901681 G3DSA:3.40.190.10|PF13531|PS00757|SSF53850|TIGR00971 AFA_17270 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|SSF52540 AFA_17275 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001296 Glycosyl transferase, family 1 G3DSA:3.40.50.2000|PF00534|SSF53756 AFA_17280 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006913|IPR011057 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V|Mss4-like superfamily GO:0016846 G3DSA:2.170.150.70|PF04828|SSF51316 AFA_17285 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006139|IPR006140|IPR036291 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain superfamily GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF00389|PF02826|SSF51735|SSF52283 AFA_17290 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011008|IPR012577 Dimeric alpha-beta barrel|NIPSNAP G3DSA:3.30.70.100|PF07978|SSF54909 AFA_17295 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 AFA_17300 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 AFA_17305 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480 AFA_17310 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001509|IPR036291 NAD(P)-binding domain superfamily|NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF01370|SSF51735 AFA_17315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013022|IPR026040|IPR036237 Hydroxypyruvate isomerase-like|Xylose isomerase-like superfamily|Xylose isomerase-like, TIM barrel domain G3DSA:3.20.20.150|PF01261|PIRSF006241|SSF51658 AFA_17320 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006115|IPR008927|IPR013328|IPR015815|IPR029154|IPR036291 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0016491|GO:0050661|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|SSF48179|SSF51735 AFA_17325 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000581|IPR004404|IPR020558|IPR037237 Dihydroxy-acid dehydratase|Dihydroxy-acid/6-phosphogluconate dehydratase|Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site|IlvD/EDD, N-terminal domain GO:0003824|GO:0004160|GO:0009082 G3DSA:3.50.30.80|MF_00012|PF00920|PS00886|PS00887|SSF143975|SSF52016|TIGR00110 AFA_17330 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|SM00345|SM00895|SSF46785|SSF48008 AFA_17335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000485|IPR011008|IPR019885|IPR019887|IPR019888|IPR036388|IPR036390 AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Transcription regulator HTH, AsnC-type, conserved site|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13412|PR00033|PS00519|SM00344|SSF46785|SSF54909 AFA_17340 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004981|IPR017485|IPR037217 Tryptophan 2,3-dioxygenase|Tryptophan 2,3-dioxygenase, bacterial|Tryptophan/Indoleamine 2,3-dioxygenase-like GO:0004833|GO:0019441|GO:0020037|GO:0046872 G3DSA:1.20.58.480|MF_01972|PF03301|SSF140959|TIGR03036 AFA_17345 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013094|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-3 GO:0016787 G3DSA:3.40.50.1820|PF07859|SSF53474 AFA_17350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006175|IPR035959 RutC-like superfamily|YjgF/YER057c/UK114 family G3DSA:3.30.1330.40|PF01042|SSF55298 AFA_17355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_17360 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003700|IPR015813 Ketopantoate hydroxymethyltransferase|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824|GO:0003864|GO:0015940 G3DSA:3.20.20.60|MF_00156|PF02548|PIRSF000388|SSF51621|TIGR00222 AFA_17365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018170|IPR020471|IPR023210|IPR036812 Aldo/keto reductase|Aldo/keto reductase, conserved site|NADP-dependent oxidoreductase domain|NADP-dependent oxidoreductase domain superfamily GO:0016491|GO:0055114 G3DSA:3.20.20.100|PF00248|PIRSF000097|PR00069|PS00062|PS00798|SSF51430 AFA_17370 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|G3DSA:1.20.1720.10|PF07690|SSF103473 AFA_17375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000573|IPR001030|IPR006249|IPR015928|IPR015931|IPR018136|IPR036008 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase family, 4Fe-4S cluster binding site|Aconitase, iron-sulfur domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase, swivel|Aconitase/Iron-responsive element-binding protein 2 G3DSA:1.10.1440.20|G3DSA:3.20.19.10|G3DSA:3.30.499.10|G3DSA:3.30.499.20|PF00330|PF00694|PR00415|PS00450|PS01244|SSF52016|SSF53732|TIGR01341 AFA_17380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000160|IPR029151|IPR029787|IPR033479 Double Cache domain 1|GGDEF domain|Nucleotide cyclase|Periplasmic sensor-like domain superfamily G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00990|PF02743|SM00267|SSF103190|SSF55073|TIGR00254 AFA_17385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016718|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 G3DSA:3.40.50.150|PF13649|PIRSF018249|SSF53335 AFA_17390 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007709|IPR010247 N-formylglutamate amidohydrolase|N-formylglutamate deformylase G3DSA:3.40.630.40|PF05013|SSF53187|TIGR02017 AFA_17395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003010|IPR036526 Carbon-nitrogen hydrolase|Carbon-nitrogen hydrolase superfamily GO:0006807 G3DSA:3.60.110.10|PF00795|SSF56317 AFA_17400 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012338 Beta-lactamase/transpeptidase-like G3DSA:3.40.710.10|PF13354|SSF56601 AFA_17410 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011059|IPR013108|IPR023100|IPR032466 Amidohydrolase 3|D-aminoacylase, insert domain superfamily|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain superfamily GO:0016810|GO:0016811 G3DSA:2.30.40.10|G3DSA:3.20.20.140|G3DSA:3.30.1490.130|PF07969|SSF51338|SSF51556 AFA_17415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 AFA_17420 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002347|IPR011284|IPR020904|IPR036291 3-oxoacyl-(acyl-carrier-protein) reductase|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0004316|GO:0006633|GO:0016491|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SM00822|SSF51735|TIGR01830 AFA_17425 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000868|IPR036380 Isochorismatase-like|Isochorismatase-like superfamily GO:0003824 G3DSA:3.40.50.850|PF00857|SSF52499 AFA_17430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003829|IPR008778|IPR011051|IPR012093|IPR014710 Pirin|Pirin, C-terminal domain|Pirin, N-terminal domain|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF02678|PF05726|PIRSF006232|SSF51182 AFA_17435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 AFA_17440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR008462|IPR026042|IPR036629 CsbD-like domain|Stress response protein YjbJ|YjbJ superfamily G3DSA:1.10.1470.10|PF05532|PIRSF039008|SSF69047 AFA_17445 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007055|IPR014004 BON domain|Transport-associated and nodulation domain, bacteria PF04972|SM00749 AFA_17450 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR032710|IPR036188 FAD/NAD(P)-binding domain superfamily|NTF2-like domain superfamily G3DSA:3.10.450.50|G3DSA:3.50.50.60|PF13738|PR00411|SSF51905|SSF54427 AFA_17455 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002078|IPR002197|IPR003018|IPR003593|IPR009057|IPR025662|IPR025943|IPR025944|IPR027417|IPR029016 AAA+ ATPase domain|DNA binding HTH domain, Fis-type|GAF domain|GAF-like domain superfamily|Homeobox-like domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site GO:0003677|GO:0005515|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.450.40|G3DSA:3.40.50.300|PF00158|PF01590|PF02954|PR01590|PS00675|PS00676|PS00688|SM00382|SSF46689|SSF52540|SSF55781 AFA_17460 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012893|IPR017508 HipA, N-terminal subdomain 1|HipA-like, C-terminal PF07804|PF13657 AFA_17470 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011044|IPR015943 Quinoprotein amine dehydrogenase, beta chain-like|WD40/YVTN repeat-like-containing domain superfamily GO:0005515 G3DSA:2.130.10.10|SSF50969 AFA_17475 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR010105|IPR011662|IPR012910|IPR036942|IPR037066 Secretin/TonB, short N-terminal