ALFP_3375 2ab7895af0dd28cba949331cde8e5a9f 438 Gene3D G3DSA:3.40.50.2000 52 254 3.1E-24 T 12-10-2018 ALFP_3375 2ab7895af0dd28cba949331cde8e5a9f 438 Pfam PF13579 Glycosyl transferase 4-like domain 60 238 7.9E-19 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 ALFP_3375 2ab7895af0dd28cba949331cde8e5a9f 438 Gene3D G3DSA:3.40.50.2000 255 420 2.1E-27 T 12-10-2018 ALFP_3375 2ab7895af0dd28cba949331cde8e5a9f 438 Pfam PF13692 Glycosyl transferases group 1 256 398 1.3E-19 T 12-10-2018 ALFP_3375 2ab7895af0dd28cba949331cde8e5a9f 438 SUPERFAMILY SSF53756 55 427 1.1E-56 T 12-10-2018 ALFP_2146 9a56f6227bab298f5f9f8bb2d0814012 304 SUPERFAMILY SSF161098 26 275 6.87E-53 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2146 9a56f6227bab298f5f9f8bb2d0814012 304 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 279 1.7E-25 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_2146 9a56f6227bab298f5f9f8bb2d0814012 304 Gene3D G3DSA:1.10.3720.10 24 282 5.1E-64 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2146 9a56f6227bab298f5f9f8bb2d0814012 304 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 11 277 7.5E-95 T 12-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 ALFP_2146 9a56f6227bab298f5f9f8bb2d0814012 304 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 19 280 1.3E-120 T 12-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 ALFP_1776 c4ad43ac3ec4d4c7ccdf6411a17c09f3 141 Gene3D G3DSA:1.10.10.1400 1 68 3.4E-6 T 12-10-2018 IPR038713 Terminase small subunit, N-terminal domain superfamily ALFP_1776 c4ad43ac3ec4d4c7ccdf6411a17c09f3 141 Pfam PF03592 Terminase small subunit 3 90 1.6E-14 T 12-10-2018 IPR005335 Terminase small subunit GO:0006323 ALFP_2807 a76b25433705b00898c1a8eea31fb283 386 Pfam PF01494 FAD binding domain 160 312 4.4E-8 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 ALFP_2807 a76b25433705b00898c1a8eea31fb283 386 Gene3D G3DSA:3.50.50.60 7 330 1.1E-65 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2807 a76b25433705b00898c1a8eea31fb283 386 Gene3D G3DSA:3.30.9.50 82 262 1.1E-65 T 12-10-2018 ALFP_2807 a76b25433705b00898c1a8eea31fb283 386 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 287 300 - T 12-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 ALFP_2807 a76b25433705b00898c1a8eea31fb283 386 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 6.9E-11 T 12-10-2018 ALFP_2807 a76b25433705b00898c1a8eea31fb283 386 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 273 288 6.9E-11 T 12-10-2018 ALFP_2807 a76b25433705b00898c1a8eea31fb283 386 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 288 304 6.9E-11 T 12-10-2018 ALFP_2807 a76b25433705b00898c1a8eea31fb283 386 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 7 381 4.1E-84 T 12-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 ALFP_2807 a76b25433705b00898c1a8eea31fb283 386 SUPERFAMILY SSF51905 5 381 6.99E-34 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1271 b78b88bef12a84f7017aebf781d54346 261 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1271 b78b88bef12a84f7017aebf781d54346 261 Pfam PF00005 ABC transporter 21 160 4.4E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1271 b78b88bef12a84f7017aebf781d54346 261 SUPERFAMILY SSF52540 4 216 4.75E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1271 b78b88bef12a84f7017aebf781d54346 261 SMART SM00382 30 211 5.3E-20 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1271 b78b88bef12a84f7017aebf781d54346 261 Gene3D G3DSA:3.40.50.300 2 238 8.0E-64 T 12-10-2018 ALFP_2184 90b6129df334574ade27dd2f4d4e3cb5 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 1.2E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2184 90b6129df334574ade27dd2f4d4e3cb5 291 Gene3D G3DSA:1.10.10.10 3 81 6.0E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2184 90b6129df334574ade27dd2f4d4e3cb5 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.6E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2184 90b6129df334574ade27dd2f4d4e3cb5 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.6E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2184 90b6129df334574ade27dd2f4d4e3cb5 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.6E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2184 90b6129df334574ade27dd2f4d4e3cb5 291 SUPERFAMILY SSF46785 6 108 5.99E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2184 90b6129df334574ade27dd2f4d4e3cb5 291 TIGRFAM TIGR03339 phn_lysR: aminoethylphosphonate catabolism associated LysR family transcriptional regulator 5 282 6.8E-103 T 12-10-2018 IPR017724 Aminoethylphosphonate utilisation-associated transcription regulator, LysR-type ALFP_2184 90b6129df334574ade27dd2f4d4e3cb5 291 Gene3D G3DSA:3.40.190.290 91 287 2.1E-39 T 12-10-2018 ALFP_2184 90b6129df334574ade27dd2f4d4e3cb5 291 SUPERFAMILY SSF53850 90 288 4.89E-36 T 12-10-2018 ALFP_2184 90b6129df334574ade27dd2f4d4e3cb5 291 Pfam PF03466 LysR substrate binding domain 89 287 3.7E-37 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0975 1cdd2ff6cff8d3b9b16170cc2e202c67 215 PIRSF PIRSF001467 33 215 3.9E-28 T 12-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 ALFP_0975 1cdd2ff6cff8d3b9b16170cc2e202c67 215 Gene3D G3DSA:2.40.100.10 49 214 9.8E-69 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily ALFP_0975 1cdd2ff6cff8d3b9b16170cc2e202c67 215 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 53 207 2.9E-48 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 ALFP_0975 1cdd2ff6cff8d3b9b16170cc2e202c67 215 SUPERFAMILY SSF50891 49 214 1.9E-58 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily ALFP_0975 1cdd2ff6cff8d3b9b16170cc2e202c67 215 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 87 104 - T 12-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 ALFP_0975 1cdd2ff6cff8d3b9b16170cc2e202c67 215 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 104 5.0E-12 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 ALFP_0975 1cdd2ff6cff8d3b9b16170cc2e202c67 215 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 66 81 5.0E-12 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 ALFP_0975 1cdd2ff6cff8d3b9b16170cc2e202c67 215 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 169 184 5.0E-12 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 Gene3D G3DSA:2.40.30.10 208 336 5.2E-52 T 12-10-2018 ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 Pfam PF03144 Elongation factor Tu domain 2 227 295 1.8E-16 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 2.6E-228 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 Gene3D G3DSA:2.40.30.10 340 395 2.6E-28 T 12-10-2018 ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 SUPERFAMILY SSF50447 207 303 6.48E-30 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 SUPERFAMILY SSF52540 5 221 6.49E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 Gene3D G3DSA:3.40.50.300 1 205 1.7E-69 T 12-10-2018 ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 5.4E-34 T 12-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 8.3E-58 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 7.9E-14 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 SUPERFAMILY SSF50465 304 396 2.3E-36 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal ALFP_3670 5df30acb8f3fbb4dfa74209ef8471ef4 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 59.942 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 Gene3D G3DSA:2.40.30.10 208 336 5.2E-52 T 12-10-2018 ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 Pfam PF03144 Elongation factor Tu domain 2 227 295 1.8E-16 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 2.6E-228 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 Gene3D G3DSA:2.40.30.10 340 395 2.6E-28 T 12-10-2018 ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 SUPERFAMILY SSF50447 207 303 6.48E-30 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 SUPERFAMILY SSF52540 5 221 6.49E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 Gene3D G3DSA:3.40.50.300 1 205 1.7E-69 T 12-10-2018 ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 5.4E-34 T 12-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 8.3E-58 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 7.9E-14 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 SUPERFAMILY SSF50465 304 396 2.3E-36 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal ALFP_3688 5df30acb8f3fbb4dfa74209ef8471ef4 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 59.942 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 ALFP_2516 391e3d3cd41584b71edc67449f08dd8f 196 SUPERFAMILY SSF50249 10 81 1.59E-10 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2516 391e3d3cd41584b71edc67449f08dd8f 196 Gene3D G3DSA:2.40.50.140 9 83 1.3E-25 T 12-10-2018 ALFP_2516 391e3d3cd41584b71edc67449f08dd8f 196 Pfam PF11967 Recombination protein O N terminal 11 81 8.4E-19 T 12-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal ALFP_2516 391e3d3cd41584b71edc67449f08dd8f 196 Pfam PF02565 Recombination protein O C terminal 88 153 4.8E-14 T 12-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 ALFP_2516 391e3d3cd41584b71edc67449f08dd8f 196 SUPERFAMILY SSF57863 91 150 8.63E-5 T 12-10-2018 IPR037278 ARFGAP/RecO-like zinc finger ALFP_2516 391e3d3cd41584b71edc67449f08dd8f 196 Gene3D G3DSA:1.20.1440.120 84 166 1.9E-23 T 12-10-2018 ALFP_2516 391e3d3cd41584b71edc67449f08dd8f 196 TIGRFAM TIGR00613 reco: DNA repair protein RecO 13 153 8.2E-17 T 12-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 ALFP_0980 549038595060b12b8567e9e5cf9ed343 315 Pfam PF09179 TilS substrate binding domain 226 294 7.0E-12 T 12-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 ALFP_0980 549038595060b12b8567e9e5cf9ed343 315 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 1 287 15.554 T 12-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 ALFP_0980 549038595060b12b8567e9e5cf9ed343 315 Gene3D G3DSA:1.20.59.20 217 293 7.1E-6 T 12-10-2018 ALFP_0980 549038595060b12b8567e9e5cf9ed343 315 SUPERFAMILY SSF82829 221 297 1.27E-15 T 12-10-2018 ALFP_0980 549038595060b12b8567e9e5cf9ed343 315 SUPERFAMILY SSF52402 4 207 1.9E-38 T 12-10-2018 ALFP_0980 549038595060b12b8567e9e5cf9ed343 315 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 11 177 6.4E-36 T 12-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 ALFP_0980 549038595060b12b8567e9e5cf9ed343 315 Gene3D G3DSA:3.40.50.620 1 208 7.7E-51 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_0980 549038595060b12b8567e9e5cf9ed343 315 Pfam PF01171 PP-loop family 2 174 2.2E-38 T 12-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 ALFP_3142 2e18aa6d027b86aa2c9efbcdd812c094 329 SUPERFAMILY SSF53850 114 290 5.34E-10 T 12-10-2018 ALFP_3142 2e18aa6d027b86aa2c9efbcdd812c094 329 Gene3D G3DSA:3.40.190.10 127 254 3.7E-104 T 12-10-2018 ALFP_3142 2e18aa6d027b86aa2c9efbcdd812c094 329 Gene3D G3DSA:3.40.190.150 30 319 3.7E-104 T 12-10-2018 ALFP_3142 2e18aa6d027b86aa2c9efbcdd812c094 329 PIRSF PIRSF017082 1 327 1.5E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_3142 2e18aa6d027b86aa2c9efbcdd812c094 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 323 2.0E-79 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0416 5b5747f88c739fc6ec8908f30d149e04 465 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 5 464 2.6E-146 T 12-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 ALFP_0416 5b5747f88c739fc6ec8908f30d149e04 465 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 77 91 - T 12-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 ALFP_0416 5b5747f88c739fc6ec8908f30d149e04 465 Gene3D G3DSA:3.40.50.720 227 384 9.2E-238 T 12-10-2018 ALFP_0416 5b5747f88c739fc6ec8908f30d149e04 465 SUPERFAMILY SSF51735 225 384 9.05E-79 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0416 5b5747f88c739fc6ec8908f30d149e04 465 SUPERFAMILY SSF52283 2 465 2.27E-113 T 12-10-2018 ALFP_0416 5b5747f88c739fc6ec8908f30d149e04 465 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 247 263 - T 12-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 ALFP_0416 5b5747f88c739fc6ec8908f30d149e04 465 SMART SM00997 225 384 2.3E-114 T 12-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 ALFP_0416 5b5747f88c739fc6ec8908f30d149e04 465 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 6 457 1.0E-186 T 12-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 ALFP_0416 5b5747f88c739fc6ec8908f30d149e04 465 SMART SM00996 5 464 0.0 T 12-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 ALFP_0416 5b5747f88c739fc6ec8908f30d149e04 465 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 225 384 6.0E-81 T 12-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 ALFP_0416 5b5747f88c739fc6ec8908f30d149e04 465 PIRSF PIRSF001109 1 465 7.6E-190 T 12-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 ALFP_0416 5b5747f88c739fc6ec8908f30d149e04 465 Gene3D G3DSA:3.40.50.1480 6 465 9.2E-238 T 12-10-2018 ALFP_0416 5b5747f88c739fc6ec8908f30d149e04 465 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 1 457 48.788 T 12-10-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508|Reactome: R-HSA-5578997 ALFP_1946 ffd4ff3a27090db27cad2dfa8482dcad 305 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 155 218 7.8E-27 T 12-10-2018 IPR017703 YgfZ/GcvT conserved site ALFP_1946 ffd4ff3a27090db27cad2dfa8482dcad 305 Gene3D G3DSA:3.30.70.1400 13 97 4.2E-23 T 12-10-2018 ALFP_1946 ffd4ff3a27090db27cad2dfa8482dcad 305 Pfam PF01571 Aminomethyltransferase folate-binding domain 14 101 3.6E-6 T 12-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain ALFP_1946 ffd4ff3a27090db27cad2dfa8482dcad 305 SUPERFAMILY SSF103025 5 210 9.26E-51 T 12-10-2018 ALFP_1946 ffd4ff3a27090db27cad2dfa8482dcad 305 Gene3D G3DSA:2.40.30.160 164 289 5.5E-30 T 12-10-2018 ALFP_3686 9727ad0c3cc92186790ad056b436b0e0 177 Gene3D G3DSA:2.30.30.30 118 176 5.0E-26 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 ALFP_3686 9727ad0c3cc92186790ad056b436b0e0 177 Pfam PF00467 KOW motif 126 158 1.3E-7 T 12-10-2018 IPR005824 KOW ALFP_3686 9727ad0c3cc92186790ad056b436b0e0 177 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 176 5.1E-70 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 ALFP_3686 9727ad0c3cc92186790ad056b436b0e0 177 SUPERFAMILY SSF50104 121 176 4.0E-20 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily ALFP_3686 9727ad0c3cc92186790ad056b436b0e0 177 SMART SM00739 123 150 6.2E-6 T 12-10-2018 IPR005824 KOW ALFP_3686 9727ad0c3cc92186790ad056b436b0e0 177 SUPERFAMILY SSF82679 3 113 9.42E-38 T 12-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 ALFP_3686 9727ad0c3cc92186790ad056b436b0e0 177 Pfam PF02357 Transcription termination factor nusG 3 108 6.9E-27 T 12-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 ALFP_3686 9727ad0c3cc92186790ad056b436b0e0 177 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 177 25.691 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 ALFP_3686 9727ad0c3cc92186790ad056b436b0e0 177 ProSitePatterns PS01014 Transcription termination factor nusG signature. 160 169 - T 12-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site ALFP_3686 9727ad0c3cc92186790ad056b436b0e0 177 SMART SM00738 2 111 2.9E-45 T 12-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 ALFP_3686 9727ad0c3cc92186790ad056b436b0e0 177 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 3.8E-20 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 ALFP_3686 9727ad0c3cc92186790ad056b436b0e0 177 PRINTS PR00338 Transcription termination factor NUSG signature 153 169 3.8E-20 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 ALFP_3686 9727ad0c3cc92186790ad056b436b0e0 177 PRINTS PR00338 Transcription termination factor NUSG signature 135 150 3.8E-20 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 ALFP_3686 9727ad0c3cc92186790ad056b436b0e0 177 Gene3D G3DSA:3.30.70.940 1 117 2.7E-46 T 12-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 ALFP_1320 3db1ea13f8e962d813dbeef00e53b940 490 SUPERFAMILY SSF51338 73 484 5.94E-12 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_1320 3db1ea13f8e962d813dbeef00e53b940 490 Gene3D G3DSA:3.20.20.140 130 439 2.1E-124 T 12-10-2018 ALFP_1320 3db1ea13f8e962d813dbeef00e53b940 490 SUPERFAMILY SSF51556 129 433 1.15E-74 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_1320 3db1ea13f8e962d813dbeef00e53b940 490 Pfam PF01979 Amidohydrolase family 125 482 1.6E-25 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 ALFP_1320 3db1ea13f8e962d813dbeef00e53b940 490 Gene3D G3DSA:2.30.40.10 79 482 2.1E-124 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_1118 3acd864c8eaa6b95cef5df0b3ff0e636 238 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 232 1.6E-53 T 12-10-2018 ALFP_1118 3acd864c8eaa6b95cef5df0b3ff0e636 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 68 79 1.5E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1118 3acd864c8eaa6b95cef5df0b3ff0e636 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 121 129 1.5E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1118 3acd864c8eaa6b95cef5df0b3ff0e636 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 159 1.5E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1118 3acd864c8eaa6b95cef5df0b3ff0e636 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 178 5.0E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1118 3acd864c8eaa6b95cef5df0b3ff0e636 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 115 131 5.0E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1118 3acd864c8eaa6b95cef5df0b3ff0e636 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 197 217 5.0E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1118 3acd864c8eaa6b95cef5df0b3ff0e636 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 5.0E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1118 3acd864c8eaa6b95cef5df0b3ff0e636 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 68 79 5.0E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1118 3acd864c8eaa6b95cef5df0b3ff0e636 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 159 5.0E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1118 3acd864c8eaa6b95cef5df0b3ff0e636 238 SUPERFAMILY SSF51735 2 234 6.37E-71 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1118 3acd864c8eaa6b95cef5df0b3ff0e636 238 Gene3D G3DSA:3.40.50.720 1 236 3.4E-69 T 12-10-2018 ALFP_1589 955897454407f434f27297952b7c630a 397 SUPERFAMILY SSF47203 231 382 4.03E-28 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 ALFP_1589 955897454407f434f27297952b7c630a 397 Gene3D G3DSA:2.40.110.10 123 235 1.8E-27 T 12-10-2018 ALFP_1589 955897454407f434f27297952b7c630a 397 Gene3D G3DSA:1.10.540.10 4 121 4.0E-20 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 ALFP_1589 955897454407f434f27297952b7c630a 397 SUPERFAMILY SSF56645 11 241 1.18E-44 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 ALFP_1589 955897454407f434f27297952b7c630a 397 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 120 6.7E-12 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 ALFP_1589 955897454407f434f27297952b7c630a 397 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 379 2.0E-30 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 ALFP_1589 955897454407f434f27297952b7c630a 397 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 124 219 7.8E-16 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 ALFP_1589 955897454407f434f27297952b7c630a 397 Gene3D G3DSA:1.20.140.10 236 388 5.4E-25 T 12-10-2018 ALFP_2565 d77e4b77e54c738da2d8e9b8d8e02fdd 1174 SUPERFAMILY SSF52540 2 1167 4.29E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2565 d77e4b77e54c738da2d8e9b8d8e02fdd 1174 Pfam PF06470 SMC proteins Flexible Hinge Domain 522 624 4.5E-6 T 12-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 ALFP_2565 d77e4b77e54c738da2d8e9b8d8e02fdd 1174 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1167 22.029 T 12-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 ALFP_2565 d77e4b77e54c738da2d8e9b8d8e02fdd 1174 PIRSF PIRSF005719 1 1173 4.8E-242 T 12-10-2018 IPR024704 Structural maintenance of chromosomes protein ALFP_2565 d77e4b77e54c738da2d8e9b8d8e02fdd 1174 Gene3D G3DSA:3.40.50.300 