ALFP_0001 PF00308 Bacterial dnaA protein ALFP_0001 PF08299 Bacterial dnaA protein helix-turn-helix ALFP_0001 PF11638 DnaA N-terminal domain ALFP_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain ALFP_0002 PF02767 DNA polymerase III beta subunit, central domain ALFP_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain ALFP_0003 PF00204 DNA gyrase B ALFP_0003 PF00986 DNA gyrase B subunit, carboxyl terminus ALFP_0003 PF01751 Toprim domain ALFP_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_0004 PF00849 RNA pseudouridylate synthase ALFP_0004 PF01479 S4 domain ALFP_0005 PF00583 Acetyltransferase (GNAT) family ALFP_0006 PF04290 ALFP_0006 ALFP_0007 PF06808 ALFP_0007 ALFP_0008 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0009 PF07859 alpha/beta hydrolase fold ALFP_0011 PF04828 Glutathione-dependent formaldehyde-activating enzyme ALFP_0012 PF13609 Gram-negative porin ALFP_0013 PF00701 Dihydrodipicolinate synthetase family ALFP_0014 PF01042 Endoribonuclease L-PSP ALFP_0014 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_0015 PF01381 Helix-turn-helix ALFP_0015 PF07883 Cupin domain ALFP_0016 PF01266 FAD dependent oxidoreductase ALFP_0017 PF13510 2Fe-2S iron-sulfur cluster binding domain ALFP_0018 PF04324 BFD-like [2Fe-2S] binding domain ALFP_0018 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_0019 PF00378 Enoyl-CoA hydratase/isomerase family ALFP_0020 PF03060 Nitronate monooxygenase ALFP_0021 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0022 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_0022 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_0022 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_0023 PF01614 Bacterial transcriptional regulator ALFP_0023 PF09339 IclR helix-turn-helix domain ALFP_0024 PF02515 CoA-transferase family III ALFP_0025 PF00107 Zinc-binding dehydrogenase ALFP_0025 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_0026 PF02515 CoA-transferase family III ALFP_0027 PF00392 Bacterial regulatory proteins, gntR family ALFP_0027 PF07729 FCD domain ALFP_0028 PF06808 ALFP_0028 ALFP_0029 PF04290 ALFP_0029 ALFP_0030 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_0030 PF00175 Oxidoreductase NAD-binding domain ALFP_0031 PF00355 Rieske [2Fe-2S] domain ALFP_0032 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ALFP_0032 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain ALFP_0033 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0033 PF03466 LysR substrate binding domain ALFP_0035 PF00596 Class II Aldolase and Adducin N-terminal domain ALFP_0036 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0037 PF13458 Periplasmic binding protein ALFP_0038 PF02653 ALFP_0038 ALFP_0039 PF02653 ALFP_0039 ALFP_0040 PF00005 ABC transporter ALFP_0040 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_0041 PF00501 AMP-binding enzyme ALFP_0041 PF13193 AMP-binding enzyme C-terminal domain ALFP_0043 PF12697 Alpha/beta hydrolase family ALFP_0044 PF00392 Bacterial regulatory proteins, gntR family ALFP_0044 PF07702 UTRA domain ALFP_0045 PF00378 Enoyl-CoA hydratase/isomerase family ALFP_0047 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0048 PF00392 Bacterial regulatory proteins, gntR family ALFP_0048 PF07729 FCD domain ALFP_0050 PF00892 EamA-like transporter family ALFP_0051 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0051 PF03466 LysR substrate binding domain ALFP_0052 PF13343 Bacterial extracellular solute-binding protein ALFP_0053 PF00005 ABC transporter ALFP_0053 PF08402 TOBE domain ALFP_0054 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0055 PF00155 Aminotransferase class I and II ALFP_0056 PF13714 Phosphoenolpyruvate phosphomutase ALFP_0057 PF02492 CobW/HypB/UreG, nucleotide-binding domain ALFP_0057 PF07683 Cobalamin synthesis protein cobW C-terminal domain ALFP_0058 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0059 PF03992 Antibiotic biosynthesis monooxygenase ALFP_0059 PF07690 Major Facilitator Superfamily ALFP_0060 PF13410 Glutathione S-transferase, C-terminal domain ALFP_0060 PF13417 Glutathione S-transferase, N-terminal domain ALFP_0061 PF06189 ALFP_0061 ALFP_0062 PF01614 Bacterial transcriptional regulator ALFP_0063 PF00884 Sulfatase ALFP_0063 PF16347 ALFP_0063 ALFP_0064 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0065 PF01047 MarR family ALFP_0066 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALFP_0067 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ALFP_0068 PF01047 MarR family ALFP_0069 PF03061 Thioesterase superfamily ALFP_0070 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALFP_0071 PF07883 Cupin domain ALFP_0072 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALFP_0073 PF00795 Carbon-nitrogen hydrolase ALFP_0074 PF04199 Putative cyclase ALFP_0075 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_0075 PF00175 Oxidoreductase NAD-binding domain ALFP_0075 PF00970 Oxidoreductase FAD-binding domain ALFP_0076 PF00355 Rieske [2Fe-2S] domain ALFP_0076 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_0077 PF00866 Ring hydroxylating beta subunit ALFP_0078 PF00501 AMP-binding enzyme ALFP_0078 PF13193 AMP-binding enzyme C-terminal domain ALFP_0080 PF01796 ALFP_0080 ALFP_0080 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) ALFP_0081 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_0082 PF04290 ALFP_0082 ALFP_0083 PF06808 ALFP_0083 ALFP_0084 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0085 PF01548 ALFP_0085 ALFP_0085 PF02371 ALFP_0085 ALFP_0087 PF13557 ALFP_0087 ALFP_0088 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_0090 PF01613 Flavin reductase like domain ALFP_0091 PF13450 NAD(P)-binding Rossmann-like domain ALFP_0092 PF12833 Helix-turn-helix domain ALFP_0092 PF14525 ALFP_0092 ALFP_0093 PF01613 Flavin reductase like domain ALFP_0094 PF00005 ABC transporter ALFP_0096 PF02261 Aspartate decarboxylase ALFP_0097 PF00593 TonB dependent receptor ALFP_0097 PF07715 TonB-dependent Receptor Plug Domain ALFP_0098 PF04773 FecR protein ALFP_0098 PF16220 ALFP_0098 ALFP_0099 PF04542 Sigma-70 region 2 ALFP_0099 PF08281 Sigma-70, region 4 ALFP_0100 PF00005 ABC transporter ALFP_0100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALFP_0101 PF00005 ABC transporter ALFP_0101 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALFP_0102 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0103 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0104 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALFP_0105 PF00817 impB/mucB/samB family ALFP_0105 PF11799 impB/mucB/samB family C-terminal domain ALFP_0107 PF00202 Aminotransferase class-III ALFP_0109 PF00296 Luciferase-like monooxygenase ALFP_0110 PF03358 NADPH-dependent FMN reductase ALFP_0111 PF12973 ChrR Cupin-like domain ALFP_0112 PF12833 Helix-turn-helix domain ALFP_0112 PF14525 ALFP_0112 ALFP_0113 PF01925 ALFP_0113 ALFP_0114 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0114 PF03466 LysR substrate binding domain ALFP_0116 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ALFP_0116 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ALFP_0117 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0118 PF13531 Bacterial extracellular solute-binding protein ALFP_0119 PF01274 Malate synthase ALFP_0121 PF01048 Phosphorylase superfamily ALFP_0121 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ALFP_0122 PF03061 Thioesterase superfamily ALFP_0123 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0124 PF06808 ALFP_0124 ALFP_0125 PF04290 ALFP_0125 ALFP_0126 PF00856 SET domain ALFP_0127 PF00205 Thiamine pyrophosphate enzyme, central domain ALFP_0127 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALFP_0127 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALFP_0128 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0129 PF04290 ALFP_0129 ALFP_0130 PF06808 ALFP_0130 ALFP_0132 PF01131 DNA topoisomerase ALFP_0132 PF01751 Toprim domain ALFP_0132 PF13342 ALFP_0132 ALFP_0133 PF09925 ALFP_0133 ALFP_0133 PF14345 ALFP_0133 ALFP_0133 PF14351 ALFP_0133 ALFP_0134 PF04361 ALFP_0134 ALFP_0135 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALFP_0136 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain ALFP_0136 PF00364 Biotin-requiring enzyme ALFP_0136 PF02785 Biotin carboxylase C-terminal domain ALFP_0136 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALFP_0137 PF01039 Carboxyl transferase domain ALFP_0138 PF00108 Thiolase, N-terminal domain ALFP_0138 PF02803 Thiolase, C-terminal domain ALFP_0139 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ALFP_0140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_0140 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_0140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_0141 PF13411 MerR HTH family regulatory protein ALFP_0142 PF00753 Metallo-beta-lactamase superfamily ALFP_0143 PF01053 Cys/Met metabolism PLP-dependent enzyme ALFP_0144 PF01323 DSBA-like thioredoxin domain ALFP_0145 PF05036 Sporulation related domain ALFP_0146 PF00750 tRNA synthetases class I (R) ALFP_0146 PF03485 Arginyl tRNA synthetase N terminal domain ALFP_0146 PF05746 DALR anticodon binding domain ALFP_0147 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) ALFP_0149 PF08895 ALFP_0149 ALFP_0151 PF00682 HMGL-like ALFP_0151 PF08502 LeuA allosteric (dimerisation) domain ALFP_0153 PF00309 ALFP_0153 ALFP_0153 PF04552 Sigma-54, DNA binding domain ALFP_0153 PF04963 Sigma-54 factor, core binding domain ALFP_0154 PF00593 TonB dependent receptor ALFP_0154 PF07715 TonB-dependent Receptor Plug Domain ALFP_0155 PF00694 Aconitase C-terminal domain ALFP_0156 PF00330 Aconitase family (aconitate hydratase) ALFP_0157 PF00682 HMGL-like ALFP_0158 PF02515 CoA-transferase family III ALFP_0159 PF06808 ALFP_0159 ALFP_0160 PF04290 ALFP_0160 ALFP_0161 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0162 PF00857 Isochorismatase family ALFP_0163 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0163 PF03466 LysR substrate binding domain ALFP_0164 PF04324 BFD-like [2Fe-2S] binding domain ALFP_0165 PF00210 Ferritin-like domain ALFP_0167 PF00009 Elongation factor Tu GTP binding domain ALFP_0167 PF03144 Elongation factor Tu domain 2 ALFP_0167 PF16658 ALFP_0167 ALFP_0168 PF01810 ALFP_0168 ALFP_0169 PF00270 DEAD/DEAH box helicase ALFP_0169 PF00271 Helicase conserved C-terminal domain ALFP_0170 PF04011 LemA family ALFP_0171 PF04536 TLP18 ALFP_0172 PF04536 TLP18 ALFP_0173 PF11067 ALFP_0173 ALFP_0174 PF01926 50S ribosome-binding GTPase ALFP_0174 PF11981 ALFP_0174 ALFP_0175 PF04343 ALFP_0175 ALFP_0176 PF04226 ALFP_0176 ALFP_0177 PF01425 Amidase ALFP_0178 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0178 PF03466 LysR substrate binding domain ALFP_0179 PF03466 LysR substrate binding domain ALFP_0180 PF13563 2'-5' RNA ligase superfamily ALFP_0181 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0181 PF03466 LysR substrate binding domain ALFP_0183 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0184 PF04290 ALFP_0184 ALFP_0185 PF06808 ALFP_0185 ALFP_0186 PF01436 NHL repeat ALFP_0187 PF02405 ALFP_0187 ALFP_0187 PF13466 STAS domain ALFP_0188 PF00005 ABC transporter ALFP_0189 PF02470 ALFP_0189 ALFP_0190 PF03886 Protein of unknown function (DUF330) ALFP_0192 PF13419 Haloacid dehalogenase-like hydrolase ALFP_0193 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0194 PF04290 ALFP_0194 ALFP_0195 PF06808 ALFP_0195 ALFP_0198 PF00501 AMP-binding enzyme ALFP_0198 PF13193 AMP-binding enzyme C-terminal domain ALFP_0199 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0201 PF00392 Bacterial regulatory proteins, gntR family ALFP_0201 PF07729 FCD domain ALFP_0202 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0202 PF03466 LysR substrate binding domain ALFP_0203 PF01266 FAD dependent oxidoreductase ALFP_0204 PF01757 ALFP_0204 ALFP_0205 PF02646 ALFP_0205 ALFP_0207 PF09907 ALFP_0207 ALFP_0208 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_0208 PF00563 EAL domain ALFP_0208 PF00990 GGDEF domain ALFP_0208 PF08448 PAS fold ALFP_0209 PF00708 Acylphosphatase ALFP_0210 PF01380 SIS domain ALFP_0211 PF16868 ALFP_0211 ALFP_0212 PF06808 ALFP_0212 ALFP_0212 PF11874 ALFP_0212 ALFP_0213 PF00849 RNA pseudouridylate synthase ALFP_0214 PF00710 Asparaginase ALFP_0215 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0216 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0217 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_0218 PF00005 ABC transporter ALFP_0219 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALFP_0219 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ALFP_0220 PF01168 Alanine racemase, N-terminal domain ALFP_0221 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0222 PF00027 Cyclic nucleotide-binding domain ALFP_0222 PF13545 Crp-like helix-turn-helix domain ALFP_0223 PF00501 AMP-binding enzyme ALFP_0224 PF00005 ABC transporter ALFP_0224 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_0225 PF02653 ALFP_0225 ALFP_0226 PF02653 ALFP_0226 ALFP_0227 PF13458 Periplasmic binding protein ALFP_0228 PF00005 ABC transporter ALFP_0229 PF00501 AMP-binding enzyme ALFP_0230 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_0232 PF00682 HMGL-like ALFP_0233 PF02481 DNA recombination-mediator protein A ALFP_0234 PF01327 Polypeptide deformylase ALFP_0235 PF00551 Formyl transferase ALFP_0235 PF02911 Formyl transferase, C-terminal domain ALFP_0236 PF00892 EamA-like transporter family ALFP_0237 PF01425 Amidase ALFP_0238 PF11010 ALFP_0238 ALFP_0239 PF06808 ALFP_0239 ALFP_0240 PF04290 ALFP_0240 ALFP_0241 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0242 PF07286 Protein of unknown function (DUF1445) ALFP_0243 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0243 PF03466 LysR substrate binding domain ALFP_0244 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ALFP_0245 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ALFP_0246 PF00313 'Cold-shock' DNA-binding domain ALFP_0247 PF00483 Nucleotidyl transferase ALFP_0249 PF03309 Type III pantothenate kinase ALFP_0250 PF02237 Biotin protein ligase C terminal domain ALFP_0250 PF03099 Biotin/lipoate A/B protein ligase family ALFP_0251 PF02230 Phospholipase/Carboxylesterase ALFP_0252 PF00768 D-alanyl-D-alanine carboxypeptidase ALFP_0252 PF07943 Penicillin-binding protein 5, C-terminal domain ALFP_0253 PF01063 Aminotransferase class IV ALFP_0254 PF04359 Protein of unknown function (DUF493) ALFP_0255 PF03099 Biotin/lipoate A/B protein ligase family ALFP_0256 PF00378 Enoyl-CoA hydratase/isomerase family ALFP_0257 PF04055 Radical SAM superfamily ALFP_0257 PF16881 ALFP_0257 ALFP_0259 PF03167 Uracil DNA glycosylase superfamily ALFP_0260 PF00027 Cyclic nucleotide-binding domain ALFP_0260 PF13545 Crp-like helix-turn-helix domain ALFP_0262 PF10006 ALFP_0262 ALFP_0263 PF01136 ALFP_0263 ALFP_0264 PF01136 ALFP_0264 ALFP_0265 PF02036 SCP-2 sterol transfer family ALFP_0266 PF04055 Radical SAM superfamily ALFP_0266 PF13353 4Fe-4S single cluster domain ALFP_0267 PF13597 Anaerobic ribonucleoside-triphosphate reductase ALFP_0268 PF13597 Anaerobic ribonucleoside-triphosphate reductase ALFP_0269 PF01230 HIT domain ALFP_0270 PF00218 Indole-3-glycerol phosphate synthase ALFP_0271 PF00591 Glycosyl transferase family, a/b domain ALFP_0271 PF02885 Glycosyl transferase family, helical bundle domain ALFP_0272 PF00117 Glutamine amidotransferase class-I ALFP_0273 PF00425 chorismate binding enzyme ALFP_0273 PF04715 Anthranilate synthase component I, N terminal region ALFP_0274 PF13419 Haloacid dehalogenase-like hydrolase ALFP_0275 PF00563 EAL domain ALFP_0275 PF00990 GGDEF domain ALFP_0276 PF00834 Ribulose-phosphate 3 epimerase family ALFP_0277 PF04379 Protein of unknown function (DUF525) ALFP_0278 PF03562 MltA specific insert domain ALFP_0278 PF06725 3D domain ALFP_0279 PF01494 FAD binding domain ALFP_0280 PF10411 Disulfide bond isomerase protein N-terminus ALFP_0280 PF13098 Thioredoxin-like domain ALFP_0281 PF00486 Transcriptional regulatory protein, C terminal ALFP_0281 PF00563 EAL domain ALFP_0282 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_0282 PF17200 ALFP_0282 ALFP_0283 PF00756 Putative esterase ALFP_0283 PF11806 Domain of unknown function (DUF3327) ALFP_0284 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_0285 PF00857 Isochorismatase family ALFP_0286 PF00425 chorismate binding enzyme ALFP_0287 PF10282 Lactonase, 7-bladed beta-propeller ALFP_0288 PF05977 Transmembrane secretion effector ALFP_0289 PF00501 AMP-binding enzyme ALFP_0289 PF00550 Phosphopantetheine attachment site ALFP_0289 PF00668 Condensation domain ALFP_0289 PF00975 Thioesterase domain ALFP_0289 PF13193 AMP-binding enzyme C-terminal domain ALFP_0290 PF00550 Phosphopantetheine attachment site ALFP_0291 PF00501 AMP-binding enzyme ALFP_0291 PF13193 AMP-binding enzyme C-terminal domain ALFP_0292 PF01648 4'-phosphopantetheinyl transferase superfamily ALFP_0293 PF00005 ABC transporter ALFP_0294 PF00005 ABC transporter ALFP_0295 PF02653 ALFP_0295 ALFP_0296 PF02653 ALFP_0296 ALFP_0297 PF13458 Periplasmic binding protein ALFP_0298 PF12802 MarR family ALFP_0299 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0300 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0301 PF00005 ABC transporter ALFP_0302 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein ALFP_0303 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALFP_0303 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALFP_0304 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ALFP_0304 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain ALFP_0306 PF01497 Periplasmic binding protein ALFP_0307 PF00005 ABC transporter ALFP_0308 PF01032 FecCD transport family ALFP_0309 PF12146 Putative lysophospholipase ALFP_0310 PF00271 Helicase conserved C-terminal domain ALFP_0310 PF12513 Mitochondrial degradasome RNA helicase subunit C terminal ALFP_0311 PF07690 Major Facilitator Superfamily ALFP_0312 PF04657 ALFP_0312 ALFP_0313 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0313 PF03466 LysR substrate binding domain ALFP_0314 PF04773 FecR protein ALFP_0314 PF16220 ALFP_0314 ALFP_0314 PF16344 ALFP_0314 ALFP_0315 PF00571 CBS domain ALFP_0315 PF03471 Transporter associated domain ALFP_0315 PF03741 ALFP_0315 ALFP_0317 PF02678 Pirin ALFP_0317 PF05726 Pirin C-terminal cupin domain ALFP_0318 PF04116 ALFP_0318 ALFP_0319 PF00487 ALFP_0319 ALFP_0320 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ALFP_0320 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ALFP_0320 PF14518 Iron-containing redox enzyme ALFP_0322 PF01063 Aminotransferase class IV ALFP_0323 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0323 PF03466 LysR substrate binding domain ALFP_0324 PF04235 ALFP_0324 ALFP_0325 PF00440 Bacterial regulatory proteins, tetR family ALFP_0325 PF13977 Bacterial transcriptional repressor ALFP_0326 PF04229 GrpB protein ALFP_0327 PF13673 Acetyltransferase (GNAT) domain ALFP_0328 PF01636 Phosphotransferase enzyme family ALFP_0329 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALFP_0330 PF01177 Asp/Glu/Hydantoin racemase ALFP_0331 PF01613 Flavin reductase like domain ALFP_0332 PF01546 Peptidase family M20/M25/M40 ALFP_0333 PF01979 Amidohydrolase family ALFP_0334 PF01979 Amidohydrolase family ALFP_0335 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0336 PF00005 ABC transporter ALFP_0337 PF09084 NMT1/THI5 like ALFP_0338 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0338 PF03466 LysR substrate binding domain ALFP_0339 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_0340 PF00005 ABC transporter ALFP_0341 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0342 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0343 PF00701 Dihydrodipicolinate synthetase family ALFP_0345 PF01548 ALFP_0345 ALFP_0345 PF02371 ALFP_0345 ALFP_0346 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALFP_0346 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALFP_0347 PF00171 Aldehyde dehydrogenase family ALFP_0348 PF13557 ALFP_0348 ALFP_0349 PF06433 Methylamine dehydrogenase heavy chain (MADH) ALFP_0350 PF07291 ALFP_0350 ALFP_0351 PF13098 Thioredoxin-like domain ALFP_0352 PF02975 Methylamine dehydrogenase, L chain ALFP_0354 PF12833 Helix-turn-helix domain ALFP_0354 PF14525 ALFP_0354 ALFP_0356 PF01208 Uroporphyrinogen decarboxylase (URO-D) ALFP_0357 PF00270 DEAD/DEAH box helicase ALFP_0357 PF00271 Helicase conserved C-terminal domain ALFP_0358 PF00580 UvrD/REP helicase N-terminal domain ALFP_0358 PF13361 UvrD-like helicase C-terminal domain ALFP_0360 PF01548 ALFP_0360 ALFP_0360 PF02371 ALFP_0360 ALFP_0361 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_0361 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ALFP_0362 PF00310 Glutamine amidotransferases class-II ALFP_0362 PF01493 GXGXG motif ALFP_0362 PF01645 Conserved region in glutamate synthase ALFP_0362 PF04898 Glutamate synthase central domain ALFP_0364 PF00378 Enoyl-CoA hydratase/isomerase family ALFP_0365 PF03060 Nitronate monooxygenase ALFP_0366 PF02515 CoA-transferase family III ALFP_0367 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALFP_0367 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALFP_0369 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_0372 PF00593 TonB dependent receptor ALFP_0372 PF07715 TonB-dependent Receptor Plug Domain ALFP_0373 PF04262 Glutamate-cysteine ligase ALFP_0376 PF00561 alpha/beta hydrolase fold ALFP_0377 PF07021 Methionine biosynthesis protein MetW ALFP_0378 PF07690 Major Facilitator Superfamily ALFP_0379 PF03458 ALFP_0379 ALFP_0380 PF04172 ALFP_0380 ALFP_0381 PF03788 ALFP_0381 ALFP_0382 PF01042 Endoribonuclease L-PSP ALFP_0383 PF01042 Endoribonuclease L-PSP ALFP_0384 PF09830 ATP adenylyltransferase ALFP_0385 PF00072 Response regulator receiver domain ALFP_0385 PF12833 Helix-turn-helix domain ALFP_0386 PF05658 Head domain of trimeric autotransporter adhesin ALFP_0386 PF13018 ALFP_0386 ALFP_0387 PF00486 Transcriptional regulatory protein, C terminal ALFP_0388 PF00474 Sodium:solute symporter family ALFP_0390 PF01810 ALFP_0390 ALFP_0391 PF13640 2OG-Fe(II) oxygenase superfamily ALFP_0392 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALFP_0394 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0394 PF03466 LysR substrate binding domain ALFP_0395 PF02627 Carboxymuconolactone decarboxylase family ALFP_0396 PF00202 Aminotransferase class-III ALFP_0397 PF01380 SIS domain ALFP_0397 PF01418 Helix-turn-helix domain, rpiR family ALFP_0398 PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase ALFP_0399 PF01923 Cobalamin adenosyltransferase ALFP_0400 PF00583 Acetyltransferase (GNAT) family ALFP_0401 PF11604 Copper binding periplasmic protein CusF ALFP_0402 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_0402 PF07724 AAA domain (Cdc48 subfamily) ALFP_0403 PF00227 Proteasome subunit ALFP_0404 PF01258 Prokaryotic dksA/traR C4-type zinc finger ALFP_0405 PF02492 CobW/HypB/UreG, nucleotide-binding domain ALFP_0405 PF07683 Cobalamin synthesis protein cobW C-terminal domain ALFP_0406 PF01475 Ferric uptake regulator family ALFP_0407 PF00005 ABC transporter ALFP_0408 PF00950 ALFP_0408 ALFP_0409 PF01297 Periplasmic solute binding protein family ALFP_0410 PF00589 Phage integrase family ALFP_0410 PF02899 Phage integrase, N-terminal SAM-like domain ALFP_0411 PF04340 Protein of unknown function, DUF484 ALFP_0412 PF01678 Diaminopimelate epimerase ALFP_0413 PF03279 ALFP_0413 ALFP_0414 PF03279 ALFP_0414 ALFP_0415 PF00438 S-adenosylmethionine synthetase, N-terminal domain ALFP_0415 PF02772 S-adenosylmethionine synthetase, central domain ALFP_0415 PF02773 S-adenosylmethionine synthetase, C-terminal domain ALFP_0416 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ALFP_0416 PF05221 S-adenosyl-L-homocysteine hydrolase ALFP_0417 PF04020 ALFP_0417 ALFP_0418 PF02219 Methylenetetrahydrofolate reductase ALFP_0419 PF01812 5-formyltetrahydrofolate cyclo-ligase family ALFP_0420 PF01464 Transglycosylase SLT domain ALFP_0420 PF14718 Soluble lytic murein transglycosylase L domain ALFP_0421 PF01743 Poly A polymerase head domain ALFP_0421 PF12627 Probable RNA and SrmB- binding site of polymerase A ALFP_0422 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase ALFP_0424 PF13649 Methyltransferase domain ALFP_0425 PF01925 ALFP_0425 ALFP_0426 PF00311 Phosphoenolpyruvate carboxylase ALFP_0427 PF00920 Dehydratase family ALFP_0428 PF02540 NAD synthase ALFP_0429 PF01614 Bacterial transcriptional regulator ALFP_0429 PF09339 IclR helix-turn-helix domain ALFP_0430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_0430 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_0430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_0431 PF02515 CoA-transferase family III ALFP_0432 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0433 PF07883 Cupin domain ALFP_0434 PF01594 ALFP_0434 ALFP_0435 PF00589 Phage integrase family ALFP_0440 PF13730 ALFP_0440 ALFP_0441 PF17273 ALFP_0441 ALFP_0444 PF03432 ALFP_0444 ALFP_0447 PF04610 ALFP_0447 ALFP_0450 PF02661 Fic/DOC family ALFP_0450 PF13776 ALFP_0450 ALFP_0451 PF00176 SNF2 family N-terminal domain ALFP_0451 PF00271 Helicase conserved C-terminal domain ALFP_0452 PF14335 ALFP_0452 ALFP_0453 PF13289 ALFP_0453 ALFP_0454 PF01935 Domain of unknown function DUF87 ALFP_0455 PF01555 DNA methylase ALFP_0456 PF06250 ALFP_0456 ALFP_0457 PF04851 Type III restriction enzyme, res subunit ALFP_0459 PF13609 Gram-negative porin ALFP_0460 PF00171 Aldehyde dehydrogenase family ALFP_0461 PF13557 ALFP_0461 ALFP_0462 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_0463 PF12833 Helix-turn-helix domain ALFP_0463 PF14525 ALFP_0463 ALFP_0464 PF00440 Bacterial regulatory proteins, tetR family ALFP_0466 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_0467 PF00501 AMP-binding enzyme ALFP_0467 PF13193 AMP-binding enzyme C-terminal domain ALFP_0468 PF13279 Thioesterase-like superfamily ALFP_0469 PF01494 FAD binding domain ALFP_0470 PF07690 Major Facilitator Superfamily ALFP_0471 PF09848 Uncharacterized conserved protein (DUF2075) ALFP_0472 PF00248 Aldo/keto reductase family ALFP_0473 PF07690 Major Facilitator Superfamily ALFP_0474 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0474 PF03466 LysR substrate binding domain ALFP_0475 PF02417 ALFP_0475 ALFP_0476 PF05974 Domain of unknown function (DUF892) ALFP_0478 PF00884 Sulfatase ALFP_0479 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0481 PF01047 MarR family ALFP_0482 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_0482 PF00175 Oxidoreductase