ALFP_0011	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
ALFP_0020	PWY-723	alkylnitronates degradation
ALFP_0032	PWY-5103	L-isoleucine biosynthesis III
ALFP_0032	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ALFP_0061	PWY-5381	pyridine nucleotide cycling (plants)
ALFP_0061	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
ALFP_0061	PWY-6596	adenosine nucleotides degradation I
ALFP_0061	PWY-6606	guanosine nucleotides degradation II
ALFP_0061	PWY-6607	guanosine nucleotides degradation I
ALFP_0061	PWY-6608	guanosine nucleotides degradation III
ALFP_0061	PWY-7185	UTP and CTP dephosphorylation I
ALFP_0061	PWY-7821	ALFP_0061
ALFP_0074	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
ALFP_0074	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
ALFP_0074	PWY-7717	ALFP_0074
ALFP_0074	PWY-7733	ALFP_0074
ALFP_0074	PWY-7734	ALFP_0074
ALFP_0074	PWY-7765	ALFP_0074
ALFP_0096	PWY-5155	&beta;-alanine biosynthesis III
ALFP_0116	PWY-5381	pyridine nucleotide cycling (plants)
ALFP_0119	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ALFP_0119	PWY-7118	chitin degradation to ethanol
ALFP_0119	PWY-7294	xylose degradation IV
ALFP_0119	PWY-7295	L-arabinose degradation IV
ALFP_0119	PWY-7854	ALFP_0119
ALFP_0121	PWY-6617	adenosine nucleotides degradation III
ALFP_0127	PWY-5101	L-isoleucine biosynthesis II
ALFP_0127	PWY-5103	L-isoleucine biosynthesis III
ALFP_0127	PWY-5104	L-isoleucine biosynthesis IV
ALFP_0127	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
ALFP_0127	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
ALFP_0127	PWY-6389	(<i>S</i>)-acetoin biosynthesis
ALFP_0127	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ALFP_0137	PWY-4381	fatty acid biosynthesis initiation I
ALFP_0137	PWY-5743	3-hydroxypropanoate cycle
ALFP_0137	PWY-5744	glyoxylate assimilation
ALFP_0137	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ALFP_0137	PWY-6722	candicidin biosynthesis
ALFP_0151	PWY-6871	3-methylbutanol biosynthesis
ALFP_0157	PWY-6871	3-methylbutanol biosynthesis
ALFP_0177	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
ALFP_0220	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ALFP_0232	PWY-5074	mevalonate degradation
ALFP_0237	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
ALFP_0245	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
ALFP_0247	PWY-3801	sucrose degradation II (sucrose synthase)
ALFP_0247	PWY-6527	stachyose degradation
ALFP_0247	PWY-7238	sucrose biosynthesis II
ALFP_0247	PWY-7343	UDP-glucose biosynthesis
ALFP_0247	PWY-7817	ALFP_0247
ALFP_0249	PWY-3961	phosphopantothenate biosynthesis II
ALFP_0250	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
ALFP_0250	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
ALFP_0252	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ALFP_0252	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ALFP_0255	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
ALFP_0255	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
ALFP_0257	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
ALFP_0257	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
ALFP_0267	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
ALFP_0267	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ALFP_0267	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ALFP_0268	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
ALFP_0268	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ALFP_0268	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ALFP_0272	PWY-5958	acridone alkaloid biosynthesis
ALFP_0272	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
ALFP_0272	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
ALFP_0273	PWY-5958	acridone alkaloid biosynthesis
ALFP_0273	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
ALFP_0273	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
ALFP_0274	PWY-181	photorespiration
ALFP_0276	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ALFP_0276	PWY-5723	Rubisco shunt
ALFP_0284	PWY-5901	2,3-dihydroxybenzoate biosynthesis
ALFP_0286	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
ALFP_0286	PWY-5901	2,3-dihydroxybenzoate biosynthesis
ALFP_0286	PWY-6406	salicylate biosynthesis I
ALFP_0292	PWY-6012	acyl carrier protein metabolism I
ALFP_0292	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
ALFP_0292	PWY-6289	petrobactin biosynthesis
ALFP_0303	PWY-1361	benzoyl-CoA degradation I (aerobic)
ALFP_0303	PWY-5109	2-methylbutanoate biosynthesis
ALFP_0303	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
ALFP_0303	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
ALFP_0303	PWY-5177	glutaryl-CoA degradation
ALFP_0303	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ALFP_0303	PWY-6435	4-hydroxybenzoate biosynthesis V
ALFP_0303	PWY-6583	pyruvate fermentation to butanol I
ALFP_0303	PWY-6863	pyruvate fermentation to hexanol
ALFP_0303	PWY-6883	pyruvate fermentation to butanol II
ALFP_0303	PWY-6944	androstenedione degradation
ALFP_0303	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
ALFP_0303	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
ALFP_0303	PWY-7007	methyl ketone biosynthesis
ALFP_0303	PWY-7046	4-coumarate degradation (anaerobic)
ALFP_0303	PWY-7094	fatty acid salvage
ALFP_0303	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ALFP_0303	PWY-735	jasmonic acid biosynthesis
ALFP_0303	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
ALFP_0303	PWY-7606	docosahexaenoate biosynthesis III (mammals)
ALFP_0303	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
ALFP_0303	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
ALFP_0303	PWY-7726	ALFP_0303
ALFP_0303	PWY-7778	ALFP_0303
ALFP_0303	PWY-7779	ALFP_0303
ALFP_0304	PWY-5667	CDP-diacylglycerol biosynthesis I
ALFP_0304	PWY-5981	CDP-diacylglycerol biosynthesis III
ALFP_0304	PWY-7902	ALFP_0304
ALFP_0320	PWY-4381	fatty acid biosynthesis initiation I
ALFP_0330	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ALFP_0330	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ALFP_0349	PWY-6967	methylamine degradation I
ALFP_0352	PWY-6967	methylamine degradation I
ALFP_0356	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
ALFP_0356	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
ALFP_0356	PWY-7766	ALFP_0356
ALFP_0365	PWY-723	alkylnitronates degradation
ALFP_0367	PWY-1361	benzoyl-CoA degradation I (aerobic)
ALFP_0367	PWY-5109	2-methylbutanoate biosynthesis
ALFP_0367	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
ALFP_0367	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
ALFP_0367	PWY-5177	glutaryl-CoA degradation
ALFP_0367	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ALFP_0367	PWY-6435	4-hydroxybenzoate biosynthesis V
ALFP_0367	PWY-6583	pyruvate fermentation to butanol I
ALFP_0367	PWY-6863	pyruvate fermentation to hexanol
ALFP_0367	PWY-6883	pyruvate fermentation to butanol II
ALFP_0367	PWY-6944	androstenedione degradation
ALFP_0367	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
ALFP_0367	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
ALFP_0367	PWY-7007	methyl ketone biosynthesis
ALFP_0367	PWY-7046	4-coumarate degradation (anaerobic)
ALFP_0367	PWY-7094	fatty acid salvage
ALFP_0367	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ALFP_0367	PWY-735	jasmonic acid biosynthesis
ALFP_0367	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
ALFP_0367	PWY-7606	docosahexaenoate biosynthesis III (mammals)
ALFP_0367	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
ALFP_0367	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
ALFP_0367	PWY-7726	ALFP_0367
ALFP_0367	PWY-7778	ALFP_0367
ALFP_0367	PWY-7779	ALFP_0367
ALFP_0373	PWY-6840	homoglutathione biosynthesis
ALFP_0373	PWY-7255	ergothioneine biosynthesis I (bacteria)
ALFP_0377	PWY-5344	L-homocysteine biosynthesis
ALFP_0384	PWY-5279	sulfite oxidation II
ALFP_0412	PWY-2941	L-lysine biosynthesis II
ALFP_0412	PWY-5097	L-lysine biosynthesis VI
ALFP_0415	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
ALFP_0415	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
ALFP_0416	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
ALFP_0418	PWY-2201	folate transformations I
ALFP_0418	PWY-3841	folate transformations II
ALFP_0426	PWY-1622	formaldehyde assimilation I (serine pathway)
ALFP_0426	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
ALFP_0426	PWY-5913	TCA cycle VI (obligate autotrophs)
ALFP_0426	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ALFP_0426	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
ALFP_0426	PWY-6549	L-glutamine biosynthesis III
ALFP_0426	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ALFP_0426	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ALFP_0426	PWY-7124	ethylene biosynthesis V (engineered)
ALFP_0427	PWY-5101	L-isoleucine biosynthesis II
ALFP_0427	PWY-5103	L-isoleucine biosynthesis III
ALFP_0427	PWY-5104	L-isoleucine biosynthesis IV
ALFP_0427	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ALFP_0492	PWY-5386	methylglyoxal degradation I
ALFP_0492	PWY-7425	2-chloroacrylate degradation I
ALFP_0500	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
ALFP_0500	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
ALFP_0529	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
ALFP_0566	PWY-5692	allantoin degradation to glyoxylate II
ALFP_0566	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
