ALFP_0001 SM00382 ATPases associated with a variety of cellular activities ALFP_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain ALFP_0002 SM00480 DNA polymerase III beta subunit ALFP_0003 SM00387 Histidine kinase-like ATPases ALFP_0003 SM00433 TopoisomeraseII ALFP_0004 SM00363 S4 RNA-binding domain ALFP_0013 SM01130 ALFP_0013 ALFP_0015 SM00530 Helix-turn-helix XRE-family like proteins ALFP_0023 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_0025 SM00829 Enoylreductase ALFP_0027 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_0027 SM00895 ALFP_0027 ALFP_0035 SM01007 Class II Aldolase and Adducin N-terminal domain ALFP_0040 SM00382 ATPases associated with a variety of cellular activities ALFP_0044 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_0044 SM00866 ALFP_0044 ALFP_0048 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_0048 SM00895 ALFP_0048 ALFP_0053 SM00382 ATPases associated with a variety of cellular activities ALFP_0057 SM00833 Cobalamin synthesis protein cobW C-terminal domain ALFP_0065 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_0068 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_0090 SM00903 Flavin reductase like domain ALFP_0092 SM00342 helix_turn_helix, arabinose operon control protein ALFP_0093 SM00903 Flavin reductase like domain ALFP_0094 SM00382 ATPases associated with a variety of cellular activities ALFP_0097 SM00965 Secretin and TonB N terminus short domain ALFP_0100 SM00382 ATPases associated with a variety of cellular activities ALFP_0101 SM00382 ATPases associated with a variety of cellular activities ALFP_0112 SM00342 helix_turn_helix, arabinose operon control protein ALFP_0126 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain ALFP_0132 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain ALFP_0132 SM00437 Bacterial DNA topoisomerase I DNA-binding domain ALFP_0132 SM00493 ALFP_0132 ALFP_0136 SM00878 Biotin carboxylase C-terminal domain ALFP_0136 SM01209 ALFP_0136 ALFP_0141 SM00422 helix_turn_helix, mercury resistance ALFP_0142 SM00849 Metallo-beta-lactamase superfamily ALFP_0146 SM00836 DALR anticodon binding domain ALFP_0146 SM01016 Arginyl tRNA synthetase N terminal dom ALFP_0151 SM00917 LeuA allosteric (dimerisation) domain ALFP_0169 SM00487 DEAD-like helicases superfamily ALFP_0169 SM00490 helicase superfamily c-terminal domain ALFP_0188 SM00382 ATPases associated with a variety of cellular activities ALFP_0201 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_0201 SM00895 ALFP_0201 ALFP_0208 SM00052 Putative diguanylate phosphodiesterase ALFP_0208 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_0208 SM00267 diguanylate cyclase ALFP_0214 SM00870 ALFP_0214 ALFP_0217 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_0218 SM00382 ATPases associated with a variety of cellular activities ALFP_0219 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALFP_0222 SM00100 Cyclic nucleotide-monophosphate binding domain ALFP_0224 SM00382 ATPases associated with a variety of cellular activities ALFP_0228 SM00382 ATPases associated with a variety of cellular activities ALFP_0230 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_0246 SM00357 Cold shock protein domain ALFP_0252 SM00936 Penicillin-binding protein 5, C-terminal domain ALFP_0257 SM00729 Elongator protein 3, MiaB family, Radical SAM ALFP_0259 SM00986 Uracil DNA glycosylase superfamily ALFP_0259 SM00987 UreE urease accessory protein, C-terminal domain ALFP_0260 SM00100 Cyclic nucleotide-monophosphate binding domain ALFP_0260 SM00419 helix_turn_helix, cAMP Regulatory protein ALFP_0275 SM00052 Putative diguanylate phosphodiesterase ALFP_0275 SM00267 diguanylate cyclase ALFP_0278 SM00925 MltA specific insert domain ALFP_0281 SM00052 Putative diguanylate phosphodiesterase ALFP_0281 SM00862 Transcriptional regulatory protein, C terminal ALFP_0282 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ALFP_0282 SM01049 ALFP_0282 ALFP_0284 SM00822 ALFP_0284 ALFP_0289 SM00823 Phosphopantetheine attachment site ALFP_0293 SM00382 ATPases associated with a variety of cellular activities ALFP_0294 SM00382 ATPases associated with a variety of cellular activities ALFP_0298 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_0301 SM00382 ATPases associated with a variety of cellular activities ALFP_0307 SM00382 ATPases associated with a variety of cellular activities ALFP_0310 SM00490 helicase superfamily c-terminal domain ALFP_0315 SM01091 Transporter associated domain ALFP_0331 SM00903 Flavin reductase like domain ALFP_0336 SM00382 ATPases associated with a variety of cellular activities ALFP_0339 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_0339 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. ALFP_0340 SM00382 ATPases associated with a variety of cellular activities ALFP_0343 SM01130 ALFP_0343 ALFP_0354 SM00342 helix_turn_helix, arabinose operon control protein ALFP_0357 SM00487 DEAD-like helicases superfamily ALFP_0357 SM00490 helicase superfamily c-terminal domain ALFP_0385 SM00448 cheY-homologous receiver domain ALFP_0387 SM00862 Transcriptional regulatory protein, C terminal ALFP_0402 SM00382 ATPases associated with a variety of cellular activities ALFP_0402 SM01086 C-terminal, D2-small domain, of ClpB protein ALFP_0405 SM00833 Cobalamin synthesis protein cobW C-terminal domain ALFP_0407 SM00382 ATPases associated with a variety of cellular activities ALFP_0416 SM00996 S-adenosyl-L-homocysteine hydrolase ALFP_0416 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ALFP_0429 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_0451 SM00487 DEAD-like helicases superfamily ALFP_0451 SM00490 helicase superfamily c-terminal domain ALFP_0462 SM00822 ALFP_0462 ALFP_0463 SM00342 helix_turn_helix, arabinose operon control protein ALFP_0481 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_0486 SM00382 ATPases associated with a variety of cellular activities ALFP_0489 SM00382 ATPases associated with a variety of cellular activities ALFP_0490 SM00382 ATPases associated with a variety of cellular activities