NAD-binding domain ALFP_0482 PF00970 Oxidoreductase FAD-binding domain ALFP_0483 PF00583 Acetyltransferase (GNAT) family ALFP_0484 PF00593 TonB dependent receptor ALFP_0484 PF07715 TonB-dependent Receptor Plug Domain ALFP_0485 PF01497 Periplasmic binding protein ALFP_0486 PF00005 ABC transporter ALFP_0487 PF01032 FecCD transport family ALFP_0488 PF01032 FecCD transport family ALFP_0489 PF00005 ABC transporter ALFP_0489 PF00664 ABC transporter transmembrane region ALFP_0490 PF00005 ABC transporter ALFP_0490 PF00664 ABC transporter transmembrane region ALFP_0492 PF01565 FAD binding domain ALFP_0492 PF09330 D-lactate dehydrogenase, membrane binding ALFP_0493 PF01070 FMN-dependent dehydrogenase ALFP_0494 PF00392 Bacterial regulatory proteins, gntR family ALFP_0494 PF07729 FCD domain ALFP_0495 PF02652 ALFP_0495 ALFP_0498 PF00392 Bacterial regulatory proteins, gntR family ALFP_0498 PF07702 UTRA domain ALFP_0499 PF01037 AsnC family ALFP_0499 PF13412 Winged helix-turn-helix DNA-binding ALFP_0500 PF00266 Aminotransferase class-V ALFP_0501 PF00324 Amino acid permease ALFP_0504 PF00578 AhpC/TSA family ALFP_0505 PF01970 ALFP_0505 ALFP_0506 PF07331 ALFP_0506 ALFP_0507 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0508 PF00455 ALFP_0508 ALFP_0508 PF08220 DeoR-like helix-turn-helix domain ALFP_0509 PF00005 ABC transporter ALFP_0509 PF08402 TOBE domain ALFP_0510 PF13416 Bacterial extracellular solute-binding protein ALFP_0511 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0512 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0513 PF00149 Calcineurin-like phosphoesterase ALFP_0514 PF00593 TonB dependent receptor ALFP_0514 PF07660 Secretin and TonB N terminus short domain ALFP_0514 PF07715 TonB-dependent Receptor Plug Domain ALFP_0515 PF04773 FecR protein ALFP_0515 PF16220 ALFP_0515 ALFP_0515 PF16344 ALFP_0515 ALFP_0516 PF04542 Sigma-70 region 2 ALFP_0516 PF08281 Sigma-70, region 4 ALFP_0517 PF03741 ALFP_0517 ALFP_0518 PF13616 PPIC-type PPIASE domain ALFP_0520 PF02639 ALFP_0520 ALFP_0521 PF12643 ALFP_0521 ALFP_0522 PF01966 HD domain ALFP_0523 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0524 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ALFP_0524 PF13378 Enolase C-terminal domain-like ALFP_0525 PF01479 S4 domain ALFP_0526 PF07690 Major Facilitator Superfamily ALFP_0527 PF00440 Bacterial regulatory proteins, tetR family ALFP_0528 PF01794 ALFP_0528 ALFP_0528 PF08022 ALFP_0528 ALFP_0529 PF01425 Amidase ALFP_0530 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0531 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0531 PF03466 LysR substrate binding domain ALFP_0532 PF12833 Helix-turn-helix domain ALFP_0532 PF12852 Cupin ALFP_0533 PF02627 Carboxymuconolactone decarboxylase family ALFP_0534 PF08803 Putative mono-oxygenase ydhR ALFP_0535 PF00892 EamA-like transporter family ALFP_0536 PF00183 Hsp90 protein ALFP_0536 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_0537 PF00593 TonB dependent receptor ALFP_0537 PF07715 TonB-dependent Receptor Plug Domain ALFP_0538 PF13640 2OG-Fe(II) oxygenase superfamily ALFP_0539 PF01070 FMN-dependent dehydrogenase ALFP_0540 PF01510 N-acetylmuramoyl-L-alanine amidase ALFP_0542 PF01578 ALFP_0542 ALFP_0543 PF00448 SRP54-type protein, GTPase domain ALFP_0543 PF02881 SRP54-type protein, helical bundle domain ALFP_0543 PF02978 Signal peptide binding domain ALFP_0544 PF01476 LysM domain ALFP_0544 PF04972 BON domain ALFP_0545 PF02597 ThiS family ALFP_0546 PF00561 alpha/beta hydrolase fold ALFP_0547 PF02390 Putative methyltransferase ALFP_0550 PF01904 Protein of unknown function DUF72 ALFP_0551 PF00857 Isochorismatase family ALFP_0553 PF12833 Helix-turn-helix domain ALFP_0553 PF14525 ALFP_0553 ALFP_0555 PF01381 Helix-turn-helix ALFP_0556 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_0557 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0557 PF03466 LysR substrate binding domain ALFP_0558 PF01699 Sodium/calcium exchanger protein ALFP_0559 PF00072 Response regulator receiver domain ALFP_0559 PF12833 Helix-turn-helix domain ALFP_0560 PF01323 DSBA-like thioredoxin domain ALFP_0561 PF00083 Sugar (and other) transporter ALFP_0562 PF00596 Class II Aldolase and Adducin N-terminal domain ALFP_0563 PF08761 dUTPase ALFP_0563 PF13302 Acetyltransferase (GNAT) domain ALFP_0565 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ALFP_0566 PF07883 Cupin domain ALFP_0567 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0567 PF03466 LysR substrate binding domain ALFP_0568 PF01545 Cation efflux family ALFP_0568 PF16916 ALFP_0568 ALFP_0569 PF01588 Putative tRNA binding domain ALFP_0569 PF09334 tRNA synthetases class I (M) ALFP_0571 PF01883 Domain of unknown function DUF59 ALFP_0571 PF10609 ParA/MinD ATPase like ALFP_0572 PF01103 Surface antigen ALFP_0572 PF17243 ALFP_0572 ALFP_0573 PF04357 ALFP_0573 ALFP_0574 PF00692 dUTPase ALFP_0575 PF01276 Orn/Lys/Arg decarboxylase, major domain ALFP_0575 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ALFP_0575 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ALFP_0576 PF03486 HI0933-like protein ALFP_0577 PF01597 Glycine cleavage H-protein ALFP_0578 PF00186 Dihydrofolate reductase ALFP_0579 PF00303 Thymidylate synthase ALFP_0580 PF02566 OsmC-like protein ALFP_0581 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_0582 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO ALFP_0583 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_0584 PF02630 SCO1/SenC ALFP_0586 PF03232 ALFP_0586 ALFP_0587 PF00224 Pyruvate kinase, barrel domain ALFP_0587 PF02887 Pyruvate kinase, alpha/beta domain ALFP_0588 PF03928 Domain of unknown function (DUF336) ALFP_0589 PF05161 MOFRL family ALFP_0589 PF13660 Domain of unknown function (DUF4147) ALFP_0590 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALFP_0590 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALFP_0591 PF01261 Xylose isomerase-like TIM barrel ALFP_0592 PF00205 Thiamine pyrophosphate enzyme, central domain ALFP_0592 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALFP_0592 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALFP_0593 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0593 PF03466 LysR substrate binding domain ALFP_0595 PF00860 Permease family ALFP_0596 PF01361 Tautomerase enzyme ALFP_0597 PF00596 Class II Aldolase and Adducin N-terminal domain ALFP_0598 PF04115 Ureidoglycolate hydrolase ALFP_0599 PF09349 OHCU decarboxylase ALFP_0600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0600 PF03466 LysR substrate binding domain ALFP_0601 PF00953 Glycosyl transferase family 4 ALFP_0602 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALFP_0602 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALFP_0602 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALFP_0603 PF01370 NAD dependent epimerase/dehydratase family ALFP_0604 PF03023 ALFP_0604 ALFP_0605 PF00534 Glycosyl transferases group 1 ALFP_0605 PF13439 Glycosyltransferase Family 4 ALFP_0606 PF00534 Glycosyl transferases group 1 ALFP_0606 PF13439 Glycosyltransferase Family 4 ALFP_0607 PF00534 Glycosyl transferases group 1 ALFP_0607 PF13439 Glycosyltransferase Family 4 ALFP_0607 PF13477 Glycosyl transferase 4-like ALFP_0608 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALFP_0608 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALFP_0608 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALFP_0608 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALFP_0609 PF01565 FAD binding domain ALFP_0609 PF02913 FAD linked oxidases, C-terminal domain ALFP_0610 PF01569 PAP2 superfamily ALFP_0611 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALFP_0611 PF09298 Fumarylacetoacetase N-terminal ALFP_0612 PF04209 homogentisate 1,2-dioxygenase ALFP_0613 PF10932 ALFP_0613 ALFP_0614 PF01494 FAD binding domain ALFP_0615 PF00753 Metallo-beta-lactamase superfamily ALFP_0616 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ALFP_0616 PF06827 Zinc finger found in FPG and IleRS ALFP_0616 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ALFP_0617 PF07721 Tetratricopeptide repeat ALFP_0617 PF13432 Tetratricopeptide repeat ALFP_0617 PF14559 Tetratricopeptide repeat ALFP_0618 PF03550 Outer membrane lipoprotein LolB ALFP_0619 PF00288 GHMP kinases N terminal domain ALFP_0619 PF08544 GHMP kinases C terminal ALFP_0620 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ALFP_0620 PF14572 Phosphoribosyl synthetase-associated domain ALFP_0621 PF01386 Ribosomal L25p family ALFP_0621 PF14693 Ribosomal protein TL5, C-terminal domain ALFP_0622 PF01195 Peptidyl-tRNA hydrolase ALFP_0623 PF02517 CAAX protease self-immunity ALFP_0624 PF01926 50S ribosome-binding GTPase ALFP_0624 PF06071 Protein of unknown function (DUF933) ALFP_0625 PF06296 ALFP_0625 ALFP_0626 PF06296 ALFP_0626 ALFP_0627 PF01381 Helix-turn-helix ALFP_0628 PF02311 AraC-like ligand binding domain ALFP_0628 PF12833 Helix-turn-helix domain ALFP_0629 PF00892 EamA-like transporter family ALFP_0630 PF01909 Nucleotidyltransferase domain ALFP_0630 PF13427 ALFP_0630 ALFP_0631 PF00005 ABC transporter ALFP_0632 PF01323 DSBA-like thioredoxin domain ALFP_0633 PF00657 GDSL-like Lipase/Acylhydrolase ALFP_0633 PF03797 Autotransporter beta-domain ALFP_0634 PF00484 Carbonic anhydrase ALFP_0635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0635 PF03466 LysR substrate binding domain ALFP_0636 PF04115 Ureidoglycolate hydrolase ALFP_0637 PF00005 ABC transporter ALFP_0638 PF03379 ALFP_0638 ALFP_0639 PF01578 ALFP_0639 ALFP_0640 PF04995 ALFP_0640 ALFP_0641 PF03100 CcmE ALFP_0642 PF01578 ALFP_0642 ALFP_0642 PF16327 ALFP_0642 ALFP_0643 PF08534 Redoxin ALFP_0644 PF03918 Cytochrome C biogenesis protein ALFP_0646 PF02683 ALFP_0646 ALFP_0647 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_0648 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALFP_0648 PF02805 Metal binding domain of Ada ALFP_0648 PF12833 Helix-turn-helix domain ALFP_0649 PF00403 Heavy-metal-associated domain ALFP_0650 PF08816 Inhibitor of vertebrate lysozyme (Ivy) ALFP_0651 PF13458 Periplasmic binding protein ALFP_0652 PF02653 ALFP_0652 ALFP_0653 PF02653 ALFP_0653 ALFP_0654 PF00005 ABC transporter ALFP_0654 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_0655 PF00005 ABC transporter ALFP_0656 PF00034 Cytochrome c ALFP_0656 PF03150 Di-haem cytochrome c peroxidase ALFP_0657 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALFP_0657 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_0658 PF02082 Transcriptional regulator ALFP_0659 PF01152 Bacterial-like globin ALFP_0660 PF00535 Glycosyl transferase family 2 ALFP_0661 PF13231 ALFP_0661 ALFP_0662 PF04138 ALFP_0662 ALFP_0663 PF04794 YdjC-like protein ALFP_0664 PF13420 Acetyltransferase (GNAT) domain ALFP_0665 PF04273 Putative phosphatase (DUF442) ALFP_0666 PF00582 Universal stress protein family ALFP_0667 PF11390 ALFP_0667 ALFP_0668 PF02634 FdhD/NarQ family ALFP_0669 PF00384 Molybdopterin oxidoreductase ALFP_0669 PF01568 Molydopterin dinucleotide binding domain ALFP_0669 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALFP_0669 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ALFP_0669 PF12838 4Fe-4S dicluster domain ALFP_0669 PF13510 2Fe-2S iron-sulfur cluster binding domain ALFP_0670 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ALFP_0670 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ALFP_0671 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin ALFP_0672 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0672 PF12727 PBP superfamily domain ALFP_0673 PF04055 Radical SAM superfamily ALFP_0673 PF06463 Molybdenum Cofactor Synthesis C ALFP_0673 PF13353 4Fe-4S single cluster domain ALFP_0674 PF12804 MobA-like NTP transferase domain ALFP_0675 PF00994 Probable molybdopterin binding domain ALFP_0675 PF03453 MoeA N-terminal region (domain I and II) ALFP_0675 PF03454 MoeA C-terminal region (domain IV) ALFP_0676 PF00994 Probable molybdopterin binding domain ALFP_0677 PF02391 MoaE protein ALFP_0678 PF02597 ThiS family ALFP_0679 PF01967 MoaC family ALFP_0680 PF00072 Response regulator receiver domain ALFP_0680 PF00196 Bacterial regulatory proteins, luxR family ALFP_0681 PF00512 His Kinase A (phospho-acceptor) domain ALFP_0681 PF00989 PAS fold ALFP_0681 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_0682 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0683 PF04290 ALFP_0683 ALFP_0684 PF06808 ALFP_0684 ALFP_0685 PF08534 Redoxin ALFP_0686 PF00083 Sugar (and other) transporter ALFP_0686 PF07690 Major Facilitator Superfamily ALFP_0687 PF02608 Basic membrane protein ALFP_0689 PF04055 Radical SAM superfamily ALFP_0689 PF06968 Biotin and Thiamin Synthesis associated domain ALFP_0690 PF03061 Thioesterase superfamily ALFP_0691 PF11697 ALFP_0691 ALFP_0692 PF00873 AcrB/AcrD/AcrF family ALFP_0693 PF16576 ALFP_0693 ALFP_0694 PF00440 Bacterial regulatory proteins, tetR family ALFP_0696 PF04055 Radical SAM superfamily ALFP_0698 PF01471 Putative peptidoglycan binding domain ALFP_0699 PF00563 EAL domain ALFP_0699 PF00990 GGDEF domain ALFP_0699 PF13426 PAS domain ALFP_0700 PF00795 Carbon-nitrogen hydrolase ALFP_0701 PF00571 CBS domain ALFP_0701 PF03471 Transporter associated domain ALFP_0702 PF02130 Uncharacterized protein family UPF0054 ALFP_0703 PF02562 PhoH-like protein ALFP_0704 PF00919 Uncharacterized protein family UPF0004 ALFP_0704 PF01938 TRAM domain ALFP_0704 PF04055 Radical SAM superfamily ALFP_0705 PF11903 ALFP_0705 ALFP_0706 PF00557 Metallopeptidase family M24 ALFP_0707 PF02355 Protein export membrane protein ALFP_0707 PF07549 SecD/SecF GG Motif ALFP_0708 PF02355 Protein export membrane protein ALFP_0708 PF07549 SecD/SecF GG Motif ALFP_0708 PF13721 SecD export protein N-terminal TM region ALFP_0709 PF02699 Preprotein translocase subunit ALFP_0710 PF01702 Queuine tRNA-ribosyltransferase ALFP_0711 PF02547 Queuosine biosynthesis protein ALFP_0712 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ALFP_0713 PF14681 Uracil phosphoribosyltransferase ALFP_0715 PF05957 ALFP_0715 ALFP_0716 PF07332 ALFP_0716 ALFP_0718 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0718 PF03466 LysR substrate binding domain ALFP_0719 PF00355 Rieske [2Fe-2S] domain ALFP_0719 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_0720 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_0720 PF00175 Oxidoreductase NAD-binding domain ALFP_0720 PF00970 Oxidoreductase FAD-binding domain ALFP_0721 PF01370 NAD dependent epimerase/dehydratase family ALFP_0723 PF06545 Protein of unknown function (DUF1116) ALFP_0724 PF01425 Amidase ALFP_0726 PF00083 Sugar (and other) transporter ALFP_0726 PF07690 Major Facilitator Superfamily ALFP_0727 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0727 PF03466 LysR substrate binding domain ALFP_0728 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_0729 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ALFP_0730 PF01464 Transglycosylase SLT domain ALFP_0731 PF00155 Aminotransferase class I and II ALFP_0734 PF00390 Malic enzyme, N-terminal domain ALFP_0734 PF01515 Phosphate acetyl/butaryl transferase ALFP_0734 PF03949 Malic enzyme, NAD binding domain ALFP_0735 PF01734 Patatin-like phospholipase ALFP_0736 PF01337 Barstar (barnase inhibitor) ALFP_0737 PF04452 RNA methyltransferase ALFP_0738 PF00456 Transketolase, thiamine diphosphate binding domain ALFP_0738 PF02779 Transketolase, pyrimidine binding domain ALFP_0738 PF02780 Transketolase, C-terminal domain ALFP_0739 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALFP_0739 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALFP_0740 PF00162 Phosphoglycerate kinase ALFP_0741 PF01370 NAD dependent epimerase/dehydratase family ALFP_0743 PF00171 Aldehyde dehydrogenase family ALFP_0744 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_0745 PF00994 Probable molybdopterin binding domain ALFP_0746 PF01116 Fructose-bisphosphate aldolase class-II ALFP_0747 PF01259 SAICAR synthetase ALFP_0748 PF00731 AIR carboxylase ALFP_0749 PF02222 ATP-grasp domain ALFP_0750 PF01300 Telomere recombination ALFP_0750 PF03481 Putative GTP-binding controlling metal-binding ALFP_0751 PF12697 Alpha/beta hydrolase family ALFP_0752 PF01575 MaoC like domain ALFP_0753 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_0753 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_0753 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_0754 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0754 PF03466 LysR substrate binding domain ALFP_0755 PF01019 Gamma-glutamyltranspeptidase ALFP_0756 PF00551 Formyl transferase ALFP_0757 PF01266 FAD dependent oxidoreductase ALFP_0758 PF01613 Flavin reductase like domain ALFP_0759 PF01243 Pyridoxamine 5'-phosphate oxidase ALFP_0759 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ALFP_0760 PF04752 ALFP_0760 ALFP_0761 PF00899 ThiF family ALFP_0762 PF01063 Aminotransferase class IV ALFP_0763 PF00425 chorismate binding enzyme ALFP_0764 PF00005 ABC transporter ALFP_0766 PF00535 Glycosyl transferase family 2 ALFP_0768 PF00005 ABC transporter ALFP_0768 PF12848 ABC transporter ALFP_0769 PF00857 Isochorismatase family ALFP_0770 PF05433 ALFP_0770 ALFP_0771 PF00355 Rieske [2Fe-2S] domain ALFP_0771 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_0772 PF03776 Septum formation topological specificity factor MinE ALFP_0773 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ALFP_0774 PF03775 Septum formation inhibitor MinC, C-terminal domain ALFP_0774 PF05209 Septum formation inhibitor MinC, N-terminal domain ALFP_0775 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALFP_0775 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ALFP_0776 PF01654 ALFP_0776 ALFP_0777 PF02322 ALFP_0777 ALFP_0778 PF00571 CBS domain ALFP_0778 PF00654 Voltage gated chloride channel ALFP_0780 PF00270 DEAD/DEAH box helicase ALFP_0780 PF00271 Helicase conserved C-terminal domain ALFP_0780 PF00570 HRDC domain ALFP_0780 PF09382 RQC domain ALFP_0780 PF16124 ALFP_0780 ALFP_0781 PF00317 Ribonucleotide reductase, all-alpha domain ALFP_0781 PF02867 Ribonucleotide reductase, barrel domain ALFP_0781 PF03477 ATP cone domain ALFP_0782 PF00268 Ribonucleotide reductase, small chain ALFP_0783 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_0784 PF00005 ABC transporter ALFP_0784 PF12848 ABC transporter ALFP_0784 PF16326 ALFP_0784 ALFP_0785 PF02381 MraZ protein ALFP_0786 PF01795 MraW methylase family ALFP_0787 PF04999 ALFP_0787 ALFP_0788 PF00905 Penicillin binding protein transpeptidase domain ALFP_0788 PF03717 Penicillin-binding Protein dimerisation domain ALFP_0789 PF01225 Mur ligase family, catalytic domain ALFP_0789 PF02875 Mur ligase family, glutamate ligase domain ALFP_0789 PF08245 Mur ligase middle domain ALFP_0790 PF00953 Glycosyl transferase family 4 ALFP_0790 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ALFP_0791 PF02875 Mur ligase family, glutamate ligase domain ALFP_0791 PF08245 Mur ligase middle domain ALFP_0792 PF01098 ALFP_0792 ALFP_0793 PF03033 Glycosyltransferase family 28 N-terminal domain ALFP_0793 PF04101 Glycosyltransferase family 28 C-terminal domain ALFP_0794 PF01225 Mur ligase family, catalytic domain ALFP_0794 PF02875 Mur ligase family, glutamate ligase domain ALFP_0794 PF08245 Mur ligase middle domain ALFP_0795 PF01820 D-ala D-ala ligase N-terminus ALFP_0795 PF07478 D-ala D-ala ligase C-terminus ALFP_0796 PF03799 Cell division protein FtsQ ALFP_0796 PF08478 POTRA domain, FtsQ-type ALFP_0797 PF02491 SHS2 domain inserted in FTSA ALFP_0797 PF14450 Cell division protein FtsA ALFP_0798 PF00091 Tubulin/FtsZ family, GTPase domain ALFP_0798 PF12327 FtsZ family, C-terminal domain ALFP_0799 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ALFP_0800 PF05258 ALFP_0800 ALFP_0801 PF01551 Peptidase family M23 ALFP_0802 PF01043 SecA preprotein cross-linking domain ALFP_0802 PF02810 SEC-C motif ALFP_0802 PF07516 SecA Wing and Scaffold domain ALFP_0802 PF07517 SecA DEAD-like domain ALFP_0803 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALFP_0803 PF09130 Domain of unknown function (DUF1932) ALFP_0804 PF00571 CBS domain ALFP_0804 PF01769 Divalent cation transporter ALFP_0804 PF03448 MgtE intracellular N domain ALFP_0805 PF03061 Thioesterase superfamily ALFP_0806 PF01546 Peptidase family M20/M25/M40 ALFP_0806 PF07687 Peptidase dimerisation domain ALFP_0807 PF00501 AMP-binding enzyme ALFP_0807 PF13193 AMP-binding enzyme C-terminal domain ALFP_0808 PF00459 Inositol monophosphatase family ALFP_0809 PF01266 FAD dependent oxidoreductase ALFP_0809 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ALFP_0810 PF01055 Glycosyl hydrolases family 31 ALFP_0811 PF00005 ABC transporter ALFP_0811 PF09383 NIL domain ALFP_0812 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0813 PF03180 NLPA lipoprotein ALFP_0814 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_0815 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0816 PF00005 ABC transporter ALFP_0818 PF00483 Nucleotidyl transferase ALFP_0819 PF01636 Phosphotransferase enzyme family ALFP_0820 PF04453 Organic solvent tolerance protein ALFP_0821 PF00639 PPIC-type PPIASE domain ALFP_0821 PF09312 SurA N-terminal domain ALFP_0821 PF13616 PPIC-type PPIASE domain ALFP_0822 PF00398 Ribosomal RNA adenine dimethylase ALFP_0823 PF07670 Nucleoside recognition ALFP_0824 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_0825 PF01863 Protein of unknown function DUF45 ALFP_0826 PF01553 Acyltransferase ALFP_0827 PF13242 HAD-hyrolase-like ALFP_0828 PF02092 ALFP_0828 ALFP_0828 PF05746 DALR anticodon binding domain ALFP_0829 PF02091 Glycyl-tRNA synthetase alpha subunit ALFP_0831 PF00378 Enoyl-CoA hydratase/isomerase family ALFP_0832 PF05681 ALFP_0832 ALFP_0832 PF05683 Fumarase C-terminus ALFP_0833 PF00440 Bacterial regulatory proteins, tetR family ALFP_0834 PF07690 Major Facilitator Superfamily ALFP_0835 PF07690 Major Facilitator Superfamily ALFP_0838 PF03167 Uracil DNA glycosylase superfamily ALFP_0838 PF13566 ALFP_0838 ALFP_0839 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ALFP_0840 PF01743 Poly A polymerase head domain ALFP_0840 PF12626 Polymerase A arginine-rich C-terminus ALFP_0840 PF12627 Probable RNA and SrmB- binding site of polymerase A ALFP_0841 PF12710 haloacid dehalogenase-like hydrolase ALFP_0842 PF00308 Bacterial dnaA protein ALFP_0843 PF00586 AIR synthase related protein, N-terminal domain ALFP_0843 PF02769 AIR synthase related protein, C-terminal domain ALFP_0844 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ALFP_0845 PF01715 IPP transferase ALFP_0846 PF01119 DNA mismatch repair protein, C-terminal domain ALFP_0846 PF08676 MutL C terminal dimerisation domain ALFP_0846 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_0847 PF09335 ALFP_0847 ALFP_0848 PF01520 N-acetylmuramoyl-L-alanine amidase ALFP_0848 PF11741 AMIN domain ALFP_0849 PF02367 Uncharacterised P-loop hydrolase UPF0079 ALFP_0850 PF03547 ALFP_0850 ALFP_0851 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0852 PF00390 Malic enzyme, N-terminal domain ALFP_0852 PF01515 Phosphate acetyl/butaryl transferase ALFP_0852 PF03949 Malic enzyme, NAD binding domain ALFP_0853 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0853 PF03466 LysR substrate binding domain ALFP_0854 PF00171 Aldehyde dehydrogenase family ALFP_0855 PF00701 Dihydrodipicolinate synthetase family ALFP_0856 PF00392 Bacterial regulatory proteins, gntR family ALFP_0856 PF07729 FCD domain ALFP_0857 PF06808 ALFP_0857 ALFP_0858 PF04290 ALFP_0858 ALFP_0859 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_0860 PF04120 ALFP_0860 ALFP_0863 PF05232 ALFP_0863 ALFP_0864 PF01638 HxlR-like helix-turn-helix ALFP_0865 PF13460 NADH(P)-binding ALFP_0866 PF07366 SnoaL-like polyketide cyclase ALFP_0867 PF07690 Major Facilitator Superfamily ALFP_0869 PF04073 Aminoacyl-tRNA editing domain ALFP_0870 PF00589 Phage integrase family ALFP_0870 PF02899 Phage integrase, N-terminal SAM-like domain ALFP_0871 PF13531 Bacterial extracellular solute-binding protein ALFP_0872 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0873 PF00005 ABC transporter ALFP_0874 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0874 PF03459 TOBE domain ALFP_0875 PF12705 PD-(D/E)XK nuclease superfamily ALFP_0876 PF00580 UvrD/REP helicase N-terminal domain ALFP_0876 PF12705 PD-(D/E)XK nuclease superfamily ALFP_0876 PF13361 UvrD-like helicase C-terminal domain ALFP_0877 PF12169 DNA polymerase III subunits gamma and tau domain III ALFP_0877 PF12170 DNA polymerase III tau subunit V interacting with alpha ALFP_0877 PF13177 DNA polymerase III, delta subunit ALFP_0878 PF02575 YbaB/EbfC DNA-binding family ALFP_0879 PF02132 RecR protein ALFP_0879 PF13662 Toprim domain ALFP_0880 PF13379 NMT1-like family ALFP_0881 PF00005 ABC transporter ALFP_0882 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0883 PF04542 Sigma-70 region 2 ALFP_0883 PF08281 Sigma-70, region 4 ALFP_0884 PF04773 FecR protein ALFP_0884 PF16220 ALFP_0884 ALFP_0885 PF00593 TonB dependent receptor ALFP_0885 PF07660 Secretin and TonB N terminus short domain ALFP_0885 PF07715 TonB-dependent Receptor Plug Domain ALFP_0887 PF00923 Transaldolase ALFP_0888 PF00117 Glutamine amidotransferase class-I ALFP_0888 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ALFP_0889 PF02142 MGS-like domain ALFP_0889 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALFP_0889 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ALFP_0890 PF05118 Aspartyl/Asparaginyl beta-hydroxylase ALFP_0891 PF00106 short chain dehydrogenase ALFP_0892 PF00300 Histidine phosphatase superfamily (branch 1) ALFP_0893 PF00860 Permease family ALFP_0894 PF01272 Transcription elongation factor, GreA/GreB, C-term ALFP_0894 PF03449 Transcription elongation factor, N-terminal ALFP_0895 PF01985 CRS1 / YhbY (CRM) domain ALFP_0896 PF01728 FtsJ-like methyltransferase ALFP_0897 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_0897 PF01434 Peptidase family M41 ALFP_0898 PF00809 Pterin binding enzyme ALFP_0899 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALFP_0899 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALFP_0899 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALFP_0899 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALFP_0900 PF13444 Acetyltransferase (GNAT) domain ALFP_0901 PF02541 Ppx/GppA phosphatase family ALFP_0902 PF02503 Polyphosphate kinase middle domain ALFP_0902 PF13089 Polyphosphate kinase N-terminal domain ALFP_0902 PF13090 Polyphosphate kinase C-terminal domain ALFP_0903 PF12849 PBP superfamily domain ALFP_0904 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0905 