ALFP_0578	PWY-3841	folate transformations II
ALFP_0578	PWY-6614	tetrahydrofolate biosynthesis
ALFP_0579	PWY-3841	folate transformations II
ALFP_0579	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ALFP_0579	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
ALFP_0579	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ALFP_0579	PWY-7199	pyrimidine deoxyribonucleosides salvage
ALFP_0579	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ALFP_0581	PWY-3781	aerobic respiration I (cytochrome c)
ALFP_0581	PWY-4521	arsenite oxidation I (respiratory)
ALFP_0581	PWY-6692	Fe(II) oxidation
ALFP_0581	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ALFP_0587	PWY-1042	glycolysis IV (plant cytosol)
ALFP_0587	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ALFP_0587	PWY-5484	glycolysis II (from fructose 6-phosphate)
ALFP_0587	PWY-5723	Rubisco shunt
ALFP_0587	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ALFP_0587	PWY-6886	1-butanol autotrophic biosynthesis
ALFP_0587	PWY-6901	superpathway of glucose and xylose degradation
ALFP_0587	PWY-7003	glycerol degradation to butanol
ALFP_0587	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
ALFP_0587	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ALFP_0598	PWY-5694	allantoin degradation to glyoxylate I
ALFP_0598	PWY-5705	allantoin degradation to glyoxylate III
ALFP_0599	PWY-5691	urate degradation to allantoin I
ALFP_0599	PWY-7394	urate degradation to allantoin II
ALFP_0599	PWY-7849	ALFP_0599
ALFP_0601	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ALFP_0601	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ALFP_0601	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ALFP_0608	PWY-6749	CMP-legionaminate biosynthesis I
ALFP_0619	PWY-7560	methylerythritol phosphate pathway II
ALFP_0622	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
ALFP_0634	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
ALFP_0634	PWY-5743	3-hydroxypropanoate cycle
ALFP_0634	PWY-5744	glyoxylate assimilation
ALFP_0634	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ALFP_0634	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ALFP_0634	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ALFP_0634	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ALFP_0636	PWY-5694	allantoin degradation to glyoxylate I
ALFP_0636	PWY-5705	allantoin degradation to glyoxylate III
ALFP_0669	PWY-1881	formate oxidation to CO<sub>2</sub>
ALFP_0669	PWY-5497	purine nucleobases degradation II (anaerobic)
ALFP_0669	PWY-6696	oxalate degradation III
ALFP_0669	PWY-7985	ALFP_0669
ALFP_0673	PWY-6823	molybdenum cofactor biosynthesis
ALFP_0674	PWY-5964	guanylyl molybdenum cofactor biosynthesis
ALFP_0674	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
ALFP_0675	PWY-6823	molybdenum cofactor biosynthesis
ALFP_0677	PWY-6823	molybdenum cofactor biosynthesis
ALFP_0677	PWY-7887	ALFP_0677
ALFP_0679	PWY-6823	molybdenum cofactor biosynthesis
ALFP_0689	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
ALFP_0706	PWY-7799	ALFP_0706
ALFP_0706	PWY-7800	ALFP_0706
ALFP_0710	PWY-6700	queuosine biosynthesis
ALFP_0711	PWY-6700	queuosine biosynthesis
ALFP_0712	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ALFP_0712	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ALFP_0713	PWY-7183	pyrimidine nucleobases salvage I
ALFP_0724	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
ALFP_0728	PWY-5386	methylglyoxal degradation I
ALFP_0729	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
ALFP_0729	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
ALFP_0729	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
ALFP_0729	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
ALFP_0729	PWY-6978	plastoquinol-9 biosynthesis II
ALFP_0734	PWY-1281	sulfoacetaldehyde degradation I
ALFP_0734	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
ALFP_0734	PWY-5482	pyruvate fermentation to acetate II
ALFP_0734	PWY-5485	pyruvate fermentation to acetate IV
ALFP_0734	PWY-5497	purine nucleobases degradation II (anaerobic)
ALFP_0734	PWY-6637	sulfolactate degradation II
ALFP_0734	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ALFP_0738	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ALFP_0738	PWY-5723	Rubisco shunt
ALFP_0738	PWY-6891	thiazole biosynthesis II (Bacillus)
ALFP_0738	PWY-6892	thiazole biosynthesis I (E. coli)
ALFP_0738	PWY-6901	superpathway of glucose and xylose degradation
ALFP_0738	PWY-7560	methylerythritol phosphate pathway II
ALFP_0739	PWY-1042	glycolysis IV (plant cytosol)
ALFP_0739	PWY-5484	glycolysis II (from fructose 6-phosphate)
ALFP_0739	PWY-6901	superpathway of glucose and xylose degradation
ALFP_0739	PWY-7003	glycerol degradation to butanol
ALFP_0740	PWY-1042	glycolysis IV (plant cytosol)
ALFP_0740	PWY-5484	glycolysis II (from fructose 6-phosphate)
ALFP_0740	PWY-6886	1-butanol autotrophic biosynthesis
ALFP_0740	PWY-6901	superpathway of glucose and xylose degradation
ALFP_0740	PWY-7003	glycerol degradation to butanol
ALFP_0746	PWY-1042	glycolysis IV (plant cytosol)
ALFP_0746	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ALFP_0746	PWY-5484	glycolysis II (from fructose 6-phosphate)
ALFP_0746	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ALFP_0746	PWY-7385	1,3-propanediol biosynthesis (engineered)
ALFP_0747	PWY-6123	inosine-5'-phosphate biosynthesis I
ALFP_0747	PWY-6124	inosine-5'-phosphate biosynthesis II
ALFP_0747	PWY-7234	inosine-5'-phosphate biosynthesis III
ALFP_0748	PWY-6123	inosine-5'-phosphate biosynthesis I
ALFP_0748	PWY-7234	inosine-5'-phosphate biosynthesis III
ALFP_0755	PWY-4041	&gamma;-glutamyl cycle
ALFP_0755	PWY-4061	glutathione-mediated detoxification I
ALFP_0755	PWY-5826	hypoglycin biosynthesis
ALFP_0755	PWY-6842	glutathione-mediated detoxification II
ALFP_0755	PWY-7112	4-hydroxy-2-nonenal detoxification
ALFP_0755	PWY-7559	glutathione degradation (DUG pathway - yeast)
ALFP_0756	PWY-2201	folate transformations I
ALFP_0756	PWY-5497	purine nucleobases degradation II (anaerobic)
ALFP_0756	PWY-7909	ALFP_0756
ALFP_0759	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
ALFP_0759	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
ALFP_0760	PWY-7942	ALFP_0760
ALFP_0763	PWY-5958	acridone alkaloid biosynthesis
ALFP_0763	PWY-6543	4-aminobenzoate biosynthesis
ALFP_0763	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
ALFP_0763	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
ALFP_0781	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
ALFP_0781	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ALFP_0781	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ALFP_0781	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ALFP_0781	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ALFP_0781	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ALFP_0781	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
ALFP_0781	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
ALFP_0782	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
ALFP_0782	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ALFP_0782	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ALFP_0782	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ALFP_0782	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ALFP_0782	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ALFP_0782	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
ALFP_0782	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
ALFP_0788	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ALFP_0788	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ALFP_0789	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ALFP_0789	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ALFP_0789	PWY-7953	ALFP_0789
ALFP_0790	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ALFP_0790	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ALFP_0790	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ALFP_0791	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ALFP_0791	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ALFP_0792	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ALFP_0792	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ALFP_0792	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ALFP_0792	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ALFP_0793	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ALFP_0793	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ALFP_0793	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ALFP_0793	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ALFP_0794	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ALFP_0794	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ALFP_0794	PWY-7953	ALFP_0794
ALFP_0795	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ALFP_0795	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ALFP_0795	PWY-7953	ALFP_0795
ALFP_0808	PWY-2301	<i>myo</i>-inositol biosynthesis
ALFP_0808	PWY-4702	phytate degradation I
ALFP_0808	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
ALFP_0809	PWY-7892	ALFP_0809
ALFP_0824	PWY-5386	methylglyoxal degradation I
ALFP_0832	PWY-5392	reductive TCA cycle II
ALFP_0832	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ALFP_0832	PWY-5690	TCA cycle II (plants and fungi)
ALFP_0832	PWY-5913	TCA cycle VI (obligate autotrophs)
ALFP_0832	PWY-6728	methylaspartate cycle