ALFP_0494 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_0494 SM00895 ALFP_0494 ALFP_0498 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_0498 SM00866 ALFP_0498 ALFP_0499 SM00344 helix_turn_helix ASNC type ALFP_0508 SM00420 helix_turn_helix, Deoxyribose operon repressor ALFP_0508 SM01134 ALFP_0508 ALFP_0509 SM00382 ATPases associated with a variety of cellular activities ALFP_0514 SM00965 Secretin and TonB N terminus short domain ALFP_0522 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ALFP_0524 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ALFP_0525 SM00363 S4 RNA-binding domain ALFP_0532 SM00342 helix_turn_helix, arabinose operon control protein ALFP_0536 SM00387 Histidine kinase-like ATPases ALFP_0538 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. ALFP_0540 SM00644 ALFP_0540 ALFP_0543 SM00382 ATPases associated with a variety of cellular activities ALFP_0543 SM00962 SRP54-type protein, GTPase domain ALFP_0543 SM00963 SRP54-type protein, helical bundle domain ALFP_0544 SM00257 Lysin motif ALFP_0553 SM00342 helix_turn_helix, arabinose operon control protein ALFP_0555 SM00530 Helix-turn-helix XRE-family like proteins ALFP_0559 SM00342 helix_turn_helix, arabinose operon control protein ALFP_0559 SM00448 cheY-homologous receiver domain ALFP_0562 SM01007 Class II Aldolase and Adducin N-terminal domain ALFP_0597 SM01007 Class II Aldolase and Adducin N-terminal domain ALFP_0602 SM00984 UDP binding domain ALFP_0615 SM00849 Metallo-beta-lactamase superfamily ALFP_0616 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain ALFP_0616 SM01232 ALFP_0616 ALFP_0617 SM00028 Tetratricopeptide repeats ALFP_0620 SM01400 ALFP_0620 ALFP_0627 SM00530 Helix-turn-helix XRE-family like proteins ALFP_0628 SM00342 helix_turn_helix, arabinose operon control protein ALFP_0631 SM00382 ATPases associated with a variety of cellular activities ALFP_0633 SM00869 Autotransporter beta-domain ALFP_0634 SM00947 Carbonic anhydrase ALFP_0645 SM00028 Tetratricopeptide repeats ALFP_0647 SM00822 ALFP_0647 ALFP_0648 SM00342 helix_turn_helix, arabinose operon control protein ALFP_0654 SM00382 ATPases associated with a variety of cellular activities ALFP_0655 SM00382 ATPases associated with a variety of cellular activities ALFP_0669 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ALFP_0669 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ALFP_0670 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ALFP_0673 SM00729 Elongator protein 3, MiaB family, Radical SAM ALFP_0675 SM00852 Probable molybdopterin binding domain ALFP_0676 SM00852 Probable molybdopterin binding domain ALFP_0680 SM00421 helix_turn_helix, Lux Regulon ALFP_0680 SM00448 cheY-homologous receiver domain ALFP_0681 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ALFP_0681 SM00091 PAS domain ALFP_0681 SM00387 Histidine kinase-like ATPases ALFP_0681 SM00388 His Kinase A (phosphoacceptor) domain ALFP_0689 SM00729 Elongator protein 3, MiaB family, Radical SAM ALFP_0689 SM00876 Biotin and Thiamin Synthesis associated domain ALFP_0699 SM00052 Putative diguanylate phosphodiesterase ALFP_0699 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ALFP_0699 SM00091 PAS domain ALFP_0699 SM00267 diguanylate cyclase ALFP_0701 SM01091 Transporter associated domain ALFP_0704 SM00729 Elongator protein 3, MiaB family, Radical SAM ALFP_0709 SM01323 ALFP_0709 ALFP_0734 SM00919 Malic enzyme, NAD binding domain ALFP_0734 SM01274 ALFP_0734 ALFP_0738 SM00861 Transketolase, pyrimidine binding domain ALFP_0739 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALFP_0745 SM00852 Probable molybdopterin binding domain ALFP_0748 SM01001 AIR carboxylase ALFP_0758 SM00903 Flavin reductase like domain ALFP_0764 SM00382 ATPases associated with a variety of cellular activities ALFP_0768 SM00382 ATPases associated with a variety of cellular activities ALFP_0778 SM00116 Domain in cystathionine beta-synthase and other proteins. ALFP_0780 SM00341 Helicase and RNase D C-terminal ALFP_0780 SM00487 DEAD-like helicases superfamily ALFP_0780 SM00490 helicase superfamily c-terminal domain ALFP_0780 SM00956 ALFP_0780 ALFP_0784 SM00382 ATPases associated with a variety of cellular activities ALFP_0797 SM00842 Cell division protein FtsA ALFP_0798 SM00864 Tubulin/FtsZ family, GTPase domain ALFP_0798 SM00865 Tubulin/FtsZ family, C-terminal domain ALFP_0802 SM00957 SecA DEAD-like domain ALFP_0802 SM00958 SecA preprotein cross-linking domain ALFP_0804 SM00116 Domain in cystathionine beta-synthase and other proteins. ALFP_0804 SM00924 MgtE intracellular N domain ALFP_0811 SM00382 ATPases associated with a variety of cellular activities ALFP_0811 SM00930 ALFP_0811 ALFP_0814 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_0814 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. ALFP_0816 SM00382 ATPases associated with a variety of cellular activities ALFP_0822 SM00650 Ribosomal RNA adenine dimethylases ALFP_0826 SM00563 Phosphate acyltransferases ALFP_0828 SM00836 DALR anticodon binding domain ALFP_0837 SM00729 Elongator protein 3, MiaB family, Radical SAM ALFP_0838 SM00986 Uracil DNA glycosylase superfamily ALFP_0838 SM00987 UreE urease accessory protein, C-terminal domain ALFP_0846 SM00853 MutL C terminal dimerisation domain ALFP_0846 SM01340 ALFP_0846 ALFP_0848 SM00646 ALFP_0848 ALFP_0852 SM00919 Malic enzyme, NAD binding domain ALFP_0852 SM01274 ALFP_0852 ALFP_0855 SM01130 ALFP_0855 ALFP_0856 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_0856 SM00895 ALFP_0856 ALFP_0873 SM00382 ATPases associated with a variety of cellular activities ALFP_0877 SM00382 ATPases associated with a variety of cellular activities ALFP_0879 SM00493 ALFP_0879 ALFP_0880 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_0881 SM00382 ATPases associated with a variety of cellular activities ALFP_0885 SM00965 Secretin and TonB N terminus short domain ALFP_0888 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain ALFP_0889 SM00851 MGS-like domain ALFP_0889 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ALFP_0891 SM00822 ALFP_0891 ALFP_0892 SM00855 