domain|TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily|TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0019867|GO:0038023 G3DSA:2.170.130.10|G3DSA:2.40.170.20|G3DSA:3.55.50.30|PF00593|PF07660|PF07715|SM00965|SSF56935|TIGR01783 AFA_17480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006860|IPR012373|IPR032623 Fe(2+)-dicitrate sensor, transmembrane component|FecR protein|FecR, N-terminal G3DSA:2.60.120.1440|PF04773|PF16220|PIRSF018266 AFA_17485 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007627|IPR013249|IPR013324|IPR013325|IPR014284|IPR036388 RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF04542|PF08281|SSF88659|SSF88946|TIGR02937 AFA_17495 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001347|IPR005855|IPR029055 Glucosamine-fructose-6-phosphate aminotransferase, isomerising|Nucleophile aminohydrolases, N-terminal|Sugar isomerase (SIS) GO:0004360|GO:0097367|GO:1901135|GO:1901137 G3DSA:3.40.50.10490|G3DSA:3.60.20.10|MF_00164|PF01380|PF13522|SSF53697|SSF56235|TIGR01135 AFA_17500 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000485|IPR011008|IPR019887|IPR019888|IPR036388|IPR036390 AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13412|PR00033|SM00344|SSF46785|SSF54909 AFA_17510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001296|IPR028098 Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF00534|PF13439|SSF53756 AFA_17515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001451|IPR005882|IPR011004|IPR025877|IPR029044 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase|Hexapeptide repeat|MobA-like NTP transferase|Nucleotide-diphospho-sugar transferases|Trimeric LpxA-like superfamily GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 G3DSA:2.160.10.10|G3DSA:3.90.550.10|MF_01631|PF00132|PF12804|SSF51161|SSF53448|TIGR01173 AFA_17525 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000086|IPR015797|IPR031804 Domain of unknown function DUF4743|NUDIX hydrolase domain|NUDIX hydrolase-like domain superfamily GO:0016787 G3DSA:3.30.750.160|G3DSA:3.90.79.10|PF00293|PF15916|SSF55811 AFA_17530 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001505|IPR002429|IPR008972|IPR009056|IPR011759|IPR014222|IPR036257|IPR036909 Copper centre Cu(A)|Cupredoxin|Cytochrome C oxidase subunit II, transmembrane domain|Cytochrome C oxidase subunit II, transmembrane domain superfamily|Cytochrome c oxidase subunit II-like C-terminal|Cytochrome c oxidase, subunit II|Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0004129|GO:0005507|GO:0009055|GO:0016020|GO:0016021|GO:0016491|GO:0020037|GO:0022900 G3DSA:1.10.287.90|G3DSA:1.10.760.10|G3DSA:2.60.40.420|PF00116|PF02790|PF13442|PR01166|PS00078|SSF46626|SSF49503|SSF81464|TIGR02866 AFA_17535 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000883|IPR014241|IPR023615|IPR036927 Cytochrome c oxidase subunit I|Cytochrome c oxidase, subunit I bacterial type|Cytochrome c oxidase, subunit I, copper-binding site|Cytochrome c oxidase-like, subunit I superfamily GO:0004129|GO:0005886|GO:0009060|GO:0015990|GO:0016021|GO:0020037|GO:0055114 G3DSA:1.20.210.10|PF00115|PR01165|PS00077|SSF81442|TIGR02891 AFA_17540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021344 Protein of unknown function DUF2970 PF11174 AFA_17545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000298|IPR013833|IPR035973 Cytochrome c oxidase subunit III-like|Cytochrome c oxidase subunit III-like superfamily|Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0015002|GO:0016020|GO:0022904 G3DSA:1.10.287.70|G3DSA:1.20.120.80|PF00510|SSF81452 AFA_17550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021313 Protein of unknown function DUF2909 PF11137 AFA_17555 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002994 Surfeit locus 1/Shy1 GO:0016020 PF02104 AFA_17560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR036249 Thioredoxin-like superfamily G3DSA:3.40.30.10|SSF52833 AFA_17565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 PF02628 AFA_17570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000537|IPR006369|IPR030470 Protohaem IX farnesyltransferase|UbiA prenyltransferase conserved site|UbiA prenyltransferase family GO:0008495|GO:0016021|GO:0016765|GO:0048034 G3DSA:1.10.357.140|MF_00154|PF01040|PS00943|TIGR01473 AFA_17575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009057|IPR011051|IPR014710|IPR018060|IPR020449 DNA binding HTH domain, AraC-type|Homeobox-like domain superfamily|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold|Transcription regulator HTH, AraC- type GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:2.60.120.10|PF12833|PR00032|SM00342|SSF46689|SSF51182 AFA_17595 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000531|IPR010100|IPR012910|IPR036942|IPR037066 TonB-dependent copper receptor|TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935|TIGR01778 AFA_17600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000943|IPR007627|IPR007630|IPR009042|IPR012759|IPR013324|IPR013325|IPR014284 RNA polymerase sigma factor RpoH, proteobacteria|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 1.2|RNA polymerase sigma-70 region 2|RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.601.10|G3DSA:1.20.140.160|MF_00961|PF00140|PF04542|PF04545|PR00046|PS00715|PS00716|SSF88659|SSF88946|TIGR02392|TIGR02937 AFA_17605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000801|IPR014186|IPR029058 Alpha/Beta hydrolase fold|Putative esterase|S-formylglutathione hydrolase GO:0018738|GO:0046294 G3DSA:3.40.50.1820|PF00756|SSF53474|TIGR02821 AFA_17610 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002328|IPR011032|IPR013149|IPR013154|IPR014183|IPR020843|IPR036291 Alcohol dehydrogenase class III|Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|Alcohol dehydrogenase, zinc-type, conserved site|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain GO:0006069|GO:0008270|GO:0016491|GO:0051903|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PS00059|SM00829|SSF50129|SSF51735|TIGR02818 AFA_17615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001736|IPR025202|IPR030872 Cardiolipin synthase B|Phospholipase D-like domain|Phospholipase D/Transphosphatidylase GO:0003824|GO:0008808|GO:0032049 G3DSA:3.30.870.10|MF_01917|PF13091|SM00155|SSF56024 AFA_17620 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005135|IPR036691 Endonuclease/exonuclease/phosphatase|Endonuclease/exonuclease/phosphatase superfamily PF03372|SSF56219 AFA_17625 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002312|IPR004115|IPR004364|IPR004365|IPR004524|IPR012340|IPR029351 Aminoacyl-tRNA synthetase, class II (D/K/N)|Aspartate-tRNA ligase, type 1|Aspartyl/Asparaginyl-tRNA synthetase, class IIb|GAD domain|GAD-like domain superfamily|Nucleic acid-binding, OB-fold|OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0000166|GO:0003676|GO:0004812|GO:0005524|GO:0005737|GO:0006418|GO:0016874 G3DSA:2.40.50.140|G3DSA:3.30.1360.30|G3DSA:3.30.930.10|MF_00044|PF00152|PF01336|PF02938|PR01042|SSF50249|SSF55261|SSF55681|TIGR00459 AFA_17630 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007462 Protein of unknown function DUF502 PF04367 AFA_17635 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain PF09723|SM00834|TIGR02605 AFA_17640 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009978 Putative Na+/H+ antiporter PF07399 AFA_17645 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000537|IPR006370|IPR030470 4-hydroxybenzoate polyprenyltransferase-like|UbiA prenyltransferase conserved site|UbiA prenyltransferase family GO:0004659|GO:0016021|GO:0016765 G3DSA:1.10.357.140|G3DSA:1.20.120.1780|MF_01635|PF01040|PS00943|TIGR01474 AFA_17650 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|SSF53383 AFA_17655 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010282|IPR011051|IPR014710 RmlC-like cupin domain superfamily|RmlC-like jelly roll fold|Uncharacterised protein family HutD/Ves G3DSA:2.60.120.10|PF05962|SSF51182 AFA_17660 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005920|IPR006680|IPR011059|IPR032466 Amidohydrolase-related|Imidazolonepropionase|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain superfamily GO:0005737|GO:0016787|GO:0016810|GO:0016812|GO:0019556 