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0906 PF00005 ABC transporter ALFP_0907 PF00501 AMP-binding enzyme ALFP_0907 PF13193 AMP-binding enzyme C-terminal domain ALFP_0910 PF00072 Response regulator receiver domain ALFP_0910 PF00486 Transcriptional regulatory protein, C terminal ALFP_0911 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_0912 PF07681 ALFP_0912 ALFP_0913 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_0914 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0914 PF03466 LysR substrate binding domain ALFP_0915 PF05232 ALFP_0915 ALFP_0916 PF01593 Flavin containing amine oxidoreductase ALFP_0917 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_0918 PF04239 Protein of unknown function (DUF421) ALFP_0920 PF00884 Sulfatase ALFP_0921 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ALFP_0921 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALFP_0922 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0922 PF03466 LysR substrate binding domain ALFP_0923 PF02253 Phospholipase A1 ALFP_0924 PF04341 ALFP_0924 ALFP_0925 PF00474 Sodium:solute symporter family ALFP_0926 PF07848 PaaX-like protein ALFP_0926 PF08223 PaaX-like protein C-terminal domain ALFP_0927 PF13091 PLD-like domain ALFP_0927 PF13396 ALFP_0927 ALFP_0929 PF01300 Telomere recombination ALFP_0930 PF02163 Peptidase family M50 ALFP_0931 PF00701 Dihydrodipicolinate synthetase family ALFP_0932 PF06804 NlpB/DapX lipoprotein ALFP_0933 PF08281 Sigma-70, region 4 ALFP_0934 PF16220 ALFP_0934 ALFP_0935 PF13500 AAA domain ALFP_0936 PF00202 Aminotransferase class-III ALFP_0937 PF00155 Aminotransferase class I and II ALFP_0938 PF00067 Cytochrome P450 ALFP_0939 PF01844 HNH endonuclease ALFP_0940 PF03594 ALFP_0940 ALFP_0942 PF08007 Cupin superfamily protein ALFP_0943 PF00488 MutS domain V ALFP_0943 PF01624 MutS domain I ALFP_0943 PF05188 MutS domain II ALFP_0943 PF05190 MutS family domain IV ALFP_0943 PF05192 MutS domain III ALFP_0946 PF00593 TonB dependent receptor ALFP_0946 PF07715 TonB-dependent Receptor Plug Domain ALFP_0947 PF16576 ALFP_0947 ALFP_0948 PF00005 ABC transporter ALFP_0948 PF02687 ALFP_0948 ALFP_0948 PF12704 MacB-like periplasmic core domain ALFP_0949 PF02321 Outer membrane efflux protein ALFP_0950 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ALFP_0951 PF00005 ABC transporter ALFP_0951 PF00664 ABC transporter transmembrane region ALFP_0952 PF01019 Gamma-glutamyltranspeptidase ALFP_0953 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_0954 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0954 PF03466 LysR substrate binding domain ALFP_0955 PF00296 Luciferase-like monooxygenase ALFP_0956 PF13649 Methyltransferase domain ALFP_0957 PF00924 Mechanosensitive ion channel ALFP_0958 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_0958 PF03466 LysR substrate binding domain ALFP_0959 PF00698 Acyl transferase domain ALFP_0960 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ALFP_0961 PF10620 ALFP_0961 ALFP_0962 PF06833 Malonate decarboxylase gamma subunit (MdcE) ALFP_0963 PF01039 Carboxyl transferase domain ALFP_0964 PF06857 ALFP_0964 ALFP_0965 PF16957 ALFP_0965 ALFP_0966 PF01425 Amidase ALFP_0967 PF01614 Bacterial transcriptional regulator ALFP_0967 PF09339 IclR helix-turn-helix domain ALFP_0968 PF00588 SpoU rRNA Methylase family ALFP_0969 PF00459 Inositol monophosphatase family ALFP_0970 PF00571 CBS domain ALFP_0970 PF03471 Transporter associated domain ALFP_0970 PF03741 ALFP_0970 ALFP_0971 PF02673 ALFP_0971 ALFP_0974 PF00149 Calcineurin-like phosphoesterase ALFP_0975 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALFP_0976 PF13181 Tetratricopeptide repeat ALFP_0977 PF01406 tRNA synthetases class I (C) catalytic domain ALFP_0977 PF09190 DALR domain ALFP_0978 PF00730 HhH-GPD superfamily base excision DNA repair protein ALFP_0979 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ALFP_0980 PF01171 PP-loop family ALFP_0980 PF09179 TilS substrate binding domain ALFP_0981 PF00696 Amino acid kinase family ALFP_0981 PF13840 ACT domain ALFP_0984 PF01145 SPFH domain / Band 7 family ALFP_0986 PF12833 Helix-turn-helix domain ALFP_0986 PF14525 ALFP_0986 ALFP_0987 PF00795 Carbon-nitrogen hydrolase ALFP_0989 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_0990 PF13343 Bacterial extracellular solute-binding protein ALFP_0991 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_0992 PF00005 ABC transporter ALFP_0992 PF08402 TOBE domain ALFP_0993 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ALFP_0993 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ALFP_0994 PF12769 Domain of unknown function (DUF3814) ALFP_0995 PF02233 NAD(P) transhydrogenase beta subunit ALFP_0999 PF01070 FMN-dependent dehydrogenase ALFP_1000 PF13409 Glutathione S-transferase, N-terminal domain ALFP_1000 PF13410 Glutathione S-transferase, C-terminal domain ALFP_1001 PF03358 NADPH-dependent FMN reductase ALFP_1002 PF03061 Thioesterase superfamily ALFP_1003 PF11720 Peptidase inhibitor I78 family ALFP_1004 PF02245 Methylpurine-DNA glycosylase (MPG) ALFP_1005 PF00962 Adenosine/AMP deaminase ALFP_1006 PF04241 ALFP_1006 ALFP_1007 PF01544 CorA-like Mg2+ transporter protein ALFP_1008 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_1008 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_1009 PF00565 Staphylococcal nuclease homologue ALFP_1010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALFP_1011 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1012 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1013 PF00005 ABC transporter ALFP_1013 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALFP_1014 PF06676 ALFP_1014 ALFP_1015 PF00158 Sigma-54 interaction domain ALFP_1015 PF02954 Bacterial regulatory protein, Fis family ALFP_1016 PF01590 GAF domain ALFP_1017 PF00171 Aldehyde dehydrogenase family ALFP_1018 PF00465 Iron-containing alcohol dehydrogenase ALFP_1019 PF01132 Elongation factor P (EF-P) OB domain ALFP_1019 PF08207 Elongation factor P (EF-P) KOW-like domain ALFP_1019 PF09285 Elongation factor P, C-terminal ALFP_1020 PF10093 ALFP_1020 ALFP_1021 PF11062 ALFP_1021 ALFP_1022 PF06808 ALFP_1022 ALFP_1023 PF04290 ALFP_1023 ALFP_1024 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_1026 PF00330 Aconitase family (aconitate hydratase) ALFP_1026 PF06434 Aconitate hydratase 2 N-terminus ALFP_1026 PF11791 Aconitate B N-terminal domain ALFP_1027 PF14542 GCN5-related N-acetyl-transferase ALFP_1029 PF00285 Citrate synthase ALFP_1030 PF13714 Phosphoenolpyruvate phosphomutase ALFP_1031 PF00158 Sigma-54 interaction domain ALFP_1031 PF02954 Bacterial regulatory protein, Fis family ALFP_1031 PF06506 Propionate catabolism activator ALFP_1031 PF08448 PAS fold ALFP_1032 PF07690 Major Facilitator Superfamily ALFP_1033 PF13560 Helix-turn-helix domain ALFP_1034 PF00056 lactate/malate dehydrogenase, NAD binding domain ALFP_1034 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ALFP_1035 PF00392 Bacterial regulatory proteins, gntR family ALFP_1035 PF07702 UTRA domain ALFP_1036 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ALFP_1037 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ALFP_1038 PF00890 FAD binding domain ALFP_1038 PF02910 Fumarate reductase flavoprotein C-term ALFP_1039 PF13085 2Fe-2S iron-sulfur cluster binding domain ALFP_1039 PF13534 4Fe-4S dicluster domain ALFP_1040 PF03937 Flavinator of succinate dehydrogenase ALFP_1041 PF00285 Citrate synthase ALFP_1042 PF00392 Bacterial regulatory proteins, gntR family ALFP_1042 PF07729 FCD domain ALFP_1043 PF02652 ALFP_1043 ALFP_1044 PF00390 Malic enzyme, N-terminal domain ALFP_1044 PF01515 Phosphate acetyl/butaryl transferase ALFP_1044 PF03949 Malic enzyme, NAD binding domain ALFP_1046 PF00676 Dehydrogenase E1 component ALFP_1046 PF02779 Transketolase, pyrimidine binding domain ALFP_1046 PF16078 ALFP_1046 ALFP_1046 PF16870 ALFP_1046 ALFP_1047 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALFP_1047 PF00364 Biotin-requiring enzyme ALFP_1047 PF02817 e3 binding domain ALFP_1048 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALFP_1048 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_1049 PF03969 AFG1-like ATPase ALFP_1050 PF00579 tRNA synthetases class I (W and Y) ALFP_1051 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_1053 PF00575 S1 RNA binding domain ALFP_1053 PF09371 Tex-like protein N-terminal domain ALFP_1053 PF12836 Helix-hairpin-helix motif ALFP_1053 PF16921 ALFP_1053 ALFP_1054 PF13307 Helicase C-terminal domain ALFP_1056 PF01638 HxlR-like helix-turn-helix ALFP_1057 PF05368 NmrA-like family ALFP_1058 PF06249 Ethanolamine utilisation protein EutQ ALFP_1059 PF01266 FAD dependent oxidoreductase ALFP_1060 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_1061 PF04290 ALFP_1061 ALFP_1062 PF06808 ALFP_1062 ALFP_1063 PF00440 Bacterial regulatory proteins, tetR family ALFP_1064 PF13525 Outer membrane lipoprotein ALFP_1065 PF00849 RNA pseudouridylate synthase ALFP_1065 PF01479 S4 domain ALFP_1066 PF02578 Multi-copper polyphenol oxidoreductase laccase ALFP_1067 PF07167 ALFP_1067 ALFP_1068 PF00106 short chain dehydrogenase ALFP_1069 PF05233 ALFP_1069 ALFP_1069 PF07879 ALFP_1069 ALFP_1070 PF04339 ALFP_1070 ALFP_1072 PF04079 Putative transcriptional regulators (Ypuh-like) ALFP_1073 PF00849 RNA pseudouridylate synthase ALFP_1073 PF01479 S4 domain ALFP_1074 PF02576 Uncharacterised BCR, YhbC family COG0779 ALFP_1074 PF17384 ALFP_1074 ALFP_1075 PF00575 S1 RNA binding domain ALFP_1075 PF08529 NusA N-terminal domain ALFP_1075 PF13184 NusA-like KH domain ALFP_1075 PF14520 Helix-hairpin-helix domain ALFP_1076 PF00009 Elongation factor Tu GTP binding domain ALFP_1076 PF04760 Translation initiation factor IF-2, N-terminal region ALFP_1076 PF08364 ALFP_1076 ALFP_1076 PF11987 Translation-initiation factor 2 ALFP_1077 PF02033 Ribosome-binding factor A ALFP_1078 PF01509 TruB family pseudouridylate synthase (N terminal domain) ALFP_1078 PF16198 ALFP_1078 ALFP_1079 PF00009 Elongation factor Tu GTP binding domain ALFP_1079 PF00679 Elongation factor G C-terminus ALFP_1079 PF03144 Elongation factor Tu domain 2 ALFP_1080 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_1081 PF07849 ALFP_1081 ALFP_1082 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1083 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1084 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_1085 PF03641 Possible lysine decarboxylase ALFP_1086 PF00476 DNA polymerase family A ALFP_1086 PF01367 5'-3' exonuclease, C-terminal SAM fold ALFP_1086 PF01612 3'-5' exonuclease ALFP_1086 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ALFP_1087 PF02690 ALFP_1087 ALFP_1088 PF12802 MarR family ALFP_1089 PF00456 Transketolase, thiamine diphosphate binding domain ALFP_1091 PF13673 Acetyltransferase (GNAT) domain ALFP_1092 PF01435 Peptidase family M48 ALFP_1094 PF00892 EamA-like transporter family ALFP_1095 PF00581 Rhodanese-like domain ALFP_1096 PF02609 Exonuclease VII small subunit ALFP_1097 PF00348 Polyprenyl synthetase ALFP_1098 PF02779 Transketolase, pyrimidine binding domain ALFP_1098 PF02780 Transketolase, C-terminal domain ALFP_1098 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ALFP_1099 PF02649 Type I GTP cyclohydrolase folE2 ALFP_1100 PF01250 Ribosomal protein S6 ALFP_1102 PF01084 Ribosomal protein S18 ALFP_1103 PF01281 Ribosomal protein L9, N-terminal domain ALFP_1103 PF03948 Ribosomal protein L9, C-terminal domain ALFP_1104 PF00772 DnaB-like helicase N terminal domain ALFP_1104 PF03796 DnaB-like helicase C terminal domain ALFP_1105 PF13593 SBF-like CPA transporter family (DUF4137) ALFP_1106 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ALFP_1107 PF02562 PhoH-like protein ALFP_1107 PF13638 PIN domain ALFP_1108 PF00578 AhpC/TSA family ALFP_1109 PF04430 Protein of unknown function (DUF498/DUF598) ALFP_1110 PF00155 Aminotransferase class I and II ALFP_1111 PF00742 Homoserine dehydrogenase ALFP_1111 PF01842 ACT domain ALFP_1111 PF03447 Homoserine dehydrogenase, NAD binding domain ALFP_1112 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_1112 PF14821 Threonine synthase N terminus ALFP_1113 PF13302 Acetyltransferase (GNAT) domain ALFP_1114 PF01593 Flavin containing amine oxidoreductase ALFP_1115 PF00494 Squalene/phytoene synthase ALFP_1116 PF00494 Squalene/phytoene synthase ALFP_1117 PF00842 Alanine racemase, C-terminal domain ALFP_1117 PF01168 Alanine racemase, N-terminal domain ALFP_1118 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_1119 PF05362 Lon protease (S16) C-terminal proteolytic domain ALFP_1119 PF13481 AAA domain ALFP_1120 PF01925 ALFP_1120 ALFP_1121 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family ALFP_1122 PF13416 Bacterial extracellular solute-binding protein ALFP_1123 PF00005 ABC transporter ALFP_1123 PF08402 TOBE domain ALFP_1124 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1125 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1126 PF03960 ArsC family ALFP_1127 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ALFP_1128 PF01895 PhoU domain ALFP_1129 PF00563 EAL domain ALFP_1130 PF00916 ALFP_1130 ALFP_1131 PF04362 Bacterial Fe(2+) trafficking ALFP_1133 PF00696 Amino acid kinase family ALFP_1133 PF13508 Acetyltransferase (GNAT) domain ALFP_1134 PF00270 DEAD/DEAH box helicase ALFP_1134 PF00271 Helicase conserved C-terminal domain ALFP_1134 PF04408 Helicase associated domain (HA2) ALFP_1134 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ALFP_1134 PF11898 ALFP_1134 ALFP_1135 PF01336 OB-fold nucleic acid binding domain ALFP_1135 PF02811 PHP domain ALFP_1135 PF07733 Bacterial DNA polymerase III alpha subunit ALFP_1135 PF14579 Helix-hairpin-helix motif ALFP_1136 PF00534 Glycosyl transferases group 1 ALFP_1136 PF13439 Glycosyltransferase Family 4 ALFP_1137 PF01522 Polysaccharide deacetylase ALFP_1138 PF00535 Glycosyl transferase family 2 ALFP_1139 PF01522 Polysaccharide deacetylase ALFP_1140 PF00534 Glycosyl transferases group 1 ALFP_1140 PF13439 Glycosyltransferase Family 4 ALFP_1142 PF00534 Glycosyl transferases group 1 ALFP_1142 PF13439 Glycosyltransferase Family 4 ALFP_1144 PF02698 DUF218 domain ALFP_1145 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ALFP_1146 PF00005 ABC transporter ALFP_1146 PF00664 ABC transporter transmembrane region ALFP_1148 PF13671 AAA domain ALFP_1149 PF10150 Ribonuclease E/G family ALFP_1150 PF01593 Flavin containing amine oxidoreductase ALFP_1151 PF00392 Bacterial regulatory proteins, gntR family ALFP_1151 PF07729 FCD domain ALFP_1152 PF01565 FAD binding domain ALFP_1152 PF02913 FAD linked oxidases, C-terminal domain ALFP_1153 PF01565 FAD binding domain ALFP_1154 PF02754 ALFP_1154 ALFP_1154 PF13183 4Fe-4S dicluster domain ALFP_1156 PF06674 ALFP_1156 ALFP_1157 PF01124 MAPEG family ALFP_1158 PF01594 ALFP_1158 ALFP_1159 PF02690 ALFP_1159 ALFP_1161 PF13609 Gram-negative porin ALFP_1162 PF00892 EamA-like transporter family ALFP_1163 PF01734 Patatin-like phospholipase ALFP_1163 PF12536 ALFP_1163 ALFP_1164 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1164 PF03466 LysR substrate binding domain ALFP_1165 PF03601 ALFP_1165 ALFP_1166 PF04247 ALFP_1166 ALFP_1167 PF00753 Metallo-beta-lactamase superfamily ALFP_1168 PF01022 Bacterial regulatory protein, arsR family ALFP_1169 PF04143 ALFP_1169 ALFP_1170 PF04143 ALFP_1170 ALFP_1171 PF13411 MerR HTH family regulatory protein ALFP_1173 PF00122 E1-E2 ATPase ALFP_1173 PF00702 haloacid dehalogenase-like hydrolase ALFP_1174 PF00916 ALFP_1174 ALFP_1174 PF01740 STAS domain ALFP_1175 PF03781 Sulfatase-modifying factor enzyme 1 ALFP_1176 PF00884 Sulfatase ALFP_1177 PF05154 ALFP_1177 ALFP_1178 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ALFP_1178 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ALFP_1179 PF01266 FAD dependent oxidoreductase ALFP_1179 PF16901 ALFP_1179 ALFP_1180 PF00877 NlpC/P60 family ALFP_1181 PF05247 Flagellar transcriptional activator (FlhD) ALFP_1182 PF05280 Flagellar transcriptional activator (FlhC) ALFP_1183 PF01618 ALFP_1183 ALFP_1184 PF00691 OmpA family ALFP_1184 PF13677 ALFP_1184 ALFP_1185 PF01584 CheW-like domain ALFP_1185 PF01627 Hpt domain ALFP_1185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_1185 PF02895 Signal transducing histidine kinase, homodimeric domain ALFP_1185 PF09078 CheY binding ALFP_1186 PF01584 CheW-like domain ALFP_1187 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_1187 PF00672 HAMP domain ALFP_1187 PF02203 Tar ligand binding domain homologue ALFP_1188 PF01739 CheR methyltransferase, SAM binding domain ALFP_1188 PF03705 CheR methyltransferase, all-alpha domain ALFP_1189 PF00072 Response regulator receiver domain ALFP_1189 PF01339 CheB methylesterase ALFP_1190 PF00072 Response regulator receiver domain ALFP_1191 PF04344 Chemotaxis phosphatase, CheZ ALFP_1192 PF01312 FlhB HrpN YscU SpaS Family ALFP_1193 PF00771 FHIPEP family ALFP_1194 PF00448 SRP54-type protein, GTPase domain ALFP_1195 PF07804 HipA-like C-terminal domain ALFP_1195 PF13657 HipA N-terminal domain ALFP_1196 PF01381 Helix-turn-helix ALFP_1198 PF05130 FlgN protein ALFP_1199 PF04316 Anti-sigma-28 factor, FlgM ALFP_1200 PF13144 SAF-like ALFP_1201 PF00460 Flagella basal body rod protein ALFP_1202 PF00460 Flagella basal body rod protein ALFP_1202 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALFP_1203 PF03963 ALFP_1203 ALFP_1203 PF13860 FlgD Ig-like domain ALFP_1203 PF13861 FlgD Tudor-like domain ALFP_1204 PF00460 Flagella basal body rod protein ALFP_1204 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALFP_1204 PF07559 Flagellar basal body protein FlaE ALFP_1205 PF00460 Flagella basal body rod protein ALFP_1205 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALFP_1206 PF00460 Flagella basal body rod protein ALFP_1206 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALFP_1207 PF02107 ALFP_1207 ALFP_1208 PF02119 ALFP_1208 ALFP_1209 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ALFP_1209 PF10135 ALFP_1209 ALFP_1210 PF00460 Flagella basal body rod protein ALFP_1210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALFP_1211 PF00669 Bacterial flagellin N-terminal helical region ALFP_1212 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_1212 PF00672 HAMP domain ALFP_1214 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_1214 PF00672 HAMP domain ALFP_1214 PF02203 Tar ligand binding domain homologue ALFP_1215 PF00027 Cyclic nucleotide-binding domain ALFP_1215 PF00571 CBS domain ALFP_1215 PF03445 ALFP_1215 ALFP_1215 PF10335 ALFP_1215 ALFP_1216 PF00929 Exonuclease ALFP_1217 PF01311 ALFP_1217 ALFP_1218 PF01313 ALFP_1218 ALFP_1219 PF00813 ALFP_1219 ALFP_1220 PF04347 ALFP_1220 ALFP_1221 PF01052 Surface presentation of antigens (SPOA) ALFP_1222 PF01052 Surface presentation of antigens (SPOA) ALFP_1222 PF02154 Flagellar motor switch protein FliM ALFP_1223 PF03748 ALFP_1223 ALFP_1224 PF02120 Flagellar hook-length control protein FliK ALFP_1225 PF02050 Flagellar FliJ protein ALFP_1226 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALFP_1227 PF02108 ALFP_1227 ALFP_1228 PF01706 FliG C-terminal domain ALFP_1228 PF14841 FliG middle domain ALFP_1228 PF14842 FliG N-terminal domain ALFP_1229 PF01514 Secretory protein of YscJ/FliF family ALFP_1229 PF08345 ALFP_1229 ALFP_1230 PF02049 ALFP_1230 ALFP_1231 PF01312 FlhB HrpN YscU SpaS Family ALFP_1232 PF02120 Flagellar hook-length control protein FliK ALFP_1233 PF05400 Flagellar protein FliT ALFP_1234 PF02561 Flagellar protein FliS ALFP_1235 PF02465 ALFP_1235 ALFP_1235 PF07195 ALFP_1235 ALFP_1236 PF03646 FlaG protein ALFP_1237 PF04539 Sigma-70 region 3 ALFP_1237 PF04542 Sigma-70 region 2 ALFP_1237 PF04545 Sigma-70, region 4 ALFP_1239 PF13469 Sulfotransferase family ALFP_1239 PF13847 Methyltransferase domain ALFP_1239 PF14559 Tetratricopeptide repeat ALFP_1240 PF00669 Bacterial flagellin N-terminal helical region ALFP_1240 PF00700 Bacterial flagellin C-terminal helical region ALFP_1241 PF05787 Bacterial protein of unknown function (DUF839) ALFP_1243 PF07520 ALFP_1243 ALFP_1244 PF10139 ALFP_1244 ALFP_1246 PF00092 von Willebrand factor type A domain ALFP_1247 PF00005 ABC transporter ALFP_1249 PF03781 Sulfatase-modifying factor enzyme 1 ALFP_1252 PF13519 von Willebrand factor type A domain ALFP_1253 PF04286 ALFP_1253 ALFP_1254 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_1254 PF08447 PAS fold ALFP_1255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_1255 PF08447 PAS fold ALFP_1257 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ALFP_1257 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ALFP_1258 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_1260 PF02447 ALFP_1260 ALFP_1261 PF01610 ALFP_1261 ALFP_1261 PF14690 ALFP_1261 ALFP_1262 PF00589 Phage integrase family ALFP_1263 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_1264 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_1265 PF00884 Sulfatase ALFP_1266 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1266 PF03466 LysR substrate binding domain ALFP_1267 PF16576 ALFP_1267 ALFP_1268 PF00873 AcrB/AcrD/AcrF family ALFP_1269 PF02321 Outer membrane efflux protein ALFP_1270 PF09084 NMT1/THI5 like ALFP_1271 PF00005 ABC transporter ALFP_1272 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1273 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_1274 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1274 PF03466 LysR substrate binding domain ALFP_1275 PF01614 Bacterial transcriptional regulator ALFP_1275 PF09339 IclR helix-turn-helix domain ALFP_1276 PF01425 Amidase ALFP_1277 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_1278 PF04290 ALFP_1278 ALFP_1279 PF06808 ALFP_1279 ALFP_1280 PF03831 PhnA protein ALFP_1280 PF08274 PhnA Zinc-Ribbon ALFP_1281 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_1282 PF06808 ALFP_1282 ALFP_1283 PF04290 ALFP_1283 ALFP_1284 PF00324 Amino acid permease ALFP_1285 PF00581 Rhodanese-like domain ALFP_1285 PF09335 ALFP_1285 ALFP_1286 PF07681 ALFP_1286 ALFP_1287 PF00892 EamA-like transporter family ALFP_1288 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1288 PF03466 LysR substrate binding domain ALFP_1289 PF07007 Protein of unknown function (DUF1311) ALFP_1290 PF00230 Major intrinsic protein ALFP_1291 PF11804 ALFP_1291 ALFP_1292 PF12365 ALFP_1292 ALFP_1293 PF03929 ALFP_1293 ALFP_1294 PF07158 ALFP_1294 ALFP_1295 PF00857 Isochorismatase family ALFP_1296 PF04143 ALFP_1296 ALFP_1297 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_1297 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding ALFP_1299 PF08770 Sulphur oxidation protein SoxZ ALFP_1300 PF13501 Sulfur oxidation protein SoxY ALFP_1301 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_1302 PF00313 'Cold-shock' DNA-binding domain ALFP_1303 PF00512 His Kinase A (phospho-acceptor) domain ALFP_1303 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_1303 PF08521 ALFP_1303 ALFP_1304 PF00072 Response regulator receiver domain ALFP_1304 PF00486 Transcriptional regulatory protein, C terminal ALFP_1305 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_1306 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO ALFP_1307 PF00034 Cytochrome c ALFP_1308 PF00034 Cytochrome c ALFP_1310 PF01548 ALFP_1310 ALFP_1310 PF02371 ALFP_1310 ALFP_1312 PF01548 ALFP_1312 ALFP_1312 PF02371 ALFP_1312 ALFP_1313 PF00149 Calcineurin-like phosphoesterase ALFP_1314 PF00593 TonB dependent receptor ALFP_1314 PF07660 Secretin and TonB N terminus short domain ALFP_1314 PF07715 TonB-dependent Receptor Plug Domain ALFP_1315 PF04773 FecR protein ALFP_1315 PF16220 ALFP_1315 ALFP_1315 PF16344 ALFP_1315 ALFP_1316 PF08281 Sigma-70, region 4 ALFP_1317 PF00266 Aminotransferase class-V ALFP_1318 PF02321 Outer membrane efflux protein ALFP_1319 PF01914 ALFP_1319 ALFP_1320 PF01979 Amidohydrolase family ALFP_1321 PF00999 Sodium/hydrogen exchanger family ALFP_1322 PF17090 ALFP_1322 ALFP_1323 PF13437 HlyD family secretion protein ALFP_1323 PF13533 Biotin-lipoyl like ALFP_1324 PF04632 ALFP_1324 ALFP_1326 PF00860 Permease family ALFP_1327 PF12710 haloacid dehalogenase-like hydrolase ALFP_1328 PF03729 ALFP_1328 ALFP_1329 PF04314 Protein of unknown function (DUF461) ALFP_1330 PF02630 SCO1/SenC ALFP_1332 PF01645 Conserved region in glutamate synthase ALFP_1333 PF04632 ALFP_1333 ALFP_1334 PF01047 MarR family ALFP_1335 PF02464 Competence-damaged protein ALFP_1336 PF00330 Aconitase family (aconitate hydratase) ALFP_1336 PF00694 Aconitase C-terminal domain ALFP_1337 PF00392 Bacterial regulatory proteins, gntR family ALFP_1337 PF07729 FCD domain ALFP_1338 PF04303 PrpF protein ALFP_1339 PF12833 Helix-turn-helix domain ALFP_1339 PF14525 ALFP_1339 ALFP_1340 PF13458 Periplasmic binding protein ALFP_1341 PF00355 Rieske [2Fe-2S] domain ALFP_1341 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_1342 PF00866 Ring hydroxylating beta subunit ALFP_1343 PF00857 Isochorismatase family ALFP_1344 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_1345 PF01593 Flavin containing amine oxidoreductase ALFP_1346 PF00924 Mechanosensitive ion channel ALFP_1346 PF12607 ALFP_1346 ALFP_1347 PF00924 Mechanosensitive ion channel ALFP_1348 PF00083 Sugar (and other) transporter ALFP_1349 PF00266 Aminotransferase class-V ALFP_1351 PF01381 Helix-turn-helix ALFP_1351 PF07883 Cupin domain ALFP_1352 PF00072 Response regulator receiver domain ALFP_1352 PF01966 HD domain ALFP_1353 PF00072 Response regulator receiver domain ALFP_1353 PF00512 His Kinase A (phospho-acceptor) domain ALFP_1353 PF00989 PAS fold ALFP_1353 PF01627 Hpt domain ALFP_1353 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_1353 PF03707 ALFP_1353 ALFP_1354 PF00571 CBS domain ALFP_1354 PF01769 Divalent cation transporter ALFP_1354 PF03448 MgtE intracellular N domain ALFP_1357 PF06965 Na+/H+ antiporter 1 ALFP_1358 PF02580 D-Tyr-tRNA(Tyr) deacylase ALFP_1359 PF00893 Small Multidrug Resistance protein ALFP_1360 PF09335 ALFP_1360 ALFP_1361 PF00583 Acetyltransferase (GNAT) family ALFP_1364 PF01435 Peptidase family M48 ALFP_1365 PF07690 Major Facilitator Superfamily ALFP_1368 PF04076 Bacterial OB fold (BOF) protein ALFP_1369 PF04342 ALFP_1369 ALFP_1370 PF03724 META domain ALFP_1370 PF14302 ALFP_1370 ALFP_1371 PF04391 ALFP_1371 ALFP_1372 PF13458 Periplasmic binding protein ALFP_1373 PF13031 ALFP_1373 ALFP_1374 PF00929 Exonuclease ALFP_1374 PF12843 ALFP_1374 ALFP_1375 PF00990 GGDEF domain ALFP_1377 PF03473 MOSC domain ALFP_1377 PF03476 MOSC N-terminal beta barrel domain ALFP_1378 PF01037 AsnC family ALFP_1378 PF13412 Winged helix-turn-helix DNA-binding ALFP_1379 PF01053 Cys/Met metabolism