Phosphoglycerate mutase family ALFP_0895 SM01103 ALFP_0895 ALFP_0897 SM00382 ATPases associated with a variety of cellular activities ALFP_0906 SM00382 ATPases associated with a variety of cellular activities ALFP_0910 SM00448 cheY-homologous receiver domain ALFP_0910 SM00862 Transcriptional regulatory protein, C terminal ALFP_0911 SM00387 Histidine kinase-like ATPases ALFP_0913 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_0927 SM00155 Phospholipase D. Active site motifs. ALFP_0931 SM01130 ALFP_0931 ALFP_0939 SM00507 HNH nucleases ALFP_0942 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. ALFP_0943 SM00533 DNA-binding domain of DNA mismatch repair MUTS family ALFP_0943 SM00534 ATPase domain of DNA mismatch repair MUTS family ALFP_0948 SM00382 ATPases associated with a variety of cellular activities ALFP_0951 SM00382 ATPases associated with a variety of cellular activities ALFP_0959 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ALFP_0967 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_0970 SM01091 Transporter associated domain ALFP_0976 SM00028 Tetratricopeptide repeats ALFP_0977 SM00840 ALFP_0977 ALFP_0978 SM00478 endonuclease III ALFP_0984 SM00244 prohibitin homologues ALFP_0986 SM00342 helix_turn_helix, arabinose operon control protein ALFP_0992 SM00382 ATPases associated with a variety of cellular activities ALFP_0993 SM01002 Alanine dehydrogenase/PNT, C-terminal domain ALFP_0993 SM01003 Alanine dehydrogenase/PNT, N-terminal domain ALFP_1009 SM00318 Staphylococcal nuclease homologues ALFP_1013 SM00382 ATPases associated with a variety of cellular activities ALFP_1015 SM00382 ATPases associated with a variety of cellular activities ALFP_1019 SM00841 Elongation factor P, C-terminal ALFP_1019 SM01185 ALFP_1019 ALFP_1031 SM00091 PAS domain ALFP_1031 SM00382 ATPases associated with a variety of cellular activities ALFP_1033 SM00530 Helix-turn-helix XRE-family like proteins ALFP_1035 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_1035 SM00866 ALFP_1035 ALFP_1042 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_1042 SM00895 ALFP_1042 ALFP_1044 SM00919 Malic enzyme, NAD binding domain ALFP_1044 SM01274 ALFP_1044 ALFP_1046 SM00861 Transketolase, pyrimidine binding domain ALFP_1053 SM00316 Ribosomal protein S1-like RNA-binding domain ALFP_1053 SM00732 Likely ribonuclease with RNase H fold. ALFP_1054 SM00487 DEAD-like helicases superfamily ALFP_1054 SM00491 ALFP_1054 ALFP_1065 SM00363 S4 RNA-binding domain ALFP_1068 SM00822 ALFP_1068 ALFP_1073 SM00363 S4 RNA-binding domain ALFP_1075 SM00316 Ribosomal protein S1-like RNA-binding domain ALFP_1075 SM00322 K homology RNA-binding domain ALFP_1079 SM00838 Elongation factor G C-terminus ALFP_1084 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_1086 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs ALFP_1086 SM00474 3'-5' exonuclease ALFP_1086 SM00475 5'-3' exonuclease ALFP_1086 SM00482 DNA polymerase A domain ALFP_1088 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_1095 SM00450 Rhodanese Homology Domain ALFP_1098 SM00861 Transketolase, pyrimidine binding domain ALFP_1104 SM00382 ATPases associated with a variety of cellular activities ALFP_1107 SM00670 Large family of predicted nucleotide-binding domains ALFP_1117 SM01005 Alanine racemase, C-terminal domain ALFP_1119 SM00382 ATPases associated with a variety of cellular activities ALFP_1123 SM00382 ATPases associated with a variety of cellular activities ALFP_1129 SM00052 Putative diguanylate phosphodiesterase ALFP_1134 SM00382 ATPases associated with a variety of cellular activities ALFP_1134 SM00487 DEAD-like helicases superfamily ALFP_1134 SM00490 helicase superfamily c-terminal domain ALFP_1134 SM00847 Helicase associated domain (HA2) Add an annotation ALFP_1135 SM00481 DNA polymerase alpha chain like domain ALFP_1146 SM00382 ATPases associated with a variety of cellular activities ALFP_1149 SM00316 Ribosomal protein S1-like RNA-binding domain ALFP_1151 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_1151 SM00895 ALFP_1151 ALFP_1167 SM00849 Metallo-beta-lactamase superfamily ALFP_1168 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ALFP_1171 SM00422 helix_turn_helix, mercury resistance ALFP_1185 SM00073 Histidine Phosphotransfer domain ALFP_1185 SM00260 Two component signalling adaptor domain ALFP_1185 SM00387 Histidine kinase-like ATPases ALFP_1185 SM01231 ALFP_1185 ALFP_1186 SM00260 Two component signalling adaptor domain ALFP_1187 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ALFP_1187 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_1188 SM00138 Methyltransferase, chemotaxis proteins ALFP_1189 SM00448 cheY-homologous receiver domain ALFP_1190 SM00448 cheY-homologous receiver domain ALFP_1194 SM00382 ATPases associated with a variety of cellular activities ALFP_1194 SM00962 SRP54-type protein, GTPase domain ALFP_1196 SM00530 Helix-turn-helix XRE-family like proteins ALFP_1200 SM00858 ALFP_1200 ALFP_1209 SM00047 Lysozyme subfamily 2 ALFP_1212 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ALFP_1212 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_1214 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ALFP_1214 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_1215 SM00116 Domain in cystathionine beta-synthase and other proteins. ALFP_1216 SM00479 ALFP_1216 ALFP_1226 SM00382 ATPases associated with a variety of cellular activities ALFP_1239 SM00028 Tetratricopeptide repeats ALFP_1247 SM00382 ATPases associated with a variety of cellular activities ALFP_1254 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ALFP_1255 SM00091 PAS domain ALFP_1255 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ALFP_1255 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_1270 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_1271 SM00382 ATPases associated with a variety of cellular activities ALFP_1275 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_1285 SM00450 Rhodanese Homology Domain ALFP_1302 SM00357 Cold shock protein domain ALFP_1303 SM00387 Histidine kinase-like ATPases