1 281 1.9E-50 T 12-10-2018 ALFP_2565 d77e4b77e54c738da2d8e9b8d8e02fdd 1174 Gene3D G3DSA:3.40.50.300 884 1173 1.0E-44 T 12-10-2018 ALFP_2565 d77e4b77e54c738da2d8e9b8d8e02fdd 1174 SMART SM00968 518 625 7.9E-5 T 12-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 ALFP_2565 d77e4b77e54c738da2d8e9b8d8e02fdd 1174 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1158 1.6E-63 T 12-10-2018 IPR003395 RecF/RecN/SMC, N-terminal ALFP_2565 d77e4b77e54c738da2d8e9b8d8e02fdd 1174 SUPERFAMILY SSF75553 519 673 1.23E-8 T 12-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 ALFP_2565 d77e4b77e54c738da2d8e9b8d8e02fdd 1174 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1165 0.0 T 12-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 SMART SM00271 4 62 1.1E-31 T 12-10-2018 IPR001623 DnaJ domain ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 Gene3D G3DSA:2.10.230.10 142 212 3.5E-24 T 12-10-2018 ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 Pfam PF00226 DnaJ domain 5 67 2.9E-28 T 12-10-2018 IPR001623 DnaJ domain ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 PRINTS PR00625 DnaJ domain signature 42 62 1.3E-32 T 12-10-2018 IPR001623 DnaJ domain ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 PRINTS PR00625 DnaJ domain signature 7 25 1.3E-32 T 12-10-2018 IPR001623 DnaJ domain ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 PRINTS PR00625 DnaJ domain signature 62 81 1.3E-32 T 12-10-2018 IPR001623 DnaJ domain ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 PRINTS PR00625 DnaJ domain signature 25 40 1.3E-32 T 12-10-2018 IPR001623 DnaJ domain ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 SUPERFAMILY SSF49493 262 347 5.49E-23 T 12-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 12-10-2018 IPR018253 DnaJ domain, conserved site ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 Pfam PF01556 DnaJ C terminal domain 124 336 1.1E-40 T 12-10-2018 IPR002939 Chaperone DnaJ, C-terminal ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 375 41.412 T 12-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 Pfam PF00684 DnaJ central domain 150 210 1.4E-13 T 12-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 SUPERFAMILY SSF49493 118 259 4.58E-19 T 12-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 352 4.9E-136 T 12-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 SUPERFAMILY SSF46565 1 114 4.97E-37 T 12-10-2018 IPR036869 Chaperone J-domain superfamily ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 SUPERFAMILY SSF57938 137 214 7.46E-22 T 12-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 Gene3D G3DSA:2.60.260.20 258 364 2.5E-30 T 12-10-2018 ALFP_2653 978fbe43cdd8afce7f371daed6e332ef 377 Gene3D G3DSA:1.10.287.110 1 114 5.6E-38 T 12-10-2018 IPR036869 Chaperone J-domain superfamily ALFP_3429 bde7f14fe5d717f93c8f535123b8df2e 224 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 9 222 52.986 T 12-10-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 ALFP_3429 bde7f14fe5d717f93c8f535123b8df2e 224 SUPERFAMILY SSF53850 9 218 1.11E-64 T 12-10-2018 ALFP_3429 bde7f14fe5d717f93c8f535123b8df2e 224 Gene3D G3DSA:3.40.190.10 104 190 3.6E-67 T 12-10-2018 ALFP_3429 bde7f14fe5d717f93c8f535123b8df2e 224 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 10 198 7.8E-59 T 12-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 ALFP_3429 bde7f14fe5d717f93c8f535123b8df2e 224 Pfam PF01634 ATP phosphoribosyltransferase 59 215 7.9E-48 T 12-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 ALFP_3429 bde7f14fe5d717f93c8f535123b8df2e 224 Gene3D G3DSA:3.40.190.10 11 210 3.6E-67 T 12-10-2018 ALFP_3429 bde7f14fe5d717f93c8f535123b8df2e 224 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 157 178 - T 12-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 ALFP_1952 7c2a77e11a08cf89d30b1325dbef9953 154 SUPERFAMILY SSF74982 3 127 7.32E-46 T 12-10-2018 IPR023620 Small protein B ALFP_1952 7c2a77e11a08cf89d30b1325dbef9953 154 TIGRFAM TIGR00086 smpB: SsrA-binding protein 3 145 5.8E-50 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 ALFP_1952 7c2a77e11a08cf89d30b1325dbef9953 154 Hamap MF_00023 SsrA-binding protein [smpB]. 1 150 66.891 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 ALFP_1952 7c2a77e11a08cf89d30b1325dbef9953 154 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 3 127 1.0E-58 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 ALFP_1952 7c2a77e11a08cf89d30b1325dbef9953 154 Gene3D G3DSA:2.40.280.10 1 124 1.1E-44 T 12-10-2018 IPR023620 Small protein B ALFP_1952 7c2a77e11a08cf89d30b1325dbef9953 154 Pfam PF01668 SmpB protein 3 146 9.8E-55 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 ALFP_1952 7c2a77e11a08cf89d30b1325dbef9953 154 ProSitePatterns PS01317 SsrA-binding protein. 21 33 - T 12-10-2018 IPR020081 SsrA-binding protein, conserved site ALFP_2688 c81178184b054282a9d5c22d77a635c6 220 SMART SM00382 27 213 9.0E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2688 c81178184b054282a9d5c22d77a635c6 220 SUPERFAMILY SSF52540 2 213 2.18E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2688 c81178184b054282a9d5c22d77a635c6 220 Pfam PF00005 ABC transporter 18 162 8.7E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2688 c81178184b054282a9d5c22d77a635c6 220 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_2688 c81178184b054282a9d5c22d77a635c6 220 Gene3D G3DSA:3.40.50.300 1 217 4.0E-51 T 12-10-2018 ALFP_0367 86e3d013e27ef8af3793f7b148d1d81d 511 SUPERFAMILY SSF51735 1 186 3.95E-56 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0367 86e3d013e27ef8af3793f7b148d1d81d 511 SUPERFAMILY SSF48179 415 499 8.42E-17 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_0367 86e3d013e27ef8af3793f7b148d1d81d 511 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 415 499 6.2E-17 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 ALFP_0367 86e3d013e27ef8af3793f7b148d1d81d 511 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 187 284 1.1E-21 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 ALFP_0367 86e3d013e27ef8af3793f7b148d1d81d 511 SUPERFAMILY SSF48179 186 296 4.42E-27 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_0367 86e3d013e27ef8af3793f7b148d1d81d 511 Gene3D G3DSA:3.30.750.190 290 412 1.2E-84 T 12-10-2018 ALFP_0367 86e3d013e27ef8af3793f7b148d1d81d 511 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 6 184 1.6E-61 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 ALFP_0367 86e3d013e27ef8af3793f7b148d1d81d 511 Gene3D G3DSA:1.10.1040.50 190 496 1.2E-84 T 12-10-2018 ALFP_0367 86e3d013e27ef8af3793f7b148d1d81d 511 Gene3D G3DSA:3.40.50.720 1 189 2.0E-67 T 12-10-2018 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 77 635 3.7E-215 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 SUPERFAMILY SSF52954 534 638 2.87E-29 T 12-10-2018 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 Pfam PF02824 TGS domain 2 66 2.3E-7 T 12-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 SUPERFAMILY SSF81271 2 66 2.19E-10 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 Gene3D G3DSA:3.40.50.800 536 640 4.3E-29 T 12-10-2018 IPR036621 Anticodon-binding domain superfamily ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 322 533 2.2E-40 T 12-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 174 223 2.0E-15 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 71 638 34.0 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 Gene3D G3DSA:3.10.20.30 1 67 3.2E-17 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 Gene3D G3DSA:3.30.54.20 135 191 1.4E-64 T 12-10-2018 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 SUPERFAMILY SSF55186 69 245 1.14E-66 T 12-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 Gene3D G3DSA:3.30.980.10 74 226 1.4E-64 T 12-10-2018 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 Gene3D G3DSA:3.30.930.10 227 535 7.5E-125 T 12-10-2018 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 Pfam PF03129 Anticodon binding domain 545 634 2.6E-18 T 12-10-2018 IPR004154 Anticodon-binding ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 SUPERFAMILY SSF55681 247 530 1.15E-98 T 12-10-2018 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 333 361 4.1E-52 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 366 389 4.1E-52 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 511 524 4.1E-52 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 538 550 4.1E-52 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 468 496 4.1E-52 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 ALFP_1696 ec8fdb0a4f6f319c919a7039dc0612c0 640 SMART SM00863 174 223 1.1E-25 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 ALFP_3421 d733d64702cce042a4eeaa2391f4cae2 261 Pfam PF02405 Permease MlaE 47 258 3.4E-75 T 12-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 ALFP_3421 d733d64702cce042a4eeaa2391f4cae2 261 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 11 260 5.8E-80 T 12-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria ALFP_0927 4d4a577bd7bb070845b456c004e19229 489 Pfam PF13396 Phospholipase_D-nuclease N-terminal 31 67 1.6E-5 T 12-10-2018 IPR027379 Cardiolipin synthase N-terminal ALFP_0927 4d4a577bd7bb070845b456c004e19229 489 SUPERFAMILY SSF56024 111 321 5.16E-49 T 12-10-2018 ALFP_0927 4d4a577bd7bb070845b456c004e19229 489 Gene3D G3DSA:3.30.870.10 119 311 7.5E-42 T 12-10-2018 ALFP_0927 4d4a577bd7bb070845b456c004e19229 489 SMART SM00155 224 251 3.5 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 ALFP_0927 4d4a577bd7bb070845b456c004e19229 489 SMART SM00155 402 429 2.1E-6 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 ALFP_0927 4d4a577bd7bb070845b456c004e19229 489 Pfam PF13091 PLD-like domain 336 453 1.9E-25 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 ALFP_0927 4d4a577bd7bb070845b456c004e19229 489 Pfam PF13091 PLD-like domain 141 284 1.2E-16 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 ALFP_0927 4d4a577bd7bb070845b456c004e19229 489 Gene3D G3DSA:3.30.870.10 312 482 4.8E-26 T 12-10-2018 ALFP_0927 4d4a577bd7bb070845b456c004e19229 489 PIRSF PIRSF000850 373 464 0.0012 T 12-10-2018 ALFP_0927 4d4a577bd7bb070845b456c004e19229 489 PIRSF PIRSF000850 116 199 0.0051 T 12-10-2018 ALFP_0927 4d4a577bd7bb070845b456c004e19229 489 PIRSF PIRSF000850 322 377 0.53 T 12-10-2018 ALFP_0927 4d4a577bd7bb070845b456c004e19229 489 SUPERFAMILY SSF56024 276 470 1.5E-43 T 12-10-2018 ALFP_2576 9f11ba5610ef84c73832b536dbd89f29 177 Pfam PF10993 Protein of unknown function (DUF2818) 106 170 1.2E-19 T 12-10-2018 IPR016768 Uncharacterised conserved protein UCP019883, membrane ALFP_2576 9f11ba5610ef84c73832b536dbd89f29 177 Pfam PF10993 Protein of unknown function (DUF2818) 6 65 1.1E-5 T 12-10-2018 IPR016768 Uncharacterised conserved protein UCP019883, membrane ALFP_1586 307cd2cc78b1b31452c39d9707800692 90 Gene3D G3DSA:3.10.20.30 1 90 1.2E-25 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_1586 307cd2cc78b1b31452c39d9707800692 90 SUPERFAMILY SSF54285 1 90 1.08E-20 T 12-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp ALFP_1586 307cd2cc78b1b31452c39d9707800692 90 Pfam PF02597 ThiS family 5 90 1.1E-17 T 12-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 ALFP_1534 687424d01e99c2c4b791b81bbcfe1944 570 Gene3D G3DSA:1.20.140.10 304 461 2.2E-38 T 12-10-2018 ALFP_1534 687424d01e99c2c4b791b81bbcfe1944 570 Gene3D G3DSA:2.40.110.20 142 303 1.4E-41 T 12-10-2018 ALFP_1534 687424d01e99c2c4b791b81bbcfe1944 570 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 303 458 2.2E-32 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 ALFP_1534 687424d01e99c2c4b791b81bbcfe1944 570 SUPERFAMILY SSF56645 72 293 7.75E-24 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 ALFP_1534 687424d01e99c2c4b791b81bbcfe1944 570 SUPERFAMILY SSF47203 301 462 9.99E-41 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 ALFP_1534 687424d01e99c2c4b791b81bbcfe1944 570 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 191 291 2.0E-10 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 ALFP_1534 687424d01e99c2c4b791b81bbcfe1944 570 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 417 436 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 ALFP_2660 3847b08021f9c422b2ee80df47bb09f1 151 SUPERFAMILY SSF46785 4 136 1.9E-40 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2660 3847b08021f9c422b2ee80df47bb09f1 151 Gene3D G3DSA:1.10.10.10 1 86 5.0E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2660 3847b08021f9c422b2ee80df47bb09f1 151 Pfam PF01475 Ferric uptake regulator family 10 132 5.4E-42 T 12-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 ALFP_2660 3847b08021f9c422b2ee80df47bb09f1 151 Gene3D G3DSA:3.30.1490.190 88 142 1.3E-23 T 12-10-2018 ALFP_1432 bc77123ae12d6a1b0fc9a092c9138701 331 Gene3D G3DSA:3.40.50.150 54 318 2.9E-81 T 12-10-2018 ALFP_1432 bc77123ae12d6a1b0fc9a092c9138701 331 Pfam PF05971 Protein of unknown function (DUF890) 19 318 3.0E-132 T 12-10-2018 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 ALFP_1432 bc77123ae12d6a1b0fc9a092c9138701 331 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 20 320 55.178 T 12-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 ALFP_1432 bc77123ae12d6a1b0fc9a092c9138701 331 SUPERFAMILY SSF53335 58 317 7.16E-31 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_1432 bc77123ae12d6a1b0fc9a092c9138701 331 PIRSF PIRSF029038 9 330 3.2E-154 T 12-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 ALFP_2495 671862efbd1fca0a8612014a2ee4479f 592 Pfam PF16188 C-terminal region of peptidase_M24 532 592 3.7E-25 T 12-10-2018 IPR032416 Peptidase M24, C-terminal domain ALFP_2495 671862efbd1fca0a8612014a2ee4479f 592 SUPERFAMILY SSF53092 8 142 1.1E-10 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal ALFP_2495 671862efbd1fca0a8612014a2ee4479f 592 Gene3D G3DSA:3.90.230.10 303 592 4.4E-95 T 12-10-2018 ALFP_2495 671862efbd1fca0a8612014a2ee4479f 592 Gene3D G3DSA:3.40.350.10 3 148 8.9E-40 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal ALFP_2495 671862efbd1fca0a8612014a2ee4479f 592 Pfam PF16189 Creatinase/Prolidase N-terminal domain 150 307 7.2E-38 T 12-10-2018 ALFP_2495 671862efbd1fca0a8612014a2ee4479f 592 Pfam PF00557 Metallopeptidase family M24 310 520 6.3E-42 T 12-10-2018 IPR000994 Peptidase M24 ALFP_2495 671862efbd1fca0a8612014a2ee4479f 592 Pfam PF01321 Creatinase/Prolidase N-terminal domain 9 139 4.9E-16 T 12-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 ALFP_2495 671862efbd1fca0a8612014a2ee4479f 592 SUPERFAMILY SSF55920 304 558 2.36E-53 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like ALFP_2495 671862efbd1fca0a8612014a2ee4479f 592 Gene3D G3DSA:3.40.350.10 149 302 4.5E-35 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal ALFP_1947 bed1bc4090337fcd6c97d3f8d8198416 298 SUPERFAMILY SSF51735 4 164 5.2E-49 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1947 bed1bc4090337fcd6c97d3f8d8198416 298 SUPERFAMILY SSF48179 165 296 7.48E-39 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_1947 bed1bc4090337fcd6c97d3f8d8198416 298 PIRSF PIRSF000103 1 298 1.5E-83 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 ALFP_1947 bed1bc4090337fcd6c97d3f8d8198416 298 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 7 295 5.0E-125 T 12-10-2018 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|Reactome: R-HSA-70895 ALFP_1947 bed1bc4090337fcd6c97d3f8d8198416 298 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 294 1.0E-35 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 ALFP_1947 bed1bc4090337fcd6c97d3f8d8198416 298 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 163 4.9E-53 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 ALFP_1947 bed1bc4090337fcd6c97d3f8d8198416 298 Gene3D G3DSA:1.10.1040.10 166 298 7.1E-45 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ALFP_1947 bed1bc4090337fcd6c97d3f8d8198416 298 Gene3D G3DSA:3.40.50.720 1 164 1.2E-58 T 12-10-2018 ALFP_1947 bed1bc4090337fcd6c97d3f8d8198416 298 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 7 20 - T 12-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 ALFP_2867 c921d03b2c6a740f08c312a19f55a534 433 Pfam PF00009 Elongation factor Tu GTP binding domain 17 221 6.1E-38 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_2867 c921d03b2c6a740f08c312a19f55a534 433 PRINTS PR00315 GTP-binding elongation factor signature 78 86 1.3E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_2867 c921d03b2c6a740f08c312a19f55a534 433 PRINTS PR00315 GTP-binding elongation factor signature 18 31 1.3E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_2867 c921d03b2c6a740f08c312a19f55a534 433 PRINTS PR00315 GTP-binding elongation factor signature 98 108 1.3E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_2867 c921d03b2c6a740f08c312a19f55a534 433 PRINTS PR00315 GTP-binding elongation factor signature 114 125 1.3E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_2867 c921d03b2c6a740f08c312a19f55a534 433 PRINTS PR00315 GTP-binding elongation factor signature 155 164 1.3E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_2867 c921d03b2c6a740f08c312a19f55a534 433 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 71 86 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site ALFP_2867 c921d03b2c6a740f08c312a19f55a534 433 Gene3D G3DSA:3.40.50.300 5 231 2.2E-61 T 12-10-2018 ALFP_2867 c921d03b2c6a740f08c312a19f55a534 433 Gene3D G3DSA:2.40.30.10 326 430 6.2E-30 T 12-10-2018 ALFP_2867 c921d03b2c6a740f08c312a19f55a534 433 SUPERFAMILY SSF50465 328 430 1.87E-28 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal ALFP_2867 c921d03b2c6a740f08c312a19f55a534 433 Gene3D G3DSA:2.40.30.10 232 322 6.9E-16 T 12-10-2018 ALFP_2867 c921d03b2c6a740f08c312a19f55a534 433 SUPERFAMILY SSF50447 231 320 1.96E-13 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily ALFP_2867 c921d03b2c6a740f08c312a19f55a534 433 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 17 429 1.7E-158 T 12-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 ALFP_2867 c921d03b2c6a740f08c312a19f55a534 433 SUPERFAMILY SSF52540 16 247 1.05E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1404 42ec14bf6f8fc098e0efcb538f2d4be4 218 Gene3D G3DSA:3.40.50.300 1 218 5.5E-77 T 12-10-2018 ALFP_1404 42ec14bf6f8fc098e0efcb538f2d4be4 218 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 12-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 ALFP_1404 42ec14bf6f8fc098e0efcb538f2d4be4 218 SUPERFAMILY SSF52540 1 216 2.83E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1404 42ec14bf6f8fc098e0efcb538f2d4be4 218 Hamap MF_00235 Adenylate kinase [adk]. 1 217 52.715 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 ALFP_1404 42ec14bf6f8fc098e0efcb538f2d4be4 218 TIGRFAM TIGR01351 adk: adenylate kinase 2 215 1.7E-73 T 12-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 ALFP_1404 42ec14bf6f8fc098e0efcb538f2d4be4 218 Pfam PF00406 Adenylate kinase 5 185 3.4E-57 T 12-10-2018 ALFP_1404 42ec14bf6f8fc098e0efcb538f2d4be4 218 PRINTS PR00094 Adenylate kinase signature 32 46 2.2E-34 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 ALFP_1404 42ec14bf6f8fc098e0efcb538f2d4be4 218 PRINTS PR00094 Adenylate kinase signature 4 17 2.2E-34 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 ALFP_1404 42ec14bf6f8fc098e0efcb538f2d4be4 218 PRINTS PR00094 Adenylate kinase signature 156 171 2.2E-34 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 ALFP_1404 42ec14bf6f8fc098e0efcb538f2d4be4 218 PRINTS PR00094 Adenylate kinase signature 81 97 2.2E-34 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 ALFP_1404 42ec14bf6f8fc098e0efcb538f2d4be4 218 PRINTS PR00094 Adenylate kinase signature 173 187 2.2E-34 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 ALFP_1404 42ec14bf6f8fc098e0efcb538f2d4be4 218 Pfam PF05191 Adenylate kinase, active site lid 123 158 1.2E-16 T 12-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 ALFP_1007 5248bcd2adc75b9c2a79583394e7ba2a 334 Gene3D G3DSA:3.30.460.20 6 143 1.7E-11 T 12-10-2018 ALFP_1007 5248bcd2adc75b9c2a79583394e7ba2a 334 Gene3D G3DSA:1.20.58.340 144 255 3.5E-23 T 12-10-2018 ALFP_1007 5248bcd2adc75b9c2a79583394e7ba2a 334 SUPERFAMILY SSF143865 8 259 3.4E-47 T 12-10-2018 ALFP_1007 5248bcd2adc75b9c2a79583394e7ba2a 334 Gene3D G3DSA:1.20.58.340 263 334 6.2E-21 T 12-10-2018 ALFP_1007 5248bcd2adc75b9c2a79583394e7ba2a 334 Pfam PF01544 CorA-like Mg2+ transporter protein 43 330 1.6E-50 T 12-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 ALFP_1007 5248bcd2adc75b9c2a79583394e7ba2a 334 SUPERFAMILY SSF144083 270 331 1.83E-18 T 12-10-2018 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 Gene3D G3DSA:3.40.50.620 14 214 1.4E-63 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 Hamap MF_02004 Valine--tRNA ligase [valS]. 