ALFP_0832	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ALFP_0832	PWY-7254	TCA cycle VII (acetate-producers)
ALFP_0832	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ALFP_0839	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ALFP_0839	PWY-6148	tetrahydromethanopterin biosynthesis
ALFP_0839	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
ALFP_0839	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ALFP_0839	PWY-7852	ALFP_0839
ALFP_0839	PWY-7853	ALFP_0839
ALFP_0843	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ALFP_0843	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
ALFP_0843	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
ALFP_0845	PWY-2781	<i>cis</i>-zeatin biosynthesis
ALFP_0852	PWY-1281	sulfoacetaldehyde degradation I
ALFP_0852	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
ALFP_0852	PWY-5482	pyruvate fermentation to acetate II
ALFP_0852	PWY-5485	pyruvate fermentation to acetate IV
ALFP_0852	PWY-5497	purine nucleobases degradation II (anaerobic)
ALFP_0852	PWY-6637	sulfolactate degradation II
ALFP_0852	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ALFP_0855	PWY-2941	L-lysine biosynthesis II
ALFP_0855	PWY-2942	L-lysine biosynthesis III
ALFP_0855	PWY-5097	L-lysine biosynthesis VI
ALFP_0866	PWY-7352	daunorubicin biosynthesis
ALFP_0866	PWY-7354	aclacinomycin biosynthesis
ALFP_0887	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ALFP_0887	PWY-5723	Rubisco shunt
ALFP_0888	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ALFP_0888	PWY-5686	UMP biosynthesis
ALFP_0888	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ALFP_0888	PWY-7790	ALFP_0888
ALFP_0888	PWY-7791	ALFP_0888
ALFP_0889	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ALFP_0889	PWY-5686	UMP biosynthesis
ALFP_0889	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ALFP_0889	PWY-7790	ALFP_0889
ALFP_0889	PWY-7791	ALFP_0889
ALFP_0898	PWY-6614	tetrahydrofolate biosynthesis
ALFP_0899	PWY-6749	CMP-legionaminate biosynthesis I
ALFP_0923	PWY-6803	phosphatidylcholine acyl editing
ALFP_0923	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
ALFP_0923	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
ALFP_0923	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
ALFP_0923	PWY-7783	ALFP_0923
ALFP_0931	PWY-2941	L-lysine biosynthesis II
ALFP_0931	PWY-2942	L-lysine biosynthesis III
ALFP_0931	PWY-5097	L-lysine biosynthesis VI
ALFP_0935	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
ALFP_0950	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ALFP_0950	PWY-6855	chitin degradation I (archaea)
ALFP_0950	PWY-6906	chitin derivatives degradation
ALFP_0960	PWY-5796	malonate decarboxylase activation
ALFP_0961	PWY-5796	malonate decarboxylase activation
ALFP_0962	PWY-6060	malonate degradation II (biotin-dependent)
ALFP_0963	PWY-4381	fatty acid biosynthesis initiation I
ALFP_0963	PWY-5743	3-hydroxypropanoate cycle
ALFP_0963	PWY-5744	glyoxylate assimilation
ALFP_0963	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ALFP_0963	PWY-6060	malonate degradation II (biotin-dependent)
ALFP_0963	PWY-6722	candicidin biosynthesis
ALFP_0965	PWY-5794	malonate degradation I (biotin-independent)
ALFP_0965	PWY-6060	malonate degradation II (biotin-dependent)
ALFP_0966	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
ALFP_0969	PWY-2301	<i>myo</i>-inositol biosynthesis
ALFP_0969	PWY-4702	phytate degradation I
ALFP_0969	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
ALFP_0971	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
ALFP_0979	PWY-4381	fatty acid biosynthesis initiation I
ALFP_0979	PWY-5743	3-hydroxypropanoate cycle
ALFP_0979	PWY-5744	glyoxylate assimilation
ALFP_0979	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ALFP_0979	PWY-6722	candicidin biosynthesis
ALFP_0981	PWY-2941	L-lysine biosynthesis II
ALFP_0981	PWY-2942	L-lysine biosynthesis III
ALFP_0981	PWY-5097	L-lysine biosynthesis VI
ALFP_0981	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
ALFP_0981	PWY-6559	spermidine biosynthesis II
ALFP_0981	PWY-6562	norspermidine biosynthesis
ALFP_0981	PWY-7153	grixazone biosynthesis
ALFP_0981	PWY-7977	ALFP_0981
ALFP_1001	PWY-7731	ALFP_1001
ALFP_1005	PWY-6610	adenine and adenosine salvage IV
ALFP_1026	PWY-5747	2-methylcitrate cycle II
ALFP_1030	PWY-5747	2-methylcitrate cycle II
ALFP_1034	PWY-1622	formaldehyde assimilation I (serine pathway)
ALFP_1034	PWY-5392	reductive TCA cycle II
ALFP_1034	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ALFP_1034	PWY-5690	TCA cycle II (plants and fungi)
ALFP_1034	PWY-5913	TCA cycle VI (obligate autotrophs)
ALFP_1034	PWY-6728	methylaspartate cycle
ALFP_1034	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ALFP_1034	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ALFP_1034	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ALFP_1038	PWY-3781	aerobic respiration I (cytochrome c)
ALFP_1038	PWY-4302	aerobic respiration III (alternative oxidase pathway)
ALFP_1038	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ALFP_1038	PWY-5690	TCA cycle II (plants and fungi)
ALFP_1038	PWY-6728	methylaspartate cycle
ALFP_1038	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ALFP_1038	PWY-7254	TCA cycle VII (acetate-producers)
ALFP_1038	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ALFP_1039	PWY-3781	aerobic respiration I (cytochrome c)
ALFP_1039	PWY-4302	aerobic respiration III (alternative oxidase pathway)
ALFP_1039	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ALFP_1039	PWY-5690	TCA cycle II (plants and fungi)
ALFP_1039	PWY-6728	methylaspartate cycle
ALFP_1039	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ALFP_1039	PWY-7254	TCA cycle VII (acetate-producers)
ALFP_1039	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ALFP_1044	PWY-1281	sulfoacetaldehyde degradation I
ALFP_1044	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
ALFP_1044	PWY-5482	pyruvate fermentation to acetate II
ALFP_1044	PWY-5485	pyruvate fermentation to acetate IV
ALFP_1044	PWY-5497	purine nucleobases degradation II (anaerobic)
ALFP_1044	PWY-6637	sulfolactate degradation II
ALFP_1044	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ALFP_1046	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
ALFP_1047	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
ALFP_1048	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
ALFP_1048	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
ALFP_1068	PWY-5676	acetyl-CoA fermentation to butanoate II
ALFP_1068	PWY-5741	ethylmalonyl-CoA pathway
ALFP_1068	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ALFP_1068	PWY-7948	ALFP_1068
ALFP_1089	PWY-6891	thiazole biosynthesis II (Bacillus)
ALFP_1089	PWY-6892	thiazole biosynthesis I (E. coli)
ALFP_1089	PWY-7560	methylerythritol phosphate pathway II
ALFP_1095	PWY-5350	thiosulfate disproportionation III (rhodanese)
ALFP_1095	PWY-7927	ALFP_1095
ALFP_1098	PWY-6891	thiazole biosynthesis II (Bacillus)
ALFP_1098	PWY-6892	thiazole biosynthesis I (E. coli)
ALFP_1098	PWY-7560	methylerythritol phosphate pathway II
ALFP_1099	PWY-5663	tetrahydrobiopterin biosynthesis I
ALFP_1099	PWY-5664	tetrahydrobiopterin biosynthesis II
ALFP_1099	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ALFP_1099	PWY-6703	preQ<sub>0</sub> biosynthesis
ALFP_1099	PWY-6983	tetrahydrobiopterin biosynthesis III
ALFP_1099	PWY-7442	drosopterin and aurodrosopterin biosynthesis
ALFP_1099	PWY-7852	ALFP_1099
ALFP_1114	PWY-7072	hopanoid biosynthesis (bacteria)
ALFP_1116	PWY-7072	hopanoid biosynthesis (bacteria)
ALFP_1117	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ALFP_1121	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
ALFP_1121	PWY-7676	Kdo8N transfer to lipid IV<sub>A</sub>
ALFP_1127	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ALFP_1127	PWY-5723	Rubisco shunt
ALFP_1133	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ALFP_1178	PWY-4261	glycerol degradation I
ALFP_1179	PWY-4261	glycerol degradation I
ALFP_1179	PWY-6118	glycerol-3-phosphate shuttle
ALFP_1179	PWY-6952	glycerophosphodiester degradation
ALFP_1226	PWY-7980	ALFP_1226
ALFP_1257	PWY-5316	nicotine biosynthesis
ALFP_1257	PWY-5381	pyridine nucleotide cycling (plants)
ALFP_1257	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
ALFP_1257	PWY-7342	superpathway of nicotine biosynthesis
ALFP_1276	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
ALFP_1297	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
ALFP_1305	PWY-3781	aerobic respiration I (cytochrome c)
ALFP_1305	PWY-4521	arsenite oxidation I (respiratory)
ALFP_1305	PWY-6692	Fe(II) oxidation
ALFP_1305	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ALFP_1317	PWY-6832	2-aminoethylphosphonate degradation II
ALFP_1377	PWY-5963	thio-molybdenum cofactor biosynthesis
ALFP_1384	PWY-4983	L-citrulline-nitric oxide cycle
ALFP_1384	PWY-4984	urea cycle
ALFP_1384	PWY-5	canavanine biosynthesis
ALFP_1384	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ALFP_1384	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ALFP_1398	PWY-4981	L-proline biosynthesis II (from arginine)
ALFP_1398	PWY-4984	urea cycle
ALFP_1398	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ALFP_1404	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ALFP_1405	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
ALFP_1411	PWY-6854	ethylene biosynthesis III (microbes)
ALFP_1413	PWY-1361	benzoyl-CoA degradation I (aerobic)