G3DSA:2.30.40.10|G3DSA:3.20.20.140|MF_00372|PF01979|SSF51338|SSF51556|TIGR01224 AFA_17665 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006680|IPR010252|IPR011059|IPR032466 Amidohydrolase-related|Formiminoglutamate deiminase|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain superfamily GO:0016787|GO:0016810 G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF01979|SSF51338|SSF51556|TIGR02022 AFA_17670 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SSF47413 AFA_17680 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001106|IPR005921|IPR008948|IPR022313|IPR024083 Aromatic amino acid lyase|Fumarase/histidase, N-terminal|Histidine ammonia-lyase|L-Aspartase-like|Phenylalanine/histidine ammonia-lyases, active site GO:0003824|GO:0004397|GO:0005737|GO:0006548|GO:0016841 G3DSA:1.10.275.10|G3DSA:1.20.200.10|MF_00229|PF00221|PS00488|SSF48557|TIGR01225 AFA_17685 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR023636|IPR023637|IPR035085|IPR035400|IPR035401|IPR036190|IPR038364 Urocanase|Urocanase conserved site|Urocanase superfamily|Urocanase, C-terminal domain|Urocanase, N-terminal domain|Urocanase, Rossmann-like domain|Urocanase, central domain superfamily GO:0016153 G3DSA:3.40.1770.10|G3DSA:3.40.50.10730|MF_00577|PF01175|PF17391|PF17392|PIRSF001423|PS01233|SSF111326|TIGR01228 AFA_17690 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR010248|IPR011663|IPR028978|IPR036388|IPR036390 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily|Histidine utilization repressor|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0006547|GO:0045892 G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|SM00345|SM00866|SSF46785|SSF64288|TIGR02018 AFA_17695 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009057|IPR018060|IPR037923 DNA binding HTH domain, AraC-type|Homeobox-like domain superfamily|Transcription regulator HTH-like GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12833|SM00342|SSF46689|SSF51215 AFA_17700 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF13302|SSF55729 AFA_17705 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR021329 Protein of unknown function DUF2938 PF11158 AFA_17710 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000551|IPR009061 MerR-type HTH domain|Putative DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.1660.10|PF13411|SM00422|SSF46955 AFA_17715 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004812|IPR011701|IPR036259 Drug resistance transporter Bcr/CmlA subfamily|MFS transporter superfamily|Major facilitator superfamily GO:0006855|GO:0015238|GO:0016021|GO:0055085 G3DSA:1.20.1720.10|PF07690|SSF103473|TIGR00710 AFA_17720 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF00583|SSF55729 AFA_17725 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005829|IPR011251|IPR020020|IPR036661 Luciferase-like domain|Luciferase-like domain superfamily|Luciferase-type oxidoreductase|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0016705|GO:0055085|GO:0055114 G3DSA:3.20.20.30|PF00296|PS00217|SSF51679|TIGR03571 AFA_17730 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004045|IPR004046|IPR036249|IPR036282 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF02798|SSF47616|SSF52833 AFA_17735 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 AFA_17740 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001041|IPR001433|IPR001834|IPR008333|IPR012675|IPR017938|IPR036010|IPR039261 2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain|NADH:cytochrome b5 reductase (CBR)|Oxidoreductase FAD/NAD(P)-binding|Riboflavin synthase-like beta-barrel GO:0009055|GO:0016491|GO:0051536|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00111|PF00175|PF00970|PR00406|SSF52343|SSF54292|SSF63380 AFA_17745 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR017941|IPR036922 Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 G3DSA:2.102.10.10|G3DSA:3.30.530.90|PF00355|SSF50022|SSF55961 AFA_17750 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 AFA_17755 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000796|IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Aspartate/other aminotransferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0006520|GO:0008483|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PR00799|SSF53383 AFA_17760 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016130|IPR026893|IPR029021 Protein-tyrosine phosphatase, active site|Protein-tyrosine phosphatase-like|Tyrosine/serine-protein phosphatase IphP-type GO:0004725|GO:0016311 G3DSA:3.90.190.10|PF13350|PS00383|SSF52799 AFA_17765 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001279|IPR036866 Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like G3DSA:3.60.15.10|PF12706|SM00849|SSF56281 AFA_17775 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002678|IPR036069 GTP cyclohydrolase 1 type 2/Nif3|GTP cyclohydrolase 1 type 2/Nif3 superfamily G3DSA:3.40.1390.30|PF01784|SSF102705 AFA_17785 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003462|IPR023401|IPR036291 NAD(P)-binding domain superfamily|Ornithine cyclodeaminase, N-terminal|Ornithine cyclodeaminase/mu-crystallin G3DSA:3.30.1780.10|G3DSA:3.40.50.720|PF02423|PIRSF001439|SSF51735 AFA_17790 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001041|IPR006058|IPR012675|IPR036010 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily GO:0009055|GO:0051536|GO:0051537 G3DSA:3.10.20.30|PF00111|PS00197|SSF54292 AFA_17800 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001041|IPR012675|IPR036010 2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily GO:0009055|GO:0051536 G3DSA:3.10.20.30|PF00111|SSF54292 AFA_17810 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001041|IPR001221|IPR001433|IPR001709|IPR006058|IPR008333|IPR012675|IPR017938|IPR036010|IPR039261 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Flavoprotein pyridine nucleotide cytochrome reductase|Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain|Oxidoreductase FAD/NAD(P)-binding|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel GO:0009055|GO:0016491|GO:0051536|GO:0051537|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00111|PF00175|PF00970|PR00371|PR00410|PS00197|SSF52343|SSF54292|SSF63380 AFA_17815 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005624|IPR038084 GlcG-like domain superfamily|Haem-degrading G3DSA:3.30.450.150|PF03928|SSF143744 AFA_17820 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR029510 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|SSF53720 AFA_17825 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016084 Haem oxygenase-like, multi-helical G3DSA:1.20.910.10|PF14518|SM01236|SSF48613 AFA_17830 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR029055 Nucleophile aminohydrolases, N-terminal G3DSA:3.60.20.40|PF01019|PR01210|SSF56235 AFA_17840 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002781 Transmembrane protein TauE-like GO:0016021 PF01925 AFA_17845 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|SM00345|SM00895|SSF46785|SSF48008 AFA_17850 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001647|IPR009057 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PR00455|SSF46689 AFA_17855 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001958|IPR004812|IPR011701|IPR036259 Drug resistance transporter Bcr/CmlA subfamily|MFS transporter superfamily|Major facilitator superfamily|Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215|GO:0006855|GO:0015238|GO:0016021|GO:0055085 G3DSA:1.20.1720.10|PF07690|PR01035|SSF103473|TIGR00710 AFA_17860 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002024|IPR008331|IPR009078|IPR012347|IPR014490 Bacterioferritin|DNA-binding protein from starved cells-like|Ferritin-like|Ferritin-like superfamily|Ferritin/DPS protein domain GO:0006826|GO:0006879|GO:0008199 G3DSA:1.20.1260.10|PF00210|PIRSF018063|PR00601|SSF47240 AFA_17870 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 AFA_17875 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000424|IPR011344|IPR012340 Nucleic acid-binding, OB-fold|Primosome PriB/single-strand DNA-binding|Single-stranded DNA-binding protein GO:0003697|GO:0006260 G3DSA:2.40.50.140|MF_00984|PF00436|PIRSF002070|SSF50249|TIGR00621 AFA_17880 