13 950 15.501 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 SUPERFAMILY SSF50677 208 362 4.19E-59 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 885 949 3.6E-20 T 12-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 60 71 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 Gene3D G3DSA:3.90.740.10 215 357 8.6E-51 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 SUPERFAMILY SSF46589 885 949 1.52E-16 T 12-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 Gene3D G3DSA:1.10.287.380 878 950 2.9E-16 T 12-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 Pfam PF08264 Anticodon-binding domain of tRNA 677 830 3.3E-38 T 12-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 TIGRFAM TIGR00422 valS: valine--tRNA ligase 14 931 0.0 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 Gene3D G3DSA:1.10.730.10 587 824 1.1E-69 T 12-10-2018 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 Gene3D G3DSA:3.40.50.620 358 557 6.9E-39 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 SUPERFAMILY SSF52374 13 645 7.98E-136 T 12-10-2018 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 SUPERFAMILY SSF47323 646 900 2.99E-61 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 26 635 3.1E-200 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 PRINTS PR00986 Valyl-tRNA synthetase signature 250 267 1.1E-32 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 PRINTS PR00986 Valyl-tRNA synthetase signature 510 528 1.1E-32 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 PRINTS PR00986 Valyl-tRNA synthetase signature 479 500 1.1E-32 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 PRINTS PR00986 Valyl-tRNA synthetase signature 366 379 1.1E-32 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 ALFP_2231 a46ecbfaf0583746eb0abb09b257391d 950 PRINTS PR00986 Valyl-tRNA synthetase signature 53 64 1.1E-32 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 631 1.7E-198 T 12-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 Gene3D G3DSA:2.40.40.20 686 775 5.0E-7 T 12-10-2018 ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 12-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 Pfam PF01568 Molydopterin dinucleotide binding domain 706 772 6.6E-9 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 1 76 3.0E-20 T 12-10-2018 ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 Gene3D G3DSA:3.40.228.10 347 409 1.5E-18 T 12-10-2018 ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 Gene3D G3DSA:3.40.50.740 282 346 1.5E-18 T 12-10-2018 ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 Gene3D G3DSA:3.40.50.740 488 660 5.0E-18 T 12-10-2018 ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 Gene3D G3DSA:3.10.20.740 1 123 1.6E-41 T 12-10-2018 ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 98 110 - T 12-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 SUPERFAMILY SSF54292 1 124 1.79E-33 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 SUPERFAMILY SSF50692 705 772 1.97E-8 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 SUPERFAMILY SSF53706 214 655 4.23E-83 T 12-10-2018 ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 SMART SM00929 83 123 5.8E-21 T 12-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 Gene3D G3DSA:3.30.70.20 125 205 3.4E-7 T 12-10-2018 ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 83 122 4.8E-17 T 12-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 SUPERFAMILY SSF54862 144 203 9.77E-7 T 12-10-2018 ALFP_2584 3b2739233b78868ec5eafb0ee1b3fedf 776 Pfam PF00384 Molybdopterin oxidoreductase 273 631 2.7E-31 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2253 a09c98d7598f12d1bfe6d8f2ad0368d6 434 Gene3D G3DSA:3.40.50.720 196 360 6.0E-168 T 12-10-2018 ALFP_2253 a09c98d7598f12d1bfe6d8f2ad0368d6 434 Gene3D G3DSA:1.10.285.10 1 370 6.0E-168 T 12-10-2018 ALFP_2253 a09c98d7598f12d1bfe6d8f2ad0368d6 434 SMART SM00839 191 432 9.2E-96 T 12-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 ALFP_2253 a09c98d7598f12d1bfe6d8f2ad0368d6 434 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 109 122 - T 12-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 ALFP_2253 a09c98d7598f12d1bfe6d8f2ad0368d6 434 SUPERFAMILY SSF53223 2 183 1.6E-72 T 12-10-2018 ALFP_2253 a09c98d7598f12d1bfe6d8f2ad0368d6 434 Gene3D G3DSA:3.40.50.10860 42 177 6.0E-168 T 12-10-2018 ALFP_2253 a09c98d7598f12d1bfe6d8f2ad0368d6 434 Gene3D G3DSA:1.10.285.10 371 434 1.1E-8 T 12-10-2018 ALFP_2253 a09c98d7598f12d1bfe6d8f2ad0368d6 434 PIRSF PIRSF000185 9 434 4.7E-115 T 12-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 ALFP_2253 a09c98d7598f12d1bfe6d8f2ad0368d6 434 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 222 242 2.6E-31 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 ALFP_2253 a09c98d7598f12d1bfe6d8f2ad0368d6 434 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 359 370 2.6E-31 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 ALFP_2253 a09c98d7598f12d1bfe6d8f2ad0368d6 434 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 180 202 2.6E-31 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 ALFP_2253 a09c98d7598f12d1bfe6d8f2ad0368d6 434 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 101 115 2.6E-31 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 ALFP_2253 a09c98d7598f12d1bfe6d8f2ad0368d6 434 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 189 432 2.2E-88 T 12-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 ALFP_2253 a09c98d7598f12d1bfe6d8f2ad0368d6 434 SUPERFAMILY SSF51735 189 434 2.57E-78 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2253 a09c98d7598f12d1bfe6d8f2ad0368d6 434 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 44 171 7.8E-50 T 12-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 ALFP_3511 bb36962542e3fce15e9dce7f91cc8f5e 158 SMART SM00344 5 113 6.3E-29 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 ALFP_3511 bb36962542e3fce15e9dce7f91cc8f5e 158 Pfam PF01037 Lrp/AsnC ligand binding domain 70 143 7.4E-12 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain ALFP_3511 bb36962542e3fce15e9dce7f91cc8f5e 158 Gene3D G3DSA:1.10.10.10 5 56 1.5E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3511 bb36962542e3fce15e9dce7f91cc8f5e 158 SUPERFAMILY SSF54909 66 153 1.61E-11 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel ALFP_3511 bb36962542e3fce15e9dce7f91cc8f5e 158 SUPERFAMILY SSF46785 5 63 8.63E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3511 bb36962542e3fce15e9dce7f91cc8f5e 158 Pfam PF13412 Winged helix-turn-helix DNA-binding 5 51 6.8E-17 T 12-10-2018 ALFP_3511 bb36962542e3fce15e9dce7f91cc8f5e 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 2.0E-10 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 ALFP_3511 bb36962542e3fce15e9dce7f91cc8f5e 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 2.0E-10 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 ALFP_3511 bb36962542e3fce15e9dce7f91cc8f5e 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 2.0E-10 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 ALFP_3511 bb36962542e3fce15e9dce7f91cc8f5e 158 Gene3D G3DSA:3.30.70.920 57 141 1.1E-16 T 12-10-2018 ALFP_0731 d06d1816164c11706281f29542f8d467 386 Gene3D G3DSA:3.40.640.10 4 386 9.7E-121 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_0731 d06d1816164c11706281f29542f8d467 386 SUPERFAMILY SSF53383 1 385 1.21E-104 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_0731 d06d1816164c11706281f29542f8d467 386 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 162 186 2.7E-12 T 12-10-2018 ALFP_0731 d06d1816164c11706281f29542f8d467 386 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 93 113 2.7E-12 T 12-10-2018 ALFP_0731 d06d1816164c11706281f29542f8d467 386 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 115 136 2.7E-12 T 12-10-2018 ALFP_0731 d06d1816164c11706281f29542f8d467 386 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 198 221 2.7E-12 T 12-10-2018 ALFP_0731 d06d1816164c11706281f29542f8d467 386 Pfam PF00155 Aminotransferase class I and II 32 379 9.0E-63 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_2671 3afc77e797d20df04dfa35f5fd285e62 550 SUPERFAMILY SSF54373 286 472 2.35E-39 T 12-10-2018 ALFP_2671 3afc77e797d20df04dfa35f5fd285e62 550 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 81 104 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 ALFP_2671 3afc77e797d20df04dfa35f5fd285e62 550 SUPERFAMILY SSF51905 2 530 1.13E-80 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2671 3afc77e797d20df04dfa35f5fd285e62 550 Gene3D G3DSA:1.10.1220.110 96 146 1.4E-161 T 12-10-2018 ALFP_2671 3afc77e797d20df04dfa35f5fd285e62 550 Gene3D G3DSA:3.30.410.40 147 469 1.4E-161 T 12-10-2018 ALFP_2671 3afc77e797d20df04dfa35f5fd285e62 550 Gene3D G3DSA:4.10.450.10 39 192 1.4E-161 T 12-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 ALFP_2671 3afc77e797d20df04dfa35f5fd285e62 550 Gene3D G3DSA:3.50.50.60 5 526 1.4E-161 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2671 3afc77e797d20df04dfa35f5fd285e62 550 PIRSF PIRSF000137 1 536 9.7E-140 T 12-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 ALFP_2671 3afc77e797d20df04dfa35f5fd285e62 550 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 251 265 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 ALFP_2671 3afc77e797d20df04dfa35f5fd285e62 550 Pfam PF00732 GMC oxidoreductase 6 291 1.3E-84 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 ALFP_2671 3afc77e797d20df04dfa35f5fd285e62 550 Pfam PF05199 GMC oxidoreductase 385 522 9.0E-38 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 ALFP_0107 221716c7299df0a5d5eba94f3e159979 396 Gene3D G3DSA:3.90.1150.10 19 384 2.7E-130 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_0107 221716c7299df0a5d5eba94f3e159979 396 Gene3D G3DSA:3.40.640.10 54 297 2.7E-130 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_0107 221716c7299df0a5d5eba94f3e159979 396 SUPERFAMILY SSF53383 15 391 8.84E-114 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_0107 221716c7299df0a5d5eba94f3e159979 396 Pfam PF00202 Aminotransferase class-III 20 391 6.4E-102 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_0107 221716c7299df0a5d5eba94f3e159979 396 PIRSF PIRSF000521 19 394 1.7E-39 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_0107 221716c7299df0a5d5eba94f3e159979 396 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 216 253 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_0107 221716c7299df0a5d5eba94f3e159979 396 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 10 394 64.139 T 12-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 ALFP_2977 a554fc63ebf5fe9e412bc38e9f5a6030 786 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 28 145 6.8E-29 T 12-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead ALFP_2977 a554fc63ebf5fe9e412bc38e9f5a6030 786 Gene3D G3DSA:3.90.1170.50 43 145 1.7E-114 T 12-10-2018 ALFP_2977 a554fc63ebf5fe9e412bc38e9f5a6030 786 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 171 716 1.0E-154 T 12-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 ALFP_2977 a554fc63ebf5fe9e412bc38e9f5a6030 786 Gene3D G3DSA:3.30.365.10 27 297 1.7E-114 T 12-10-2018 ALFP_2977 a554fc63ebf5fe9e412bc38e9f5a6030 786 SMART SM01008 28 145 2.2E-43 T 12-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead ALFP_2977 a554fc63ebf5fe9e412bc38e9f5a6030 786 SUPERFAMILY SSF54665 8 166 3.27E-43 T 12-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily ALFP_2977 a554fc63ebf5fe9e412bc38e9f5a6030 786 Gene3D G3DSA:3.30.365.10 381 756 4.3E-109 T 12-10-2018 ALFP_2977 a554fc63ebf5fe9e412bc38e9f5a6030 786 Gene3D G3DSA:3.30.365.10 146 373 1.7E-114 T 12-10-2018 ALFP_2977 a554fc63ebf5fe9e412bc38e9f5a6030 786 Gene3D G3DSA:3.30.365.10 474 631 4.3E-109 T 12-10-2018 ALFP_2977 a554fc63ebf5fe9e412bc38e9f5a6030 786 SUPERFAMILY SSF56003 137 780 1.96E-172 T 12-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 ALFP_1157 4b50a8a2b9cf6ba2b0f94eb69795a405 128 Pfam PF01124 MAPEG family 8 123 2.4E-21 T 12-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein ALFP_1157 4b50a8a2b9cf6ba2b0f94eb69795a405 128 SUPERFAMILY SSF161084 14 121 2.94E-22 T 12-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily ALFP_1157 4b50a8a2b9cf6ba2b0f94eb69795a405 128 Gene3D G3DSA:1.20.120.550 6 126 2.4E-16 T 12-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily ALFP_0147 0bd242f27c33d5fd94d58b0a3112db53 1189 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 496 522 0.0018 T 12-10-2018 IPR006530 YD repeat ALFP_0147 0bd242f27c33d5fd94d58b0a3112db53 1189 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 503 532 1.5E-5 T 12-10-2018 IPR006530 YD repeat ALFP_0147 0bd242f27c33d5fd94d58b0a3112db53 1189 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 977 1079 1.1E-13 T 12-10-2018 IPR018712 Domain of unknown function DUF2235 ALFP_0147 0bd242f27c33d5fd94d58b0a3112db53 1189 Gene3D G3DSA:2.180.10.10 747 862 1.5E-14 T 12-10-2018 ALFP_0147 0bd242f27c33d5fd94d58b0a3112db53 1189 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 787 862 9.4E-13 T 12-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 ALFP_3136 0a631a0e72d84de83e65d7c285e814e2 417 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 411 46.878 T 12-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 ALFP_3136 0a631a0e72d84de83e65d7c285e814e2 417 SUPERFAMILY SSF54373 269 360 5.62E-14 T 12-10-2018 ALFP_3136 0a631a0e72d84de83e65d7c285e814e2 417 Gene3D G3DSA:3.50.50.60 104 399 5.3E-51 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_3136 0a631a0e72d84de83e65d7c285e814e2 417 Gene3D G3DSA:3.50.50.60 3 53 1.0E-8 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_3136 0a631a0e72d84de83e65d7c285e814e2 417 SUPERFAMILY SSF51905 1 416 4.4E-51 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_3136 0a631a0e72d84de83e65d7c285e814e2 417 Pfam PF01266 FAD dependent oxidoreductase 2 398 1.2E-69 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 ALFP_3136 0a631a0e72d84de83e65d7c285e814e2 417 Gene3D G3DSA:3.30.9.10 134 359 5.3E-51 T 12-10-2018 ALFP_2212 f27327d25782b96b90360816baf6843b 744 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 533 546 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_2212 f27327d25782b96b90360816baf6843b 744 Pfam PF04545 Sigma-70, region 4 677 730 7.6E-19 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 ALFP_2212 f27327d25782b96b90360816baf6843b 744 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 702 728 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_2212 f27327d25782b96b90360816baf6843b 744 PRINTS PR00046 Major sigma-70 factor signature 717 728 7.2E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_2212 f27327d25782b96b90360816baf6843b 744 PRINTS PR00046 Major sigma-70 factor signature 533 546 7.2E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_2212 f27327d25782b96b90360816baf6843b 744 PRINTS PR00046 Major sigma-70 factor signature 681 693 7.2E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_2212 f27327d25782b96b90360816baf6843b 744 PRINTS PR00046 Major sigma-70 factor signature 557 565 7.2E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_2212 f27327d25782b96b90360816baf6843b 744 PRINTS PR00046 Major sigma-70 factor signature 702 717 7.2E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_2212 f27327d25782b96b90360816baf6843b 744 Pfam PF03979 Sigma-70 factor, region 1.1 144 223 2.4E-28 T 12-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 ALFP_2212 f27327d25782b96b90360816baf6843b 744 Gene3D G3DSA:1.10.601.10 255 578 2.7E-122 T 12-10-2018 ALFP_2212 f27327d25782b96b90360816baf6843b 744 Pfam PF04546 Sigma-70, non-essential region 281 478 3.5E-60 T 12-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ALFP_2212 f27327d25782b96b90360816baf6843b 744 Pfam PF04542 Sigma-70 region 2 511 578 8.4E-21 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_2212 f27327d25782b96b90360816baf6843b 744 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 505 730 1.5E-39 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 ALFP_2212 f27327d25782b96b90360816baf6843b 744 Pfam PF04539 Sigma-70 region 3 588 664 4.9E-25 T 12-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 ALFP_2212 f27327d25782b96b90360816baf6843b 744 SUPERFAMILY SSF88659 639 740 2.43E-27 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like ALFP_2212 f27327d25782b96b90360816baf6843b 744 Gene3D G3DSA:1.10.10.10 582 657 2.4E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2212 f27327d25782b96b90360816baf6843b 744 SUPERFAMILY SSF88946 257 576 5.49E-96 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_2212 f27327d25782b96b90360816baf6843b 744 SUPERFAMILY SSF88659 582 656 4.71E-18 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like ALFP_2212 f27327d25782b96b90360816baf6843b 744 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 505 741 1.3E-118 T 12-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 ALFP_2212 f27327d25782b96b90360816baf6843b 744 Pfam PF00140 Sigma-70 factor, region 1.2 240 272 4.6E-14 T 12-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ALFP_2212 f27327d25782b96b90360816baf6843b 744 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 136 742 41.474 T 12-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 ALFP_2212 f27327d25782b96b90360816baf6843b 744 Gene3D G3DSA:1.10.220.120 141 204 1.1E-26 T 12-10-2018 ALFP_2212 f27327d25782b96b90360816baf6843b 744 Gene3D G3DSA:1.10.10.10 659 743 5.4E-35 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0020 26ed5db87523e9339c62df622a23b0e7 369 Pfam PF03060 Nitronate monooxygenase 10 348 5.1E-46 T 12-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 ALFP_0020 26ed5db87523e9339c62df622a23b0e7 369 Gene3D G3DSA:3.20.20.70 4 361 6.5E-80 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0020 26ed5db87523e9339c62df622a23b0e7 369 SUPERFAMILY SSF51412 4 358 3.36E-41 T 12-10-2018 ALFP_2518 a6b345ae43b198166f6e1904a1279344 252 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 8 219 2.2E-69 T 12-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 ALFP_2518 a6b345ae43b198166f6e1904a1279344 252 SUPERFAMILY SSF69065 3 156 1.31E-47 T 12-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 ALFP_2518 a6b345ae43b198166f6e1904a1279344 252 Gene3D G3DSA:3.30.160.20 152 223 2.2E-16 T 12-10-2018 ALFP_2518 a6b345ae43b198166f6e1904a1279344 252 Pfam PF14622 Ribonuclease-III-like 18 136 2.4E-36 T 12-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 ALFP_2518 a6b345ae43b198166f6e1904a1279344 252 Pfam PF00035 Double-stranded RNA binding motif 154 221 2.8E-9 T 12-10-2018 IPR014720 Double-stranded RNA-binding domain ALFP_2518 a6b345ae43b198166f6e1904a1279344 252 SUPERFAMILY SSF54768 107 221 1.4E-25 T 12-10-2018 ALFP_2518 a6b345ae43b198166f6e1904a1279344 252 Gene3D G3DSA:1.10.1520.10 1 145 5.2E-45 T 12-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 ALFP_2518 a6b345ae43b198166f6e1904a1279344 252 SMART SM00358 154 222 1.9E-17 T 12-10-2018 IPR014720 Double-stranded RNA-binding domain ALFP_2518 a6b345ae43b198166f6e1904a1279344 252 ProSitePatterns PS00517 Ribonuclease III family signature. 36 44 - T 12-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 ALFP_2518 a6b345ae43b198166f6e1904a1279344 252 SMART SM00535 19 147 1.3E-51 T 12-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 ALFP_2518 a6b345ae43b198166f6e1904a1279344 252 Hamap MF_00104 Ribonuclease 3 [rnc]. 