ALFP_1413	PWY-2361	3-oxoadipate degradation
ALFP_1413	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
ALFP_1422	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
ALFP_1422	PWY-6853	ethylene biosynthesis II (microbes)
ALFP_1422	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
ALFP_1434	PWY-7851	ALFP_1434
ALFP_1435	PWY-7884	ALFP_1435
ALFP_1437	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
ALFP_1437	PWY-6167	flavin biosynthesis II (archaea)
ALFP_1437	PWY-6168	flavin biosynthesis III (fungi)
ALFP_1437	PWY-7863	ALFP_1437
ALFP_1438	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ALFP_1438	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
ALFP_1478	PWY-5913	TCA cycle VI (obligate autotrophs)
ALFP_1478	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
ALFP_1478	PWY-6638	sulfolactate degradation III
ALFP_1478	PWY-6642	(<i>R</i>)-cysteate degradation
ALFP_1478	PWY-6643	coenzyme M biosynthesis II
ALFP_1478	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ALFP_1478	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ALFP_1478	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ALFP_1483	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
ALFP_1497	PWY-7805	ALFP_1497
ALFP_1497	PWY-7807	ALFP_1497
ALFP_1506	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ALFP_1506	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
ALFP_1506	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
ALFP_1507	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
ALFP_1507	PWY-6596	adenosine nucleotides degradation I
ALFP_1507	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
ALFP_1512	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
ALFP_1525	PWY-7425	2-chloroacrylate degradation I
ALFP_1530	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
ALFP_1530	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
ALFP_1530	PWY-6936	seleno-amino acid biosynthesis
ALFP_1530	PWY-702	L-methionine biosynthesis II
ALFP_1532	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
ALFP_1532	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
ALFP_1532	PWY-6936	seleno-amino acid biosynthesis
ALFP_1532	PWY-702	L-methionine biosynthesis II
ALFP_1539	PWY-5663	tetrahydrobiopterin biosynthesis I
ALFP_1539	PWY-5664	tetrahydrobiopterin biosynthesis II
ALFP_1539	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ALFP_1539	PWY-6703	preQ<sub>0</sub> biosynthesis
ALFP_1539	PWY-6983	tetrahydrobiopterin biosynthesis III
ALFP_1539	PWY-7442	drosopterin and aurodrosopterin biosynthesis
ALFP_1539	PWY-7852	ALFP_1539
ALFP_1542	PWY-5686	UMP biosynthesis
ALFP_1542	PWY-7790	ALFP_1542
ALFP_1542	PWY-7791	ALFP_1542
ALFP_1549	PWY-6910	hydroxymethylpyrimidine salvage
ALFP_1549	PWY-7356	thiamin salvage IV (yeast)
ALFP_1549	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
ALFP_1558	PWY-5642	2,4-dinitrotoluene degradation
ALFP_1562	PWY-723	alkylnitronates degradation
ALFP_1570	PWY-5386	methylglyoxal degradation I
ALFP_1599	PWY-6871	3-methylbutanol biosynthesis
ALFP_1607	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
ALFP_1608	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
ALFP_1616	PWY-6854	ethylene biosynthesis III (microbes)
ALFP_1626	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ALFP_1633	PWY-5316	nicotine biosynthesis
ALFP_1633	PWY-7342	superpathway of nicotine biosynthesis
ALFP_1634	PWY-5316	nicotine biosynthesis
ALFP_1634	PWY-7342	superpathway of nicotine biosynthesis
ALFP_1652	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
ALFP_1663	PWY-5418	phenol degradation I (aerobic)
ALFP_1663	PWY-6197	chlorinated phenols degradation
ALFP_1667	PWY-5418	phenol degradation I (aerobic)
ALFP_1667	PWY-6197	chlorinated phenols degradation
ALFP_1720	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
ALFP_1735	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ALFP_1735	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ALFP_1735	PWY-7953	ALFP_1735
ALFP_1846	PWY-6167	flavin biosynthesis II (archaea)
ALFP_1846	PWY-6168	flavin biosynthesis III (fungi)
ALFP_1846	PWY-7980	ALFP_1846
ALFP_1865	PWY-5381	pyridine nucleotide cycling (plants)
ALFP_1865	PWY-7761	ALFP_1865
ALFP_1872	PWY-381	nitrate reduction II (assimilatory)
ALFP_1872	PWY-5675	nitrate reduction V (assimilatory)
ALFP_1872	PWY-6549	L-glutamine biosynthesis III
ALFP_1872	PWY-6963	ammonia assimilation cycle I
ALFP_1872	PWY-6964	ammonia assimilation cycle II
ALFP_1890	PWY-3341	L-proline biosynthesis III
ALFP_1890	PWY-4981	L-proline biosynthesis II (from arginine)
ALFP_1890	PWY-6344	L-ornithine degradation II (Stickland reaction)
ALFP_1901	PWY-5392	reductive TCA cycle II
ALFP_1901	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ALFP_1901	PWY-5690	TCA cycle II (plants and fungi)
ALFP_1901	PWY-5913	TCA cycle VI (obligate autotrophs)
ALFP_1901	PWY-6728	methylaspartate cycle
ALFP_1901	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ALFP_1901	PWY-7254	TCA cycle VII (acetate-producers)
ALFP_1901	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ALFP_1917	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
ALFP_1917	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
ALFP_1917	PWY-7717	ALFP_1917
ALFP_1917	PWY-7733	ALFP_1917
ALFP_1917	PWY-7734	ALFP_1917
ALFP_1917	PWY-7765	ALFP_1917
ALFP_1937	PWY-4202	arsenate detoxification I (glutaredoxin)
ALFP_1937	PWY-4621	arsenate detoxification II (glutaredoxin)
ALFP_1955	PWY-5484	glycolysis II (from fructose 6-phosphate)
ALFP_1955	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ALFP_1957	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
ALFP_1962	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ALFP_1962	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ALFP_1962	PWY-5989	stearate biosynthesis II (bacteria and plants)
ALFP_1962	PWY-5994	palmitate biosynthesis I (animals and fungi)
ALFP_1962	PWY-6113	superpathway of mycolate biosynthesis
ALFP_1962	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ALFP_1962	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ALFP_1962	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ALFP_1962	PWY-7663	gondoate biosynthesis (anaerobic)
ALFP_1962	PWY-7664	oleate biosynthesis IV (anaerobic)
ALFP_1962	PWY-7858	ALFP_1962
ALFP_1962	PWYG-321	mycolate biosynthesis
ALFP_1967	PWY-7560	methylerythritol phosphate pathway II
ALFP_1968	PWY-5667	CDP-diacylglycerol biosynthesis I
ALFP_1968	PWY-5981	CDP-diacylglycerol biosynthesis III
ALFP_1968	PWY-7817	ALFP_1968
ALFP_1974	PWY-7799	ALFP_1974
ALFP_1974	PWY-7800	ALFP_1974
ALFP_1979	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ALFP_1979	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
ALFP_1979	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
ALFP_1979	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
ALFP_1982	PWY-2161	folate polyglutamylation
ALFP_1983	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
ALFP_1983	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
ALFP_1985	PWY-6891	thiazole biosynthesis II (Bacillus)
ALFP_1985	PWY-6892	thiazole biosynthesis I (E. coli)
ALFP_1985	PWY-7560	methylerythritol phosphate pathway II
ALFP_1988	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
ALFP_1988	PWY-2201	folate transformations I
ALFP_1988	PWY-3841	folate transformations II
ALFP_1988	PWY-5030	L-histidine degradation III
ALFP_1988	PWY-5497	purine nucleobases degradation II (anaerobic)
ALFP_1988	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
ALFP_1988	PWY-7909	ALFP_1988
ALFP_1993	PWY-6854	ethylene biosynthesis III (microbes)
ALFP_2015	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
ALFP_2025	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
ALFP_2025	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
ALFP_2025	PWY-6148	tetrahydromethanopterin biosynthesis
ALFP_2025	PWY-7742	ALFP_2025
ALFP_2025	PWY-7745	ALFP_2025
ALFP_2025	PWY-7929	ALFP_2025
ALFP_2025	PWY-7934	ALFP_2025
ALFP_2025	PWY-7935	ALFP_2025
ALFP_2030	PWY-4983	L-citrulline-nitric oxide cycle
ALFP_2030	PWY-4984	urea cycle
ALFP_2030	PWY-5	canavanine biosynthesis
ALFP_2030	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ALFP_2030	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ALFP_2038	PWY-5381	pyridine nucleotide cycling (plants)
ALFP_2038	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
ALFP_2038	PWY-6596	adenosine nucleotides degradation I
ALFP_2038	PWY-6606	guanosine nucleotides degradation II
ALFP_2038	PWY-6607	guanosine nucleotides degradation I
ALFP_2038	PWY-6608	guanosine nucleotides degradation III
ALFP_2038	PWY-7185	UTP and CTP dephosphorylation I
ALFP_2038	PWY-7821	ALFP_2038
ALFP_2064	PWY-2941	L-lysine biosynthesis II
ALFP_2064	PWY-2942	L-lysine biosynthesis III
ALFP_2064	PWY-5097	L-lysine biosynthesis VI
ALFP_2064	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ALFP_2064	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
ALFP_2064	PWY-6559	spermidine biosynthesis II
ALFP_2064	PWY-6562	norspermidine biosynthesis
ALFP_2064	PWY-7153	grixazone biosynthesis
ALFP_2064	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ALFP_2064	PWY-7977	ALFP_2064
ALFP_2065	PWY-7396	butanol and isobutanol biosynthesis (engineered)
ALFP_2074	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ALFP_2080	PWY-702	L-methionine biosynthesis II
ALFP_2093	PWY-7805	ALFP_2093
ALFP_2093	PWY-7807	ALFP_2093
