locus-tag class description ALFP_0001 PF08299 Bacterial dnaA protein helix-turn-helix ALFP_0001 PF11638 DnaA N-terminal domain ALFP_0001 PF00308 Bacterial dnaA protein ALFP_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain ALFP_0002 PF02767 DNA polymerase III beta subunit, central domain ALFP_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain ALFP_0003 PF00204 DNA gyrase B ALFP_0003 PF00986 DNA gyrase B subunit, carboxyl terminus ALFP_0003 PF18053 DNA gyrase B subunit insert domain ALFP_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_0003 PF01751 Toprim domain ALFP_0004 PF01479 S4 domain ALFP_0004 PF00849 RNA pseudouridylate synthase ALFP_0007 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_0008 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0012 PF13609 Gram-negative porin ALFP_0013 PF00701 Dihydrodipicolinate synthetase family ALFP_0016 PF01266 FAD dependent oxidoreductase ALFP_0018 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_0018 PF04324 BFD-like [2Fe-2S] binding domain ALFP_0019 PF00378 Enoyl-CoA hydratase/isomerase ALFP_0020 PF03060 Nitronate monooxygenase ALFP_0021 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0024 PF02515 CoA-transferase family III ALFP_0026 PF02515 CoA-transferase family III ALFP_0027 PF00392 Bacterial regulatory proteins, gntR family ALFP_0027 PF07729 FCD domain ALFP_0028 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_0030 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_0030 PF00175 Oxidoreductase NAD-binding domain ALFP_0032 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ALFP_0032 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ALFP_0033 PF03466 LysR substrate binding domain ALFP_0033 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0036 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0038 PF02653 Branched-chain amino acid transport system / permease component ALFP_0039 PF02653 Branched-chain amino acid transport system / permease component ALFP_0039 PF11862 Domain of unknown function (DUF3382) ALFP_0040 PF00005 ABC transporter ALFP_0041 PF00501 AMP-binding enzyme ALFP_0041 PF13193 AMP-binding enzyme C-terminal domain ALFP_0043 PF00561 alpha/beta hydrolase fold ALFP_0043 PF00364 Biotin-requiring enzyme ALFP_0044 PF00155 Aminotransferase class I and II ALFP_0044 PF00392 Bacterial regulatory proteins, gntR family ALFP_0045 PF00378 Enoyl-CoA hydratase/isomerase ALFP_0046 PF17645 Arylmalonate decarboxylase ALFP_0047 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0050 PF00892 EamA-like transporter family ALFP_0051 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0051 PF03466 LysR substrate binding domain ALFP_0053 PF08402 TOBE domain ALFP_0053 PF00005 ABC transporter ALFP_0057 PF07683 Cobalamin synthesis protein cobW C-terminal domain ALFP_0057 PF02492 CobW/HypB/UreG, nucleotide-binding domain ALFP_0058 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0063 PF00884 Sulfatase ALFP_0063 PF16347 Domain of unknown function (DUF4976) ALFP_0065 PF01047 MarR family ALFP_0068 PF12802 MarR family ALFP_0070 PF01494 FAD binding domain ALFP_0071 PF07883 Cupin domain ALFP_0072 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALFP_0073 PF00795 Carbon-nitrogen hydrolase ALFP_0074 PF04199 Putative cyclase ALFP_0075 PF00175 Oxidoreductase NAD-binding domain ALFP_0075 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_0075 PF00970 Oxidoreductase FAD-binding domain ALFP_0076 PF00355 Rieske [2Fe-2S] domain ALFP_0076 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_0077 PF00866 Ring hydroxylating beta subunit ALFP_0078 PF00501 AMP-binding enzyme ALFP_0078 PF13193 AMP-binding enzyme C-terminal domain ALFP_0083 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_0090 PF01613 Flavin reductase like domain ALFP_0092 PF12833 Helix-turn-helix domain ALFP_0094 PF00005 ABC transporter ALFP_0096 PF02261 Aspartate decarboxylase ALFP_0097 PF00593 TonB dependent receptor ALFP_0097 PF07715 TonB-dependent Receptor Plug Domain ALFP_0099 PF04542 Sigma-70 region 2 ALFP_0099 PF08281 Sigma-70, region 4 ALFP_0100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALFP_0100 PF00005 ABC transporter ALFP_0101 PF00005 ABC transporter ALFP_0101 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALFP_0102 PF12911 N-terminal TM domain of oligopeptide transport permease C ALFP_0102 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0104 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALFP_0105 PF11799 impB/mucB/samB family C-terminal domain ALFP_0105 PF00817 impB/mucB/samB family ALFP_0107 PF00202 Aminotransferase class-III ALFP_0109 PF00296 Luciferase-like monooxygenase ALFP_0110 PF03358 NADPH-dependent FMN reductase ALFP_0114 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0114 PF03466 LysR substrate binding domain ALFP_0116 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ALFP_0116 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ALFP_0117 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0119 PF01274 Malate synthase ALFP_0121 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ALFP_0121 PF01048 Phosphorylase superfamily ALFP_0123 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0124 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_0127 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALFP_0127 PF00205 Thiamine pyrophosphate enzyme, central domain ALFP_0127 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALFP_0128 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0130 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_0132 PF01131 DNA topoisomerase ALFP_0132 PF01751 Toprim domain ALFP_0134 PF04361 Protein of unknown function (DUF494) ALFP_0135 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALFP_0136 PF00289 Biotin carboxylase, N-terminal domain ALFP_0136 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALFP_0136 PF02785 Biotin carboxylase C-terminal domain ALFP_0136 PF00364 Biotin-requiring enzyme ALFP_0137 PF01039 Carboxyl transferase domain ALFP_0138 PF00108 Thiolase, N-terminal domain ALFP_0138 PF02803 Thiolase, C-terminal domain ALFP_0139 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ALFP_0140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_0140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_0140 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_0141 PF09278 MerR, DNA binding ALFP_0141 PF00376 MerR family regulatory protein ALFP_0143 PF01053 Cys/Met metabolism PLP-dependent enzyme ALFP_0144 PF00085 Thioredoxin ALFP_0144 PF01323 DSBA-like thioredoxin domain ALFP_0146 PF05746 DALR anticodon binding domain ALFP_0146 PF00750 tRNA synthetases class I (R) ALFP_0146 PF03485 Arginyl tRNA synthetase N terminal domain ALFP_0151 PF00682 HMGL-like ALFP_0151 PF08502 LeuA allosteric (dimerisation) domain ALFP_0153 PF04552 Sigma-54, DNA binding domain ALFP_0153 PF00309 Sigma-54 factor, Activator interacting domain (AID) ALFP_0153 PF04963 Sigma-54 factor, core binding domain ALFP_0154 PF07715 TonB-dependent Receptor Plug Domain ALFP_0154 PF00593 TonB dependent receptor ALFP_0155 PF00694 Aconitase C-terminal domain ALFP_0156 PF00330 Aconitase family (aconitate hydratase) ALFP_0157 PF00682 HMGL-like ALFP_0158 PF02515 CoA-transferase family III ALFP_0159 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_0161 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0162 PF00857 Isochorismatase family ALFP_0163 PF03466 LysR substrate binding domain ALFP_0163 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0165 PF00210 Ferritin-like domain ALFP_0167 PF03144 Elongation factor Tu domain 2 ALFP_0167 PF16658 Class II release factor RF3, C-terminal domain ALFP_0167 PF00009 Elongation factor Tu GTP binding domain ALFP_0168 PF01810 LysE type translocator ALFP_0169 PF00271 Helicase conserved C-terminal domain ALFP_0169 PF00270 DEAD/DEAH box helicase ALFP_0171 PF04536 TPM domain ALFP_0174 PF01926 50S ribosome-binding GTPase ALFP_0174 PF12631 MnmE helical domain ALFP_0174 PF10396 GTP-binding protein TrmE N-terminus ALFP_0177 PF01425 Amidase ALFP_0178 PF03466 LysR substrate binding domain ALFP_0178 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0181 PF03466 LysR substrate binding domain ALFP_0181 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0185 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_0187 PF02405 Permease MlaE ALFP_0188 PF00005 ABC transporter ALFP_0189 PF03886 ABC-type transport auxiliary lipoprotein component ALFP_0189 PF02470 MlaD protein ALFP_0192 PF13419 Haloacid dehalogenase-like hydrolase ALFP_0193 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0195 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_0198 PF00501 AMP-binding enzyme ALFP_0198 PF13193 AMP-binding enzyme C-terminal domain ALFP_0199 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0201 PF07729 FCD domain ALFP_0201 PF00392 Bacterial regulatory proteins, gntR family ALFP_0202 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0202 PF03466 LysR substrate binding domain ALFP_0203 PF01266 FAD dependent oxidoreductase ALFP_0205 PF02646 RmuC family ALFP_0207 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system ALFP_0208 PF00990 Diguanylate cyclase, GGDEF domain ALFP_0208 PF00563 EAL domain ALFP_0208 PF03707 Bacterial signalling protein N terminal repeat ALFP_0209 PF00708 Acylphosphatase ALFP_0211 PF16868 NMT1-like family ALFP_0213 PF00849 RNA pseudouridylate synthase ALFP_0214 PF17763 Glutaminase/Asparaginase C-terminal domain ALFP_0214 PF00710 Asparaginase, N-terminal ALFP_0215 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0216 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0217 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_0218 PF00005 ABC transporter ALFP_0219 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALFP_0219 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ALFP_0220 PF01168 Alanine racemase, N-terminal domain ALFP_0221 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0223 PF00501 AMP-binding enzyme ALFP_0224 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_0224 PF00005 ABC transporter ALFP_0225 PF02653 Branched-chain amino acid transport system / permease component ALFP_0228 PF00005 ABC transporter ALFP_0230 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_0232 PF00682 HMGL-like ALFP_0233 PF02481 DNA recombination-mediator protein A ALFP_0233 PF17782 DprA winged helix domain ALFP_0234 PF01327 Polypeptide deformylase ALFP_0235 PF02911 Formyl transferase, C-terminal domain ALFP_0235 PF00551 Formyl transferase ALFP_0236 PF00892 EamA-like transporter family ALFP_0237 PF01425 Amidase ALFP_0239 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_0242 PF07286 Protein of unknown function (DUF1445) ALFP_0243 PF03466 LysR substrate binding domain ALFP_0243 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0244 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ALFP_0245 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ALFP_0245 PF00534 Glycosyl transferases group 1 ALFP_0246 PF00313 'Cold-shock' DNA-binding domain ALFP_0247 PF00483 Nucleotidyl transferase ALFP_0249 PF03309 Type III pantothenate kinase ALFP_0250 PF02237 Biotin protein ligase C terminal domain ALFP_0250 PF03099 Biotin/lipoate A/B protein ligase family ALFP_0252 PF07943 Penicillin-binding protein 5, C-terminal domain ALFP_0252 PF00768 D-alanyl-D-alanine carboxypeptidase ALFP_0253 PF01063 Amino-transferase class IV ALFP_0254 PF04359 Protein of unknown function (DUF493) ALFP_0255 PF03099 Biotin/lipoate A/B protein ligase family ALFP_0256 PF00378 Enoyl-CoA hydratase/isomerase ALFP_0257 PF04055 Radical SAM superfamily ALFP_0257 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ALFP_0259 PF03167 Uracil DNA glycosylase superfamily ALFP_0270 PF00218 Indole-3-glycerol phosphate synthase ALFP_0271 PF00591 Glycosyl transferase family, a/b domain ALFP_0271 PF02885 Glycosyl transferase family, helical bundle domain ALFP_0272 PF00117 Glutamine amidotransferase class-I ALFP_0273 PF00425 chorismate binding enzyme ALFP_0273 PF04715 Anthranilate synthase component I, N terminal region ALFP_0274 PF13419 Haloacid dehalogenase-like hydrolase ALFP_0277 PF04379 ApaG domain ALFP_0278 PF03562 MltA specific insert domain ALFP_0278 PF06725 3D domain ALFP_0279 PF01494 FAD binding domain ALFP_0280 PF13098 Thioredoxin-like domain ALFP_0280 PF10411 Disulfide bond isomerase protein N-terminus ALFP_0282 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_0282 PF17200 Single Cache domain 2 ALFP_0282 PF00672 HAMP domain ALFP_0284 PF00106 short chain dehydrogenase ALFP_0285 PF00857 Isochorismatase family ALFP_0285 PF00550 Phosphopantetheine attachment site ALFP_0286 PF00425 chorismate binding enzyme ALFP_0288 PF05977 Transmembrane secretion effector ALFP_0289 PF00501 AMP-binding enzyme ALFP_0289 PF00550 Phosphopantetheine attachment site ALFP_0289 PF00668 Condensation domain ALFP_0289 PF00975 Thioesterase domain ALFP_0290 PF00857 Isochorismatase family ALFP_0290 PF00550 Phosphopantetheine attachment site ALFP_0291 PF00501 AMP-binding enzyme ALFP_0291 PF13193 AMP-binding enzyme C-terminal domain ALFP_0293 PF00005 ABC transporter ALFP_0294 PF00005 ABC transporter ALFP_0294 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_0297 PF13458 Periplasmic binding protein ALFP_0300 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0301 PF00005 ABC transporter ALFP_0303 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALFP_0303 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALFP_0307 PF00005 ABC transporter ALFP_0308 PF01032 FecCD transport family ALFP_0309 PF00756 Putative esterase ALFP_0310 PF00271 Helicase conserved C-terminal domain ALFP_0310 PF00270 DEAD/DEAH box helicase ALFP_0311 PF07690 Major Facilitator Superfamily ALFP_0313 PF03466 LysR substrate binding domain ALFP_0313 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0315 PF03471 Transporter associated domain ALFP_0315 PF03741 Integral membrane protein TerC family ALFP_0317 PF05726 Pirin C-terminal cupin domain ALFP_0317 PF02678 Pirin ALFP_0320 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ALFP_0320 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ALFP_0322 PF01063 Amino-transferase class IV ALFP_0323 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0323 PF03466 LysR substrate binding domain ALFP_0324 PF04235 Protein of unknown function (DUF418) ALFP_0326 PF04229 GrpB protein ALFP_0327 PF13673 Acetyltransferase (GNAT) domain ALFP_0328 PF01636 Phosphotransferase enzyme family ALFP_0331 PF01613 Flavin reductase like domain ALFP_0332 PF01546 Peptidase family M20/M25/M40 ALFP_0332 PF07687 Peptidase dimerisation domain ALFP_0333 PF01979 Amidohydrolase family ALFP_0334 PF01979 Amidohydrolase family ALFP_0335 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0336 PF00005 ABC transporter ALFP_0338 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0338 PF03466 LysR substrate binding domain ALFP_0339 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_0340 PF00005 ABC transporter ALFP_0341 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0342 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0345 PF01548 Transposase ALFP_0345 PF02371 Transposase IS116/IS110/IS902 family ALFP_0346 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALFP_0346 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALFP_0347 PF00171 Aldehyde dehydrogenase family ALFP_0349 PF06433 Methylamine dehydrogenase heavy chain (MADH) ALFP_0351 PF00578 AhpC/TSA family ALFP_0352 PF02975 Methylamine dehydrogenase, L chain ALFP_0354 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ALFP_0354 PF12833 Helix-turn-helix domain ALFP_0356 PF01208 Uroporphyrinogen decarboxylase (URO-D) ALFP_0357 PF17764 3′ DNA-binding domain (3′BD) ALFP_0357 PF18074 Primosomal protein N C-terminal domain ALFP_0357 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ALFP_0357 PF00270 DEAD/DEAH box helicase ALFP_0357 PF00271 Helicase conserved C-terminal domain ALFP_0358 PF13361 UvrD-like helicase C-terminal domain ALFP_0358 PF00580 UvrD/REP helicase N-terminal domain ALFP_0360 PF02371 Transposase IS116/IS110/IS902 family ALFP_0360 PF01548 Transposase ALFP_0361 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ALFP_0361 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_0362 PF04898 Glutamate synthase central domain ALFP_0362 PF01645 Conserved region in glutamate synthase ALFP_0362 PF01493 GXGXG motif ALFP_0362 PF00310 Glutamine amidotransferases class-II ALFP_0364 PF00378 Enoyl-CoA hydratase/isomerase ALFP_0366 PF02515 CoA-transferase family III ALFP_0367 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain ALFP_0367 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALFP_0367 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALFP_0369 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_0372 PF07715 TonB-dependent Receptor Plug Domain ALFP_0372 PF00593 TonB dependent receptor ALFP_0373 PF04262 Glutamate-cysteine ligase ALFP_0376 PF00561 alpha/beta hydrolase fold ALFP_0378 PF07690 Major Facilitator Superfamily ALFP_0379 PF03458 UPF0126 domain ALFP_0380 PF04172 LrgB-like family ALFP_0382 PF01042 Endoribonuclease L-PSP ALFP_0383 PF01042 Endoribonuclease L-PSP ALFP_0386 PF05662 Coiled stalk of trimeric autotransporter adhesin ALFP_0386 PF13018 Extended Signal Peptide of Type V secretion system ALFP_0386 PF05658 Head domain of trimeric autotransporter adhesin ALFP_0386 PF03895 YadA-like membrane anchor domain ALFP_0390 PF01810 LysE type translocator ALFP_0394 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0394 PF03466 LysR substrate binding domain ALFP_0396 PF00202 Aminotransferase class-III ALFP_0399 PF01923 Cobalamin adenosyltransferase ALFP_0402 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_0402 PF07724 AAA domain (Cdc48 subfamily) ALFP_0403 PF00227 Proteasome subunit ALFP_0404 PF01258 Prokaryotic dksA/traR C4-type zinc finger ALFP_0405 PF07683 Cobalamin synthesis protein cobW C-terminal domain ALFP_0405 PF02492 CobW/HypB/UreG, nucleotide-binding domain ALFP_0406 PF01475 Ferric uptake regulator family ALFP_0407 PF00005 ABC transporter ALFP_0408 PF00950 ABC 3 transport family ALFP_0409 PF01297 Zinc-uptake complex component A periplasmic ALFP_0410 PF02899 Phage integrase, N-terminal SAM-like domain ALFP_0410 PF00589 Phage integrase family ALFP_0412 PF01678 Diaminopimelate epimerase ALFP_0413 PF03279 Bacterial lipid A biosynthesis acyltransferase ALFP_0415 PF00438 S-adenosylmethionine synthetase, N-terminal domain ALFP_0415 PF02773 S-adenosylmethionine synthetase, C-terminal domain ALFP_0415 PF02772 S-adenosylmethionine synthetase, central domain ALFP_0416 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ALFP_0416 PF05221 S-adenosyl-L-homocysteine hydrolase ALFP_0417 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV ALFP_0418 PF02219 Methylenetetrahydrofolate reductase ALFP_0420 PF14718 Soluble lytic murein transglycosylase L domain ALFP_0420 PF01464 Transglycosylase SLT domain ALFP_0421 PF01743 Poly A polymerase head domain ALFP_0421 PF12627 Probable RNA and SrmB- binding site of polymerase A ALFP_0424 PF01795 MraW methylase family ALFP_0425 PF01925 Sulfite exporter TauE/SafE ALFP_0426 PF00311 Phosphoenolpyruvate carboxylase ALFP_0427 PF00920 Dehydratase family ALFP_0428 PF02540 NAD synthase ALFP_0430 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_0430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_0430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_0431 PF02515 CoA-transferase family III ALFP_0432 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0434 PF01594 AI-2E family transporter ALFP_0435 PF00589 Phage integrase family ALFP_0444 PF18821 Large polyvalent protein-associated domain 7 ALFP_0444 PF03432 Relaxase/Mobilisation nuclease domain ALFP_0451 PF00271 Helicase conserved C-terminal domain ALFP_0451 PF00176 SNF2 family N-terminal domain ALFP_0455 PF01555 DNA methylase ALFP_0455 PF18273 Type III R-M EcoP15I C-terminal domain ALFP_0456 PF06250 YhcG PDDEXK nuclease domain ALFP_0456 PF17761 DUF1016 N-terminal domain ALFP_0457 PF04851 Type III restriction enzyme, res subunit ALFP_0457 PF08774 VRR-NUC domain ALFP_0459 PF13609 Gram-negative porin ALFP_0460 PF00171 Aldehyde dehydrogenase family ALFP_0463 PF12833 Helix-turn-helix domain ALFP_0463 PF14525 AraC-binding-like domain ALFP_0464 PF08361 MAATS-type transcriptional repressor, C-terminal region ALFP_0464 PF00440 Bacterial regulatory proteins, tetR family ALFP_0467 PF00501 AMP-binding enzyme ALFP_0467 PF13193 AMP-binding enzyme C-terminal domain ALFP_0469 PF01494 FAD binding domain ALFP_0470 PF07690 Major Facilitator Superfamily ALFP_0472 PF00248 Aldo/keto reductase family ALFP_0473 PF07690 Major Facilitator Superfamily ALFP_0474 PF03466 LysR substrate binding domain ALFP_0474 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0476 PF05974 Domain of unknown function (DUF892) ALFP_0481 PF01047 MarR family ALFP_0482 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_0482 PF00175 Oxidoreductase NAD-binding domain ALFP_0482 PF00970 Oxidoreductase FAD-binding domain ALFP_0484 PF00593 TonB dependent receptor ALFP_0484 PF07715 TonB-dependent Receptor Plug Domain ALFP_0485 PF01497 Periplasmic binding protein ALFP_0486 PF00005 ABC transporter ALFP_0487 PF01032 FecCD transport family ALFP_0488 PF01032 FecCD transport family ALFP_0489 PF00005 ABC transporter ALFP_0490 PF08021 Siderophore-interacting FAD-binding domain ALFP_0490 PF04954 Siderophore-interacting protein ALFP_0490 PF00005 ABC transporter ALFP_0490 PF00664 ABC transporter transmembrane region ALFP_0492 PF09330 D-lactate dehydrogenase, membrane binding ALFP_0492 PF01565 FAD binding domain ALFP_0493 PF01070 FMN-dependent dehydrogenase ALFP_0494 PF07729 FCD domain ALFP_0494 PF00392 Bacterial regulatory proteins, gntR family ALFP_0495 PF02652 L-lactate permease ALFP_0498 PF07702 UTRA domain ALFP_0498 PF00392 Bacterial regulatory proteins, gntR family ALFP_0499 PF01037 Lrp/AsnC ligand binding domain ALFP_0500 PF00266 Aminotransferase class-V ALFP_0501 PF00324 Amino acid permease ALFP_0504 PF00578 AhpC/TSA family ALFP_0505 PF01970 Tripartite tricarboxylate transporter TctA family ALFP_0507 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0508 PF08220 DeoR-like helix-turn-helix domain ALFP_0508 PF00455 DeoR C terminal sensor domain ALFP_0509 PF00005 ABC transporter ALFP_0509 PF08402 TOBE domain ALFP_0510 PF13416 Bacterial extracellular solute-binding protein ALFP_0511 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0512 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0514 PF00593 TonB dependent receptor ALFP_0514 PF07660 Secretin and TonB N terminus short domain ALFP_0514 PF07715 