7 218 29.046 T 12-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 ALFP_1949 7712b1e5c7b85f16f7c610149f3a3099 382 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 121 133 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 ALFP_1949 7712b1e5c7b85f16f7c610149f3a3099 382 PIRSF PIRSF016578 2 191 1.2E-8 T 12-10-2018 ALFP_1949 7712b1e5c7b85f16f7c610149f3a3099 382 PIRSF PIRSF016578 209 379 8.9E-10 T 12-10-2018 ALFP_1949 7712b1e5c7b85f16f7c610149f3a3099 382 Gene3D G3DSA:1.20.140.10 230 377 7.7E-49 T 12-10-2018 ALFP_1949 7712b1e5c7b85f16f7c610149f3a3099 382 SUPERFAMILY SSF56645 2 238 2.62E-79 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 ALFP_1949 7712b1e5c7b85f16f7c610149f3a3099 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 113 1.7E-27 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 ALFP_1949 7712b1e5c7b85f16f7c610149f3a3099 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 119 213 3.7E-24 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 ALFP_1949 7712b1e5c7b85f16f7c610149f3a3099 382 Gene3D G3DSA:1.10.540.10 1 117 3.3E-32 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 ALFP_1949 7712b1e5c7b85f16f7c610149f3a3099 382 Gene3D G3DSA:2.40.110.10 119 229 1.4E-42 T 12-10-2018 ALFP_1949 7712b1e5c7b85f16f7c610149f3a3099 382 SUPERFAMILY SSF47203 223 377 3.7E-53 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 ALFP_1949 7712b1e5c7b85f16f7c610149f3a3099 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 333 352 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 ALFP_1949 7712b1e5c7b85f16f7c610149f3a3099 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 225 374 8.2E-44 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 ALFP_2448 e3923e34c2a0579c758e310988a85b60 105 Pfam PF02410 Ribosomal silencing factor during starvation 4 75 1.0E-18 T 12-10-2018 ALFP_2448 e3923e34c2a0579c758e310988a85b60 105 SUPERFAMILY SSF81301 3 80 3.76E-27 T 12-10-2018 ALFP_2448 e3923e34c2a0579c758e310988a85b60 105 Gene3D G3DSA:3.30.460.10 1 87 3.9E-27 T 12-10-2018 ALFP_2448 e3923e34c2a0579c758e310988a85b60 105 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 3 75 1.4E-26 T 12-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 Gene3D G3DSA:1.20.58.1480 124 248 3.6E-43 T 12-10-2018 ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 13 203 2.9E-40 T 12-10-2018 IPR003111 Lon, substrate-binding domain ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 SMART SM00382 350 494 2.7E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 TIGRFAM TIGR00763 lon: endopeptidase La 15 786 4.3E-297 T 12-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 SMART SM00464 13 205 8.6E-74 T 12-10-2018 IPR003111 Lon, substrate-binding domain ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 Gene3D G3DSA:1.10.8.60 493 599 1.6E-28 T 12-10-2018 ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 SUPERFAMILY SSF88697 13 204 2.09E-51 T 12-10-2018 IPR015947 PUA-like superfamily ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 691 699 - T 12-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 PIRSF PIRSF001174 2 790 0.0 T 12-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 Hamap MF_01973 Lon protease [lon]. 14 787 69.313 T 12-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 354 491 6.4E-18 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 Gene3D G3DSA:3.30.230.10 600 787 4.5E-80 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 585 787 1.8E-94 T 12-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 SUPERFAMILY SSF54211 610 785 5.31E-57 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 Gene3D G3DSA:3.40.50.300 316 492 6.7E-63 T 12-10-2018 ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 688 707 2.2E-55 T 12-10-2018 ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 741 759 2.2E-55 T 12-10-2018 ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 358 377 2.2E-55 T 12-10-2018 ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 718 737 2.2E-55 T 12-10-2018 ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 610 626 2.2E-55 T 12-10-2018 ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 SUPERFAMILY SSF52540 316 601 1.2E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1474 3dcfe42bfe1456556f03883c24a87f07 821 Gene3D G3DSA:2.30.130.40 3 120 2.9E-36 T 12-10-2018 ALFP_0588 ebe3f06b7d86824d29c61659dbad919b 132 Pfam PF03928 Haem-degrading 7 129 9.0E-31 T 12-10-2018 IPR005624 Haem-degrading ALFP_0588 ebe3f06b7d86824d29c61659dbad919b 132 Gene3D G3DSA:3.30.450.150 1 132 8.4E-39 T 12-10-2018 IPR038084 GlcG-like domain superfamily ALFP_0588 ebe3f06b7d86824d29c61659dbad919b 132 SUPERFAMILY SSF143744 4 132 3.01E-35 T 12-10-2018 IPR038084 GlcG-like domain superfamily ALFP_1098 85d1a09765bd3ff03855cf8fa105a98c 621 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 5 616 45.381 T 12-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 ALFP_1098 85d1a09765bd3ff03855cf8fa105a98c 621 ProSitePatterns PS00802 Transketolase signature 2. 421 437 - T 12-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 ALFP_1098 85d1a09765bd3ff03855cf8fa105a98c 621 Gene3D G3DSA:3.40.50.970 314 490 1.5E-65 T 12-10-2018 ALFP_1098 85d1a09765bd3ff03855cf8fa105a98c 621 SMART SM00861 315 479 2.4E-62 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain ALFP_1098 85d1a09765bd3ff03855cf8fa105a98c 621 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 6 278 3.2E-118 T 12-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 ALFP_1098 85d1a09765bd3ff03855cf8fa105a98c 621 Gene3D G3DSA:3.40.50.920 491 617 1.7E-43 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 ALFP_1098 85d1a09765bd3ff03855cf8fa105a98c 621 SUPERFAMILY SSF52922 487 615 9.16E-34 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 ALFP_1098 85d1a09765bd3ff03855cf8fa105a98c 621 SUPERFAMILY SSF52518 6 377 3.54E-74 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_1098 85d1a09765bd3ff03855cf8fa105a98c 621 SUPERFAMILY SSF52518 313 500 2.9E-58 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_1098 85d1a09765bd3ff03855cf8fa105a98c 621 ProSitePatterns PS00801 Transketolase signature 1. 31 50 - T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 ALFP_1098 85d1a09765bd3ff03855cf8fa105a98c 621 Pfam PF02780 Transketolase, C-terminal domain 491 607 1.6E-29 T 12-10-2018 IPR033248 Transketolase, C-terminal domain ALFP_1098 85d1a09765bd3ff03855cf8fa105a98c 621 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 7 613 1.2E-261 T 12-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 ALFP_1098 85d1a09765bd3ff03855cf8fa105a98c 621 Pfam PF02779 Transketolase, pyrimidine binding domain 316 474 8.2E-37 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain ALFP_1787 35bda6d40fa65c4a85288dd954a6b87e 141 Pfam PF13554 Bacteriophage related domain of unknown function 8 137 8.3E-32 T 12-10-2018 IPR025395 Protein of unknown function DUF4128 ALFP_1787 35bda6d40fa65c4a85288dd954a6b87e 141 Gene3D G3DSA:3.30.2000.20 2 140 1.6E-15 T 12-10-2018 ALFP_2080 35423f3edfce29ce5f30802cfe25ab04 323 Gene3D G3DSA:3.90.1200.10 106 319 6.0E-71 T 12-10-2018 ALFP_2080 35423f3edfce29ce5f30802cfe25ab04 323 Hamap MF_00301 Homoserine kinase [thrB]. 1 323 148.575 T 12-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 ALFP_2080 35423f3edfce29ce5f30802cfe25ab04 323 TIGRFAM TIGR00938 thrB_alt: homoserine kinase 1 311 5.3E-96 T 12-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 ALFP_2080 35423f3edfce29ce5f30802cfe25ab04 323 Pfam PF01636 Phosphotransferase enzyme family 27 261 3.3E-28 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase ALFP_2080 35423f3edfce29ce5f30802cfe25ab04 323 Gene3D G3DSA:3.30.200.20 1 102 1.6E-35 T 12-10-2018 ALFP_2080 35423f3edfce29ce5f30802cfe25ab04 323 SUPERFAMILY SSF56112 6 315 2.48E-73 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily ALFP_0301 bfba3099ec957eb15b4c2c2e993aae00 254 Gene3D G3DSA:3.40.50.300 1 247 1.8E-60 T 12-10-2018 ALFP_0301 bfba3099ec957eb15b4c2c2e993aae00 254 SUPERFAMILY SSF52540 1 226 5.16E-70 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0301 bfba3099ec957eb15b4c2c2e993aae00 254 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0301 bfba3099ec957eb15b4c2c2e993aae00 254 Pfam PF00005 ABC transporter 22 161 3.4E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0301 bfba3099ec957eb15b4c2c2e993aae00 254 SMART SM00382 31 224 5.4E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0667 3f142692b2975bfad59aeca9de653009 83 Pfam PF11390 NADH-dependant formate dehydrogenase delta subunit FdsD 6 71 6.6E-23 T 12-10-2018 IPR021074 Formate dehydrogenase, delta subunit ALFP_2845 4f23b1525944782daffc75619c635473 436 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 20 431 44.506 T 12-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 ALFP_2845 4f23b1525944782daffc75619c635473 436 Gene3D G3DSA:2.120.10.30 173 436 5.7E-87 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like ALFP_2845 4f23b1525944782daffc75619c635473 436 Pfam PF07676 WD40-like Beta Propeller Repeat 330 363 5.6E-5 T 12-10-2018 IPR011659 WD40-like Beta Propeller ALFP_2845 4f23b1525944782daffc75619c635473 436 Pfam PF07676 WD40-like Beta Propeller Repeat 373 403 0.076 T 12-10-2018 IPR011659 WD40-like Beta Propeller ALFP_2845 4f23b1525944782daffc75619c635473 436 Pfam PF07676 WD40-like Beta Propeller Repeat 207 232 1.7E-6 T 12-10-2018 IPR011659 WD40-like Beta Propeller ALFP_2845 4f23b1525944782daffc75619c635473 436 Pfam PF07676 WD40-like Beta Propeller Repeat 242 277 6.1E-4 T 12-10-2018 IPR011659 WD40-like Beta Propeller ALFP_2845 4f23b1525944782daffc75619c635473 436 Pfam PF07676 WD40-like Beta Propeller Repeat 285 320 1.5E-10 T 12-10-2018 IPR011659 WD40-like Beta Propeller ALFP_2845 4f23b1525944782daffc75619c635473 436 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 29 432 1.5E-150 T 12-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 ALFP_2845 4f23b1525944782daffc75619c635473 436 Gene3D G3DSA:3.40.50.10070 35 172 1.8E-35 T 12-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 ALFP_2845 4f23b1525944782daffc75619c635473 436 SUPERFAMILY SSF52964 47 169 1.83E-30 T 12-10-2018 ALFP_2845 4f23b1525944782daffc75619c635473 436 SUPERFAMILY SSF69304 162 433 7.45E-55 T 12-10-2018 ALFP_2845 4f23b1525944782daffc75619c635473 436 Pfam PF04052 TolB amino-terminal domain 39 137 5.0E-23 T 12-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 ALFP_0636 721732a226f26370e355b99a14c08d2b 178 Pfam PF04115 Ureidoglycolate lyase 6 136 1.4E-13 T 12-10-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 ALFP_0636 721732a226f26370e355b99a14c08d2b 178 Gene3D G3DSA:2.60.120.480 5 165 2.1E-23 T 12-10-2018 IPR024060 Ureidoglycolate lyase domain superfamily GO:0004848 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 ALFP_0636 721732a226f26370e355b99a14c08d2b 178 SUPERFAMILY SSF51182 6 165 1.02E-28 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_3316 edb8f295f8f52855b3ec67058c143d74 757 Pfam PF07660 Secretin and TonB N terminus short domain 23 71 8.5E-11 T 12-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 ALFP_3316 edb8f295f8f52855b3ec67058c143d74 757 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 116 757 5.2E-97 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 ALFP_3316 edb8f295f8f52855b3ec67058c143d74 757 Pfam PF00593 TonB dependent receptor 318 755 5.0E-44 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_3316 edb8f295f8f52855b3ec67058c143d74 757 SUPERFAMILY SSF56935 77 757 2.38E-117 T 12-10-2018 ALFP_3316 edb8f295f8f52855b3ec67058c143d74 757 Pfam PF07715 TonB-dependent Receptor Plug Domain 114 214 2.9E-14 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_3316 edb8f295f8f52855b3ec67058c143d74 757 Gene3D G3DSA:2.170.130.10 93 222 3.2E-36 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_3316 edb8f295f8f52855b3ec67058c143d74 757 Gene3D G3DSA:2.40.170.20 225 757 2.9E-158 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_3316 edb8f295f8f52855b3ec67058c143d74 757 Gene3D G3DSA:3.55.50.30 1 92 5.0E-25 T 12-10-2018 ALFP_3316 edb8f295f8f52855b3ec67058c143d74 757 SMART SM00965 23 73 2.2E-12 T 12-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 ALFP_1817 e8935131d33f9bdba96e4584e6bfe342 452 Gene3D G3DSA:1.10.760.10 162 311 6.5E-7 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1817 e8935131d33f9bdba96e4584e6bfe342 452 Gene3D G3DSA:1.10.760.10 2 155 5.4E-11 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1817 e8935131d33f9bdba96e4584e6bfe342 452 Pfam PF00034 Cytochrome c 49 146 1.7E-5 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_1817 e8935131d33f9bdba96e4584e6bfe342 452 Pfam PF00034 Cytochrome c 334 417 3.5E-9 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_1817 e8935131d33f9bdba96e4584e6bfe342 452 SUPERFAMILY SSF46626 43 171 1.37E-18 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1817 e8935131d33f9bdba96e4584e6bfe342 452 SUPERFAMILY SSF46626 192 304 1.73E-15 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1817 e8935131d33f9bdba96e4584e6bfe342 452 Gene3D G3DSA:1.10.760.10 314 442 2.6E-32 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1817 e8935131d33f9bdba96e4584e6bfe342 452 PIRSF PIRSF000018 19 450 1.0E-145 T 12-10-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 ALFP_1817 e8935131d33f9bdba96e4584e6bfe342 452 SUPERFAMILY SSF46626 334 435 1.5E-23 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0811 5851cbdc071b9bf04bf63217f13fec12 336 SUPERFAMILY SSF55021 260 334 6.64E-14 T 12-10-2018 ALFP_0811 5851cbdc071b9bf04bf63217f13fec12 336 SMART SM00382 30 217 2.6E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0811 5851cbdc071b9bf04bf63217f13fec12 336 Gene3D G3DSA:3.30.70.260 249 335 1.2E-13 T 12-10-2018 ALFP_0811 5851cbdc071b9bf04bf63217f13fec12 336 Pfam PF09383 NIL domain 262 333 9.5E-19 T 12-10-2018 IPR018449 NIL domain ALFP_0811 5851cbdc071b9bf04bf63217f13fec12 336 Gene3D G3DSA:3.40.50.300 1 248 6.9E-79 T 12-10-2018 ALFP_0811 5851cbdc071b9bf04bf63217f13fec12 336 SMART SM00930 259 334 4.3E-17 T 12-10-2018 IPR018449 NIL domain ALFP_0811 5851cbdc071b9bf04bf63217f13fec12 336 Pfam PF00005 ABC transporter 21 169 4.4E-37 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0811 5851cbdc071b9bf04bf63217f13fec12 336 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0811 5851cbdc071b9bf04bf63217f13fec12 336 SUPERFAMILY SSF52540 1 240 4.8E-87 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2350 428593b643bb7fa50361eb8f6dfdceb2 217 Gene3D G3DSA:2.30.110.10 1 208 3.1E-63 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 ALFP_2350 428593b643bb7fa50361eb8f6dfdceb2 217 SUPERFAMILY SSF50475 12 186 1.31E-36 T 12-10-2018 ALFP_2350 428593b643bb7fa50361eb8f6dfdceb2 217 Pfam PF04299 Putative FMN-binding domain 1 168 2.1E-62 T 12-10-2018 IPR007396 Transcriptional regulator PAI 2-type ALFP_2350 428593b643bb7fa50361eb8f6dfdceb2 217 PIRSF PIRSF010372 1 212 2.2E-76 T 12-10-2018 IPR007396 Transcriptional regulator PAI 2-type ALFP_0614 f8c7ee29abbac27bf11a3bce143b008b 557 Gene3D G3DSA:3.50.50.60 25 359 3.0E-87 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0614 f8c7ee29abbac27bf11a3bce143b008b 557 SUPERFAMILY SSF51905 24 395 1.02E-57 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0614 f8c7ee29abbac27bf11a3bce143b008b 557 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 312 328 2.6E-34 T 12-10-2018 ALFP_0614 f8c7ee29abbac27bf11a3bce143b008b 557 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 24 46 2.6E-34 T 12-10-2018 ALFP_0614 f8c7ee29abbac27bf11a3bce143b008b 557 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 330 348 2.6E-34 T 12-10-2018 ALFP_0614 f8c7ee29abbac27bf11a3bce143b008b 557 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 172 187 2.6E-34 T 12-10-2018 ALFP_0614 f8c7ee29abbac27bf11a3bce143b008b 557 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 348 364 2.6E-34 T 12-10-2018 ALFP_0614 f8c7ee29abbac27bf11a3bce143b008b 557 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 297 312 2.6E-34 T 12-10-2018 ALFP_0614 f8c7ee29abbac27bf11a3bce143b008b 557 Pfam PF01494 FAD binding domain 24 361 8.8E-62 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 ALFP_0614 f8c7ee29abbac27bf11a3bce143b008b 557 Gene3D G3DSA:3.30.70.2450 201 286 3.0E-87 T 12-10-2018 ALFP_0614 f8c7ee29abbac27bf11a3bce143b008b 557 Gene3D G3DSA:3.40.30.120 401 551 9.1E-13 T 12-10-2018 ALFP_3329 cb9c7e585ed83bd01b353c6c848b7bbe 468 SMART SM00388 241 306 1.0E-8 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_3329 cb9c7e585ed83bd01b353c6c848b7bbe 468 SMART SM00387 356 467 3.4E-28 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_3329 cb9c7e585ed83bd01b353c6c848b7bbe 468 Pfam PF08521 Two-component sensor kinase N-terminal 20 163 7.9E-24 T 12-10-2018 IPR013727 Two-component sensor kinase, N-terminal ALFP_3329 cb9c7e585ed83bd01b353c6c848b7bbe 468 Gene3D G3DSA:3.30.565.10 316 465 8.8E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_3329 cb9c7e585ed83bd01b353c6c848b7bbe 468 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 361 462 1.0E-17 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_3329 cb9c7e585ed83bd01b353c6c848b7bbe 468 Gene3D G3DSA:1.10.287.130 192 308 3.0E-15 T 12-10-2018 ALFP_3329 cb9c7e585ed83bd01b353c6c848b7bbe 468 SUPERFAMILY SSF55874 319 460 1.13E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_3329 cb9c7e585ed83bd01b353c6c848b7bbe 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 426 444 1.5E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3329 cb9c7e585ed83bd01b353c6c848b7bbe 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 407 1.5E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3329 cb9c7e585ed83bd01b353c6c848b7bbe 468 SUPERFAMILY SSF47384 224 303 2.55E-12 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_3329 cb9c7e585ed83bd01b353c6c848b7bbe 468 Pfam PF00512 His Kinase A (phospho-acceptor) domain 242 303 7.7E-8 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_2612 631ce1c0ea92224bcbcf5b397bdab35c 774 SUPERFAMILY SSF46785 704 768 1.05E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2612 631ce1c0ea92224bcbcf5b397bdab35c 774 SUPERFAMILY SSF52540 373 669 7.04E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2612 631ce1c0ea92224bcbcf5b397bdab35c 774 Gene3D G3DSA:3.40.50.300 385 682 1.9E-117 T 12-10-2018 ALFP_2612 631ce1c0ea92224bcbcf5b397bdab35c 774 Gene3D G3DSA:3.30.980.40 280 384 8.0E-33 T 12-10-2018 ALFP_2612 631ce1c0ea92224bcbcf5b397bdab35c 774 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 15 197 3.5E-38 T 12-10-2018 IPR025199 DNA translocase FtsK, 4TM region ALFP_2612 631ce1c0ea92224bcbcf5b397bdab35c 774 SMART SM00382 423 618 7.7E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2612 631ce1c0ea92224bcbcf5b397bdab35c 774 Pfam PF01580 FtsK/SpoIIIE family 388 597 5.7E-67 T 12-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 ALFP_2612 631ce1c0ea92224bcbcf5b397bdab35c 774 Gene3D G3DSA:1.10.10.10 700 764 3.1E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2612 631ce1c0ea92224bcbcf5b397bdab35c 774 Pfam PF09397 Ftsk gamma domain 705 765 5.0E-26 T 12-10-2018 IPR018541 FtsK gamma domain ALFP_2612 631ce1c0ea92224bcbcf5b397bdab35c 774 SMART SM00843 703 768 4.2E-37 T 12-10-2018 IPR018541 FtsK gamma domain ALFP_2280 c895dd4b83f05a4b98963de3975341e6 275 TIGRFAM TIGR03138 QueF: queuine synthase 7 275 2.4E-114 T 12-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 ALFP_2280 c895dd4b83f05a4b98963de3975341e6 275 SUPERFAMILY SSF55620 180 260 1.93E-9 T 12-10-2018 ALFP_2280 c895dd4b83f05a4b98963de3975341e6 275 PIRSF PIRSF004750 3 275 1.3E-112 T 12-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 ALFP_2280 c895dd4b83f05a4b98963de3975341e6 275 Gene3D G3DSA:3.30.1130.10 138 275 1.4E-54 T 12-10-2018 ALFP_2280 c895dd4b83f05a4b98963de3975341e6 275 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 275 134.87 T 12-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 ALFP_2280 c895dd4b83f05a4b98963de3975341e6 275 Pfam PF14489 QueF-like protein 189 264 1.0E-23 T 12-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 ALFP_2280 c895dd4b83f05a4b98963de3975341e6 275 Gene3D G3DSA:3.30.1130.10 18 132 1.0E-39 T 12-10-2018 ALFP_2280 c895dd4b83f05a4b98963de3975341e6 275 