ALFP_2096	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ALFP_2096	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
ALFP_2097	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ALFP_2097	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
ALFP_2100	PWY-5392	reductive TCA cycle II
ALFP_2100	PWY-5537	pyruvate fermentation to acetate V
ALFP_2100	PWY-5538	pyruvate fermentation to acetate VI
ALFP_2100	PWY-5690	TCA cycle II (plants and fungi)
ALFP_2100	PWY-5913	TCA cycle VI (obligate autotrophs)
ALFP_2100	PWY-6728	methylaspartate cycle
ALFP_2100	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ALFP_2100	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ALFP_2101	PWY-5392	reductive TCA cycle II
ALFP_2101	PWY-5537	pyruvate fermentation to acetate V
ALFP_2101	PWY-5538	pyruvate fermentation to acetate VI
ALFP_2101	PWY-5690	TCA cycle II (plants and fungi)
ALFP_2101	PWY-5913	TCA cycle VI (obligate autotrophs)
ALFP_2101	PWY-6728	methylaspartate cycle
ALFP_2101	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ALFP_2101	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ALFP_2103	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
ALFP_2103	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
ALFP_2103	PWY-6936	seleno-amino acid biosynthesis
ALFP_2103	PWY-702	L-methionine biosynthesis II
ALFP_2117	PWY-5642	2,4-dinitrotoluene degradation
ALFP_2118	PWY-5686	UMP biosynthesis
ALFP_2118	PWY-7790	ALFP_2118
ALFP_2118	PWY-7791	ALFP_2118
ALFP_2121	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ALFP_2121	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ALFP_2121	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ALFP_2121	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ALFP_2124	PWY-723	alkylnitronates degradation
ALFP_2125	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
ALFP_2153	PWY-5194	siroheme biosynthesis
ALFP_2153	PWY-5196	factor 430 biosynthesis
ALFP_2153	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
ALFP_2161	PWY-5194	siroheme biosynthesis
ALFP_2161	PWY-5196	factor 430 biosynthesis
ALFP_2161	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
ALFP_2175	PWY-5532	adenosine nucleotides degradation IV
ALFP_2175	PWY-5723	Rubisco shunt
ALFP_2203	PWY-4041	&gamma;-glutamyl cycle
ALFP_2203	PWY-7942	ALFP_2203
ALFP_2205	PWY-5497	purine nucleobases degradation II (anaerobic)
ALFP_2205	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
ALFP_2205	PWY-6538	caffeine degradation III (bacteria, via demethylation)
ALFP_2205	PWY-6596	adenosine nucleotides degradation I
ALFP_2205	PWY-6606	guanosine nucleotides degradation II
ALFP_2205	PWY-6607	guanosine nucleotides degradation I
ALFP_2205	PWY-6608	guanosine nucleotides degradation III
ALFP_2205	PWY-6999	theophylline degradation
ALFP_2206	PWY-5497	purine nucleobases degradation II (anaerobic)
ALFP_2206	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
ALFP_2206	PWY-6538	caffeine degradation III (bacteria, via demethylation)
ALFP_2206	PWY-6596	adenosine nucleotides degradation I
ALFP_2206	PWY-6606	guanosine nucleotides degradation II
ALFP_2206	PWY-6607	guanosine nucleotides degradation I
ALFP_2206	PWY-6608	guanosine nucleotides degradation III
ALFP_2206	PWY-6999	theophylline degradation
ALFP_2208	PWY-5497	purine nucleobases degradation II (anaerobic)
ALFP_2208	PWY-6606	guanosine nucleotides degradation II
ALFP_2208	PWY-6608	guanosine nucleotides degradation III
ALFP_2208	PWY-7442	drosopterin and aurodrosopterin biosynthesis
ALFP_2209	PWY-6825	phosphatidylcholine biosynthesis V
ALFP_2216	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ALFP_2230	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
ALFP_2230	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
ALFP_2230	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ALFP_2230	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
ALFP_2230	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
ALFP_2230	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ALFP_2230	PWY-7205	CMP phosphorylation
ALFP_2230	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ALFP_2230	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ALFP_2230	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
ALFP_2230	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ALFP_2230	PWY-7224	purine deoxyribonucleosides salvage
ALFP_2230	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
ALFP_2230	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
ALFP_2232	PWY-6829	tRNA methylation (yeast)
ALFP_2232	PWY-7285	methylwyosine biosynthesis
ALFP_2232	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
ALFP_2239	PWY-5691	urate degradation to allantoin I
ALFP_2239	PWY-7394	urate degradation to allantoin II
ALFP_2239	PWY-7849	ALFP_2239
ALFP_2252	PWY-7980	ALFP_2252
ALFP_2266	PWY-6700	queuosine biosynthesis
ALFP_2275	PWY-3781	aerobic respiration I (cytochrome c)
ALFP_2275	PWY-4521	arsenite oxidation I (respiratory)
ALFP_2275	PWY-6692	Fe(II) oxidation
ALFP_2275	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ALFP_2279	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ALFP_2280	PWY-6700	queuosine biosynthesis
ALFP_2282	PWY-5269	cardiolipin biosynthesis II
ALFP_2282	PWY-5668	cardiolipin biosynthesis I
ALFP_2282	PWY-7817	ALFP_2282
ALFP_2284	PWY-6902	chitin degradation II
ALFP_2284	PWY-7822	ALFP_2284
ALFP_2284	PWY-7883	ALFP_2284
ALFP_2285	PWY-6012	acyl carrier protein metabolism I
ALFP_2285	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
ALFP_2285	PWY-6289	petrobactin biosynthesis
ALFP_2286	PWY-1341	phenylacetate degradation II (anaerobic)
ALFP_2286	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
ALFP_2286	PWY-7716	ALFP_2286
ALFP_2302	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
ALFP_2302	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
ALFP_2311	PWY-6936	seleno-amino acid biosynthesis
ALFP_2319	PWY-7205	CMP phosphorylation
ALFP_2320	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ALFP_2321	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
ALFP_2322	PWY-3461	L-tyrosine biosynthesis II
ALFP_2322	PWY-3462	L-phenylalanine biosynthesis II
ALFP_2322	PWY-6120	L-tyrosine biosynthesis III
ALFP_2322	PWY-6627	salinosporamide A biosynthesis
ALFP_2322	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
ALFP_2322	PWY-7626	bacilysin biosynthesis
ALFP_2326	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
ALFP_2326	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
ALFP_2326	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
ALFP_2326	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
ALFP_2326	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
ALFP_2326	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
ALFP_2326	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
ALFP_2326	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
ALFP_2326	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
ALFP_2326	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
ALFP_2327	PWY-181	photorespiration
ALFP_2380	PWY-5278	sulfite oxidation III
ALFP_2380	PWY-5340	sulfate activation for sulfonation
ALFP_2380	PWY-6683	sulfate reduction III (assimilatory)
ALFP_2380	PWY-6932	selenate reduction
ALFP_2381	PWY-6834	spermidine biosynthesis III
ALFP_2389	PWY-6168	flavin biosynthesis III (fungi)
ALFP_2389	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ALFP_2389	PWY-7991	ALFP_2389
ALFP_2402	PWY-6123	inosine-5'-phosphate biosynthesis I
ALFP_2402	PWY-6124	inosine-5'-phosphate biosynthesis II
ALFP_2402	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ALFP_2402	PWY-7234	inosine-5'-phosphate biosynthesis III
ALFP_2407	PWY-7887	ALFP_2407
ALFP_2407	PWY-7892	ALFP_2407
ALFP_2409	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
ALFP_2409	PWY-6164	3-dehydroquinate biosynthesis I
ALFP_2409	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
ALFP_2430	PWY-6409	pyoverdine I biosynthesis
ALFP_2430	PWY-6562	norspermidine biosynthesis
ALFP_2430	PWY-761	rhizobactin 1021 biosynthesis
ALFP_2430	PWY-7855	ALFP_2430
ALFP_2430	PWY-7988	ALFP_2430
ALFP_2438	PWY-5484	glycolysis II (from fructose 6-phosphate)
ALFP_2445	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ALFP_2445	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
ALFP_2445	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
ALFP_2446	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
ALFP_2447	PWY-5381	pyridine nucleotide cycling (plants)
ALFP_2447	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
ALFP_2447	PWY-7761	ALFP_2447
ALFP_2458	PWY-7560	methylerythritol phosphate pathway II
ALFP_2479	PWY-3341	L-proline biosynthesis III
ALFP_2479	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
ALFP_2487	PWY-1042	glycolysis IV (plant cytosol)
ALFP_2487	PWY-1622	formaldehyde assimilation I (serine pathway)
ALFP_2487	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ALFP_2487	PWY-5484	glycolysis II (from fructose 6-phosphate)
ALFP_2487	PWY-5723	Rubisco shunt
ALFP_2487	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ALFP_2487	PWY-6886	1-butanol autotrophic biosynthesis
ALFP_2487	PWY-6901	superpathway of glucose and xylose degradation
ALFP_2487	PWY-7003	glycerol degradation to butanol
ALFP_2487	PWY-7124	ethylene biosynthesis V (engineered)
ALFP_2487	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
ALFP_2492	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