TonB-dependent Receptor Plug Domain ALFP_0517 PF03741 Integral membrane protein TerC family ALFP_0518 PF05698 Bacterial trigger factor protein (TF) C-terminus ALFP_0520 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ALFP_0522 PF01966 HD domain ALFP_0523 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0524 PF13378 Enolase C-terminal domain-like ALFP_0524 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ALFP_0525 PF01479 S4 domain ALFP_0526 PF07690 Major Facilitator Superfamily ALFP_0527 PF00440 Bacterial regulatory proteins, tetR family ALFP_0529 PF01425 Amidase ALFP_0530 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0531 PF03466 LysR substrate binding domain ALFP_0531 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0536 PF00183 Hsp90 protein ALFP_0536 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_0537 PF07715 TonB-dependent Receptor Plug Domain ALFP_0537 PF00593 TonB dependent receptor ALFP_0538 PF18331 PKHD-type hydroxylase C-terminal domain ALFP_0538 PF13640 2OG-Fe(II) oxygenase superfamily ALFP_0539 PF01070 FMN-dependent dehydrogenase ALFP_0540 PF01510 N-acetylmuramoyl-L-alanine amidase ALFP_0543 PF02978 Signal peptide binding domain ALFP_0543 PF02881 SRP54-type protein, helical bundle domain ALFP_0543 PF00448 SRP54-type protein, GTPase domain ALFP_0544 PF04972 BON domain ALFP_0544 PF01476 LysM domain ALFP_0545 PF02597 ThiS family ALFP_0545 PF05690 Thiazole biosynthesis protein ThiG ALFP_0546 PF00561 alpha/beta hydrolase fold ALFP_0547 PF02390 Putative methyltransferase ALFP_0551 PF00857 Isochorismatase family ALFP_0551 PF00550 Phosphopantetheine attachment site ALFP_0553 PF14525 AraC-binding-like domain ALFP_0553 PF12833 Helix-turn-helix domain ALFP_0557 PF03466 LysR substrate binding domain ALFP_0557 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0558 PF01699 Sodium/calcium exchanger protein ALFP_0559 PF00072 Response regulator receiver domain ALFP_0559 PF00990 Diguanylate cyclase, GGDEF domain ALFP_0560 PF01323 DSBA-like thioredoxin domain ALFP_0561 PF07690 Major Facilitator Superfamily ALFP_0561 PF00083 Sugar (and other) transporter ALFP_0562 PF00596 Class II Aldolase and Adducin N-terminal domain ALFP_0565 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ALFP_0566 PF07883 Cupin domain ALFP_0566 PF05899 Protein of unknown function (DUF861) ALFP_0567 PF03466 LysR substrate binding domain ALFP_0567 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0568 PF01545 Cation efflux family ALFP_0568 PF16916 Dimerisation domain of Zinc Transporter ALFP_0569 PF01588 Putative tRNA binding domain ALFP_0569 PF09334 tRNA synthetases class I (M) ALFP_0571 PF10609 NUBPL iron-transfer P-loop NTPase ALFP_0574 PF00692 dUTPase ALFP_0575 PF01276 Orn/Lys/Arg decarboxylase, major domain ALFP_0575 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ALFP_0575 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ALFP_0577 PF01597 Glycine cleavage H-protein ALFP_0578 PF00186 Dihydrofolate reductase ALFP_0579 PF00303 Thymidylate synthase ALFP_0580 PF02566 OsmC-like protein ALFP_0581 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_0586 PF03232 Ubiquinone biosynthesis protein COQ7 ALFP_0587 PF02887 Pyruvate kinase, alpha/beta domain ALFP_0587 PF00224 Pyruvate kinase, barrel domain ALFP_0588 PF03928 Haem-degrading ALFP_0589 PF13660 Domain of unknown function (DUF4147) ALFP_0589 PF05161 MOFRL family ALFP_0590 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALFP_0590 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALFP_0591 PF01261 Xylose isomerase-like TIM barrel ALFP_0592 PF00205 Thiamine pyrophosphate enzyme, central domain ALFP_0592 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALFP_0592 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALFP_0593 PF03466 LysR substrate binding domain ALFP_0593 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0595 PF00860 Permease family ALFP_0596 PF01361 Tautomerase enzyme ALFP_0597 PF00596 Class II Aldolase and Adducin N-terminal domain ALFP_0598 PF04115 Ureidoglycolate lyase ALFP_0599 PF01014 Uricase ALFP_0599 PF09349 OHCU decarboxylase ALFP_0600 PF03466 LysR substrate binding domain ALFP_0600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0601 PF00953 Glycosyl transferase family 4 ALFP_0602 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALFP_0602 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALFP_0602 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALFP_0603 PF01370 NAD dependent epimerase/dehydratase family ALFP_0605 PF00534 Glycosyl transferases group 1 ALFP_0605 PF13439 Glycosyltransferase Family 4 ALFP_0606 PF13439 Glycosyltransferase Family 4 ALFP_0606 PF00534 Glycosyl transferases group 1 ALFP_0607 PF00534 Glycosyl transferases group 1 ALFP_0607 PF13477 Glycosyl transferase 4-like ALFP_0608 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALFP_0608 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALFP_0608 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALFP_0608 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALFP_0609 PF02913 FAD linked oxidases, C-terminal domain ALFP_0609 PF01565 FAD binding domain ALFP_0611 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALFP_0612 PF04209 homogentisate 1,2-dioxygenase ALFP_0614 PF01494 FAD binding domain ALFP_0616 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ALFP_0616 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ALFP_0616 PF06827 Zinc finger found in FPG and IleRS ALFP_0618 PF03550 Outer membrane lipoprotein LolB ALFP_0619 PF08544 GHMP kinases C terminal ALFP_0619 PF00288 GHMP kinases N terminal domain ALFP_0620 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ALFP_0620 PF14572 Phosphoribosyl synthetase-associated domain ALFP_0621 PF14693 Ribosomal protein TL5, C-terminal domain ALFP_0621 PF01386 Ribosomal L25p family ALFP_0622 PF01195 Peptidyl-tRNA hydrolase ALFP_0624 PF01926 50S ribosome-binding GTPase ALFP_0624 PF06071 Protein of unknown function (DUF933) ALFP_0629 PF00892 EamA-like transporter family ALFP_0631 PF00005 ABC transporter ALFP_0631 PF16326 ABC transporter C-terminal domain ALFP_0631 PF12848 ABC transporter ALFP_0633 PF03797 Autotransporter beta-domain ALFP_0633 PF00657 GDSL-like Lipase/Acylhydrolase ALFP_0634 PF00484 Carbonic anhydrase ALFP_0635 PF03466 LysR substrate binding domain ALFP_0635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0637 PF00005 ABC transporter ALFP_0638 PF03379 CcmB protein ALFP_0639 PF01578 Cytochrome C assembly protein ALFP_0641 PF03100 CcmE ALFP_0642 PF01578 Cytochrome C assembly protein ALFP_0642 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ALFP_0643 PF08534 Redoxin ALFP_0644 PF03918 Cytochrome C biogenesis protein ALFP_0646 PF02683 Cytochrome C biogenesis protein transmembrane region ALFP_0648 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALFP_0648 PF02805 Metal binding domain of Ada ALFP_0648 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALFP_0648 PF12833 Helix-turn-helix domain ALFP_0652 PF02653 Branched-chain amino acid transport system / permease component ALFP_0653 PF11862 Domain of unknown function (DUF3382) ALFP_0653 PF02653 Branched-chain amino acid transport system / permease component ALFP_0654 PF00005 ABC transporter ALFP_0654 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_0655 PF00005 ABC transporter ALFP_0656 PF03150 Di-haem cytochrome c peroxidase ALFP_0656 PF00034 Cytochrome c ALFP_0657 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALFP_0657 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_0657 PF01842 ACT domain ALFP_0658 PF02082 Transcriptional regulator ALFP_0659 PF01152 Bacterial-like globin ALFP_0660 PF00535 Glycosyl transferase family 2 ALFP_0666 PF00582 Universal stress protein family ALFP_0668 PF02634 FdhD/NarQ family ALFP_0669 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALFP_0669 PF12838 4Fe-4S dicluster domain ALFP_0669 PF00384 Molybdopterin oxidoreductase ALFP_0669 PF01568 Molydopterin dinucleotide binding domain ALFP_0669 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ALFP_0670 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ALFP_0670 PF00037 4Fe-4S binding domain ALFP_0670 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ALFP_0672 PF12727 PBP superfamily domain ALFP_0672 PF12728 Helix-turn-helix domain ALFP_0673 PF06463 Molybdenum Cofactor Synthesis C ALFP_0673 PF04055 Radical SAM superfamily ALFP_0674 PF12804 MobA-like NTP transferase domain ALFP_0675 PF03453 MoeA N-terminal region (domain I and II) ALFP_0675 PF03454 MoeA C-terminal region (domain IV) ALFP_0675 PF00994 Probable molybdopterin binding domain ALFP_0676 PF00994 Probable molybdopterin binding domain ALFP_0677 PF02391 MoaE protein ALFP_0679 PF01967 MoaC family ALFP_0680 PF00196 Bacterial regulatory proteins, luxR family ALFP_0680 PF00072 Response regulator receiver domain ALFP_0681 PF00989 PAS fold ALFP_0681 PF00512 His Kinase A (phospho-acceptor) domain ALFP_0681 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_0682 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0683 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ALFP_0684 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_0685 PF08534 Redoxin ALFP_0689 PF06968 Biotin and Thiamin Synthesis associated domain ALFP_0689 PF04055 Radical SAM superfamily ALFP_0692 PF00873 AcrB/AcrD/AcrF family ALFP_0693 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALFP_0699 PF00990 Diguanylate cyclase, GGDEF domain ALFP_0699 PF00563 EAL domain ALFP_0699 PF03707 Bacterial signalling protein N terminal repeat ALFP_0700 PF00795 Carbon-nitrogen hydrolase ALFP_0701 PF00571 CBS domain ALFP_0701 PF03471 Transporter associated domain ALFP_0702 PF02130 Uncharacterized protein family UPF0054 ALFP_0703 PF02562 PhoH-like protein ALFP_0704 PF04055 Radical SAM superfamily ALFP_0704 PF00919 Uncharacterized protein family UPF0004 ALFP_0704 PF01938 TRAM domain ALFP_0706 PF00557 Metallopeptidase family M24 ALFP_0707 PF07549 SecD/SecF GG Motif ALFP_0707 PF02355 Protein export membrane protein ALFP_0708 PF07549 SecD/SecF GG Motif ALFP_0708 PF13721 SecD export protein N-terminal TM region ALFP_0708 PF02355 Protein export membrane protein ALFP_0709 PF02699 Preprotein translocase subunit ALFP_0710 PF01702 Queuine tRNA-ribosyltransferase ALFP_0711 PF02547 Queuosine biosynthesis protein ALFP_0712 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ALFP_0715 PF05957 Bacterial protein of unknown function (DUF883) ALFP_0718 PF03466 LysR substrate binding domain ALFP_0718 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0721 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family ALFP_0724 PF01425 Amidase ALFP_0726 PF00083 Sugar (and other) transporter ALFP_0726 PF08946 Osmosensory transporter coiled coil ALFP_0727 PF03466 LysR substrate binding domain ALFP_0727 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0728 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_0729 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ALFP_0730 PF01464 Transglycosylase SLT domain ALFP_0731 PF00155 Aminotransferase class I and II ALFP_0734 PF00390 Malic enzyme, N-terminal domain ALFP_0734 PF03949 Malic enzyme, NAD binding domain ALFP_0734 PF01515 Phosphate acetyl/butaryl transferase ALFP_0736 PF01337 Barstar (barnase inhibitor) ALFP_0737 PF04452 RNA methyltransferase ALFP_0738 PF02779 Transketolase, pyrimidine binding domain ALFP_0738 PF02780 Transketolase, C-terminal domain ALFP_0738 PF00456 Transketolase, thiamine diphosphate binding domain ALFP_0739 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALFP_0739 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALFP_0740 PF00162 Phosphoglycerate kinase ALFP_0743 PF00171 Aldehyde dehydrogenase family ALFP_0745 PF00994 Probable molybdopterin binding domain ALFP_0746 PF01116 Fructose-bisphosphate aldolase class-II ALFP_0747 PF01259 SAICAR synthetase ALFP_0748 PF00731 AIR carboxylase ALFP_0749 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ALFP_0749 PF02222 ATP-grasp domain ALFP_0750 PF01300 Telomere recombination ALFP_0750 PF03481 Putative GTP-binding controlling metal-binding ALFP_0751 PF12697 Alpha/beta hydrolase family ALFP_0752 PF00171 Aldehyde dehydrogenase family ALFP_0752 PF01575 MaoC like domain ALFP_0753 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_0753 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_0753 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_0754 PF03466 LysR substrate binding domain ALFP_0754 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0756 PF00551 Formyl transferase ALFP_0757 PF01266 FAD dependent oxidoreductase ALFP_0758 PF01613 Flavin reductase like domain ALFP_0759 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ALFP_0759 PF01243 Pyridoxamine 5'-phosphate oxidase ALFP_0761 PF00899 ThiF family ALFP_0763 PF00425 chorismate binding enzyme ALFP_0763 PF04715 Anthranilate synthase component I, N terminal region ALFP_0764 PF17760 UvrA interaction domain ALFP_0764 PF00005 ABC transporter ALFP_0764 PF17755 UvrA DNA-binding domain ALFP_0766 PF00535 Glycosyl transferase family 2 ALFP_0768 PF12848 ABC transporter ALFP_0768 PF00005 ABC transporter ALFP_0772 PF03776 Septum formation topological specificity factor MinE ALFP_0773 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ALFP_0774 PF03775 Septum formation inhibitor MinC, C-terminal domain ALFP_0774 PF05209 Septum formation inhibitor MinC, N-terminal domain ALFP_0775 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALFP_0775 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ALFP_0776 PF01654 Cytochrome bd terminal oxidase subunit I ALFP_0777 PF02322 Cytochrome bd terminal oxidase subunit II ALFP_0778 PF00654 Voltage gated chloride channel ALFP_0780 PF09382 RQC domain ALFP_0780 PF00271 Helicase conserved C-terminal domain ALFP_0780 PF16124 RecQ zinc-binding ALFP_0780 PF00270 DEAD/DEAH box helicase ALFP_0780 PF00570 HRDC domain ALFP_0781 PF02867 Ribonucleotide reductase, barrel domain ALFP_0781 PF00317 Ribonucleotide reductase, all-alpha domain ALFP_0781 PF03477 ATP cone domain ALFP_0782 PF00268 Ribonucleotide reductase, small chain ALFP_0783 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_0785 PF02381 MraZ protein, putative antitoxin-like ALFP_0786 PF01795 MraW methylase family ALFP_0787 PF04999 Cell division protein FtsL ALFP_0788 PF00905 Penicillin binding protein transpeptidase domain ALFP_0788 PF03717 Penicillin-binding Protein dimerisation domain ALFP_0789 PF02875 Mur ligase family, glutamate ligase domain ALFP_0789 PF01225 Mur ligase family, catalytic domain ALFP_0789 PF08245 Mur ligase middle domain ALFP_0790 PF00953 Glycosyl transferase family 4 ALFP_0791 PF08245 Mur ligase middle domain ALFP_0791 PF02875 Mur ligase family, glutamate ligase domain ALFP_0792 PF01098 Cell cycle protein ALFP_0793 PF04101 Glycosyltransferase family 28 C-terminal domain ALFP_0793 PF03033 Glycosyltransferase family 28 N-terminal domain ALFP_0794 PF01225 Mur ligase family, catalytic domain ALFP_0794 PF02875 Mur ligase family, glutamate ligase domain ALFP_0794 PF08245 Mur ligase middle domain ALFP_0795 PF07478 D-ala D-ala ligase C-terminus ALFP_0795 PF01820 D-ala D-ala ligase N-terminus ALFP_0796 PF08478 POTRA domain, FtsQ-type ALFP_0796 PF03799 Cell division protein FtsQ ALFP_0797 PF02491 SHS2 domain inserted in FTSA ALFP_0798 PF00091 Tubulin/FtsZ family, GTPase domain ALFP_0798 PF12327 FtsZ family, C-terminal domain ALFP_0799 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ALFP_0801 PF01464 Transglycosylase SLT domain ALFP_0801 PF01551 Peptidase family M23 ALFP_0801 PF10145 Phage-related minor tail protein ALFP_0802 PF07517 SecA DEAD-like domain ALFP_0802 PF02810 SEC-C motif ALFP_0802 PF01043 SecA preprotein cross-linking domain ALFP_0802 PF07516 SecA Wing and Scaffold domain ALFP_0804 PF03448 MgtE intracellular N domain ALFP_0804 PF01769 Divalent cation transporter ALFP_0804 PF00571 CBS domain ALFP_0805 PF03061 Thioesterase superfamily ALFP_0806 PF07687 Peptidase dimerisation domain ALFP_0806 PF01546 Peptidase family M20/M25/M40 ALFP_0807 PF00501 AMP-binding enzyme ALFP_0807 PF13193 AMP-binding enzyme C-terminal domain ALFP_0808 PF00459 Inositol monophosphatase family ALFP_0809 PF01266 FAD dependent oxidoreductase ALFP_0809 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ALFP_0811 PF00005 ABC transporter ALFP_0811 PF09383 NIL domain ALFP_0812 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0813 PF03180 NLPA lipoprotein ALFP_0814 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_0815 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0816 PF00005 ABC transporter ALFP_0818 PF00483 Nucleotidyl transferase ALFP_0819 PF01636 Phosphotransferase enzyme family ALFP_0820 PF04453 LPS transport system D ALFP_0821 PF00639 PPIC-type PPIASE domain ALFP_0821 PF09312 SurA N-terminal domain ALFP_0822 PF00398 Ribosomal RNA adenine dimethylase ALFP_0823 PF07670 Nucleoside recognition ALFP_0824 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_0826 PF01553 Acyltransferase ALFP_0828 PF05746 DALR anticodon binding domain ALFP_0828 PF02092 Glycyl-tRNA synthetase beta subunit ALFP_0829 PF02091 Glycyl-tRNA synthetase alpha subunit ALFP_0831 PF00378 Enoyl-CoA hydratase/isomerase ALFP_0832 PF05681 Fumarate hydratase (Fumerase) ALFP_0832 PF05683 Fumarase C-terminus ALFP_0833 PF00440 Bacterial regulatory proteins, tetR family ALFP_0835 PF07690 Major Facilitator Superfamily ALFP_0838 PF03167 Uracil DNA glycosylase superfamily ALFP_0839 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ALFP_0840 PF12627 Probable RNA and SrmB- binding site of polymerase A ALFP_0840 PF12626 Polymerase A arginine-rich C-terminus ALFP_0840 PF01743 Poly A polymerase head domain ALFP_0842 PF00308 Bacterial dnaA protein ALFP_0842 PF08299 Bacterial dnaA protein helix-turn-helix ALFP_0843 PF02769 AIR synthase related protein, C-terminal domain ALFP_0843 PF00586 AIR synthase related protein, N-terminal domain ALFP_0844 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ALFP_0846 PF01119 DNA mismatch repair protein, C-terminal domain ALFP_0846 PF08676 MutL C terminal dimerisation domain ALFP_0847 PF09335 SNARE associated Golgi protein ALFP_0848 PF11741 AMIN domain ALFP_0848 PF01520 N-acetylmuramoyl-L-alanine amidase ALFP_0849 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ALFP_0851 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0852 PF00390 Malic enzyme, N-terminal domain ALFP_0852 PF01515 Phosphate acetyl/butaryl transferase ALFP_0852 PF03949 Malic enzyme, NAD binding domain ALFP_0853 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0853 PF03466 LysR substrate binding domain ALFP_0854 PF00171 Aldehyde dehydrogenase family ALFP_0855 PF00701 Dihydrodipicolinate synthetase family ALFP_0857 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_0864 PF01638 HxlR-like helix-turn-helix ALFP_0865 PF13460 NAD(P)H-binding ALFP_0867 PF07690 Major Facilitator Superfamily ALFP_0869 PF04073 Aminoacyl-tRNA editing domain ALFP_0870 PF00589 Phage integrase family ALFP_0870 PF02899 Phage integrase, N-terminal SAM-like domain ALFP_0872 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0873 PF03459 TOBE domain ALFP_0873 PF00005 ABC transporter ALFP_0874 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0874 PF03459 TOBE domain ALFP_0876 PF12705 PD-(D/E)XK nuclease superfamily ALFP_0876 PF13361 UvrD-like helicase C-terminal domain ALFP_0876 PF00580 UvrD/REP helicase N-terminal domain ALFP_0877 PF12169 DNA polymerase III subunits gamma and tau domain III ALFP_0877 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ALFP_0877 PF12170 DNA polymerase III tau subunit V interacting with alpha ALFP_0878 PF02575 YbaB/EbfC DNA-binding family ALFP_0879 PF02132 RecR protein ALFP_0879 PF13662 Toprim domain ALFP_0880 PF09084 NMT1/THI5 like ALFP_0881 PF00005 ABC transporter ALFP_0882 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0885 PF00593 TonB dependent receptor ALFP_0885 PF07715 TonB-dependent Receptor Plug Domain ALFP_0887 PF00923 Transaldolase/Fructose-6-phosphate aldolase ALFP_0888 PF00117 Glutamine amidotransferase class-I ALFP_0888 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ALFP_0889 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ALFP_0889 PF02142 MGS-like domain ALFP_0889 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALFP_0892 PF00300 Histidine phosphatase superfamily (branch 1) ALFP_0893 PF00860 Permease family ALFP_0894 PF01272 Transcription elongation factor, GreA/GreB, C-term ALFP_0894 PF03449 Transcription elongation factor, N-terminal ALFP_0895 PF01985 CRS1 / YhbY (CRM) domain ALFP_0896 PF01728 FtsJ-like methyltransferase ALFP_0897 PF01434 Peptidase family M41 ALFP_0897 PF06480 FtsH Extracellular ALFP_0897 PF17862 AAA+ lid domain ALFP_0897 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_0898 PF00809 Pterin binding enzyme ALFP_0899 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALFP_0899 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALFP_0899 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALFP_0899 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALFP_0901 PF02541 Ppx/GppA phosphatase family ALFP_0902 PF13090 Polyphosphate kinase C-terminal domain 2 ALFP_0902 PF17941 Polyphosphate kinase C-terminal domain 1 ALFP_0902 PF13089 Polyphosphate kinase N-terminal domain ALFP_0902 PF02503 Polyphosphate kinase middle domain ALFP_0903 PF12849 PBP superfamily domain ALFP_0904 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0905 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0906 PF00005 ABC transporter ALFP_0907 PF13193 AMP-binding enzyme C-terminal domain ALFP_0907 PF00501 AMP-binding enzyme ALFP_0910 PF00486 Transcriptional regulatory protein, C terminal ALFP_0910 PF00072 Response regulator receiver domain ALFP_0911 PF00672 HAMP domain ALFP_0911 PF00512 His Kinase A (phospho-acceptor) domain ALFP_0911 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_0914 PF03466 LysR substrate binding domain ALFP_0914 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0916 PF01593 Flavin containing amine oxidoreductase ALFP_0917 PF00034 Cytochrome c ALFP_0917 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_0918 PF04239 Protein of unknown function (DUF421) ALFP_0920 PF00884 Sulfatase ALFP_0922 PF03466 LysR substrate binding domain ALFP_0922 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0925 PF00474 Sodium:solute symporter family ALFP_0926 PF08223 PaaX-like protein C-terminal domain ALFP_0926 PF07848 PaaX-like protein ALFP_0927 PF13091 PLD-like domain ALFP_0927 PF13396 Phospholipase_D-nuclease N-terminal ALFP_0929 PF01300 Telomere recombination ALFP_0930 PF02163 Peptidase family M50 ALFP_0931 PF00701 