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 18 125 3.0E-41 T 12-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 ALFP_0818 095cdb136688f858969c3791dc8d5a2c 236 SUPERFAMILY SSF53448 1 230 1.06E-53 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_0818 095cdb136688f858969c3791dc8d5a2c 236 Gene3D G3DSA:3.90.550.10 1 232 6.2E-54 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_0818 095cdb136688f858969c3791dc8d5a2c 236 Pfam PF00483 Nucleotidyl transferase 3 230 3.1E-24 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 ALFP_0143 3c0b1318f7394b65551ea94e58c609d7 398 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 9 394 1.1E-112 T 12-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 ALFP_0143 3c0b1318f7394b65551ea94e58c609d7 398 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 24 393 1.3E-100 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 ALFP_0143 3c0b1318f7394b65551ea94e58c609d7 398 PIRSF PIRSF001434 1 396 5.6E-120 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 ALFP_0143 3c0b1318f7394b65551ea94e58c609d7 398 Gene3D G3DSA:3.90.1150.10 264 396 9.9E-37 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_0143 3c0b1318f7394b65551ea94e58c609d7 398 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 206 220 - T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 ALFP_0143 3c0b1318f7394b65551ea94e58c609d7 398 SUPERFAMILY SSF53383 44 394 8.61E-91 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_0143 3c0b1318f7394b65551ea94e58c609d7 398 Gene3D G3DSA:3.40.640.10 3 263 7.8E-68 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_3721 35526af1bb356c0e3f642b83ca5f20c7 249 Gene3D G3DSA:3.40.50.1820 1 241 6.3E-59 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_3721 35526af1bb356c0e3f642b83ca5f20c7 249 Pfam PF12697 Alpha/beta hydrolase family 10 235 1.6E-18 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_3721 35526af1bb356c0e3f642b83ca5f20c7 249 SUPERFAMILY SSF53474 2 245 1.17E-40 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1739 429f3d0094f7436c41450d4858044b92 532 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 78 450 6.6E-74 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain ALFP_1739 429f3d0094f7436c41450d4858044b92 532 Gene3D G3DSA:3.40.190.10 65 284 2.0E-84 T 12-10-2018 ALFP_1739 429f3d0094f7436c41450d4858044b92 532 PIRSF PIRSF002741 15 531 5.7E-60 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 ALFP_1739 429f3d0094f7436c41450d4858044b92 532 SUPERFAMILY SSF53850 35 526 2.71E-96 T 12-10-2018 ALFP_1739 429f3d0094f7436c41450d4858044b92 532 Gene3D G3DSA:3.10.105.10 285 502 2.0E-84 T 12-10-2018 ALFP_2435 58d3210bccb140ac81c0e034b77bc910 121 Gene3D G3DSA:4.10.430.10 74 121 2.5E-17 T 12-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 ALFP_2435 58d3210bccb140ac81c0e034b77bc910 121 SUPERFAMILY SSF81273 79 120 2.31E-11 T 12-10-2018 ALFP_2435 58d3210bccb140ac81c0e034b77bc910 121 SMART SM00528 76 120 3.0E-13 T 12-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 ALFP_2435 58d3210bccb140ac81c0e034b77bc910 121 Pfam PF00816 H-NS histone family 18 114 6.1E-23 T 12-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 ALFP_2695 5e5488677dafa34a0bacc28c0038ebe1 471 Gene3D G3DSA:3.40.50.300 220 381 8.2E-44 T 12-10-2018 ALFP_2695 5e5488677dafa34a0bacc28c0038ebe1 471 SMART SM00487 32 229 1.8E-59 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain ALFP_2695 5e5488677dafa34a0bacc28c0038ebe1 471 Gene3D G3DSA:3.40.50.300 7 219 7.0E-76 T 12-10-2018 ALFP_2695 5e5488677dafa34a0bacc28c0038ebe1 471 Pfam PF00270 DEAD/DEAH box helicase 37 204 4.8E-51 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ALFP_2695 5e5488677dafa34a0bacc28c0038ebe1 471 SUPERFAMILY SSF52540 82 367 1.71E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2695 5e5488677dafa34a0bacc28c0038ebe1 471 Pfam PF03880 DbpA RNA binding domain 396 466 1.9E-21 T 12-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain ALFP_2695 5e5488677dafa34a0bacc28c0038ebe1 471 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 161 169 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site ALFP_2695 5e5488677dafa34a0bacc28c0038ebe1 471 SMART SM00490 265 346 2.9E-24 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_2695 5e5488677dafa34a0bacc28c0038ebe1 471 Pfam PF00271 Helicase conserved C-terminal domain 240 345 6.2E-26 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_2695 5e5488677dafa34a0bacc28c0038ebe1 471 Gene3D G3DSA:3.30.70.330 395 469 1.5E-18 T 12-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily ALFP_2343 d6c9af5ce8e06aacc74754f1506e374e 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 1.6E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_2343 d6c9af5ce8e06aacc74754f1506e374e 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 1.6E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_2343 d6c9af5ce8e06aacc74754f1506e374e 198 Gene3D G3DSA:1.10.10.60 6 52 1.3E-17 T 12-10-2018 ALFP_2343 d6c9af5ce8e06aacc74754f1506e374e 198 SUPERFAMILY SSF46689 3 76 6.8E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2343 d6c9af5ce8e06aacc74754f1506e374e 198 Gene3D G3DSA:1.10.357.10 53 188 2.2E-20 T 12-10-2018 ALFP_2343 d6c9af5ce8e06aacc74754f1506e374e 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 62 9.7E-14 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_2343 d6c9af5ce8e06aacc74754f1506e374e 198 SUPERFAMILY SSF48498 84 189 1.65E-7 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily ALFP_0320 0ece4a5ddcf8812f026760eda79d21a6 636 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 285 359 4.0E-9 T 12-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 ALFP_0320 0ece4a5ddcf8812f026760eda79d21a6 636 Gene3D G3DSA:1.20.910.10 416 635 6.9E-38 T 12-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 ALFP_0320 0ece4a5ddcf8812f026760eda79d21a6 636 SUPERFAMILY SSF53901 255 369 7.4E-17 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_0320 0ece4a5ddcf8812f026760eda79d21a6 636 Gene3D G3DSA:3.40.47.10 8 201 4.8E-36 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_0320 0ece4a5ddcf8812f026760eda79d21a6 636 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 128 199 1.3E-4 T 12-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 ALFP_0320 0ece4a5ddcf8812f026760eda79d21a6 636 Pfam PF14518 Iron-containing redox enzyme 509 624 3.0E-9 T 12-10-2018 ALFP_0320 0ece4a5ddcf8812f026760eda79d21a6 636 Gene3D G3DSA:3.40.47.10 228 375 6.1E-27 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_0320 0ece4a5ddcf8812f026760eda79d21a6 636 SUPERFAMILY SSF53901 6 199 1.63E-28 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_0320 0ece4a5ddcf8812f026760eda79d21a6 636 SUPERFAMILY SSF48613 419 631 8.76E-27 T 12-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 ALFP_0385 2e6036ed2647c01b72db1ae15fbc19ae 229 Gene3D G3DSA:3.40.50.2300 3 141 1.3E-14 T 12-10-2018 ALFP_0385 2e6036ed2647c01b72db1ae15fbc19ae 229 Pfam PF00072 Response regulator receiver domain 27 120 1.7E-8 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_0385 2e6036ed2647c01b72db1ae15fbc19ae 229 SUPERFAMILY SSF52172 5 134 1.37E-18 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_0385 2e6036ed2647c01b72db1ae15fbc19ae 229 Gene3D G3DSA:1.10.10.60 148 229 9.2E-14 T 12-10-2018 ALFP_0385 2e6036ed2647c01b72db1ae15fbc19ae 229 Pfam PF12833 Helix-turn-helix domain 175 229 4.3E-9 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0385 2e6036ed2647c01b72db1ae15fbc19ae 229 SMART SM00448 7 120 6.7E-8 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2178 d6e7576bdc3b6f54ad680372c729e0f6 266 Pfam PF04954 Siderophore-interacting protein 142 256 5.2E-26 T 12-10-2018 IPR007037 Siderophore-interacting protein, C-terminal domain ALFP_2178 d6e7576bdc3b6f54ad680372c729e0f6 266 SUPERFAMILY SSF63380 10 137 1.46E-12 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_2178 d6e7576bdc3b6f54ad680372c729e0f6 266 Gene3D G3DSA:2.40.30.10 2 135 1.2E-43 T 12-10-2018 ALFP_2178 d6e7576bdc3b6f54ad680372c729e0f6 266 Gene3D G3DSA:3.40.50.80 136 264 7.4E-31 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_2178 d6e7576bdc3b6f54ad680372c729e0f6 266 Pfam PF08021 Siderophore-interacting FAD-binding domain 21 134 1.8E-36 T 12-10-2018 IPR013113 FAD-binding 9, siderophore-interacting ALFP_3704 6aad756b216c1532b614b204859b0104 250 Pfam PF16220 Domain of unknown function (DUF4880) 17 56 1.1E-13 T 12-10-2018 IPR032623 FecR, N-terminal ALFP_3704 6aad756b216c1532b614b204859b0104 250 Pfam PF04773 FecR protein 123 208 9.6E-9 T 12-10-2018 IPR006860 FecR protein ALFP_2271 b14ccacbcacfcb49b92752aa96233c56 437 Gene3D G3DSA:2.60.40.10 314 435 3.1E-20 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_2271 b14ccacbcacfcb49b92752aa96233c56 437 SUPERFAMILY SSF54862 58 323 1.15E-33 T 12-10-2018 ALFP_2271 b14ccacbcacfcb49b92752aa96233c56 437 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 2 429 8.8E-150 T 12-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 ALFP_2271 b14ccacbcacfcb49b92752aa96233c56 437 Pfam PF12801 4Fe-4S binding domain 49 90 9.0E-11 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ALFP_2271 b14ccacbcacfcb49b92752aa96233c56 437 Pfam PF13746 4Fe-4S dicluster domain 172 278 3.4E-42 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ALFP_2271 b14ccacbcacfcb49b92752aa96233c56 437 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 225 236 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site ALFP_2271 b14ccacbcacfcb49b92752aa96233c56 437 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 313 436 1.0E-26 T 12-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain ALFP_3539 e020ae4751e780e62a5a9c73215d9b8b 398 Gene3D G3DSA:3.90.1150.10 22 395 5.1E-138 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_3539 e020ae4751e780e62a5a9c73215d9b8b 398 Pfam PF00155 Aminotransferase class I and II 48 388 4.1E-34 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_3539 e020ae4751e780e62a5a9c73215d9b8b 398 SUPERFAMILY SSF53383 6 397 2.16E-102 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_3539 e020ae4751e780e62a5a9c73215d9b8b 398 Gene3D G3DSA:3.40.640.10 69 288 5.1E-138 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_0888 3af9c7bd9e8932574790854c9c3926b1 341 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 1 335 9.5E-130 T 12-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0888 3af9c7bd9e8932574790854c9c3926b1 341 Gene3D G3DSA:3.50.30.20 1 114 1.8E-44 T 12-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0888 3af9c7bd9e8932574790854c9c3926b1 341 Gene3D G3DSA:3.40.50.880 115 337 1.7E-70 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_0888 3af9c7bd9e8932574790854c9c3926b1 341 PRINTS PR00096 Glutamine amidotransferase superfamily signature 196 205 2.7E-10 T 12-10-2018 ALFP_0888 3af9c7bd9e8932574790854c9c3926b1 341 PRINTS PR00096 Glutamine amidotransferase superfamily signature 309 322 2.7E-10 T 12-10-2018 ALFP_0888 3af9c7bd9e8932574790854c9c3926b1 341 PRINTS PR00096 Glutamine amidotransferase superfamily signature 224 235 2.7E-10 T 12-10-2018 ALFP_0888 3af9c7bd9e8932574790854c9c3926b1 341 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 224 240 3.6E-39 T 12-10-2018 ALFP_0888 3af9c7bd9e8932574790854c9c3926b1 341 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 266 277 3.6E-39 T 12-10-2018 ALFP_0888 3af9c7bd9e8932574790854c9c3926b1 341 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 154 168 3.6E-39 T 12-10-2018 ALFP_0888 3af9c7bd9e8932574790854c9c3926b1 341 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 241 258 3.6E-39 T 12-10-2018 ALFP_0888 3af9c7bd9e8932574790854c9c3926b1 341 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 193 207 3.6E-39 T 12-10-2018 ALFP_0888 3af9c7bd9e8932574790854c9c3926b1 341 Pfam PF00117 Glutamine amidotransferase class-I 157 332 1.9E-43 T 12-10-2018 IPR017926 Glutamine amidotransferase ALFP_0888 3af9c7bd9e8932574790854c9c3926b1 341 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 1 97 7.7E-39 T 12-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0888 3af9c7bd9e8932574790854c9c3926b1 341 SMART SM01097 1 98 2.6E-50 T 12-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0888 3af9c7bd9e8932574790854c9c3926b1 341 SUPERFAMILY SSF52317 116 337 2.9E-59 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_0888 3af9c7bd9e8932574790854c9c3926b1 341 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 1 338 39.369 T 12-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0888 3af9c7bd9e8932574790854c9c3926b1 341 SUPERFAMILY SSF52021 1 105 7.72E-42 T 12-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_1153 a4821ac4c2bbe7c89c18032408364432 361 SUPERFAMILY SSF56176 13 178 1.07E-31 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 ALFP_1153 a4821ac4c2bbe7c89c18032408364432 361 Gene3D G3DSA:3.30.465.10 56 177 2.6E-33 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 ALFP_1153 a4821ac4c2bbe7c89c18032408364432 361 Pfam PF01565 FAD binding domain 13 140 2.5E-19 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 ALFP_1153 a4821ac4c2bbe7c89c18032408364432 361 SUPERFAMILY SSF55103 191 353 1.47E-12 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 ALFP_0430 7f816ff43c4020a4b1c29690c9d16493 388 Gene3D G3DSA:1.10.540.10 1 120 2.4E-30 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 ALFP_0430 7f816ff43c4020a4b1c29690c9d16493 388 PIRSF PIRSF016578 242 385 3.2E-9 T 12-10-2018 ALFP_0430 7f816ff43c4020a4b1c29690c9d16493 388 PIRSF PIRSF016578 2 96 0.0041 T 12-10-2018 ALFP_0430 7f816ff43c4020a4b1c29690c9d16493 388 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 340 359 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 ALFP_0430 7f816ff43c4020a4b1c29690c9d16493 388 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 361 6.3E-35 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 ALFP_0430 7f816ff43c4020a4b1c29690c9d16493 388 SUPERFAMILY SSF47203 231 386 1.4E-46 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 ALFP_0430 7f816ff43c4020a4b1c29690c9d16493 388 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 5.0E-25 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 ALFP_0430 7f816ff43c4020a4b1c29690c9d16493 388 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 219 2.1E-18 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 ALFP_0430 7f816ff43c4020a4b1c29690c9d16493 388 SUPERFAMILY SSF56645 2 246 3.4E-63 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 ALFP_0430 7f816ff43c4020a4b1c29690c9d16493 388 Gene3D G3DSA:2.40.110.10 122 237 4.1E-30 T 12-10-2018 ALFP_0430 7f816ff43c4020a4b1c29690c9d16493 388 Gene3D G3DSA:1.20.140.10 238 382 4.4E-41 T 12-10-2018 ALFP_1011 ce2c722709b13e36e3c31a1186b463b3 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 130 323 4.7E-28 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_1011 ce2c722709b13e36e3c31a1186b463b3 325 SUPERFAMILY SSF161098 108 306 2.75E-14 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1011 ce2c722709b13e36e3c31a1186b463b3 325 Gene3D G3DSA:1.10.3720.10 101 317 4.3E-16 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2998 16d54b496890c560b33943e7bb75a7e5 264 Gene3D G3DSA:3.40.50.1000 12 226 9.9E-42 T 12-10-2018 IPR023214 HAD superfamily ALFP_2998 16d54b496890c560b33943e7bb75a7e5 264 Pfam PF02358 Trehalose-phosphatase 13 231 1.2E-29 T 12-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 ALFP_2998 16d54b496890c560b33943e7bb75a7e5 264 Gene3D G3DSA:3.30.70.1020 94 167 9.9E-42 T 12-10-2018 ALFP_2998 16d54b496890c560b33943e7bb75a7e5 264 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 9 239 3.3E-33 T 12-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 ALFP_2998 16d54b496890c560b33943e7bb75a7e5 264 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 12 209 4.3E-17 T 12-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 ALFP_2998 16d54b496890c560b33943e7bb75a7e5 264 SUPERFAMILY SSF56784 11 242 1.92E-32 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_2237 ea8f0945905035801a98641384ebe14f 310 SUPERFAMILY SSF88713 6 307 5.84E-95 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 ALFP_2237 ea8f0945905035801a98641384ebe14f 310 Pfam PF01522 Polysaccharide deacetylase 76 164 1.7E-14 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 ALFP_2237 ea8f0945905035801a98641384ebe14f 310 Gene3D G3DSA:3.20.20.370 3 310 4.3E-112 T 12-10-2018 ALFP_2237 ea8f0945905035801a98641384ebe14f 310 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 6 306 4.7E-157 T 12-10-2018 IPR017625 PuuE allantoinase/chitin deacetylase 1 ALFP_0679 1ef0f5e11faf914b6e2a05b0df25b48f 167 Gene3D G3DSA:3.30.70.640 10 167 6.6E-63 T 12-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 ALFP_0679 1ef0f5e11faf914b6e2a05b0df25b48f 167 Pfam PF01967 MoaC family 23 158 1.7E-50 T 12-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 ALFP_0679 1ef0f5e11faf914b6e2a05b0df25b48f 167 SUPERFAMILY SSF55040 19 163 1.44E-55 T 12-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 ALFP_0679 1ef0f5e11faf914b6e2a05b0df25b48f 167 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 12 160 5.2E-56 T 12-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 ALFP_0679 1ef0f5e11faf914b6e2a05b0df25b48f 167 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 10 166 33.066 T 12-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 ALFP_2899 001089a0a80e6745c4fc595ef8a35e27 498 SUPERFAMILY SSF52540 286 496 3.5E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2899 001089a0a80e6745c4fc595ef8a35e27 498 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 220 495 56.512 T 12-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 ALFP_2899 001089a0a80e6745c4fc595ef8a35e27 498 SMART SM00382 290 468 4.9E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2899 001089a0a80e6745c4fc595ef8a35e27 498 SUPERFAMILY SSF47364 196 270 1.05E-18 T 12-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 ALFP_2899 001089a0a80e6745c4fc595ef8a35e27 498 Pfam PF00448 SRP54-type protein, GTPase domain 292 495 4.6E-66 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 ALFP_2899 001089a0a80e6745c4fc595ef8a35e27 498 Pfam PF02881 SRP54-type protein, helical bundle domain 210 273 1.4E-12 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 ALFP_2899 001089a0a80e6745c4fc595ef8a35e27 498 Gene3D G3DSA:1.20.120.140 199 493 8.8E-102 T 12-10-2018 ALFP_2899 001089a0a80e6745c4fc595ef8a35e27 498 Gene3D G3DSA:3.40.50.300 288 483 8.8E-102 T 12-10-2018 ALFP_2899 001089a0a80e6745c4fc595ef8a35e27 498 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 220 494 3.1E-95 T 12-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 ALFP_2899 001089a0a80e6745c4fc595ef8a35e27 498 SMART SM00963 201 277 1.4E-19 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 ALFP_2899 001089a0a80e6745c4fc595ef8a35e27 498 SMART SM00962 291 495 3.7E-103 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 ALFP_2801 d6ffcec84dddf497ce3604eedabcbf7f 376 SUPERFAMILY SSF53474 43 371 7.75E-38 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2801 d6ffcec84dddf497ce3604eedabcbf7f 376 Pfam PF00561 alpha/beta hydrolase fold 114 355 1.8E-12 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_2801 d6ffcec84dddf497ce3604eedabcbf7f 376 PIRSF PIRSF005211 11 376 5.0E-110 T 12-10-2018 IPR012020 AB hydrolase 4 family ALFP_2801 d6ffcec84dddf497ce3604eedabcbf7f 376 Gene3D G3DSA:3.40.50.1820 93 351 9.7E-24 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1578 bdc5336a0a5d26614cabb5ee59b64314 487 SUPERFAMILY SSF48452 94 159 3.59E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_1578 bdc5336a0a5d26614cabb5ee59b64314 487 Pfam PF04575 Protein of unknown function (DUF560) 186 487 1.8E-40 T 12-10-2018 IPR007655 Protein of unknown function DUF560 ALFP_1578 bdc5336a0a5d26614cabb5ee59b64314 487 SUPERFAMILY SSF56935 175 465 8.55E-5 T 12-10-2018 ALFP_1578 bdc5336a0a5d26614cabb5ee59b64314 487 Gene3D G3DSA:1.25.40.10 63 181 3.9E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2256 8412cf7b7d6bf8290e5d028fe2539fa6 437 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 193 389 2.0E-9 T 12-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 ALFP_2256 8412cf7b7d6bf8290e5d028fe2539fa6 