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005829|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PS00216|SSF103473 AFA_17885 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004602|IPR017871|IPR027417 ABC transporter, conserved site|P-loop containing nucleoside triphosphate hydrolase|UvrABC system subunit A GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 G3DSA:1.20.1580.10|G3DSA:3.40.50.300|MF_00205|PS00211|SSF52540|TIGR00630 AFA_17890 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003607|IPR006261|IPR006674|IPR023023|IPR026875 HD domain|HD/PDEase domain|Phosphohydrolase-associated domain|dNTP triphosphohydrolase|dNTP triphosphohydrolase, type 2 GO:0016793 G3DSA:1.10.3210.10|MF_01212|PF01966|PF13286|SM00471|SSF109604|TIGR01353 AFA_17895 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016037|IPR030960|IPR030963 3-dehydroquinate synthase AroB|3-dehydroquinate synthase domain|3-dehydroquinate synthase family GO:0003856|GO:0005737|GO:0009073|GO:0016838 G3DSA:1.20.1090.10|G3DSA:3.40.50.1970|MF_00110|PF01761|PIRSF001455|SSF56796|TIGR01357 AFA_17900 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000623|IPR023000|IPR027417|IPR031322 P-loop containing nucleoside triphosphate hydrolase|Shikimate kinase, conserved site|Shikimate kinase/Threonine synthase-like 1|Shikimate kinase/gluconokinase G3DSA:3.40.50.300|MF_00109|PF01202|PR01100|PS01128|SSF52540 AFA_17905 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001264|IPR001460|IPR012338|IPR023346|IPR031376|IPR036950 Beta-lactamase/transpeptidase-like|Glycosyl transferase, family 51|Lysozyme-like domain superfamily|Penicillin binding protein transglycosylase domain|Penicillin-binding protein, OB-like domain|Penicillin-binding protein, transpeptidase GO:0008658 G3DSA:1.10.3810.10|G3DSA:2.40.50.140|PF00905|PF00912|PF17092|SSF53955|SSF56601|TIGR02074 AFA_17910 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR032831 Prokaryotic lipoprotein-attachment site PF13627 AFA_17915 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000183|IPR002986|IPR009006|IPR022643|IPR022644|IPR022657|IPR029066 Alanine racemase/group IV decarboxylase, C-terminal|Diaminopimelate decarboxylase, LysA|Orn/DAP/Arg decarboxylase 2, C-terminal|Orn/DAP/Arg decarboxylase 2, N-terminal|Orn/DAP/Arg decarboxylase 2, conserved site|Ornithine/DAP/Arg decarboxylase|PLP-binding barrel GO:0003824|GO:0008836|GO:0009089 G3DSA:2.40.37.10|G3DSA:3.20.20.10|MF_02120|PF00278|PF02784|PR01179|PR01181|PS00879|SSF50621|SSF51419|TIGR01048 AFA_17920 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000160|IPR001633|IPR029787|IPR035919 EAL domain|EAL domain superfamily|GGDEF domain|Nucleotide cyclase G3DSA:3.20.20.450|G3DSA:3.30.70.270|PF00563|PF00990|SM00052|SM00267|SSF141868|SSF55073|TIGR00254 AFA_17925 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002541|IPR017562 Cytochrome c assembly protein|Cytochrome c-type biogenesis protein CcsA GO:0017004|GO:0020037 PF01578|TIGR03144 AFA_17930 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007816 ResB-like domain PF05140 AFA_17935 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009056|IPR024167|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily|Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 G3DSA:1.10.760.10|PF00034|PIRSF000005|SSF46626 AFA_17940 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006073|IPR019987|IPR027417 GTP binding domain|GTP-binding protein, ribosome biogenesis, YsxC|P-loop containing nucleoside triphosphate hydrolase GO:0005525 G3DSA:3.40.50.300|MF_00321|PF01926|SSF52540|TIGR03598 AFA_17945 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001731|IPR013785|IPR030656 Aldolase-type TIM barrel|Delta-aminolevulinic acid dehydratase|Delta-aminolevulinic acid dehydratase, active site GO:0003824|GO:0004655|GO:0033014|GO:0046872 G3DSA:3.20.20.70|PF00490|PIRSF001415|PR00144|PS00169|SM01004|SSF51569 AFA_17950 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003834|IPR022910|IPR028250|IPR036249|IPR036929 Cytochrome C biogenesis protein, transmembrane domain|Thiol:disulfide interchange protein DsbD, N-terminal domain|Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily|Thiol:disulphide interchange protein DsbD|Thioredoxin-like superfamily GO:0016020|GO:0017004|GO:0047134|GO:0055114 G3DSA:2.60.40.1250|G3DSA:3.40.30.10|MF_00399|PF02683|PF11412|PF13899|SSF52833|SSF74863 AFA_17955 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004323|IPR011322|IPR015867 Divalent ion tolerance protein, CutA|Nitrogen regulatory PII-like, alpha/beta|Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal GO:0010038 G3DSA:3.30.70.120|PF03091|SSF54913 AFA_17960 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009057|IPR018060|IPR035418 DNA binding HTH domain, AraC-type|Homeobox-like domain superfamily|Transcription regulator HTH, AraC- type, ligand binding domain-like GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12833|PF14525|SM00342|SSF46689 AFA_17965 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002563|IPR012349 FMN-binding split barrel|Flavin reductase like domain GO:0010181|GO:0048037 G3DSA:2.30.110.10|PF01613|SM00903|SSF50475 AFA_17970 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011251|IPR036661 Luciferase-like domain|Luciferase-like domain superfamily GO:0016705|GO:0055114 G3DSA:3.20.20.30|PF00296|SSF51679 AFA_17975 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000456|IPR036373 Ribosomal protein L17|Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.90.1030.10|MF_01368|PF01196|PS01167|SSF64263|TIGR00059 AFA_17980 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011260|IPR011262|IPR011263|IPR011773|IPR036603|IPR036643 DNA-directed RNA polymerase, RpoA/D/Rpb3-type|DNA-directed RNA polymerase, alpha subunit|DNA-directed RNA polymerase, insert domain|DNA-directed RNA polymerase, insert domain superfamily|RNA polymerase, RBP11-like subunit|RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351|GO:0046983 G3DSA:1.10.150.20|G3DSA:2.170.120.12|G3DSA:3.30.1360.10|MF_00059|PD001179|PF01000|PF01193|PF03118|SM00662|SSF47789|SSF55257|SSF56553|TIGR02027 AFA_17985 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001912|IPR002942|IPR005709|IPR018079|IPR036986 RNA-binding S4 domain|RNA-binding S4 domain superfamily|Ribosomal protein S4, bacterial-type|Ribosomal protein S4, conserved site|Ribosomal protein S4/S9, N-terminal GO:0003723|GO:0003735|GO:0005622|GO:0006412|GO:0015935|GO:0019843 G3DSA:1.10.1050.10|G3DSA:3.10.290.10|MF_01306_B|PF00163|PF01479|PS00632|SM00363|SM01390|SSF55174|TIGR01017 AFA_17990 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001971|IPR018102|IPR019981|IPR036967 Ribosomal S11, conserved site|Ribosomal protein S11|Ribosomal protein S11 superfamily|Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.420.80|MF_01310|PF00411|PIRSF002131|PS00054|SSF53137|TIGR03632 AFA_17995 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001892|IPR010979|IPR018269|IPR019980|IPR027437 30s ribosomal protein S13, C-terminal|Ribosomal protein S13|Ribosomal protein S13, bacterial-type|Ribosomal protein S13, conserved site|Ribosomal protein S13-like, H2TH GO:0003676|GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.10.8.50|G3DSA:4.10.910.10|MF_01315|PF00416|PIRSF002134|PS00646|SSF46946|TIGR03631 AFA_18000 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000473|IPR035977 Ribosomal protein L36|Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 MF_00251|PD002101|PF00444|PS00828|SSF57840|TIGR01022 AFA_18005 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004368|IPR006196|IPR012340 Nucleic acid-binding, OB-fold|RNA-binding domain, S1, IF1 type|Translation initiation factor IF-1 GO:0003723|GO:0003743|GO:0006413 G3DSA:2.40.50.140|MF_00075|PF01176|SSF50249|TIGR00008 AFA_18010 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002208|IPR023201|IPR026593|IPR030659 Protein translocase subunit SecY|SecY conserved site|SecY domain superfamily|SecY/SEC61-alpha family GO:0015031|GO:0016020 G3DSA:1.10.3370.10|MF_01465|PF00344|PIRSF004557|PR00303|PS00755|PS00756|SSF103491|TIGR00967 AFA_18015 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005749|IPR021131|IPR030878|IPR036227 Ribosomal L18e/L15P superfamily|Ribosomal protein L15|Ribosomal protein L15, bacterial-type|Ribosomal