Dihydrodipicolinate synthetase family ALFP_0932 PF06804 NlpB/DapX lipoprotein ALFP_0936 PF00202 Aminotransferase class-III ALFP_0937 PF00155 Aminotransferase class I and II ALFP_0938 PF00067 Cytochrome P450 ALFP_0940 PF03594 Benzoate membrane transport protein ALFP_0942 PF08007 Cupin superfamily protein ALFP_0943 PF01624 MutS domain I ALFP_0943 PF05192 MutS domain III ALFP_0943 PF05188 MutS domain II ALFP_0943 PF05190 MutS family domain IV ALFP_0943 PF00488 MutS domain V ALFP_0946 PF00593 TonB dependent receptor ALFP_0946 PF07715 TonB-dependent Receptor Plug Domain ALFP_0947 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALFP_0948 PF00005 ABC transporter ALFP_0948 PF02687 FtsX-like permease family ALFP_0948 PF12704 MacB-like periplasmic core domain ALFP_0949 PF02321 Outer membrane efflux protein ALFP_0950 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ALFP_0951 PF00005 ABC transporter ALFP_0951 PF00664 ABC transporter transmembrane region ALFP_0953 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0954 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0954 PF03466 LysR substrate binding domain ALFP_0955 PF00296 Luciferase-like monooxygenase ALFP_0957 PF00924 Mechanosensitive ion channel ALFP_0957 PF05552 Conserved TM helix ALFP_0958 PF03466 LysR substrate binding domain ALFP_0958 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0959 PF00550 Phosphopantetheine attachment site ALFP_0959 PF14765 Polyketide synthase dehydratase ALFP_0959 PF02801 Beta-ketoacyl synthase, C-terminal domain ALFP_0959 PF00109 Beta-ketoacyl synthase, N-terminal domain ALFP_0959 PF00107 Zinc-binding dehydrogenase ALFP_0959 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_0959 PF00698 Acyl transferase domain ALFP_0959 PF08659 KR domain ALFP_0959 PF16197 Ketoacyl-synthetase C-terminal extension ALFP_0960 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ALFP_0963 PF01039 Carboxyl transferase domain ALFP_0964 PF06857 Malonate decarboxylase delta subunit (MdcD) ALFP_0965 PF16957 Malonate decarboxylase, alpha subunit, transporter ALFP_0966 PF01425 Amidase ALFP_0968 PF00588 SpoU rRNA Methylase family ALFP_0969 PF00459 Inositol monophosphatase family ALFP_0970 PF03741 Integral membrane protein TerC family ALFP_0970 PF03471 Transporter associated domain ALFP_0971 PF02673 Bacitracin resistance protein BacA ALFP_0974 PF00149 Calcineurin-like phosphoesterase ALFP_0975 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALFP_0977 PF01406 tRNA synthetases class I (C) catalytic domain ALFP_0977 PF09190 DALR domain ALFP_0979 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ALFP_0980 PF01171 PP-loop family ALFP_0980 PF09179 TilS substrate binding domain ALFP_0981 PF01842 ACT domain ALFP_0981 PF13840 ACT domain ALFP_0981 PF00696 Amino acid kinase family ALFP_0984 PF01145 SPFH domain / Band 7 family ALFP_0986 PF02311 AraC-like ligand binding domain ALFP_0986 PF12833 Helix-turn-helix domain ALFP_0987 PF00795 Carbon-nitrogen hydrolase ALFP_0989 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_0991 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0992 PF08402 TOBE domain ALFP_0992 PF00005 ABC transporter ALFP_0993 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ALFP_0993 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ALFP_0994 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ALFP_0995 PF02233 NAD(P) transhydrogenase beta subunit ALFP_0999 PF01070 FMN-dependent dehydrogenase ALFP_1000 PF13409 Glutathione S-transferase, N-terminal domain ALFP_1001 PF03358 NADPH-dependent FMN reductase ALFP_1004 PF02245 Methylpurine-DNA glycosylase (MPG) ALFP_1006 PF04241 Protein of unknown function (DUF423) ALFP_1007 PF01544 CorA-like Mg2+ transporter protein ALFP_1008 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_1008 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_1008 PF18158 Adaptive response protein AidB N-terminal domain ALFP_1011 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1012 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1012 PF12911 N-terminal TM domain of oligopeptide transport permease C ALFP_1013 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALFP_1013 PF00005 ABC transporter ALFP_1015 PF01590 GAF domain ALFP_1015 PF02954 Bacterial regulatory protein, Fis family ALFP_1015 PF00158 Sigma-54 interaction domain ALFP_1017 PF00171 Aldehyde dehydrogenase family ALFP_1018 PF00465 Iron-containing alcohol dehydrogenase ALFP_1019 PF01132 Elongation factor P (EF-P) OB domain ALFP_1019 PF09285 Elongation factor P, C-terminal ALFP_1019 PF08207 Elongation factor P (EF-P) KOW-like domain ALFP_1022 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_1022 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_1024 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_1026 PF11791 Aconitate B N-terminal domain ALFP_1026 PF06434 Aconitate hydratase 2 N-terminus ALFP_1026 PF00330 Aconitase family (aconitate hydratase) ALFP_1029 PF00285 Citrate synthase, C-terminal domain ALFP_1031 PF06506 Propionate catabolism activator ALFP_1031 PF02954 Bacterial regulatory protein, Fis family ALFP_1031 PF00158 Sigma-54 interaction domain ALFP_1032 PF07690 Major Facilitator Superfamily ALFP_1034 PF00056 lactate/malate dehydrogenase, NAD binding domain ALFP_1034 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ALFP_1035 PF00392 Bacterial regulatory proteins, gntR family ALFP_1035 PF07702 UTRA domain ALFP_1036 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ALFP_1038 PF02910 Fumarate reductase flavoprotein C-term ALFP_1038 PF00890 FAD binding domain ALFP_1039 PF13085 2Fe-2S iron-sulfur cluster binding domain ALFP_1040 PF03937 Flavinator of succinate dehydrogenase ALFP_1041 PF00285 Citrate synthase, C-terminal domain ALFP_1042 PF07729 FCD domain ALFP_1042 PF00392 Bacterial regulatory proteins, gntR family ALFP_1043 PF02652 L-lactate permease ALFP_1044 PF01515 Phosphate acetyl/butaryl transferase ALFP_1044 PF03949 Malic enzyme, NAD binding domain ALFP_1044 PF00390 Malic enzyme, N-terminal domain ALFP_1046 PF16078 2-oxoglutarate dehydrogenase N-terminus ALFP_1046 PF16870 2-oxoglutarate dehydrogenase C-terminal ALFP_1046 PF02779 Transketolase, pyrimidine binding domain ALFP_1046 PF00676 Dehydrogenase E1 component ALFP_1047 PF00364 Biotin-requiring enzyme ALFP_1047 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALFP_1047 PF02817 e3 binding domain ALFP_1048 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_1048 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALFP_1049 PF03969 AFG1-like ATPase ALFP_1050 PF00579 tRNA synthetases class I (W and Y) ALFP_1051 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_1053 PF00575 S1 RNA binding domain ALFP_1053 PF16921 Tex protein YqgF-like domain ALFP_1053 PF09371 Tex-like protein N-terminal domain ALFP_1053 PF17674 HHH domain ALFP_1054 PF04851 Type III restriction enzyme, res subunit ALFP_1054 PF13307 Helicase C-terminal domain ALFP_1056 PF01638 HxlR-like helix-turn-helix ALFP_1058 PF06249 Ethanolamine utilisation protein EutQ ALFP_1059 PF01266 FAD dependent oxidoreductase ALFP_1059 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ALFP_1062 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_1063 PF08361 MAATS-type transcriptional repressor, C-terminal region ALFP_1063 PF00440 Bacterial regulatory proteins, tetR family ALFP_1064 PF13525 Outer membrane lipoprotein ALFP_1065 PF00849 RNA pseudouridylate synthase ALFP_1065 PF01479 S4 domain ALFP_1067 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus ALFP_1068 PF00106 short chain dehydrogenase ALFP_1069 PF07879 PHB/PHA accumulation regulator DNA-binding domain ALFP_1069 PF05233 PHB accumulation regulatory domain ALFP_1072 PF04079 Segregation and condensation complex subunit ScpB ALFP_1073 PF01479 S4 domain ALFP_1073 PF00849 RNA pseudouridylate synthase ALFP_1074 PF17384 RimP C-terminal SH3 domain ALFP_1074 PF02576 RimP N-terminal domain ALFP_1075 PF13184 NusA-like KH domain ALFP_1075 PF08529 NusA N-terminal domain ALFP_1076 PF00009 Elongation factor Tu GTP binding domain ALFP_1076 PF08364 Bacterial translation initiation factor IF-2 associated region ALFP_1076 PF04760 Translation initiation factor IF-2, N-terminal region ALFP_1076 PF11987 Translation-initiation factor 2 ALFP_1077 PF02033 Ribosome-binding factor A ALFP_1078 PF01509 TruB family pseudouridylate synthase (N terminal domain) ALFP_1078 PF16198 tRNA pseudouridylate synthase B C-terminal domain ALFP_1080 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_1082 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1083 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1084 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_1085 PF03641 Possible lysine decarboxylase ALFP_1086 PF01367 5'-3' exonuclease, C-terminal SAM fold ALFP_1086 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ALFP_1086 PF00476 DNA polymerase family A ALFP_1086 PF01612 3'-5' exonuclease ALFP_1087 PF02690 Na+/Pi-cotransporter ALFP_1089 PF00456 Transketolase, thiamine diphosphate binding domain ALFP_1089 PF17831 Pyruvate dehydrogenase E1 component middle domain ALFP_1091 PF00583 Acetyltransferase (GNAT) family ALFP_1092 PF01435 Peptidase family M48 ALFP_1095 PF00581 Rhodanese-like domain ALFP_1096 PF02609 Exonuclease VII small subunit ALFP_1097 PF00348 Polyprenyl synthetase ALFP_1098 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ALFP_1098 PF02779 Transketolase, pyrimidine binding domain ALFP_1098 PF02780 Transketolase, C-terminal domain ALFP_1099 PF02649 Type I GTP cyclohydrolase folE2 ALFP_1100 PF01250 Ribosomal protein S6 ALFP_1102 PF01084 Ribosomal protein S18 ALFP_1103 PF03948 Ribosomal protein L9, C-terminal domain ALFP_1103 PF01281 Ribosomal protein L9, N-terminal domain ALFP_1104 PF00772 DnaB-like helicase N terminal domain ALFP_1104 PF03796 DnaB-like helicase C terminal domain ALFP_1105 PF13593 SBF-like CPA transporter family (DUF4137) ALFP_1106 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ALFP_1107 PF13638 PIN domain ALFP_1107 PF02562 PhoH-like protein ALFP_1108 PF00578 AhpC/TSA family ALFP_1109 PF04430 Protein of unknown function (DUF498/DUF598) ALFP_1110 PF00155 Aminotransferase class I and II ALFP_1111 PF03447 Homoserine dehydrogenase, NAD binding domain ALFP_1111 PF01842 ACT domain ALFP_1111 PF00742 Homoserine dehydrogenase ALFP_1112 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_1112 PF14821 Threonine synthase N terminus ALFP_1113 PF13302 Acetyltransferase (GNAT) domain ALFP_1114 PF01593 Flavin containing amine oxidoreductase ALFP_1117 PF00842 Alanine racemase, C-terminal domain ALFP_1117 PF01168 Alanine racemase, N-terminal domain ALFP_1119 PF18073 Rubredoxin metal binding domain ALFP_1122 PF13416 Bacterial extracellular solute-binding protein ALFP_1123 PF08402 TOBE domain ALFP_1123 PF00005 ABC transporter ALFP_1124 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1125 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1126 PF03960 ArsC family ALFP_1127 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ALFP_1128 PF01895 PhoU domain ALFP_1129 PF00360 Phytochrome region ALFP_1129 PF00990 Diguanylate cyclase, GGDEF domain ALFP_1129 PF01590 GAF domain ALFP_1129 PF00563 EAL domain ALFP_1130 PF01740 STAS domain ALFP_1130 PF00916 Sulfate permease family ALFP_1131 PF04362 Bacterial Fe(2+) trafficking ALFP_1133 PF00583 Acetyltransferase (GNAT) family ALFP_1133 PF00696 Amino acid kinase family ALFP_1134 PF04408 Helicase associated domain (HA2) ALFP_1134 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ALFP_1134 PF00270 DEAD/DEAH box helicase ALFP_1134 PF00271 Helicase conserved C-terminal domain ALFP_1134 PF11898 Domain of unknown function (DUF3418) ALFP_1135 PF14579 Helix-hairpin-helix motif ALFP_1135 PF02811 PHP domain ALFP_1135 PF01336 OB-fold nucleic acid binding domain ALFP_1135 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALFP_1135 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALFP_1136 PF00534 Glycosyl transferases group 1 ALFP_1136 PF13439 Glycosyltransferase Family 4 ALFP_1137 PF01522 Polysaccharide deacetylase ALFP_1138 PF00535 Glycosyl transferase family 2 ALFP_1140 PF13439 Glycosyltransferase Family 4 ALFP_1140 PF00534 Glycosyl transferases group 1 ALFP_1143 PF03692 Putative zinc- or iron-chelating domain ALFP_1146 PF00005 ABC transporter ALFP_1146 PF00664 ABC transporter transmembrane region ALFP_1149 PF10150 Ribonuclease E/G family ALFP_1149 PF00575 S1 RNA binding domain ALFP_1151 PF07729 FCD domain ALFP_1151 PF00392 Bacterial regulatory proteins, gntR family ALFP_1152 PF01565 FAD binding domain ALFP_1152 PF02913 FAD linked oxidases, C-terminal domain ALFP_1153 PF01565 FAD binding domain ALFP_1154 PF02754 Cysteine-rich domain ALFP_1154 PF13183 4Fe-4S dicluster domain ALFP_1159 PF02690 Na+/Pi-cotransporter ALFP_1161 PF13609 Gram-negative porin ALFP_1162 PF00892 EamA-like transporter family ALFP_1164 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1164 PF03466 LysR substrate binding domain ALFP_1165 PF03601 Conserved hypothetical protein 698 ALFP_1166 PF04247 Invasion gene expression up-regulator, SirB ALFP_1167 PF00753 Metallo-beta-lactamase superfamily ALFP_1169 PF04143 Sulphur transport ALFP_1171 PF13411 MerR HTH family regulatory protein ALFP_1173 PF00403 Heavy-metal-associated domain ALFP_1174 PF00916 Sulfate permease family ALFP_1174 PF01740 STAS domain ALFP_1175 PF03781 Sulfatase-modifying factor enzyme 1 ALFP_1176 PF00884 Sulfatase ALFP_1177 PF05154 TM2 domain ALFP_1178 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ALFP_1178 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ALFP_1179 PF01266 FAD dependent oxidoreductase ALFP_1179 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ALFP_1180 PF00877 NlpC/P60 family ALFP_1181 PF05247 Flagellar transcriptional activator (FlhD) ALFP_1182 PF05280 Flagellar transcriptional activator (FlhC) ALFP_1183 PF01618 MotA/TolQ/ExbB proton channel family ALFP_1184 PF00691 OmpA family ALFP_1184 PF13677 Membrane MotB of proton-channel complex MotA/MotB ALFP_1185 PF01584 CheW-like domain ALFP_1185 PF02895 Signal transducing histidine kinase, homodimeric domain ALFP_1185 PF09078 CheY binding ALFP_1185 PF01627 Hpt domain ALFP_1185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_1186 PF01584 CheW-like domain ALFP_1187 PF02203 Tar ligand binding domain homologue ALFP_1187 PF00672 HAMP domain ALFP_1187 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_1188 PF01739 CheR methyltransferase, SAM binding domain ALFP_1188 PF03705 CheR methyltransferase, all-alpha domain ALFP_1189 PF01339 CheB methylesterase ALFP_1189 PF00072 Response regulator receiver domain ALFP_1190 PF00072 Response regulator receiver domain ALFP_1191 PF04344 Chemotaxis phosphatase, CheZ ALFP_1192 PF01312 FlhB HrpN YscU SpaS Family ALFP_1193 PF00771 FHIPEP family ALFP_1194 PF00448 SRP54-type protein, GTPase domain ALFP_1195 PF13657 HipA N-terminal domain ALFP_1195 PF07804 HipA-like C-terminal domain ALFP_1199 PF04316 Anti-sigma-28 factor, FlgM ALFP_1201 PF00460 Flagella basal body rod protein ALFP_1202 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALFP_1202 PF00460 Flagella basal body rod protein ALFP_1203 PF13861 FlgD Tudor-like domain ALFP_1203 PF03963 Flagellar hook capping protein - N-terminal region ALFP_1203 PF13860 FlgD Ig-like domain ALFP_1204 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALFP_1204 PF00460 Flagella basal body rod protein ALFP_1204 PF07559 Flagellar basal body protein FlaE ALFP_1205 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALFP_1205 PF00460 Flagella basal body rod protein ALFP_1206 PF00460 Flagella basal body rod protein ALFP_1206 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALFP_1207 PF02107 Flagellar L-ring protein ALFP_1208 PF02119 Flagellar P-ring protein ALFP_1209 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ALFP_1209 PF10135 Rod binding protein ALFP_1210 PF00460 Flagella basal body rod protein ALFP_1210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALFP_1211 PF00669 Bacterial flagellin N-terminal helical region ALFP_1212 PF02203 Tar ligand binding domain homologue ALFP_1212 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_1212 PF00672 HAMP domain ALFP_1214 PF00672 HAMP domain ALFP_1214 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_1214 PF02203 Tar ligand binding domain homologue ALFP_1216 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALFP_1216 PF00929 Exonuclease ALFP_1216 PF02811 PHP domain ALFP_1216 PF14579 Helix-hairpin-helix motif ALFP_1216 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALFP_1217 PF01311 Bacterial export proteins, family 1 ALFP_1218 PF01313 Bacterial export proteins, family 3 ALFP_1219 PF00813 FliP family ALFP_1220 PF04347 Flagellar biosynthesis protein, FliO ALFP_1221 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ALFP_1221 PF16973 Flagellar motor switch protein FliN N-terminal ALFP_1222 PF02154 Flagellar motor switch protein FliM ALFP_1222 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ALFP_1223 PF03748 Flagellar basal body-associated protein FliL ALFP_1226 PF18269 T3SS EscN ATPase C-terminal domain ALFP_1226 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALFP_1228 PF14842 FliG N-terminal domain ALFP_1228 PF14841 FliG middle domain ALFP_1228 PF01706 FliG C-terminal domain ALFP_1229 PF08345 Flagellar M-ring protein C-terminal ALFP_1229 PF01514 Secretory protein of YscJ/FliF family ALFP_1230 PF02049 Flagellar hook-basal body complex protein FliE ALFP_1231 PF01312 FlhB HrpN YscU SpaS Family ALFP_1234 PF02561 Flagellar protein FliS ALFP_1235 PF02465 Flagellar hook-associated protein 2 N-terminus ALFP_1235 PF07195 Flagellar hook-associated protein 2 C-terminus ALFP_1235 PF07196 Flagellin hook IN motif ALFP_1236 PF03646 FlaG protein ALFP_1237 PF04545 Sigma-70, region 4 ALFP_1237 PF04539 Sigma-70 region 3 ALFP_1237 PF04542 Sigma-70 region 2 ALFP_1240 PF00669 Bacterial flagellin N-terminal helical region ALFP_1240 PF08884 Flagellin D3 domain ALFP_1240 PF00700 Bacterial flagellin C-terminal helical region ALFP_1247 PF00005 ABC transporter ALFP_1249 PF03781 Sulfatase-modifying factor enzyme 1 ALFP_1253 PF04286 Protein of unknown function (DUF445) ALFP_1254 PF08447 PAS fold ALFP_1254 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_1255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_1255 PF08447 PAS fold ALFP_1257 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ALFP_1257 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ALFP_1258 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_1262 PF00589 Phage integrase family ALFP_1263 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_1264 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_1265 PF00884 Sulfatase ALFP_1266 PF03466 LysR substrate binding domain ALFP_1266 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1267 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALFP_1268 PF00873 AcrB/AcrD/AcrF family ALFP_1269 PF02321 Outer membrane efflux protein ALFP_1270 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ALFP_1271 PF00005 ABC transporter ALFP_1272 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1274 PF03466 LysR substrate binding domain ALFP_1274 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1276 PF01425 Amidase ALFP_1279 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_1280 PF03831 PhnA domain ALFP_1280 PF08274 PhnA Zinc-Ribbon ALFP_1282 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_1284 PF00324 Amino acid permease ALFP_1288 PF03466 LysR substrate binding domain ALFP_1288 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1289 PF07007 Lysozyme inhibitor LprI ALFP_1290 PF00230 Major intrinsic protein ALFP_1297 PF10518 TAT (twin-arginine translocation) pathway signal sequence ALFP_1297 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_1297 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding ALFP_1302 PF00313 'Cold-shock' DNA-binding domain ALFP_1303 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_1303 PF00512 His Kinase A (phospho-acceptor) domain ALFP_1303 PF08521 Two-component sensor kinase N-terminal ALFP_1304 PF00486 Transcriptional regulatory protein, C terminal ALFP_1304 PF00072 Response regulator receiver domain ALFP_1305 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_1307 PF00034 Cytochrome c ALFP_1308 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_1310 PF01548 Transposase ALFP_1310 PF02371 Transposase IS116/IS110/IS902 family ALFP_1313 PF00149 Calcineurin-like phosphoesterase ALFP_1314 PF07715 TonB-dependent Receptor Plug Domain ALFP_1314 PF00593 TonB dependent receptor ALFP_1319 PF01914 MarC family integral membrane protein ALFP_1321 PF00999 Sodium/hydrogen exchanger family ALFP_1323 PF00529 HlyD membrane-fusion protein of T1SS ALFP_1323 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALFP_1324 PF12805 FUSC-like inner membrane protein yccS ALFP_1326 PF00860 Permease family ALFP_1330 PF02630 SCO1/SenC ALFP_1332 PF01645 Conserved region in glutamate synthase ALFP_1334 PF12802 MarR family ALFP_1335 PF02464 Competence-damaged protein ALFP_1335 PF00994 Probable molybdopterin binding domain ALFP_1336 PF00330 Aconitase family (aconitate hydratase) ALFP_1336 PF00694 Aconitase C-terminal domain ALFP_1338 PF04303 PrpF protein ALFP_1339 PF12833 Helix-turn-helix domain ALFP_1341 PF00355 Rieske [2Fe-2S] domain ALFP_1341 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_1342 PF00866 Ring hydroxylating beta subunit ALFP_1346 PF00924 Mechanosensitive ion channel ALFP_1346 PF12795 Mechanosensitive ion channel porin domain ALFP_1346 PF12794 Mechanosensitive ion channel inner membrane domain 1 ALFP_1347 PF00924 Mechanosensitive ion channel ALFP_1347 PF12795 Mechanosensitive ion channel porin domain ALFP_1347 PF12794 Mechanosensitive ion channel inner membrane domain 1 ALFP_1348 PF00083 Sugar (and other) transporter ALFP_1348 PF08946 Osmosensory transporter coiled coil ALFP_1351 PF01381 Helix-turn-helix ALFP_1352 PF00072 Response regulator receiver domain ALFP_1353 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_1353 PF01627 Hpt domain ALFP_1353 PF00072 Response regulator receiver domain ALFP_1353 PF00512 His Kinase A (phospho-acceptor) domain ALFP_1354 PF03448 MgtE intracellular N domain ALFP_1354 PF01769 Divalent cation transporter ALFP_1354 PF00571 CBS domain ALFP_1357 PF06965 Na+/H+ antiporter 1 ALFP_1358 PF02580 D-Tyr-tRNA(Tyr) deacylase ALFP_1359 PF00893 Small Multidrug Resistance protein ALFP_1361 PF00583 Acetyltransferase (GNAT) family ALFP_1364 PF01435 Peptidase family M48 ALFP_1365 PF07690 Major Facilitator Superfamily ALFP_1375 PF00990 Diguanylate cyclase, GGDEF domain ALFP_1378 PF13404 AsnC-type helix-turn-helix