437 SUPERFAMILY SSF55961 161 434 5.97E-47 T 12-10-2018 ALFP_2256 8412cf7b7d6bf8290e5d028fe2539fa6 437 Pfam PF00355 Rieske [2Fe-2S] domain 42 126 2.2E-18 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ALFP_2256 8412cf7b7d6bf8290e5d028fe2539fa6 437 Gene3D G3DSA:2.102.10.10 41 169 1.5E-95 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_2256 8412cf7b7d6bf8290e5d028fe2539fa6 437 Gene3D G3DSA:3.90.380.10 18 431 1.5E-95 T 12-10-2018 ALFP_2256 8412cf7b7d6bf8290e5d028fe2539fa6 437 SUPERFAMILY SSF50022 13 159 1.25E-41 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_2256 8412cf7b7d6bf8290e5d028fe2539fa6 437 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 77 97 9.0E-39 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2256 8412cf7b7d6bf8290e5d028fe2539fa6 437 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 26 51 9.0E-39 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2256 8412cf7b7d6bf8290e5d028fe2539fa6 437 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 145 171 9.0E-39 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2256 8412cf7b7d6bf8290e5d028fe2539fa6 437 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 187 209 9.0E-39 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2256 8412cf7b7d6bf8290e5d028fe2539fa6 437 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 56 71 9.0E-39 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2256 8412cf7b7d6bf8290e5d028fe2539fa6 437 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 99 119 9.0E-39 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2780 1e27e5ecad19433a00476469542237d7 377 Pfam PF00571 CBS domain 311 365 5.9E-13 T 12-10-2018 IPR000644 CBS domain ALFP_2780 1e27e5ecad19433a00476469542237d7 377 Pfam PF00571 CBS domain 233 283 8.1E-9 T 12-10-2018 IPR000644 CBS domain ALFP_2780 1e27e5ecad19433a00476469542237d7 377 SUPERFAMILY SSF54631 221 365 1.13E-30 T 12-10-2018 ALFP_2780 1e27e5ecad19433a00476469542237d7 377 Gene3D G3DSA:3.10.580.10 214 370 1.3E-31 T 12-10-2018 ALFP_2780 1e27e5ecad19433a00476469542237d7 377 Pfam PF04982 HPP family 55 171 2.1E-29 T 12-10-2018 IPR007065 HPP ALFP_2780 1e27e5ecad19433a00476469542237d7 377 SMART SM00116 238 286 1.4E-4 T 12-10-2018 IPR000644 CBS domain ALFP_2780 1e27e5ecad19433a00476469542237d7 377 SMART SM00116 318 366 2.4E-4 T 12-10-2018 IPR000644 CBS domain ALFP_1135 d79633e0480595222669a54bda43a68c 1158 Pfam PF01336 OB-fold nucleic acid binding domain 995 1070 3.4E-8 T 12-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 ALFP_1135 d79633e0480595222669a54bda43a68c 1158 SMART SM00481 9 76 2.8E-20 T 12-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal ALFP_1135 d79633e0480595222669a54bda43a68c 1158 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 8 1030 0.0 T 12-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_1135 d79633e0480595222669a54bda43a68c 1158 Pfam PF02811 PHP domain 10 174 9.7E-41 T 12-10-2018 IPR004013 PHP domain GO:0003824 ALFP_1135 d79633e0480595222669a54bda43a68c 1158 SUPERFAMILY SSF89550 8 264 1.71E-10 T 12-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 ALFP_1135 d79633e0480595222669a54bda43a68c 1158 Gene3D G3DSA:1.10.10.1600 435 514 1.5E-26 T 12-10-2018 ALFP_1135 d79633e0480595222669a54bda43a68c 1158 Gene3D G3DSA:2.40.50.140 981 1074 3.9E-7 T 12-10-2018 ALFP_1135 d79633e0480595222669a54bda43a68c 1158 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 294 733 3.6E-172 T 12-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_1135 d79633e0480595222669a54bda43a68c 1158 Gene3D G3DSA:3.20.20.140 1 270 3.0E-85 T 12-10-2018 ALFP_1135 d79633e0480595222669a54bda43a68c 1158 Pfam PF14579 Helix-hairpin-helix motif 806 904 1.6E-29 T 12-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_0745 ef5ee0b77b73be516c3f861491e84f47 209 SMART SM00852 18 168 1.1E-23 T 12-10-2018 IPR001453 MoaB/Mog domain ALFP_0745 ef5ee0b77b73be516c3f861491e84f47 209 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 15 160 2.1E-36 T 12-10-2018 IPR001453 MoaB/Mog domain ALFP_0745 ef5ee0b77b73be516c3f861491e84f47 209 SUPERFAMILY SSF53218 15 203 9.68E-44 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily ALFP_0745 ef5ee0b77b73be516c3f861491e84f47 209 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 79 92 - T 12-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 ALFP_0745 ef5ee0b77b73be516c3f861491e84f47 209 Pfam PF00994 Probable molybdopterin binding domain 19 160 2.6E-30 T 12-10-2018 IPR001453 MoaB/Mog domain ALFP_0745 ef5ee0b77b73be516c3f861491e84f47 209 Gene3D G3DSA:3.40.980.10 13 209 4.8E-59 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily ALFP_1491 5c2946fad72f6f0a628e811e6a3f3358 347 SUPERFAMILY SSF75620 15 344 3.01E-131 T 12-10-2018 ALFP_1491 5c2946fad72f6f0a628e811e6a3f3358 347 Gene3D G3DSA:1.20.58.410 2 98 9.8E-26 T 12-10-2018 ALFP_1491 5c2946fad72f6f0a628e811e6a3f3358 347 SMART SM00937 67 177 2.2E-56 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 ALFP_1491 5c2946fad72f6f0a628e811e6a3f3358 347 Pfam PF00472 RF-1 domain 211 319 1.1E-41 T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 ALFP_1491 5c2946fad72f6f0a628e811e6a3f3358 347 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 227 243 - T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 ALFP_1491 5c2946fad72f6f0a628e811e6a3f3358 347 Gene3D G3DSA:3.30.70.1660 112 340 6.4E-98 T 12-10-2018 ALFP_1491 5c2946fad72f6f0a628e811e6a3f3358 347 Gene3D G3DSA:3.30.160.20 208 303 6.4E-98 T 12-10-2018 ALFP_1491 5c2946fad72f6f0a628e811e6a3f3358 347 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 347 37.361 T 12-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 ALFP_1491 5c2946fad72f6f0a628e811e6a3f3358 347 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 5 345 1.5E-153 T 12-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 ALFP_1491 5c2946fad72f6f0a628e811e6a3f3358 347 Pfam PF03462 PCRF domain 14 202 7.6E-57 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 ALFP_3513 d013782fa6c98c49fe1d7a6c792bb6c4 372 Gene3D G3DSA:3.40.50.2000 171 349 2.4E-45 T 12-10-2018 ALFP_3513 d013782fa6c98c49fe1d7a6c792bb6c4 372 SUPERFAMILY SSF53756 5 367 5.1E-56 T 12-10-2018 ALFP_3513 d013782fa6c98c49fe1d7a6c792bb6c4 372 Pfam PF00534 Glycosyl transferases group 1 191 336 9.5E-19 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 ALFP_3513 d013782fa6c98c49fe1d7a6c792bb6c4 372 Pfam PF13439 Glycosyltransferase Family 4 13 168 1.1E-11 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 ALFP_3513 d013782fa6c98c49fe1d7a6c792bb6c4 372 Gene3D G3DSA:3.40.50.2000 14 359 2.4E-45 T 12-10-2018 ALFP_3356 c0f42a42036a4fc3bdd88f6e489ff949 344 Pfam PF02769 AIR synthase related protein, C-terminal domain 170 343 1.1E-28 T 12-10-2018 IPR010918 PurM-like, C-terminal domain ALFP_3356 c0f42a42036a4fc3bdd88f6e489ff949 344 SUPERFAMILY SSF56042 163 338 5.89E-50 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily ALFP_3356 c0f42a42036a4fc3bdd88f6e489ff949 344 Pfam PF00586 AIR synthase related protein, N-terminal domain 49 156 4.1E-20 T 12-10-2018 IPR016188 PurM-like, N-terminal domain ALFP_3356 c0f42a42036a4fc3bdd88f6e489ff949 344 PIRSF PIRSF036407 1 344 2.3E-114 T 12-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 ALFP_3356 c0f42a42036a4fc3bdd88f6e489ff949 344 Gene3D G3DSA:3.30.1330.10 1 161 2.5E-48 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily ALFP_3356 c0f42a42036a4fc3bdd88f6e489ff949 344 Gene3D G3DSA:3.90.650.10 163 344 1.2E-53 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily ALFP_3356 c0f42a42036a4fc3bdd88f6e489ff949 344 Hamap MF_00625 Selenide, water dikinase [selD]. 4 344 44.518 T 12-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 ALFP_3356 c0f42a42036a4fc3bdd88f6e489ff949 344 TIGRFAM TIGR00476 selD: selenide, water dikinase 6 312 1.3E-135 T 12-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 ALFP_3356 c0f42a42036a4fc3bdd88f6e489ff949 344 SUPERFAMILY SSF55326 6 160 5.76E-40 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily ALFP_2175 b18bf8bc1b093ec9e84eceb3cf5b72e1 424 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 139 419 5.2E-77 T 12-10-2018 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 ALFP_2175 b18bf8bc1b093ec9e84eceb3cf5b72e1 424 SUPERFAMILY SSF54966 4 133 2.09E-33 T 12-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 ALFP_2175 b18bf8bc1b093ec9e84eceb3cf5b72e1 424 Gene3D G3DSA:3.30.70.150 1 133 1.9E-43 T 12-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 ALFP_2175 b18bf8bc1b093ec9e84eceb3cf5b72e1 424 SUPERFAMILY SSF51649 133 420 4.71E-86 T 12-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 ALFP_2175 b18bf8bc1b093ec9e84eceb3cf5b72e1 424 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 15 129 5.0E-8 T 12-10-2018 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 ALFP_2175 b18bf8bc1b093ec9e84eceb3cf5b72e1 424 Gene3D G3DSA:3.20.20.110 134 423 1.2E-96 T 12-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 ALFP_2175 b18bf8bc1b093ec9e84eceb3cf5b72e1 424 ProSitePatterns PS00157 Ribulose bisphosphate carboxylase large chain active site. 181 189 - T 12-10-2018 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 ALFP_2962 f38e26e2b7c8b213fb97ab9093d16381 300 SUPERFAMILY SSF53850 91 294 2.17E-28 T 12-10-2018 ALFP_2962 f38e26e2b7c8b213fb97ab9093d16381 300 Gene3D G3DSA:3.40.190.10 90 293 7.0E-48 T 12-10-2018 ALFP_2962 f38e26e2b7c8b213fb97ab9093d16381 300 Pfam PF03466 LysR substrate binding domain 97 296 1.7E-14 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_2962 f38e26e2b7c8b213fb97ab9093d16381 300 Gene3D G3DSA:3.40.190.10 170 268 7.0E-48 T 12-10-2018 ALFP_2962 f38e26e2b7c8b213fb97ab9093d16381 300 SUPERFAMILY SSF46785 2 83 4.97E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2962 f38e26e2b7c8b213fb97ab9093d16381 300 Gene3D G3DSA:1.10.10.10 1 87 3.5E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2962 f38e26e2b7c8b213fb97ab9093d16381 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 6.4E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1433 b32e9f531f014792407da63e3a2ec8a8 153 Pfam PF00692 dUTPase 17 151 3.6E-31 T 12-10-2018 IPR029054 dUTPase-like ALFP_1433 b32e9f531f014792407da63e3a2ec8a8 153 SUPERFAMILY SSF51283 4 152 1.83E-47 T 12-10-2018 IPR036157 dUTPase-like superfamily ALFP_1433 b32e9f531f014792407da63e3a2ec8a8 153 TIGRFAM TIGR00576 dut: dUTP diphosphatase 17 152 1.0E-44 T 12-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 ALFP_1433 b32e9f531f014792407da63e3a2ec8a8 153 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 7 152 28.185 T 12-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 ALFP_1433 b32e9f531f014792407da63e3a2ec8a8 153 Gene3D G3DSA:2.70.40.10 1 153 1.1E-50 T 12-10-2018 IPR036157 dUTPase-like superfamily ALFP_3468 85553661a64f00b070a9cd9ccf7fe86a 315 Gene3D G3DSA:3.40.50.720 7 300 2.2E-92 T 12-10-2018 ALFP_3468 85553661a64f00b070a9cd9ccf7fe86a 315 SUPERFAMILY SSF51735 1 268 3.95E-41 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3468 85553661a64f00b070a9cd9ccf7fe86a 315 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 202 1.3E-21 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 ALFP_3468 85553661a64f00b070a9cd9ccf7fe86a 315 Gene3D G3DSA:3.90.25.10 174 309 2.2E-92 T 12-10-2018 ALFP_3222 f5797ca85bf4c73393eb1fdf2825299e 928 Gene3D G3DSA:3.40.50.200 27 371 2.5E-68 T 12-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 ALFP_3222 f5797ca85bf4c73393eb1fdf2825299e 928 SUPERFAMILY SSF52743 44 374 5.11E-64 T 12-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 ALFP_3222 f5797ca85bf4c73393eb1fdf2825299e 928 SMART SM00869 650 919 1.4E-42 T 12-10-2018 IPR005546 Autotransporter beta-domain ALFP_3222 f5797ca85bf4c73393eb1fdf2825299e 928 Pfam PF00082 Subtilase family 62 360 6.4E-47 T 12-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 ALFP_3222 f5797ca85bf4c73393eb1fdf2825299e 928 SUPERFAMILY SSF103515 615 928 1.02E-57 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily ALFP_3222 f5797ca85bf4c73393eb1fdf2825299e 928 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 111 121 - T 12-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site ALFP_3222 f5797ca85bf4c73393eb1fdf2825299e 928 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 398 429 1.7E-11 T 12-10-2018 IPR013425 Autotransporter-associated beta strand repeat ALFP_3222 f5797ca85bf4c73393eb1fdf2825299e 928 Gene3D G3DSA:2.40.128.130 607 928 8.4E-70 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily ALFP_3222 f5797ca85bf4c73393eb1fdf2825299e 928 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 461 927 5.2E-37 T 12-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 ALFP_3222 f5797ca85bf4c73393eb1fdf2825299e 928 PRINTS PR00723 Subtilisin serine protease family (S8) signature 312 328 2.4E-18 T 12-10-2018 IPR015500 Peptidase S8, subtilisin-related ALFP_3222 f5797ca85bf4c73393eb1fdf2825299e 928 PRINTS PR00723 Subtilisin serine protease family (S8) signature 107 120 2.4E-18 T 12-10-2018 IPR015500 Peptidase S8, subtilisin-related ALFP_3222 f5797ca85bf4c73393eb1fdf2825299e 928 PRINTS PR00723 Subtilisin serine protease family (S8) signature 62 81 2.4E-18 T 12-10-2018 IPR015500 Peptidase S8, subtilisin-related ALFP_3222 f5797ca85bf4c73393eb1fdf2825299e 928 Pfam PF03797 Autotransporter beta-domain 653 909 7.6E-58 T 12-10-2018 IPR005546 Autotransporter beta-domain ALFP_3222 f5797ca85bf4c73393eb1fdf2825299e 928 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 67 78 - T 12-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site ALFP_3222 f5797ca85bf4c73393eb1fdf2825299e 928 Pfam PF12951 Passenger-associated-transport-repeat 399 428 2.1E-9 T 12-10-2018 IPR013425 Autotransporter-associated beta strand repeat ALFP_3222 f5797ca85bf4c73393eb1fdf2825299e 928 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 313 323 - T 12-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site ALFP_0884 db589ec9b12afe4e37b60574e5a52f7d 328 Gene3D G3DSA:2.60.120.1440 105 249 2.2E-27 T 12-10-2018 ALFP_0884 db589ec9b12afe4e37b60574e5a52f7d 328 PIRSF PIRSF018266 5 328 2.7E-77 T 12-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component ALFP_0884 db589ec9b12afe4e37b60574e5a52f7d 328 Pfam PF16220 Domain of unknown function (DUF4880) 13 54 4.7E-13 T 12-10-2018 IPR032623 FecR, N-terminal ALFP_0884 db589ec9b12afe4e37b60574e5a52f7d 328 Pfam PF04773 FecR protein 119 211 9.1E-19 T 12-10-2018 IPR006860 FecR protein ALFP_2855 0b870388549bdcdddf7a84fd35cab1b8 528 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_2855 0b870388549bdcdddf7a84fd35cab1b8 528 SUPERFAMILY SSF52540 26 245 1.81E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2855 0b870388549bdcdddf7a84fd35cab1b8 528 Pfam PF00005 ABC transporter 292 448 1.9E-12 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2855 0b870388549bdcdddf7a84fd35cab1b8 528 Pfam PF00005 ABC transporter 44 188 2.6E-36 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2855 0b870388549bdcdddf7a84fd35cab1b8 528 SMART SM00382 52 238 9.5E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2855 0b870388549bdcdddf7a84fd35cab1b8 528 ProSitePatterns PS00211 ABC transporters family signature. 421 435 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_2855 0b870388549bdcdddf7a84fd35cab1b8 528 SUPERFAMILY SSF52540 275 502 3.24E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2855 0b870388549bdcdddf7a84fd35cab1b8 528 Gene3D G3DSA:3.40.50.300 17 255 4.0E-64 T 12-10-2018 ALFP_2855 0b870388549bdcdddf7a84fd35cab1b8 528 Gene3D G3DSA:3.40.50.300 270 512 5.4E-33 T 12-10-2018 ALFP_1866 cbba8164d79e8d5e35bdc6d2b55b16da 310 Pfam PF08340 Domain of unknown function (DUF1732) 214 310 6.8E-31 T 12-10-2018 IPR013551 Domain of unknown function DUF1732 ALFP_1866 cbba8164d79e8d5e35bdc6d2b55b16da 310 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 310 1.2E-55 T 12-10-2018 IPR005229 Conserved hypothetical protein CHP00255 ALFP_1866 cbba8164d79e8d5e35bdc6d2b55b16da 310 Pfam PF03755 YicC-like family, N-terminal region 2 152 1.9E-34 T 12-10-2018 IPR013527 YicC-like, N-terminal ALFP_2531 8aea8fe2904ed62ce42c6be167430efb 362 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 342 145.62 T 12-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 ALFP_2531 8aea8fe2904ed62ce42c6be167430efb 362 SUPERFAMILY SSF53659 6 337 7.81E-106 T 12-10-2018 ALFP_2531 8aea8fe2904ed62ce42c6be167430efb 362 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 6 341 2.6E-107 T 12-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 ALFP_2531 8aea8fe2904ed62ce42c6be167430efb 362 PIRSF PIRSF002465 4 342 1.0E-125 T 12-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 ALFP_2531 8aea8fe2904ed62ce42c6be167430efb 362 Pfam PF02504 Fatty acid synthesis protein 6 325 3.1E-107 T 12-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 ALFP_2531 8aea8fe2904ed62ce42c6be167430efb 362 Gene3D G3DSA:3.40.718.10 4 349 3.1E-126 T 12-10-2018 ALFP_1026 0ff3c08796827ad3bd772118bbb75dbf 861 SUPERFAMILY SSF52016 162 370 9.16E-67 T 12-10-2018 ALFP_1026 0ff3c08796827ad3bd772118bbb75dbf 861 Gene3D G3DSA:3.40.1060.10 383 682 2.8E-150 T 12-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 ALFP_1026 0ff3c08796827ad3bd772118bbb75dbf 861 SUPERFAMILY SSF53732 377 854 7.46E-143 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 ALFP_1026 0ff3c08796827ad3bd772118bbb75dbf 861 Gene3D G3DSA:3.30.499.10 403 530 2.8E-150 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 ALFP_1026 0ff3c08796827ad3bd772118bbb75dbf 861 Gene3D G3DSA:3.20.19.10 162 359 8.2E-73 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 ALFP_1026 0ff3c08796827ad3bd772118bbb75dbf 861 Gene3D G3DSA:1.25.40.310 1 161 7.1E-68 T 12-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 ALFP_1026 0ff3c08796827ad3bd772118bbb75dbf 861 Pfam PF11791 Aconitate B N-terminal domain 5 156 7.4E-64 T 12-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 ALFP_1026 0ff3c08796827ad3bd772118bbb75dbf 861 PIRSF PIRSF036687 1 859 0.0 T 12-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 ALFP_1026 0ff3c08796827ad3bd772118bbb75dbf 861 SUPERFAMILY SSF74778 1 160 1.57E-67 T 12-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 ALFP_1026 0ff3c08796827ad3bd772118bbb75dbf 861 Pfam PF00330 Aconitase family (aconitate hydratase) 473 815 2.3E-38 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_1026 0ff3c08796827ad3bd772118bbb75dbf 861 ProSitePatterns PS00450 Aconitase family signature 1. 703 720 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 ALFP_1026 0ff3c08796827ad3bd772118bbb75dbf 861 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 854 0.0 T 12-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 ALFP_1026 0ff3c08796827ad3bd772118bbb75dbf 861 Gene3D G3DSA:3.30.499.10 684 861 6.5E-62 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 ALFP_1026 0ff3c08796827ad3bd772118bbb75dbf 861 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 380 3.5E-96 T 12-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 ALFP_1286 e2cb90295892223a2e2d5b8c5320879a 126 Pfam PF07681 DoxX 8 85 3.5E-11 T 12-10-2018 IPR032808 DoxX family ALFP_3641 07a7bbeb3800a95d748fa1f699c63040 431 PIRSF PIRSF000429 1 427 2.4E-125 T 12-10-2018 IPR002155 Thiolase GO:0016747 ALFP_3641 07a7bbeb3800a95d748fa1f699c63040 431 ProSitePatterns PS00737 Thiolases signature 2. 