protein L18e/L15P GO:0003735|GO:0006412|GO:0015934 G3DSA:3.100.10.10|MF_01341|PF00828|SSF52080|TIGR01071 AFA_18020 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005996|IPR016082|IPR018038|IPR036919 Ribosomal protein L30, bacterial-type|Ribosomal protein L30, conserved site|Ribosomal protein L30, ferredoxin-like fold domain|Ribosomal protein L30, ferredoxin-like fold domain superfamily GO:0003735|GO:0006412|GO:0015934 G3DSA:3.30.1390.20|MF_01371_B|PF00327|PIRSF002211|PS00634|SSF55129|TIGR01308 AFA_18025 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005324|IPR005712|IPR013810|IPR014721|IPR020568 Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Ribosomal protein S5, C-terminal|Ribosomal protein S5, N-terminal|Ribosomal protein S5, bacterial-type GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015935 G3DSA:3.30.160.20|G3DSA:3.30.230.10|MF_01307_B|PF00333|PF03719|SSF54211|SSF54768|TIGR01021 AFA_18030 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004389|IPR005484 Ribosomal protein L18|Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.420.100|MF_01337_B|PF00861|SSF53137|TIGR00060 AFA_18035 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000702|IPR002358|IPR019906|IPR020040|IPR036789 Ribosomal protein L6|Ribosomal protein L6, alpha-beta domain|Ribosomal protein L6, alpha-beta domain superfamily|Ribosomal protein L6, bacterial-type|Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 G3DSA:3.90.930.12|MF_01365_B|PF00347|PIRSF002162|PR00059|PS00525|SSF56053|TIGR03654 AFA_18040 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000630|IPR035987 Ribosomal protein S8|Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 G3DSA:3.30.1370.30|G3DSA:3.30.1490.10|MF_01302_B|PF00410|PS00053|SSF56047 AFA_18045 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001209|IPR023036 Ribosomal protein S14|Ribosomal protein S14, bacterial/plastid GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:4.10.830.10|MF_00537|PF00253|SSF57716 AFA_18050 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002132|IPR020929|IPR020930|IPR022803|IPR031309|IPR031310 Ribosomal protein L5|Ribosomal protein L5 domain superfamily|Ribosomal protein L5, C-terminal|Ribosomal protein L5, N-terminal|Ribosomal protein L5, bacterial-type|Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.1440.10|MF_01333_B|PF00281|PF00673|PIRSF002161|PS00358|SSF55282 AFA_18055 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003256|IPR005825|IPR008991|IPR014722 Ribosomal protein L2, domain 2|Ribosomal protein L24|Ribosomal protein L24/L26, conserved site|Translation protein SH3-like domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.30.30.30|MF_01326_B|PF17136|PS01108|SSF50104|TIGR01079 AFA_18060 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000218|IPR005745|IPR019972|IPR036853 Ribosomal protein L14 superfamily|Ribosomal protein L14P|Ribosomal protein L14P, conserved site|Ribosomal protein L14P, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0015934 G3DSA:2.40.150.20|MF_01367|PF00238|PS00049|SM01374|SSF50193|TIGR01067 AFA_18065 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000160|IPR001633|IPR029787|IPR032244|IPR035919 EAL domain|EAL domain superfamily|GGDEF domain|LapD/MoxY, periplasmic domain|Nucleotide cyclase G3DSA:3.20.20.450|G3DSA:3.30.1040.50|G3DSA:3.30.70.270|PF00563|PF00990|PF16448|SM00052|SM00267|SSF141868|SSF55073 AFA_18070 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR010319 Transglutaminase-like cysteine peptidase, predicted G3DSA:3.10.620.30|PF06035 AFA_18075 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002035|IPR003644|IPR008215|IPR011049|IPR018511|IPR019960|IPR036465|IPR038081 CalX-like domain superfamily|Hemolysin-type calcium-binding conserved site|Na-Ca exchanger/integrin-beta4|Serralysin-like metalloprotease, C-terminal|Tachykinin domain|Type I secretion C-terminal target domain, VC_A0849 subclass|von Willebrand factor A-like domain superfamily|von Willebrand factor, type A GO:0007154|GO:0007217|GO:0016021 G3DSA:3.40.50.410|PF03160|PF13519|PR00313|PS00330|SM00203|SM00327|SSF141072|SSF51120|SSF53300|TIGR03661 AFA_18080 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000792|IPR016032 Signal transduction response regulator, C-terminal effector|Transcription regulator LuxR, C-terminal GO:0003677|GO:0006355 G3DSA:3.40.50.12740|PF00196|PR00038|PS00622|SM00421|SSF46894 AFA_18085 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003997|IPR006144|IPR010129|IPR039562 Membrane fusion protein, biotin-lipoyl like domain|RTX secretion protein D, Gram-negative bacteria|Secretion protein HlyD, conserved site|Type I secretion membrane fusion protein, HlyD family GO:0008565|GO:0009306|GO:0015031|GO:0016020|GO:0016021 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.50.100|PF13437|PF13533|PR01490|PS00543|SSF111369|TIGR01843 AFA_18090 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR011527|IPR017750|IPR017871|IPR027417|IPR036640 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter type 1, transmembrane domain superfamily|ABC transporter, conserved site|ABC transporter-like|ATPase, type I secretion system|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016021|GO:0016887|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|G3DSA:3.90.70.10|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123|TIGR03375 AFA_18100 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003423|IPR010130 Outer membrane efflux protein|Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 G3DSA:1.20.1600.10|PF02321|SSF56954|TIGR01844 AFA_18105 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005594|IPR008635|IPR011049 Coiled stalk of trimeric autotransporter adhesin|Serralysin-like metalloprotease, C-terminal|YadA-like, C-terminal GO:0009405|GO:0019867 G3DSA:2.150.10.10|G3DSA:3.30.1300.30|PF03895|PF05662|SSF101967|SSF54523 AFA_18110 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007312|IPR008475|IPR017767|IPR017849 Alkaline phosphatase-like, alpha/beta/alpha|Bacterial phospholipase C, C-terminal domain|Bacterial phospholipase C, phosphocholine-specific|Phosphoesterase GO:0003824|GO:0004629|GO:0016042|GO:0016788|GO:0034480 G3DSA:3.40.720.10|PF04185|PF05506|TIGR03396 AFA_18120 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR005769|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|ABC transporter, permease PhnE/PtxC|MetI-like superfamily GO:0005887|GO:0015604|GO:0015716|GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01097 AFA_18125 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_18130 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 G3DSA:3.40.190.10|PF12974|SSF53850|TIGR01098 AFA_18135 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006357|IPR023214|IPR036412 HAD superfamily|HAD-like superfamily|HAD-superfamily hydrolase, subfamily IIA G3DSA:3.40.50.1000|PF13242|PF13344|SSF56784 AFA_18140 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000281|IPR001347|IPR009057|IPR036388 Helix-turn-helix protein RpiR|Homeobox-like domain superfamily|Sugar isomerase (SIS)|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0097367|GO:1901135 G3DSA:1.10.10.10|G3DSA:3.40.50.10490|PF01380|PF01418|SSF46689|SSF53697 AFA_18145 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR015590|IPR016161|IPR016162|IPR016163 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|SSF53720 AFA_18150 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001647|IPR009057|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.357.10|PF00440|PR00455|SSF46689|SSF48498 AFA_18155 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009075|IPR009100|IPR013786|IPR015396|IPR036250|IPR037069 Acyl-CoA dehydrogenase, C-termina, bacterial type|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0003995|GO:0016627|GO:0033539|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02771|PF09317|SSF47203|SSF56645 AFA_18160 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002155|IPR016039|IPR020610|IPR020613|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00099|PS00737|SSF53901|TIGR01930 AFA_18165 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001753|IPR006108|IPR006176|IPR008927|IPR029045|IPR036291 3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase|NAD(P)-binding