domain ALFP_1378 PF01037 Lrp/AsnC ligand binding domain ALFP_1379 PF01053 Cys/Met metabolism PLP-dependent enzyme ALFP_1381 PF00293 NUDIX domain ALFP_1382 PF04304 Protein of unknown function (DUF454) ALFP_1384 PF00764 Arginosuccinate synthase ALFP_1385 PF00149 Calcineurin-like phosphoesterase ALFP_1386 PF03459 TOBE domain ALFP_1386 PF00005 ABC transporter ALFP_1387 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1389 PF01547 Bacterial extracellular solute-binding protein ALFP_1390 PF00356 Bacterial regulatory proteins, lacI family ALFP_1393 PF03814 Potassium-transporting ATPase A subunit ALFP_1394 PF02669 K+-transporting ATPase, c chain ALFP_1396 PF13492 GAF domain ALFP_1396 PF13493 Domain of unknown function (DUF4118) ALFP_1396 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_1396 PF00512 His Kinase A (phospho-acceptor) domain ALFP_1396 PF02702 Osmosensitive K+ channel His kinase sensor domain ALFP_1397 PF00486 Transcriptional regulatory protein, C terminal ALFP_1397 PF00072 Response regulator receiver domain ALFP_1398 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ALFP_1398 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ALFP_1400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_1400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALFP_1401 PF01649 Ribosomal protein S20 ALFP_1402 PF03023 Lipid II flippase MurJ ALFP_1403 PF00106 short chain dehydrogenase ALFP_1404 PF05191 Adenylate kinase, active site lid ALFP_1405 PF02348 Cytidylyltransferase ALFP_1406 PF03966 Trm112p-like protein ALFP_1407 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ALFP_1408 PF02472 Biopolymer transport protein ExbD/TolR ALFP_1409 PF01618 MotA/TolQ/ExbB proton channel family ALFP_1410 PF13742 OB-fold nucleic acid binding domain ALFP_1410 PF02601 Exonuclease VII, large subunit ALFP_1411 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ALFP_1411 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ALFP_1412 PF00210 Ferritin-like domain ALFP_1413 PF02803 Thiolase, C-terminal domain ALFP_1413 PF00108 Thiolase, N-terminal domain ALFP_1415 PF00313 'Cold-shock' DNA-binding domain ALFP_1416 PF02617 ATP-dependent Clp protease adaptor protein ClpS ALFP_1417 PF02861 Clp amino terminal domain, pathogenicity island component ALFP_1417 PF07724 AAA domain (Cdc48 subfamily) ALFP_1417 PF17871 AAA lid domain ALFP_1417 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_1417 PF10431 C-terminal, D2-small domain, of ClpB protein ALFP_1418 PF04403 Paraquat-inducible protein A ALFP_1420 PF02470 MlaD protein ALFP_1422 PF14850 DNA-binding domain of Proline dehydrogenase ALFP_1422 PF00171 Aldehyde dehydrogenase family ALFP_1422 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ALFP_1422 PF01619 Proline dehydrogenase ALFP_1423 PF13458 Periplasmic binding protein ALFP_1424 PF02653 Branched-chain amino acid transport system / permease component ALFP_1425 PF02653 Branched-chain amino acid transport system / permease component ALFP_1425 PF11862 Domain of unknown function (DUF3382) ALFP_1426 PF00005 ABC transporter ALFP_1426 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_1427 PF00005 ABC transporter ALFP_1432 PF05971 RNA methyltransferase ALFP_1433 PF00692 dUTPase ALFP_1434 PF02441 Flavoprotein ALFP_1434 PF04127 DNA / pantothenate metabolism flavoprotein ALFP_1435 PF01252 Signal peptidase (SPase) II ALFP_1436 PF08264 Anticodon-binding domain of tRNA ALFP_1436 PF00133 tRNA synthetases class I (I, L, M and V) ALFP_1436 PF06827 Zinc finger found in FPG and IleRS ALFP_1437 PF06574 FAD synthetase ALFP_1437 PF01687 Riboflavin kinase ALFP_1438 PF00551 Formyl transferase ALFP_1439 PF01189 16S rRNA methyltransferase RsmB/F ALFP_1439 PF01029 NusB family ALFP_1441 PF00580 UvrD/REP helicase N-terminal domain ALFP_1441 PF13361 UvrD-like helicase C-terminal domain ALFP_1446 PF02909 Tetracyclin repressor-like, C-terminal domain ALFP_1446 PF00440 Bacterial regulatory proteins, tetR family ALFP_1447 PF13533 Biotin-lipoyl like ALFP_1450 PF07690 Major Facilitator Superfamily ALFP_1452 PF00005 ABC transporter ALFP_1452 PF12848 ABC transporter ALFP_1453 PF05175 Methyltransferase small domain ALFP_1454 PF07687 Peptidase dimerisation domain ALFP_1454 PF01546 Peptidase family M20/M25/M40 ALFP_1455 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ALFP_1455 PF14602 Hexapeptide repeat of succinyl-transferase ALFP_1455 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_1457 PF02311 AraC-like ligand binding domain ALFP_1457 PF12833 Helix-turn-helix domain ALFP_1459 PF02080 TrkA-C domain ALFP_1459 PF03600 Citrate transporter ALFP_1468 PF00376 MerR family regulatory protein ALFP_1468 PF09278 MerR, DNA binding ALFP_1469 PF07690 Major Facilitator Superfamily ALFP_1470 PF02515 CoA-transferase family III ALFP_1471 PF05698 Bacterial trigger factor protein (TF) C-terminus ALFP_1471 PF05697 Bacterial trigger factor protein (TF) ALFP_1471 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALFP_1472 PF00574 Clp protease ALFP_1473 PF07724 AAA domain (Cdc48 subfamily) ALFP_1473 PF10431 C-terminal, D2-small domain, of ClpB protein ALFP_1473 PF06689 ClpX C4-type zinc finger ALFP_1474 PF05362 Lon protease (S16) C-terminal proteolytic domain ALFP_1474 PF02190 ATP-dependent protease La (LON) substrate-binding domain ALFP_1474 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_1476 PF01726 LexA DNA binding domain ALFP_1476 PF00717 Peptidase S24-like ALFP_1477 PF13302 Acetyltransferase (GNAT) domain ALFP_1478 PF00155 Aminotransferase class I and II ALFP_1479 PF17757 UvrB interaction domain ALFP_1479 PF04851 Type III restriction enzyme, res subunit ALFP_1479 PF00271 Helicase conserved C-terminal domain ALFP_1479 PF12344 Ultra-violet resistance protein B ALFP_1479 PF02151 UvrB/uvrC motif ALFP_1480 PF01451 Low molecular weight phosphotyrosine protein phosphatase ALFP_1483 PF00266 Aminotransferase class-V ALFP_1484 PF01592 NifU-like N terminal domain ALFP_1485 PF01521 Iron-sulphur cluster biosynthesis ALFP_1486 PF02142 MGS-like domain ALFP_1488 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_1489 PF00152 tRNA synthetases class II (D, K and N) ALFP_1489 PF01336 OB-fold nucleic acid binding domain ALFP_1490 PF00106 short chain dehydrogenase ALFP_1491 PF00472 RF-1 domain ALFP_1491 PF03462 PCRF domain ALFP_1492 PF00672 HAMP domain ALFP_1492 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_1492 PF02203 Tar ligand binding domain homologue ALFP_1493 PF01176 Translation initiation factor 1A / IF-1 ALFP_1494 PF00892 EamA-like transporter family ALFP_1495 PF01758 Sodium Bile acid symporter family ALFP_1497 PF01368 DHH family ALFP_1497 PF17768 RecJ OB domain ALFP_1497 PF02272 DHHA1 domain ALFP_1499 PF02687 FtsX-like permease family ALFP_1499 PF12704 MacB-like periplasmic core domain ALFP_1500 PF00005 ABC transporter ALFP_1501 PF01026 TatD related DNase ALFP_1502 PF00753 Metallo-beta-lactamase superfamily ALFP_1502 PF03772 Competence protein ALFP_1503 PF12697 Alpha/beta hydrolase family ALFP_1504 PF02811 PHP domain ALFP_1505 PF03449 Transcription elongation factor, N-terminal ALFP_1505 PF01272 Transcription elongation factor, GreA/GreB, C-term ALFP_1506 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ALFP_1506 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ALFP_1506 PF02769 AIR synthase related protein, C-terminal domain ALFP_1507 PF00571 CBS domain ALFP_1507 PF00478 IMP dehydrogenase / GMP reductase domain ALFP_1512 PF02540 NAD synthase ALFP_1512 PF00958 GMP synthase C terminal domain ALFP_1512 PF00117 Glutamine amidotransferase class-I ALFP_1513 PF01527 Transposase ALFP_1514 PF13276 HTH-like domain ALFP_1514 PF00665 Integrase core domain ALFP_1514 PF13333 Integrase core domain ALFP_1521 PF13677 Membrane MotB of proton-channel complex MotA/MotB ALFP_1521 PF00691 OmpA family ALFP_1527 PF00893 Small Multidrug Resistance protein ALFP_1529 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1529 PF03466 LysR substrate binding domain ALFP_1530 PF08267 Cobalamin-independent synthase, N-terminal domain ALFP_1530 PF01717 Cobalamin-independent synthase, Catalytic domain ALFP_1532 PF01717 Cobalamin-independent synthase, Catalytic domain ALFP_1534 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_1534 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_1534 PF18158 Adaptive response protein AidB N-terminal domain ALFP_1537 PF13280 WYL domain ALFP_1537 PF08279 HTH domain ALFP_1538 PF02492 CobW/HypB/UreG, nucleotide-binding domain ALFP_1538 PF07683 Cobalamin synthesis protein cobW C-terminal domain ALFP_1539 PF02649 Type I GTP cyclohydrolase folE2 ALFP_1542 PF01979 Amidohydrolase family ALFP_1543 PF01475 Ferric uptake regulator family ALFP_1544 PF01502 Phosphoribosyl-AMP cyclohydrolase ALFP_1545 PF01970 Tripartite tricarboxylate transporter TctA family ALFP_1547 PF00072 Response regulator receiver domain ALFP_1547 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_1547 PF13426 PAS domain ALFP_1547 PF08448 PAS fold ALFP_1547 PF00512 His Kinase A (phospho-acceptor) domain ALFP_1548 PF00486 Transcriptional regulatory protein, C terminal ALFP_1548 PF00072 Response regulator receiver domain ALFP_1549 PF08543 Phosphomethylpyrimidine kinase ALFP_1551 PF03466 LysR substrate binding domain ALFP_1551 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1552 PF04632 Fusaric acid resistance protein family ALFP_1554 PF13533 Biotin-lipoyl like ALFP_1556 PF14552 Tautomerase enzyme ALFP_1557 PF00042 Globin ALFP_1557 PF00175 Oxidoreductase NAD-binding domain ALFP_1557 PF00970 Oxidoreductase FAD-binding domain ALFP_1558 PF00171 Aldehyde dehydrogenase family ALFP_1559 PF04341 Protein of unknown function, DUF485 ALFP_1560 PF00474 Sodium:solute symporter family ALFP_1562 PF03060 Nitronate monooxygenase ALFP_1563 PF03466 LysR substrate binding domain ALFP_1563 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1568 PF16859 Tetracyclin repressor-like, C-terminal domain ALFP_1568 PF00440 Bacterial regulatory proteins, tetR family ALFP_1569 PF03033 Glycosyltransferase family 28 N-terminal domain ALFP_1571 PF02798 Glutathione S-transferase, N-terminal domain ALFP_1572 PF03466 LysR substrate binding domain ALFP_1572 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1576 PF02798 Glutathione S-transferase, N-terminal domain ALFP_1577 PF00574 Clp protease ALFP_1582 PF00891 O-methyltransferase domain ALFP_1584 PF00581 Rhodanese-like domain ALFP_1584 PF00899 ThiF family ALFP_1585 PF14464 Prokaryotic homologs of the JAB domain ALFP_1586 PF02597 ThiS family ALFP_1587 PF02515 CoA-transferase family III ALFP_1588 PF00501 AMP-binding enzyme ALFP_1588 PF13193 AMP-binding enzyme C-terminal domain ALFP_1589 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_1589 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_1589 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_1593 PF02627 Carboxymuconolactone decarboxylase family ALFP_1594 PF01022 Bacterial regulatory protein, arsR family ALFP_1598 PF02311 AraC-like ligand binding domain ALFP_1598 PF12833 Helix-turn-helix domain ALFP_1599 PF08502 LeuA allosteric (dimerisation) domain ALFP_1599 PF00682 HMGL-like ALFP_1602 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1602 PF03466 LysR substrate binding domain ALFP_1603 PF13378 Enolase C-terminal domain-like ALFP_1603 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ALFP_1604 PF00775 Dioxygenase ALFP_1604 PF04444 Catechol dioxygenase N terminus ALFP_1605 PF01144 Coenzyme A transferase ALFP_1606 PF01144 Coenzyme A transferase ALFP_1607 PF12146 Serine aminopeptidase, S33 ALFP_1608 PF02426 Muconolactone delta-isomerase ALFP_1609 PF03594 Benzoate membrane transport protein ALFP_1610 PF01926 50S ribosome-binding GTPase ALFP_1611 PF01926 50S ribosome-binding GTPase ALFP_1612 PF02535 ZIP Zinc transporter ALFP_1613 PF00005 ABC transporter ALFP_1614 PF00850 Histone deacetylase domain ALFP_1615 PF00072 Response regulator receiver domain ALFP_1615 PF00196 Bacterial regulatory proteins, luxR family ALFP_1616 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ALFP_1616 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ALFP_1622 PF12802 MarR family ALFP_1623 PF01494 FAD binding domain ALFP_1624 PF07690 Major Facilitator Superfamily ALFP_1626 PF01168 Alanine racemase, N-terminal domain ALFP_1627 PF00392 Bacterial regulatory proteins, gntR family ALFP_1627 PF00155 Aminotransferase class I and II ALFP_1628 PF00892 EamA-like transporter family ALFP_1630 PF08774 VRR-NUC domain ALFP_1630 PF18081 Fanconi anemia-associated nuclease SAP domain ALFP_1633 PF00890 FAD binding domain ALFP_1634 PF02445 Quinolinate synthetase A protein ALFP_1635 PF00248 Aldo/keto reductase family ALFP_1640 PF12833 Helix-turn-helix domain ALFP_1640 PF02311 AraC-like ligand binding domain ALFP_1642 PF12706 Beta-lactamase superfamily domain ALFP_1643 PF00857 Isochorismatase family ALFP_1645 PF02586 SOS response associated peptidase (SRAP) ALFP_1649 PF03006 Haemolysin-III related ALFP_1650 PF07411 Domain of unknown function (DUF1508) ALFP_1655 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1656 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1657 PF00005 ABC transporter ALFP_1662 PF02830 V4R domain ALFP_1662 PF06505 Activator of aromatic catabolism ALFP_1662 PF02954 Bacterial regulatory protein, Fis family ALFP_1662 PF00158 Sigma-54 interaction domain ALFP_1663 PF06099 Phenol hydroxylase subunit ALFP_1664 PF02332 Methane/Phenol/Toluene Hydroxylase ALFP_1665 PF02406 MmoB/DmpM family ALFP_1666 PF02332 Methane/Phenol/Toluene Hydroxylase ALFP_1666 PF04945 YHS domain ALFP_1667 PF04663 Phenol hydroxylase conserved region ALFP_1668 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_1668 PF00970 Oxidoreductase FAD-binding domain ALFP_1668 PF00175 Oxidoreductase NAD-binding domain ALFP_1669 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1669 PF03466 LysR substrate binding domain ALFP_1670 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_1670 PF00355 Rieske [2Fe-2S] domain ALFP_1671 PF00866 Ring hydroxylating beta subunit ALFP_1672 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_1672 PF00970 Oxidoreductase FAD-binding domain ALFP_1672 PF00175 Oxidoreductase NAD-binding domain ALFP_1673 PF00106 short chain dehydrogenase ALFP_1674 PF07690 Major Facilitator Superfamily ALFP_1675 PF01810 LysE type translocator ALFP_1678 PF00356 Bacterial regulatory proteins, lacI family ALFP_1680 PF01979 Amidohydrolase family ALFP_1681 PF00860 Permease family ALFP_1685 PF16200 C-terminal region of band_7 ALFP_1685 PF01145 SPFH domain / Band 7 family ALFP_1686 PF01957 NfeD-like C-terminal, partner-binding ALFP_1687 PF13649 Methyltransferase domain ALFP_1689 PF03891 Domain of unknown function (DUF333) ALFP_1691 PF00294 pfkB family carbohydrate kinase ALFP_1696 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALFP_1696 PF02824 TGS domain ALFP_1696 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALFP_1696 PF03129 Anticodon binding domain ALFP_1697 PF00707 Translation initiation factor IF-3, C-terminal domain ALFP_1697 PF05198 Translation initiation factor IF-3, N-terminal domain ALFP_1698 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ALFP_1698 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ALFP_1700 PF00381 PTS HPr component phosphorylation site ALFP_1701 PF02896 PEP-utilising enzyme, TIM barrel domain ALFP_1701 PF05524 PEP-utilising enzyme, N-terminal ALFP_1701 PF00391 PEP-utilising enzyme, mobile domain ALFP_1706 PF01078 Magnesium chelatase, subunit ChlI ALFP_1706 PF13335 Magnesium chelatase, subunit ChlI C-terminal ALFP_1707 PF01632 Ribosomal protein L35 ALFP_1708 PF00453 Ribosomal protein L20 ALFP_1709 PF01409 tRNA synthetases class II core domain (F) ALFP_1709 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ALFP_1710 PF01588 Putative tRNA binding domain ALFP_1710 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ALFP_1710 PF03147 Ferredoxin-fold anticodon binding domain ALFP_1710 PF03483 B3/4 domain ALFP_1710 PF03484 tRNA synthetase B5 domain ALFP_1711 PF00216 Bacterial DNA-binding protein ALFP_1713 PF04305 Protein of unknown function (DUF455) ALFP_1715 PF00005 ABC transporter ALFP_1715 PF00664 ABC transporter transmembrane region ALFP_1716 PF02082 Transcriptional regulator ALFP_1717 PF01458 Uncharacterized protein family (UPF0051) ALFP_1718 PF00005 ABC transporter ALFP_1719 PF01458 Uncharacterized protein family (UPF0051) ALFP_1720 PF00266 Aminotransferase class-V ALFP_1721 PF01592 NifU-like N terminal domain ALFP_1722 PF01883 Iron-sulfur cluster assembly protein ALFP_1726 PF02321 Outer membrane efflux protein ALFP_1728 PF00664 ABC transporter transmembrane region ALFP_1728 PF03412 Peptidase C39 family ALFP_1728 PF00005 ABC transporter ALFP_1729 PF00529 HlyD membrane-fusion protein of T1SS ALFP_1733 PF02875 Mur ligase family, glutamate ligase domain ALFP_1733 PF08245 Mur ligase middle domain ALFP_1733 PF01225 Mur ligase family, catalytic domain ALFP_1734 PF08245 Mur ligase middle domain ALFP_1734 PF01225 Mur ligase family, catalytic domain ALFP_1734 PF02875 Mur ligase family, glutamate ligase domain ALFP_1735 PF01820 D-ala D-ala ligase N-terminus ALFP_1735 PF07478 D-ala D-ala ligase C-terminus ALFP_1736 PF01418 Helix-turn-helix domain, rpiR family ALFP_1736 PF01380 SIS domain ALFP_1737 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_1738 PF01546 Peptidase family M20/M25/M40 ALFP_1738 PF07687 Peptidase dimerisation domain ALFP_1739 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALFP_1740 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1741 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1742 PF00005 ABC transporter ALFP_1742 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALFP_1743 PF00795 Carbon-nitrogen hydrolase ALFP_1744 PF07687 Peptidase dimerisation domain ALFP_1744 PF01546 Peptidase family M20/M25/M40 ALFP_1745 PF07364 Metallopeptidase family M81 ALFP_1745 PF07171 MlrC C-terminus ALFP_1751 PF00970 Oxidoreductase FAD-binding domain ALFP_1751 PF00042 Globin ALFP_1751 PF00175 Oxidoreductase NAD-binding domain ALFP_1752 PF02082 Transcriptional regulator ALFP_1753 PF04381 Putative exonuclease, RdgC ALFP_1769 PF03354 Phage Terminase ALFP_1776 PF03592 Terminase small subunit ALFP_1779 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) ALFP_1807 PF02586 SOS response associated peptidase (SRAP) ALFP_1815 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_1816 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_1817 PF00034 Cytochrome c ALFP_1817 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_1818 PF01266 FAD dependent oxidoreductase ALFP_1821 PF03781 Sulfatase-modifying factor enzyme 1 ALFP_1824 PF02386 Cation transport protein ALFP_1825 PF02254 TrkA-N domain ALFP_1825 PF02080 TrkA-C domain ALFP_1826 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALFP_1828 PF09424 Yqey-like protein ALFP_1829 PF02811 PHP domain ALFP_1829 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALFP_1829 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALFP_1829 PF14579 Helix-hairpin-helix motif ALFP_1836 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_1837 PF03466 LysR substrate binding domain ALFP_1837 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1838 PF00768 D-alanyl-D-alanine carboxypeptidase ALFP_1840 PF01618 MotA/TolQ/ExbB proton channel family ALFP_1841 PF00691 OmpA family ALFP_1841 PF13677 Membrane MotB of proton-channel complex MotA/MotB ALFP_1845 PF00106 short chain dehydrogenase ALFP_1846 PF00677 Lumazine binding domain ALFP_1848 PF01568 Molydopterin dinucleotide binding domain ALFP_1848 PF00384 Molybdopterin oxidoreductase ALFP_1848 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALFP_1849 PF03916 Polysulphide reductase, NrfD ALFP_1850 PF13247 4Fe-4S dicluster domain ALFP_1851 PF07715 TonB-dependent Receptor Plug Domain ALFP_1851 PF00593 TonB dependent receptor ALFP_1853 PF03069 Acetamidase/Formamidase family ALFP_1854 PF01979 Amidohydrolase family ALFP_1855 PF00860 Permease family ALFP_1856 PF00011 Hsp20/alpha crystallin family ALFP_1859 PF07690 Major Facilitator Superfamily ALFP_1863 PF01494 FAD binding domain ALFP_1865 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain ALFP_1865 PF00293 NUDIX domain ALFP_1865 PF09297 NADH pyrophosphatase zinc ribbon domain ALFP_1866 PF08340 Domain of unknown function (DUF1732) ALFP_1866 PF03755 YicC-like family, N-terminal region ALFP_1867 PF00149 Calcineurin-like phosphoesterase ALFP_1868 PF13175 AAA ATPase domain ALFP_1869 PF01138 3' exoribonuclease family, domain 1 ALFP_1869 PF03725 3' exoribonuclease family, domain 2 ALFP_1870 PF01725 Ham1 family ALFP_1871 PF06969 HemN C-terminal domain ALFP_1871 PF04055 Radical SAM superfamily ALFP_1873 PF13673 Acetyltransferase (GNAT) domain ALFP_1874 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1874 PF03466 LysR substrate binding domain ALFP_1877 PF08402 TOBE domain ALFP_1877 PF00005 ABC transporter ALFP_1878 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1880 PF00175 Oxidoreductase NAD-binding domain ALFP_1880 PF00970 Oxidoreductase FAD-binding domain ALFP_1881 PF01042 Endoribonuclease L-PSP ALFP_1882 PF00271 Helicase conserved C-terminal domain ALFP_1882 PF17191 RecG wedge domain ALFP_1882 PF00270 DEAD/DEAH box helicase ALFP_1883 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1883 PF03466 LysR substrate binding domain ALFP_1884 PF00210 Ferritin-like domain ALFP_1885 PF13458 Periplasmic binding protein ALFP_1886 PF00005 ABC transporter ALFP_1886 PF17912 MalK OB fold domain ALFP_1887 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1888 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1889 PF13416 Bacterial extracellular solute-binding protein ALFP_1890 PF03807 NADP oxidoreductase coenzyme F420-dependent ALFP_1890 PF14748 Pyrroline-5-carboxylate reductase dimerisation ALFP_1891 PF13458 Periplasmic binding protein ALFP_1892 PF02653 Branched-chain amino acid transport system / permease component ALFP_1893 PF02653 Branched-chain amino acid transport system / permease component ALFP_1893 PF11862 Domain of unknown function (DUF3382) ALFP_1894 PF00005 ABC transporter ALFP_1894 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_1895 PF00005 ABC transporter ALFP_1896 PF02798 Glutathione S-transferase, N-terminal domain ALFP_1896 PF00043 Glutathione S-transferase, C-terminal domain ALFP_1897 PF00326 Prolyl oligopeptidase family ALFP_1898 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALFP_1898 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_1900 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALFP_1900 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALFP_1901 PF00206 Lyase ALFP_1901 PF10415 Fumarase C C-terminus ALFP_1902 