ALFP_1303 SM00388 His Kinase A (phosphoacceptor) domain ALFP_1304 SM00448 cheY-homologous receiver domain ALFP_1304 SM00862 Transcriptional regulatory protein, C terminal ALFP_1314 SM00965 Secretin and TonB N terminus short domain ALFP_1334 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_1337 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_1337 SM00895 ALFP_1337 ALFP_1339 SM00342 helix_turn_helix, arabinose operon control protein ALFP_1351 SM00530 Helix-turn-helix XRE-family like proteins ALFP_1352 SM00448 cheY-homologous receiver domain ALFP_1352 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ALFP_1353 SM00091 PAS domain ALFP_1353 SM00387 Histidine kinase-like ATPases ALFP_1353 SM00388 His Kinase A (phosphoacceptor) domain ALFP_1353 SM00448 cheY-homologous receiver domain ALFP_1354 SM00116 Domain in cystathionine beta-synthase and other proteins. ALFP_1354 SM00924 MgtE intracellular N domain ALFP_1374 SM00479 ALFP_1374 ALFP_1375 SM00267 diguanylate cyclase ALFP_1378 SM00344 helix_turn_helix ASNC type ALFP_1386 SM00382 ATPases associated with a variety of cellular activities ALFP_1390 SM00354 helix_turn _helix lactose operon repressor ALFP_1396 SM00387 Histidine kinase-like ATPases ALFP_1396 SM00388 His Kinase A (phosphoacceptor) domain ALFP_1397 SM00448 cheY-homologous receiver domain ALFP_1397 SM00862 Transcriptional regulatory protein, C terminal ALFP_1415 SM00357 Cold shock protein domain ALFP_1417 SM00382 ATPases associated with a variety of cellular activities ALFP_1417 SM01086 C-terminal, D2-small domain, of ClpB protein ALFP_1426 SM00382 ATPases associated with a variety of cellular activities ALFP_1427 SM00382 ATPases associated with a variety of cellular activities ALFP_1437 SM00904 Riboflavin kinase ALFP_1452 SM00382 ATPases associated with a variety of cellular activities ALFP_1457 SM00342 helix_turn_helix, arabinose operon control protein ALFP_1463 SM00477 DNA/RNA non-specific endonuclease ALFP_1463 SM00892 DNA/RNA non-specific endonuclease ALFP_1468 SM00422 helix_turn_helix, mercury resistance ALFP_1473 SM00382 ATPases associated with a variety of cellular activities ALFP_1473 SM00994 ClpX C4-type zinc finger ALFP_1473 SM01086 C-terminal, D2-small domain, of ClpB protein ALFP_1474 SM00382 ATPases associated with a variety of cellular activities ALFP_1474 SM00464 Found in ATP-dependent protease La (LON) ALFP_1479 SM00487 DEAD-like helicases superfamily ALFP_1479 SM00490 helicase superfamily c-terminal domain ALFP_1480 SM00226 Low molecular weight phosphatase family ALFP_1491 SM00937 ALFP_1491 ALFP_1492 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ALFP_1492 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_1500 SM00382 ATPases associated with a variety of cellular activities ALFP_1502 SM00849 Metallo-beta-lactamase superfamily ALFP_1504 SM00481 DNA polymerase alpha chain like domain ALFP_1506 SM01211 ALFP_1506 ALFP_1507 SM00116 Domain in cystathionine beta-synthase and other proteins. ALFP_1507 SM01240 ALFP_1507 ALFP_1510 SM00342 helix_turn_helix, arabinose operon control protein ALFP_1538 SM00833 Cobalamin synthesis protein cobW C-terminal domain ALFP_1547 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_1547 SM00387 Histidine kinase-like ATPases ALFP_1547 SM00388 His Kinase A (phosphoacceptor) domain ALFP_1548 SM00448 cheY-homologous receiver domain ALFP_1548 SM00862 Transcriptional regulatory protein, C terminal ALFP_1564 SM00342 helix_turn_helix, arabinose operon control protein ALFP_1581 SM00342 helix_turn_helix, arabinose operon control protein ALFP_1584 SM00450 Rhodanese Homology Domain ALFP_1585 SM00232 JAB/MPN domain ALFP_1594 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ALFP_1598 SM00342 helix_turn_helix, arabinose operon control protein ALFP_1599 SM00917 LeuA allosteric (dimerisation) domain ALFP_1600 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_1603 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ALFP_1605 SM00882 Coenzyme A transferase ALFP_1606 SM00882 Coenzyme A transferase ALFP_1615 SM00421 helix_turn_helix, Lux Regulon ALFP_1622 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_1627 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_1629 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_1630 SM00990 ALFP_1630 ALFP_1631 SM00488 ALFP_1631 ALFP_1631 SM00491 ALFP_1631 ALFP_1640 SM00342 helix_turn_helix, arabinose operon control protein ALFP_1644 SM00749 bacterial OsmY and nodulation domain ALFP_1654 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_1657 SM00382 ATPases associated with a variety of cellular activities ALFP_1662 SM00382 ATPases associated with a variety of cellular activities ALFP_1662 SM00989 ALFP_1662 ALFP_1685 SM00244 prohibitin homologues ALFP_1696 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ALFP_1706 SM00382 ATPases associated with a variety of cellular activities ALFP_1710 SM00873 B3/4 domain ALFP_1710 SM00874 tRNA synthetase B5 domain ALFP_1710 SM00896 Ferredoxin-fold anticodon binding domain ALFP_1711 SM00411 bacterial (prokaryotic) histone like domain ALFP_1712 SM00422 helix_turn_helix, mercury resistance ALFP_1715 SM00382 ATPases associated with a variety of cellular activities ALFP_1718 SM00382 ATPases associated with a variety of cellular activities ALFP_1724 SM00862 Transcriptional regulatory protein, C terminal ALFP_1728 SM00382 ATPases associated with a variety of cellular activities ALFP_1733 SM00854 Bacterial capsule synthesis protein PGA_cap ALFP_1742 SM00382 ATPases associated with a variety of cellular activities ALFP_1789 SM01252 ALFP_1789 ALFP_1800 SM00631 ALFP_1800 ALFP_1820 SM00530 Helix-turn-helix XRE-family like proteins ALFP_1829 SM00481 DNA polymerase alpha chain like domain ALFP_1832 SM01144 ALFP_1832 ALFP_1848 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ALFP_1852 SM00834 Putative regulatory protein ALFP_1858 SM00342 helix_turn_helix, arabinose operon control protein ALFP_1864 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_1871 SM00729 Elongator protein 3, MiaB family, Radical SAM ALFP_1872 SM01230 