domain superfamily GO:0003824|GO:0003857|GO:0006631|GO:0016491|GO:0055114 G3DSA:1.10.1040.50|G3DSA:3.40.50.720|G3DSA:3.90.226.10|PF00378|PF00725|PF02737|SSF48179|SSF51735|SSF52096 AFA_18170 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) G3DSA:2.40.160.60|PF03349|SSF56935 AFA_18175 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR027961|IPR029069 HotDog domain superfamily|Protein of unknown function DUF4442 G3DSA:3.10.129.10|PF14539|SSF54637 AFA_18180 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR016087|IPR016088|IPR036298 Chalcone isomerase|Chalcone isomerase superfamily|Chalcone isomerase, 3-layer sandwich GO:0016872 G3DSA:3.50.70.10|PF16036|SSF54626 AFA_18185 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 AFA_18190 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001094|IPR001433|IPR001709|IPR003097|IPR008254|IPR010199|IPR017938|IPR023173|IPR029039|IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Flavodoxin-like|Flavodoxin/nitric oxide synthase|Flavoprotein pyridine nucleotide cytochrome reductase|Flavoprotein-like superfamily|NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily|Oxidoreductase FAD/NAD(P)-binding|Riboflavin synthase-like beta-barrel|Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding|Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0016491|GO:0019344|GO:0050660|GO:0055114 G3DSA:1.20.990.10|G3DSA:2.40.30.10|G3DSA:3.40.50.360|G3DSA:3.40.50.80|PF00175|PF00258|PF00667|PIRSF000207|PR00369|PR00371|SSF52218|SSF52343|SSF63380|TIGR01931 AFA_18195 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005117|IPR006066|IPR006067|IPR011786|IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain|Nitrite/Sulfite reductase ferredoxin-like domain superfamily|Nitrite/sulphite reductase 4Fe-4S domain|Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site|Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0016491|GO:0020037|GO:0050661|GO:0051536|GO:0051539|GO:0055114 G3DSA:3.30.413.10|G3DSA:3.90.480.10|MF_01540|PF01077|PF03460|PR00397|PS00365|SSF55124|SSF56014|TIGR02041 AFA_18200 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000878|IPR003043|IPR006366|IPR006367|IPR012409|IPR014776|IPR014777|IPR019478|IPR028281|IPR035996|IPR036291 NAD(P)-binding domain superfamily|Sirohaem synthase|Sirohaem synthase, N-terminal|Sirohaem synthase, dimerisation domain|Siroheme synthase, central domain|Tetrapyrrole methylase|Tetrapyrrole methylase superfamily|Tetrapyrrole methylase, subdomain 1|Tetrapyrrole methylase, subdomain 2|Uroporphiryn-III C-methyltransferase, conserved site|Uroporphyrin-III C-methyltransferase GO:0004851|GO:0006779|GO:0008168|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 G3DSA:3.30.160.110|G3DSA:3.30.950.10|G3DSA:3.40.1010.10|G3DSA:3.40.50.720|MF_01646|PF00590|PF10414|PF13241|PF14824|PIRSF036426|PS00839|PS00840|SSF51735|SSF53790|SSF75615|TIGR01469|TIGR01470 AFA_18205 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 AFA_18210 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic G3DSA:3.40.190.10|PF13379|SSF53850 AFA_18215 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_18220 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 G3DSA:2.40.110.10|SSF56645 AFA_18225 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003779|IPR004675|IPR029032 AhpD-like|Alkylhydroperoxidase AhpD core|Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 G3DSA:1.20.1290.10|PF02627|SSF69118|TIGR00778 AFA_18230 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR009057|IPR011051|IPR014710|IPR018060|IPR018062|IPR020449|IPR032783 AraC-type transcription regulator, ligand-binding domain|DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox-like domain superfamily|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold|Transcription regulator HTH, AraC- type GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:2.60.120.10|PF12833|PF12852|PR00032|PS00041|SM00342|SSF46689|SSF51182 AFA_18235 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000266|IPR012340|IPR019979|IPR019984 30S ribosomal protein S17|Nucleic acid-binding, OB-fold|Ribosomal protein S17, conserved site|Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.40.50.140|MF_01345_B|PD001295|PF00366|PR00973|PS00056|SSF50249|TIGR03635 AFA_18240 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001854|IPR018254|IPR036049 Ribosomal protein L29, conserved site|Ribosomal protein L29/L35|Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.10.287.310|MF_00374|PF00831|PS00579|SSF46561|TIGR00012 AFA_18245 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000114|IPR016180|IPR020798|IPR036920 Ribosomal protein L10e/L16|Ribosomal protein L10e/L16 superfamily|Ribosomal protein L16|Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 G3DSA:3.90.1170.10|MF_01342|PF00252|PR00060|PS00586|PS00701|SSF54686|TIGR01164 AFA_18250 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001351|IPR004044|IPR004087|IPR005704|IPR009019|IPR015946|IPR018280|IPR036419 K Homology domain|K Homology domain, type 2|K homology domain superfamily, prokaryotic type|K homology domain-like, alpha/beta|Ribosomal protein S3, C-terminal|Ribosomal protein S3, C-terminal domain superfamily|Ribosomal protein S3, bacterial|Ribosomal protein S3, conserved site GO:0003676|GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015935 G3DSA:3.30.1140.32|G3DSA:3.30.300.20|MF_01309_B|PF00189|PF07650|PS00548|SM00322|SSF54814|SSF54821|TIGR01009 AFA_18255 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001063|IPR005727|IPR018260|IPR036394 Ribosomal protein L22, bacterial/chloroplast-type|Ribosomal protein L22/L17|Ribosomal protein L22/L17 superfamily|Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015934 G3DSA:3.90.470.10|MF_01331_B|PF00237|PS00464|SSF54843|TIGR01044 AFA_18260 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002222|IPR005732|IPR020934|IPR023575 Ribosomal protein S19 conserved site|Ribosomal protein S19, bacterial-type|Ribosomal protein S19, superfamily|Ribosomal protein S19/S15 GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015935 G3DSA:3.30.860.10|MF_00531|PF00203|PIRSF002144|PR00975|PS00323|SSF54570|TIGR01050 AFA_18265 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002171|IPR005880|IPR008991|IPR012340|IPR014722|IPR014726|IPR022666|IPR022669|IPR022671 Nucleic acid-binding, OB-fold|Ribosomal Proteins L2, RNA binding domain|Ribosomal protein L2|Ribosomal protein L2, C-terminal|Ribosomal protein L2, bacterial/organellar-type|Ribosomal protein L2, conserved site|Ribosomal protein L2, domain 2|Ribosomal protein L2, domain 3|Translation protein SH3-like domain superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015934|GO:0016740 G3DSA:2.30.30.30|G3DSA:2.40.50.140|G3DSA:4.10.950.10|MF_01320_B|PF00181|PF03947|PIRSF002158|PS00467|SM01382|SM01383|SSF50104|SSF50249|TIGR01171 AFA_18270 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR012677|IPR012678|IPR013025 Nucleotide-binding alpha-beta plait domain superfamily|Ribosomal protein L23/L15e core domain superfamily|Ribosomal protein L25/L23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.70.330|MF_01369_B|PF00276|SSF54189 AFA_18275 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002136|IPR013005|IPR023574 50S ribosomal protein uL4|Ribosomal protein L4 domain superfamily|Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 G3DSA:3.40.1370.10|MF_01328_B|PF00573|SSF52166|TIGR03953 AFA_18280 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000597|IPR009000|IPR019926|IPR019927 Ribosomal protein L3|Ribosomal protein L3, bacterial/organelle-type|Ribosomal protein L3, conserved site|Translation protein, beta-barrel domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.40.30.10|G3DSA:2.40.50.620|MF_01325_B|PF00297|PS00474|SSF50447|TIGR03625 AFA_18285 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_18290 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000515|IPR007210|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|ABC-type glycine betaine transport system, substrate-binding domain|MetI-like superfamily GO:0016020|GO:0022857|GO:0043190|GO:0055085 G3DSA:1.10.3720.10|G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.40.190.100|PF00528|PF04069|SSF161098|SSF53850 AFA_18295 