PF07995 Glucose / Sorbosone dehydrogenase ALFP_1903 PF08241 Methyltransferase domain ALFP_1904 PF00582 Universal stress protein family ALFP_1905 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_1906 PF12833 Helix-turn-helix domain ALFP_1906 PF02311 AraC-like ligand binding domain ALFP_1907 PF00596 Class II Aldolase and Adducin N-terminal domain ALFP_1909 PF00171 Aldehyde dehydrogenase family ALFP_1910 PF01494 FAD binding domain ALFP_1911 PF07690 Major Facilitator Superfamily ALFP_1913 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1913 PF03466 LysR substrate binding domain ALFP_1915 PF00403 Heavy-metal-associated domain ALFP_1916 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ ALFP_1920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1920 PF03466 LysR substrate binding domain ALFP_1921 PF00589 Phage integrase family ALFP_1921 PF02899 Phage integrase, N-terminal SAM-like domain ALFP_1925 PF00394 Multicopper oxidase ALFP_1925 PF07731 Multicopper oxidase ALFP_1925 PF07732 Multicopper oxidase ALFP_1928 PF03976 Polyphosphate kinase 2 (PPK2) ALFP_1934 PF01292 Prokaryotic cytochrome b561 ALFP_1936 PF04264 YceI-like domain ALFP_1937 PF03960 ArsC family ALFP_1938 PF02798 Glutathione S-transferase, N-terminal domain ALFP_1938 PF00043 Glutathione S-transferase, C-terminal domain ALFP_1940 PF03358 NADPH-dependent FMN reductase ALFP_1942 PF01026 TatD related DNase ALFP_1943 PF09115 DNA polymerase III, delta subunit, C terminal ALFP_1945 PF02618 YceG-like family ALFP_1947 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALFP_1947 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALFP_1949 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_1949 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_1949 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_1950 PF03658 RnfH family Ubiquitin ALFP_1951 PF03364 Polyketide cyclase / dehydrase and lipid transport ALFP_1952 PF01668 SmpB protein ALFP_1953 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_1954 PF00440 Bacterial regulatory proteins, tetR family ALFP_1955 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ALFP_1955 PF00391 PEP-utilising enzyme, mobile domain ALFP_1955 PF02896 PEP-utilising enzyme, TIM barrel domain ALFP_1956 PF03618 Kinase/pyrophosphorylase ALFP_1957 PF01425 Amidase ALFP_1958 PF08032 RNA 2'-O ribose methyltransferase substrate binding ALFP_1958 PF00588 SpoU rRNA Methylase family ALFP_1959 PF01351 Ribonuclease HII ALFP_1960 PF02684 Lipid-A-disaccharide synthetase ALFP_1961 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_1961 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ALFP_1962 PF07977 FabA-like domain ALFP_1963 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ALFP_1963 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_1964 PF03938 Outer membrane protein (OmpH-like) ALFP_1965 PF07244 Surface antigen variable number repeat ALFP_1965 PF01103 Surface antigen ALFP_1966 PF17820 PDZ domain ALFP_1966 PF13180 PDZ domain ALFP_1966 PF02163 Peptidase family M50 ALFP_1967 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ALFP_1967 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ALFP_1967 PF13288 DXP reductoisomerase C-terminal domain ALFP_1969 PF01255 Putative undecaprenyl diphosphate synthase ALFP_1970 PF01765 Ribosome recycling factor ALFP_1971 PF00696 Amino acid kinase family ALFP_1972 PF00889 Elongation factor TS ALFP_1973 PF00318 Ribosomal protein S2 ALFP_1974 PF00557 Metallopeptidase family M24 ALFP_1975 PF01966 HD domain ALFP_1975 PF01909 Nucleotidyltransferase domain ALFP_1975 PF08335 GlnD PII-uridylyltransferase ALFP_1976 PF01914 MarC family integral membrane protein ALFP_1978 PF00144 Beta-lactamase ALFP_1979 PF00156 Phosphoribosyl transferase domain ALFP_1980 PF02674 Colicin V production protein ALFP_1982 PF08245 Mur ligase middle domain ALFP_1982 PF02875 Mur ligase family, glutamate ligase domain ALFP_1983 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_1983 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALFP_1984 PF02817 e3 binding domain ALFP_1984 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALFP_1984 PF00364 Biotin-requiring enzyme ALFP_1985 PF17831 Pyruvate dehydrogenase E1 component middle domain ALFP_1985 PF00456 Transketolase, thiamine diphosphate binding domain ALFP_1986 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_1986 PF00512 His Kinase A (phospho-acceptor) domain ALFP_1986 PF00989 PAS fold ALFP_1987 PF00072 Response regulator receiver domain ALFP_1987 PF00196 Bacterial regulatory proteins, luxR family ALFP_1988 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ALFP_1988 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ALFP_1989 PF01432 Peptidase family M3 ALFP_1990 PF02630 SCO1/SenC ALFP_1991 PF00009 Elongation factor Tu GTP binding domain ALFP_1991 PF03764 Elongation factor G, domain IV ALFP_1991 PF03144 Elongation factor Tu domain 2 ALFP_1991 PF14492 Elongation Factor G, domain II ALFP_1991 PF00679 Elongation factor G C-terminus ALFP_1992 PF01022 Bacterial regulatory protein, arsR family ALFP_1993 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_1993 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALFP_1994 PF09278 MerR, DNA binding ALFP_1994 PF00376 MerR family regulatory protein ALFP_1996 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ALFP_1997 PF02321 Outer membrane efflux protein ALFP_1998 PF00873 AcrB/AcrD/AcrF family ALFP_1999 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALFP_1999 PF00529 HlyD membrane-fusion protein of T1SS ALFP_2000 PF00005 ABC transporter ALFP_2004 PF02803 Thiolase, C-terminal domain ALFP_2004 PF00108 Thiolase, N-terminal domain ALFP_2005 PF00108 Thiolase, N-terminal domain ALFP_2005 PF02803 Thiolase, C-terminal domain ALFP_2006 PF02803 Thiolase, C-terminal domain ALFP_2006 PF00108 Thiolase, N-terminal domain ALFP_2010 PF03466 LysR substrate binding domain ALFP_2010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2011 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ALFP_2011 PF01276 Orn/Lys/Arg decarboxylase, major domain ALFP_2011 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ALFP_2015 PF00625 Guanylate kinase ALFP_2016 PF01192 RNA polymerase Rpb6 ALFP_2017 PF02824 TGS domain ALFP_2017 PF13291 ACT domain ALFP_2017 PF04607 Region found in RelA / SpoT proteins ALFP_2019 PF03591 AzlC protein ALFP_2020 PF01551 Peptidase family M23 ALFP_2020 PF01476 LysM domain ALFP_2020 PF08525 Opacity-associated protein A N-terminal motif ALFP_2021 PF09312 SurA N-terminal domain ALFP_2021 PF00639 PPIC-type PPIASE domain ALFP_2022 PF03009 Glycerophosphoryl diester phosphodiesterase family ALFP_2023 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ALFP_2024 PF01479 S4 domain ALFP_2024 PF00849 RNA pseudouridylate synthase ALFP_2025 PF04345 Chorismate lyase ALFP_2026 PF07690 Major Facilitator Superfamily ALFP_2027 PF00248 Aldo/keto reductase family ALFP_2028 PF00543 Nitrogen regulatory protein P-II ALFP_2029 PF00924 Mechanosensitive ion channel ALFP_2030 PF14698 Argininosuccinate lyase C-terminal ALFP_2030 PF00206 Lyase ALFP_2031 PF00480 ROK family ALFP_2032 PF01804 Penicillin amidase ALFP_2033 PF01266 FAD dependent oxidoreductase ALFP_2035 PF05958 tRNA (Uracil-5-)-methyltransferase ALFP_2036 PF01476 LysM domain ALFP_2036 PF01551 Peptidase family M23 ALFP_2038 PF01975 Survival protein SurE ALFP_2039 PF02660 Glycerol-3-phosphate acyltransferase ALFP_2040 PF00814 Glycoprotease family ALFP_2041 PF00860 Permease family ALFP_2042 PF00085 Thioredoxin ALFP_2045 PF01205 Uncharacterized protein family UPF0029 ALFP_2046 PF12848 ABC transporter ALFP_2046 PF00005 ABC transporter ALFP_2047 PF02016 LD-carboxypeptidase N-terminal domain ALFP_2047 PF17676 LD-carboxypeptidase C-terminal domain ALFP_2048 PF14437 MafB19-like deaminase ALFP_2049 PF00005 ABC transporter ALFP_2050 PF01061 ABC-2 type transporter ALFP_2052 PF04461 Protein of unknown function (DUF520) ALFP_2053 PF13193 AMP-binding enzyme C-terminal domain ALFP_2053 PF00501 AMP-binding enzyme ALFP_2054 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ALFP_2055 PF00117 Glutamine amidotransferase class-I ALFP_2055 PF00958 GMP synthase C terminal domain ALFP_2055 PF02540 NAD synthase ALFP_2056 PF02311 AraC-like ligand binding domain ALFP_2056 PF12833 Helix-turn-helix domain ALFP_2057 PF13593 SBF-like CPA transporter family (DUF4137) ALFP_2058 PF08534 Redoxin ALFP_2059 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ALFP_2060 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_2062 PF01416 tRNA pseudouridine synthase ALFP_2064 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALFP_2064 PF02774 Semialdehyde dehydrogenase, dimerisation domain ALFP_2065 PF00180 Isocitrate/isopropylmalate dehydrogenase ALFP_2066 PF00694 Aconitase C-terminal domain ALFP_2067 PF00330 Aconitase family (aconitate hydratase) ALFP_2068 PF00392 Bacterial regulatory proteins, gntR family ALFP_2068 PF00155 Aminotransferase class I and II ALFP_2069 PF02627 Carboxymuconolactone decarboxylase family ALFP_2071 PF00072 Response regulator receiver domain ALFP_2071 PF00196 Bacterial regulatory proteins, luxR family ALFP_2072 PF00072 Response regulator receiver domain ALFP_2072 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2072 PF00512 His Kinase A (phospho-acceptor) domain ALFP_2072 PF08448 PAS fold ALFP_2072 PF13426 PAS domain ALFP_2074 PF01264 Chorismate synthase ALFP_2075 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ALFP_2077 PF03631 Virulence factor BrkB ALFP_2079 PF01207 Dihydrouridine synthase (Dus) ALFP_2080 PF01636 Phosphotransferase enzyme family ALFP_2085 PF00437 Type II/IV secretion system protein ALFP_2086 PF13629 Pilus formation protein N terminal region ALFP_2086 PF04972 BON domain ALFP_2086 PF00263 Bacterial type II and III secretion system protein ALFP_2092 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALFP_2093 PF00719 Inorganic pyrophosphatase ALFP_2095 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ALFP_2097 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ALFP_2097 PF03900 Porphobilinogen deaminase, C-terminal domain ALFP_2099 PF03741 Integral membrane protein TerC family ALFP_2100 PF00549 CoA-ligase ALFP_2100 PF02629 CoA binding domain ALFP_2101 PF00549 CoA-ligase ALFP_2101 PF08442 ATP-grasp domain ALFP_2103 PF08267 Cobalamin-independent synthase, N-terminal domain ALFP_2103 PF01717 Cobalamin-independent synthase, Catalytic domain ALFP_2104 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2104 PF03466 LysR substrate binding domain ALFP_2105 PF02631 RecX family ALFP_2106 PF00154 recA bacterial DNA recombination protein ALFP_2108 PF00072 Response regulator receiver domain ALFP_2108 PF00486 Transcriptional regulatory protein, C terminal ALFP_2109 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2109 PF00512 His Kinase A (phospho-acceptor) domain ALFP_2110 PF08946 Osmosensory transporter coiled coil ALFP_2110 PF00083 Sugar (and other) transporter ALFP_2111 PF04381 Putative exonuclease, RdgC ALFP_2113 PF00501 AMP-binding enzyme ALFP_2113 PF13193 AMP-binding enzyme C-terminal domain ALFP_2114 PF00378 Enoyl-CoA hydratase/isomerase ALFP_2115 PF04341 Protein of unknown function, DUF485 ALFP_2116 PF00474 Sodium:solute symporter family ALFP_2117 PF00171 Aldehyde dehydrogenase family ALFP_2118 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ALFP_2118 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ALFP_2121 PF00912 Transglycosylase ALFP_2121 PF00905 Penicillin binding protein transpeptidase domain ALFP_2122 PF00207 Alpha-2-macroglobulin family ALFP_2122 PF07703 Alpha-2-macroglobulin bait region domain ALFP_2122 PF01835 MG2 domain ALFP_2124 PF03060 Nitronate monooxygenase ALFP_2125 PF06969 HemN C-terminal domain ALFP_2125 PF04055 Radical SAM superfamily ALFP_2126 PF13244 Domain of unknown function (DUF4040) ALFP_2126 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ALFP_2126 PF00361 Proton-conducting membrane transporter ALFP_2126 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ALFP_2127 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ALFP_2128 PF00361 Proton-conducting membrane transporter ALFP_2130 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ALFP_2133 PF00083 Sugar (and other) transporter ALFP_2133 PF07690 Major Facilitator Superfamily ALFP_2135 PF11953 Domain of unknown function (DUF3470) ALFP_2135 PF00037 4Fe-4S binding domain ALFP_2138 PF02705 K+ potassium transporter ALFP_2139 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2139 PF00512 His Kinase A (phospho-acceptor) domain ALFP_2139 PF08521 Two-component sensor kinase N-terminal ALFP_2140 PF00486 Transcriptional regulatory protein, C terminal ALFP_2140 PF00072 Response regulator receiver domain ALFP_2141 PF02472 Biopolymer transport protein ExbD/TolR ALFP_2142 PF01618 MotA/TolQ/ExbB proton channel family ALFP_2144 PF12857 TOBE-like domain ALFP_2144 PF00005 ABC transporter ALFP_2145 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2146 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2150 PF00313 'Cold-shock' DNA-binding domain ALFP_2151 PF00216 Bacterial DNA-binding protein ALFP_2153 PF14824 Sirohaem biosynthesis protein central ALFP_2153 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALFP_2153 PF10414 Sirohaem synthase dimerisation region ALFP_2154 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_2157 PF17805 AsnC-like ligand binding domain ALFP_2158 PF17805 AsnC-like ligand binding domain ALFP_2159 PF06463 Molybdenum Cofactor Synthesis C ALFP_2159 PF04055 Radical SAM superfamily ALFP_2161 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALFP_2161 PF14824 Sirohaem biosynthesis protein central ALFP_2161 PF10414 Sirohaem synthase dimerisation region ALFP_2162 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_2163 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_2164 PF00155 Aminotransferase class I and II ALFP_2164 PF00392 Bacterial regulatory proteins, gntR family ALFP_2165 PF01053 Cys/Met metabolism PLP-dependent enzyme ALFP_2166 PF00588 SpoU rRNA Methylase family ALFP_2166 PF08032 RNA 2'-O ribose methyltransferase substrate binding ALFP_2167 PF00773 RNB domain ALFP_2167 PF08206 Ribonuclease B OB domain ALFP_2167 PF08461 Ribonuclease R winged-helix domain ALFP_2167 PF17876 Cold shock domain ALFP_2167 PF00575 S1 RNA binding domain ALFP_2169 PF00356 Bacterial regulatory proteins, lacI family ALFP_2171 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2172 PF00005 ABC transporter ALFP_2173 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_2175 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain ALFP_2175 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain ALFP_2176 PF07005 Sugar-binding N-terminal domain ALFP_2176 PF17042 Nucleotide-binding C-terminal domain ALFP_2178 PF04954 Siderophore-interacting protein ALFP_2178 PF08021 Siderophore-interacting FAD-binding domain ALFP_2181 PF01494 FAD binding domain ALFP_2182 PF01478 Type IV leader peptidase family ALFP_2182 PF06750 Bacterial Peptidase A24 N-terminal domain ALFP_2184 PF03466 LysR substrate binding domain ALFP_2184 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2185 PF00005 ABC transporter ALFP_2185 PF08402 TOBE domain ALFP_2186 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2187 PF13419 Haloacid dehalogenase-like hydrolase ALFP_2189 PF01266 FAD dependent oxidoreductase ALFP_2192 PF01738 Dienelactone hydrolase family ALFP_2193 PF12843 Putative quorum-sensing-regulated virulence factor ALFP_2194 PF02798 Glutathione S-transferase, N-terminal domain ALFP_2195 PF02678 Pirin ALFP_2195 PF05726 Pirin C-terminal cupin domain ALFP_2197 PF00795 Carbon-nitrogen hydrolase ALFP_2198 PF07690 Major Facilitator Superfamily ALFP_2199 PF07690 Major Facilitator Superfamily ALFP_2200 PF12833 Helix-turn-helix domain ALFP_2200 PF02311 AraC-like ligand binding domain ALFP_2201 PF03594 Benzoate membrane transport protein ALFP_2203 PF03746 LamB/YcsF family ALFP_2204 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2204 PF03466 LysR substrate binding domain ALFP_2205 PF01799 [2Fe-2S] binding domain ALFP_2205 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_2206 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALFP_2206 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_2208 PF01979 Amidohydrolase family ALFP_2209 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ALFP_2210 PF00072 Response regulator receiver domain ALFP_2210 PF00486 Transcriptional regulatory protein, C terminal ALFP_2211 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2211 PF00512 His Kinase A (phospho-acceptor) domain ALFP_2211 PF00672 HAMP domain ALFP_2212 PF04539 Sigma-70 region 3 ALFP_2212 PF04542 Sigma-70 region 2 ALFP_2212 PF04546 Sigma-70, non-essential region ALFP_2212 PF00140 Sigma-70 factor, region 1.2 ALFP_2212 PF03979 Sigma-70 factor, region 1.1 ALFP_2212 PF04545 Sigma-70, region 4 ALFP_2213 PF10410 DnaB-helicase binding domain of primase ALFP_2213 PF08278 DNA primase DnaG DnaB-binding ALFP_2213 PF08275 DNA primase catalytic core, N-terminal domain ALFP_2213 PF01807 CHC2 zinc finger ALFP_2214 PF01165 Ribosomal protein S21 ALFP_2215 PF00156 Phosphoribosyl transferase domain ALFP_2216 PF00709 Adenylosuccinate synthetase ALFP_2217 PF13393 Histidyl-tRNA synthetase ALFP_2218 PF01145 SPFH domain / Band 7 family ALFP_2219 PF01145 SPFH domain / Band 7 family ALFP_2219 PF12221 Bacterial membrane protein N terminal ALFP_2220 PF13167 GTP-binding GTPase N-terminal ALFP_2220 PF01926 50S ribosome-binding GTPase ALFP_2220 PF16360 GTP-binding GTPase Middle Region ALFP_2221 PF17209 Hfq protein ALFP_2222 PF00155 Aminotransferase class I and II ALFP_2223 PF01926 50S ribosome-binding GTPase ALFP_2223 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ALFP_2224 PF13360 PQQ-like domain ALFP_2225 PF09976 Tetratricopeptide repeat-like domain ALFP_2226 PF03129 Anticodon binding domain ALFP_2226 PF13393 Histidyl-tRNA synthetase ALFP_2227 PF04551 GcpE protein ALFP_2229 PF04055 Radical SAM superfamily ALFP_2230 PF00334 Nucleoside diphosphate kinase ALFP_2231 PF08264 Anticodon-binding domain of tRNA ALFP_2231 PF00133 tRNA synthetases class I (I, L, M and V) ALFP_2231 PF10458 Valyl tRNA synthetase tRNA binding arm ALFP_2232 PF01746 tRNA (Guanine-1)-methyltransferase ALFP_2233 PF01782 RimM N-terminal domain ALFP_2234 PF00886 Ribosomal protein S16 ALFP_2235 PF01206 Sulfurtransferase TusA ALFP_2236 PF01411 tRNA synthetases class II (A) ALFP_2236 PF02272 DHHA1 domain ALFP_2236 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALFP_2239 PF00576 HIUase/Transthyretin family ALFP_2246 PF13416 Bacterial extracellular solute-binding protein ALFP_2247 PF01266 FAD dependent oxidoreductase ALFP_2248 PF00970 Oxidoreductase FAD-binding domain ALFP_2248 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_2248 PF00175 Oxidoreductase NAD-binding domain ALFP_2249 PF00521 DNA gyrase/topoisomerase IV, subunit A ALFP_2250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2250 PF00204 DNA gyrase B ALFP_2250 PF00986 DNA gyrase B subunit, carboxyl terminus ALFP_2250 PF01751 Toprim domain ALFP_2251 PF00085 Thioredoxin ALFP_2252 PF07497 Rho termination factor, RNA-binding domain ALFP_2252 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALFP_2252 PF07498 Rho termination factor, N-terminal domain ALFP_2253 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ALFP_2253 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALFP_2255 PF00866 Ring hydroxylating beta subunit ALFP_2256 PF00355 Rieske [2Fe-2S] domain ALFP_2256 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_2257 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALFP_2257 PF00005 ABC transporter ALFP_2259 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALFP_2262 PF07729 FCD domain ALFP_2262 PF00392 Bacterial regulatory proteins, gntR family ALFP_2265 PF03710 Glutamate-ammonia ligase adenylyltransferase ALFP_2265 PF08335 GlnD PII-uridylyltransferase ALFP_2266 PF02677 Epoxyqueuosine reductase QueH ALFP_2267 PF10431 C-terminal, D2-small domain, of ClpB protein ALFP_2267 PF17871 AAA lid domain ALFP_2267 PF07724 AAA domain (Cdc48 subfamily) ALFP_2267 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_2267 PF02861 Clp amino terminal domain, pathogenicity island component ALFP_2268 PF00027 Cyclic nucleotide-binding domain ALFP_2268 PF13545 Crp-like helix-turn-helix domain ALFP_2271 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ALFP_2271 PF12801 4Fe-4S binding domain ALFP_2271 PF13746 4Fe-4S dicluster domain ALFP_2272 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ALFP_2272 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_2275 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_2277 PF00403 Heavy-metal-associated domain ALFP_2279 PF00463 Isocitrate lyase family ALFP_2280 PF14489 QueF-like protein ALFP_2280 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ALFP_2282 PF01066 CDP-alcohol phosphatidyltransferase ALFP_2283 PF08459 UvrC Helix-hairpin-helix N-terminal ALFP_2283 PF01541 GIY-YIG catalytic domain ALFP_2283 PF02151 UvrB/uvrC motif ALFP_2284 PF00933 Glycosyl hydrolase family 3 N terminal domain ALFP_2285 PF01648 4'-phosphopantetheinyl transferase superfamily ALFP_2287 PF03061 Thioesterase superfamily ALFP_2288 PF00378 Enoyl-CoA hydratase/isomerase ALFP_2289 PF00171 Aldehyde dehydrogenase family ALFP_2290 PF00175 Oxidoreductase NAD-binding domain ALFP_2290 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_2290 PF00970 Oxidoreductase FAD-binding domain ALFP_2291 PF01883 Iron-sulfur cluster assembly protein ALFP_2292 PF05138 Phenylacetic acid catabolic protein ALFP_2293 PF06243 Phenylacetic acid degradation B ALFP_2294 PF05138 Phenylacetic acid catabolic protein ALFP_2296 PF00929 Exonuclease ALFP_2297 PF01435 Peptidase family M48 ALFP_2297 PF16491 CAAX prenyl protease N-terminal, five membrane helices ALFP_2298 PF03193 RsgA GTPase ALFP_2300 PF01245 Ribosomal protein L19 ALFP_2302 PF10437 Bacterial lipoate protein ligase C-terminus ALFP_2302 PF03099 Biotin/lipoate A/B protein ligase family ALFP_2304 PF00578 AhpC/TSA family ALFP_2304 PF10417 C-terminal domain of 1-Cys peroxiredoxin ALFP_2305 PF12806 Acetyl-CoA dehydrogenase C-terminal like ALFP_2305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_2305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_2305 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_2306 PF00766 Electron transfer flavoprotein FAD-binding domain ALFP_2306 PF01012 Electron transfer flavoprotein domain ALFP_2307 PF01012 Electron transfer flavoprotein domain ALFP_2308 PF00850 Histone deacetylase domain ALFP_2310 PF13406 Transglycosylase SLT domain ALFP_2311 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_2312 