PLP-dependent enzyme ALFP_1381 PF00293 NUDIX domain ALFP_1382 PF04304 ALFP_1382 ALFP_1383 PF02627 Carboxymuconolactone decarboxylase family ALFP_1384 PF00764 Arginosuccinate synthase ALFP_1385 PF00149 Calcineurin-like phosphoesterase ALFP_1386 PF00005 ABC transporter ALFP_1386 PF08402 TOBE domain ALFP_1387 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1388 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1389 PF13343 Bacterial extracellular solute-binding protein ALFP_1390 PF00356 Bacterial regulatory proteins, lacI family ALFP_1390 PF13377 Periplasmic binding protein-like domain ALFP_1391 PF09604 ALFP_1391 ALFP_1393 PF03814 ALFP_1393 ALFP_1394 PF02669 ALFP_1394 ALFP_1395 PF00122 E1-E2 ATPase ALFP_1395 PF00702 haloacid dehalogenase-like hydrolase ALFP_1396 PF00512 His Kinase A (phospho-acceptor) domain ALFP_1396 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_1396 PF02702 Osmosensitive K+ channel His kinase sensor domain ALFP_1396 PF13493 Domain of unknown function (DUF4118) ALFP_1397 PF00072 Response regulator receiver domain ALFP_1397 PF00486 Transcriptional regulatory protein, C terminal ALFP_1398 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ALFP_1398 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ALFP_1399 PF12112 Protein of unknown function (DUF3579) ALFP_1400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALFP_1400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_1401 PF01649 Ribosomal protein S20 ALFP_1402 PF03023 ALFP_1402 ALFP_1403 PF00106 short chain dehydrogenase ALFP_1404 PF00406 Adenylate kinase ALFP_1404 PF05191 Adenylate kinase, active site lid ALFP_1405 PF02348 Cytidylyltransferase ALFP_1406 PF03966 Trm112p-like protein ALFP_1407 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ALFP_1408 PF02472 Biopolymer transport protein ExbD/TolR ALFP_1409 PF01618 ALFP_1409 ALFP_1410 PF02601 ALFP_1410 ALFP_1410 PF13742 ALFP_1410 ALFP_1411 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ALFP_1411 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ALFP_1412 PF00210 Ferritin-like domain ALFP_1413 PF00108 Thiolase, N-terminal domain ALFP_1413 PF02803 Thiolase, C-terminal domain ALFP_1414 PF02643 Uncharacterized ACR, COG1430 ALFP_1415 PF00313 'Cold-shock' DNA-binding domain ALFP_1416 PF02617 ATP-dependent Clp protease adaptor protein ClpS ALFP_1417 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_1417 PF02861 Clp amino terminal domain ALFP_1417 PF07724 AAA domain (Cdc48 subfamily) ALFP_1417 PF10431 C-terminal, D2-small domain, of ClpB protein ALFP_1418 PF04403 ALFP_1418 ALFP_1420 PF02470 ALFP_1420 ALFP_1421 PF03886 Protein of unknown function (DUF330) ALFP_1422 PF00171 Aldehyde dehydrogenase family ALFP_1422 PF01619 Proline dehydrogenase ALFP_1422 PF14850 DNA-binding domain of Proline dehydrogenase ALFP_1423 PF13458 Periplasmic binding protein ALFP_1424 PF02653 ALFP_1424 ALFP_1425 PF02653 ALFP_1425 ALFP_1426 PF00005 ABC transporter ALFP_1426 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_1427 PF00005 ABC transporter ALFP_1427 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_1431 PF01965 DJ-1/PfpI family ALFP_1432 PF05971 Protein of unknown function (DUF890) ALFP_1433 PF00692 dUTPase ALFP_1434 PF02441 Flavoprotein ALFP_1434 PF04127 DNA / pantothenate metabolism flavoprotein ALFP_1435 PF01252 ALFP_1435 ALFP_1436 PF00133 tRNA synthetases class I (I, L, M and V) ALFP_1436 PF06827 Zinc finger found in FPG and IleRS ALFP_1436 PF08264 Anticodon-binding domain of tRNA ALFP_1437 PF01687 Riboflavin kinase ALFP_1437 PF06574 FAD synthetase ALFP_1438 PF00551 Formyl transferase ALFP_1439 PF01189 NOL1/NOP2/sun family ALFP_1440 PF00487 ALFP_1440 ALFP_1441 PF00580 UvrD/REP helicase N-terminal domain ALFP_1441 PF13361 UvrD-like helicase C-terminal domain ALFP_1442 PF00174 Oxidoreductase molybdopterin binding domain ALFP_1442 PF03404 Mo-co oxidoreductase dimerisation domain ALFP_1443 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_1444 PF09423 PhoD-like phosphatase ALFP_1446 PF00440 Bacterial regulatory proteins, tetR family ALFP_1446 PF02909 Tetracyclin repressor, C-terminal all-alpha domain ALFP_1447 PF00529 HlyD family secretion protein ALFP_1447 PF16576 ALFP_1447 ALFP_1448 PF07690 Major Facilitator Superfamily ALFP_1449 PF13663 ALFP_1449 ALFP_1450 PF07690 Major Facilitator Superfamily ALFP_1451 PF00440 Bacterial regulatory proteins, tetR family ALFP_1452 PF00005 ABC transporter ALFP_1452 PF12848 ABC transporter ALFP_1453 PF05175 Methyltransferase small domain ALFP_1454 PF01546 Peptidase family M20/M25/M40 ALFP_1454 PF07687 Peptidase dimerisation domain ALFP_1455 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_1455 PF14602 Hexapeptide repeat of succinyl-transferase ALFP_1455 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ALFP_1457 PF02311 AraC-like ligand binding domain ALFP_1457 PF12833 Helix-turn-helix domain ALFP_1458 PF01925 ALFP_1458 ALFP_1459 PF02080 TrkA-C domain ALFP_1459 PF03600 Citrate transporter ALFP_1460 PF03061 Thioesterase superfamily ALFP_1462 PF06476 ALFP_1462 ALFP_1463 PF01223 DNA/RNA non-specific endonuclease ALFP_1466 PF01758 Sodium Bile acid symporter family ALFP_1467 PF02293 AmiS/UreI family transporter ALFP_1468 PF13411 MerR HTH family regulatory protein ALFP_1469 PF07690 Major Facilitator Superfamily ALFP_1470 PF02515 CoA-transferase family III ALFP_1471 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALFP_1471 PF05697 Bacterial trigger factor protein (TF) ALFP_1471 PF05698 Bacterial trigger factor protein (TF) C-terminus ALFP_1472 PF00574 Clp protease ALFP_1473 PF06689 ClpX C4-type zinc finger ALFP_1473 PF07724 AAA domain (Cdc48 subfamily) ALFP_1473 PF10431 C-terminal, D2-small domain, of ClpB protein ALFP_1474 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_1474 PF02190 ATP-dependent protease La (LON) domain ALFP_1474 PF05362 Lon protease (S16) C-terminal proteolytic domain ALFP_1476 PF00717 Peptidase S24-like ALFP_1476 PF01726 LexA DNA binding domain ALFP_1477 PF13302 Acetyltransferase (GNAT) domain ALFP_1478 PF00155 Aminotransferase class I and II ALFP_1479 PF00271 Helicase conserved C-terminal domain ALFP_1479 PF02151 UvrB/uvrC motif ALFP_1479 PF04851 Type III restriction enzyme, res subunit ALFP_1479 PF12344 Ultra-violet resistance protein B ALFP_1480 PF01451 Low molecular weight phosphotyrosine protein phosphatase ALFP_1483 PF00266 Aminotransferase class-V ALFP_1484 PF01592 NifU-like N terminal domain ALFP_1485 PF01521 Iron-sulphur cluster biosynthesis ALFP_1488 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_1489 PF00152 tRNA synthetases class II (D, K and N) ALFP_1489 PF01336 OB-fold nucleic acid binding domain ALFP_1490 PF00106 short chain dehydrogenase ALFP_1491 PF00472 RF-1 domain ALFP_1491 PF03462 PCRF domain ALFP_1492 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_1493 PF01176 Translation initiation factor 1A / IF-1 ALFP_1494 PF00892 EamA-like transporter family ALFP_1495 PF01758 Sodium Bile acid symporter family ALFP_1496 PF00892 EamA-like transporter family ALFP_1497 PF01368 DHH family ALFP_1497 PF02272 DHHA1 domain ALFP_1499 PF02687 ALFP_1499 ALFP_1499 PF12704 MacB-like periplasmic core domain ALFP_1500 PF00005 ABC transporter ALFP_1501 PF01026 TatD related DNase ALFP_1502 PF00753 Metallo-beta-lactamase superfamily ALFP_1502 PF03772 ALFP_1502 ALFP_1502 PF13567 ALFP_1502 ALFP_1503 PF12697 Alpha/beta hydrolase family ALFP_1504 PF02811 PHP domain ALFP_1505 PF01272 Transcription elongation factor, GreA/GreB, C-term ALFP_1505 PF03449 Transcription elongation factor, N-terminal ALFP_1506 PF02769 AIR synthase related protein, C-terminal domain ALFP_1506 PF13507 CobB/CobQ-like glutamine amidotransferase domain ALFP_1507 PF00478 IMP dehydrogenase / GMP reductase domain ALFP_1507 PF00571 CBS domain ALFP_1509 PF00892 EamA-like transporter family ALFP_1510 PF02311 AraC-like ligand binding domain ALFP_1510 PF12833 Helix-turn-helix domain ALFP_1511 PF12697 Alpha/beta hydrolase family ALFP_1512 PF00117 Glutamine amidotransferase class-I ALFP_1512 PF00958 GMP synthase C terminal domain ALFP_1512 PF02540 NAD synthase ALFP_1513 PF01527 Transposase ALFP_1514 PF00665 Integrase core domain ALFP_1514 PF13276 ALFP_1514 ALFP_1521 PF00691 OmpA family ALFP_1521 PF16234 ALFP_1521 ALFP_1524 PF12680 SnoaL-like domain ALFP_1525 PF13419 Haloacid dehalogenase-like hydrolase ALFP_1526 PF00440 Bacterial regulatory proteins, tetR family ALFP_1527 PF00893 Small Multidrug Resistance protein ALFP_1528 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_1529 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1529 PF03466 LysR substrate binding domain ALFP_1530 PF01717 Cobalamin-independent synthase, Catalytic domain ALFP_1530 PF08267 Cobalamin-independent synthase, N-terminal domain ALFP_1531 PF08908 ALFP_1531 ALFP_1532 PF01717 Cobalamin-independent synthase, Catalytic domain ALFP_1533 PF00440 Bacterial regulatory proteins, tetR family ALFP_1534 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_1534 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_1535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_1537 PF08279 HTH domain ALFP_1537 PF13280 ALFP_1537 ALFP_1538 PF02492 CobW/HypB/UreG, nucleotide-binding domain ALFP_1538 PF07683 Cobalamin synthesis protein cobW C-terminal domain ALFP_1539 PF02649 Type I GTP cyclohydrolase folE2 ALFP_1541 PF02657 Fe-S metabolism associated domain ALFP_1542 PF01979 Amidohydrolase family ALFP_1543 PF01475 Ferric uptake regulator family ALFP_1544 PF01502 Phosphoribosyl-AMP cyclohydrolase ALFP_1545 PF01970 ALFP_1545 ALFP_1546 PF07331 ALFP_1546 ALFP_1547 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_1548 PF00072 Response regulator receiver domain ALFP_1548 PF00486 Transcriptional regulatory protein, C terminal ALFP_1549 PF08543 Phosphomethylpyrimidine kinase ALFP_1550 PF00293 NUDIX domain ALFP_1551 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1551 PF03466 LysR substrate binding domain ALFP_1552 PF04632 ALFP_1552 ALFP_1553 PF07869 ALFP_1553 ALFP_1554 PF13437 HlyD family secretion protein ALFP_1554 PF13533 Biotin-lipoyl like ALFP_1555 PF02321 Outer membrane efflux protein ALFP_1556 PF14552 Tautomerase enzyme ALFP_1557 PF00042 Globin ALFP_1557 PF00175 Oxidoreductase NAD-binding domain ALFP_1557 PF00970 Oxidoreductase FAD-binding domain ALFP_1558 PF00171 Aldehyde dehydrogenase family ALFP_1559 PF04341 ALFP_1559 ALFP_1560 PF00474 Sodium:solute symporter family ALFP_1561 PF01292 Prokaryotic cytochrome b561 ALFP_1562 PF03060 Nitronate monooxygenase ALFP_1563 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1563 PF03466 LysR substrate binding domain ALFP_1564 PF12833 Helix-turn-helix domain ALFP_1568 PF00440 Bacterial regulatory proteins, tetR family ALFP_1569 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase ALFP_1570 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_1571 PF02798 Glutathione S-transferase, N-terminal domain ALFP_1571 PF13410 Glutathione S-transferase, C-terminal domain ALFP_1572 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1572 PF03466 LysR substrate binding domain ALFP_1573 PF04234 CopC domain ALFP_1573 PF05425 ALFP_1573 ALFP_1574 PF07987 Domain of unkown function (DUF1775) ALFP_1576 PF00043 Glutathione S-transferase, C-terminal domain ALFP_1576 PF13417 Glutathione S-transferase, N-terminal domain ALFP_1577 PF00574 Clp protease ALFP_1578 PF04575 ALFP_1578 ALFP_1580 PF00593 TonB dependent receptor ALFP_1580 PF07715 TonB-dependent Receptor Plug Domain ALFP_1581 PF12833 Helix-turn-helix domain ALFP_1582 PF13489 Methyltransferase domain ALFP_1583 PF07690 Major Facilitator Superfamily ALFP_1584 PF00581 Rhodanese-like domain ALFP_1584 PF00899 ThiF family ALFP_1585 PF14464 Prokaryotic homologs of the JAB domain ALFP_1586 PF02597 ThiS family ALFP_1587 PF02515 CoA-transferase family III ALFP_1588 PF00501 AMP-binding enzyme ALFP_1588 PF13193 AMP-binding enzyme C-terminal domain ALFP_1589 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_1589 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_1589 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_1590 PF07690 Major Facilitator Superfamily ALFP_1592 PF02635 DsrE/DsrF-like family ALFP_1593 PF02627 Carboxymuconolactone decarboxylase family ALFP_1594 PF01022 Bacterial regulatory protein, arsR family ALFP_1595 PF11127 Protein of unknown function (DUF2892) ALFP_1596 PF06414 Zeta toxin ALFP_1598 PF02311 AraC-like ligand binding domain ALFP_1598 PF12833 Helix-turn-helix domain ALFP_1599 PF00682 HMGL-like ALFP_1599 PF08502 LeuA allosteric (dimerisation) domain ALFP_1600 PF12802 MarR family ALFP_1601 PF12146 Putative lysophospholipase ALFP_1602 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1602 PF03466 LysR substrate binding domain ALFP_1603 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ALFP_1603 PF13378 Enolase C-terminal domain-like ALFP_1604 PF00775 Dioxygenase ALFP_1604 PF04444 Catechol dioxygenase N terminus ALFP_1605 PF01144 Coenzyme A transferase ALFP_1606 PF01144 Coenzyme A transferase ALFP_1607 PF00561 alpha/beta hydrolase fold ALFP_1608 PF02426 Muconolactone delta-isomerase ALFP_1609 PF03594 ALFP_1609 ALFP_1610 PF01926 50S ribosome-binding GTPase ALFP_1611 PF01926 50S ribosome-binding GTPase ALFP_1612 PF02535 ALFP_1612 ALFP_1613 PF00005 ABC transporter ALFP_1614 PF00850 Histone deacetylase domain ALFP_1615 PF00196 Bacterial regulatory proteins, luxR family ALFP_1616 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ALFP_1616 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ALFP_1619 PF02585 GlcNAc-PI de-N-acetylase ALFP_1621 PF05940 ALFP_1621 ALFP_1622 PF01047 MarR family ALFP_1623 PF01494 FAD binding domain ALFP_1624 PF07690 Major Facilitator Superfamily ALFP_1626 PF01168 Alanine racemase, N-terminal domain ALFP_1627 PF00155 Aminotransferase class I and II ALFP_1627 PF00392 Bacterial regulatory proteins, gntR family ALFP_1628 PF00892 EamA-like transporter family ALFP_1629 PF12802 MarR family ALFP_1630 PF08774 VRR-NUC domain ALFP_1631 PF06733 DEAD_2 ALFP_1631 PF13307 Helicase C-terminal domain ALFP_1633 PF00890 FAD binding domain ALFP_1634 PF02445 Quinolinate synthetase A protein ALFP_1635 PF00248 Aldo/keto reductase family ALFP_1636 PF03692 ALFP_1636 ALFP_1639 PF00959 Phage lysozyme ALFP_1640 PF12833 Helix-turn-helix domain ALFP_1642 PF12706 Beta-lactamase superfamily domain ALFP_1643 PF00857 Isochorismatase family ALFP_1644 PF04972 BON domain ALFP_1645 PF02586 Uncharacterised ACR, COG2135 ALFP_1649 PF03006 ALFP_1649 ALFP_1650 PF07411 Domain of unknown function (DUF1508) ALFP_1651 PF01042 Endoribonuclease L-PSP ALFP_1652 PF04828 Glutathione-dependent formaldehyde-activating enzyme ALFP_1653 PF08212 Lipocalin-like domain ALFP_1654 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_1655 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1656 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1657 PF00005 ABC transporter ALFP_1662 PF00158 Sigma-54 interaction domain ALFP_1662 PF02830 V4R domain ALFP_1662 PF02954 Bacterial regulatory protein, Fis family ALFP_1662 PF06505 ALFP_1662 ALFP_1663 PF06099 ALFP_1663 ALFP_1664 PF02332 Methane/Phenol/Toluene Hydroxylase ALFP_1665 PF02406 MmoB/DmpM family ALFP_1666 PF02332 Methane/Phenol/Toluene Hydroxylase ALFP_1666 PF04945 YHS domain ALFP_1667 PF04663 Phenol hydroxylase conserved region ALFP_1668 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_1668 PF00175 Oxidoreductase NAD-binding domain ALFP_1668 PF00970 Oxidoreductase FAD-binding domain ALFP_1669 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1669 PF03466 LysR substrate binding domain ALFP_1670 PF00355 Rieske [2Fe-2S] domain ALFP_1670 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_1671 PF00866 Ring hydroxylating beta subunit ALFP_1672 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_1672 PF00175 Oxidoreductase NAD-binding domain ALFP_1672 PF00970 Oxidoreductase FAD-binding domain ALFP_1673 PF00106 short chain dehydrogenase ALFP_1674 PF07690 Major Facilitator Superfamily ALFP_1675 PF01810 ALFP_1675 ALFP_1678 PF13377 Periplasmic binding protein-like domain ALFP_1679 PF01925 ALFP_1679 ALFP_1680 PF01979 Amidohydrolase family ALFP_1681 PF00860 Permease family ALFP_1685 PF01145 SPFH domain / Band 7 family ALFP_1686 PF01957 NfeD-like C-terminal, partner-binding ALFP_1687 PF13649 Methyltransferase domain ALFP_1688 PF14903 ALFP_1688 ALFP_1689 PF03891 ALFP_1689 ALFP_1691 PF00294 pfkB family carbohydrate kinase ALFP_1695 PF03891 ALFP_1695 ALFP_1696 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALFP_1696 PF02824 TGS domain ALFP_1696 PF03129 Anticodon binding domain ALFP_1696 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALFP_1697 PF00707 Translation initiation factor IF-3, C-terminal domain ALFP_1697 PF05198 Translation initiation factor IF-3, N-terminal domain ALFP_1698 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ALFP_1698 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ALFP_1699 PF03610 PTS system fructose IIA component ALFP_1700 PF00381 PTS HPr component phosphorylation site ALFP_1701 PF00391 PEP-utilising enzyme, mobile domain ALFP_1701 PF02896 PEP-utilising enzyme, TIM barrel domain ALFP_1701 PF05524 PEP-utilising enzyme, N-terminal ALFP_1703 PF04380 ALFP_1703 ALFP_1704 PF07690 Major Facilitator Superfamily ALFP_1705 PF13599 Pentapeptide repeats (9 copies) ALFP_1706 PF01078 Magnesium chelatase, subunit ChlI ALFP_1706 PF13335 ALFP_1706 ALFP_1706 PF13541 Subunit ChlI of Mg-chelatase ALFP_1707 PF01632 Ribosomal protein L35 ALFP_1708 PF00453 Ribosomal protein L20 ALFP_1709 PF01409 tRNA synthetases class II core domain (F) ALFP_1709 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ALFP_1710 PF01588 Putative tRNA binding domain ALFP_1710 PF03147 Ferredoxin-fold anticodon binding domain ALFP_1710 PF03483 B3/4 domain ALFP_1710 PF03484 tRNA synthetase B5 domain ALFP_1711 PF00216 Bacterial DNA-binding protein ALFP_1712 PF13411 MerR HTH family regulatory protein ALFP_1713 PF04305 ALFP_1713 ALFP_1714 PF04542 Sigma-70 region 2 ALFP_1714 PF10099 ALFP_1714 ALFP_1715 PF00005 ABC transporter ALFP_1715 PF00664 ABC transporter transmembrane region ALFP_1716 PF02082 Transcriptional regulator ALFP_1717 PF01458 Uncharacterized protein family (UPF0051) ALFP_1718 PF00005 ABC transporter ALFP_1719 PF01458 Uncharacterized protein family (UPF0051) ALFP_1720 PF00266 Aminotransferase class-V ALFP_1721 PF01592 NifU-like N terminal domain ALFP_1722 PF01883 Domain of unknown function DUF59 ALFP_1724 PF00486 Transcriptional regulatory protein, C terminal ALFP_1726 PF02321 Outer membrane efflux protein ALFP_1728 PF00005 ABC transporter ALFP_1728 PF00664 ABC transporter transmembrane region ALFP_1729 PF13437 HlyD family secretion protein ALFP_1733 PF02875 Mur ligase family, glutamate ligase domain ALFP_1733 PF08245 Mur ligase middle domain ALFP_1733 PF09587 Bacterial capsule synthesis protein PGA_cap ALFP_1734 PF00768 D-alanyl-D-alanine carboxypeptidase ALFP_1734 PF02875 Mur ligase family, glutamate ligase domain ALFP_1734 PF08245 Mur ligase middle domain ALFP_1735 PF01820 D-ala D-ala ligase N-terminus ALFP_1735 PF07478 D-ala D-ala ligase C-terminus ALFP_1736 PF01380 SIS domain ALFP_1736 PF01418 Helix-turn-helix domain, rpiR family ALFP_1737 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_1738 PF01546 Peptidase family M20/M25/M40 ALFP_1738 PF07687 Peptidase dimerisation domain ALFP_1739 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALFP_1740 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1741 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1741 PF12911 ALFP_1741 ALFP_1742 PF00005 ABC transporter ALFP_1742 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALFP_1743 PF00795 Carbon-nitrogen hydrolase ALFP_1744 PF01546 Peptidase family M20/M25/M40 ALFP_1744 PF07687 Peptidase dimerisation domain ALFP_1745 PF07171 MlrC C-terminus ALFP_1745 PF07364 Protein of unknown function (DUF1485) ALFP_1746 PF00589 Phage integrase family ALFP_1747 PF10765 Protein of unknown function (DUF2591) ALFP_1748 PF04448 ALFP_1748 ALFP_1751 PF00042 Globin ALFP_1751 PF00175 Oxidoreductase NAD-binding domain ALFP_1751 PF00970 Oxidoreductase FAD-binding domain ALFP_1752 PF02082 Transcriptional regulator ALFP_1753 PF04381 Putative exonuclease, RdgC ALFP_1755 PF00436 Single-strand binding protein family ALFP_1760 PF13274 ALFP_1760 ALFP_1762 PF00717 Peptidase S24-like ALFP_1767 PF05772 NinB protein ALFP_1769 PF13730 ALFP_1769 ALFP_1772 PF06356 ALFP_1772 ALFP_1773 PF13328 HD domain ALFP_1775 PF07693 ALFP_1775 ALFP_1776 PF03592 Terminase small subunit ALFP_1777 PF04466 Phage terminase large subunit ALFP_1777 PF17288 ALFP_1777 ALFP_1778 PF06381 ALFP_1778 ALFP_1779 PF09979 ALFP_1779 ALFP_1781 PF09950 ALFP_1781 ALFP_1787 PF13554 Bacteriophage related domain of unknown function ALFP_1789 PF04383 KilA-N domain ALFP_1795 PF09718 ALFP_1795 ALFP_1800 PF00246 Zinc carboxypeptidase ALFP_1804 PF00959 Phage lysozyme ALFP_1807 PF02586 Uncharacterised ACR, COG2135 ALFP_1810 PF08857 Putative ParB-like nuclease ALFP_1813 PF00593 TonB dependent receptor ALFP_1813 PF07715 TonB-dependent Receptor Plug Domain ALFP_1815 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_1816 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_1817 PF00034 Cytochrome c ALFP_1818 PF01266 FAD dependent oxidoreductase ALFP_1820 PF07883 Cupin domain ALFP_1820 PF12844 Helix-turn-helix domain ALFP_1821 PF03781 Sulfatase-modifying factor enzyme 1 ALFP_1824 PF02386 Cation transport protein ALFP_1825 PF02080 TrkA-C domain ALFP_1825 PF02254 TrkA-N domain ALFP_1826 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALFP_1827 PF03061 Thioesterase superfamily ALFP_1828 PF09424 Yqey-like protein ALFP_1829 PF02811 PHP domain ALFP_1829 PF07733 Bacterial DNA polymerase III alpha subunit ALFP_1829 PF14579 Helix-hairpin-helix motif ALFP_1832 PF03942 ALFP_1832 ALFP_1834 PF05742 ALFP_1834 ALFP_1835 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ALFP_1836 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_1837 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1837 PF03466 LysR substrate binding domain ALFP_1838 PF00768 D-alanyl-D-alanine carboxypeptidase ALFP_1839 PF06366 ALFP_1839 ALFP_1840 PF01618 ALFP_1840 ALFP_1841 PF00691 OmpA family ALFP_1841 PF13677 ALFP_1841 ALFP_1842 PF00474 Sodium:solute symporter family ALFP_1843 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_1844 PF00296 Luciferase-like monooxygenase ALFP_1845 PF00106 short chain dehydrogenase ALFP_1846 PF00677 Lumazine binding domain ALFP_1847 PF13521 AAA domain ALFP_1848 PF00384 Molybdopterin oxidoreductase ALFP_1848 PF01568 Molydopterin dinucleotide binding domain ALFP_1849 PF03916 ALFP_1849 ALFP_1850 PF13247 4Fe-4S dicluster domain ALFP_1851 PF00593 TonB dependent receptor ALFP_1851 PF07715 TonB-dependent Receptor Plug Domain ALFP_1852 PF09723 ALFP_1852 ALFP_1853 PF03069 Acetamidase/Formamidase family ALFP_1854 PF01979 Amidohydrolase family ALFP_1855 PF00860 Permease family ALFP_1856 PF00011 Hsp20/alpha crystallin family ALFP_1857 PF01546 Peptidase family M20/M25/M40 ALFP_1857 PF07687 Peptidase dimerisation domain ALFP_1858 PF02311 AraC-like ligand binding domain ALFP_1858 PF12833 Helix-turn-helix domain ALFP_1859 PF07690 Major Facilitator Superfamily ALFP_1860 PF07690 Major Facilitator Superfamily ALFP_1861 PF07859 alpha/beta hydrolase fold ALFP_1862 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_1863 PF01494 FAD binding domain ALFP_1864 PF01047 MarR family ALFP_1865 PF00293 NUDIX domain ALFP_1865 PF09297 NADH pyrophosphatase zinc ribbon domain ALFP_1866 PF03755 ALFP_1866 ALFP_1866 PF08340 ALFP_1866 ALFP_1867 PF00149 Calcineurin-like phosphoesterase ALFP_1868 PF13514 AAA domain ALFP_1869 PF01138 3' exoribonuclease family, domain 1 ALFP_1869 PF03725 3' exoribonuclease family, domain 2 ALFP_1870 PF01725 Ham1 family ALFP_1871 PF04055 Radical SAM superfamily ALFP_1871 PF06969 HemN C-terminal domain ALFP_1872 PF00120 Glutamine synthetase, catalytic domain ALFP_1872 PF03951 Glutamine synthetase, beta-Grasp domain ALFP_1873 PF13673 Acetyltransferase (GNAT) domain ALFP_1874 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1874 PF03466 LysR substrate binding domain ALFP_1875 PF07690 Major Facilitator Superfamily ALFP_1876 PF00462 Glutaredoxin ALFP_1876 PF07291 ALFP_1876 ALFP_1877 PF00005 ABC transporter ALFP_1878 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1879 PF13343 Bacterial extracellular solute-binding protein ALFP_1880 PF00175 Oxidoreductase NAD-binding domain ALFP_1880 PF00970 Oxidoreductase FAD-binding domain ALFP_1881 PF01042 Endoribonuclease L-PSP ALFP_1882 PF00270 DEAD/DEAH box helicase ALFP_1882 PF00271 Helicase conserved C-terminal domain ALFP_1882 PF17191 ALFP_1882 ALFP_1883 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1883 PF03466 LysR substrate binding domain ALFP_1884 PF00210 Ferritin-like domain ALFP_1885 PF13458 Periplasmic binding protein ALFP_1886 PF00005 ABC transporter ALFP_1886 PF08402 TOBE domain ALFP_1887 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1888 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_1889 PF13416 Bacterial extracellular solute-binding protein ALFP_1890 PF03807 NADP oxidoreductase coenzyme F420-dependent ALFP_1890 PF14748 Pyrroline-5-carboxylate reductase dimerisation ALFP_1891 PF13458 Periplasmic binding protein ALFP_1892 PF02653 ALFP_1892 ALFP_1893 PF02653 ALFP_1893 ALFP_1893 PF11862 ALFP_1893 ALFP_1894 PF00005 ABC transporter ALFP_1894 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_1895 PF00005 ABC transporter ALFP_1896 PF02798 Glutathione S-transferase, N-terminal domain ALFP_1896 PF14497 Glutathione S-transferase, C-terminal domain ALFP_1897 PF00326 Prolyl oligopeptidase family ALFP_1898 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALFP_1898 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_1899 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_1900 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALFP_1900 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALFP_1901 PF00206 Lyase ALFP_1901 PF10415 Fumarase C C-terminus ALFP_1902 PF07995 Glucose / Sorbosone dehydrogenase ALFP_1903 PF08241 Methyltransferase domain ALFP_1904 PF00582 Universal stress protein family ALFP_1905 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_1906 PF02311 AraC-like ligand binding domain ALFP_1906 PF12833 Helix-turn-helix domain ALFP_1907 PF00596 Class II Aldolase and Adducin N-terminal domain ALFP_1908 PF01042 Endoribonuclease L-PSP ALFP_1909 PF00171 