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001848|IPR018268|IPR027486|IPR036838 Ribosomal protein S10|Ribosomal protein S10 domain|Ribosomal protein S10 domain superfamily|Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.70.600|MF_00508|PF00338|PR00971|PS00361|SM01403|SSF54999|TIGR01049 AFA_18300 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000795|IPR004160|IPR004161|IPR004541|IPR005225|IPR009000|IPR009001|IPR027417|IPR031157 P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal|Translation elongation factor EFTu-like, domain 2|Translation elongation factor EFTu/EF1A, C-terminal|Translation elongation factor EFTu/EF1A, bacterial/organelle|Translation protein, beta-barrel domain superfamily GO:0003746|GO:0003924|GO:0005525|GO:0005622|GO:0006414 G3DSA:2.40.30.10|G3DSA:3.40.50.300|MF_00118_B|PF00009|PF03143|PF03144|PR00315|PS00301|SSF50447|SSF50465|SSF52540|TIGR00231|TIGR00485 AFA_18305 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000640|IPR000795|IPR004161|IPR004540|IPR005225|IPR005517|IPR009000|IPR014721|IPR020568|IPR027417|IPR031157|IPR035647 EF-G domain III/V-like|Elongation factor EFG, domain V-like|P-loop containing nucleoside triphosphate hydrolase|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFG/EF2|Translation elongation factor EFG/EF2, domain IV|Translation elongation factor EFTu-like, domain 2|Translation protein, beta-barrel domain superfamily GO:0003746|GO:0003924|GO:0005525|GO:0005622|GO:0006414 G3DSA:2.40.30.10|G3DSA:3.30.230.10|G3DSA:3.30.70.240|G3DSA:3.30.70.870|G3DSA:3.40.50.300|MF_00054_B|PF00009|PF00679|PF03144|PF03764|PF14492|PR00315|PS00301|SM00838|SM00889|SSF50447|SSF52540|SSF54211|SSF54980|TIGR00231|TIGR00484 AFA_18310 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000235|IPR005717|IPR020606|IPR023798|IPR036823 Ribosomal protein S5/S7|Ribosomal protein S7 domain|Ribosomal protein S7 domain superfamily|Ribosomal protein S7, bacterial/organellar-type|Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412|GO:0015935 G3DSA:1.10.455.10|MF_00480_B|PF00177|PIRSF002122|PS00052|SSF47973|TIGR01029 AFA_18315 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005679|IPR006032|IPR012340 Nucleic acid-binding, OB-fold|Ribosomal protein S12, bacterial-type|Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015935 G3DSA:2.40.50.140|MF_00403_B|PF00164|PIRSF002133|PR01034|PS00055|SSF50249|TIGR00981 AFA_18320 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 AFA_18325 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006860|IPR013783|IPR018392|IPR036779 FecR protein|Immunoglobulin-like fold|LysM domain|LysM domain superfamily G3DSA:2.60.40.10|G3DSA:3.10.350.10|PF01476|PF04773|SSF54106 AFA_18330 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003594|IPR004358|IPR007890|IPR036097|IPR036890 CHASE2|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF02518|PF05226|PR00344|SM00387|SM01080|SSF47384|SSF55874 AFA_18335 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003313|IPR009057|IPR018060|IPR018062|IPR020449|IPR037923 AraC-type arabinose-binding/dimerisation domain|DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox-like domain superfamily|Transcription regulator HTH, AraC- type|Transcription regulator HTH-like GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.2730|G3DSA:1.10.10.60|PF02311|PF12833|PR00032|PS00041|SM00342|SSF46689|SSF51215 AFA_18340 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 PF01810 AFA_18345 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000923|IPR008972|IPR014068|IPR028871 Azurin|Blue (type 1) copper domain|Blue (type 1) copper protein, binding site|Cupredoxin GO:0005507|GO:0009055 G3DSA:2.60.40.420|PD003655|PF00127|PS00196|SSF49503|TIGR02695 AFA_18350 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000722|IPR006592|IPR007066|IPR007080|IPR007081|IPR007083|IPR012754|IPR038120 DNA-directed RNA polymerase, subunit beta-prime|RNA polymerase Rpb1, domain 1|RNA polymerase Rpb1, domain 3|RNA polymerase Rpb1, domain 4|RNA polymerase Rpb1, domain 5|RNA polymerase Rpb1, funnel domain superfamily|RNA polymerase, N-terminal|RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 G3DSA:1.10.132.30|G3DSA:1.10.150.390|G3DSA:1.10.1790.20|G3DSA:1.10.274.100|G3DSA:1.10.40.90|G3DSA:2.40.50.100|MF_01322|PF00623|PF04983|PF04997|PF04998|PF05000|SM00663|SSF64484|TIGR02386 AFA_18355 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR007120|IPR007121|IPR007641|IPR007642|IPR007644|IPR007645|IPR010243|IPR014724|IPR019462|IPR037033|IPR037034 DNA-directed RNA polymerase beta subunit, bacterial-type|DNA-directed RNA polymerase, beta subunit, external 1 domain|DNA-directed RNA polymerase, subunit 2, hybrid-binding domain|DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily|RNA polymerase Rpb2, OB-fold|RNA polymerase Rpb2, domain 2|RNA polymerase Rpb2, domain 2 superfamily|RNA polymerase Rpb2, domain 3|RNA polymerase Rpb2, domain 7|RNA polymerase, beta subunit, conserved site|RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 G3DSA:2.40.270.10|G3DSA:2.40.50.100|G3DSA:2.40.50.150|G3DSA:3.90.1100.10|G3DSA:3.90.1110.10|G3DSA:3.90.1800.10|MF_01321|PF00562|PF04560|PF04561|PF04563|PF04565|PF10385|PS01166|SSF64484|TIGR02013 AFA_18360 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000206|IPR008932|IPR013823|IPR014719|IPR036235 Ribosomal protein L7/L12|Ribosomal protein L7/L12, C-terminal|Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like|Ribosomal protein L7/L12, oligomerisation|Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.20.5.710|G3DSA:3.30.1390.10|MF_00368|PD001326|PF00542|PF16320|SSF48300|SSF54736|TIGR00855 AFA_18365 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001790|IPR002363|IPR022973 Ribosomal protein L10|Ribosomal protein L10, eubacterial, conserved site|Ribosomal protein L10P GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0042254 G3DSA:3.30.70.1730|MF_00362|PD968187|PF00466|PS01109|SSF160369 AFA_18370 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002143|IPR005878|IPR016095|IPR023673|IPR023674|IPR028364 Ribosomal protein L1|Ribosomal protein L1, 3-layer alpha/beta-sandwich|Ribosomal protein L1, bacterial-type|Ribosomal protein L1, conserved site|Ribosomal protein L1-like|Ribosomal protein L1/ribosomal biogenesis protein GO:0003723|GO:0003735|GO:0006412|GO:0015934 G3DSA:3.30.190.20|G3DSA:3.40.50.790|MF_01318_B|PF00687|PIRSF002155|PS01199|SSF56808|TIGR01169 AFA_18375 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000911|IPR006519|IPR020783|IPR020784|IPR020785|IPR036769|IPR036796 Ribosomal protein L11, C-terminal|Ribosomal protein L11, C-terminal domain superfamily|Ribosomal protein L11, N-terminal|Ribosomal protein L11, bacterial-type|Ribosomal protein L11, conserved site|Ribosomal protein L11/L12|Ribosomal protein L11/L12, N-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 G3DSA:1.10.10.2720|G3DSA:3.30.1550.10|MF_00736|PD001367|PF00298|PF03946|PS00359|SM00649|SSF46906|SSF54747|TIGR01632 AFA_18380 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001062|IPR005824|IPR006645|IPR008991|IPR014722|IPR015869|IPR036735 KOW|NusG, N-terminal|NusG, N-terminal domain superfamily|Ribosomal protein L2, domain 2|Transcription antitermination protein, NusG|Transcription antitermination protein, NusG, bacteria, conserved site|Translation protein SH3-like domain superfamily GO:0006355|GO:0032784 G3DSA:2.30.30.30|G3DSA:3.30.70.940|MF_00948|PF00467|PF02357|PR00338|PS01014|SM00738|SM00739|SSF50104|SSF82679|TIGR00922 AFA_18385 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001901|IPR005807|IPR038379 Protein translocase complex, SecE/Sec61-gamma subunit|SecE subunit of protein translocation complex, bacterial-like|SecE superfamily GO:0006605|GO:0006886|GO:0009306|GO:0015450|GO:0016020|GO:0016021 G3DSA:1.20.5.1030|MF_00422|PF00584|PR01650|TIGR00964 AFA_18395 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000795|IPR004160|IPR004161|IPR004541|IPR005225|IPR009000|IPR009001|IPR027417|IPR031157 P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal|Translation elongation factor EFTu-like, domain 2|Translation elongation factor EFTu/EF1A, C-terminal|Translation elongation factor EFTu/EF1A, bacterial/organelle|Translation protein, beta-barrel domain superfamily