PF10531 SLBB domain ALFP_2313 PF01370 NAD dependent epimerase/dehydratase family ALFP_2314 PF00294 pfkB family carbohydrate kinase ALFP_2315 PF18073 Rubredoxin metal binding domain ALFP_2317 PF00216 Bacterial DNA-binding protein ALFP_2318 PF00575 S1 RNA binding domain ALFP_2319 PF02224 Cytidylate kinase ALFP_2320 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALFP_2321 PF02153 Prephenate dehydrogenase ALFP_2322 PF01842 ACT domain ALFP_2322 PF01817 Chorismate mutase type II ALFP_2322 PF00800 Prephenate dehydratase ALFP_2323 PF00266 Aminotransferase class-V ALFP_2324 PF03989 DNA gyrase C-terminal domain, beta-propeller ALFP_2324 PF00521 DNA gyrase/topoisomerase IV, subunit A ALFP_2325 PF00691 OmpA family ALFP_2327 PF13419 Haloacid dehalogenase-like hydrolase ALFP_2328 PF03466 LysR substrate binding domain ALFP_2328 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2329 PF07690 Major Facilitator Superfamily ALFP_2330 PF11953 Domain of unknown function (DUF3470) ALFP_2330 PF00037 4Fe-4S binding domain ALFP_2332 PF07715 TonB-dependent Receptor Plug Domain ALFP_2332 PF00593 TonB dependent receptor ALFP_2335 PF00199 Catalase ALFP_2335 PF06628 Catalase-related immune-responsive ALFP_2335 PF18011 C-terminal domain found in long catalases ALFP_2337 PF08713 DNA alkylation repair enzyme ALFP_2340 PF00155 Aminotransferase class I and II ALFP_2341 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2341 PF03466 LysR substrate binding domain ALFP_2342 PF01042 Endoribonuclease L-PSP ALFP_2343 PF00440 Bacterial regulatory proteins, tetR family ALFP_2349 PF00392 Bacterial regulatory proteins, gntR family ALFP_2349 PF00155 Aminotransferase class I and II ALFP_2354 PF00043 Glutathione S-transferase, C-terminal domain ALFP_2354 PF02798 Glutathione S-transferase, N-terminal domain ALFP_2361 PF04851 Type III restriction enzyme, res subunit ALFP_2361 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ALFP_2361 PF08463 EcoEI R protein C-terminal ALFP_2361 PF00271 Helicase conserved C-terminal domain ALFP_2364 PF12161 HsdM N-terminal domain ALFP_2364 PF02384 N-6 DNA Methylase ALFP_2366 PF00665 Integrase core domain ALFP_2366 PF09299 Mu transposase, C-terminal ALFP_2369 PF00375 Sodium:dicarboxylate symporter family ALFP_2370 PF01810 LysE type translocator ALFP_2375 PF00474 Sodium:solute symporter family ALFP_2376 PF00196 Bacterial regulatory proteins, luxR family ALFP_2376 PF00072 Response regulator receiver domain ALFP_2377 PF00512 His Kinase A (phospho-acceptor) domain ALFP_2377 PF00989 PAS fold ALFP_2377 PF16736 Single Cache-like ALFP_2377 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2380 PF01747 ATP-sulfurylase ALFP_2380 PF14306 PUA-like domain ALFP_2381 PF17284 Spermidine synthase tetramerisation domain ALFP_2382 PF00512 His Kinase A (phospho-acceptor) domain ALFP_2382 PF08521 Two-component sensor kinase N-terminal ALFP_2382 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2383 PF00072 Response regulator receiver domain ALFP_2383 PF00486 Transcriptional regulatory protein, C terminal ALFP_2384 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_2384 PF08447 PAS fold ALFP_2385 PF01169 Uncharacterized protein family UPF0016 ALFP_2387 PF03466 LysR substrate binding domain ALFP_2387 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2388 PF02525 Flavodoxin-like fold ALFP_2389 PF00925 GTP cyclohydrolase II ALFP_2392 PF03109 ABC1 family ALFP_2393 PF04228 Putative neutral zinc metallopeptidase ALFP_2395 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ALFP_2396 PF01047 MarR family ALFP_2399 PF00543 Nitrogen regulatory protein P-II ALFP_2400 PF00909 Ammonium Transporter Family ALFP_2401 PF01322 Cytochrome C' ALFP_2402 PF08328 Adenylosuccinate lyase C-terminal ALFP_2402 PF00206 Lyase ALFP_2403 PF00043 Glutathione S-transferase, C-terminal domain ALFP_2403 PF02798 Glutathione S-transferase, N-terminal domain ALFP_2405 PF07859 alpha/beta hydrolase fold ALFP_2406 PF01925 Sulfite exporter TauE/SafE ALFP_2408 PF02913 FAD linked oxidases, C-terminal domain ALFP_2408 PF01565 FAD binding domain ALFP_2409 PF00793 DAHP synthetase I family ALFP_2410 PF04328 Selenoprotein, putative ALFP_2411 PF02554 Carbon starvation protein CstA ALFP_2411 PF13722 5TM C-terminal transporter carbon starvation CstA ALFP_2412 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_2413 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2414 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2415 PF00005 ABC transporter ALFP_2416 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALFP_2416 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALFP_2416 PF00205 Thiamine pyrophosphate enzyme, central domain ALFP_2417 PF00171 Aldehyde dehydrogenase family ALFP_2418 PF01958 Domain of unknown function DUF108 ALFP_2418 PF03447 Homoserine dehydrogenase, NAD binding domain ALFP_2420 PF12697 Alpha/beta hydrolase family ALFP_2420 PF08241 Methyltransferase domain ALFP_2421 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2422 PF00005 ABC transporter ALFP_2425 PF13609 Gram-negative porin ALFP_2426 PF09339 IclR helix-turn-helix domain ALFP_2426 PF01614 Bacterial transcriptional regulator ALFP_2428 PF05721 Phytanoyl-CoA dioxygenase (PhyH) ALFP_2429 PF06339 Ectoine synthase ALFP_2430 PF00202 Aminotransferase class-III ALFP_2431 PF00583 Acetyltransferase (GNAT) family ALFP_2432 PF01047 MarR family ALFP_2433 PF00892 EamA-like transporter family ALFP_2434 PF01523 Putative modulator of DNA gyrase ALFP_2435 PF00816 H-NS histone family ALFP_2437 PF11940 Domain of unknown function (DUF3458) Ig-like fold ALFP_2437 PF01433 Peptidase family M1 domain ALFP_2437 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ALFP_2438 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ALFP_2439 PF00107 Zinc-binding dehydrogenase ALFP_2439 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_2441 PF00180 Isocitrate/isopropylmalate dehydrogenase ALFP_2442 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_2443 PF05872 Bacterial protein of unknown function (DUF853) ALFP_2444 PF01709 Transcriptional regulator ALFP_2445 PF02844 Phosphoribosylglycinamide synthetase, N domain ALFP_2445 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ALFP_2445 PF02843 Phosphoribosylglycinamide synthetase, C domain ALFP_2446 PF01218 Coproporphyrinogen III oxidase ALFP_2447 PF01467 Cytidylyltransferase-like ALFP_2449 PF02590 Predicted SPOUT methyltransferase ALFP_2450 PF02545 Maf-like protein ALFP_2451 PF13098 Thioredoxin-like domain ALFP_2454 PF01253 Translation initiation factor SUI1 ALFP_2456 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALFP_2456 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALFP_2457 PF02798 Glutathione S-transferase, N-terminal domain ALFP_2457 PF14497 Glutathione S-transferase, C-terminal domain ALFP_2458 PF02401 LytB protein ALFP_2459 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALFP_2460 PF04002 RadC-like JAB domain ALFP_2461 PF01380 SIS domain ALFP_2461 PF01418 Helix-turn-helix domain, rpiR family ALFP_2462 PF00083 Sugar (and other) transporter ALFP_2464 PF07690 Major Facilitator Superfamily ALFP_2465 PF01197 Ribosomal protein L31 ALFP_2467 PF01554 MatE ALFP_2468 PF00571 CBS domain ALFP_2468 PF00005 ABC transporter ALFP_2469 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2473 PF07690 Major Facilitator Superfamily ALFP_2474 PF00830 Ribosomal L28 family ALFP_2475 PF00471 Ribosomal protein L33 ALFP_2476 PF09334 tRNA synthetases class I (M) ALFP_2476 PF00133 tRNA synthetases class I (I, L, M and V) ALFP_2476 PF08264 Anticodon-binding domain of tRNA ALFP_2476 PF13603 Leucyl-tRNA synthetase, Domain 2 ALFP_2478 PF06144 DNA polymerase III, delta subunit ALFP_2478 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ALFP_2479 PF00171 Aldehyde dehydrogenase family ALFP_2481 PF01170 Putative RNA methylase family UPF0020 ALFP_2481 PF02926 THUMP domain ALFP_2484 PF01430 Hsp33 protein ALFP_2486 PF04977 Septum formation initiator ALFP_2487 PF00113 Enolase, C-terminal TIM barrel domain ALFP_2487 PF03952 Enolase, N-terminal domain ALFP_2489 PF07690 Major Facilitator Superfamily ALFP_2492 PF00793 DAHP synthetase I family ALFP_2493 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_2494 PF00117 Glutamine amidotransferase class-I ALFP_2494 PF06418 CTP synthase N-terminus ALFP_2495 PF00557 Metallopeptidase family M24 ALFP_2495 PF01321 Creatinase/Prolidase N-terminal domain ALFP_2496 PF01144 Coenzyme A transferase ALFP_2497 PF01144 Coenzyme A transferase ALFP_2500 PF00892 EamA-like transporter family ALFP_2501 PF16177 Acetyl-coenzyme A synthetase N-terminus ALFP_2501 PF13193 AMP-binding enzyme C-terminal domain ALFP_2501 PF00501 AMP-binding enzyme ALFP_2504 PF00877 NlpC/P60 family ALFP_2506 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2506 PF03466 LysR substrate binding domain ALFP_2507 PF00171 Aldehyde dehydrogenase family ALFP_2508 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2508 PF03466 LysR substrate binding domain ALFP_2510 PF00883 Cytosol aminopeptidase family, catalytic domain ALFP_2510 PF02789 Cytosol aminopeptidase family, N-terminal domain ALFP_2512 PF01027 Inhibitor of apoptosis-promoting Bax1 ALFP_2513 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_2516 PF11967 Recombination protein O N terminal ALFP_2516 PF02565 Recombination protein O C terminal ALFP_2517 PF01926 50S ribosome-binding GTPase ALFP_2517 PF07650 KH domain ALFP_2518 PF00035 Double-stranded RNA binding motif ALFP_2518 PF14622 Ribonuclease-III-like ALFP_2519 PF10502 Signal peptidase, peptidase S26 ALFP_2520 PF00679 Elongation factor G C-terminus ALFP_2520 PF03144 Elongation factor Tu domain 2 ALFP_2520 PF00009 Elongation factor Tu GTP binding domain ALFP_2520 PF06421 GTP-binding protein LepA C-terminus ALFP_2521 PF13180 PDZ domain ALFP_2524 PF04542 Sigma-70 region 2 ALFP_2524 PF08281 Sigma-70, region 4 ALFP_2526 PF00109 Beta-ketoacyl synthase, N-terminal domain ALFP_2526 PF02801 Beta-ketoacyl synthase, C-terminal domain ALFP_2527 PF00550 Phosphopantetheine attachment site ALFP_2529 PF00698 Acyl transferase domain ALFP_2530 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ALFP_2530 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ALFP_2531 PF02504 Fatty acid synthesis protein ALFP_2532 PF01783 Ribosomal L32p protein family ALFP_2533 PF02620 Large ribosomal RNA subunit accumulation protein YceD ALFP_2534 PF02545 Maf-like protein ALFP_2535 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALFP_2536 PF01510 N-acetylmuramoyl-L-alanine amidase ALFP_2537 PF01794 Ferric reductase like transmembrane component ALFP_2538 PF00174 Oxidoreductase molybdopterin binding domain ALFP_2539 PF13419 Haloacid dehalogenase-like hydrolase ALFP_2540 PF00849 RNA pseudouridylate synthase ALFP_2540 PF01479 S4 domain ALFP_2541 PF00575 S1 RNA binding domain ALFP_2541 PF12111 Polyribonucleotide phosphorylase C terminal ALFP_2541 PF10150 Ribonuclease E/G family ALFP_2542 PF17848 Acetyl-coA carboxylase zinc finger domain ALFP_2542 PF01039 Carboxyl transferase domain ALFP_2543 PF00290 Tryptophan synthase alpha chain ALFP_2544 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_2545 PF13291 ACT domain ALFP_2545 PF04607 Region found in RelA / SpoT proteins ALFP_2545 PF02824 TGS domain ALFP_2547 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ALFP_2547 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ALFP_2548 PF00037 4Fe-4S binding domain ALFP_2548 PF11953 Domain of unknown function (DUF3470) ALFP_2550 PF04060 Putative Fe-S cluster ALFP_2551 PF00633 Helix-hairpin-helix motif ALFP_2551 PF10576 Iron-sulfur binding domain of endonuclease III ALFP_2551 PF00730 HhH-GPD superfamily base excision DNA repair protein ALFP_2552 PF00005 ABC transporter ALFP_2552 PF00664 ABC transporter transmembrane region ALFP_2553 PF03922 OmpW family ALFP_2554 PF00005 ABC transporter ALFP_2555 PF00005 ABC transporter ALFP_2555 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_2559 PF01641 SelR domain ALFP_2560 PF04279 Intracellular septation protein A ALFP_2563 PF12826 Helix-hairpin-helix motif ALFP_2563 PF01653 NAD-dependent DNA ligase adenylation domain ALFP_2563 PF03120 NAD-dependent DNA ligase OB-fold domain ALFP_2563 PF00533 BRCA1 C Terminus (BRCT) domain ALFP_2563 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ALFP_2565 PF02463 RecF/RecN/SMC N terminal domain ALFP_2565 PF06470 SMC proteins Flexible Hinge Domain ALFP_2566 PF07690 Major Facilitator Superfamily ALFP_2567 PF03167 Uracil DNA glycosylase superfamily ALFP_2568 PF00814 Glycoprotease family ALFP_2569 PF00486 Transcriptional regulatory protein, C terminal ALFP_2569 PF00072 Response regulator receiver domain ALFP_2570 PF00512 His Kinase A (phospho-acceptor) domain ALFP_2570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2570 PF00672 HAMP domain ALFP_2571 PF02542 YgbB family ALFP_2572 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ALFP_2573 PF17757 UvrB interaction domain ALFP_2573 PF03461 TRCF domain ALFP_2573 PF00271 Helicase conserved C-terminal domain ALFP_2573 PF00270 DEAD/DEAH box helicase ALFP_2573 PF02559 CarD-like/TRCF domain ALFP_2575 PF03060 Nitronate monooxygenase ALFP_2577 PF00361 Proton-conducting membrane transporter ALFP_2578 PF00361 Proton-conducting membrane transporter ALFP_2578 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ALFP_2579 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ALFP_2579 PF00361 Proton-conducting membrane transporter ALFP_2580 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ALFP_2581 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ALFP_2582 PF12838 4Fe-4S dicluster domain ALFP_2583 PF00146 NADH dehydrogenase ALFP_2584 PF00384 Molybdopterin oxidoreductase ALFP_2584 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ALFP_2584 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ALFP_2585 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ALFP_2585 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ALFP_2585 PF10531 SLBB domain ALFP_2587 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ALFP_2588 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ALFP_2589 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ALFP_2590 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ALFP_2592 PF13609 Gram-negative porin ALFP_2593 PF03840 Preprotein translocase SecG subunit ALFP_2594 PF00121 Triosephosphate isomerase ALFP_2595 PF00107 Zinc-binding dehydrogenase ALFP_2595 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_2596 PF07969 Amidohydrolase family ALFP_2597 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ALFP_2597 PF03725 3' exoribonuclease family, domain 2 ALFP_2597 PF00013 KH domain ALFP_2597 PF01138 3' exoribonuclease family, domain 1 ALFP_2597 PF00575 S1 RNA binding domain ALFP_2598 PF00312 Ribosomal protein S15 ALFP_2599 PF01066 CDP-alcohol phosphatidyltransferase ALFP_2600 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ALFP_2600 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ALFP_2601 PF10369 Small subunit of acetolactate synthase ALFP_2602 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALFP_2602 PF00205 Thiamine pyrophosphate enzyme, central domain ALFP_2602 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALFP_2603 PF12805 FUSC-like inner membrane protein yccS ALFP_2604 PF03883 Peroxide stress protein YaaA ALFP_2609 PF02403 Seryl-tRNA synthetase N-terminal domain ALFP_2609 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALFP_2610 PF16193 AAA C-terminal domain ALFP_2610 PF12002 MgsA AAA+ ATPase C terminal ALFP_2610 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_2611 PF03548 Outer membrane lipoprotein carrier protein LolA ALFP_2612 PF09397 Ftsk gamma domain ALFP_2612 PF17854 FtsK alpha domain ALFP_2612 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ALFP_2612 PF01580 FtsK/SpoIIIE family ALFP_2613 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_2617 PF07690 Major Facilitator Superfamily ALFP_2621 PF00135 Carboxylesterase family ALFP_2622 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ALFP_2622 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_2623 PF00180 Isocitrate/isopropylmalate dehydrogenase ALFP_2626 PF00034 Cytochrome c ALFP_2627 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_2627 PF01434 Peptidase family M41 ALFP_2627 PF17862 AAA+ lid domain ALFP_2631 PF00072 Response regulator receiver domain ALFP_2631 PF00158 Sigma-54 interaction domain ALFP_2631 PF02954 Bacterial regulatory protein, Fis family ALFP_2637 PF00437 Type II/IV secretion system protein ALFP_2639 PF13629 Pilus formation protein N terminal region ALFP_2639 PF00263 Bacterial type II and III secretion system protein ALFP_2639 PF04972 BON domain ALFP_2645 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ALFP_2645 PF08479 POTRA domain, ShlB-type ALFP_2652 PF05193 Peptidase M16 inactive domain ALFP_2652 PF00675 Insulinase (Peptidase family M16) ALFP_2653 PF01556 DnaJ C terminal domain ALFP_2653 PF00226 DnaJ domain ALFP_2653 PF00684 DnaJ central domain ALFP_2654 PF00012 Hsp70 protein ALFP_2655 PF01025 GrpE ALFP_2656 PF00762 Ferrochelatase ALFP_2657 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ALFP_2657 PF01628 HrcA protein C terminal domain ALFP_2658 PF01513 ATP-NAD kinase ALFP_2659 PF02463 RecF/RecN/SMC N terminal domain ALFP_2660 PF01475 Ferric uptake regulator family ALFP_2661 PF04355 SmpA / OmlA family ALFP_2662 PF01113 Dihydrodipicolinate reductase, N-terminus ALFP_2662 PF05173 Dihydrodipicolinate reductase, C-terminus ALFP_2665 PF00561 alpha/beta hydrolase fold ALFP_2666 PF00465 Iron-containing alcohol dehydrogenase ALFP_2667 PF07690 Major Facilitator Superfamily ALFP_2670 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ALFP_2670 PF01565 FAD binding domain ALFP_2671 PF05199 GMC oxidoreductase ALFP_2671 PF00732 GMC oxidoreductase ALFP_2674 PF02321 Outer membrane efflux protein ALFP_2675 PF13533 Biotin-lipoyl like ALFP_2679 PF07715 TonB-dependent Receptor Plug Domain ALFP_2679 PF07660 Secretin and TonB N terminus short domain ALFP_2679 PF00593 TonB dependent receptor ALFP_2680 PF07690 Major Facilitator Superfamily ALFP_2683 PF00756 Putative esterase ALFP_2687 PF00465 Iron-containing alcohol dehydrogenase ALFP_2688 PF00005 ABC transporter ALFP_2689 PF00005 ABC transporter ALFP_2691 PF02653 Branched-chain amino acid transport system / permease component ALFP_2693 PF00171 Aldehyde dehydrogenase family ALFP_2694 PF01614 Bacterial transcriptional regulator ALFP_2694 PF09339 IclR helix-turn-helix domain ALFP_2695 PF00270 DEAD/DEAH box helicase ALFP_2695 PF00271 Helicase conserved C-terminal domain ALFP_2695 PF03880 DbpA RNA binding domain ALFP_2696 PF03466 LysR substrate binding domain ALFP_2696 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2697 PF00355 Rieske [2Fe-2S] domain ALFP_2697 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_2698 PF00866 Ring hydroxylating beta subunit ALFP_2699 PF00355 Rieske [2Fe-2S] domain ALFP_2700 PF00106 short chain dehydrogenase ALFP_2701 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_2701 PF14759 Reductase C-terminal ALFP_2702 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ALFP_2703 PF12697 Alpha/beta hydrolase family ALFP_2704 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALFP_2705 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation ALFP_2705 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALFP_2706 PF00682 HMGL-like ALFP_2706 PF07836 DmpG-like communication domain ALFP_2707 PF07690 Major Facilitator Superfamily ALFP_2710 PF01425 Amidase ALFP_2711 PF00392 Bacterial regulatory proteins, gntR family ALFP_2711 PF00155 Aminotransferase class I and II ALFP_2712 PF07690 Major Facilitator Superfamily ALFP_2715 PF11339 Protein of unknown function (DUF3141) ALFP_2716 PF02803 Thiolase, C-terminal domain ALFP_2716 PF00108 Thiolase, N-terminal domain ALFP_2717 PF00106 short chain dehydrogenase ALFP_2720 PF00005 ABC transporter ALFP_2721 PF13533 Biotin-lipoyl like ALFP_2722 PF02321 Outer membrane efflux protein ALFP_2723 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus ALFP_2723 PF00561 alpha/beta hydrolase fold ALFP_2725 PF02592 Putative vitamin uptake transporter ALFP_2726 PF06508 Queuosine biosynthesis protein QueC ALFP_2727 PF00464 Serine hydroxymethyltransferase ALFP_2728 PF00266 Aminotransferase class-V ALFP_2731 PF00392 Bacterial regulatory proteins, gntR family ALFP_2731 PF00155 Aminotransferase class I and II ALFP_2732 PF00464 Serine hydroxymethyltransferase ALFP_2735 PF00117 Glutamine amidotransferase class-I ALFP_2736 PF08543 Phosphomethylpyrimidine kinase ALFP_2737 PF02028 BCCT, betaine/carnitine/choline family transporter ALFP_2738 PF09278 MerR, DNA binding ALFP_2738 PF00376 MerR family regulatory protein ALFP_2741 PF00873 AcrB/AcrD/AcrF family ALFP_2746 PF02293 AmiS/UreI family transporter ALFP_2752 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_2753 PF00155 Aminotransferase class I and II ALFP_2753 PF00392 Bacterial regulatory proteins, gntR family ALFP_2755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2755 PF03466 LysR substrate binding domain ALFP_2756 PF00202 Aminotransferase class-III ALFP_2757 PF01177 Asp/Glu/Hydantoin racemase ALFP_2758 PF02371 Transposase IS116/IS110/IS902 family ALFP_2758 PF01548 Transposase ALFP_2761 PF05506 Domain of unknown function (DUF756) ALFP_2761 PF04185 Phosphoesterase family ALFP_2764 PF01389 OmpA-like transmembrane domain ALFP_2764 PF00691 OmpA family ALFP_2765 PF13018 Extended Signal Peptide of Type V secretion system ALFP_2765 PF05662 Coiled stalk of trimeric autotransporter adhesin ALFP_2765 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin ALFP_2765 PF03895 YadA-like membrane anchor domain ALFP_2767 PF02796 Helix-turn-helix domain of resolvase ALFP_2767 PF00239 Resolvase, N terminal domain ALFP_2768 PF00482 Type II secretion system (T2SS), protein F ALFP_2769 PF00437 Type II/IV secretion system protein ALFP_2770 PF03958 Bacterial type II/III secretion system short domain ALFP_2770 PF00263 Bacterial type II and III secretion system protein ALFP_2775 PF07963 Prokaryotic N-terminal methylation motif ALFP_2775 PF11612 Type II secretion system (T2SS), protein J ALFP_2778 PF07963 Prokaryotic N-terminal methylation motif ALFP_2778 PF08334 Type II secretion system (T2SS), protein G ALFP_2780 PF00478 IMP dehydrogenase / GMP reductase domain ALFP_2780 PF00571 CBS domain ALFP_2781 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_2783 PF00206 Lyase ALFP_2783 PF10415 Fumarase C C-terminus ALFP_2785 PF01047 MarR family ALFP_2788 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ALFP_2789 PF04377 Arginine-tRNA-protein transferase, C terminus ALFP_2789 PF04376 