Aldehyde dehydrogenase family ALFP_1910 PF01494 FAD binding domain ALFP_1911 PF07690 Major Facilitator Superfamily ALFP_1912 PF12796 Ankyrin repeats (3 copies) ALFP_1913 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1913 PF03466 LysR substrate binding domain ALFP_1914 PF13663 ALFP_1914 ALFP_1915 PF00122 E1-E2 ATPase ALFP_1915 PF00403 Heavy-metal-associated domain ALFP_1915 PF00702 haloacid dehalogenase-like hydrolase ALFP_1916 PF11071 ALFP_1916 ALFP_1917 PF04199 Putative cyclase ALFP_1919 PF13743 Thioredoxin ALFP_1920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_1920 PF03466 LysR substrate binding domain ALFP_1921 PF00589 Phage integrase family ALFP_1922 PF11740 ALFP_1922 ALFP_1925 PF07731 Multicopper oxidase ALFP_1925 PF07732 Multicopper oxidase ALFP_1926 PF02222 ATP-grasp domain ALFP_1928 PF03976 Polyphosphate kinase 2 (PPK2) ALFP_1929 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_1930 PF00583 Acetyltransferase (GNAT) family ALFP_1931 PF00589 Phage integrase family ALFP_1932 PF08020 Protein of unknown function (DUF1706) ALFP_1934 PF01292 Prokaryotic cytochrome b561 ALFP_1935 PF04264 YceI-like domain ALFP_1936 PF04264 YceI-like domain ALFP_1937 PF03960 ArsC family ALFP_1938 PF00043 Glutathione S-transferase, C-terminal domain ALFP_1938 PF02798 Glutathione S-transferase, N-terminal domain ALFP_1939 PF11738 Protein of unknown function (DUF3298) ALFP_1940 PF03358 NADPH-dependent FMN reductase ALFP_1940 PF10982 Protein of unknown function (DUF2789) ALFP_1941 PF12796 Ankyrin repeats (3 copies) ALFP_1942 PF01026 TatD related DNase ALFP_1943 PF13177 DNA polymerase III, delta subunit ALFP_1945 PF02618 YceG-like family ALFP_1946 PF01571 Aminomethyltransferase folate-binding domain ALFP_1947 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALFP_1947 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALFP_1948 PF16113 ALFP_1948 ALFP_1949 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_1949 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_1949 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_1950 PF01424 R3H domain ALFP_1950 PF03658 RnfH family Ubiquitin ALFP_1951 PF03364 Polyketide cyclase / dehydrase and lipid transport ALFP_1952 PF01668 SmpB protein ALFP_1953 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_1954 PF00440 Bacterial regulatory proteins, tetR family ALFP_1954 PF14246 AefR-like transcriptional repressor, C-terminal region ALFP_1955 PF00391 PEP-utilising enzyme, mobile domain ALFP_1955 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ALFP_1955 PF02896 PEP-utilising enzyme, TIM barrel domain ALFP_1956 PF03618 ALFP_1956 ALFP_1957 PF01425 Amidase ALFP_1958 PF00588 SpoU rRNA Methylase family ALFP_1959 PF01351 Ribonuclease HII ALFP_1960 PF02684 ALFP_1960 ALFP_1961 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_1961 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ALFP_1962 PF07977 FabA-like domain ALFP_1963 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_1963 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ALFP_1963 PF14602 Hexapeptide repeat of succinyl-transferase ALFP_1964 PF03938 Outer membrane protein (OmpH-like) ALFP_1965 PF01103 Surface antigen ALFP_1965 PF07244 Surface antigen variable number repeat ALFP_1966 PF02163 Peptidase family M50 ALFP_1966 PF13180 PDZ domain ALFP_1967 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ALFP_1967 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal ALFP_1967 PF13288 DXP reductoisomerase C-terminal domain ALFP_1968 PF01148 Cytidylyltransferase family ALFP_1969 PF01255 Putative undecaprenyl diphosphate synthase ALFP_1970 PF01765 Ribosome recycling factor ALFP_1971 PF00696 Amino acid kinase family ALFP_1972 PF00889 Elongation factor TS ALFP_1973 PF00318 Ribosomal protein S2 ALFP_1974 PF00557 Metallopeptidase family M24 ALFP_1975 PF01909 Nucleotidyltransferase domain ALFP_1975 PF01966 HD domain ALFP_1975 PF08335 GlnD PII-uridylyltransferase ALFP_1976 PF01914 ALFP_1976 ALFP_1977 PF02600 Disulfide bond formation protein DsbB ALFP_1978 PF00144 Beta-lactamase ALFP_1979 PF00156 Phosphoribosyl transferase domain ALFP_1979 PF13522 Glutamine amidotransferase domain ALFP_1980 PF02674 ALFP_1980 ALFP_1981 PF05036 Sporulation related domain ALFP_1982 PF02875 Mur ligase family, glutamate ligase domain ALFP_1982 PF08245 Mur ligase middle domain ALFP_1983 PF00364 Biotin-requiring enzyme ALFP_1983 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALFP_1983 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_1984 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALFP_1984 PF00364 Biotin-requiring enzyme ALFP_1984 PF02817 e3 binding domain ALFP_1985 PF00456 Transketolase, thiamine diphosphate binding domain ALFP_1986 PF00512 His Kinase A (phospho-acceptor) domain ALFP_1986 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_1986 PF08448 PAS fold ALFP_1986 PF13188 PAS domain ALFP_1987 PF00072 Response regulator receiver domain ALFP_1987 PF00196 Bacterial regulatory proteins, luxR family ALFP_1988 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ALFP_1988 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ALFP_1989 PF01432 Peptidase family M3 ALFP_1990 PF02630 SCO1/SenC ALFP_1991 PF00009 Elongation factor Tu GTP binding domain ALFP_1991 PF00679 Elongation factor G C-terminus ALFP_1991 PF03144 Elongation factor Tu domain 2 ALFP_1991 PF03764 Elongation factor G, domain IV ALFP_1991 PF14492 Elongation Factor G, domain II ALFP_1992 PF12840 Helix-turn-helix domain ALFP_1993 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALFP_1993 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_1994 PF13411 MerR HTH family regulatory protein ALFP_1995 PF00881 Nitroreductase family ALFP_1996 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ALFP_1997 PF02321 Outer membrane efflux protein ALFP_1998 PF00873 AcrB/AcrD/AcrF family ALFP_1999 PF13533 Biotin-lipoyl like ALFP_2000 PF00005 ABC transporter ALFP_2001 PF02653 ALFP_2001 ALFP_2002 PF04392 ABC transporter substrate binding protein ALFP_2004 PF02803 Thiolase, C-terminal domain ALFP_2005 PF00108 Thiolase, N-terminal domain ALFP_2006 PF00108 Thiolase, N-terminal domain ALFP_2006 PF02803 Thiolase, C-terminal domain ALFP_2007 PF00582 Universal stress protein family ALFP_2008 PF13714 Phosphoenolpyruvate phosphomutase ALFP_2010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2010 PF03466 LysR substrate binding domain ALFP_2011 PF01276 Orn/Lys/Arg decarboxylase, major domain ALFP_2011 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ALFP_2011 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ALFP_2013 PF03372 Endonuclease/Exonuclease/phosphatase family ALFP_2015 PF00625 Guanylate kinase ALFP_2016 PF01192 RNA polymerase Rpb6 ALFP_2017 PF02824 TGS domain ALFP_2017 PF04607 Region found in RelA / SpoT proteins ALFP_2017 PF13291 ACT domain ALFP_2017 PF13328 HD domain ALFP_2018 PF05437 ALFP_2018 ALFP_2019 PF03591 ALFP_2019 ALFP_2020 PF01551 Peptidase family M23 ALFP_2021 PF00639 PPIC-type PPIASE domain ALFP_2021 PF13624 SurA N-terminal domain ALFP_2022 PF03009 Glycerophosphoryl diester phosphodiesterase family ALFP_2023 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ ALFP_2024 PF00849 RNA pseudouridylate synthase ALFP_2024 PF01479 S4 domain ALFP_2025 PF04345 Chorismate lyase ALFP_2026 PF07690 Major Facilitator Superfamily ALFP_2027 PF00248 Aldo/keto reductase family ALFP_2028 PF00543 Nitrogen regulatory protein P-II ALFP_2029 PF00924 Mechanosensitive ion channel ALFP_2030 PF00206 Lyase ALFP_2030 PF14698 Argininosuccinate lyase C-terminal ALFP_2031 PF00480 ROK family ALFP_2032 PF01804 Penicillin amidase ALFP_2033 PF01266 FAD dependent oxidoreductase ALFP_2034 PF00440 Bacterial regulatory proteins, tetR family ALFP_2034 PF02909 Tetracyclin repressor, C-terminal all-alpha domain ALFP_2035 PF05958 tRNA (Uracil-5-)-methyltransferase ALFP_2036 PF01476 LysM domain ALFP_2036 PF01551 Peptidase family M23 ALFP_2037 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) ALFP_2038 PF01975 Survival protein SurE ALFP_2039 PF02660 ALFP_2039 ALFP_2040 PF00814 Glycoprotease family ALFP_2041 PF00860 Permease family ALFP_2042 PF00085 Thioredoxin ALFP_2043 PF09630 Domain of unknown function (DUF2024) ALFP_2044 PF08534 Redoxin ALFP_2045 PF01205 Uncharacterized protein family UPF0029 ALFP_2045 PF09186 Domain of unknown function (DUF1949) ALFP_2046 PF00005 ABC transporter ALFP_2046 PF12848 ABC transporter ALFP_2047 PF02016 LD-carboxypeptidase ALFP_2048 PF14437 ALFP_2048 ALFP_2049 PF00005 ABC transporter ALFP_2050 PF01061 ALFP_2050 ALFP_2051 PF00583 Acetyltransferase (GNAT) family ALFP_2052 PF04461 Protein of unknown function (DUF520) ALFP_2053 PF00501 AMP-binding enzyme ALFP_2053 PF13193 AMP-binding enzyme C-terminal domain ALFP_2054 PF02537 ALFP_2054 ALFP_2055 PF00117 Glutamine amidotransferase class-I ALFP_2056 PF02311 AraC-like ligand binding domain ALFP_2056 PF12833 Helix-turn-helix domain ALFP_2057 PF13593 SBF-like CPA transporter family (DUF4137) ALFP_2058 PF00578 AhpC/TSA family ALFP_2058 PF01790 ALFP_2058 ALFP_2059 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ALFP_2060 PF06808 ALFP_2060 ALFP_2061 PF04290 ALFP_2061 ALFP_2062 PF01416 tRNA pseudouridine synthase ALFP_2063 PF01476 LysM domain ALFP_2064 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALFP_2064 PF02774 Semialdehyde dehydrogenase, dimerisation domain ALFP_2065 PF00180 Isocitrate/isopropylmalate dehydrogenase ALFP_2066 PF00694 Aconitase C-terminal domain ALFP_2067 PF00330 Aconitase family (aconitate hydratase) ALFP_2068 PF00155 Aminotransferase class I and II ALFP_2068 PF00392 Bacterial regulatory proteins, gntR family ALFP_2069 PF02627 Carboxymuconolactone decarboxylase family ALFP_2070 PF03928 Domain of unknown function (DUF336) ALFP_2071 PF00072 Response regulator receiver domain ALFP_2071 PF00196 Bacterial regulatory proteins, luxR family ALFP_2072 PF00512 His Kinase A (phospho-acceptor) domain ALFP_2072 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2073 PF01435 Peptidase family M48 ALFP_2074 PF01264 Chorismate synthase ALFP_2075 PF02696 ALFP_2075 ALFP_2076 PF09842 ALFP_2076 ALFP_2077 PF03631 ALFP_2077 ALFP_2078 PF00571 CBS domain ALFP_2079 PF01207 Dihydrouridine synthase (Dus) ALFP_2080 PF01636 Phosphotransferase enzyme family ALFP_2083 PF00482 Type II secretion system (T2SS), protein F ALFP_2084 PF00482 Type II secretion system (T2SS), protein F ALFP_2085 PF00437 Type II/IV secretion system protein ALFP_2085 PF00498 FHA domain ALFP_2086 PF00263 ALFP_2086 ALFP_2086 PF13629 ALFP_2086 ALFP_2087 PF08666 SAF domain ALFP_2087 PF16976 ALFP_2087 ALFP_2092 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALFP_2093 PF00719 Inorganic pyrophosphatase ALFP_2094 PF07219 ALFP_2094 ALFP_2094 PF13181 Tetratricopeptide repeat ALFP_2095 PF04375 ALFP_2095 ALFP_2096 PF02602 Uroporphyrinogen-III synthase HemD ALFP_2097 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ALFP_2097 PF03900 Porphobilinogen deaminase, C-terminal domain ALFP_2099 PF03741 ALFP_2099 ALFP_2100 PF00549 CoA-ligase ALFP_2100 PF02629 CoA binding domain ALFP_2101 PF00549 CoA-ligase ALFP_2101 PF08442 ATP-grasp domain ALFP_2102 PF11136 ALFP_2102 ALFP_2103 PF01717 Cobalamin-independent synthase, Catalytic domain ALFP_2103 PF08267 Cobalamin-independent synthase, N-terminal domain ALFP_2104 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2104 PF03466 LysR substrate binding domain ALFP_2105 PF02631 RecX family ALFP_2106 PF00154 recA bacterial DNA recombination protein ALFP_2108 PF00072 Response regulator receiver domain ALFP_2108 PF00486 Transcriptional regulatory protein, C terminal ALFP_2109 PF00512 His Kinase A (phospho-acceptor) domain ALFP_2109 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2109 PF08521 ALFP_2109 ALFP_2110 PF00083 Sugar (and other) transporter ALFP_2111 PF04381 Putative exonuclease, RdgC ALFP_2112 PF12625 ALFP_2112 ALFP_2112 PF12833 Helix-turn-helix domain ALFP_2113 PF00501 AMP-binding enzyme ALFP_2113 PF13193 AMP-binding enzyme C-terminal domain ALFP_2114 PF00378 Enoyl-CoA hydratase/isomerase family ALFP_2115 PF04341 ALFP_2115 ALFP_2116 PF00474 Sodium:solute symporter family ALFP_2117 PF00171 Aldehyde dehydrogenase family ALFP_2118 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ALFP_2118 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ALFP_2121 PF00905 Penicillin binding protein transpeptidase domain ALFP_2121 PF00912 Transglycosylase ALFP_2121 PF06832 ALFP_2121 ALFP_2122 PF00207 Alpha-2-macroglobulin family ALFP_2122 PF01835 MG2 domain ALFP_2122 PF07703 Alpha-2-macroglobulin family N-terminal region ALFP_2122 PF11974 Alpha-2-macroglobulin MG1 domain ALFP_2124 PF03060 Nitronate monooxygenase ALFP_2125 PF04055 Radical SAM superfamily ALFP_2125 PF06969 HemN C-terminal domain ALFP_2126 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains ALFP_2126 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ALFP_2126 PF04039 ALFP_2126 ALFP_2126 PF13244 ALFP_2126 ALFP_2127 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ALFP_2128 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains ALFP_2129 PF01899 ALFP_2129 ALFP_2130 PF04066 ALFP_2130 ALFP_2131 PF03334 ALFP_2131 ALFP_2133 PF07690 Major Facilitator Superfamily ALFP_2134 PF12973 ChrR Cupin-like domain ALFP_2135 PF11953 Domain of unknown function (DUF3470) ALFP_2135 PF13187 4Fe-4S dicluster domain ALFP_2136 PF07883 Cupin domain ALFP_2136 PF13560 Helix-turn-helix domain ALFP_2137 PF01965 DJ-1/PfpI family ALFP_2138 PF02705 ALFP_2138 ALFP_2139 PF00512 His Kinase A (phospho-acceptor) domain ALFP_2139 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2140 PF00072 Response regulator receiver domain ALFP_2140 PF00486 Transcriptional regulatory protein, C terminal ALFP_2141 PF02472 Biopolymer transport protein ExbD/TolR ALFP_2142 PF01618 ALFP_2142 ALFP_2143 PF03544 Gram-negative bacterial TonB protein C-terminal ALFP_2144 PF00005 ABC transporter ALFP_2144 PF12857 ALFP_2144 ALFP_2145 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2146 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2147 PF13531 Bacterial extracellular solute-binding protein ALFP_2148 PF13649 Methyltransferase domain ALFP_2150 PF00313 'Cold-shock' DNA-binding domain ALFP_2151 PF00216 Bacterial DNA-binding protein ALFP_2153 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALFP_2154 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_2155 PF02239 Cytochrome D1 heme domain ALFP_2157 PF13404 AsnC-type helix-turn-helix domain ALFP_2159 PF04055 Radical SAM superfamily ALFP_2159 PF13353 4Fe-4S single cluster domain ALFP_2161 PF10414 Sirohaem synthase dimerisation region ALFP_2161 PF13241 Putative NAD(P)-binding ALFP_2161 PF14824 Sirohaem biosynthesis protein central ALFP_2162 PF00034 Cytochrome c ALFP_2163 PF02239 Cytochrome D1 heme domain ALFP_2163 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_2164 PF00155 Aminotransferase class I and II ALFP_2165 PF01053 Cys/Met metabolism PLP-dependent enzyme ALFP_2166 PF00588 SpoU rRNA Methylase family ALFP_2166 PF08032 RNA 2'-O ribose methyltransferase substrate binding ALFP_2167 PF00575 S1 RNA binding domain ALFP_2167 PF00773 RNB domain ALFP_2167 PF08206 Ribonuclease B OB domain ALFP_2168 PF00403 Heavy-metal-associated domain ALFP_2169 PF00356 Bacterial regulatory proteins, lacI family ALFP_2169 PF13407 Periplasmic binding protein domain ALFP_2170 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2171 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2172 PF00005 ABC transporter ALFP_2173 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_2174 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_2175 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain ALFP_2175 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain ALFP_2176 PF07005 Protein of unknown function, DUF1537 ALFP_2176 PF17042 ALFP_2176 ALFP_2178 PF04954 Siderophore-interacting protein ALFP_2178 PF08021 Siderophore-interacting FAD-binding domain ALFP_2179 PF03551 Transcriptional regulator PadR-like family ALFP_2181 PF00890 FAD binding domain ALFP_2181 PF04820 Tryptophan halogenase ALFP_2182 PF01478 Type IV leader peptidase family ALFP_2183 PF13598 ALFP_2183 ALFP_2184 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2184 PF03466 LysR substrate binding domain ALFP_2185 PF00005 ABC transporter ALFP_2186 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2187 PF13419 Haloacid dehalogenase-like hydrolase ALFP_2188 PF13343 Bacterial extracellular solute-binding protein ALFP_2189 PF01266 FAD dependent oxidoreductase ALFP_2190 PF13420 Acetyltransferase (GNAT) domain ALFP_2192 PF01738 Dienelactone hydrolase family ALFP_2193 PF12843 ALFP_2193 ALFP_2194 PF02798 Glutathione S-transferase, N-terminal domain ALFP_2194 PF14497 Glutathione S-transferase, C-terminal domain ALFP_2195 PF02678 Pirin ALFP_2195 PF05726 Pirin C-terminal cupin domain ALFP_2196 PF13532 2OG-Fe(II) oxygenase superfamily ALFP_2197 PF00795 Carbon-nitrogen hydrolase ALFP_2198 PF07690 Major Facilitator Superfamily ALFP_2199 PF07690 Major Facilitator Superfamily ALFP_2200 PF02311 AraC-like ligand binding domain ALFP_2200 PF12833 Helix-turn-helix domain ALFP_2201 PF03594 ALFP_2201 ALFP_2202 PF11450 ALFP_2202 ALFP_2203 PF03746 LamB/YcsF family ALFP_2204 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2204 PF03466 LysR substrate binding domain ALFP_2205 PF00941 FAD binding domain in molybdopterin dehydrogenase ALFP_2205 PF01799 [2Fe-2S] binding domain ALFP_2205 PF03450 CO dehydrogenase flavoprotein C-terminal domain ALFP_2206 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_2206 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALFP_2207 PF02625 XdhC and CoxI family ALFP_2207 PF13478 XdhC Rossmann domain ALFP_2208 PF01979 Amidohydrolase family ALFP_2209 PF04191 Phospholipid methyltransferase ALFP_2210 PF00072 Response regulator receiver domain ALFP_2210 PF00486 Transcriptional regulatory protein, C terminal ALFP_2211 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2212 PF00140 Sigma-70 factor, region 1 ALFP_2212 PF03979 Sigma-70 factor, region 1 ALFP_2212 PF04539 Sigma-70 region 3 ALFP_2212 PF04542 Sigma-70 region 2 ALFP_2212 PF04545 Sigma-70, region 4 ALFP_2212 PF04546 Sigma-70, non-essential region ALFP_2213 PF08275 DNA primase catalytic core, N-terminal domain ALFP_2213 PF08278 DNA primase DnaG DnaB-binding ALFP_2213 PF10410 DnaB-helicase binding domain of primase ALFP_2213 PF13662 Toprim domain ALFP_2214 PF01165 Ribosomal protein S21 ALFP_2215 PF00156 Phosphoribosyl transferase domain ALFP_2216 PF00709 Adenylosuccinate synthetase ALFP_2217 PF13393 Histidyl-tRNA synthetase ALFP_2218 PF01145 SPFH domain / Band 7 family ALFP_2219 PF01145 SPFH domain / Band 7 family ALFP_2219 PF12221 ALFP_2219 ALFP_2220 PF01926 50S ribosome-binding GTPase ALFP_2220 PF13167 ALFP_2220 ALFP_2220 PF16360 ALFP_2220 ALFP_2221 PF17209 ALFP_2221 ALFP_2222 PF00155 Aminotransferase class I and II ALFP_2223 PF01926 50S ribosome-binding GTPase ALFP_2223 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ALFP_2224 PF13360 PQQ-like domain ALFP_2225 PF09976 Tetratricopeptide repeat ALFP_2226 PF03129 Anticodon binding domain ALFP_2226 PF13393 Histidyl-tRNA synthetase ALFP_2227 PF04551 GcpE protein ALFP_2228 PF13413 Helix-turn-helix domain ALFP_2229 PF04055 Radical SAM superfamily ALFP_2230 PF00334 Nucleoside diphosphate kinase ALFP_2231 PF00133 tRNA synthetases class I (I, L, M and V) ALFP_2231 PF08264 Anticodon-binding domain of tRNA ALFP_2231 PF10458 Valyl tRNA synthetase tRNA binding arm ALFP_2232 PF01746 tRNA (Guanine-1)-methyltransferase ALFP_2233 PF01782 RimM N-terminal domain ALFP_2234 PF00886 Ribosomal protein S16 ALFP_2235 PF01206 Sulfurtransferase TusA ALFP_2236 PF01411 tRNA synthetases class II (A) ALFP_2236 PF02272 DHHA1 domain ALFP_2236 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALFP_2237 PF01522 Polysaccharide deacetylase ALFP_2238 PF00392 Bacterial regulatory proteins, gntR family ALFP_2238 PF07729 FCD domain ALFP_2239 PF00576 HIUase/Transthyretin family ALFP_2240 PF00034 Cytochrome c ALFP_2240 PF06181 ALFP_2240 ALFP_2245 PF03524 Conjugal transfer protein ALFP_2245 PF10671 Toxin co-regulated pilus biosynthesis protein Q ALFP_2246 PF13416 Bacterial extracellular solute-binding protein ALFP_2247 PF01266 FAD dependent oxidoreductase ALFP_2248 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_2248 PF00175 Oxidoreductase NAD-binding domain ALFP_2248 PF00970 Oxidoreductase FAD-binding domain ALFP_2249 PF00521 DNA gyrase/topoisomerase IV, subunit A ALFP_2249 PF03989 DNA gyrase C-terminal domain, beta-propeller ALFP_2250 PF00204 DNA gyrase B ALFP_2250 PF00986 DNA gyrase B subunit, carboxyl terminus ALFP_2250 PF01751 Toprim domain ALFP_2250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2251 PF00085 Thioredoxin ALFP_2252 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALFP_2252 PF07497 Rho termination factor, RNA-binding domain ALFP_2252 PF07498 Rho termination factor, N-terminal domain ALFP_2253 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALFP_2253 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ALFP_2254 PF01613 Flavin reductase like domain ALFP_2255 PF00866 Ring hydroxylating beta subunit ALFP_2256 PF00355 Rieske [2Fe-2S] domain ALFP_2256 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_2257 PF00005 ABC transporter ALFP_2257 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALFP_2258 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2258 PF12911 ALFP_2258 ALFP_2259 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALFP_2261 PF02830 V4R domain ALFP_2262 PF00392 Bacterial regulatory proteins, gntR family ALFP_2262 PF07729 FCD domain ALFP_2263 PF13354 Beta-lactamase enzyme family ALFP_2264 PF05170 ALFP_2264 ALFP_2264 PF13116 ALFP_2264 ALFP_2264 PF13502 ALFP_2264 ALFP_2265 PF03710 Glutamate-ammonia ligase adenylyltransferase ALFP_2265 PF08335 GlnD PII-uridylyltransferase ALFP_2266 PF02677 ALFP_2266 ALFP_2267 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_2267 PF02861 Clp amino terminal domain ALFP_2267 PF07724 AAA domain (Cdc48 subfamily) ALFP_2267 PF10431 C-terminal, D2-small domain, of ClpB protein ALFP_2268 PF00027 Cyclic nucleotide-binding domain ALFP_2268 PF13545 Crp-like helix-turn-helix domain ALFP_2270 PF05751 ALFP_2270 ALFP_2271 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ALFP_2271 PF12801 ALFP_2271 ALFP_2271 PF13746 4Fe-4S dicluster domain ALFP_2272 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_2272 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ALFP_2273 PF05545 ALFP_2273 ALFP_2274 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO ALFP_2275 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_2276 PF03597 ALFP_2276 ALFP_2277 PF00122 E1-E2 ATPase ALFP_2279 PF00463 Isocitrate lyase family ALFP_2280 PF14489 QueF-like protein ALFP_2280 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ALFP_2281 PF07690 Major Facilitator Superfamily ALFP_2282 PF01066 CDP-alcohol phosphatidyltransferase ALFP_2283 PF01541 GIY-YIG catalytic domain ALFP_2283 PF02151 UvrB/uvrC motif ALFP_2283 PF08459 UvrC Helix-hairpin-helix N-terminal ALFP_2283 PF14520 Helix-hairpin-helix domain ALFP_2284 PF00933 Glycosyl hydrolase family 3 N terminal domain ALFP_2285 PF01648 4'-phosphopantetheinyl transferase superfamily ALFP_2286 PF00501 AMP-binding enzyme ALFP_2286 PF14535 AMP-binding enzyme C-terminal domain ALFP_2287 PF03061 Thioesterase superfamily ALFP_2288 PF00378 Enoyl-CoA hydratase/isomerase family ALFP_2289 PF00171 Aldehyde dehydrogenase family ALFP_2290 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_2290 PF00175 Oxidoreductase NAD-binding domain ALFP_2290 PF00970 Oxidoreductase FAD-binding domain ALFP_2291 PF01883 Domain of unknown function DUF59 ALFP_2292 PF05138 Phenylacetic acid catabolic protein ALFP_2293 PF06243 Phenylacetic acid degradation B ALFP_2294 PF05138 Phenylacetic acid catabolic protein ALFP_2296 PF00929 Exonuclease ALFP_2297 PF01435 Peptidase family M48 ALFP_2297 PF16491 ALFP_2297 ALFP_2298 PF03193 Protein of unknown function, DUF258 ALFP_2299 PF00293 NUDIX domain ALFP_2300 PF01245 Ribosomal protein L19 ALFP_2301 PF10437 Bacterial lipoate protein ligase C-terminus ALFP_2302 PF03099 Biotin/lipoate A/B protein ligase family ALFP_2304 PF00578 AhpC/TSA family ALFP_2304 PF10417 C-terminal domain of 1-Cys peroxiredoxin ALFP_2305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_2305 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_2305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_2305 PF12418 ALFP_2305 ALFP_2305 PF12806 ALFP_2305 ALFP_2306 PF00766 Electron transfer flavoprotein FAD-binding domain ALFP_2306 PF01012 Electron transfer flavoprotein domain ALFP_2307 PF01012 Electron transfer flavoprotein domain ALFP_2308 PF00850 Histone deacetylase domain ALFP_2310 PF13406 Transglycosylase SLT domain ALFP_2311 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_2312 PF12836 Helix-hairpin-helix motif ALFP_2313 PF01370 NAD dependent epimerase/dehydratase family ALFP_2314 PF00294 pfkB family carbohydrate kinase ALFP_2316 PF06305 ALFP_2316 ALFP_2317 PF00216 Bacterial DNA-binding protein ALFP_2318 PF00575 S1 RNA binding domain ALFP_2319 PF02224 Cytidylate kinase ALFP_2320 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALFP_2321 PF02153 Prephenate dehydrogenase ALFP_2322 PF00800 Prephenate dehydratase ALFP_2322 PF01817 Chorismate mutase type II ALFP_2322 PF01842 ACT domain ALFP_2323 PF00266 Aminotransferase class-V ALFP_2324 PF00521 DNA gyrase/topoisomerase IV, subunit A ALFP_2324 PF03989 DNA gyrase C-terminal domain, beta-propeller ALFP_2325 PF00691 OmpA family ALFP_2326 PF13489 Methyltransferase domain ALFP_2327 PF13419 Haloacid dehalogenase-like hydrolase ALFP_2328 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2328 PF03466 LysR substrate binding domain ALFP_2329 PF07690 Major Facilitator Superfamily ALFP_2330 PF00037 4Fe-4S binding domain ALFP_2330 PF11953 Domain of unknown function (DUF3470) ALFP_2331 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family ALFP_2332 PF00593 TonB dependent receptor ALFP_2332 PF07715 TonB-dependent Receptor Plug Domain ALFP_2335 PF00199 Catalase ALFP_2335 PF06628 Catalase-related immune-responsive ALFP_2336 PF00149 Calcineurin-like phosphoesterase ALFP_2337 PF13646 HEAT repeats ALFP_2338 PF01047 MarR family ALFP_2340 PF00155 Aminotransferase class I and II ALFP_2341 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2341 PF03466 LysR substrate binding domain ALFP_2342 PF01042 