ALFP_1872 ALFP_1877 SM00382 ATPases associated with a variety of cellular activities ALFP_1882 SM00487 DEAD-like helicases superfamily ALFP_1882 SM00490 helicase superfamily c-terminal domain ALFP_1886 SM00382 ATPases associated with a variety of cellular activities ALFP_1894 SM00382 ATPases associated with a variety of cellular activities ALFP_1895 SM00382 ATPases associated with a variety of cellular activities ALFP_1900 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALFP_1906 SM00342 helix_turn_helix, arabinose operon control protein ALFP_1907 SM01007 Class II Aldolase and Adducin N-terminal domain ALFP_1912 SM00248 ankyrin repeats ALFP_1929 SM00822 ALFP_1929 ALFP_1935 SM00867 YceI-like domain ALFP_1936 SM00867 YceI-like domain ALFP_1941 SM00248 ankyrin repeats ALFP_1964 SM00935 Outer membrane protein (OmpH-like) ALFP_1966 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ALFP_1975 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ALFP_1986 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ALFP_1986 SM00091 PAS domain ALFP_1986 SM00387 Histidine kinase-like ATPases ALFP_1986 SM00388 His Kinase A (phosphoacceptor) domain ALFP_1987 SM00421 helix_turn_helix, Lux Regulon ALFP_1987 SM00448 cheY-homologous receiver domain ALFP_1991 SM00838 Elongation factor G C-terminus ALFP_1991 SM00889 Elongation factor G, domain IV ALFP_1992 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ALFP_1994 SM00422 helix_turn_helix, mercury resistance ALFP_2000 SM00382 ATPases associated with a variety of cellular activities ALFP_2015 SM00072 Guanylate kinase homologues. ALFP_2016 SM01409 ALFP_2016 ALFP_2017 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ALFP_2017 SM00954 Region found in RelA / SpoT proteins ALFP_2028 SM00938 Nitrogen regulatory protein P-II ALFP_2036 SM00257 Lysin motif ALFP_2039 SM01207 ALFP_2039 ALFP_2046 SM00382 ATPases associated with a variety of cellular activities ALFP_2049 SM00382 ATPases associated with a variety of cellular activities ALFP_2056 SM00342 helix_turn_helix, arabinose operon control protein ALFP_2064 SM00859 Semialdehyde dehydrogenase, NAD binding domain ALFP_2065 SM01329 ALFP_2065 ALFP_2068 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_2071 SM00421 helix_turn_helix, Lux Regulon ALFP_2071 SM00448 cheY-homologous receiver domain ALFP_2072 SM00387 Histidine kinase-like ATPases ALFP_2072 SM00388 His Kinase A (phosphoacceptor) domain ALFP_2078 SM00116 Domain in cystathionine beta-synthase and other proteins. ALFP_2085 SM00240 Forkhead associated domain ALFP_2087 SM00858 ALFP_2087 ALFP_2100 SM00881 CoA binding domain ALFP_2106 SM00382 ATPases associated with a variety of cellular activities ALFP_2108 SM00448 cheY-homologous receiver domain ALFP_2108 SM00862 Transcriptional regulatory protein, C terminal ALFP_2109 SM00387 Histidine kinase-like ATPases ALFP_2109 SM00388 His Kinase A (phosphoacceptor) domain ALFP_2112 SM00342 helix_turn_helix, arabinose operon control protein ALFP_2122 SM01359 ALFP_2122 ALFP_2122 SM01360 ALFP_2122 ALFP_2125 SM00729 Elongator protein 3, MiaB family, Radical SAM ALFP_2136 SM00530 Helix-turn-helix XRE-family like proteins ALFP_2139 SM00387 Histidine kinase-like ATPases ALFP_2139 SM00388 His Kinase A (phosphoacceptor) domain ALFP_2140 SM00448 cheY-homologous receiver domain ALFP_2140 SM00862 Transcriptional regulatory protein, C terminal ALFP_2144 SM00382 ATPases associated with a variety of cellular activities ALFP_2150 SM00357 Cold shock protein domain ALFP_2151 SM00411 bacterial (prokaryotic) histone like domain ALFP_2157 SM00344 helix_turn_helix ASNC type ALFP_2166 SM00967 RNA 2'-O ribose methyltransferase substrate binding ALFP_2167 SM00316 Ribosomal protein S1-like RNA-binding domain ALFP_2167 SM00357 Cold shock protein domain ALFP_2167 SM00955 ALFP_2167 ALFP_2169 SM00354 helix_turn _helix lactose operon repressor ALFP_2172 SM00382 ATPases associated with a variety of cellular activities ALFP_2173 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_2185 SM00382 ATPases associated with a variety of cellular activities ALFP_2200 SM00342 helix_turn_helix, arabinose operon control protein ALFP_2205 SM01092 CO dehydrogenase flavoprotein C-terminal domain ALFP_2206 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_2210 SM00448 cheY-homologous receiver domain ALFP_2210 SM00862 Transcriptional regulatory protein, C terminal ALFP_2211 SM00387 Histidine kinase-like ATPases ALFP_2213 SM00493 ALFP_2213 ALFP_2213 SM00766 DNA primase DnaG DnaB-binding ALFP_2216 SM00788 Adenylosuccinate synthetase ALFP_2218 SM00244 prohibitin homologues ALFP_2219 SM00244 prohibitin homologues ALFP_2224 SM00564 beta-propeller repeat ALFP_2230 SM00562 ALFP_2230 ALFP_2236 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ALFP_2238 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_2238 SM00895 ALFP_2238 ALFP_2249 SM00434 DNA Topoisomerase IV ALFP_2250 SM00387 Histidine kinase-like ATPases ALFP_2250 SM00433 TopoisomeraseII ALFP_2252 SM00357 Cold shock protein domain ALFP_2252 SM00382 ATPases associated with a variety of cellular activities ALFP_2252 SM00959 Rho termination factor, N-terminal domain ALFP_2253 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALFP_2254 SM00903 Flavin reductase like domain ALFP_2257 SM00382 ATPases associated with a variety of cellular activities ALFP_2261 SM00989 ALFP_2261 ALFP_2262 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_2262 SM00895 ALFP_2262 ALFP_2267 SM00382 ATPases associated with a variety of cellular activities ALFP_2267 SM01086 C-terminal, D2-small domain, of ClpB protein ALFP_2268 SM00100 Cyclic nucleotide-monophosphate binding domain ALFP_2268 SM00419 helix_turn_helix, cAMP Regulatory protein ALFP_2283 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ALFP_2283 SM00465 GIY-YIG type nucleases (URI domain) ALFP_2296 SM00479 ALFP_2296 ALFP_2306 SM00893 Electron transfer flavoprotein domain ALFP_2307 SM00893 Electron transfer flavoprotein domain ALFP_2312 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ALFP_2317 SM00411 bacterial (prokaryotic) histone