Arginine-tRNA-protein transferase, N terminus ALFP_2790 PF01180 Dihydroorotate dehydrogenase ALFP_2793 PF01614 Bacterial transcriptional regulator ALFP_2793 PF09339 IclR helix-turn-helix domain ALFP_2797 PF00271 Helicase conserved C-terminal domain ALFP_2797 PF00270 DEAD/DEAH box helicase ALFP_2801 PF00561 alpha/beta hydrolase fold ALFP_2802 PF01435 Peptidase family M48 ALFP_2807 PF01494 FAD binding domain ALFP_2808 PF01207 Dihydrouridine synthase (Dus) ALFP_2809 PF02954 Bacterial regulatory protein, Fis family ALFP_2810 PF02142 MGS-like domain ALFP_2810 PF01808 AICARFT/IMPCHase bienzyme ALFP_2811 PF02075 Crossover junction endodeoxyribonuclease RuvC ALFP_2812 PF01330 RuvA N terminal domain ALFP_2812 PF07499 RuvA, C-terminal domain ALFP_2813 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_2814 PF05491 RuvB C-terminal winged helix domain ALFP_2814 PF17864 RuvB AAA lid domain ALFP_2814 PF05496 Holliday junction DNA helicase RuvB P-loop domain ALFP_2816 PF01979 Amidohydrolase family ALFP_2818 PF03441 FAD binding domain of DNA photolyase ALFP_2818 PF00875 DNA photolyase ALFP_2822 PF00581 Rhodanese-like domain ALFP_2823 PF04143 Sulphur transport ALFP_2826 PF01625 Peptide methionine sulfoxide reductase ALFP_2827 PF00034 Cytochrome c ALFP_2828 PF01790 Prolipoprotein diacylglyceryl transferase ALFP_2832 PF01970 Tripartite tricarboxylate transporter TctA family ALFP_2833 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2834 PF08402 TOBE domain ALFP_2834 PF00005 ABC transporter ALFP_2836 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALFP_2836 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALFP_2837 PF00512 His Kinase A (phospho-acceptor) domain ALFP_2837 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2838 PF00072 Response regulator receiver domain ALFP_2838 PF00486 Transcriptional regulatory protein, C terminal ALFP_2839 PF00293 NUDIX domain ALFP_2840 PF03129 Anticodon binding domain ALFP_2840 PF04073 Aminoacyl-tRNA editing domain ALFP_2840 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALFP_2841 PF03061 Thioesterase superfamily ALFP_2842 PF01618 MotA/TolQ/ExbB proton channel family ALFP_2843 PF02472 Biopolymer transport protein ExbD/TolR ALFP_2845 PF07676 WD40-like Beta Propeller Repeat ALFP_2845 PF04052 TolB amino-terminal domain ALFP_2846 PF00691 OmpA family ALFP_2848 PF00561 alpha/beta hydrolase fold ALFP_2851 PF01554 MatE ALFP_2852 PF02608 ABC transporter substrate-binding protein PnrA-like ALFP_2855 PF00005 ABC transporter ALFP_2857 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain ALFP_2857 PF01113 Dihydrodipicolinate reductase, N-terminus ALFP_2858 PF01810 LysE type translocator ALFP_2859 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ALFP_2859 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ALFP_2860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2860 PF03466 LysR substrate binding domain ALFP_2861 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_2861 PF13192 Thioredoxin domain ALFP_2862 PF10417 C-terminal domain of 1-Cys peroxiredoxin ALFP_2862 PF00578 AhpC/TSA family ALFP_2863 PF00155 Aminotransferase class I and II ALFP_2864 PF00892 EamA-like transporter family ALFP_2865 PF01507 Phosphoadenosine phosphosulfate reductase family ALFP_2866 PF01507 Phosphoadenosine phosphosulfate reductase family ALFP_2867 PF00009 Elongation factor Tu GTP binding domain ALFP_2868 PF00324 Amino acid permease ALFP_2869 PF00171 Aldehyde dehydrogenase family ALFP_2870 PF01266 FAD dependent oxidoreductase ALFP_2871 PF07063 Domain of unknown function (DUF1338) ALFP_2872 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2872 PF03466 LysR substrate binding domain ALFP_2873 PF00871 Acetokinase family ALFP_2874 PF01515 Phosphate acetyl/butaryl transferase ALFP_2876 PF03466 LysR substrate binding domain ALFP_2876 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2877 PF02678 Pirin ALFP_2877 PF17954 Quercetinase C-terminal cupin domain ALFP_2879 PF17158 Membrane-associated sensor, integral membrane domain ALFP_2879 PF00990 Diguanylate cyclase, GGDEF domain ALFP_2880 PF01425 Amidase ALFP_2882 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase ALFP_2883 PF00166 Chaperonin 10 Kd subunit ALFP_2884 PF00118 TCP-1/cpn60 chaperonin family ALFP_2885 PF01219 Prokaryotic diacylglycerol kinase ALFP_2886 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ALFP_2888 PF02515 CoA-transferase family III ALFP_2889 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_2890 PF09339 IclR helix-turn-helix domain ALFP_2890 PF01614 Bacterial transcriptional regulator ALFP_2891 PF02464 Competence-damaged protein ALFP_2892 PF04608 Phosphatidylglycerophosphatase A ALFP_2893 PF00586 AIR synthase related protein, N-terminal domain ALFP_2893 PF02769 AIR synthase related protein, C-terminal domain ALFP_2894 PF01029 NusB family ALFP_2895 PF00885 6,7-dimethyl-8-ribityllumazine synthase ALFP_2896 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ALFP_2896 PF00925 GTP cyclohydrolase II ALFP_2899 PF02881 SRP54-type protein, helical bundle domain ALFP_2899 PF00448 SRP54-type protein, GTPase domain ALFP_2901 PF01467 Cytidylyltransferase-like ALFP_2902 PF00037 4Fe-4S binding domain ALFP_2905 PF01053 Cys/Met metabolism PLP-dependent enzyme ALFP_2907 PF02423 Ornithine cyclodeaminase/mu-crystallin family ALFP_2908 PF07317 Flagellar regulator YcgR ALFP_2908 PF07238 PilZ domain ALFP_2911 PF00857 Isochorismatase family ALFP_2913 PF00561 alpha/beta hydrolase fold ALFP_2914 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_2914 PF00034 Cytochrome c ALFP_2914 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALFP_2915 PF01799 [2Fe-2S] binding domain ALFP_2915 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_2916 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_2916 PF00034 Cytochrome c ALFP_2916 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALFP_2918 PF00005 ABC transporter ALFP_2919 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_2919 PF00005 ABC transporter ALFP_2921 PF13458 Periplasmic binding protein ALFP_2923 PF01804 Penicillin amidase ALFP_2924 PF17158 Membrane-associated sensor, integral membrane domain ALFP_2924 PF00990 Diguanylate cyclase, GGDEF domain ALFP_2925 PF03466 LysR substrate binding domain ALFP_2925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2926 PF16347 Domain of unknown function (DUF4976) ALFP_2926 PF00884 Sulfatase ALFP_2927 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_2931 PF12706 Beta-lactamase superfamily domain ALFP_2931 PF00753 Metallo-beta-lactamase superfamily ALFP_2932 PF07702 UTRA domain ALFP_2932 PF00392 Bacterial regulatory proteins, gntR family ALFP_2934 PF13091 PLD-like domain ALFP_2936 PF03853 YjeF-related protein N-terminus ALFP_2936 PF01256 Carbohydrate kinase ALFP_2937 PF02625 XdhC and CoxI family ALFP_2937 PF13478 XdhC Rossmann domain ALFP_2938 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_2940 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2941 PF00005 ABC transporter ALFP_2943 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_2943 PF01799 [2Fe-2S] binding domain ALFP_2944 PF03450 CO dehydrogenase flavoprotein C-terminal domain ALFP_2944 PF00941 FAD binding domain in molybdopterin dehydrogenase ALFP_2945 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALFP_2945 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_2946 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_2947 PF00355 Rieske [2Fe-2S] domain ALFP_2948 PF14759 Reductase C-terminal ALFP_2948 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_2949 PF00355 Rieske [2Fe-2S] domain ALFP_2949 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_2952 PF00857 Isochorismatase family ALFP_2954 PF00561 alpha/beta hydrolase fold ALFP_2956 PF01047 MarR family ALFP_2957 PF00005 ABC transporter ALFP_2960 PF07715 TonB-dependent Receptor Plug Domain ALFP_2960 PF00593 TonB dependent receptor ALFP_2961 PF02667 Short chain fatty acid transporter ALFP_2962 PF03466 LysR substrate binding domain ALFP_2962 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2963 PF01979 Amidohydrolase family ALFP_2964 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_2965 PF00929 Exonuclease ALFP_2966 PF00873 AcrB/AcrD/AcrF family ALFP_2967 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALFP_2968 PF00075 RNase H ALFP_2969 PF08241 Methyltransferase domain ALFP_2970 PF00753 Metallo-beta-lactamase superfamily ALFP_2970 PF16123 Hydroxyacylglutathione hydrolase C-terminus ALFP_2971 PF01464 Transglycosylase SLT domain ALFP_2971 PF01476 LysM domain ALFP_2973 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_2974 PF09084 NMT1/THI5 like ALFP_2975 PF03450 CO dehydrogenase flavoprotein C-terminal domain ALFP_2975 PF00941 FAD binding domain in molybdopterin dehydrogenase ALFP_2976 PF01799 [2Fe-2S] binding domain ALFP_2976 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_2977 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_2977 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALFP_2979 PF01047 MarR family ALFP_2980 PF00158 Sigma-54 interaction domain ALFP_2980 PF00072 Response regulator receiver domain ALFP_2980 PF02954 Bacterial regulatory protein, Fis family ALFP_2981 PF02743 Cache domain ALFP_2981 PF00512 His Kinase A (phospho-acceptor) domain ALFP_2981 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2982 PF00375 Sodium:dicarboxylate symporter family ALFP_2990 PF04073 Aminoacyl-tRNA editing domain ALFP_2991 PF01590 GAF domain ALFP_2991 PF02954 Bacterial regulatory protein, Fis family ALFP_2991 PF00158 Sigma-54 interaction domain ALFP_2993 PF04552 Sigma-54, DNA binding domain ALFP_2993 PF04963 Sigma-54 factor, core binding domain ALFP_2993 PF00309 Sigma-54 factor, Activator interacting domain (AID) ALFP_2994 PF00982 Glycosyltransferase family 20 ALFP_2998 PF02358 Trehalose-phosphatase ALFP_3001 PF05995 Cysteine dioxygenase type I ALFP_3002 PF00378 Enoyl-CoA hydratase/isomerase ALFP_3003 PF13607 Succinyl-CoA ligase like flavodoxin domain ALFP_3003 PF13380 CoA binding domain ALFP_3003 PF00583 Acetyltransferase (GNAT) family ALFP_3004 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_3005 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_3005 PF00107 Zinc-binding dehydrogenase ALFP_3006 PF02515 CoA-transferase family III ALFP_3007 PF00378 Enoyl-CoA hydratase/isomerase ALFP_3010 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_3010 PF00107 Zinc-binding dehydrogenase ALFP_3011 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALFP_3012 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3012 PF03466 LysR substrate binding domain ALFP_3014 PF00465 Iron-containing alcohol dehydrogenase ALFP_3015 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3016 PF00005 ABC transporter ALFP_3018 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3018 PF03466 LysR substrate binding domain ALFP_3019 PF00501 AMP-binding enzyme ALFP_3019 PF13193 AMP-binding enzyme C-terminal domain ALFP_3022 PF03466 LysR substrate binding domain ALFP_3022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3025 PF02040 Arsenical pump membrane protein ALFP_3026 PF03960 ArsC family ALFP_3027 PF03358 NADPH-dependent FMN reductase ALFP_3028 PF00486 Transcriptional regulatory protein, C terminal ALFP_3028 PF00072 Response regulator receiver domain ALFP_3029 PF08521 Two-component sensor kinase N-terminal ALFP_3029 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_3029 PF00512 His Kinase A (phospho-acceptor) domain ALFP_3035 PF01464 Transglycosylase SLT domain ALFP_3038 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ALFP_3043 PF04335 VirB8 protein ALFP_3045 PF03743 Bacterial conjugation TrbI-like protein ALFP_3046 PF00437 Type II/IV secretion system protein ALFP_3053 PF18340 DNA relaxase TraI 2B/2B-like domain ALFP_3053 PF18272 single-stranded DNA binding TraI N-terminal subdomain ALFP_3053 PF07057 DNA helicase TraI ALFP_3053 PF08751 TrwC relaxase ALFP_3055 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB ALFP_3056 PF05721 Phytanoyl-CoA dioxygenase (PhyH) ALFP_3058 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3059 PF00005 ABC transporter ALFP_3060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_3060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALFP_3061 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3061 PF03466 LysR substrate binding domain ALFP_3063 PF00589 Phage integrase family ALFP_3064 PF01872 RibD C-terminal domain ALFP_3064 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ALFP_3065 PF03477 ATP cone domain ALFP_3066 PF00464 Serine hydroxymethyltransferase ALFP_3067 PF01161 Phosphatidylethanolamine-binding protein ALFP_3068 PF00579 tRNA synthetases class I (W and Y) ALFP_3068 PF01479 S4 domain ALFP_3069 PF04225 Opacity-associated protein A LysM-like domain ALFP_3069 PF01551 Peptidase family M23 ALFP_3070 PF03702 Anhydro-N-acetylmuramic acid kinase ALFP_3071 PF01521 Iron-sulphur cluster biosynthesis ALFP_3073 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALFP_3073 PF02774 Semialdehyde dehydrogenase, dimerisation domain ALFP_3074 PF00380 Ribosomal protein S9/S16 ALFP_3075 PF00572 Ribosomal protein L13 ALFP_3076 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_3077 PF01523 Putative modulator of DNA gyrase ALFP_3078 PF04751 Protein of unknown function (DUF615) ALFP_3081 PF00690 Cation transporter/ATPase, N-terminus ALFP_3081 PF00689 Cation transporting ATPase, C-terminus ALFP_3082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_3082 PF00512 His Kinase A (phospho-acceptor) domain ALFP_3082 PF08448 PAS fold ALFP_3082 PF13426 PAS domain ALFP_3082 PF00072 Response regulator receiver domain ALFP_3083 PF00196 Bacterial regulatory proteins, luxR family ALFP_3083 PF00072 Response regulator receiver domain ALFP_3084 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALFP_3086 PF01979 Amidohydrolase family ALFP_3087 PF00860 Permease family ALFP_3088 PF12697 Alpha/beta hydrolase family ALFP_3089 PF00355 Rieske [2Fe-2S] domain ALFP_3092 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3092 PF03466 LysR substrate binding domain ALFP_3093 PF07152 YaeQ protein ALFP_3095 PF01037 Lrp/AsnC ligand binding domain ALFP_3098 PF02325 YGGT family ALFP_3099 PF02805 Metal binding domain of Ada ALFP_3099 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALFP_3099 PF12833 Helix-turn-helix domain ALFP_3099 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALFP_3100 PF05433 Glycine zipper 2TM domain ALFP_3101 PF00294 pfkB family carbohydrate kinase ALFP_3104 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALFP_3104 PF02785 Biotin carboxylase C-terminal domain ALFP_3104 PF00289 Biotin carboxylase, N-terminal domain ALFP_3105 PF00364 Biotin-requiring enzyme ALFP_3106 PF01220 Dehydroquinase class II ALFP_3107 PF00578 AhpC/TSA family ALFP_3108 PF01225 Mur ligase family, catalytic domain ALFP_3108 PF02875 Mur ligase family, glutamate ligase domain ALFP_3108 PF08245 Mur ligase middle domain ALFP_3109 PF05728 Uncharacterised protein family (UPF0227) ALFP_3112 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ALFP_3112 PF01488 Shikimate / quinate 5-dehydrogenase ALFP_3112 PF08501 Shikimate dehydrogenase substrate binding domain ALFP_3113 PF00912 Transglycosylase ALFP_3115 PF00149 Calcineurin-like phosphoesterase ALFP_3116 PF01553 Acyltransferase ALFP_3117 PF03652 Holliday junction resolvase ALFP_3118 PF02622 Uncharacterized ACR, COG1678 ALFP_3120 PF02581 Thiamine monophosphate synthase ALFP_3122 PF00202 Aminotransferase class-III ALFP_3123 PF00202 Aminotransferase class-III ALFP_3124 PF00202 Aminotransferase class-III ALFP_3125 PF00501 AMP-binding enzyme ALFP_3125 PF13193 AMP-binding enzyme C-terminal domain ALFP_3126 PF00501 AMP-binding enzyme ALFP_3126 PF13193 AMP-binding enzyme C-terminal domain ALFP_3128 PF01960 ArgJ family ALFP_3130 PF05532 CsbD-like ALFP_3132 PF00829 Ribosomal prokaryotic L21 protein ALFP_3133 PF01016 Ribosomal L27 protein ALFP_3134 PF01926 50S ribosome-binding GTPase ALFP_3134 PF01018 GTP1/OBG ALFP_3135 PF00696 Amino acid kinase family ALFP_3135 PF01472 PUA domain ALFP_3136 PF01266 FAD dependent oxidoreductase ALFP_3140 PF01964 Radical SAM ThiC family ALFP_3140 PF13667 ThiC-associated domain ALFP_3141 PF05736 OprF membrane domain ALFP_3141 PF00691 OmpA family ALFP_3142 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_3143 PF00005 ABC transporter ALFP_3144 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3145 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3146 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_3147 PF00005 ABC transporter ALFP_3148 PF18075 FtsX extracellular domain ALFP_3149 PF14815 NUDIX domain ALFP_3149 PF00633 Helix-hairpin-helix motif ALFP_3149 PF00730 HhH-GPD superfamily base excision DNA repair protein ALFP_3150 PF01098 Cell cycle protein ALFP_3151 PF00905 Penicillin binding protein transpeptidase domain ALFP_3151 PF03717 Penicillin-binding Protein dimerisation domain ALFP_3153 PF04085 rod shape-determining protein MreC ALFP_3155 PF02686 Glu-tRNAGln amidotransferase C subunit ALFP_3156 PF01425 Amidase ALFP_3157 PF02637 GatB domain ALFP_3157 PF02934 GatB/GatE catalytic domain ALFP_3158 PF00156 Phosphoribosyl transferase domain ALFP_3159 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3159 PF03466 LysR substrate binding domain ALFP_3160 PF07681 DoxX ALFP_3161 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ALFP_3163 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_3164 PF07732 Multicopper oxidase ALFP_3164 PF00394 Multicopper oxidase ALFP_3165 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_3166 PF02954 Bacterial regulatory protein, Fis family ALFP_3166 PF00158 Sigma-54 interaction domain ALFP_3169 PF03616 Sodium/glutamate symporter ALFP_3170 PF00348 Polyprenyl synthetase ALFP_3172 PF00293 NUDIX domain ALFP_3173 PF17284 Spermidine synthase tetramerisation domain ALFP_3174 PF02321 Outer membrane efflux protein ALFP_3175 PF00873 AcrB/AcrD/AcrF family ALFP_3176 PF00873 AcrB/AcrD/AcrF family ALFP_3177 PF13533 Biotin-lipoyl like ALFP_3178 PF07072 Cell division protein ALFP_3179 PF01121 Dephospho-CoA kinase ALFP_3181 PF00196 Bacterial regulatory proteins, luxR family ALFP_3181 PF00072 Response regulator receiver domain ALFP_3182 PF02569 Pantoate-beta-alanine ligase ALFP_3183 PF02616 Segregation and condensation protein ScpA ALFP_3185 PF07690 Major Facilitator Superfamily ALFP_3187 PF02574 Homocysteine S-methyltransferase ALFP_3187 PF00809 Pterin binding enzyme ALFP_3187 PF02965 Vitamin B12 dependent methionine synthase, activation domain ALFP_3187 PF02607 B12 binding domain ALFP_3187 PF02310 B12 binding domain ALFP_3188 PF07715 TonB-dependent Receptor Plug Domain ALFP_3188 PF00593 TonB dependent receptor ALFP_3189 PF01497 Periplasmic binding protein ALFP_3190 PF00593 TonB dependent receptor ALFP_3190 PF07660 Secretin and TonB N terminus short domain ALFP_3190 PF07715 TonB-dependent Receptor Plug Domain ALFP_3192 PF04542 Sigma-70 region 2 ALFP_3192 PF08281 Sigma-70, region 4 ALFP_3194 PF13609 Gram-negative porin ALFP_3196 PF01544 CorA-like Mg2+ transporter protein ALFP_3198 PF01544 CorA-like Mg2+ transporter protein ALFP_3202 PF05690 Thiazole biosynthesis protein ThiG ALFP_3203 PF08543 Phosphomethylpyrimidine kinase ALFP_3204 PF01048 Phosphorylase superfamily ALFP_3206 PF02321 Outer membrane efflux protein ALFP_3207 PF01467 Cytidylyltransferase-like ALFP_3209 PF03109 ABC1 family ALFP_3212 PF01209 ubiE/COQ5 methyltransferase family ALFP_3213 PF00072 Response regulator receiver domain ALFP_3213 PF00486 Transcriptional regulatory protein, C terminal ALFP_3214 PF00512 His Kinase A (phospho-acceptor) domain ALFP_3214 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_3214 PF11808 Phosphate regulon sensor protein PhoR ALFP_3214 PF00989 PAS fold ALFP_3216 PF02682 Carboxyltransferase domain, subdomain C and D ALFP_3217 PF02626 Carboxyltransferase domain, subdomain A and B ALFP_3218 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_3218 PF00585 C-terminal regulatory domain of Threonine dehydratase ALFP_3219 PF09335 SNARE associated Golgi protein ALFP_3222 PF03797 Autotransporter beta-domain ALFP_3222 PF12951 Passenger-associated-transport-repeat ALFP_3222 PF00082 Subtilase family ALFP_3223 PF00156 Phosphoribosyl transferase domain ALFP_3225 PF00664 ABC transporter transmembrane region ALFP_3225 PF00005 ABC transporter ALFP_3226 PF00005 ABC transporter ALFP_3226 PF00664 ABC transporter transmembrane region ALFP_3227 PF08173 Membrane bound YbgT-like protein ALFP_3228 PF02322 Cytochrome bd terminal oxidase subunit II ALFP_3229 PF01654 Cytochrome bd terminal oxidase subunit I ALFP_3231 PF00571 CBS domain ALFP_3231 PF01380 SIS domain ALFP_3235 PF00005 ABC transporter ALFP_3236 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ALFP_3237 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ALFP_3238 PF07475 HPr Serine kinase C-terminal domain ALFP_3238 PF02603 HPr Serine kinase N terminus ALFP_3239 PF03668 P-loop ATPase protein family ALFP_3240 PF05036 Sporulation related domain ALFP_3240 PF03330 Lytic transglycolase ALFP_3241 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALFP_3242 PF02021 Uncharacterised protein family UPF0102 ALFP_3243 PF13580 SIS domain ALFP_3245 PF00578 AhpC/TSA family ALFP_3246 PF00696 Amino acid kinase family ALFP_3248 PF00171 Aldehyde dehydrogenase family ALFP_3249 PF12833 Helix-turn-helix domain ALFP_3250 PF00899 ThiF family ALFP_3251 PF03572 Peptidase family S41 ALFP_3251 PF13180 PDZ domain ALFP_3252 PF01551 Peptidase family M23 ALFP_3253 PF00300 Histidine phosphatase superfamily (branch 1) ALFP_3254 PF00581 Rhodanese-like domain ALFP_3255 PF00462 Glutaredoxin ALFP_3256 PF02556 Preprotein translocase subunit SecB ALFP_3257 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ALFP_3257 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ALFP_3258 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_3259 PF00588 SpoU rRNA Methylase family ALFP_3260 PF00156 Phosphoribosyl transferase domain ALFP_3261 PF08241 Methyltransferase domain ALFP_3262 PF07715 TonB-dependent Receptor Plug Domain ALFP_3262 PF00593 TonB dependent receptor ALFP_3263 PF00072 Response regulator receiver domain ALFP_3263 PF00486 Transcriptional regulatory protein, C terminal ALFP_3264 PF00512 His Kinase A (phospho-acceptor) domain ALFP_3264 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_3265 PF00885 6,7-dimethyl-8-ribityllumazine synthase ALFP_3266 PF02954 Bacterial regulatory protein, Fis family ALFP_3266 PF00072 Response regulator receiver domain ALFP_3266 PF00158 Sigma-54 interaction domain ALFP_3267 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_3267 PF00672 HAMP