ALFP_2492	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
ALFP_2494	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
ALFP_2494	PWY-7177	UTP and CTP dephosphorylation II
ALFP_2494	PWY-7185	UTP and CTP dephosphorylation I
ALFP_2501	PWY-5108	L-isoleucine biosynthesis V
ALFP_2501	PWY-5132	humulone biosynthesis
ALFP_2501	PWY-5133	cohumulone biosynthesis
ALFP_2501	PWY-6672	<i>cis</i>-genanyl-CoA degradation
ALFP_2501	PWY-7118	chitin degradation to ethanol
ALFP_2501	PWY-7857	ALFP_2501
ALFP_2507	PWY-5642	2,4-dinitrotoluene degradation
ALFP_2513	PWY-6936	seleno-amino acid biosynthesis
ALFP_2513	PWY-7274	D-cycloserine biosynthesis
ALFP_2513	PWY-7870	ALFP_2513
ALFP_2528	PWY-5367	petroselinate biosynthesis
ALFP_2528	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ALFP_2528	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ALFP_2528	PWY-5989	stearate biosynthesis II (bacteria and plants)
ALFP_2528	PWY-5994	palmitate biosynthesis I (animals and fungi)
ALFP_2528	PWY-6113	superpathway of mycolate biosynthesis
ALFP_2528	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ALFP_2528	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ALFP_2528	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ALFP_2528	PWY-7663	gondoate biosynthesis (anaerobic)
ALFP_2528	PWY-7664	oleate biosynthesis IV (anaerobic)
ALFP_2528	PWY-7858	ALFP_2528
ALFP_2528	PWYG-321	mycolate biosynthesis
ALFP_2529	PWY-4381	fatty acid biosynthesis initiation I
ALFP_2529	PWY-6799	fatty acid biosynthesis (plant mitochondria)
ALFP_2529	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ALFP_2530	PWY-4381	fatty acid biosynthesis initiation I
ALFP_2542	PWY-4381	fatty acid biosynthesis initiation I
ALFP_2542	PWY-5743	3-hydroxypropanoate cycle
ALFP_2542	PWY-5744	glyoxylate assimilation
ALFP_2542	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ALFP_2542	PWY-6722	candicidin biosynthesis
ALFP_2547	PWY-5381	pyridine nucleotide cycling (plants)
ALFP_2571	PWY-7560	methylerythritol phosphate pathway II
ALFP_2572	PWY-7560	methylerythritol phosphate pathway II
ALFP_2575	PWY-723	alkylnitronates degradation
ALFP_2578	PWY-3781	aerobic respiration I (cytochrome c)
ALFP_2578	PWY-4302	aerobic respiration III (alternative oxidase pathway)
ALFP_2578	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
ALFP_2578	PWY-6692	Fe(II) oxidation
ALFP_2594	PWY-1042	glycolysis IV (plant cytosol)
ALFP_2594	PWY-5484	glycolysis II (from fructose 6-phosphate)
ALFP_2594	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ALFP_2594	PWY-7003	glycerol degradation to butanol
ALFP_2599	PWY-5669	phosphatidylethanolamine biosynthesis I
ALFP_2600	PWY-5103	L-isoleucine biosynthesis III
ALFP_2600	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ALFP_2601	PWY-5101	L-isoleucine biosynthesis II
ALFP_2601	PWY-5103	L-isoleucine biosynthesis III
ALFP_2601	PWY-5104	L-isoleucine biosynthesis IV
ALFP_2601	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
ALFP_2601	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
ALFP_2601	PWY-6389	(<i>S</i>)-acetoin biosynthesis
ALFP_2601	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ALFP_2602	PWY-5101	L-isoleucine biosynthesis II
ALFP_2602	PWY-5103	L-isoleucine biosynthesis III
ALFP_2602	PWY-5104	L-isoleucine biosynthesis IV
ALFP_2602	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
ALFP_2602	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
ALFP_2602	PWY-6389	(<i>S</i>)-acetoin biosynthesis
ALFP_2602	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ALFP_2609	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
ALFP_2623	PWY-5913	TCA cycle VI (obligate autotrophs)
ALFP_2623	PWY-6549	L-glutamine biosynthesis III
ALFP_2623	PWY-6728	methylaspartate cycle
ALFP_2623	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ALFP_2623	PWY-7124	ethylene biosynthesis V (engineered)
ALFP_2623	PWY-7254	TCA cycle VII (acetate-producers)
ALFP_2623	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
ALFP_2658	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
ALFP_2658	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
ALFP_2658	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
ALFP_2662	PWY-2941	L-lysine biosynthesis II
ALFP_2662	PWY-2942	L-lysine biosynthesis III
ALFP_2662	PWY-5097	L-lysine biosynthesis VI
ALFP_2670	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ALFP_2670	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ALFP_2670	PWY-7953	ALFP_2670
ALFP_2671	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
ALFP_2671	PWY-7494	choline degradation IV
ALFP_2702	PWY-6690	cinnamate and 3-hydroxycinnamate degradation to 2-oxopent-4-enoate
ALFP_2705	PWY-5162	2-oxopentenoate degradation
ALFP_2705	PWY-5436	L-threonine degradation IV
ALFP_2705	PWY-5480	pyruvate fermentation to ethanol I
ALFP_2705	PWY-6587	pyruvate fermentation to ethanol III
ALFP_2705	PWY-7085	triethylamine degradation
ALFP_2705	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
ALFP_2706	PWY-5162	2-oxopentenoate degradation
ALFP_2710	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
ALFP_2717	PWY-5676	acetyl-CoA fermentation to butanoate II
ALFP_2717	PWY-5741	ethylmalonyl-CoA pathway
ALFP_2717	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ALFP_2717	PWY-7948	ALFP_2717
ALFP_2726	PWY-6703	preQ<sub>0</sub> biosynthesis
ALFP_2727	PWY-1622	formaldehyde assimilation I (serine pathway)
ALFP_2727	PWY-181	photorespiration
ALFP_2727	PWY-2161	folate polyglutamylation
ALFP_2727	PWY-2201	folate transformations I
ALFP_2727	PWY-3661	glycine betaine degradation I
ALFP_2727	PWY-3661-1	glycine betaine degradation II (mammalian)
ALFP_2727	PWY-3841	folate transformations II
ALFP_2727	PWY-5497	purine nucleobases degradation II (anaerobic)
ALFP_2732	PWY-1622	formaldehyde assimilation I (serine pathway)
ALFP_2732	PWY-181	photorespiration
ALFP_2732	PWY-2161	folate polyglutamylation
ALFP_2732	PWY-2201	folate transformations I
ALFP_2732	PWY-3661	glycine betaine degradation I
ALFP_2732	PWY-3661-1	glycine betaine degradation II (mammalian)
ALFP_2732	PWY-3841	folate transformations II
ALFP_2732	PWY-5497	purine nucleobases degradation II (anaerobic)
ALFP_2736	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
ALFP_2736	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
ALFP_2752	PWY-3781	aerobic respiration I (cytochrome c)
ALFP_2752	PWY-4521	arsenite oxidation I (respiratory)
ALFP_2752	PWY-6692	Fe(II) oxidation
ALFP_2752	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ALFP_2757	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ALFP_2757	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ALFP_2761	PWY-7782	ALFP_2761
ALFP_2761	PWY-7783	ALFP_2761
ALFP_2783	PWY-5392	reductive TCA cycle II
ALFP_2783	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ALFP_2783	PWY-5690	TCA cycle II (plants and fungi)
ALFP_2783	PWY-5913	TCA cycle VI (obligate autotrophs)
ALFP_2783	PWY-6728	methylaspartate cycle
ALFP_2783	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ALFP_2783	PWY-7254	TCA cycle VII (acetate-producers)
ALFP_2783	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ALFP_2788	PWY-7801	ALFP_2788
ALFP_2789	PWY-7802	ALFP_2789
ALFP_2790	PWY-5686	UMP biosynthesis
ALFP_2810	PWY-6123	inosine-5'-phosphate biosynthesis I
ALFP_2810	PWY-6124	inosine-5'-phosphate biosynthesis II
ALFP_2810	PWY-7234	inosine-5'-phosphate biosynthesis III
ALFP_2816	PWY-5686	UMP biosynthesis
ALFP_2816	PWY-7790	ALFP_2816
ALFP_2816	PWY-7791	ALFP_2816
ALFP_2857	PWY-2942	L-lysine biosynthesis III
ALFP_2866	PWY-5278	sulfite oxidation III
ALFP_2866	PWY-5340	sulfate activation for sulfonation
ALFP_2866	PWY-6683	sulfate reduction III (assimilatory)
ALFP_2866	PWY-6932	selenate reduction
ALFP_2867	PWY-5278	sulfite oxidation III
ALFP_2867	PWY-5340	sulfate activation for sulfonation
ALFP_2867	PWY-6683	sulfate reduction III (assimilatory)
ALFP_2867	PWY-6932	selenate reduction
ALFP_2873	PWY-5482	pyruvate fermentation to acetate II
ALFP_2873	PWY-5485	pyruvate fermentation to acetate IV
ALFP_2873	PWY-5497	purine nucleobases degradation II (anaerobic)
ALFP_2874	PWY-1281	sulfoacetaldehyde degradation I
ALFP_2874	PWY-5482	pyruvate fermentation to acetate II
ALFP_2874	PWY-5485	pyruvate fermentation to acetate IV
ALFP_2874	PWY-5497	purine nucleobases degradation II (anaerobic)
ALFP_2874	PWY-6637	sulfolactate degradation II
ALFP_2880	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
ALFP_2885	PWY-7039	phosphatidate metabolism, as a signaling molecule
ALFP_2885	PWY-7817	ALFP_2885
ALFP_2886	PWY-5686	UMP biosynthesis
ALFP_2886	PWY-7790	ALFP_2886
ALFP_2886	PWY-7791	ALFP_2886
ALFP_2892	PWY-5269	cardiolipin biosynthesis II
ALFP_2892	PWY-5668	cardiolipin biosynthesis I
ALFP_2892	PWY-7817	ALFP_2892
ALFP_2893	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
ALFP_2893	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
ALFP_2893	PWY-6896	thiamin salvage I
ALFP_2893	PWY-6897	thiamin salvage II
ALFP_2895	PWY-6167	flavin biosynthesis II (archaea)
ALFP_2895	PWY-6168	flavin biosynthesis III (fungi)
ALFP_2896	PWY-6167	flavin biosynthesis II (archaea)
ALFP_2896	PWY-6168	flavin biosynthesis III (fungi)
ALFP_2896	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ALFP_2896	PWY-7991	ALFP_2896
ALFP_2901	PWY-7851	ALFP_2901
ALFP_2903	PWY-5963	thio-molybdenum cofactor biosynthesis
ALFP_2936	PWY-6938	NADH repair