like domain ALFP_2318 SM00316 Ribosomal protein S1-like RNA-binding domain ALFP_2322 SM00830 Chorismate mutase type II ALFP_2324 SM00434 DNA Topoisomerase IV ALFP_2335 SM01060 ALFP_2335 ALFP_2338 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_2349 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_2361 SM00487 DEAD-like helicases superfamily ALFP_2367 SM00382 ATPases associated with a variety of cellular activities ALFP_2376 SM00421 helix_turn_helix, Lux Regulon ALFP_2376 SM00448 cheY-homologous receiver domain ALFP_2377 SM00091 PAS domain ALFP_2377 SM00387 Histidine kinase-like ATPases ALFP_2377 SM00388 His Kinase A (phosphoacceptor) domain ALFP_2377 SM00448 cheY-homologous receiver domain ALFP_2382 SM00387 Histidine kinase-like ATPases ALFP_2382 SM00388 His Kinase A (phosphoacceptor) domain ALFP_2383 SM00448 cheY-homologous receiver domain ALFP_2384 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ALFP_2396 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_2399 SM00938 Nitrogen regulatory protein P-II ALFP_2404 SM00342 helix_turn_helix, arabinose operon control protein ALFP_2412 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_2415 SM00382 ATPases associated with a variety of cellular activities ALFP_2422 SM00382 ATPases associated with a variety of cellular activities ALFP_2426 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_2432 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_2432 SM00529 Helix-turn-helix diphteria tox regulatory element ALFP_2435 SM00528 Domain in histone-like proteins of HNS family ALFP_2439 SM00829 Enoylreductase ALFP_2441 SM01329 ALFP_2441 ALFP_2445 SM01209 ALFP_2445 ALFP_2445 SM01210 ALFP_2445 ALFP_2468 SM00382 ATPases associated with a variety of cellular activities ALFP_2481 SM00981 ALFP_2481 ALFP_2487 SM01192 ALFP_2487 ALFP_2487 SM01193 ALFP_2487 ALFP_2488 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_2496 SM00882 Coenzyme A transferase ALFP_2497 SM00882 Coenzyme A transferase ALFP_2518 SM00358 Double-stranded RNA binding motif ALFP_2518 SM00535 Ribonuclease III family ALFP_2520 SM00838 Elongation factor G C-terminus ALFP_2521 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ALFP_2526 SM00825 Beta-ketoacyl synthase ALFP_2528 SM00822 ALFP_2528 ALFP_2529 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ALFP_2536 SM00644 ALFP_2536 ALFP_2540 SM00363 S4 RNA-binding domain ALFP_2541 SM00316 Ribosomal protein S1-like RNA-binding domain ALFP_2545 SM00954 Region found in RelA / SpoT proteins ALFP_2551 SM00478 endonuclease III ALFP_2551 SM00525 ALFP_2551 ALFP_2554 SM00382 ATPases associated with a variety of cellular activities ALFP_2555 SM00382 ATPases associated with a variety of cellular activities ALFP_2563 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ALFP_2563 SM00292 breast cancer carboxy-terminal domain ALFP_2563 SM00532 Ligase N family ALFP_2564 SM00771 ZipA, C-terminal domain (FtsZ-binding) ALFP_2565 SM00968 SMC proteins Flexible Hinge Domain ALFP_2567 SM00986 Uracil DNA glycosylase superfamily ALFP_2567 SM00987 UreE urease accessory protein, C-terminal domain ALFP_2569 SM00448 cheY-homologous receiver domain ALFP_2569 SM00862 Transcriptional regulatory protein, C terminal ALFP_2570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_2570 SM00387 Histidine kinase-like ATPases ALFP_2570 SM00388 His Kinase A (phosphoacceptor) domain ALFP_2573 SM00487 DEAD-like helicases superfamily ALFP_2573 SM00490 helicase superfamily c-terminal domain ALFP_2573 SM00982 ALFP_2573 ALFP_2573 SM01058 CarD-like/TRCF domain ALFP_2584 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ALFP_2585 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ALFP_2595 SM00829 Enoylreductase ALFP_2597 SM00316 Ribosomal protein S1-like RNA-binding domain ALFP_2597 SM00322 K homology RNA-binding domain ALFP_2598 SM01387 ALFP_2598 ALFP_2610 SM00382 ATPases associated with a variety of cellular activities ALFP_2612 SM00382 ATPases associated with a variety of cellular activities ALFP_2612 SM00843 ALFP_2612 ALFP_2614 SM00463 Small MutS-related domain ALFP_2615 SM00028 Tetratricopeptide repeats ALFP_2618 SM00903 Flavin reductase like domain ALFP_2619 SM00886 Stress responsive A/B Barrel Domain ALFP_2623 SM01329 ALFP_2623 ALFP_2627 SM00382 ATPases associated with a variety of cellular activities ALFP_2631 SM00382 ATPases associated with a variety of cellular activities ALFP_2634 SM00028 Tetratricopeptide repeats ALFP_2640 SM00858 ALFP_2640 ALFP_2647 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_2651 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_2653 SM00271 DnaJ molecular chaperone homology domain ALFP_2664 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_2664 SM00895 ALFP_2664 ALFP_2669 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_2669 SM00895 ALFP_2669 ALFP_2672 SM00342 helix_turn_helix, arabinose operon control protein ALFP_2681 SM00342 helix_turn_helix, arabinose operon control protein ALFP_2685 SM00953 ALFP_2685 ALFP_2688 SM00382 ATPases associated with a variety of cellular activities ALFP_2689 SM00382 ATPases associated with a variety of cellular activities ALFP_2694 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_2695 SM00487 DEAD-like helicases superfamily ALFP_2695 SM00490 helicase superfamily c-terminal domain ALFP_2705 SM00859 Semialdehyde dehydrogenase, NAD binding domain ALFP_2711 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_2717 SM00822 ALFP_2717 ALFP_2720 SM00382 ATPases associated with a variety of cellular activities ALFP_2731 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_2738 SM00422 helix_turn_helix, mercury resistance ALFP_2744 SM01012 ALFP_2744 ALFP_2753 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_2766 SM00052 Putative diguanylate phosphodiesterase ALFP_2767 SM00857 Resolvase, N terminal domain ALFP_2769 SM00382 ATPases associated with a variety of cellular activities ALFP_2780 SM00116 Domain in cystathionine beta-synthase and other proteins. ALFP_2785 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_2793 