Endoribonuclease L-PSP ALFP_2343 PF00440 Bacterial regulatory proteins, tetR family ALFP_2344 PF01575 MaoC like domain ALFP_2345 PF00583 Acetyltransferase (GNAT) family ALFP_2346 PF01042 Endoribonuclease L-PSP ALFP_2347 PF01810 ALFP_2347 ALFP_2348 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2348 PF03466 LysR substrate binding domain ALFP_2349 PF00155 Aminotransferase class I and II ALFP_2349 PF00392 Bacterial regulatory proteins, gntR family ALFP_2350 PF04299 Putative FMN-binding domain ALFP_2351 PF02082 Transcriptional regulator ALFP_2352 PF13649 Methyltransferase domain ALFP_2353 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_2354 PF02798 Glutathione S-transferase, N-terminal domain ALFP_2354 PF14497 Glutathione S-transferase, C-terminal domain ALFP_2359 PF02661 Fic/DOC family ALFP_2361 PF00271 Helicase conserved C-terminal domain ALFP_2361 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ALFP_2361 PF04851 Type III restriction enzyme, res subunit ALFP_2361 PF08463 ALFP_2361 ALFP_2361 PF13643 ALFP_2361 ALFP_2362 PF03235 ALFP_2362 ALFP_2363 PF01420 Type I restriction modification DNA specificity domain ALFP_2364 PF02384 N-6 DNA Methylase ALFP_2364 PF12161 HsdM N-terminal domain ALFP_2366 PF00665 Integrase core domain ALFP_2366 PF08722 TnsA endonuclease N terminal ALFP_2366 PF09299 Mu transposase, C-terminal ALFP_2367 PF13401 AAA domain ALFP_2369 PF00375 Sodium:dicarboxylate symporter family ALFP_2370 PF01810 ALFP_2370 ALFP_2371 PF05014 Nucleoside 2-deoxyribosyltransferase ALFP_2372 PF01380 SIS domain ALFP_2374 PF04341 ALFP_2374 ALFP_2375 PF00474 Sodium:solute symporter family ALFP_2376 PF00072 Response regulator receiver domain ALFP_2376 PF00196 Bacterial regulatory proteins, luxR family ALFP_2377 PF00072 Response regulator receiver domain ALFP_2377 PF00512 His Kinase A (phospho-acceptor) domain ALFP_2377 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2377 PF12860 ALFP_2377 ALFP_2380 PF01747 ATP-sulfurylase ALFP_2380 PF14306 PUA-like domain ALFP_2381 PF01564 Spermine/spermidine synthase ALFP_2381 PF02675 S-adenosylmethionine decarboxylase ALFP_2382 PF00512 His Kinase A (phospho-acceptor) domain ALFP_2382 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2383 PF00072 Response regulator receiver domain ALFP_2383 PF12728 Helix-turn-helix domain ALFP_2384 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_2384 PF08447 PAS fold ALFP_2385 PF01169 ALFP_2385 ALFP_2386 PF13231 ALFP_2386 ALFP_2387 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2387 PF03466 LysR substrate binding domain ALFP_2388 PF02525 Flavodoxin-like fold ALFP_2389 PF00925 GTP cyclohydrolase II ALFP_2391 PF01292 Prokaryotic cytochrome b561 ALFP_2392 PF03109 ALFP_2392 ALFP_2393 PF04228 ALFP_2393 ALFP_2394 PF07690 Major Facilitator Superfamily ALFP_2395 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ALFP_2396 PF12802 MarR family ALFP_2399 PF00543 Nitrogen regulatory protein P-II ALFP_2400 PF00909 Ammonium Transporter Family ALFP_2401 PF01322 Cytochrome C' ALFP_2402 PF00206 Lyase ALFP_2402 PF08328 Adenylosuccinate lyase C-terminal ALFP_2403 PF13410 Glutathione S-transferase, C-terminal domain ALFP_2403 PF13417 Glutathione S-transferase, N-terminal domain ALFP_2404 PF12833 Helix-turn-helix domain ALFP_2405 PF07859 alpha/beta hydrolase fold ALFP_2406 PF01925 ALFP_2406 ALFP_2407 PF03054 tRNA methyl transferase ALFP_2408 PF01565 FAD binding domain ALFP_2408 PF02913 FAD linked oxidases, C-terminal domain ALFP_2409 PF00793 DAHP synthetase I family ALFP_2410 PF04328 ALFP_2410 ALFP_2411 PF02554 ALFP_2411 ALFP_2411 PF13722 ALFP_2411 ALFP_2412 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_2413 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2414 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2415 PF00005 ABC transporter ALFP_2416 PF00205 Thiamine pyrophosphate enzyme, central domain ALFP_2416 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALFP_2416 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALFP_2417 PF00171 Aldehyde dehydrogenase family ALFP_2418 PF01958 Domain of unknown function DUF108 ALFP_2418 PF03447 Homoserine dehydrogenase, NAD binding domain ALFP_2419 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_2420 PF12697 Alpha/beta hydrolase family ALFP_2421 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2422 PF00005 ABC transporter ALFP_2423 PF09084 NMT1/THI5 like ALFP_2424 PF07883 Cupin domain ALFP_2425 PF13609 Gram-negative porin ALFP_2426 PF01614 Bacterial transcriptional regulator ALFP_2426 PF09339 IclR helix-turn-helix domain ALFP_2427 PF09998 ALFP_2427 ALFP_2428 PF05721 Phytanoyl-CoA dioxygenase (PhyH) ALFP_2429 PF06339 ALFP_2429 ALFP_2430 PF00202 Aminotransferase class-III ALFP_2431 PF00583 Acetyltransferase (GNAT) family ALFP_2432 PF01047 MarR family ALFP_2433 PF00892 EamA-like transporter family ALFP_2434 PF01523 Putative modulator of DNA gyrase ALFP_2435 PF00816 H-NS histone family ALFP_2436 PF13590 Domain of unknown function (DUF4136) ALFP_2437 PF01433 Peptidase family M1 ALFP_2437 PF11940 Domain of unknown function (DUF3458) ALFP_2437 PF17432 ALFP_2437 ALFP_2438 PF00316 Fructose-1-6-bisphosphatase ALFP_2439 PF00107 Zinc-binding dehydrogenase ALFP_2439 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_2440 PF00892 EamA-like transporter family ALFP_2441 PF00180 Isocitrate/isopropylmalate dehydrogenase ALFP_2442 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_2443 PF05872 ALFP_2443 ALFP_2444 PF01709 Transcriptional regulator ALFP_2445 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ALFP_2445 PF02843 Phosphoribosylglycinamide synthetase, C domain ALFP_2445 PF02844 Phosphoribosylglycinamide synthetase, N domain ALFP_2446 PF01218 Coproporphyrinogen III oxidase ALFP_2447 PF01467 Cytidylyltransferase ALFP_2448 PF02410 Oligomerisation domain ALFP_2449 PF02590 Predicted SPOUT methyltransferase ALFP_2450 PF02545 Maf-like protein ALFP_2451 PF13098 Thioredoxin-like domain ALFP_2453 PF06629 ALFP_2453 ALFP_2454 PF01253 Translation initiation factor SUI1 ALFP_2455 PF06097 ALFP_2455 ALFP_2456 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALFP_2456 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALFP_2457 PF02798 Glutathione S-transferase, N-terminal domain ALFP_2458 PF02401 LytB protein ALFP_2459 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALFP_2460 PF04002 RadC-like JAB domain ALFP_2461 PF01380 SIS domain ALFP_2461 PF01418 Helix-turn-helix domain, rpiR family ALFP_2462 PF00083 Sugar (and other) transporter ALFP_2464 PF07690 Major Facilitator Superfamily ALFP_2465 PF01197 Ribosomal protein L31 ALFP_2467 PF01554 MatE ALFP_2468 PF00005 ABC transporter ALFP_2469 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2470 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ALFP_2471 PF02353 Mycolic acid cyclopropane synthetase ALFP_2473 PF07690 Major Facilitator Superfamily ALFP_2474 PF00830 Ribosomal L28 family ALFP_2475 PF00471 Ribosomal protein L33 ALFP_2476 PF00133 tRNA synthetases class I (I, L, M and V) ALFP_2476 PF08264 Anticodon-binding domain of tRNA ALFP_2476 PF09334 tRNA synthetases class I (M) ALFP_2476 PF13603 Leucyl-tRNA synthetase, Domain 2 ALFP_2477 PF04390 Lipopolysaccharide-assembly ALFP_2478 PF06144 DNA polymerase III, delta subunit ALFP_2479 PF00171 Aldehyde dehydrogenase family ALFP_2480 PF03653 ALFP_2480 ALFP_2481 PF01170 Putative RNA methylase family UPF0020 ALFP_2481 PF02926 THUMP domain ALFP_2483 PF06271 ALFP_2483 ALFP_2484 PF01430 Hsp33 protein ALFP_2486 PF04977 Septum formation initiator ALFP_2487 PF00113 Enolase, C-terminal TIM barrel domain ALFP_2487 PF03952 Enolase, N-terminal domain ALFP_2488 PF12802 MarR family ALFP_2489 PF07690 Major Facilitator Superfamily ALFP_2490 PF00106 short chain dehydrogenase ALFP_2491 PF07045 Protein of unknown function (DUF1330) ALFP_2492 PF00793 DAHP synthetase I family ALFP_2493 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_2494 PF00117 Glutamine amidotransferase class-I ALFP_2494 PF06418 CTP synthase N-terminus ALFP_2495 PF00557 Metallopeptidase family M24 ALFP_2495 PF01321 Creatinase/Prolidase N-terminal domain ALFP_2495 PF16188 ALFP_2495 ALFP_2495 PF16189 ALFP_2495 ALFP_2496 PF01144 Coenzyme A transferase ALFP_2497 PF01144 Coenzyme A transferase ALFP_2498 PF13279 Thioesterase-like superfamily ALFP_2499 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase ALFP_2499 PF13450 NAD(P)-binding Rossmann-like domain ALFP_2500 PF00892 EamA-like transporter family ALFP_2501 PF00501 AMP-binding enzyme ALFP_2501 PF13193 AMP-binding enzyme C-terminal domain ALFP_2501 PF16177 ALFP_2501 ALFP_2502 PF11700 ALFP_2502 ALFP_2504 PF00877 NlpC/P60 family ALFP_2505 PF10087 ALFP_2505 ALFP_2506 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2506 PF03466 LysR substrate binding domain ALFP_2507 PF00171 Aldehyde dehydrogenase family ALFP_2508 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2508 PF03466 LysR substrate binding domain ALFP_2509 PF03739 ALFP_2509 ALFP_2510 PF00883 Cytosol aminopeptidase family, catalytic domain ALFP_2510 PF02789 Cytosol aminopeptidase family, N-terminal domain ALFP_2511 PF04364 DNA polymerase III chi subunit, HolC ALFP_2512 PF01027 Inhibitor of apoptosis-promoting Bax1 ALFP_2513 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_2513 PF06426 Serine acetyltransferase, N-terminal ALFP_2515 PF13470 ALFP_2515 ALFP_2516 PF02565 Recombination protein O C terminal ALFP_2516 PF11967 Recombination protein O N terminal ALFP_2517 PF01926 50S ribosome-binding GTPase ALFP_2517 PF07650 KH domain ALFP_2518 PF00035 Double-stranded RNA binding motif ALFP_2518 PF14622 Ribonuclease-III-like ALFP_2519 PF00717 Peptidase S24-like ALFP_2519 PF10502 Signal peptidase, peptidase S26 ALFP_2520 PF00009 Elongation factor Tu GTP binding domain ALFP_2520 PF00679 Elongation factor G C-terminus ALFP_2520 PF03144 Elongation factor Tu domain 2 ALFP_2520 PF06421 GTP-binding protein LepA C-terminus ALFP_2521 PF13180 PDZ domain ALFP_2521 PF13365 Trypsin-like peptidase domain ALFP_2522 PF03888 MucB/RseB family ALFP_2522 PF17188 ALFP_2522 ALFP_2523 PF03872 Anti sigma-E protein RseA, N-terminal domain ALFP_2524 PF04542 Sigma-70 region 2 ALFP_2524 PF08281 Sigma-70, region 4 ALFP_2526 PF00109 Beta-ketoacyl synthase, N-terminal domain ALFP_2526 PF02801 Beta-ketoacyl synthase, C-terminal domain ALFP_2527 PF00550 Phosphopantetheine attachment site ALFP_2528 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_2529 PF00698 Acyl transferase domain ALFP_2530 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ALFP_2530 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ALFP_2531 PF02504 Fatty acid synthesis protein ALFP_2532 PF01783 Ribosomal L32p protein family ALFP_2533 PF02620 ALFP_2533 ALFP_2534 PF02545 Maf-like protein ALFP_2536 PF01471 Putative peptidoglycan binding domain ALFP_2536 PF01510 N-acetylmuramoyl-L-alanine amidase ALFP_2537 PF01794 ALFP_2537 ALFP_2538 PF00174 Oxidoreductase molybdopterin binding domain ALFP_2539 PF13419 Haloacid dehalogenase-like hydrolase ALFP_2540 PF00849 RNA pseudouridylate synthase ALFP_2540 PF01479 S4 domain ALFP_2541 PF00575 S1 RNA binding domain ALFP_2541 PF10150 Ribonuclease E/G family ALFP_2542 PF01039 Carboxyl transferase domain ALFP_2543 PF00290 Tryptophan synthase alpha chain ALFP_2544 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_2545 PF02824 TGS domain ALFP_2545 PF04607 Region found in RelA / SpoT proteins ALFP_2545 PF13291 ACT domain ALFP_2545 PF13328 HD domain ALFP_2546 PF03358 NADPH-dependent FMN reductase ALFP_2547 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ALFP_2548 PF00037 4Fe-4S binding domain ALFP_2548 PF11953 Domain of unknown function (DUF3470) ALFP_2549 PF06850 ALFP_2549 ALFP_2550 PF04060 Putative Fe-S cluster ALFP_2550 PF14697 4Fe-4S dicluster domain ALFP_2551 PF00633 Helix-hairpin-helix motif ALFP_2551 PF00730 HhH-GPD superfamily base excision DNA repair protein ALFP_2551 PF10576 Iron-sulfur binding domain of endonuclease III ALFP_2552 PF00005 ABC transporter ALFP_2553 PF03922 OmpW family ALFP_2554 PF00005 ABC transporter ALFP_2555 PF00005 ABC transporter ALFP_2555 PF02653 ALFP_2555 ALFP_2555 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_2556 PF02653 ALFP_2556 ALFP_2557 PF13458 Periplasmic binding protein ALFP_2559 PF01641 SelR domain ALFP_2560 PF04279 ALFP_2560 ALFP_2561 PF01722 BolA-like protein ALFP_2562 PF00639 PPIC-type PPIASE domain ALFP_2563 PF00533 BRCA1 C Terminus (BRCT) domain ALFP_2563 PF01653 NAD-dependent DNA ligase adenylation domain ALFP_2563 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ALFP_2563 PF03120 NAD-dependent DNA ligase OB-fold domain ALFP_2563 PF12826 Helix-hairpin-helix motif ALFP_2563 PF14520 Helix-hairpin-helix domain ALFP_2564 PF04354 ZipA, C-terminal FtsZ-binding domain ALFP_2565 PF02463 RecF/RecN/SMC N terminal domain ALFP_2565 PF06470 SMC proteins Flexible Hinge Domain ALFP_2566 PF07690 Major Facilitator Superfamily ALFP_2567 PF03167 Uracil DNA glycosylase superfamily ALFP_2568 PF00583 Acetyltransferase (GNAT) family ALFP_2568 PF00814 Glycoprotease family ALFP_2569 PF00072 Response regulator receiver domain ALFP_2569 PF00486 Transcriptional regulatory protein, C terminal ALFP_2570 PF00512 His Kinase A (phospho-acceptor) domain ALFP_2570 PF00672 HAMP domain ALFP_2570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2570 PF16524 ALFP_2570 ALFP_2571 PF02542 YgbB family ALFP_2572 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ALFP_2573 PF00270 DEAD/DEAH box helicase ALFP_2573 PF00271 Helicase conserved C-terminal domain ALFP_2573 PF02559 CarD-like/TRCF domain ALFP_2573 PF03461 TRCF domain ALFP_2574 PF12710 haloacid dehalogenase-like hydrolase ALFP_2574 PF13284 ALFP_2574 ALFP_2575 PF03060 Nitronate monooxygenase ALFP_2576 PF10993 ALFP_2576 ALFP_2577 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains ALFP_2578 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains ALFP_2578 PF01059 ALFP_2578 ALFP_2579 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains ALFP_2579 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ALFP_2580 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ALFP_2581 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ALFP_2582 PF12838 4Fe-4S dicluster domain ALFP_2583 PF00146 NADH dehydrogenase ALFP_2584 PF00384 Molybdopterin oxidoreductase ALFP_2584 PF01568 Molydopterin dinucleotide binding domain ALFP_2584 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ALFP_2584 PF13510 2Fe-2S iron-sulfur cluster binding domain ALFP_2585 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ALFP_2585 PF10531 SLBB domain ALFP_2585 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ALFP_2586 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin ALFP_2587 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ALFP_2588 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ALFP_2589 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ALFP_2590 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ALFP_2592 PF13609 Gram-negative porin ALFP_2593 PF03840 Preprotein translocase SecG subunit ALFP_2594 PF00121 Triosephosphate isomerase ALFP_2595 PF00107 Zinc-binding dehydrogenase ALFP_2595 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_2596 PF07969 Amidohydrolase family ALFP_2597 PF00013 KH domain ALFP_2597 PF00575 S1 RNA binding domain ALFP_2597 PF01138 3' exoribonuclease family, domain 1 ALFP_2597 PF03725 3' exoribonuclease family, domain 2 ALFP_2597 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ALFP_2598 PF00312 Ribosomal protein S15 ALFP_2599 PF01066 CDP-alcohol phosphatidyltransferase ALFP_2600 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ALFP_2600 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain ALFP_2601 PF10369 Small subunit of acetolactate synthase ALFP_2601 PF13710 ACT domain ALFP_2602 PF00205 Thiamine pyrophosphate enzyme, central domain ALFP_2602 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALFP_2602 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALFP_2603 PF12805 ALFP_2603 ALFP_2603 PF13515 ALFP_2603 ALFP_2604 PF03883 ALFP_2604 ALFP_2605 PF00106 short chain dehydrogenase ALFP_2609 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALFP_2609 PF02403 Seryl-tRNA synthetase N-terminal domain ALFP_2610 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_2610 PF12002 MgsA AAA+ ATPase C terminal ALFP_2610 PF16193 ALFP_2610 ALFP_2611 PF03548 Outer membrane lipoprotein carrier protein LolA ALFP_2612 PF01580 FtsK/SpoIIIE family ALFP_2612 PF09397 Ftsk gamma domain ALFP_2612 PF13491 ALFP_2612 ALFP_2613 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_2614 PF01713 Smr domain ALFP_2615 PF14559 Tetratricopeptide repeat ALFP_2617 PF07690 Major Facilitator Superfamily ALFP_2618 PF01613 Flavin reductase like domain ALFP_2619 PF07876 Stress responsive A/B Barrel Domain ALFP_2620 PF07848 PaaX-like protein ALFP_2620 PF08223 PaaX-like protein C-terminal domain ALFP_2621 PF00135 Carboxylesterase family ALFP_2622 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ALFP_2623 PF00180 Isocitrate/isopropylmalate dehydrogenase ALFP_2624 PF08897 ALFP_2624 ALFP_2625 PF00034 Cytochrome c ALFP_2627 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_2628 PF13302 Acetyltransferase (GNAT) domain ALFP_2629 PF05762 VWA domain containing CoxE-like protein ALFP_2630 PF11180 ALFP_2630 ALFP_2631 PF00158 Sigma-54 interaction domain ALFP_2631 PF02954 Bacterial regulatory protein, Fis family ALFP_2632 PF13400 ALFP_2632 ALFP_2633 PF12266 ALFP_2633 ALFP_2634 PF14559 Tetratricopeptide repeat ALFP_2635 PF00482 Type II secretion system (T2SS), protein F ALFP_2636 PF00482 Type II secretion system (T2SS), protein F ALFP_2637 PF00437 Type II/IV secretion system protein ALFP_2639 PF00263 ALFP_2639 ALFP_2639 PF13629 ALFP_2639 ALFP_2640 PF08666 SAF domain ALFP_2640 PF16976 ALFP_2640 ALFP_2641 PF07811 ALFP_2641 ALFP_2643 PF01478 Type IV leader peptidase family ALFP_2644 PF04964 ALFP_2644 ALFP_2645 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ALFP_2645 PF08479 POTRA domain, ShlB-type ALFP_2646 PF15984 ALFP_2646 ALFP_2647 PF01047 MarR family ALFP_2648 PF15984 ALFP_2648 ALFP_2651 PF12802 MarR family ALFP_2652 PF00675 Insulinase (Peptidase family M16) ALFP_2652 PF05193 Peptidase M16 inactive domain ALFP_2653 PF00226 DnaJ domain ALFP_2653 PF00684 DnaJ central domain ALFP_2653 PF01556 DnaJ C terminal domain ALFP_2654 PF00012 Hsp70 protein ALFP_2655 PF01025 GrpE ALFP_2656 PF00762 Ferrochelatase ALFP_2657 PF01628 HrcA protein C terminal domain ALFP_2657 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ALFP_2658 PF01513 ATP-NAD kinase ALFP_2659 PF02463 RecF/RecN/SMC N terminal domain ALFP_2660 PF01475 Ferric uptake regulator family ALFP_2661 PF04355 SmpA / OmlA family ALFP_2662 PF01113 Dihydrodipicolinate reductase, N-terminus ALFP_2662 PF05173 Dihydrodipicolinate reductase, C-terminus ALFP_2664 PF00392 Bacterial regulatory proteins, gntR family ALFP_2664 PF07729 FCD domain ALFP_2665 PF12697 Alpha/beta hydrolase family ALFP_2666 PF00465 Iron-containing alcohol dehydrogenase ALFP_2667 PF07690 Major Facilitator Superfamily ALFP_2669 PF00392 Bacterial regulatory proteins, gntR family ALFP_2669 PF07729 FCD domain ALFP_2670 PF01565 FAD binding domain ALFP_2670 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ALFP_2671 PF00732 GMC oxidoreductase ALFP_2671 PF05199 GMC oxidoreductase ALFP_2672 PF12833 Helix-turn-helix domain ALFP_2672 PF14525 ALFP_2672 ALFP_2674 PF02321 Outer membrane efflux protein ALFP_2675 PF16576 ALFP_2675 ALFP_2676 PF07690 Major Facilitator Superfamily ALFP_2677 PF00440 Bacterial regulatory proteins, tetR family ALFP_2678 PF05163 DinB family ALFP_2679 PF00593 TonB dependent receptor ALFP_2679 PF07715 TonB-dependent Receptor Plug Domain ALFP_2680 PF07690 Major Facilitator Superfamily ALFP_2681 PF12833 Helix-turn-helix domain ALFP_2683 PF00756 Putative esterase ALFP_2684 PF13687 ALFP_2684 ALFP_2685 PF08808 ALFP_2685 ALFP_2687 PF00465 Iron-containing alcohol dehydrogenase ALFP_2688 PF00005 ABC transporter ALFP_2689 PF00005 ABC transporter ALFP_2690 PF02653 ALFP_2690 ALFP_2691 PF02653 ALFP_2691 ALFP_2692 PF13458 Periplasmic binding protein ALFP_2693 PF00171 Aldehyde dehydrogenase family ALFP_2694 PF01614 Bacterial transcriptional regulator ALFP_2694 PF09339 IclR helix-turn-helix domain ALFP_2695 PF00270 DEAD/DEAH box helicase ALFP_2695 PF00271 Helicase conserved C-terminal domain ALFP_2695 PF03880 DbpA RNA binding domain ALFP_2696 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2696 PF03466 LysR substrate binding domain ALFP_2697 PF00355 Rieske [2Fe-2S] domain ALFP_2697 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_2698 PF00866 Ring hydroxylating beta subunit ALFP_2699 PF00355 Rieske [2Fe-2S] domain ALFP_2700 PF00106 short chain dehydrogenase ALFP_2701 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_2701 PF14759 Reductase C-terminal ALFP_2702 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ALFP_2703 PF12697 Alpha/beta hydrolase family ALFP_2704 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALFP_2705 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALFP_2705 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation ALFP_2706 PF00682 HMGL-like ALFP_2706 PF07836 DmpG-like communication domain ALFP_2707 PF07690 Major Facilitator Superfamily ALFP_2710 PF01425 Amidase ALFP_2711 PF00155 Aminotransferase class I and II ALFP_2711 PF00392 Bacterial regulatory proteins, gntR family ALFP_2712 PF07690 Major Facilitator Superfamily ALFP_2713 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_2714 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_2715 PF11339 ALFP_2715 ALFP_2716 PF00108 Thiolase, N-terminal domain ALFP_2716 PF02803 Thiolase, C-terminal domain ALFP_2717 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_2718 PF09361 ALFP_2718 ALFP_2719 PF12698 ABC-2 family transporter protein ALFP_2720 PF00005 ABC transporter ALFP_2720 PF12698 ABC-2 family transporter protein ALFP_2721 PF16576 ALFP_2721 ALFP_2722 PF02321 Outer membrane efflux protein ALFP_2723 PF07167 ALFP_2723 ALFP_2724 PF00440 Bacterial regulatory proteins, tetR family ALFP_2724 PF16859 ALFP_2724 ALFP_2725 PF02592 ALFP_2725 ALFP_2726 PF06508 Queuosine biosynthesis protein QueC ALFP_2727 PF00464 Serine hydroxymethyltransferase ALFP_2728 PF00266 Aminotransferase class-V ALFP_2731 PF00155 Aminotransferase class I and II ALFP_2731 PF00392 Bacterial regulatory proteins, gntR family ALFP_2732 PF00464 Serine hydroxymethyltransferase ALFP_2733 PF11583 P-aminobenzoate N-oxygenase AurF ALFP_2734 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_2734 PF00175 Oxidoreductase NAD-binding domain ALFP_2735 PF00117 Glutamine amidotransferase class-I ALFP_2736 PF08543 Phosphomethylpyrimidine kinase ALFP_2737 PF02028 BCCT family transporter ALFP_2738 PF00376 MerR family regulatory protein ALFP_2738 PF09278 MerR, DNA binding ALFP_2740 PF16576 ALFP_2740 ALFP_2741 PF00873 AcrB/AcrD/AcrF family ALFP_2742 PF02321 Outer membrane efflux protein ALFP_2744 PF03861 ANTAR domain ALFP_2745 PF13433 Periplasmic binding protein domain ALFP_2746 PF02293 AmiS/UreI family transporter ALFP_2748 PF00892 EamA-like transporter family ALFP_2750 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_2751 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO ALFP_2752 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_2753 PF00155 Aminotransferase class I and II ALFP_2753 PF00392 Bacterial regulatory proteins, gntR family ALFP_2754 PF13924 ALFP_2754 ALFP_2755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2755 PF03466 LysR substrate binding domain ALFP_2756 PF00202 Aminotransferase class-III ALFP_2757 PF01177 Asp/Glu/Hydantoin racemase ALFP_2758 PF01548 ALFP_2758 ALFP_2758 PF02371 ALFP_2758 ALFP_2759 PF13385 Concanavalin A-like lectin/glucanases superfamily ALFP_2761 PF04185 Phosphoesterase family ALFP_2761 PF05506 ALFP_2761 ALFP_2764 PF00691 OmpA family ALFP_2764 PF04355 SmpA / OmlA family ALFP_2765 PF03895 YadA-like C-terminal region ALFP_2765 PF05658 Head domain of trimeric autotransporter adhesin ALFP_2765 PF05662 Coiled stalk of trimeric autotransporter adhesin ALFP_2766 PF00563 EAL domain ALFP_2767 PF00239 Resolvase, N terminal domain ALFP_2768 PF00482 Type II secretion system (T2SS), protein F ALFP_2769 PF00437 Type II/IV secretion system protein ALFP_2770 PF00263 ALFP_2770 ALFP_2770 PF03958 Bacterial type II/III secretion system short domain ALFP_2771 PF01203 ALFP_2771 ALFP_2772 PF04612 Type II secretion system (T2SS), protein M ALFP_2773 PF12693 GspL periplasmic domain ALFP_2774 PF03934 Type II secretion system (T2SS), protein K ALFP_2775 PF07963 Prokaryotic N-terminal methylation motif ALFP_2776 PF02501 Type II secretion system (T2SS), protein I ALFP_2776 PF07963 Prokaryotic N-terminal methylation motif ALFP_2777 PF07963 Prokaryotic N-terminal methylation motif ALFP_2778 PF07963 Prokaryotic N-terminal methylation motif ALFP_2778 PF08334 Type II secretion system (T2SS), protein G ALFP_2780 PF00571 CBS domain ALFP_2780 PF04982 ALFP_2780 ALFP_2781 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_2781 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ALFP_2782 PF01925 ALFP_2782 ALFP_2783 PF00206 Lyase ALFP_2783 PF10415 Fumarase C C-terminus ALFP_2785 PF01047 MarR family ALFP_2786 PF11161 ALFP_2786 ALFP_2787 PF00293 NUDIX domain ALFP_2787 PF14803 Nudix N-terminal ALFP_2788 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ALFP_2789 PF04376 ALFP_2789 ALFP_2789 PF04377 ALFP_2789 ALFP_2790 PF01180 Dihydroorotate dehydrogenase ALFP_2791 PF09361 ALFP_2791 ALFP_2793 PF01614 Bacterial transcriptional regulator ALFP_2793 PF09339 IclR helix-turn-helix domain ALFP_2794 PF00994 Probable molybdopterin binding domain ALFP_2795 PF07264 Etoposide-induced protein 2 ALFP_2796 PF00085 Thioredoxin ALFP_2797 PF00270 DEAD/DEAH box helicase ALFP_2797 PF00271 Helicase conserved C-terminal domain ALFP_2798 PF05437 ALFP_2798 ALFP_2799 PF03591 ALFP_2799 ALFP_2800 PF10276 Zinc-finger domain ALFP_2801 PF00561 alpha/beta hydrolase fold ALFP_2802 PF01435 Peptidase family M48 ALFP_2802 PF14559 Tetratricopeptide repeat ALFP_2803 PF09678 ALFP_2803 ALFP_2807 PF01494 FAD binding domain ALFP_2808 PF01207 Dihydrouridine synthase (Dus) ALFP_2809 PF02954 Bacterial regulatory protein, Fis family ALFP_2810 PF01808 AICARFT/IMPCHase bienzyme ALFP_2810 PF02142 MGS-like domain ALFP_2811 PF02075 Crossover junction endodeoxyribonuclease RuvC ALFP_2812 PF01330 RuvA N terminal domain ALFP_2812 PF07499 RuvA, C-terminal domain