ALFP_2970	PWY-5386	methylglyoxal degradation I
ALFP_2972	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ALFP_2972	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ALFP_2972	PWY-5989	stearate biosynthesis II (bacteria and plants)
ALFP_2972	PWY-6113	superpathway of mycolate biosynthesis
ALFP_2972	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ALFP_2972	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ALFP_2972	PWY-7663	gondoate biosynthesis (anaerobic)
ALFP_2972	PWY-7664	oleate biosynthesis IV (anaerobic)
ALFP_2972	PWY-7858	ALFP_2972
ALFP_2972	PWYG-321	mycolate biosynthesis
ALFP_3001	PWY-5331	taurine biosynthesis
ALFP_3003	PWY-5392	reductive TCA cycle II
ALFP_3003	PWY-5537	pyruvate fermentation to acetate V
ALFP_3003	PWY-5538	pyruvate fermentation to acetate VI
ALFP_3003	PWY-5690	TCA cycle II (plants and fungi)
ALFP_3003	PWY-5913	TCA cycle VI (obligate autotrophs)
ALFP_3003	PWY-6728	methylaspartate cycle
ALFP_3003	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ALFP_3003	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ALFP_3026	PWY-4202	arsenate detoxification I (glutaredoxin)
ALFP_3026	PWY-4621	arsenate detoxification II (glutaredoxin)
ALFP_3064	PWY-7991	ALFP_3064
ALFP_3066	PWY-1622	formaldehyde assimilation I (serine pathway)
ALFP_3066	PWY-181	photorespiration
ALFP_3066	PWY-2161	folate polyglutamylation
ALFP_3066	PWY-2201	folate transformations I
ALFP_3066	PWY-3661	glycine betaine degradation I
ALFP_3066	PWY-3661-1	glycine betaine degradation II (mammalian)
ALFP_3066	PWY-3841	folate transformations II
ALFP_3066	PWY-5497	purine nucleobases degradation II (anaerobic)
ALFP_3070	PWY-7883	ALFP_3070
ALFP_3073	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ALFP_3073	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ALFP_3080	PWY-5392	reductive TCA cycle II
ALFP_3080	PWY-5537	pyruvate fermentation to acetate V
ALFP_3080	PWY-5538	pyruvate fermentation to acetate VI
ALFP_3080	PWY-5690	TCA cycle II (plants and fungi)
ALFP_3080	PWY-5913	TCA cycle VI (obligate autotrophs)
ALFP_3080	PWY-6728	methylaspartate cycle
ALFP_3080	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ALFP_3080	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ALFP_3084	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ALFP_3106	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ALFP_3106	PWY-6416	quinate degradation II
ALFP_3106	PWY-6707	gallate biosynthesis
ALFP_3108	PWY-7883	ALFP_3108
ALFP_3112	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ALFP_3113	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ALFP_3113	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ALFP_3113	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ALFP_3113	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ALFP_3120	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
ALFP_3120	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
ALFP_3120	PWY-6897	thiamin salvage II
ALFP_3120	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
ALFP_3120	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
ALFP_3120	PWY-7356	thiamin salvage IV (yeast)
ALFP_3120	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
ALFP_3121	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
ALFP_3121	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
ALFP_3121	PWY-6897	thiamin salvage II
ALFP_3121	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
ALFP_3121	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
ALFP_3121	PWY-7356	thiamin salvage IV (yeast)
ALFP_3121	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
ALFP_3128	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ALFP_3135	PWY-3341	L-proline biosynthesis III
ALFP_3135	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
ALFP_3140	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
ALFP_3150	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ALFP_3150	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ALFP_3150	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ALFP_3150	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ALFP_3151	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ALFP_3151	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ALFP_3156	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
ALFP_3158	PWY-5686	UMP biosynthesis
ALFP_3158	PWY-7790	ALFP_3158
ALFP_3158	PWY-7791	ALFP_3158
ALFP_3164	PWY-6523	nitrite-dependent anaerobic methane oxidation
ALFP_3164	PWY-6748	nitrate reduction VII (denitrification)
ALFP_3164	PWY-7084	nitrifier denitrification
ALFP_3165	PWY-3781	aerobic respiration I (cytochrome c)
ALFP_3165	PWY-4521	arsenite oxidation I (respiratory)
ALFP_3165	PWY-6692	Fe(II) oxidation
ALFP_3165	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ALFP_3172	PWY-6502	oxidized GTP and dGTP detoxification
ALFP_3172	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
ALFP_3172	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
ALFP_3172	PWY-6897	thiamin salvage II
ALFP_3172	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
ALFP_3172	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
ALFP_3172	PWY-7356	thiamin salvage IV (yeast)
ALFP_3172	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
ALFP_3179	PWY-7851	ALFP_3179
ALFP_3187	PWY-2201	folate transformations I
ALFP_3187	PWY-3841	folate transformations II
ALFP_3187	PWY-7977	ALFP_3187
ALFP_3202	PWY-6891	thiazole biosynthesis II (Bacillus)
ALFP_3202	PWY-6892	thiazole biosynthesis I (E. coli)
ALFP_3203	PWY-6910	hydroxymethylpyrimidine salvage
ALFP_3203	PWY-7356	thiamin salvage IV (yeast)
ALFP_3203	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
ALFP_3204	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
ALFP_3204	PWY-6153	autoinducer AI-2 biosynthesis I
ALFP_3204	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
ALFP_3212	PWY-5839	menaquinol-7 biosynthesis
ALFP_3212	PWY-5844	menaquinol-9 biosynthesis
ALFP_3212	PWY-5849	menaquinol-6 biosynthesis
ALFP_3212	PWY-5890	menaquinol-10 biosynthesis
ALFP_3212	PWY-5891	menaquinol-11 biosynthesis
ALFP_3212	PWY-5892	menaquinol-12 biosynthesis
ALFP_3212	PWY-5895	menaquinol-13 biosynthesis
ALFP_3216	PWY-4041	&gamma;-glutamyl cycle
ALFP_3216	PWY-7942	ALFP_3216
ALFP_3221	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
ALFP_3221	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
ALFP_3223	PWY-6605	adenine and adenosine salvage II
ALFP_3223	PWY-6610	adenine and adenosine salvage IV
ALFP_3223	PWY-7805	ALFP_3223
ALFP_3223	PWY-7807	ALFP_3223
ALFP_3227	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
ALFP_3232	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
ALFP_3232	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
ALFP_3243	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
ALFP_3246	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ALFP_3246	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ALFP_3253	PWY-1622	formaldehyde assimilation I (serine pathway)
ALFP_3253	PWY-5484	glycolysis II (from fructose 6-phosphate)
ALFP_3257	PWY-5667	CDP-diacylglycerol biosynthesis I
ALFP_3257	PWY-5981	CDP-diacylglycerol biosynthesis III
ALFP_3257	PWY-7902	ALFP_3257
ALFP_3265	PWY-6167	flavin biosynthesis II (archaea)
ALFP_3265	PWY-6168	flavin biosynthesis III (fungi)
ALFP_3272	PWY-5033	nicotinate degradation II
ALFP_3272	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ALFP_3272	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ALFP_3272	PWY-6993	nicotine degradation II (pyrrolidine pathway)
ALFP_3272	PWY-7128	nicotine degradation III (VPP pathway)
ALFP_3272	PWY-722	nicotinate degradation I
ALFP_3282	PWY-5659	GDP-mannose biosynthesis
ALFP_3282	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
ALFP_3288	PWY-3221	dTDP-L-rhamnose biosynthesis II
ALFP_3288	PWY-6808	dTDP-D-forosamine biosynthesis
ALFP_3288	PWY-6942	dTDP-D-desosamine biosynthesis
ALFP_3288	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
ALFP_3288	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
ALFP_3288	PWY-6974	dTDP-L-olivose biosynthesis
ALFP_3288	PWY-6976	dTDP-L-mycarose biosynthesis
ALFP_3288	PWY-7104	dTDP-L-megosamine biosynthesis
ALFP_3288	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
ALFP_3288	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
ALFP_3288	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
ALFP_3288	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
ALFP_3288	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
ALFP_3288	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
ALFP_3288	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
ALFP_3288	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
ALFP_3288	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
ALFP_3288	PWY-7688	ALFP_3288
ALFP_3288	PWY-7814	ALFP_3288
ALFP_3289	PWY-3221	dTDP-L-rhamnose biosynthesis II
ALFP_3289	PWY-6808	dTDP-D-forosamine biosynthesis
ALFP_3289	PWY-6942	dTDP-D-desosamine biosynthesis
ALFP_3289	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
ALFP_3289	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
ALFP_3289	PWY-6974	dTDP-L-olivose biosynthesis
ALFP_3289	PWY-6976	dTDP-L-mycarose biosynthesis
ALFP_3289	PWY-7104	dTDP-L-megosamine biosynthesis
ALFP_3289	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
ALFP_3289	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
ALFP_3289	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