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_2794 SM00852 Probable molybdopterin binding domain ALFP_2797 SM00487 DEAD-like helicases superfamily ALFP_2797 SM00490 helicase superfamily c-terminal domain ALFP_2810 SM00798 AICARFT/IMPCHase bienzyme ALFP_2810 SM00851 MGS-like domain ALFP_2812 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ALFP_2814 SM00382 ATPases associated with a variety of cellular activities ALFP_2817 SM00151 SWI complex, BAF60b domains ALFP_2822 SM00450 Rhodanese Homology Domain ALFP_2834 SM00382 ATPases associated with a variety of cellular activities ALFP_2837 SM00387 Histidine kinase-like ATPases ALFP_2837 SM00388 His Kinase A (phosphoacceptor) domain ALFP_2838 SM00448 cheY-homologous receiver domain ALFP_2838 SM00862 Transcriptional regulatory protein, C terminal ALFP_2855 SM00382 ATPases associated with a variety of cellular activities ALFP_2863 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_2871 SM01150 ALFP_2871 ALFP_2879 SM00267 diguanylate cyclase ALFP_2883 SM00883 Chaperonin 10 Kd subunit ALFP_2886 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family ALFP_2890 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_2897 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_2898 SM00880 ALFP_2898 ALFP_2898 SM01118 ALFP_2898 ALFP_2899 SM00382 ATPases associated with a variety of cellular activities ALFP_2899 SM00962 SRP54-type protein, GTPase domain ALFP_2899 SM00963 SRP54-type protein, helical bundle domain ALFP_2910 SM00869 Autotransporter beta-domain ALFP_2914 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_2916 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_2918 SM00382 ATPases associated with a variety of cellular activities ALFP_2919 SM00382 ATPases associated with a variety of cellular activities ALFP_2924 SM00267 diguanylate cyclase ALFP_2931 SM00849 Metallo-beta-lactamase superfamily ALFP_2932 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_2932 SM00866 ALFP_2932 ALFP_2933 SM01043 Bacterial transcriptional activator domain ALFP_2934 SM00155 Phospholipase D. Active site motifs. ALFP_2941 SM00382 ATPases associated with a variety of cellular activities ALFP_2945 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_2956 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_2957 SM00382 ATPases associated with a variety of cellular activities ALFP_2965 SM00479 ALFP_2965 ALFP_2970 SM00849 Metallo-beta-lactamase superfamily ALFP_2971 SM00257 Lysin motif ALFP_2975 SM01092 CO dehydrogenase flavoprotein C-terminal domain ALFP_2977 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_2979 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_2980 SM00382 ATPases associated with a variety of cellular activities ALFP_2980 SM00448 cheY-homologous receiver domain ALFP_2981 SM00387 Histidine kinase-like ATPases ALFP_2981 SM00388 His Kinase A (phosphoacceptor) domain ALFP_2985 SM00450 Rhodanese Homology Domain ALFP_2991 SM00382 ATPases associated with a variety of cellular activities ALFP_2997 SM00822 ALFP_2997 ALFP_3003 SM00881 CoA binding domain ALFP_3005 SM00829 Enoylreductase ALFP_3008 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_3010 SM00829 Enoylreductase ALFP_3016 SM00382 ATPases associated with a variety of cellular activities ALFP_3017 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_3023 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_3023 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. ALFP_3024 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ALFP_3028 SM00448 cheY-homologous receiver domain ALFP_3028 SM00862 Transcriptional regulatory protein, C terminal ALFP_3029 SM00387 Histidine kinase-like ATPases ALFP_3029 SM00388 His Kinase A (phosphoacceptor) domain ALFP_3033 SM00528 Domain in histone-like proteins of HNS family ALFP_3059 SM00382 ATPases associated with a variety of cellular activities ALFP_3068 SM00363 S4 RNA-binding domain ALFP_3073 SM00859 Semialdehyde dehydrogenase, NAD binding domain ALFP_3081 SM00831 Cation transporter/ATPase, N-terminus ALFP_3082 SM00387 Histidine kinase-like ATPases ALFP_3082 SM00388 His Kinase A (phosphoacceptor) domain ALFP_3083 SM00421 helix_turn_helix, Lux Regulon ALFP_3083 SM00448 cheY-homologous receiver domain ALFP_3093 SM01322 ALFP_3093 ALFP_3095 SM00344 helix_turn_helix ASNC type ALFP_3099 SM00478 endonuclease III ALFP_3104 SM00878 Biotin carboxylase C-terminal domain ALFP_3110 SM00955 ALFP_3110 ALFP_3116 SM00563 Phosphate acyltransferases ALFP_3117 SM00732 Likely ribonuclease with RNase H fold. ALFP_3127 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_3135 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase ALFP_3137 SM00862 Transcriptional regulatory protein, C terminal ALFP_3138 SM00530 Helix-turn-helix XRE-family like proteins ALFP_3139 SM00530 Helix-turn-helix XRE-family like proteins ALFP_3143 SM00382 ATPases associated with a variety of cellular activities ALFP_3146 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_3147 SM00382 ATPases associated with a variety of cellular activities ALFP_3149 SM00478 endonuclease III ALFP_3157 SM00845 GatB domain ALFP_3166 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ALFP_3166 SM00382 ATPases associated with a variety of cellular activities ALFP_3167 SM00100 Cyclic nucleotide-monophosphate binding domain ALFP_3167 SM00419 helix_turn_helix, cAMP Regulatory protein ALFP_3181 SM00421 helix_turn_helix, Lux Regulon ALFP_3186 SM00530 Helix-turn-helix XRE-family like proteins ALFP_3187 SM01018 B12 binding domain ALFP_3190 SM00965 Secretin and TonB N terminus short domain ALFP_3211 SM00978 ALFP_3211 ALFP_3213 SM00448 cheY-homologous receiver domain ALFP_3213 SM00862 Transcriptional regulatory protein, C terminal ALFP_3214 SM00387 Histidine kinase-like ATPases ALFP_3214 SM00388 His Kinase A (phosphoacceptor) domain ALFP_3216 SM00796 Allophanate hydrolase subunit 1 ALFP_3217 SM00797 Allophanate hydrolase subunit 2 ALFP_3222 SM00869 Autotransporter beta-domain ALFP_3225 SM00382 ATPases associated with a variety of cellular activities ALFP_3226 SM00382 ATPases associated with a variety of