GO:0003746|GO:0003924|GO:0005525|GO:0005622|GO:0006414 G3DSA:2.40.30.10|G3DSA:3.40.50.300|MF_00118_B|PF00009|PF03143|PF03144|PR00315|PS00301|SSF50447|SSF50465|SSF52540|TIGR00231|TIGR00485 AFA_18415 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003115|IPR004437|IPR036086 ParB/RepB/Spo0J partition protein family|ParB/Sulfiredoxin|ParB/Sulfiredoxin superfamily GO:0003677 G3DSA:1.10.10.2830|G3DSA:3.90.1530.30|PF02195|SM00470|SSF109709|SSF110849|TIGR00180 AFA_18420 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025669|IPR027417 AAA domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13614|SSF52540 AFA_18425 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003682|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 G3DSA:3.40.50.150|MF_00074|PF02527|PIRSF003078|SSF53335|TIGR00138 AFA_18430 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002218|IPR004416|IPR020595|IPR026904|IPR036188 FAD/NAD(P)-binding domain superfamily|GidA associated domain 3|MnmG-related, conserved site|tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG|tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0002098|GO:0008033|GO:0050660 G3DSA:1.10.10.1800|G3DSA:1.10.150.570|G3DSA:3.50.50.60|MF_00129|PF01134|PF13932|PS01280|PS01281|SM01228|SSF51905|TIGR00136 AFA_18435 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|SSF53383 AFA_18440 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004843|IPR006186|IPR029052 Calcineurin-like phosphoesterase domain, ApaH type|Metallo-dependent phosphatase-like|Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 G3DSA:3.60.21.10|PF00149|PR00114|SSF56300 AFA_18445 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000160|IPR009050|IPR012292|IPR029787 GGDEF domain|Globin-like superfamily|Globin/Protoglobin|Nucleotide cyclase GO:0019825|GO:0020037 G3DSA:1.10.490.10|G3DSA:3.30.70.270|PF00990|PF11563|SM00267|SSF46458|SSF55073|TIGR00254 AFA_18450 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003817|IPR033177|IPR033178 Phosphatidylserine decarboxylase|Phosphatidylserine decarboxylase, prokaryotic type 1|Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 MF_00662|PF02666|TIGR00163 AFA_18455 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR025178 Domain of unknown function DUF4105 PF13387 AFA_18460 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000634|IPR001926|IPR036052 Pyridoxal-phosphate dependent enzyme|Serine/threonine dehydratase, pyridoxal-phosphate-binding site|Tryptophan synthase beta subunit-like PLP-dependent enzyme GO:0006520|GO:0030170 G3DSA:3.40.50.1100|PF00291|PS00165|SSF53686 AFA_18465 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR036390 Winged helix DNA-binding domain superfamily SSF46785 AFA_18470 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 G3DSA:3.10.310.10|PF02567|PIRSF016184|SSF54506|TIGR00654 AFA_18480 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR006860|IPR032623 FecR protein|FecR, N-terminal PF04773|PF16220 AFA_18485 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005546|IPR011050|IPR036709 Autotransporter beta-domain|Autotransporter beta-domain superfamily|Pectin lyase fold/virulence factor G3DSA:2.40.128.130|PF03797|SM00869|SSF103515|SSF51126 AFA_18500 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR011204 Virulence protein RhuM-like PF13310|PIRSF015268 AFA_18505 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004520|IPR005225|IPR006073|IPR018948|IPR025867|IPR027266|IPR027368|IPR027417 GTP binding domain|GTP-binding protein TrmE, N-terminal|GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1|MnmE, helical domain|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|tRNA modification GTPase MnmE|tRNA modification GTPase MnmE domain 2 GO:0003924|GO:0005515|GO:0005525|GO:0005622|GO:0006400 G3DSA:1.20.120.430|G3DSA:3.30.1360.120|G3DSA:3.40.50.300|MF_00379|PF01926|PF10396|PF12631|SSF52540|TIGR00231|TIGR00450 AFA_18510 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001387|IPR010982|IPR011051|IPR013096|IPR014710 Cro/C1-type helix-turn-helix domain|Cupin 2, conserved barrel|Lambda repressor-like, DNA-binding domain superfamily|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold GO:0003677|GO:0043565 G3DSA:1.10.260.40|G3DSA:2.60.120.10|PF07883|PF13560|SM00530|SSF47413|SSF51182 AFA_18515 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002933|IPR010169|IPR011650|IPR036264 Acetylornithine deacetylase ArgE|Bacterial exopeptidase dimerisation domain|Peptidase M20|Peptidase M20, dimerisation domain GO:0005737|GO:0006526|GO:0008777|GO:0016787 G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|SSF53187|SSF55031|TIGR01892 AFA_18520 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001926|IPR036052 Pyridoxal-phosphate dependent enzyme|Tryptophan synthase beta subunit-like PLP-dependent enzyme G3DSA:3.40.50.1100|PF00291|SSF53686 AFA_18525 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003462|IPR023401|IPR036291 NAD(P)-binding domain superfamily|Ornithine cyclodeaminase, N-terminal|Ornithine cyclodeaminase/mu-crystallin G3DSA:3.30.1780.10|G3DSA:3.40.50.720|PF02423|PIRSF001439|SSF51735 AFA_18530 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 AFA_18535 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000709|IPR028081|IPR028082 Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I GO:0006865 G3DSA:3.40.50.2300|PF13458|PR00337|SSF53822 AFA_18540 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_18545 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 AFA_18550 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|SM00382|SSF52540 AFA_18555 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 AFA_18560 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF12697|SSF53474 AFA_18565 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic SSF144052 AFA_18570 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000868|IPR036380 Isochorismatase-like|Isochorismatase-like superfamily GO:0003824 G3DSA:3.40.50.850|PF00857|SSF52499 AFA_18575 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002938|IPR036188 FAD-binding domain|FAD/NAD(P)-binding domain superfamily GO:0071949 G3DSA:3.50.50.60|PF01494|PR00420|SSF51905|SSF54373 AFA_18580 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR018713 Domain of unknown function DUF2236 PF09995 AFA_18585 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001647|IPR009057|IPR023772|IPR036271 DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.357.10|PF00440|PR00455|PS01081|SSF46689|SSF48498 AFA_18590 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR004360|IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain G3DSA:3.10.180.10|PF00903|SSF54593 AFA_18595 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002226|IPR010582|IPR011614|IPR018028|IPR020835|IPR024708|IPR024711|IPR037060 Catalase active site|Catalase core domain|Catalase core domain superfamily|Catalase haem-binding site|Catalase immune-responsive domain|Catalase superfamily|Catalase, mono-functional, haem-containing|Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 G3DSA:2.40.180.10|PF00199|PF06628|PIRSF038928|PR00067|PS00437|PS00438|SM01060|SSF56634 AFA_18600 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR001708|IPR019998|IPR028053|IPR028055|IPR038210|IPR038221 Membrane insertase YidC/ALB3/OXA1/COX18|Membrane insertase YidC|Membrane insertase YidC, N-terminal|Membrane insertase YidC, periplasmic domain|Membrane insertase YidC/Oxa1, C-terminal|YidC, periplasmic domain superfamily GO:0016021|GO:0032977 G3DSA:2.70.98.90|MF_01810|PF02096|PF14849|PR00701|PR01900|TIGR03592|TIGR03593 AFA_18605 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR002696 Putative membrane protein insertion efficiency factor MF_00386|PD004225|PF01809|SM01234|TIGR00278 AFA_18610 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000100|IPR014721|IPR020539|IPR020568 Ribonuclease P|Ribonuclease P, conserved site|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0000049|GO:0004526|GO:0008033 G3DSA:3.30.230.10|MF_00227|PD003629|PF00825|PS00648|SSF54211 AFA_18615 /data/g2d_mirror_genbank/Alcaligenes_faecalis_JQ135/ASM224217v1_genomic IPR000271|IPR020939 Ribosomal protein L34|Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 MF_00391|PD003101|PF00468|PS00784|TIGR01030