ALFP_3289	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
ALFP_3289	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
ALFP_3289	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
ALFP_3289	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
ALFP_3289	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
ALFP_3289	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
ALFP_3289	PWY-7688	ALFP_3289
ALFP_3289	PWY-7814	ALFP_3289
ALFP_3293	PWY-7980	ALFP_3293
ALFP_3295	PWY-7980	ALFP_3295
ALFP_3303	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ALFP_3303	PWY-6148	tetrahydromethanopterin biosynthesis
ALFP_3303	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
ALFP_3303	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ALFP_3309	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ALFP_3323	PWY-6854	ethylene biosynthesis III (microbes)
ALFP_3356	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
ALFP_3362	PWY-6748	nitrate reduction VII (denitrification)
ALFP_3362	PWY-7084	nitrifier denitrification
ALFP_3368	PWY-3801	sucrose degradation II (sucrose synthase)
ALFP_3368	PWY-5054	sorbitol biosynthesis I
ALFP_3368	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
ALFP_3368	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ALFP_3368	PWY-5659	GDP-mannose biosynthesis
ALFP_3368	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ALFP_3368	PWY-621	sucrose degradation III (sucrose invertase)
ALFP_3368	PWY-622	starch biosynthesis
ALFP_3368	PWY-6981	chitin biosynthesis
ALFP_3368	PWY-6992	1,5-anhydrofructose degradation
ALFP_3368	PWY-7238	sucrose biosynthesis II
ALFP_3368	PWY-7347	sucrose biosynthesis III
ALFP_3368	PWY-7385	1,3-propanediol biosynthesis (engineered)
ALFP_3417	PWY-1361	benzoyl-CoA degradation I (aerobic)
ALFP_3417	PWY-5109	2-methylbutanoate biosynthesis
ALFP_3417	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
ALFP_3417	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
ALFP_3417	PWY-5177	glutaryl-CoA degradation
ALFP_3417	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ALFP_3417	PWY-6435	4-hydroxybenzoate biosynthesis V
ALFP_3417	PWY-6583	pyruvate fermentation to butanol I
ALFP_3417	PWY-6863	pyruvate fermentation to hexanol
ALFP_3417	PWY-6883	pyruvate fermentation to butanol II
ALFP_3417	PWY-6944	androstenedione degradation
ALFP_3417	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
ALFP_3417	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
ALFP_3417	PWY-7007	methyl ketone biosynthesis
ALFP_3417	PWY-7046	4-coumarate degradation (anaerobic)
ALFP_3417	PWY-7094	fatty acid salvage
ALFP_3417	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ALFP_3417	PWY-735	jasmonic acid biosynthesis
ALFP_3417	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
ALFP_3417	PWY-7606	docosahexaenoate biosynthesis III (mammals)
ALFP_3417	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
ALFP_3417	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
ALFP_3417	PWY-7726	ALFP_3417
ALFP_3417	PWY-7778	ALFP_3417
ALFP_3417	PWY-7779	ALFP_3417
ALFP_3428	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ALFP_3428	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ALFP_3428	PWY-7953	ALFP_3428
ALFP_3444	PWY-3781	aerobic respiration I (cytochrome c)
ALFP_3444	PWY-6692	Fe(II) oxidation
ALFP_3444	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
ALFP_3444	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ALFP_3471	PWY-5101	L-isoleucine biosynthesis II
ALFP_3471	PWY-5103	L-isoleucine biosynthesis III
ALFP_3471	PWY-5104	L-isoleucine biosynthesis IV
ALFP_3471	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ALFP_3479	PWY-6654	phosphopantothenate biosynthesis III
ALFP_3492	PWY-5367	petroselinate biosynthesis
ALFP_3492	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ALFP_3492	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ALFP_3492	PWY-5989	stearate biosynthesis II (bacteria and plants)
ALFP_3492	PWY-5994	palmitate biosynthesis I (animals and fungi)
ALFP_3492	PWY-6113	superpathway of mycolate biosynthesis
ALFP_3492	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ALFP_3492	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ALFP_3492	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ALFP_3492	PWY-7663	gondoate biosynthesis (anaerobic)
ALFP_3492	PWY-7664	oleate biosynthesis IV (anaerobic)
ALFP_3492	PWY-7858	ALFP_3492
ALFP_3492	PWYG-321	mycolate biosynthesis
ALFP_3510	PWY-6749	CMP-legionaminate biosynthesis I
ALFP_3514	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ALFP_3518	PWY-3781	aerobic respiration I (cytochrome c)
ALFP_3518	PWY-4521	arsenite oxidation I (respiratory)
ALFP_3518	PWY-6692	Fe(II) oxidation
ALFP_3518	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ALFP_3531	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
ALFP_3532	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
ALFP_3532	PWY-3162	L-tryptophan degradation V (side chain pathway)
ALFP_3532	PWY-5057	L-valine degradation II
ALFP_3532	PWY-5076	L-leucine degradation III
ALFP_3532	PWY-5078	L-isoleucine degradation II
ALFP_3532	PWY-5079	L-phenylalanine degradation III
ALFP_3532	PWY-5082	L-methionine degradation III
ALFP_3532	PWY-5480	pyruvate fermentation to ethanol I
ALFP_3532	PWY-5486	pyruvate fermentation to ethanol II
ALFP_3532	PWY-5751	phenylethanol biosynthesis
ALFP_3532	PWY-6313	serotonin degradation
ALFP_3532	PWY-6333	acetaldehyde biosynthesis I
ALFP_3532	PWY-6342	noradrenaline and adrenaline degradation
ALFP_3532	PWY-6587	pyruvate fermentation to ethanol III
ALFP_3532	PWY-6802	salidroside biosynthesis
ALFP_3532	PWY-6871	3-methylbutanol biosynthesis
ALFP_3532	PWY-7013	L-1,2-propanediol degradation
ALFP_3532	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ALFP_3532	PWY-7118	chitin degradation to ethanol
ALFP_3532	PWY-7396	butanol and isobutanol biosynthesis (engineered)
ALFP_3532	PWY-7798	ALFP_3532
ALFP_3541	PWY-5028	L-histidine degradation II
ALFP_3541	PWY-5030	L-histidine degradation III
ALFP_3543	PWY-5028	L-histidine degradation II
ALFP_3543	PWY-5030	L-histidine degradation III
ALFP_3544	PWY-5028	L-histidine degradation II
ALFP_3544	PWY-5030	L-histidine degradation III
ALFP_3563	PWY-5913	TCA cycle VI (obligate autotrophs)
ALFP_3563	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
ALFP_3563	PWY-6638	sulfolactate degradation III
ALFP_3563	PWY-6642	(<i>R</i>)-cysteate degradation
ALFP_3563	PWY-6643	coenzyme M biosynthesis II
ALFP_3563	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ALFP_3563	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ALFP_3563	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ALFP_3596	PWY-6164	3-dehydroquinate biosynthesis I
ALFP_3597	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ALFP_3598	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ALFP_3598	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ALFP_3598	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ALFP_3598	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ALFP_3600	PWY-2941	L-lysine biosynthesis II
ALFP_3600	PWY-2942	L-lysine biosynthesis III
ALFP_3600	PWY-5097	L-lysine biosynthesis VI
ALFP_3607	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ALFP_3607	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
ALFP_3640	PWY-7094	fatty acid salvage
ALFP_3640	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
ALFP_3642	PWY-1361	benzoyl-CoA degradation I (aerobic)
ALFP_3642	PWY-5109	2-methylbutanoate biosynthesis
ALFP_3642	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
ALFP_3642	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
ALFP_3642	PWY-5177	glutaryl-CoA degradation
ALFP_3642	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ALFP_3642	PWY-6435	4-hydroxybenzoate biosynthesis V
ALFP_3642	PWY-6583	pyruvate fermentation to butanol I
ALFP_3642	PWY-6863	pyruvate fermentation to hexanol
ALFP_3642	PWY-6883	pyruvate fermentation to butanol II
ALFP_3642	PWY-6944	androstenedione degradation
ALFP_3642	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
ALFP_3642	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
ALFP_3642	PWY-7007	methyl ketone biosynthesis
ALFP_3642	PWY-7046	4-coumarate degradation (anaerobic)
ALFP_3642	PWY-7094	fatty acid salvage
ALFP_3642	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ALFP_3642	PWY-735	jasmonic acid biosynthesis
ALFP_3642	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
ALFP_3642	PWY-7606	docosahexaenoate biosynthesis III (mammals)
ALFP_3642	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
ALFP_3642	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
ALFP_3642	PWY-7726	ALFP_3642
ALFP_3642	PWY-7778	ALFP_3642
ALFP_3642	PWY-7779	ALFP_3642
ALFP_3645	PWY-2002	isoflavonoid biosynthesis I
ALFP_3645	PWY-5059	pinobanksin biosynthesis
ALFP_3645	PWY-6325	echinatin biosynthesis
ALFP_3645	PWY-6787	flavonoid biosynthesis (in equisetum)
ALFP_3645	PWY-7397	naringenin biosynthesis (engineered)
ALFP_3645	PWY-7897	ALFP_3645
ALFP_3647	PWY-6683	sulfate reduction III (assimilatory)
ALFP_3648	PWY-6683	sulfate reduction III (assimilatory)
ALFP_3649	PWY-5194	siroheme biosynthesis
ALFP_3649	PWY-5196	factor 430 biosynthesis
ALFP_3649	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
ALFP_3698	PWY-5669	phosphatidylethanolamine biosynthesis I
ALFP_3712	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