372 388 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 ALFP_3641 07a7bbeb3800a95d748fa1f699c63040 431 Gene3D G3DSA:3.40.47.10 128 424 1.4E-121 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_3641 07a7bbeb3800a95d748fa1f699c63040 431 Pfam PF02803 Thiolase, C-terminal domain 287 424 3.9E-39 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 ALFP_3641 07a7bbeb3800a95d748fa1f699c63040 431 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 424 2.8E-127 T 12-10-2018 IPR002155 Thiolase GO:0016747 ALFP_3641 07a7bbeb3800a95d748fa1f699c63040 431 ProSitePatterns PS00099 Thiolases active site. 407 420 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 ALFP_3641 07a7bbeb3800a95d748fa1f699c63040 431 Gene3D G3DSA:3.40.47.10 8 293 1.4E-121 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_3641 07a7bbeb3800a95d748fa1f699c63040 431 Pfam PF00108 Thiolase, N-terminal domain 6 279 1.2E-58 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 ALFP_3641 07a7bbeb3800a95d748fa1f699c63040 431 SUPERFAMILY SSF53901 288 424 5.5E-36 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_3641 07a7bbeb3800a95d748fa1f699c63040 431 SUPERFAMILY SSF53901 6 287 1.25E-62 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_3220 f18e4368f03c0ab0c4c7326ff5ea0650 1313 Pfam PF13183 4Fe-4S dicluster domain 846 924 1.7E-6 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ALFP_3220 f18e4368f03c0ab0c4c7326ff5ea0650 1313 Gene3D G3DSA:3.30.465.40 147 346 1.1E-33 T 12-10-2018 ALFP_3220 f18e4368f03c0ab0c4c7326ff5ea0650 1313 SUPERFAMILY SSF55103 445 574 9.97E-16 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 ALFP_3220 f18e4368f03c0ab0c4c7326ff5ea0650 1313 Pfam PF02913 FAD linked oxidases, C-terminal domain 452 569 1.3E-5 T 12-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 ALFP_3220 f18e4368f03c0ab0c4c7326ff5ea0650 1313 Pfam PF02913 FAD linked oxidases, C-terminal domain 697 809 7.2E-18 T 12-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 ALFP_3220 f18e4368f03c0ab0c4c7326ff5ea0650 1313 Pfam PF11880 Domain of unknown function (DUF3400) 1269 1313 2.8E-24 T 12-10-2018 IPR021817 Protein of unknown function DUF3400 ALFP_3220 f18e4368f03c0ab0c4c7326ff5ea0650 1313 Pfam PF12447 Protein of unknown function (DUF3683) 21 137 7.8E-52 T 12-10-2018 IPR022153 Protein of unknown function DUF3683 ALFP_3220 f18e4368f03c0ab0c4c7326ff5ea0650 1313 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 910 921 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site ALFP_3220 f18e4368f03c0ab0c4c7326ff5ea0650 1313 Gene3D G3DSA:3.30.70.2740 697 773 1.6E-5 T 12-10-2018 ALFP_3220 f18e4368f03c0ab0c4c7326ff5ea0650 1313 Pfam PF02754 Cysteine-rich domain 1180 1266 3.8E-4 T 12-10-2018 IPR004017 Cysteine-rich domain ALFP_3220 f18e4368f03c0ab0c4c7326ff5ea0650 1313 Pfam PF02754 Cysteine-rich domain 1055 1144 2.0E-6 T 12-10-2018 IPR004017 Cysteine-rich domain ALFP_3220 f18e4368f03c0ab0c4c7326ff5ea0650 1313 SUPERFAMILY SSF46548 843 940 2.62E-12 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 ALFP_3220 f18e4368f03c0ab0c4c7326ff5ea0650 1313 Pfam PF01565 FAD binding domain 187 332 1.8E-22 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 ALFP_3220 f18e4368f03c0ab0c4c7326ff5ea0650 1313 SUPERFAMILY SSF55103 687 812 1.37E-26 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 ALFP_3220 f18e4368f03c0ab0c4c7326ff5ea0650 1313 SUPERFAMILY SSF56176 148 418 8.59E-54 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 ALFP_2783 d24ceffcc9c9aa8f970cdd900bed1162 472 PRINTS PR00149 Fumarate lyase superfamily signature 272 299 6.4E-28 T 12-10-2018 IPR000362 Fumarate lyase family ALFP_2783 d24ceffcc9c9aa8f970cdd900bed1162 472 PRINTS PR00149 Fumarate lyase superfamily signature 181 199 6.4E-28 T 12-10-2018 IPR000362 Fumarate lyase family ALFP_2783 d24ceffcc9c9aa8f970cdd900bed1162 472 PRINTS PR00149 Fumarate lyase superfamily signature 318 334 6.4E-28 T 12-10-2018 IPR000362 Fumarate lyase family ALFP_2783 d24ceffcc9c9aa8f970cdd900bed1162 472 PRINTS PR00149 Fumarate lyase superfamily signature 136 154 6.4E-28 T 12-10-2018 IPR000362 Fumarate lyase family ALFP_2783 d24ceffcc9c9aa8f970cdd900bed1162 472 SUPERFAMILY SSF48557 4 460 3.53E-144 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 ALFP_2783 d24ceffcc9c9aa8f970cdd900bed1162 472 Pfam PF00206 Lyase 13 343 3.3E-93 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal ALFP_2783 d24ceffcc9c9aa8f970cdd900bed1162 472 Gene3D G3DSA:1.10.40.30 409 458 1.3E-17 T 12-10-2018 ALFP_2783 d24ceffcc9c9aa8f970cdd900bed1162 472 Gene3D G3DSA:1.10.275.10 2 140 1.3E-57 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal ALFP_2783 d24ceffcc9c9aa8f970cdd900bed1162 472 Pfam PF10415 Fumarase C C-terminus 409 461 5.9E-19 T 12-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 ALFP_2783 d24ceffcc9c9aa8f970cdd900bed1162 472 ProSitePatterns PS00163 Fumarate lyases signature. 318 327 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 ALFP_2783 d24ceffcc9c9aa8f970cdd900bed1162 472 Gene3D G3DSA:1.20.200.10 141 407 1.9E-109 T 12-10-2018 ALFP_3013 eb42e552be9c59d9fc89bc0634164163 280 SUPERFAMILY SSF56784 16 267 4.35E-57 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_3013 eb42e552be9c59d9fc89bc0634164163 280 Gene3D G3DSA:3.40.50.1000 16 267 1.8E-101 T 12-10-2018 IPR023214 HAD superfamily ALFP_3013 eb42e552be9c59d9fc89bc0634164163 280 Gene3D G3DSA:1.10.150.240 34 111 1.8E-101 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 ALFP_3013 eb42e552be9c59d9fc89bc0634164163 280 Hamap MF_01375 Phosphonoacetaldehyde hydrolase [phnX]. 1 280 124.602 T 12-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 ALFP_3013 eb42e552be9c59d9fc89bc0634164163 280 Pfam PF13419 Haloacid dehalogenase-like hydrolase 19 214 1.9E-10 T 12-10-2018 ALFP_3013 eb42e552be9c59d9fc89bc0634164163 280 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 85 214 7.0E-12 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 ALFP_3013 eb42e552be9c59d9fc89bc0634164163 280 TIGRFAM TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase 15 267 6.6E-109 T 12-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 ALFP_0520 a5ebb01cac7d40e4e440cf326b2ebd57 153 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 17 144 7.7E-47 T 12-10-2018 IPR003791 Protein of unknown function UPF0178 ALFP_0520 a5ebb01cac7d40e4e440cf326b2ebd57 153 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 31.536 T 12-10-2018 IPR003791 Protein of unknown function UPF0178 ALFP_2716 111bddd462dfcd42dbbcf0ea0331a164 396 Gene3D G3DSA:3.40.47.10 129 393 1.3E-160 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2716 111bddd462dfcd42dbbcf0ea0331a164 396 SUPERFAMILY SSF53901 6 273 2.76E-91 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2716 111bddd462dfcd42dbbcf0ea0331a164 396 SUPERFAMILY SSF53901 275 394 5.15E-45 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2716 111bddd462dfcd42dbbcf0ea0331a164 396 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 ALFP_2716 111bddd462dfcd42dbbcf0ea0331a164 396 ProSitePatterns PS00099 Thiolases active site. 377 390 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 ALFP_2716 111bddd462dfcd42dbbcf0ea0331a164 396 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 9 394 2.4E-148 T 12-10-2018 IPR002155 Thiolase GO:0016747 ALFP_2716 111bddd462dfcd42dbbcf0ea0331a164 396 Pfam PF00108 Thiolase, N-terminal domain 7 265 2.4E-103 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 ALFP_2716 111bddd462dfcd42dbbcf0ea0331a164 396 ProSitePatterns PS00737 Thiolases signature 2. 342 358 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 ALFP_2716 111bddd462dfcd42dbbcf0ea0331a164 396 Gene3D G3DSA:3.40.47.10 9 279 1.3E-160 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2716 111bddd462dfcd42dbbcf0ea0331a164 396 PIRSF PIRSF000429 1 396 3.2E-139 T 12-10-2018 IPR002155 Thiolase GO:0016747 ALFP_2716 111bddd462dfcd42dbbcf0ea0331a164 396 Pfam PF02803 Thiolase, C-terminal domain 274 394 1.8E-52 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 ALFP_2593 832602c987ca59c18e7f647beb0498d5 135 PRINTS PR01651 Protein-export SecG membrane protein signature 58 80 2.9E-29 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 ALFP_2593 832602c987ca59c18e7f647beb0498d5 135 PRINTS PR01651 Protein-export SecG membrane protein signature 27 41 2.9E-29 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 ALFP_2593 832602c987ca59c18e7f647beb0498d5 135 PRINTS PR01651 Protein-export SecG membrane protein signature 42 58 2.9E-29 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 ALFP_2593 832602c987ca59c18e7f647beb0498d5 135 PRINTS PR01651 Protein-export SecG membrane protein signature 7 27 2.9E-29 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 ALFP_2593 832602c987ca59c18e7f647beb0498d5 135 Pfam PF03840 Preprotein translocase SecG subunit 8 76 2.8E-21 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 ALFP_2593 832602c987ca59c18e7f647beb0498d5 135 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 7 77 6.4E-24 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 ALFP_2380 1f2c8aa2ed6a41d77759231f5f67037c 569 Pfam PF01747 ATP-sulfurylase 184 390 1.6E-62 T 12-10-2018 IPR024951 Sulphate adenylyltransferase catalytic domain GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 ALFP_2380 1f2c8aa2ed6a41d77759231f5f67037c 569 Gene3D G3DSA:3.10.400.10 13 180 7.5E-51 T 12-10-2018 ALFP_2380 1f2c8aa2ed6a41d77759231f5f67037c 569 Pfam PF14306 PUA-like domain 14 175 1.4E-44 T 12-10-2018 IPR025980 ATP-sulfurylase PUA-like domain KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 ALFP_2380 1f2c8aa2ed6a41d77759231f5f67037c 569 Gene3D G3DSA:3.40.50.620 183 396 1.7E-67 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_2380 1f2c8aa2ed6a41d77759231f5f67037c 569 SUPERFAMILY SSF88697 14 179 2.49E-44 T 12-10-2018 IPR015947 PUA-like superfamily ALFP_2380 1f2c8aa2ed6a41d77759231f5f67037c 569 SUPERFAMILY SSF52374 199 389 4.15E-54 T 12-10-2018 ALFP_3542 9c4265dde67039ce5276e147978b5067 473 Pfam PF01979 Amidohydrolase family 60 445 6.4E-23 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 ALFP_3542 9c4265dde67039ce5276e147978b5067 473 Gene3D G3DSA:2.30.40.10 15 450 5.5E-163 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_3542 9c4265dde67039ce5276e147978b5067 473 SUPERFAMILY SSF51556 62 390 5.83E-61 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_3542 9c4265dde67039ce5276e147978b5067 473 SUPERFAMILY SSF51338 376 451 1.47E-9 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_3542 9c4265dde67039ce5276e147978b5067 473 Gene3D G3DSA:3.20.20.140 64 462 5.5E-163 T 12-10-2018 ALFP_3542 9c4265dde67039ce5276e147978b5067 473 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 9 470 6.5E-165 T 12-10-2018 IPR010252 Formiminoglutamate deiminase ALFP_0894 a2f01dd7e7be8f885df1fd98e64ded83 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 12-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 ALFP_0894 a2f01dd7e7be8f885df1fd98e64ded83 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 1.2E-29 T 12-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 ALFP_0894 a2f01dd7e7be8f885df1fd98e64ded83 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 156 3.7E-58 T 12-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 ALFP_0894 a2f01dd7e7be8f885df1fd98e64ded83 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 12-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 ALFP_0894 a2f01dd7e7be8f885df1fd98e64ded83 158 PIRSF PIRSF006092 1 158 5.9E-54 T 12-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 ALFP_0894 a2f01dd7e7be8f885df1fd98e64ded83 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 1.3E-32 T 12-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 ALFP_0894 a2f01dd7e7be8f885df1fd98e64ded83 158 Gene3D G3DSA:3.10.50.30 78 158 7.5E-31 T 12-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 ALFP_0894 a2f01dd7e7be8f885df1fd98e64ded83 158 Gene3D G3DSA:1.10.287.180 1 75 1.2E-31 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 ALFP_0894 a2f01dd7e7be8f885df1fd98e64ded83 158 SUPERFAMILY SSF46557 4 77 1.7E-27 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 ALFP_0894 a2f01dd7e7be8f885df1fd98e64ded83 158 SUPERFAMILY SSF54534 82 157 3.27E-24 T 12-10-2018 ALFP_0894 a2f01dd7e7be8f885df1fd98e64ded83 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 33.023 T 12-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 ALFP_1703 1fbc158d93cc7a362628c36fc673c293 95 Pfam PF04380 Membrane fusogenic activity 5 75 9.7E-23 T 12-10-2018 IPR007475 Membrane fusogenic activity ALFP_0310 aff459c29d13aa2320d3ee43a9fb5afd 1066 Pfam PF12513 Mitochondrial degradasome RNA helicase subunit C terminal 999 1045 6.5E-10 T 12-10-2018 IPR022192 Mitochondrial degradasome RNA helicase subunit, C-terminal domain GO:0016817 ALFP_0310 aff459c29d13aa2320d3ee43a9fb5afd 1066 Gene3D G3DSA:3.40.50.300 735 876 7.3E-43 T 12-10-2018 ALFP_0310 aff459c29d13aa2320d3ee43a9fb5afd 1066 Gene3D G3DSA:3.40.50.300 553 705 4.1E-42 T 12-10-2018 ALFP_0310 aff459c29d13aa2320d3ee43a9fb5afd 1066 Pfam PF00271 Helicase conserved C-terminal domain 749 851 8.4E-11 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_0310 aff459c29d13aa2320d3ee43a9fb5afd 1066 SMART SM00490 762 851 2.2E-16 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_0310 aff459c29d13aa2320d3ee43a9fb5afd 1066 SUPERFAMILY SSF52540 565 858 2.43E-29 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0056 1def604149c36e7839efe153124edcd8 292 TIGRFAM TIGR02321 Pphn_pyruv_hyd: phosphonopyruvate hydrolase 5 292 1.9E-169 T 12-10-2018 IPR012649 Phosphonopyruvate hydrolase KEGG: 00440+3.11.1.3 ALFP_0056 1def604149c36e7839efe153124edcd8 292 Gene3D G3DSA:3.20.20.60 3 292 1.3E-93 T 12-10-2018 ALFP_0056 1def604149c36e7839efe153124edcd8 292 SUPERFAMILY SSF51621 5 291 4.26E-76 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 ALFP_0056 1def604149c36e7839efe153124edcd8 292 Pfam PF13714 Phosphoenolpyruvate phosphomutase 15 255 1.6E-70 T 12-10-2018 ALFP_2313 8e0bc2cd6c428d71869482f71b2f8663 332 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 327 1.8E-126 T 12-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 ALFP_2313 8e0bc2cd6c428d71869482f71b2f8663 332 Gene3D G3DSA:3.40.50.720 3 322 1.8E-119 T 12-10-2018 ALFP_2313 8e0bc2cd6c428d71869482f71b2f8663 332 Gene3D G3DSA:3.90.25.10 166 309 1.8E-119 T 12-10-2018 ALFP_2313 8e0bc2cd6c428d71869482f71b2f8663 332 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 328 47.875 T 12-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 ALFP_2313 8e0bc2cd6c428d71869482f71b2f8663 332 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 240 4.4E-41 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 ALFP_2313 8e0bc2cd6c428d71869482f71b2f8663 332 SUPERFAMILY SSF51735 2 327 4.26E-54 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1131 885169a2d16e3aca80586b745d2c36fa 90 SUPERFAMILY SSF111148 1 89 1.57E-36 T 12-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 ALFP_1131 885169a2d16e3aca80586b745d2c36fa 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 76 2.0E-30 T 12-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 ALFP_1131 885169a2d16e3aca80586b745d2c36fa 90 Gene3D G3DSA:1.10.3880.10 1 90 5.0E-36 T 12-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 ALFP_1131 885169a2d16e3aca80586b745d2c36fa 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 26.804 T 12-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 ALFP_1131 885169a2d16e3aca80586b745d2c36fa 90 PIRSF PIRSF029827 1 90 8.2E-39 T 12-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 ALFP_1131 885169a2d16e3aca80586b745d2c36fa 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 2.2E-39 T 12-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 ALFP_0361 47933af8fefa27fdd3a6f1583f8c386d 490 SUPERFAMILY SSF51971 142 416 2.12E-63 T 12-10-2018 ALFP_0361 47933af8fefa27fdd3a6f1583f8c386d 490 PRINTS PR00419 Adrenodoxin reductase family signature 296 310 5.1E-21 T 12-10-2018 ALFP_0361 47933af8fefa27fdd3a6f1583f8c386d 490 PRINTS PR00419 Adrenodoxin reductase family signature 145 167 5.1E-21 T 12-10-2018 ALFP_0361 47933af8fefa27fdd3a6f1583f8c386d 490 PRINTS PR00419 Adrenodoxin reductase family signature 168 181 5.1E-21 T 12-10-2018 ALFP_0361 47933af8fefa27fdd3a6f1583f8c386d 490 SUPERFAMILY SSF46548 2 154 2.62E-40 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 ALFP_0361 47933af8fefa27fdd3a6f1583f8c386d 490 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 383 471 1.4E-6 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ALFP_0361 47933af8fefa27fdd3a6f1583f8c386d 490 Gene3D G3DSA:3.50.50.60 142 251 3.0E-14 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0361 47933af8fefa27fdd3a6f1583f8c386d 490 SUPERFAMILY SSF51971 391 483 8.59E-11 T 12-10-2018 ALFP_0361 47933af8fefa27fdd3a6f1583f8c386d 490 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 144 330 8.3E-19 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ALFP_0361 47933af8fefa27fdd3a6f1583f8c386d 490 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 489 5.8E-218 T 12-10-2018 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 ALFP_0361 47933af8fefa27fdd3a6f1583f8c386d 490 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 23 130 1.1E-26 T 12-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 ALFP_0361 47933af8fefa27fdd3a6f1583f8c386d 490 Gene3D G3DSA:1.10.1060.10 9 141 1.8E-25 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 ALFP_0361 47933af8fefa27fdd3a6f1583f8c386d 490 Gene3D G3DSA:3.50.50.60 257 415 4.1E-37 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1472 d259b6157ed03877467e94027d586726 217 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 25 213 1.4E-102 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ALFP_1472 d259b6157ed03877467e94027d586726 217 Pfam PF00574 Clp protease 35 214 2.7E-86 T 12-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA ALFP_1472 d259b6157ed03877467e94027d586726 217 PRINTS PR00127 Clp protease catalytic subunit P signature 190 209 2.1E-52 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ALFP_1472 d259b6157ed03877467e94027d586726 217 PRINTS PR00127 Clp protease catalytic subunit P signature 41 56 2.1E-52 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ALFP_1472 d259b6157ed03877467e94027d586726 217 PRINTS PR00127 Clp protease catalytic subunit P signature 133 152 2.1E-52 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ALFP_1472 d259b6157ed03877467e94027d586726 217 PRINTS PR00127 Clp protease catalytic subunit P signature 112 129 2.1E-52 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ALFP_1472 d259b6157ed03877467e94027d586726 217 PRINTS PR00127 Clp protease catalytic subunit P signature 81 101 2.1E-52 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ALFP_1472 d259b6157ed03877467e94027d586726 217 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 134 147 - T 12-10-2018 IPR033135 ClpP, histidine active site ALFP_1472 d259b6157ed03877467e94027d586726 217 SUPERFAMILY SSF52096 33 216 3.41E-73 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_1472 d259b6157ed03877467e94027d586726 217 Gene3D G3DSA:3.90.226.10 16 216 1.2E-82 T 12-10-2018 ALFP_1472 d259b6157ed03877467e94027d586726 217 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 25 215 43.853 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ALFP_3667 4df84e0ffeff1ef067cf13747fa5a0af 280 Pfam PF00005 ABC transporter 56 202 1.1E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3667 4df84e0ffeff1ef067cf13747fa5a0af 280 Gene3D G3DSA:3.40.50.300 43 280 5.9E-71 T 12-10-2018 ALFP_3667 4df84e0ffeff1ef067cf13747fa5a0af 280 SMART SM00382 63 251 1.3E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3667 4df84e0ffeff1ef067cf13747fa5a0af 280 SUPERFAMILY SSF52540 53 277 4.35E-71 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3667 4df84e0ffeff1ef067cf13747fa5a0af 280 ProSitePatterns PS00211 ABC transporters family signature. 175 189 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0774 5869e3c840d8a432409cfb78d1aed4c0 256 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 150 251 1.0E-31 T 12-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 ALFP_0774 5869e3c840d8a432409cfb78d1aed4c0 256 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 12 255 25.517 T 12-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 ALFP_0774 5869e3c840d8a432409cfb78d1aed4c0 256 SUPERFAMILY SSF63848 149 254 9.68E-31 T 12-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 ALFP_0774 5869e3c840d8a432409cfb78d1aed4c0 256 Gene3D G3DSA:3.30.750.120 8 121 1.8E-17 T 12-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily ALFP_0774 5869e3c840d8a432409cfb78d1aed4c0 256 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 13 253 7.5E-54 T 12-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 ALFP_0774 5869e3c840d8a432409cfb78d1aed4c0 256 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 12 101 6.3E-13 T 12-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 ALFP_0774 5869e3c840d8a432409cfb78d1aed4c0 256 Gene3D G3DSA:2.160.20.70 146 256 6.5E-34 T 12-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 ALFP_0277 2d3277464a18fdb4b3b2ed9c573c6396 133 Hamap MF_00791 Protein ApaG [apaG]. 