ALFP_2812 PF14520 Helix-hairpin-helix domain ALFP_2813 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_2814 PF05491 Holliday junction DNA helicase ruvB C-terminus ALFP_2814 PF05496 Holliday junction DNA helicase ruvB N-terminus ALFP_2816 PF01979 Amidohydrolase family ALFP_2817 PF02201 SWIB/MDM2 domain ALFP_2818 PF00875 DNA photolyase ALFP_2818 PF03441 FAD binding domain of DNA photolyase ALFP_2822 PF00581 Rhodanese-like domain ALFP_2823 PF04143 ALFP_2823 ALFP_2826 PF01625 Peptide methionine sulfoxide reductase ALFP_2827 PF00034 Cytochrome c ALFP_2828 PF01790 ALFP_2828 ALFP_2829 PF05164 Cell division protein ZapA ALFP_2831 PF07331 ALFP_2831 ALFP_2832 PF01970 ALFP_2832 ALFP_2833 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2834 PF00005 ABC transporter ALFP_2834 PF08402 TOBE domain ALFP_2835 PF13343 Bacterial extracellular solute-binding protein ALFP_2836 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALFP_2836 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALFP_2837 PF00512 His Kinase A (phospho-acceptor) domain ALFP_2837 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2837 PF08521 ALFP_2837 ALFP_2838 PF00072 Response regulator receiver domain ALFP_2838 PF00486 Transcriptional regulatory protein, C terminal ALFP_2839 PF00293 NUDIX domain ALFP_2840 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALFP_2840 PF03129 Anticodon binding domain ALFP_2840 PF04073 Aminoacyl-tRNA editing domain ALFP_2841 PF03061 Thioesterase superfamily ALFP_2842 PF01618 ALFP_2842 ALFP_2843 PF02472 Biopolymer transport protein ExbD/TolR ALFP_2844 PF13103 TonB C terminal ALFP_2845 PF04052 TolB amino-terminal domain ALFP_2845 PF07676 WD40-like Beta Propeller Repeat ALFP_2846 PF00691 OmpA family ALFP_2847 PF13525 Outer membrane lipoprotein ALFP_2848 PF12697 Alpha/beta hydrolase family ALFP_2849 PF04314 Protein of unknown function (DUF461) ALFP_2850 PF03061 Thioesterase superfamily ALFP_2851 PF01554 MatE ALFP_2852 PF02608 Basic membrane protein ALFP_2853 PF02653 ALFP_2853 ALFP_2854 PF02653 ALFP_2854 ALFP_2855 PF00005 ABC transporter ALFP_2856 PF01679 ALFP_2856 ALFP_2857 PF16654 ALFP_2857 ALFP_2858 PF01810 ALFP_2858 ALFP_2859 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ALFP_2859 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ALFP_2860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2860 PF03466 LysR substrate binding domain ALFP_2861 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_2861 PF13192 Thioredoxin domain ALFP_2862 PF00578 AhpC/TSA family ALFP_2862 PF10417 C-terminal domain of 1-Cys peroxiredoxin ALFP_2863 PF00155 Aminotransferase class I and II ALFP_2863 PF00392 Bacterial regulatory proteins, gntR family ALFP_2864 PF00892 EamA-like transporter family ALFP_2865 PF01507 Phosphoadenosine phosphosulfate reductase family ALFP_2866 PF01507 Phosphoadenosine phosphosulfate reductase family ALFP_2867 PF00009 Elongation factor Tu GTP binding domain ALFP_2868 PF00324 Amino acid permease ALFP_2869 PF00171 Aldehyde dehydrogenase family ALFP_2870 PF01266 FAD dependent oxidoreductase ALFP_2871 PF07063 Domain of unknown function (DUF1338) ALFP_2872 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2872 PF03466 LysR substrate binding domain ALFP_2873 PF00871 Acetokinase family ALFP_2874 PF01515 Phosphate acetyl/butaryl transferase ALFP_2875 PF07080 Protein of unknown function (DUF1348) ALFP_2876 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2876 PF03466 LysR substrate binding domain ALFP_2877 PF02678 Pirin ALFP_2878 PF01548 ALFP_2878 ALFP_2878 PF02371 ALFP_2878 ALFP_2879 PF00990 GGDEF domain ALFP_2880 PF01425 Amidase ALFP_2882 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase ALFP_2883 PF00166 Chaperonin 10 Kd subunit ALFP_2884 PF00118 TCP-1/cpn60 chaperonin family ALFP_2885 PF01219 Prokaryotic diacylglycerol kinase ALFP_2886 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ALFP_2888 PF02515 CoA-transferase family III ALFP_2889 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_2890 PF01614 Bacterial transcriptional regulator ALFP_2890 PF09339 IclR helix-turn-helix domain ALFP_2891 PF02464 Competence-damaged protein ALFP_2892 PF04608 Phosphatidylglycerophosphatase A ALFP_2893 PF00586 AIR synthase related protein, N-terminal domain ALFP_2893 PF02769 AIR synthase related protein, C-terminal domain ALFP_2894 PF01029 NusB family ALFP_2895 PF00885 6,7-dimethyl-8-ribityllumazine synthase ALFP_2896 PF00925 GTP cyclohydrolase II ALFP_2896 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ALFP_2897 PF01614 Bacterial transcriptional regulator ALFP_2897 PF09339 IclR helix-turn-helix domain ALFP_2898 PF01928 CYTH domain ALFP_2898 PF05235 CHAD domain ALFP_2899 PF00448 SRP54-type protein, GTPase domain ALFP_2899 PF02881 SRP54-type protein, helical bundle domain ALFP_2900 PF03602 Conserved hypothetical protein 95 ALFP_2901 PF01467 Cytidylyltransferase ALFP_2902 PF00037 4Fe-4S binding domain ALFP_2903 PF03476 MOSC N-terminal beta barrel domain ALFP_2904 PF05170 ALFP_2904 ALFP_2905 PF01053 Cys/Met metabolism PLP-dependent enzyme ALFP_2906 PF06078 Bacterial protein of unknown function (DUF937) ALFP_2907 PF02423 Ornithine cyclodeaminase/mu-crystallin family ALFP_2908 PF07238 PilZ domain ALFP_2908 PF07317 Flagellar regulator YcgR ALFP_2909 PF12804 MobA-like NTP transferase domain ALFP_2910 PF03797 Autotransporter beta-domain ALFP_2911 PF00857 Isochorismatase family ALFP_2913 PF00561 alpha/beta hydrolase fold ALFP_2914 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALFP_2915 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_2915 PF01799 [2Fe-2S] binding domain ALFP_2916 PF00034 Cytochrome c ALFP_2916 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_2917 PF06041 Bacterial protein of unknown function (DUF924) ALFP_2918 PF00005 ABC transporter ALFP_2919 PF00005 ABC transporter ALFP_2920 PF02653 ALFP_2920 ALFP_2921 PF13458 Periplasmic binding protein ALFP_2923 PF01804 Penicillin amidase ALFP_2924 PF00990 GGDEF domain ALFP_2925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2925 PF03466 LysR substrate binding domain ALFP_2926 PF00884 Sulfatase ALFP_2926 PF16347 ALFP_2926 ALFP_2927 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_2930 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_2931 PF12706 Beta-lactamase superfamily domain ALFP_2932 PF00392 Bacterial regulatory proteins, gntR family ALFP_2932 PF07702 UTRA domain ALFP_2933 PF03704 Bacterial transcriptional activator domain ALFP_2933 PF13191 AAA ATPase domain ALFP_2934 PF13091 PLD-like domain ALFP_2935 PF00892 EamA-like transporter family ALFP_2936 PF01256 Carbohydrate kinase ALFP_2936 PF03853 YjeF-related protein N-terminus ALFP_2937 PF02625 XdhC and CoxI family ALFP_2937 PF13478 XdhC Rossmann domain ALFP_2938 PF06808 ALFP_2938 ALFP_2939 PF04290 ALFP_2939 ALFP_2940 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_2941 PF00005 ABC transporter ALFP_2942 PF09084 NMT1/THI5 like ALFP_2943 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_2943 PF01799 [2Fe-2S] binding domain ALFP_2943 PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) ALFP_2944 PF00941 FAD binding domain in molybdopterin dehydrogenase ALFP_2945 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_2945 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALFP_2946 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_2947 PF00355 Rieske [2Fe-2S] domain ALFP_2948 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_2948 PF14759 Reductase C-terminal ALFP_2949 PF00355 Rieske [2Fe-2S] domain ALFP_2949 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_2950 PF00866 Ring hydroxylating beta subunit ALFP_2951 PF01548 ALFP_2951 ALFP_2951 PF02371 ALFP_2951 ALFP_2952 PF00857 Isochorismatase family ALFP_2954 PF12697 Alpha/beta hydrolase family ALFP_2955 PF04909 Amidohydrolase ALFP_2956 PF01047 MarR family ALFP_2957 PF00005 ABC transporter ALFP_2958 PF01032 FecCD transport family ALFP_2959 PF01497 Periplasmic binding protein ALFP_2960 PF00593 TonB dependent receptor ALFP_2960 PF07715 TonB-dependent Receptor Plug Domain ALFP_2961 PF02667 ALFP_2961 ALFP_2962 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_2962 PF03466 LysR substrate binding domain ALFP_2963 PF01979 Amidohydrolase family ALFP_2964 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_2965 PF00929 Exonuclease ALFP_2966 PF00873 AcrB/AcrD/AcrF family ALFP_2967 PF16576 ALFP_2967 ALFP_2968 PF00075 RNase H ALFP_2969 PF08241 Methyltransferase domain ALFP_2970 PF00753 Metallo-beta-lactamase superfamily ALFP_2970 PF16123 ALFP_2970 ALFP_2971 PF01464 Transglycosylase SLT domain ALFP_2971 PF01476 LysM domain ALFP_2972 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_2973 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_2975 PF00941 FAD binding domain in molybdopterin dehydrogenase ALFP_2975 PF03450 CO dehydrogenase flavoprotein C-terminal domain ALFP_2976 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_2976 PF01799 [2Fe-2S] binding domain ALFP_2977 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_2977 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALFP_2978 PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) ALFP_2979 PF01047 MarR family ALFP_2980 PF00072 Response regulator receiver domain ALFP_2980 PF00158 Sigma-54 interaction domain ALFP_2980 PF02954 Bacterial regulatory protein, Fis family ALFP_2981 PF00512 His Kinase A (phospho-acceptor) domain ALFP_2981 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_2981 PF02743 Cache domain ALFP_2982 PF00375 Sodium:dicarboxylate symporter family ALFP_2983 PF13410 Glutathione S-transferase, C-terminal domain ALFP_2983 PF13417 Glutathione S-transferase, N-terminal domain ALFP_2985 PF00581 Rhodanese-like domain ALFP_2986 PF04307 ALFP_2986 ALFP_2987 PF12889 Protein of unknown function (DUF3829) ALFP_2988 PF13767 ALFP_2988 ALFP_2989 PF04214 ALFP_2989 ALFP_2990 PF04073 Aminoacyl-tRNA editing domain ALFP_2991 PF00158 Sigma-54 interaction domain ALFP_2992 PF13628 ALFP_2992 ALFP_2993 PF00309 ALFP_2993 ALFP_2993 PF04552 Sigma-54, DNA binding domain ALFP_2993 PF04963 Sigma-54 factor, core binding domain ALFP_2994 PF00982 Glycosyltransferase family 20 ALFP_2995 PF00924 Mechanosensitive ion channel ALFP_2996 PF10685 ALFP_2996 ALFP_2997 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_2998 PF02358 Trehalose-phosphatase ALFP_2999 PF11379 ALFP_2999 ALFP_3000 PF00326 Prolyl oligopeptidase family ALFP_3001 PF05995 Cysteine dioxygenase type I ALFP_3002 PF00378 Enoyl-CoA hydratase/isomerase family ALFP_3003 PF13380 CoA binding domain ALFP_3003 PF13549 ATP-grasp domain ALFP_3003 PF13607 Succinyl-CoA ligase like flavodoxin domain ALFP_3004 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_3005 PF00107 Zinc-binding dehydrogenase ALFP_3005 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_3006 PF02515 CoA-transferase family III ALFP_3007 PF00378 Enoyl-CoA hydratase/isomerase family ALFP_3008 PF01614 Bacterial transcriptional regulator ALFP_3008 PF09339 IclR helix-turn-helix domain ALFP_3009 PF10649 ALFP_3009 ALFP_3010 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_3010 PF13602 Zinc-binding dehydrogenase ALFP_3011 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALFP_3012 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3012 PF03466 LysR substrate binding domain ALFP_3013 PF13419 Haloacid dehalogenase-like hydrolase ALFP_3014 PF00465 Iron-containing alcohol dehydrogenase ALFP_3015 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3016 PF00005 ABC transporter ALFP_3017 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein ALFP_3018 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3018 PF03466 LysR substrate binding domain ALFP_3019 PF00501 AMP-binding enzyme ALFP_3019 PF13193 AMP-binding enzyme C-terminal domain ALFP_3021 PF01810 ALFP_3021 ALFP_3022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3022 PF03466 LysR substrate binding domain ALFP_3023 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_3024 PF12840 Helix-turn-helix domain ALFP_3025 PF02040 ALFP_3025 ALFP_3026 PF03960 ArsC family ALFP_3027 PF03358 NADPH-dependent FMN reductase ALFP_3028 PF00072 Response regulator receiver domain ALFP_3028 PF00486 Transcriptional regulatory protein, C terminal ALFP_3029 PF00512 His Kinase A (phospho-acceptor) domain ALFP_3029 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_3029 PF08521 ALFP_3029 ALFP_3030 PF04076 Bacterial OB fold (BOF) protein ALFP_3033 PF00816 H-NS histone family ALFP_3034 PF07424 ALFP_3034 ALFP_3035 PF01464 Transglycosylase SLT domain ALFP_3037 PF05101 ALFP_3037 ALFP_3038 PF03135 ALFP_3038 ALFP_3040 PF17383 ALFP_3040 ALFP_3041 PF07996 Type IV secretion system proteins ALFP_3042 PF04610 ALFP_3042 ALFP_3043 PF04335 VirB8 protein ALFP_3044 PF03524 Conjugal transfer protein ALFP_3045 PF03743 Bacterial conjugation TrbI-like protein ALFP_3046 PF00437 Type II/IV secretion system protein ALFP_3052 PF10412 Type IV secretion-system coupling protein DNA-binding domain ALFP_3053 PF08751 TrwC relaxase ALFP_3053 PF13604 AAA domain ALFP_3055 PF05015 Plasmid maintenance system killer protein ALFP_3056 PF05721 Phytanoyl-CoA dioxygenase (PhyH) ALFP_3057 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein ALFP_3058 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3059 PF00005 ABC transporter ALFP_3060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALFP_3060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_3061 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3061 PF03466 LysR substrate binding domain ALFP_3062 PF02384 N-6 DNA Methylase ALFP_3063 PF00589 Phage integrase family ALFP_3063 PF12167 ALFP_3063 ALFP_3063 PF14659 Phage integrase, N-terminal SAM-like domain ALFP_3064 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ALFP_3064 PF01872 RibD C-terminal domain ALFP_3065 PF03477 ATP cone domain ALFP_3066 PF00464 Serine hydroxymethyltransferase ALFP_3067 PF01161 Phosphatidylethanolamine-binding protein ALFP_3068 PF00579 tRNA synthetases class I (W and Y) ALFP_3068 PF01479 S4 domain ALFP_3069 PF01551 Peptidase family M23 ALFP_3070 PF03702 Uncharacterised protein family (UPF0075) ALFP_3071 PF01521 Iron-sulphur cluster biosynthesis ALFP_3073 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALFP_3073 PF02774 Semialdehyde dehydrogenase, dimerisation domain ALFP_3074 PF00380 Ribosomal protein S9/S16 ALFP_3075 PF00572 Ribosomal protein L13 ALFP_3076 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_3077 PF01523 Putative modulator of DNA gyrase ALFP_3078 PF04751 Protein of unknown function (DUF615) ALFP_3079 PF02230 Phospholipase/Carboxylesterase ALFP_3080 PF13302 Acetyltransferase (GNAT) domain ALFP_3080 PF13549 ATP-grasp domain ALFP_3080 PF13607 Succinyl-CoA ligase like flavodoxin domain ALFP_3081 PF00122 E1-E2 ATPase ALFP_3081 PF00689 Cation transporting ATPase, C-terminus ALFP_3081 PF00690 Cation transporter/ATPase, N-terminus ALFP_3081 PF00702 haloacid dehalogenase-like hydrolase ALFP_3082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_3083 PF00072 Response regulator receiver domain ALFP_3083 PF00196 Bacterial regulatory proteins, luxR family ALFP_3084 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALFP_3085 PF01548 ALFP_3085 ALFP_3085 PF02371 ALFP_3085 ALFP_3086 PF01979 Amidohydrolase family ALFP_3087 PF00860 Permease family ALFP_3088 PF00561 alpha/beta hydrolase fold ALFP_3089 PF00355 Rieske [2Fe-2S] domain ALFP_3090 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_3091 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_3091 PF00175 Oxidoreductase NAD-binding domain ALFP_3092 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3092 PF03466 LysR substrate binding domain ALFP_3093 PF07152 YaeQ protein ALFP_3095 PF01037 AsnC family ALFP_3095 PF13412 Winged helix-turn-helix DNA-binding ALFP_3096 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ALFP_3098 PF02325 ALFP_3098 ALFP_3099 PF00730 HhH-GPD superfamily base excision DNA repair protein ALFP_3099 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALFP_3099 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALFP_3100 PF05433 ALFP_3100 ALFP_3101 PF00294 pfkB family carbohydrate kinase ALFP_3102 PF11906 ALFP_3102 ALFP_3103 PF06325 Ribosomal protein L11 methyltransferase (PrmA) ALFP_3104 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain ALFP_3104 PF02785 Biotin carboxylase C-terminal domain ALFP_3104 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALFP_3105 PF00364 Biotin-requiring enzyme ALFP_3106 PF01220 Dehydroquinase class II ALFP_3107 PF00578 AhpC/TSA family ALFP_3108 PF01225 Mur ligase family, catalytic domain ALFP_3108 PF02875 Mur ligase family, glutamate ligase domain ALFP_3108 PF08245 Mur ligase middle domain ALFP_3109 PF05728 Uncharacterised protein family (UPF0227) ALFP_3110 PF00773 RNB domain ALFP_3111 PF13103 TonB C terminal ALFP_3112 PF01488 Shikimate / quinate 5-dehydrogenase ALFP_3112 PF08501 Shikimate dehydrogenase substrate binding domain ALFP_3113 PF00912 Transglycosylase ALFP_3114 PF03739 ALFP_3114 ALFP_3115 PF00149 Calcineurin-like phosphoesterase ALFP_3116 PF01553 Acyltransferase ALFP_3117 PF03652 Uncharacterised protein family (UPF0081) ALFP_3118 PF02622 Uncharacterized ACR, COG1678 ALFP_3119 PF08543 Phosphomethylpyrimidine kinase ALFP_3120 PF02581 Thiamine monophosphate synthase/TENI ALFP_3122 PF00202 Aminotransferase class-III ALFP_3124 PF00202 Aminotransferase class-III ALFP_3126 PF00501 AMP-binding enzyme ALFP_3127 PF01047 MarR family ALFP_3128 PF01960 ArgJ family ALFP_3129 PF07043 ALFP_3129 ALFP_3130 PF05532 CsbD-like ALFP_3132 PF00829 Ribosomal prokaryotic L21 protein ALFP_3133 PF01016 Ribosomal L27 protein ALFP_3134 PF01018 GTP1/OBG ALFP_3134 PF01926 50S ribosome-binding GTPase ALFP_3135 PF00696 Amino acid kinase family ALFP_3135 PF01472 PUA domain ALFP_3136 PF01266 FAD dependent oxidoreductase ALFP_3137 PF00486 Transcriptional regulatory protein, C terminal ALFP_3138 PF01381 Helix-turn-helix ALFP_3139 PF01381 Helix-turn-helix ALFP_3140 PF01964 ThiC family ALFP_3140 PF13667 ThiC-associated domain ALFP_3141 PF00691 OmpA family ALFP_3141 PF13488 ALFP_3141 ALFP_3142 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_3143 PF00005 ABC transporter ALFP_3144 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3145 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3146 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_3147 PF00005 ABC transporter ALFP_3148 PF02687 ALFP_3148 ALFP_3149 PF00730 HhH-GPD superfamily base excision DNA repair protein ALFP_3149 PF14815 NUDIX domain ALFP_3150 PF01098 ALFP_3150 ALFP_3151 PF00905 Penicillin binding protein transpeptidase domain ALFP_3151 PF03717 Penicillin-binding Protein dimerisation domain ALFP_3152 PF04093 ALFP_3152 ALFP_3153 PF04085 rod shape-determining protein MreC ALFP_3154 PF06723 MreB/Mbl protein ALFP_3155 PF02686 Glu-tRNAGln amidotransferase C subunit ALFP_3156 PF01425 Amidase ALFP_3157 PF02637 GatB domain ALFP_3157 PF02934 GatB/GatE catalytic domain ALFP_3158 PF00156 Phosphoribosyl transferase domain ALFP_3159 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3159 PF03466 LysR substrate binding domain ALFP_3160 PF07681 ALFP_3160 ALFP_3161 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ALFP_3162 PF03372 Endonuclease/Exonuclease/phosphatase family ALFP_3163 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_3164 PF00394 Multicopper oxidase ALFP_3164 PF07732 Multicopper oxidase ALFP_3165 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_3166 PF00158 Sigma-54 interaction domain ALFP_3166 PF02954 Bacterial regulatory protein, Fis family ALFP_3167 PF00027 Cyclic nucleotide-binding domain ALFP_3167 PF13545 Crp-like helix-turn-helix domain ALFP_3168 PF03781 Sulfatase-modifying factor enzyme 1 ALFP_3169 PF03616 ALFP_3169 ALFP_3170 PF00348 Polyprenyl synthetase ALFP_3171 PF05673 Protein of unknown function (DUF815) ALFP_3172 PF00293 NUDIX domain ALFP_3172 PF02581 Thiamine monophosphate synthase/TENI ALFP_3173 PF01564 Spermine/spermidine synthase ALFP_3174 PF02321 Outer membrane efflux protein ALFP_3175 PF00873 AcrB/AcrD/AcrF family ALFP_3176 PF00873 AcrB/AcrD/AcrF family ALFP_3177 PF13437 HlyD family secretion protein ALFP_3177 PF13533 Biotin-lipoyl like ALFP_3178 PF07072 Protein of unknown function (DUF1342) ALFP_3179 PF01121 Dephospho-CoA kinase ALFP_3181 PF00196 Bacterial regulatory proteins, luxR family ALFP_3182 PF02569 Pantoate-beta-alanine ligase ALFP_3183 PF02616 ScpA/B protein ALFP_3184 PF11943 ALFP_3184 ALFP_3185 PF07690 Major Facilitator Superfamily ALFP_3186 PF13560 Helix-turn-helix domain ALFP_3187 PF00809 Pterin binding enzyme ALFP_3187 PF02310 B12 binding domain ALFP_3187 PF02574 Homocysteine S-methyltransferase ALFP_3187 PF02607 B12 binding domain ALFP_3187 PF02965 Vitamin B12 dependent methionine synthase, activation domain ALFP_3188 PF00593 TonB dependent receptor ALFP_3188 PF07715 TonB-dependent Receptor Plug Domain ALFP_3189 PF01497 Periplasmic binding protein ALFP_3190 PF00593 TonB dependent receptor ALFP_3190 PF07715 TonB-dependent Receptor Plug Domain ALFP_3191 PF04773 FecR protein ALFP_3191 PF16220 ALFP_3191 ALFP_3192 PF04542 Sigma-70 region 2 ALFP_3192 PF08281 Sigma-70, region 4 ALFP_3194 PF00122 E1-E2 ATPase ALFP_3194 PF00690 Cation transporter/ATPase, N-terminus ALFP_3194 PF13609 Gram-negative porin ALFP_3195 PF01544 CorA-like Mg2+ transporter protein ALFP_3196 PF01544 CorA-like Mg2+ transporter protein ALFP_3198 PF01544 CorA-like Mg2+ transporter protein ALFP_3202 PF05690 Thiazole biosynthesis protein ThiG ALFP_3203 PF08543 Phosphomethylpyrimidine kinase ALFP_3204 PF01048 Phosphorylase superfamily ALFP_3205 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) ALFP_3206 PF02321 Outer membrane efflux protein ALFP_3207 PF01467 Cytidylyltransferase ALFP_3209 PF03109 ALFP_3209 ALFP_3210 PF02036 SCP-2 sterol transfer family ALFP_3211 PF04280 Tim44-like domain ALFP_3212 PF01209 ubiE/COQ5 methyltransferase family ALFP_3213 PF00072 Response regulator receiver domain ALFP_3213 PF00486 Transcriptional regulatory protein, C terminal ALFP_3214 PF00512 His Kinase A (phospho-acceptor) domain ALFP_3214 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_3214 PF11808 ALFP_3214 ALFP_3215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_3216 PF02682 Allophanate hydrolase subunit 1 ALFP_3217 PF02626 Allophanate hydrolase subunit 2 ALFP_3218 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_3218 PF00585 C-terminal regulatory domain of Threonine dehydratase ALFP_3219 PF09335 ALFP_3219 ALFP_3220 PF01565 FAD binding domain ALFP_3220 PF02754 ALFP_3220 ALFP_3220 PF02913 FAD linked oxidases, C-terminal domain ALFP_3220 PF11880 ALFP_3220 ALFP_3220 PF12447 ALFP_3220 ALFP_3220 PF13183 4Fe-4S dicluster domain ALFP_3221 PF01243 Pyridoxamine 5'-phosphate oxidase ALFP_3222 PF00082 Subtilase family ALFP_3222 PF03797 Autotransporter beta-domain ALFP_3222 PF12951 ALFP_3222 ALFP_3223 PF00156 Phosphoribosyl transferase domain ALFP_3225 PF00005 ABC transporter ALFP_3225 PF00664 ABC transporter transmembrane region ALFP_3226 PF00005 ABC transporter ALFP_3226 PF00664 ABC transporter transmembrane region ALFP_3227 PF08173 ALFP_3227 ALFP_3228 PF02322 ALFP_3228 ALFP_3229 PF01654 ALFP_3229 ALFP_3230 PF12802 MarR family ALFP_3231 PF00571 CBS domain ALFP_3231 PF01380 SIS domain ALFP_3232 PF08282 haloacid dehalogenase-like hydrolase ALFP_3233 PF06835 Lipopolysaccharide-assembly, LptC-related ALFP_3234 PF03968 OstA-like protein ALFP_3235 PF00005 ABC transporter ALFP_3235 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_3236 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ALFP_3237 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ALFP_3238 PF02603 HPr Serine kinase N terminus ALFP_3238 PF07475 HPr Serine kinase C-terminal domain ALFP_3239 PF03668 ALFP_3239 ALFP_3240 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel ALFP_3240 PF05036 Sporulation related domain ALFP_3241 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALFP_3242 PF02021 Uncharacterised protein family UPF0102 ALFP_3243 PF13580 SIS domain ALFP_3244 PF04972 BON domain ALFP_3245 PF08534 Redoxin ALFP_3246 PF00696 Amino acid kinase family ALFP_3247 PF13419 Haloacid dehalogenase-like hydrolase ALFP_3248 PF00171 Aldehyde dehydrogenase family ALFP_3249 PF12833 Helix-turn-helix domain ALFP_3249 PF14525 ALFP_3249 ALFP_3250 PF00899 ThiF family ALFP_3251 PF03572 Peptidase family S41 ALFP_3251 PF13180 PDZ domain ALFP_3252 PF01551 Peptidase family M23 ALFP_3253 PF00300 Histidine phosphatase superfamily (branch 1) ALFP_3254 PF00581 Rhodanese-like domain ALFP_3255 PF00462 Glutaredoxin ALFP_3256 PF02556 Preprotein translocase subunit SecB ALFP_3257 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ALFP_3257 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ALFP_3258 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_3259 PF00588 SpoU rRNA Methylase family ALFP_3260 PF00156 Phosphoribosyl transferase domain ALFP_3261 PF08241 Methyltransferase domain ALFP_3262 PF00593 TonB dependent receptor ALFP_3262 PF07715 TonB-dependent Receptor Plug Domain ALFP_3263 PF00072 Response regulator receiver domain ALFP_3263 PF00486 Transcriptional regulatory protein, C terminal ALFP_3264 PF00512 His Kinase A (phospho-acceptor) domain ALFP_3264 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_3265 PF00885 6,7-dimethyl-8-ribityllumazine synthase ALFP_3266 PF00072 Response regulator receiver domain ALFP_3266 PF02954 Bacterial regulatory protein, Fis family ALFP_3267 PF00512 His Kinase A (phospho-acceptor) domain ALFP_3267 PF00672 HAMP domain ALFP_3267 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_3268 PF14334 ALFP_3268 ALFP_3269 PF01189 NOL1/NOP2/sun family ALFP_3270 PF00919 Uncharacterized protein family UPF0004 ALFP_3270 PF01938 TRAM domain ALFP_3270 PF04055 Radical SAM superfamily ALFP_3271 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_3272 PF01177 Asp/Glu/Hydantoin racemase ALFP_3273 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3273 PF03466 LysR substrate binding domain ALFP_3275 PF03328 HpcH/HpaI aldolase/citrate lyase family ALFP_3276 PF00005 ABC transporter ALFP_3277 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3278 PF13379 NMT1-like family ALFP_3280 PF14897 ALFP_3280 ALFP_3281 PF13692 Glycosyl transferases group 1 ALFP_3282 PF00483 Nucleotidyl transferase ALFP_3282 PF01050 Mannose-6-phosphate isomerase ALFP_3283 PF00535 Glycosyl transferase family 2 ALFP_3284 PF00535 Glycosyl transferase family 2 ALFP_3285 PF02397 