domain ALFP_3269 PF01189 16S rRNA methyltransferase RsmB/F ALFP_3269 PF01029 NusB family ALFP_3270 PF04055 Radical SAM superfamily ALFP_3270 PF00919 Uncharacterized protein family UPF0004 ALFP_3270 PF18693 TRAM domain ALFP_3271 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_3272 PF17645 Arylmalonate decarboxylase ALFP_3273 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3273 PF03466 LysR substrate binding domain ALFP_3275 PF03328 HpcH/HpaI aldolase/citrate lyase family ALFP_3276 PF00005 ABC transporter ALFP_3277 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3282 PF00483 Nucleotidyl transferase ALFP_3282 PF01050 Mannose-6-phosphate isomerase ALFP_3283 PF00535 Glycosyl transferase family 2 ALFP_3285 PF02397 Bacterial sugar transferase ALFP_3287 PF01943 Polysaccharide biosynthesis protein ALFP_3287 PF14667 Polysaccharide biosynthesis C-terminal domain ALFP_3288 PF16363 GDP-mannose 4,6 dehydratase ALFP_3289 PF00483 Nucleotidyl transferase ALFP_3290 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ALFP_3291 PF04321 RmlD substrate binding domain ALFP_3292 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ALFP_3293 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALFP_3293 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALFP_3294 PF00231 ATP synthase ALFP_3295 PF00306 ATP synthase alpha/beta chain, C terminal domain ALFP_3295 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALFP_3295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALFP_3296 PF00213 ATP synthase delta (OSCP) subunit ALFP_3297 PF00430 ATP synthase B/B' CF(0) ALFP_3298 PF00137 ATP synthase subunit C ALFP_3299 PF00119 ATP synthase A chain ALFP_3301 PF00378 Enoyl-CoA hydratase/isomerase ALFP_3304 PF01171 PP-loop family ALFP_3305 PF02441 Flavoprotein ALFP_3306 PF00462 Glutaredoxin ALFP_3307 PF05175 Methyltransferase small domain ALFP_3307 PF17827 PrmC N-terminal domain ALFP_3308 PF00472 RF-1 domain ALFP_3308 PF03462 PCRF domain ALFP_3309 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ALFP_3309 PF01488 Shikimate / quinate 5-dehydrogenase ALFP_3309 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ALFP_3314 PF00398 Ribosomal RNA adenine dimethylase ALFP_3316 PF00593 TonB dependent receptor ALFP_3316 PF07715 TonB-dependent Receptor Plug Domain ALFP_3320 PF00474 Sodium:solute symporter family ALFP_3321 PF00795 Carbon-nitrogen hydrolase ALFP_3323 PF00080 Copper/zinc superoxide dismutase (SODC) ALFP_3325 PF05145 Transition state regulatory protein AbrB ALFP_3326 PF01970 Tripartite tricarboxylate transporter TctA family ALFP_3329 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_3329 PF00672 HAMP domain ALFP_3329 PF00512 His Kinase A (phospho-acceptor) domain ALFP_3330 PF00072 Response regulator receiver domain ALFP_3330 PF00486 Transcriptional regulatory protein, C terminal ALFP_3331 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3331 PF03466 LysR substrate binding domain ALFP_3332 PF00083 Sugar (and other) transporter ALFP_3332 PF08946 Osmosensory transporter coiled coil ALFP_3333 PF00795 Carbon-nitrogen hydrolase ALFP_3337 PF00005 ABC transporter ALFP_3342 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALFP_3342 PF01568 Molydopterin dinucleotide binding domain ALFP_3342 PF00384 Molybdopterin oxidoreductase ALFP_3343 PF01568 Molydopterin dinucleotide binding domain ALFP_3343 PF00384 Molybdopterin oxidoreductase ALFP_3343 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALFP_3344 PF13247 4Fe-4S dicluster domain ALFP_3344 PF12800 4Fe-4S binding domain ALFP_3344 PF09163 Formate dehydrogenase N, transmembrane ALFP_3345 PF01292 Prokaryotic cytochrome b561 ALFP_3346 PF04216 Protein involved in formate dehydrogenase formation ALFP_3347 PF03841 L-seryl-tRNA selenium transferase ALFP_3347 PF12390 Selenocysteine synthase N terminal ALFP_3348 PF00009 Elongation factor Tu GTP binding domain ALFP_3348 PF03144 Elongation factor Tu domain 2 ALFP_3348 PF09106 Elongation factor SelB, winged helix ALFP_3348 PF09107 Elongation factor SelB, winged helix ALFP_3349 PF01381 Helix-turn-helix ALFP_3350 PF00596 Class II Aldolase and Adducin N-terminal domain ALFP_3352 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_3353 PF00593 TonB dependent receptor ALFP_3353 PF07715 TonB-dependent Receptor Plug Domain ALFP_3355 PF00593 TonB dependent receptor ALFP_3355 PF07660 Secretin and TonB N terminus short domain ALFP_3355 PF07715 TonB-dependent Receptor Plug Domain ALFP_3356 PF02769 AIR synthase related protein, C-terminal domain ALFP_3356 PF00586 AIR synthase related protein, N-terminal domain ALFP_3359 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3359 PF03466 LysR substrate binding domain ALFP_3361 PF12801 4Fe-4S binding domain ALFP_3361 PF04205 FMN-binding domain ALFP_3362 PF18793 Nitrous oxide reductase propeller repeat 2 ALFP_3362 PF18764 Nitrous oxide reductase propeller repeat ALFP_3362 PF13473 Cupredoxin-like domain ALFP_3363 PF05048 Periplasmic copper-binding protein (NosD) ALFP_3364 PF00005 ABC transporter ALFP_3365 PF12679 ABC-2 family transporter protein ALFP_3368 PF00342 Phosphoglucose isomerase ALFP_3372 PF00106 short chain dehydrogenase ALFP_3381 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALFP_3381 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALFP_3381 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALFP_3382 PF02350 UDP-N-acetylglucosamine 2-epimerase ALFP_3384 PF00005 ABC transporter ALFP_3385 PF01061 ABC-2 type transporter ALFP_3386 PF02563 Polysaccharide biosynthesis/export protein ALFP_3387 PF00155 Aminotransferase class I and II ALFP_3388 PF00109 Beta-ketoacyl synthase, N-terminal domain ALFP_3388 PF08659 KR domain ALFP_3388 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_3388 PF00698 Acyl transferase domain ALFP_3388 PF00550 Phosphopantetheine attachment site ALFP_3388 PF02801 Beta-ketoacyl synthase, C-terminal domain ALFP_3388 PF14765 Polyketide synthase dehydratase ALFP_3388 PF16197 Ketoacyl-synthetase C-terminal extension ALFP_3390 PF00860 Permease family ALFP_3391 PF00892 EamA-like transporter family ALFP_3392 PF00392 Bacterial regulatory proteins, gntR family ALFP_3392 PF00155 Aminotransferase class I and II ALFP_3393 PF00892 EamA-like transporter family ALFP_3397 PF00691 OmpA family ALFP_3397 PF13488 Glycine zipper ALFP_3414 PF04717 Type VI secretion system, phage-baseplate injector ALFP_3414 PF16671 Actin cross-linking domain ALFP_3416 PF00108 Thiolase, N-terminal domain ALFP_3416 PF02803 Thiolase, C-terminal domain ALFP_3417 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALFP_3417 PF00378 Enoyl-CoA hydratase/isomerase ALFP_3417 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALFP_3420 PF00005 ABC transporter ALFP_3421 PF02405 Permease MlaE ALFP_3422 PF02470 MlaD protein ALFP_3425 PF00005 ABC transporter ALFP_3426 PF01061 ABC-2 type transporter ALFP_3428 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALFP_3429 PF01634 ATP phosphoribosyltransferase ALFP_3430 PF00815 Histidinol dehydrogenase ALFP_3431 PF00475 Imidazoleglycerol-phosphate dehydratase ALFP_3432 PF00117 Glutamine amidotransferase class-I ALFP_3433 PF00977 Histidine biosynthesis protein ALFP_3434 PF00977 Histidine biosynthesis protein ALFP_3435 PF01502 Phosphoribosyl-AMP cyclohydrolase ALFP_3436 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ALFP_3437 PF01230 HIT domain ALFP_3438 PF02416 mttA/Hcf106 family ALFP_3439 PF02416 mttA/Hcf106 family ALFP_3440 PF00902 Sec-independent protein translocase protein (TatC) ALFP_3441 PF13180 PDZ domain ALFP_3442 PF01784 NIF3 (NGG1p interacting factor 3) ALFP_3443 PF01741 Large-conductance mechanosensitive channel, MscL ALFP_3444 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ALFP_3444 PF00355 Rieske [2Fe-2S] domain ALFP_3445 PF00033 Cytochrome b/b6/petB ALFP_3445 PF00032 Cytochrome b(C-terminal)/b6/petD ALFP_3446 PF02167 Cytochrome C1 family ALFP_3447 PF02798 Glutathione S-transferase, N-terminal domain ALFP_3447 PF00043 Glutathione S-transferase, C-terminal domain ALFP_3448 PF04386 Stringent starvation protein B ALFP_3449 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3450 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3454 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_3455 PF01180 Dihydroorotate dehydrogenase ALFP_3458 PF13378 Enolase C-terminal domain-like ALFP_3459 PF00866 Ring hydroxylating beta subunit ALFP_3460 PF00355 Rieske [2Fe-2S] domain ALFP_3460 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_3462 PF01070 FMN-dependent dehydrogenase ALFP_3463 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_3463 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALFP_3465 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_3467 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_3468 PF01370 NAD dependent epimerase/dehydratase family ALFP_3470 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALFP_3470 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALFP_3471 PF00920 Dehydratase family ALFP_3472 PF00392 Bacterial regulatory proteins, gntR family ALFP_3472 PF07729 FCD domain ALFP_3473 PF01037 Lrp/AsnC ligand binding domain ALFP_3473 PF13404 AsnC-type helix-turn-helix domain ALFP_3475 PF03301 Tryptophan 2,3-dioxygenase ALFP_3478 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3478 PF03466 LysR substrate binding domain ALFP_3479 PF02548 Ketopantoate hydroxymethyltransferase ALFP_3480 PF00248 Aldo/keto reductase family ALFP_3481 PF07690 Major Facilitator Superfamily ALFP_3482 PF00330 Aconitase family (aconitate hydratase) ALFP_3482 PF00694 Aconitase C-terminal domain ALFP_3483 PF00990 Diguanylate cyclase, GGDEF domain ALFP_3483 PF00072 Response regulator receiver domain ALFP_3484 PF13847 Methyltransferase domain ALFP_3486 PF00795 Carbon-nitrogen hydrolase ALFP_3489 PF07969 Amidohydrolase family ALFP_3490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3490 PF03466 LysR substrate binding domain ALFP_3491 PF00083 Sugar (and other) transporter ALFP_3491 PF08946 Osmosensory transporter coiled coil ALFP_3494 PF02678 Pirin ALFP_3494 PF05726 Pirin C-terminal cupin domain ALFP_3495 PF00857 Isochorismatase family ALFP_3496 PF02678 Pirin ALFP_3496 PF05726 Pirin C-terminal cupin domain ALFP_3497 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3497 PF03466 LysR substrate binding domain ALFP_3498 PF05532 CsbD-like ALFP_3499 PF04972 BON domain ALFP_3500 PF00743 Flavin-binding monooxygenase-like ALFP_3501 PF00158 Sigma-54 interaction domain ALFP_3501 PF01590 GAF domain ALFP_3501 PF02954 Bacterial regulatory protein, Fis family ALFP_3505 PF07715 TonB-dependent Receptor Plug Domain ALFP_3505 PF07660 Secretin and TonB N terminus short domain ALFP_3505 PF00593 TonB dependent receptor ALFP_3506 PF07715 TonB-dependent Receptor Plug Domain ALFP_3506 PF00593 TonB dependent receptor ALFP_3509 PF08281 Sigma-70, region 4 ALFP_3509 PF04542 Sigma-70 region 2 ALFP_3510 PF01380 SIS domain ALFP_3511 PF01037 Lrp/AsnC ligand binding domain ALFP_3514 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_3514 PF12804 MobA-like NTP transferase domain ALFP_3514 PF14602 Hexapeptide repeat of succinyl-transferase ALFP_3517 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ALFP_3517 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ALFP_3518 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_3521 PF00510 Cytochrome c oxidase subunit III ALFP_3525 PF02628 Cytochrome oxidase assembly protein ALFP_3526 PF01040 UbiA prenyltransferase family ALFP_3527 PF00999 Sodium/hydrogen exchanger family ALFP_3529 PF07715 TonB-dependent Receptor Plug Domain ALFP_3529 PF00593 TonB dependent receptor ALFP_3530 PF04545 Sigma-70, region 4 ALFP_3530 PF04542 Sigma-70 region 2 ALFP_3530 PF00140 Sigma-70 factor, region 1.2 ALFP_3531 PF00756 Putative esterase ALFP_3532 PF00107 Zinc-binding dehydrogenase ALFP_3532 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_3533 PF13091 PLD-like domain ALFP_3534 PF03372 Endonuclease/Exonuclease/phosphatase family ALFP_3535 PF02938 GAD domain ALFP_3535 PF00152 tRNA synthetases class II (D, K and N) ALFP_3535 PF01336 OB-fold nucleic acid binding domain ALFP_3538 PF01040 UbiA prenyltransferase family ALFP_3539 PF00155 Aminotransferase class I and II ALFP_3541 PF01979 Amidohydrolase family ALFP_3543 PF00221 Aromatic amino acid lyase ALFP_3544 PF01175 Urocanase Rossmann-like domain ALFP_3544 PF17391 Urocanase N-terminal domain ALFP_3544 PF17392 Urocanase C-terminal domain ALFP_3545 PF07702 UTRA domain ALFP_3545 PF00392 Bacterial regulatory proteins, gntR family ALFP_3548 PF00797 N-acetyltransferase ALFP_3549 PF00085 Thioredoxin ALFP_3550 PF07690 Major Facilitator Superfamily ALFP_3552 PF13411 MerR HTH family regulatory protein ALFP_3553 PF07690 Major Facilitator Superfamily ALFP_3558 PF02798 Glutathione S-transferase, N-terminal domain ALFP_3558 PF00043 Glutathione S-transferase, C-terminal domain ALFP_3559 PF03466 LysR substrate binding domain ALFP_3559 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3560 PF00970 Oxidoreductase FAD-binding domain ALFP_3560 PF00042 Globin ALFP_3560 PF00175 Oxidoreductase NAD-binding domain ALFP_3561 PF00355 Rieske [2Fe-2S] domain ALFP_3562 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3562 PF03466 LysR substrate binding domain ALFP_3563 PF00155 Aminotransferase class I and II ALFP_3565 PF13350 Tyrosine phosphatase family ALFP_3566 PF10996 Beta-Casp domain ALFP_3566 PF00753 Metallo-beta-lactamase superfamily ALFP_3566 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ALFP_3570 PF02423 Ornithine cyclodeaminase/mu-crystallin family ALFP_3571 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_3571 PF00175 Oxidoreductase NAD-binding domain ALFP_3571 PF00970 Oxidoreductase FAD-binding domain ALFP_3575 PF00970 Oxidoreductase FAD-binding domain ALFP_3575 PF00175 Oxidoreductase NAD-binding domain ALFP_3575 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_3576 PF03928 Haem-degrading ALFP_3577 PF00171 Aldehyde dehydrogenase family ALFP_3582 PF00392 Bacterial regulatory proteins, gntR family ALFP_3582 PF07729 FCD domain ALFP_3583 PF00440 Bacterial regulatory proteins, tetR family ALFP_3584 PF07690 Major Facilitator Superfamily ALFP_3585 PF00210 Ferritin-like domain ALFP_3587 PF07690 Major Facilitator Superfamily ALFP_3588 PF01042 Endoribonuclease L-PSP ALFP_3589 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_3590 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALFP_3591 PF07729 FCD domain ALFP_3591 PF00392 Bacterial regulatory proteins, gntR family ALFP_3592 PF00436 Single-strand binding protein family ALFP_3593 PF07690 Major Facilitator Superfamily ALFP_3594 PF17760 UvrA interaction domain ALFP_3594 PF17755 UvrA DNA-binding domain ALFP_3595 PF13286 Phosphohydrolase-associated domain ALFP_3595 PF01966 HD domain ALFP_3596 PF01761 3-dehydroquinate synthase ALFP_3597 PF01202 Shikimate kinase ALFP_3598 PF17092 Penicillin-binding protein OB-like domain ALFP_3598 PF00905 Penicillin binding protein transpeptidase domain ALFP_3598 PF00912 Transglycosylase ALFP_3600 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ALFP_3600 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ALFP_3601 PF00563 EAL domain ALFP_3601 PF00990 Diguanylate cyclase, GGDEF domain ALFP_3601 PF08448 PAS fold ALFP_3603 PF01578 Cytochrome C assembly protein ALFP_3604 PF05140 ResB-like family ALFP_3605 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_3606 PF01926 50S ribosome-binding GTPase ALFP_3607 PF00490 Delta-aminolevulinic acid dehydratase ALFP_3608 PF11412 Disulphide bond corrector protein DsbC ALFP_3608 PF02683 Cytochrome C biogenesis protein transmembrane region ALFP_3609 PF03091 CutA1 divalent ion tolerance protein ALFP_3610 PF14525 AraC-binding-like domain ALFP_3610 PF12833 Helix-turn-helix domain ALFP_3612 PF00296 Luciferase-like monooxygenase ALFP_3613 PF01196 Ribosomal protein L17 ALFP_3614 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ALFP_3614 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ALFP_3614 PF01000 RNA polymerase Rpb3/RpoA insert domain ALFP_3615 PF00163 Ribosomal protein S4/S9 N-terminal domain ALFP_3615 PF01479 S4 domain ALFP_3616 PF00411 Ribosomal protein S11 ALFP_3617 PF00416 Ribosomal protein S13/S18 ALFP_3618 PF01176 Translation initiation factor 1A / IF-1 ALFP_3619 PF00344 SecY translocase ALFP_3620 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ALFP_3621 PF00327 Ribosomal protein L30p/L7e ALFP_3622 PF00333 Ribosomal protein S5, N-terminal domain ALFP_3622 PF03719 Ribosomal protein S5, C-terminal domain ALFP_3623 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ALFP_3624 PF00347 Ribosomal protein L6 ALFP_3625 PF00410 Ribosomal protein S8 ALFP_3626 PF00253 Ribosomal protein S14p/S29e ALFP_3627 PF00673 ribosomal L5P family C-terminus ALFP_3627 PF00281 Ribosomal protein L5 ALFP_3628 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ALFP_3629 PF00238 Ribosomal protein L14p/L23e ALFP_3634 PF00529 HlyD membrane-fusion protein of T1SS ALFP_3635 PF00664 ABC transporter transmembrane region ALFP_3635 PF00005 ABC transporter ALFP_3635 PF03412 Peptidase C39 family ALFP_3637 PF02321 Outer membrane efflux protein ALFP_3638 PF00171 Aldehyde dehydrogenase family ALFP_3640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_3640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_3640 PF09317 Domain of unknown function (DUF1974) ALFP_3641 PF00108 Thiolase, N-terminal domain ALFP_3641 PF02803 Thiolase, C-terminal domain ALFP_3642 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALFP_3642 PF00378 Enoyl-CoA hydratase/isomerase ALFP_3642 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALFP_3643 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ALFP_3646 PF00501 AMP-binding enzyme ALFP_3646 PF13193 AMP-binding enzyme C-terminal domain ALFP_3647 PF00667 FAD binding domain ALFP_3647 PF00175 Oxidoreductase NAD-binding domain ALFP_3647 PF00258 Flavodoxin ALFP_3648 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ALFP_3648 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ALFP_3649 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALFP_3649 PF14824 Sirohaem biosynthesis protein central ALFP_3649 PF10414 Sirohaem synthase dimerisation region ALFP_3650 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3652 PF00005 ABC transporter ALFP_3655 PF12852 Cupin ALFP_3655 PF12833 Helix-turn-helix domain ALFP_3656 PF00366 Ribosomal protein S17 ALFP_3657 PF00831 Ribosomal L29 protein ALFP_3658 PF00252 Ribosomal protein L16p/L10e ALFP_3659 PF00189 Ribosomal protein S3, C-terminal domain ALFP_3659 PF07650 KH domain ALFP_3660 PF00237 Ribosomal protein L22p/L17e ALFP_3661 PF00203 Ribosomal protein S19 ALFP_3662 PF00181 Ribosomal Proteins L2, RNA binding domain ALFP_3662 PF03947 Ribosomal Proteins L2, C-terminal domain ALFP_3663 PF00276 Ribosomal protein L23 ALFP_3664 PF00573 Ribosomal protein L4/L1 family ALFP_3665 PF00297 Ribosomal protein L3 ALFP_3667 PF00571 CBS domain ALFP_3667 PF00005 ABC transporter ALFP_3668 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3669 PF00338 Ribosomal protein S10p/S20e ALFP_3670 PF00009 Elongation factor Tu GTP binding domain ALFP_3670 PF03144 Elongation factor Tu domain 2 ALFP_3670 PF03143 Elongation factor Tu C-terminal domain ALFP_3671 PF00679 Elongation factor G C-terminus ALFP_3671 PF14492 Elongation Factor G, domain II ALFP_3671 PF03764 Elongation factor G, domain IV ALFP_3671 PF00009 Elongation factor Tu GTP binding domain ALFP_3671 PF03144 Elongation factor Tu domain 2 ALFP_3672 PF00177 Ribosomal protein S7p/S5e ALFP_3673 PF00164 Ribosomal protein S12/S23 ALFP_3674 PF00072 Response regulator receiver domain ALFP_3674 PF00486 Transcriptional regulatory protein, C terminal ALFP_3676 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_3676 PF00512 His Kinase A (phospho-acceptor) domain ALFP_3676 PF00672 HAMP domain ALFP_3679 PF00127 Copper binding proteins, plastocyanin/azurin family ALFP_3680 PF04998 RNA polymerase Rpb1, domain 5 ALFP_3680 PF05000 RNA polymerase Rpb1, domain 4 ALFP_3680 PF04997 RNA polymerase Rpb1, domain 1 ALFP_3680 PF00623 RNA polymerase Rpb1, domain 2 ALFP_3680 PF04983 RNA polymerase Rpb1, domain 3 ALFP_3681 PF10385 RNA polymerase beta subunit external 1 domain ALFP_3681 PF04565 RNA polymerase Rpb2, domain 3 ALFP_3681 PF00562 RNA polymerase Rpb2, domain 6 ALFP_3681 PF04560 RNA polymerase Rpb2, domain 7 ALFP_3681 PF04561 RNA polymerase Rpb2, domain 2 ALFP_3681 PF04563 RNA polymerase beta subunit ALFP_3682 PF00542 Ribosomal protein L7/L12 C-terminal domain ALFP_3682 PF16320 Ribosomal protein L7/L12 dimerisation domain ALFP_3683 PF00466 Ribosomal protein L10 ALFP_3684 PF00687 Ribosomal protein L1p/L10e family ALFP_3685 PF00298 Ribosomal protein L11, RNA binding domain ALFP_3685 PF03946 Ribosomal protein L11, N-terminal domain ALFP_3686 PF02357 Transcription termination factor nusG ALFP_3686 PF00467 KOW motif ALFP_3688 PF03143 Elongation factor Tu C-terminal domain ALFP_3688 PF00009 Elongation factor Tu GTP binding domain ALFP_3688 PF03144 Elongation factor Tu domain 2 ALFP_3690 PF02195 ParB-like nuclease domain ALFP_3690 PF17762 HTH domain found in ParB protein ALFP_3691 PF13614 AAA domain ALFP_3692 PF02527 rRNA small subunit methyltransferase G ALFP_3693 PF13932 GidA associated domain ALFP_3693 PF01134 Glucose inhibited division protein A ALFP_3694 PF00155 Aminotransferase class I and II ALFP_3697 PF00990 Diguanylate cyclase, GGDEF domain ALFP_3698 PF02666 Phosphatidylserine decarboxylase ALFP_3700 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_3702 PF02567 Phenazine biosynthesis-like protein ALFP_3709 PF10396 GTP-binding protein TrmE N-terminus ALFP_3709 PF12631 MnmE helical domain ALFP_3709 PF01926 50S ribosome-binding GTPase ALFP_3711 PF07883 Cupin domain ALFP_3711 PF01381 Helix-turn-helix ALFP_3712 PF01546 Peptidase family M20/M25/M40 ALFP_3712 PF07687 Peptidase dimerisation domain ALFP_3713 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_3714 PF02423 Ornithine cyclodeaminase/mu-crystallin family ALFP_3716 PF13458 Periplasmic binding protein ALFP_3717 PF02653 Branched-chain amino acid transport system / permease component ALFP_3719 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_3719 PF00005 ABC transporter ALFP_3720 PF00005 ABC transporter ALFP_3721 PF00561 alpha/beta hydrolase fold ALFP_3723 PF00857 Isochorismatase family ALFP_3724 PF01494 FAD binding domain ALFP_3728 PF00199 Catalase ALFP_3728 PF06628 Catalase-related immune-responsive ALFP_3729 PF02096 60Kd inner membrane protein ALFP_3729 PF14849 YidC periplasmic domain ALFP_3730 PF01809 Putative membrane protein insertion efficiency factor ALFP_3731 PF00825 Ribonuclease P ALFP_3732 PF00468 Ribosomal protein L34