cellular activities ALFP_3231 SM00116 Domain in cystathionine beta-synthase and other proteins. ALFP_3235 SM00382 ATPases associated with a variety of cellular activities ALFP_3244 SM00749 bacterial OsmY and nodulation domain ALFP_3249 SM00342 helix_turn_helix, arabinose operon control protein ALFP_3251 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ALFP_3251 SM00245 tail specific protease ALFP_3253 SM00855 Phosphoglycerate mutase family ALFP_3254 SM00450 Rhodanese Homology Domain ALFP_3263 SM00448 cheY-homologous receiver domain ALFP_3263 SM00862 Transcriptional regulatory protein, C terminal ALFP_3264 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_3264 SM00387 Histidine kinase-like ATPases ALFP_3264 SM00388 His Kinase A (phosphoacceptor) domain ALFP_3266 SM00448 cheY-homologous receiver domain ALFP_3267 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_3267 SM00387 Histidine kinase-like ATPases ALFP_3267 SM00388 His Kinase A (phosphoacceptor) domain ALFP_3270 SM00729 Elongator protein 3, MiaB family, Radical SAM ALFP_3276 SM00382 ATPases associated with a variety of cellular activities ALFP_3293 SM00382 ATPases associated with a variety of cellular activities ALFP_3303 SM00905 Dihydroneopterin aldolase ALFP_3308 SM00937 ALFP_3308 ALFP_3316 SM00965 Secretin and TonB N terminus short domain ALFP_3329 SM00387 Histidine kinase-like ATPases ALFP_3329 SM00388 His Kinase A (phosphoacceptor) domain ALFP_3330 SM00448 cheY-homologous receiver domain ALFP_3330 SM00862 Transcriptional regulatory protein, C terminal ALFP_3334 SM00530 Helix-turn-helix XRE-family like proteins ALFP_3337 SM00382 ATPases associated with a variety of cellular activities ALFP_3340 SM00100 Cyclic nucleotide-monophosphate binding domain ALFP_3340 SM00419 helix_turn_helix, cAMP Regulatory protein ALFP_3342 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ALFP_3349 SM00530 Helix-turn-helix XRE-family like proteins ALFP_3350 SM01007 Class II Aldolase and Adducin N-terminal domain ALFP_3360 SM00450 Rhodanese Homology Domain ALFP_3361 SM00900 ALFP_3361 ALFP_3363 SM00710 Parallel beta-helix repeats ALFP_3363 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses ALFP_3364 SM00382 ATPases associated with a variety of cellular activities ALFP_3381 SM00984 UDP binding domain ALFP_3388 SM00822 ALFP_3388 ALFP_3388 SM00823 Phosphopantetheine attachment site ALFP_3388 SM00825 Beta-ketoacyl synthase ALFP_3388 SM00826 ALFP_3388 ALFP_3388 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ALFP_3388 SM00829 Enoylreductase ALFP_3388 SM01294 ALFP_3388 ALFP_3392 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_3420 SM00382 ATPases associated with a variety of cellular activities ALFP_3425 SM00382 ATPases associated with a variety of cellular activities ALFP_3441 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ALFP_3458 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ALFP_3472 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_3472 SM00895 ALFP_3472 ALFP_3473 SM00344 helix_turn_helix ASNC type ALFP_3483 SM00267 diguanylate cyclase ALFP_3492 SM00822 ALFP_3492 ALFP_3499 SM00749 bacterial OsmY and nodulation domain ALFP_3501 SM00382 ATPases associated with a variety of cellular activities ALFP_3506 SM00965 Secretin and TonB N terminus short domain ALFP_3511 SM00344 helix_turn_helix ASNC type ALFP_3532 SM00829 Enoylreductase ALFP_3533 SM00155 Phospholipase D. Active site motifs. ALFP_3545 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_3545 SM00866 ALFP_3545 ALFP_3546 SM00342 helix_turn_helix, arabinose operon control protein ALFP_3552 SM00422 helix_turn_helix, mercury resistance ALFP_3554 SM00530 Helix-turn-helix XRE-family like proteins ALFP_3566 SM00849 Metallo-beta-lactamase superfamily ALFP_3578 SM01236 ALFP_3578 ALFP_3582 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_3582 SM00895 ALFP_3582 ALFP_3591 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_3591 SM00895 ALFP_3591 ALFP_3595 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ALFP_3601 SM00052 Putative diguanylate phosphodiesterase ALFP_3601 SM00267 diguanylate cyclase ALFP_3607 SM01004 Delta-aminolevulinic acid dehydratase ALFP_3610 SM00342 helix_turn_helix, arabinose operon control protein ALFP_3611 SM00903 Flavin reductase like domain ALFP_3614 SM00662 RNA polymerases D ALFP_3615 SM00363 S4 RNA-binding domain ALFP_3615 SM01390 ALFP_3615 ALFP_3629 SM01374 ALFP_3629 ALFP_3630 SM00052 Putative diguanylate phosphodiesterase ALFP_3630 SM00267 diguanylate cyclase ALFP_3632 SM00327 von Willebrand factor (vWF) type A domain ALFP_3633 SM00421 helix_turn_helix, Lux Regulon ALFP_3635 SM00382 ATPases associated with a variety of cellular activities ALFP_3652 SM00382 ATPases associated with a variety of cellular activities ALFP_3655 SM00342 helix_turn_helix, arabinose operon control protein ALFP_3659 SM00322 K homology RNA-binding domain ALFP_3662 SM01382 ALFP_3662 ALFP_3662 SM01383 ALFP_3662 ALFP_3667 SM00382 ATPases associated with a variety of cellular activities ALFP_3669 SM01403 ALFP_3669 ALFP_3671 SM00838 Elongation factor G C-terminus ALFP_3671 SM00889 Elongation factor G, domain IV ALFP_3674 SM00448 cheY-homologous receiver domain ALFP_3674 SM00862 Transcriptional regulatory protein, C terminal ALFP_3675 SM00257 Lysin motif ALFP_3676 SM00387 Histidine kinase-like ATPases ALFP_3676 SM01080 ALFP_3676 ALFP_3677 SM00342 helix_turn_helix, arabinose operon control protein ALFP_3680 SM00663 RNA polymerase I subunit A N-terminus ALFP_3685 SM00649 Ribosomal protein L11/L12 ALFP_3686 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. ALFP_3686 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. ALFP_3690 SM00470 ParB-like nuclease domain ALFP_3693 SM01228 ALFP_3693 ALFP_3697 SM00267 diguanylate cyclase ALFP_3705 SM00869 Autotransporter beta-domain ALFP_3711 SM00530 Helix-turn-helix XRE-family like proteins ALFP_3719 SM00382 ATPases associated with a variety of cellular activities ALFP_3720 SM00382 ATPases associated with a variety of cellular activities ALFP_3728 SM01060 ALFP_3728 ALFP_3730 SM01234 ALFP_3730