ALFP_3285 ALFP_3286 PF04932 ALFP_3286 ALFP_3287 PF01943 ALFP_3287 ALFP_3287 PF14667 Polysaccharide biosynthesis C-terminal domain ALFP_3288 PF16363 ALFP_3288 ALFP_3289 PF00483 Nucleotidyl transferase ALFP_3290 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ALFP_3291 PF04321 RmlD substrate binding domain ALFP_3292 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ALFP_3293 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALFP_3293 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALFP_3294 PF00231 ATP synthase ALFP_3295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALFP_3295 PF00306 ATP synthase alpha/beta chain, C terminal domain ALFP_3295 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALFP_3296 PF00213 ATP synthase delta (OSCP) subunit ALFP_3297 PF00430 ATP synthase B/B' CF(0) ALFP_3298 PF00137 ATP synthase subunit C ALFP_3299 PF00119 ATP synthase A chain ALFP_3300 PF03899 ALFP_3300 ALFP_3301 PF00378 Enoyl-CoA hydratase/isomerase family ALFP_3302 PF05299 M61 glycyl aminopeptidase ALFP_3302 PF13180 PDZ domain ALFP_3303 PF02152 Dihydroneopterin aldolase ALFP_3304 PF01171 PP-loop family ALFP_3305 PF02441 Flavoprotein ALFP_3306 PF00462 Glutaredoxin ALFP_3307 PF13847 Methyltransferase domain ALFP_3308 PF00472 RF-1 domain ALFP_3308 PF03462 PCRF domain ALFP_3309 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ALFP_3309 PF01488 Shikimate / quinate 5-dehydrogenase ALFP_3309 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ALFP_3310 PF04542 Sigma-70 region 2 ALFP_3310 PF08281 Sigma-70, region 4 ALFP_3311 PF12545 ALFP_3311 ALFP_3312 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ALFP_3312 PF08479 POTRA domain, ShlB-type ALFP_3314 PF10294 Putative methyltransferase ALFP_3315 PF13649 Methyltransferase domain ALFP_3316 PF00593 TonB dependent receptor ALFP_3316 PF07660 Secretin and TonB N terminus short domain ALFP_3316 PF07715 TonB-dependent Receptor Plug Domain ALFP_3317 PF04773 FecR protein ALFP_3317 PF16220 ALFP_3317 ALFP_3317 PF16344 ALFP_3317 ALFP_3318 PF04542 Sigma-70 region 2 ALFP_3318 PF08281 Sigma-70, region 4 ALFP_3319 PF04341 ALFP_3319 ALFP_3320 PF00474 Sodium:solute symporter family ALFP_3321 PF00795 Carbon-nitrogen hydrolase ALFP_3322 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3322 PF03466 LysR substrate binding domain ALFP_3323 PF00080 Copper/zinc superoxide dismutase (SODC) ALFP_3324 PF16242 ALFP_3324 ALFP_3325 PF05145 ALFP_3325 ALFP_3326 PF01970 ALFP_3326 ALFP_3327 PF07331 ALFP_3327 ALFP_3328 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_3329 PF00512 His Kinase A (phospho-acceptor) domain ALFP_3329 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_3329 PF08521 ALFP_3329 ALFP_3330 PF00072 Response regulator receiver domain ALFP_3330 PF00486 Transcriptional regulatory protein, C terminal ALFP_3331 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3331 PF03466 LysR substrate binding domain ALFP_3332 PF00083 Sugar (and other) transporter ALFP_3332 PF07690 Major Facilitator Superfamily ALFP_3333 PF00795 Carbon-nitrogen hydrolase ALFP_3334 PF13560 Helix-turn-helix domain ALFP_3335 PF00593 TonB dependent receptor ALFP_3335 PF07715 TonB-dependent Receptor Plug Domain ALFP_3337 PF00005 ABC transporter ALFP_3338 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3339 PF02621 Menaquinone biosynthesis ALFP_3340 PF00027 Cyclic nucleotide-binding domain ALFP_3340 PF13545 Crp-like helix-turn-helix domain ALFP_3341 PF01152 Bacterial-like globin ALFP_3341 PF09313 Domain of unknown function (DUF1971) ALFP_3342 PF00384 Molybdopterin oxidoreductase ALFP_3342 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALFP_3343 PF00384 Molybdopterin oxidoreductase ALFP_3343 PF01568 Molydopterin dinucleotide binding domain ALFP_3344 PF09163 Formate dehydrogenase N, transmembrane ALFP_3344 PF13247 4Fe-4S dicluster domain ALFP_3345 PF01292 Prokaryotic cytochrome b561 ALFP_3346 PF04216 Protein involved in formate dehydrogenase formation ALFP_3347 PF03841 L-seryl-tRNA selenium transferase ALFP_3347 PF12390 ALFP_3347 ALFP_3348 PF00009 Elongation factor Tu GTP binding domain ALFP_3348 PF03144 Elongation factor Tu domain 2 ALFP_3348 PF09106 Elongation factor SelB, winged helix ALFP_3348 PF09107 Elongation factor SelB, winged helix ALFP_3349 PF01381 Helix-turn-helix ALFP_3349 PF07883 Cupin domain ALFP_3350 PF00596 Class II Aldolase and Adducin N-terminal domain ALFP_3351 PF13410 Glutathione S-transferase, C-terminal domain ALFP_3351 PF13417 Glutathione S-transferase, N-terminal domain ALFP_3352 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_3353 PF00593 TonB dependent receptor ALFP_3353 PF07715 TonB-dependent Receptor Plug Domain ALFP_3355 PF00593 TonB dependent receptor ALFP_3355 PF07715 TonB-dependent Receptor Plug Domain ALFP_3356 PF00586 AIR synthase related protein, N-terminal domain ALFP_3356 PF02769 AIR synthase related protein, C-terminal domain ALFP_3357 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_3358 PF12706 Beta-lactamase superfamily domain ALFP_3359 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3359 PF03466 LysR substrate binding domain ALFP_3361 PF12801 ALFP_3361 ALFP_3363 PF05048 Periplasmic copper-binding protein (NosD) ALFP_3364 PF00005 ABC transporter ALFP_3365 PF12679 ALFP_3365 ALFP_3366 PF05573 NosL ALFP_3367 PF02424 ApbE family ALFP_3368 PF00342 Phosphoglucose isomerase ALFP_3370 PF01850 PIN domain ALFP_3371 PF00884 Sulfatase ALFP_3372 PF00106 short chain dehydrogenase ALFP_3373 PF13641 Glycosyltransferase like family 2 ALFP_3374 PF13524 Glycosyl transferases group 1 ALFP_3375 PF13579 Glycosyl transferase 4-like domain ALFP_3375 PF13692 Glycosyl transferases group 1 ALFP_3378 PF14305 ALFP_3378 ALFP_3379 PF00534 Glycosyl transferases group 1 ALFP_3380 PF13692 Glycosyl transferases group 1 ALFP_3381 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALFP_3381 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALFP_3381 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALFP_3382 PF02350 UDP-N-acetylglucosamine 2-epimerase ALFP_3384 PF00005 ABC transporter ALFP_3385 PF01061 ALFP_3385 ALFP_3386 PF02563 Polysaccharide biosynthesis/export protein ALFP_3387 PF00155 Aminotransferase class I and II ALFP_3388 PF00107 Zinc-binding dehydrogenase ALFP_3388 PF00109 Beta-ketoacyl synthase, N-terminal domain ALFP_3388 PF00550 Phosphopantetheine attachment site ALFP_3388 PF00698 Acyl transferase domain ALFP_3388 PF02801 Beta-ketoacyl synthase, C-terminal domain ALFP_3388 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_3388 PF08659 KR domain ALFP_3388 PF13489 Methyltransferase domain ALFP_3388 PF14765 Polyketide synthase dehydratase ALFP_3388 PF16197 ALFP_3388 ALFP_3390 PF00860 Permease family ALFP_3391 PF00892 EamA-like transporter family ALFP_3392 PF00155 Aminotransferase class I and II ALFP_3392 PF00392 Bacterial regulatory proteins, gntR family ALFP_3393 PF00892 EamA-like transporter family ALFP_3394 PF08308 ALFP_3394 ALFP_3395 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) ALFP_3396 PF06744 ALFP_3396 ALFP_3396 PF06761 ALFP_3396 ALFP_3396 PF14331 ALFP_3396 ALFP_3397 PF00691 OmpA family ALFP_3397 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) ALFP_3398 PF05936 ALFP_3398 ALFP_3399 PF12790 Type VI secretion lipoprotein ALFP_3402 PF06996 ALFP_3402 ALFP_3403 PF05947 ALFP_3403 ALFP_3404 PF04965 Gene 25-like lysozyme ALFP_3405 PF05638 Protein of unknown function (DUF796) ALFP_3406 PF05943 ALFP_3406 ALFP_3407 PF05591 ALFP_3407 ALFP_3408 PF06812 ALFP_3408 ALFP_3410 PF13665 ALFP_3410 ALFP_3411 PF00805 Pentapeptide repeats (8 copies) ALFP_3411 PF13599 Pentapeptide repeats (9 copies) ALFP_3412 PF00805 Pentapeptide repeats (8 copies) ALFP_3412 PF09937 ALFP_3412 ALFP_3412 PF13599 Pentapeptide repeats (9 copies) ALFP_3414 PF05954 Phage late control gene D protein (GPD) ALFP_3415 PF12059 ALFP_3415 ALFP_3416 PF00108 Thiolase, N-terminal domain ALFP_3416 PF02803 Thiolase, C-terminal domain ALFP_3417 PF00378 Enoyl-CoA hydratase/isomerase family ALFP_3417 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALFP_3417 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALFP_3418 PF02417 ALFP_3418 ALFP_3419 PF02417 ALFP_3419 ALFP_3420 PF00005 ABC transporter ALFP_3421 PF02405 ALFP_3421 ALFP_3422 PF02470 ALFP_3422 ALFP_3423 PF04333 ALFP_3423 ALFP_3424 PF05494 Toluene tolerance, Ttg2 ALFP_3425 PF00005 ABC transporter ALFP_3426 PF01061 ALFP_3426 ALFP_3427 PF01722 BolA-like protein ALFP_3428 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALFP_3429 PF01634 ATP phosphoribosyltransferase ALFP_3430 PF00815 Histidinol dehydrogenase ALFP_3431 PF00475 Imidazoleglycerol-phosphate dehydratase ALFP_3432 PF00117 Glutamine amidotransferase class-I ALFP_3433 PF00977 Histidine biosynthesis protein ALFP_3434 PF00977 Histidine biosynthesis protein ALFP_3435 PF01502 Phosphoribosyl-AMP cyclohydrolase ALFP_3436 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ALFP_3437 PF01230 HIT domain ALFP_3438 PF02416 mttA/Hcf106 family ALFP_3439 PF02416 mttA/Hcf106 family ALFP_3440 PF00902 Sec-independent protein translocase protein (TatC) ALFP_3441 PF13180 PDZ domain ALFP_3441 PF13365 Trypsin-like peptidase domain ALFP_3442 PF01784 NIF3 (NGG1p interacting factor 3) ALFP_3443 PF01741 Large-conductance mechanosensitive channel, MscL ALFP_3444 PF00355 Rieske [2Fe-2S] domain ALFP_3445 PF00032 Cytochrome b(C-terminal)/b6/petD ALFP_3445 PF00033 Cytochrome b(N-terminal)/b6/petB ALFP_3446 PF02167 Cytochrome C1 family ALFP_3447 PF02798 Glutathione S-transferase, N-terminal domain ALFP_3447 PF13410 Glutathione S-transferase, C-terminal domain ALFP_3448 PF04386 Stringent starvation protein B ALFP_3449 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3450 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3451 PF13531 Bacterial extracellular solute-binding protein ALFP_3452 PF00440 Bacterial regulatory proteins, tetR family ALFP_3453 PF12697 Alpha/beta hydrolase family ALFP_3454 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_3455 PF01180 Dihydroorotate dehydrogenase ALFP_3457 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_3458 PF13378 Enolase C-terminal domain-like ALFP_3459 PF00866 Ring hydroxylating beta subunit ALFP_3460 PF00355 Rieske [2Fe-2S] domain ALFP_3460 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_3462 PF01070 FMN-dependent dehydrogenase ALFP_3463 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALFP_3463 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_3464 PF07978 NIPSNAP ALFP_3465 PF06808 ALFP_3465 ALFP_3466 PF04290 ALFP_3466 ALFP_3467 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_3468 PF01370 NAD dependent epimerase/dehydratase family ALFP_3469 PF01261 Xylose isomerase-like TIM barrel ALFP_3470 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALFP_3470 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALFP_3471 PF00920 Dehydratase family ALFP_3472 PF00392 Bacterial regulatory proteins, gntR family ALFP_3472 PF07729 FCD domain ALFP_3473 PF01037 AsnC family ALFP_3473 PF13412 Winged helix-turn-helix DNA-binding ALFP_3475 PF03301 Tryptophan 2,3-dioxygenase ALFP_3476 PF07859 alpha/beta hydrolase fold ALFP_3477 PF01042 Endoribonuclease L-PSP ALFP_3478 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3478 PF03466 LysR substrate binding domain ALFP_3479 PF02548 Ketopantoate hydroxymethyltransferase ALFP_3480 PF00248 Aldo/keto reductase family ALFP_3481 PF07690 Major Facilitator Superfamily ALFP_3482 PF00330 Aconitase family (aconitate hydratase) ALFP_3482 PF00694 Aconitase C-terminal domain ALFP_3483 PF00990 GGDEF domain ALFP_3483 PF02743 Cache domain ALFP_3484 PF13649 Methyltransferase domain ALFP_3485 PF05013 N-formylglutamate amidohydrolase ALFP_3486 PF00795 Carbon-nitrogen hydrolase ALFP_3487 PF13354 Beta-lactamase enzyme family ALFP_3489 PF07969 Amidohydrolase family ALFP_3490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3490 PF03466 LysR substrate binding domain ALFP_3491 PF00083 Sugar (and other) transporter ALFP_3491 PF08946 Osmosensory transporter coiled coil ALFP_3492 PF13561 Enoyl-(Acyl carrier protein) reductase ALFP_3494 PF02678 Pirin ALFP_3494 PF05726 Pirin C-terminal cupin domain ALFP_3495 PF00857 Isochorismatase family ALFP_3496 PF02678 Pirin ALFP_3496 PF05726 Pirin C-terminal cupin domain ALFP_3497 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3497 PF03466 LysR substrate binding domain ALFP_3498 PF05532 CsbD-like ALFP_3499 PF04972 BON domain ALFP_3500 PF12680 SnoaL-like domain ALFP_3500 PF13738 Pyridine nucleotide-disulphide oxidoreductase ALFP_3501 PF00158 Sigma-54 interaction domain ALFP_3501 PF01590 GAF domain ALFP_3501 PF02954 Bacterial regulatory protein, Fis family ALFP_3502 PF07804 HipA-like C-terminal domain ALFP_3502 PF13657 HipA N-terminal domain ALFP_3505 PF00593 TonB dependent receptor ALFP_3506 PF07660 Secretin and TonB N terminus short domain ALFP_3506 PF07715 TonB-dependent Receptor Plug Domain ALFP_3508 PF04773 FecR protein ALFP_3508 PF16220 ALFP_3508 ALFP_3509 PF04542 Sigma-70 region 2 ALFP_3509 PF08281 Sigma-70, region 4 ALFP_3510 PF01380 SIS domain ALFP_3510 PF13522 Glutamine amidotransferase domain ALFP_3511 PF01037 AsnC family ALFP_3511 PF13412 Winged helix-turn-helix DNA-binding ALFP_3513 PF00534 Glycosyl transferases group 1 ALFP_3513 PF13439 Glycosyltransferase Family 4 ALFP_3514 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_3514 PF12804 MobA-like NTP transferase domain ALFP_3516 PF00293 NUDIX domain ALFP_3516 PF15916 ALFP_3516 ALFP_3517 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ALFP_3517 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ALFP_3517 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_3518 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_3520 PF11174 ALFP_3520 ALFP_3521 PF00510 Cytochrome c oxidase subunit III ALFP_3522 PF11137 ALFP_3522 ALFP_3523 PF02104 ALFP_3523 ALFP_3525 PF02628 ALFP_3525 ALFP_3526 PF01040 UbiA prenyltransferase family ALFP_3527 PF00027 Cyclic nucleotide-binding domain ALFP_3527 PF00999 Sodium/hydrogen exchanger family ALFP_3529 PF00593 TonB dependent receptor ALFP_3529 PF07715 TonB-dependent Receptor Plug Domain ALFP_3530 PF00140 Sigma-70 factor, region 1 ALFP_3530 PF04542 Sigma-70 region 2 ALFP_3530 PF04545 Sigma-70, region 4 ALFP_3531 PF00756 Putative esterase ALFP_3532 PF00107 Zinc-binding dehydrogenase ALFP_3532 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_3533 PF13091 PLD-like domain ALFP_3534 PF03372 Endonuclease/Exonuclease/phosphatase family ALFP_3535 PF00152 tRNA synthetases class II (D, K and N) ALFP_3535 PF01336 OB-fold nucleic acid binding domain ALFP_3535 PF02938 GAD domain ALFP_3536 PF04367 ALFP_3536 ALFP_3537 PF07399 ALFP_3537 ALFP_3538 PF01040 UbiA prenyltransferase family ALFP_3539 PF00155 Aminotransferase class I and II ALFP_3540 PF05962 HutD ALFP_3541 PF07969 Amidohydrolase family ALFP_3542 PF01979 Amidohydrolase family ALFP_3543 PF00221 Aromatic amino acid lyase ALFP_3544 PF01175 Urocanase ALFP_3544 PF17391 ALFP_3544 ALFP_3544 PF17392 ALFP_3544 ALFP_3545 PF00392 Bacterial regulatory proteins, gntR family ALFP_3545 PF07702 UTRA domain ALFP_3546 PF12833 Helix-turn-helix domain ALFP_3547 PF13302 Acetyltransferase (GNAT) domain ALFP_3548 PF00797 N-acetyltransferase ALFP_3549 PF00085 Thioredoxin ALFP_3550 PF07690 Major Facilitator Superfamily ALFP_3551 PF11158 ALFP_3551 ALFP_3552 PF13411 MerR HTH family regulatory protein ALFP_3553 PF07690 Major Facilitator Superfamily ALFP_3554 PF13560 Helix-turn-helix domain ALFP_3555 PF07804 HipA-like C-terminal domain ALFP_3555 PF13657 HipA N-terminal domain ALFP_3556 PF00583 Acetyltransferase (GNAT) family ALFP_3557 PF00296 Luciferase-like monooxygenase ALFP_3558 PF00043 Glutathione S-transferase, C-terminal domain ALFP_3558 PF02798 Glutathione S-transferase, N-terminal domain ALFP_3559 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3559 PF03466 LysR substrate binding domain ALFP_3560 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_3560 PF00175 Oxidoreductase NAD-binding domain ALFP_3560 PF00970 Oxidoreductase FAD-binding domain ALFP_3561 PF00355 Rieske [2Fe-2S] domain ALFP_3562 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_3562 PF03466 LysR substrate binding domain ALFP_3563 PF00155 Aminotransferase class I and II ALFP_3565 PF13350 Tyrosine phosphatase family ALFP_3566 PF12706 Beta-lactamase superfamily domain ALFP_3568 PF01784 NIF3 (NGG1p interacting factor 3) ALFP_3570 PF02423 Ornithine cyclodeaminase/mu-crystallin family ALFP_3571 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_3573 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_3575 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_3575 PF00175 Oxidoreductase NAD-binding domain ALFP_3575 PF00970 Oxidoreductase FAD-binding domain ALFP_3576 PF03928 Domain of unknown function (DUF336) ALFP_3577 PF00171 Aldehyde dehydrogenase family ALFP_3578 PF14518 Iron-containing redox enzyme ALFP_3579 PF01019 Gamma-glutamyltranspeptidase ALFP_3581 PF01925 ALFP_3581 ALFP_3582 PF00392 Bacterial regulatory proteins, gntR family ALFP_3582 PF07729 FCD domain ALFP_3583 PF00440 Bacterial regulatory proteins, tetR family ALFP_3584 PF07690 Major Facilitator Superfamily ALFP_3585 PF00210 Ferritin-like domain ALFP_3587 PF07690 Major Facilitator Superfamily ALFP_3588 PF01042 Endoribonuclease L-PSP ALFP_3589 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_3590 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALFP_3591 PF00392 Bacterial regulatory proteins, gntR family ALFP_3591 PF07729 FCD domain ALFP_3592 PF00436 Single-strand binding protein family ALFP_3593 PF07690 Major Facilitator Superfamily ALFP_3595 PF01966 HD domain ALFP_3595 PF13286 Phosphohydrolase-associated domain ALFP_3596 PF01761 3-dehydroquinate synthase ALFP_3597 PF01202 Shikimate kinase ALFP_3598 PF00905 Penicillin binding protein transpeptidase domain ALFP_3598 PF00912 Transglycosylase ALFP_3598 PF17092 ALFP_3598 ALFP_3599 PF13627 ALFP_3599 ALFP_3600 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ALFP_3600 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ALFP_3601 PF00563 EAL domain ALFP_3601 PF00990 GGDEF domain ALFP_3602 PF01548 ALFP_3602 ALFP_3602 PF02371 ALFP_3602 ALFP_3603 PF01578 ALFP_3603 ALFP_3604 PF05140 ALFP_3604 ALFP_3605 PF00034 Cytochrome c ALFP_3606 PF01926 50S ribosome-binding GTPase ALFP_3607 PF00490 Delta-aminolevulinic acid dehydratase ALFP_3608 PF02683 ALFP_3608 ALFP_3608 PF11412 Disulphide bond corrector protein DsbC ALFP_3608 PF13899 Thioredoxin-like ALFP_3609 PF03091 CutA1 divalent ion tolerance protein ALFP_3610 PF12833 Helix-turn-helix domain ALFP_3610 PF14525 ALFP_3610 ALFP_3611 PF01613 Flavin reductase like domain ALFP_3612 PF00296 Luciferase-like monooxygenase ALFP_3613 PF01196 Ribosomal protein L17 ALFP_3614 PF01000 RNA polymerase Rpb3/RpoA insert domain ALFP_3614 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ALFP_3614 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ALFP_3615 PF00163 Ribosomal protein S4/S9 N-terminal domain ALFP_3615 PF01479 S4 domain ALFP_3616 PF00411 Ribosomal protein S11 ALFP_3617 PF00416 Ribosomal protein S13/S18 ALFP_3618 PF01176 Translation initiation factor 1A / IF-1 ALFP_3619 PF00344 SecY translocase ALFP_3620 PF00828 Ribosomal protein L18e/L15 ALFP_3621 PF00327 Ribosomal protein L30p/L7e ALFP_3622 PF00333 Ribosomal protein S5, N-terminal domain ALFP_3622 PF03719 Ribosomal protein S5, C-terminal domain ALFP_3623 PF00861 Ribosomal L18p/L5e family ALFP_3624 PF00347 Ribosomal protein L6 ALFP_3625 PF00410 Ribosomal protein S8 ALFP_3626 PF00253 Ribosomal protein S14p/S29e ALFP_3627 PF00281 Ribosomal protein L5 ALFP_3627 PF00673 ribosomal L5P family C-terminus ALFP_3628 PF17136 ALFP_3628 ALFP_3629 PF00238 Ribosomal protein L14p/L23e ALFP_3630 PF00563 EAL domain ALFP_3630 PF00990 GGDEF domain ALFP_3630 PF16448 ALFP_3630 ALFP_3631 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP ALFP_3632 PF13519 von Willebrand factor type A domain ALFP_3633 PF00196 Bacterial regulatory proteins, luxR family ALFP_3634 PF13437 HlyD family secretion protein ALFP_3634 PF13533 Biotin-lipoyl like ALFP_3635 PF00005 ABC transporter ALFP_3635 PF00664 ABC transporter transmembrane region ALFP_3637 PF02321 Outer membrane efflux protein ALFP_3638 PF00171 Aldehyde dehydrogenase family ALFP_3639 PF00440 Bacterial regulatory proteins, tetR family ALFP_3640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_3640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_3640 PF09317 ALFP_3640 ALFP_3641 PF00108 Thiolase, N-terminal domain ALFP_3641 PF02803 Thiolase, C-terminal domain ALFP_3642 PF00378 Enoyl-CoA hydratase/isomerase family ALFP_3642 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALFP_3642 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALFP_3643 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ALFP_3644 PF14539 Domain of unknown function (DUF4442) ALFP_3645 PF16036 ALFP_3645 ALFP_3646 PF00501 AMP-binding enzyme ALFP_3646 PF13193 AMP-binding enzyme C-terminal domain ALFP_3647 PF00175 Oxidoreductase NAD-binding domain ALFP_3647 PF00258 Flavodoxin ALFP_3647 PF00667 FAD binding domain ALFP_3648 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ALFP_3648 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ALFP_3649 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALFP_3649 PF10414 Sirohaem synthase dimerisation region ALFP_3649 PF13241 Putative NAD(P)-binding ALFP_3649 PF14824 Sirohaem biosynthesis protein central ALFP_3650 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3651 PF13379 NMT1-like family ALFP_3652 PF00005 ABC transporter ALFP_3654 PF02627 Carboxymuconolactone decarboxylase family ALFP_3655 PF12833 Helix-turn-helix domain ALFP_3655 PF12852 Cupin ALFP_3656 PF00366 Ribosomal protein S17 ALFP_3657 PF00831 Ribosomal L29 protein ALFP_3658 PF00252 Ribosomal protein L16p/L10e ALFP_3659 PF00189 Ribosomal protein S3, C-terminal domain ALFP_3659 PF07650 KH domain ALFP_3660 PF00237 Ribosomal protein L22p/L17e ALFP_3661 PF00203 Ribosomal protein S19 ALFP_3662 PF00181 Ribosomal Proteins L2, RNA binding domain ALFP_3662 PF03947 Ribosomal Proteins L2, C-terminal domain ALFP_3663 PF00276 Ribosomal protein L23 ALFP_3664 PF00573 Ribosomal protein L4/L1 family ALFP_3665 PF00297 Ribosomal protein L3 ALFP_3667 PF00005 ABC transporter ALFP_3668 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_3668 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ALFP_3669 PF00338 Ribosomal protein S10p/S20e ALFP_3670 PF00009 Elongation factor Tu GTP binding domain ALFP_3670 PF03143 Elongation factor Tu C-terminal domain ALFP_3670 PF03144 Elongation factor Tu domain 2 ALFP_3671 PF00009 Elongation factor Tu GTP binding domain ALFP_3671 PF00679 Elongation factor G C-terminus ALFP_3671 PF03144 Elongation factor Tu domain 2 ALFP_3671 PF03764 Elongation factor G, domain IV ALFP_3671 PF14492 Elongation Factor G, domain II ALFP_3672 PF00177 Ribosomal protein S7p/S5e ALFP_3673 PF00164 Ribosomal protein S12/S23 ALFP_3674 PF00072 Response regulator receiver domain ALFP_3674 PF00486 Transcriptional regulatory protein, C terminal ALFP_3675 PF01476 LysM domain ALFP_3675 PF04773 FecR protein ALFP_3676 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_3676 PF05226 ALFP_3676 ALFP_3677 PF02311 AraC-like ligand binding domain ALFP_3677 PF12833 Helix-turn-helix domain ALFP_3678 PF01810 ALFP_3678 ALFP_3679 PF00127 Copper binding proteins, plastocyanin/azurin family ALFP_3680 PF00623 RNA polymerase Rpb1, domain 2 ALFP_3680 PF04983 RNA polymerase Rpb1, domain 3 ALFP_3680 PF04997 RNA polymerase Rpb1, domain 1 ALFP_3680 PF04998 RNA polymerase Rpb1, domain 5 ALFP_3680 PF05000 RNA polymerase Rpb1, domain 4 ALFP_3681 PF00562 RNA polymerase Rpb2, domain 6 ALFP_3681 PF04560 RNA polymerase Rpb2, domain 7 ALFP_3681 PF04561 RNA polymerase Rpb2, domain 2 ALFP_3681 PF04563 RNA polymerase beta subunit ALFP_3681 PF04565 RNA polymerase Rpb2, domain 3 ALFP_3681 PF10385 RNA polymerase beta subunit external 1 domain ALFP_3682 PF00542 Ribosomal protein L7/L12 C-terminal domain ALFP_3682 PF16320 ALFP_3682 ALFP_3683 PF00466 Ribosomal protein L10 ALFP_3684 PF00687 Ribosomal protein L1p/L10e family ALFP_3685 PF00298 Ribosomal protein L11, RNA binding domain ALFP_3685 PF03946 Ribosomal protein L11, N-terminal domain ALFP_3686 PF00467 KOW motif ALFP_3686 PF02357 Transcription termination factor nusG ALFP_3687 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ALFP_3688 PF00009 Elongation factor Tu GTP binding domain ALFP_3688 PF03143 Elongation factor Tu C-terminal domain ALFP_3688 PF03144 Elongation factor Tu domain 2 ALFP_3690 PF02195 ParB-like nuclease domain ALFP_3691 PF13614 AAA domain ALFP_3692 PF02527 rRNA small subunit methyltransferase G ALFP_3693 PF01134 Glucose inhibited division protein A ALFP_3693 PF13932 GidA associated domain 3 ALFP_3694 PF00155 Aminotransferase class I and II ALFP_3697 PF00990 GGDEF domain ALFP_3697 PF11563 Protoglobin ALFP_3698 PF02666 ALFP_3698 ALFP_3699 PF13387 ALFP_3699 ALFP_3700 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_3702 PF02567 Phenazine biosynthesis-like protein ALFP_3704 PF04773 FecR protein ALFP_3704 PF16220 ALFP_3704 ALFP_3705 PF03797 Autotransporter beta-domain ALFP_3708 PF02498 ALFP_3708 ALFP_3709 PF01926 50S ribosome-binding GTPase ALFP_3709 PF10396 GTP-binding protein TrmE N-terminus ALFP_3709 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE ALFP_3711 PF07883 Cupin domain ALFP_3711 PF13560 Helix-turn-helix domain ALFP_3712 PF01546 Peptidase family M20/M25/M40 ALFP_3712 PF07687 Peptidase dimerisation domain ALFP_3713 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_3714 PF02423 Ornithine cyclodeaminase/mu-crystallin family ALFP_3715 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_3716 PF13458 Periplasmic binding protein ALFP_3717 PF02653 ALFP_3717 ALFP_3718 PF02653 ALFP_3718 ALFP_3719 PF00005 ABC transporter ALFP_3719 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_3720 PF00005 ABC transporter ALFP_3721 PF12697 Alpha/beta hydrolase family ALFP_3723 PF00857 Isochorismatase family ALFP_3724 PF01494 FAD binding domain ALFP_3725 PF09995 ALFP_3725 ALFP_3726 PF00440 Bacterial regulatory proteins, tetR family ALFP_3727 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_3728 PF00199 Catalase ALFP_3728 PF06628 Catalase-related immune-responsive ALFP_3729 PF02096 60Kd inner membrane protein ALFP_3729 PF14849 YidC periplasmic domain ALFP_3730 PF01809 ALFP_3730 ALFP_3731 PF00825 Ribonuclease P ALFP_3732 PF00468 Ribosomal protein L34