8 133 33.953 T 12-10-2018 IPR023065 Uncharacterised protein family ApaG ALFP_0277 2d3277464a18fdb4b3b2ed9c573c6396 133 Pfam PF04379 ApaG domain 25 110 8.4E-39 T 12-10-2018 IPR007474 ApaG domain ALFP_0277 2d3277464a18fdb4b3b2ed9c573c6396 133 SUPERFAMILY SSF110069 13 133 1.44E-50 T 12-10-2018 IPR036767 ApaG domain superfamily ALFP_0277 2d3277464a18fdb4b3b2ed9c573c6396 133 Gene3D G3DSA:2.60.40.1470 4 133 6.9E-56 T 12-10-2018 IPR036767 ApaG domain superfamily ALFP_0224 b9dd9787744aa84d345b04d31a32d293 266 Gene3D G3DSA:3.40.50.300 8 262 4.3E-57 T 12-10-2018 ALFP_0224 b9dd9787744aa84d345b04d31a32d293 266 Pfam PF00005 ABC transporter 31 192 5.5E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0224 b9dd9787744aa84d345b04d31a32d293 266 SMART SM00382 40 241 1.3E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0224 b9dd9787744aa84d345b04d31a32d293 266 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 241 263 4.2E-9 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal ALFP_0224 b9dd9787744aa84d345b04d31a32d293 266 SUPERFAMILY SSF52540 15 263 2.61E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3462 03947efbc785cf4b1db85ac29751e730 376 PIRSF PIRSF000138 1 374 8.2E-124 T 12-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 ALFP_3462 03947efbc785cf4b1db85ac29751e730 376 Pfam PF01070 FMN-dependent dehydrogenase 12 369 1.2E-127 T 12-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 ALFP_3462 03947efbc785cf4b1db85ac29751e730 376 Gene3D G3DSA:3.20.20.70 2 373 2.3E-127 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_3462 03947efbc785cf4b1db85ac29751e730 376 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 271 277 - T 12-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 ALFP_3462 03947efbc785cf4b1db85ac29751e730 376 SUPERFAMILY SSF51395 3 369 6.28E-93 T 12-10-2018 ALFP_0025 f804a15c3737d2c6fadecc1beacf8f53 333 Gene3D G3DSA:3.90.180.10 28 327 1.8E-94 T 12-10-2018 ALFP_0025 f804a15c3737d2c6fadecc1beacf8f53 333 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 91 5.6E-6 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ALFP_0025 f804a15c3737d2c6fadecc1beacf8f53 333 Pfam PF00107 Zinc-binding dehydrogenase 163 277 1.6E-10 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 ALFP_0025 f804a15c3737d2c6fadecc1beacf8f53 333 SUPERFAMILY SSF50129 6 147 1.57E-33 T 12-10-2018 IPR011032 GroES-like superfamily ALFP_0025 f804a15c3737d2c6fadecc1beacf8f53 333 Gene3D G3DSA:3.40.50.720 130 297 1.8E-94 T 12-10-2018 ALFP_0025 f804a15c3737d2c6fadecc1beacf8f53 333 SUPERFAMILY SSF51735 121 287 1.86E-28 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0025 f804a15c3737d2c6fadecc1beacf8f53 333 SMART SM00829 17 327 2.5E-5 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 ALFP_0025 f804a15c3737d2c6fadecc1beacf8f53 333 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 7 327 5.6E-99 T 12-10-2018 IPR014188 Acrylyl-CoA reductase AcuI ALFP_2579 045eb20911b09fe9f0eb76d2e66329aa 668 Pfam PF00361 Proton-conducting membrane transporter 139 433 4.2E-87 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2579 045eb20911b09fe9f0eb76d2e66329aa 668 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 70 127 1.2E-26 T 12-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2579 045eb20911b09fe9f0eb76d2e66329aa 668 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 116 136 3.3E-64 T 12-10-2018 ALFP_2579 045eb20911b09fe9f0eb76d2e66329aa 668 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 163 184 3.3E-64 T 12-10-2018 ALFP_2579 045eb20911b09fe9f0eb76d2e66329aa 668 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 258 284 3.3E-64 T 12-10-2018 ALFP_2579 045eb20911b09fe9f0eb76d2e66329aa 668 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 431 450 3.3E-64 T 12-10-2018 ALFP_2579 045eb20911b09fe9f0eb76d2e66329aa 668 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 326 338 3.3E-64 T 12-10-2018 ALFP_2579 045eb20911b09fe9f0eb76d2e66329aa 668 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 88 113 3.3E-64 T 12-10-2018 ALFP_2579 045eb20911b09fe9f0eb76d2e66329aa 668 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 236 257 3.3E-64 T 12-10-2018 ALFP_2579 045eb20911b09fe9f0eb76d2e66329aa 668 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 369 391 1.6E-12 T 12-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 ALFP_2579 045eb20911b09fe9f0eb76d2e66329aa 668 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 90 110 1.6E-12 T 12-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 ALFP_2579 045eb20911b09fe9f0eb76d2e66329aa 668 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 64 88 1.6E-12 T 12-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 ALFP_2579 045eb20911b09fe9f0eb76d2e66329aa 668 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 483 504 1.6E-12 T 12-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 ALFP_2579 045eb20911b09fe9f0eb76d2e66329aa 668 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 5 663 7.4E-243 T 12-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2185 37d8d796253ecd446a75e884ae6801b8 358 SMART SM00382 32 215 3.2E-21 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2185 37d8d796253ecd446a75e884ae6801b8 358 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_2185 37d8d796253ecd446a75e884ae6801b8 358 Pfam PF00005 ABC transporter 23 165 1.9E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2185 37d8d796253ecd446a75e884ae6801b8 358 SUPERFAMILY SSF52540 8 246 6.01E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2185 37d8d796253ecd446a75e884ae6801b8 358 TIGRFAM TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein 6 356 1.8E-146 T 12-10-2018 IPR017666 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2 GO:0005524 ALFP_2185 37d8d796253ecd446a75e884ae6801b8 358 Gene3D G3DSA:3.40.50.300 6 247 4.0E-78 T 12-10-2018 ALFP_2185 37d8d796253ecd446a75e884ae6801b8 358 SUPERFAMILY SSF50331 241 331 2.55E-7 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal ALFP_3483 8e49b7ddbb243804ae408ad338904f08 529 SUPERFAMILY SSF55073 368 518 4.19E-46 T 12-10-2018 IPR029787 Nucleotide cyclase ALFP_3483 8e49b7ddbb243804ae408ad338904f08 529 Gene3D G3DSA:3.30.70.270 359 519 1.0E-50 T 12-10-2018 ALFP_3483 8e49b7ddbb243804ae408ad338904f08 529 SUPERFAMILY SSF103190 186 264 4.32E-9 T 12-10-2018 IPR029151 Periplasmic sensor-like domain superfamily ALFP_3483 8e49b7ddbb243804ae408ad338904f08 529 Pfam PF00990 Diguanylate cyclase, GGDEF domain 364 513 2.8E-40 T 12-10-2018 IPR000160 GGDEF domain ALFP_3483 8e49b7ddbb243804ae408ad338904f08 529 SMART SM00267 352 517 7.5E-48 T 12-10-2018 IPR000160 GGDEF domain ALFP_3483 8e49b7ddbb243804ae408ad338904f08 529 Gene3D G3DSA:3.30.450.20 32 177 5.8E-16 T 12-10-2018 ALFP_3483 8e49b7ddbb243804ae408ad338904f08 529 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 364 516 1.5E-43 T 12-10-2018 IPR000160 GGDEF domain ALFP_3483 8e49b7ddbb243804ae408ad338904f08 529 SUPERFAMILY SSF103190 64 181 6.28E-9 T 12-10-2018 IPR029151 Periplasmic sensor-like domain superfamily ALFP_3483 8e49b7ddbb243804ae408ad338904f08 529 Pfam PF02743 Cache domain 37 265 1.3E-20 T 12-10-2018 IPR033479 Double Cache domain 1 ALFP_3331 c94b31d27609a71f42d895194327d23e 299 SUPERFAMILY SSF46785 1 79 9.52E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3331 c94b31d27609a71f42d895194327d23e 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.9E-14 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3331 c94b31d27609a71f42d895194327d23e 299 Gene3D G3DSA:3.40.190.10 87 289 9.4E-41 T 12-10-2018 ALFP_3331 c94b31d27609a71f42d895194327d23e 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.0E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3331 c94b31d27609a71f42d895194327d23e 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.0E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3331 c94b31d27609a71f42d895194327d23e 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.0E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3331 c94b31d27609a71f42d895194327d23e 299 SUPERFAMILY SSF53850 85 292 2.17E-23 T 12-10-2018 ALFP_3331 c94b31d27609a71f42d895194327d23e 299 Gene3D G3DSA:1.10.10.10 1 82 3.6E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3331 c94b31d27609a71f42d895194327d23e 299 Gene3D G3DSA:3.40.190.10 167 265 9.4E-41 T 12-10-2018 ALFP_3331 c94b31d27609a71f42d895194327d23e 299 Pfam PF03466 LysR substrate binding domain 90 292 6.4E-10 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1334 665c0aff2eab59d57e01ea7c6afca367 154 SMART SM00347 26 127 7.0E-21 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1334 665c0aff2eab59d57e01ea7c6afca367 154 Gene3D G3DSA:1.10.10.10 3 142 3.7E-31 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1334 665c0aff2eab59d57e01ea7c6afca367 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 3.0E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1334 665c0aff2eab59d57e01ea7c6afca367 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 3.0E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1334 665c0aff2eab59d57e01ea7c6afca367 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 3.0E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1334 665c0aff2eab59d57e01ea7c6afca367 154 Pfam PF01047 MarR family 48 91 5.6E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1334 665c0aff2eab59d57e01ea7c6afca367 154 SUPERFAMILY SSF46785 7 141 3.8E-30 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1334 665c0aff2eab59d57e01ea7c6afca367 154 ProSitePatterns PS01117 MarR-type HTH domain signature. 66 100 - T 12-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site ALFP_0531 65460885b9a94487e15a59c495f735b4 297 Pfam PF03466 LysR substrate binding domain 88 293 4.8E-23 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0531 65460885b9a94487e15a59c495f735b4 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 7.6E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0531 65460885b9a94487e15a59c495f735b4 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 7.6E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0531 65460885b9a94487e15a59c495f735b4 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 7.6E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0531 65460885b9a94487e15a59c495f735b4 297 SUPERFAMILY SSF53850 89 295 2.17E-24 T 12-10-2018 ALFP_0531 65460885b9a94487e15a59c495f735b4 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 62 1.5E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0531 65460885b9a94487e15a59c495f735b4 297 Gene3D G3DSA:1.10.10.10 2 91 9.6E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0531 65460885b9a94487e15a59c495f735b4 297 Gene3D G3DSA:3.40.190.10 92 288 5.1E-38 T 12-10-2018 ALFP_0531 65460885b9a94487e15a59c495f735b4 297 SUPERFAMILY SSF46785 6 87 1.84E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0531 65460885b9a94487e15a59c495f735b4 297 Gene3D G3DSA:3.40.190.10 163 270 5.1E-38 T 12-10-2018 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 SUPERFAMILY SSF82693 38 131 1.15E-22 T 12-10-2018 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 SUPERFAMILY SSF82714 181 263 1.27E-14 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 SUPERFAMILY SSF82866 288 488 1.02E-46 T 12-10-2018 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 2.5E-74 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 PRINTS PR00702 Acriflavin resistance protein family signature 383 407 2.5E-74 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 PRINTS PR00702 Acriflavin resistance protein family signature 541 558 2.5E-74 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 PRINTS PR00702 Acriflavin resistance protein family signature 328 351 2.5E-74 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 PRINTS PR00702 Acriflavin resistance protein family signature 436 459 2.5E-74 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 PRINTS PR00702 Acriflavin resistance protein family signature 355 376 2.5E-74 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 PRINTS PR00702 Acriflavin resistance protein family signature 461 484 2.5E-74 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 2.5E-74 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 SUPERFAMILY SSF82866 814 1013 1.96E-43 T 12-10-2018 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 Gene3D G3DSA:3.30.2090.10 177 267 2.5E-287 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 Gene3D G3DSA:3.30.70.1440 652 850 2.5E-287 T 12-10-2018 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 Gene3D G3DSA:3.30.2090.10 704 792 2.5E-287 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 Gene3D G3DSA:1.20.1640.10 502 1008 2.5E-287 T 12-10-2018 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 SUPERFAMILY SSF82693 134 322 1.03E-23 T 12-10-2018 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 SUPERFAMILY SSF82693 663 841 4.29E-8 T 12-10-2018 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 Gene3D G3DSA:1.20.1640.10 8 501 2.5E-287 T 12-10-2018 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 SUPERFAMILY SSF82693 554 649 2.88E-13 T 12-10-2018 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 SUPERFAMILY SSF82714 706 789 2.09E-18 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 Pfam PF00873 AcrB/AcrD/AcrF family 1 1011 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 Gene3D G3DSA:3.30.70.1430 556 651 2.5E-287 T 12-10-2018 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 Gene3D G3DSA:3.30.70.1320 131 324 2.5E-287 T 12-10-2018 ALFP_3176 80723c017e200410864135afcbd8ef8b 1026 Gene3D G3DSA:3.30.70.1430 38 800 2.5E-287 T 12-10-2018 ALFP_0460 87db3416c6f066a991bcab27a80bd08a 509 Gene3D G3DSA:3.40.605.10 23 491 2.9E-168 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_0460 87db3416c6f066a991bcab27a80bd08a 509 SUPERFAMILY SSF53720 15 497 1.44E-159 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_0460 87db3416c6f066a991bcab27a80bd08a 509 Pfam PF00171 Aldehyde dehydrogenase family 27 493 1.3E-164 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_0460 87db3416c6f066a991bcab27a80bd08a 509 Gene3D G3DSA:3.40.309.10 270 463 2.9E-168 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_0460 87db3416c6f066a991bcab27a80bd08a 509 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 265 272 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 ALFP_1549 9b519dcf817be03d1001830d4caad7aa 274 Gene3D G3DSA:3.40.1190.20 1 270 1.8E-98 T 12-10-2018 IPR029056 Ribokinase-like ALFP_1549 9b519dcf817be03d1001830d4caad7aa 274 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 5 261 9.8E-89 T 12-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 ALFP_1549 9b519dcf817be03d1001830d4caad7aa 274 Pfam PF08543 Phosphomethylpyrimidine kinase 12 259 4.2E-87 T 12-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 ALFP_1549 9b519dcf817be03d1001830d4caad7aa 274 SUPERFAMILY SSF53613 1 265 2.96E-75 T 12-10-2018 IPR029056 Ribokinase-like ALFP_0177 fc506d1746f7ce655d2dc6716a3ad2a7 522 Pfam PF01425 Amidase 69 500 4.9E-82 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_0177 fc506d1746f7ce655d2dc6716a3ad2a7 522 Gene3D G3DSA:3.90.1300.10 43 520 1.0E-128 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_0177 fc506d1746f7ce655d2dc6716a3ad2a7 522 SUPERFAMILY SSF75304 47 517 1.83E-119 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_0761 e41409fec740dac241d1bcc10c9a748a 266 SUPERFAMILY SSF69572 6 266 1.44E-51 T 12-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 ALFP_0761 e41409fec740dac241d1bcc10c9a748a 266 Pfam PF00899 ThiF family 23 160 2.4E-27 T 12-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 ALFP_0761 e41409fec740dac241d1bcc10c9a748a 266 Gene3D G3DSA:3.40.50.720 4 266 6.3E-81 T 12-10-2018 ALFP_3149 0be1402cbbfdde6a3c6527fb4c3e7cf8 363 Gene3D G3DSA:1.10.1670.10 14 220 3.4E-84 T 12-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 ALFP_3149 0be1402cbbfdde6a3c6527fb4c3e7cf8 363 SUPERFAMILY SSF48150 9 233 4.55E-69 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 ALFP_3149 0be1402cbbfdde6a3c6527fb4c3e7cf8 363 SUPERFAMILY SSF55811 229 348 1.5E-21 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 ALFP_3149 0be1402cbbfdde6a3c6527fb4c3e7cf8 363 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 11 279 4.0E-104 T 12-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 ALFP_3149 0be1402cbbfdde6a3c6527fb4c3e7cf8 363 Pfam PF14815 NUDIX domain 244 348 1.4E-21 T 12-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 ALFP_3149 0be1402cbbfdde6a3c6527fb4c3e7cf8 363 Gene3D G3DSA:1.10.340.30 26 137 3.4E-84 T 12-10-2018 ALFP_3149 0be1402cbbfdde6a3c6527fb4c3e7cf8 363 SMART SM00478 44 199 2.2E-41 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 ALFP_3149 0be1402cbbfdde6a3c6527fb4c3e7cf8 363 Gene3D G3DSA:3.90.79.10 233 358 9.6E-15 T 12-10-2018 ALFP_3149 0be1402cbbfdde6a3c6527fb4c3e7cf8 363 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 41 170 1.4E-18 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 ALFP_2683 a24f7c4ae72fc01e6bcaf6bedc199458 300 Gene3D G3DSA:3.40.50.1820 37 299 3.1E-73 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2683 a24f7c4ae72fc01e6bcaf6bedc199458 300 SUPERFAMILY SSF53474 38 295 5.08E-57 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2683 a24f7c4ae72fc01e6bcaf6bedc199458 300 Pfam PF00756 Putative esterase 59 278 1.1E-14 T 12-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 ALFP_0602 e5ba191b4f7d3679cc9296835b160bff 426 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 292 3.2E-23 T 12-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 ALFP_0602 e5ba191b4f7d3679cc9296835b160bff 426 SUPERFAMILY SSF52413 302 419 2.09E-29 T 12-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 ALFP_0602 e5ba191b4f7d3679cc9296835b160bff 426 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 320 419 4.5E-21 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 ALFP_0602 e5ba191b4f7d3679cc9296835b160bff 426 SUPERFAMILY SSF48179 202 294 2.89E-25 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_0602 e5ba191b4f7d3679cc9296835b160bff 426 Gene3D G3DSA:3.40.50.720 1 199 7.6E-59 T 12-10-2018 ALFP_0602 e5ba191b4f7d3679cc9296835b160bff 426 SUPERFAMILY SSF51735 9 191 7.89E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0602 e5ba191b4f7d3679cc9296835b160bff 426 SMART SM00984 319 419 5.8E-37 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 ALFP_0602 e5ba191b4f7d3679cc9296835b160bff 426 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 9 182 6.1E-34 T 12-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 ALFP_0602 e5ba191b4f7d3679cc9296835b160bff 426 PIRSF PIRSF000124 8 423 7.3E-54 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 ALFP_0602 e5ba191b4f7d3679cc9296835b160bff 426 Gene3D G3DSA:3.40.50.720 203 425 2.0E-56 T 12-10-2018 ALFP_0602 e5ba191b4f7d3679cc9296835b160bff 426 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 9 413 1.1E-120 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 ALFP_0602 e5ba191b4f7d3679cc9296835b160bff 426 PIRSF PIRSF500136 1 426 1.8E-152 T 12-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 ALFP_2753 9ded99ebcbbf314baecdbbaf1751a2e6 474 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 66 3.7E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2753 9ded99ebcbbf314baecdbbaf1751a2e6 474 SMART SM00345 7 66 1.5E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2753 9ded99ebcbbf314baecdbbaf1751a2e6 474 Gene3D G3DSA:3.40.640.10 143 361 4.2E-104 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2753 9ded99ebcbbf314baecdbbaf1751a2e6 474 SUPERFAMILY SSF46785 2 68 1.72E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2753 9ded99ebcbbf314baecdbbaf1751a2e6 474 Gene3D G3DSA:3.90.1150.10 96 465 4.2E-104 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_2753 9ded99ebcbbf314baecdbbaf1751a2e6 474 Pfam PF00155 Aminotransferase class I and II 147 451 1.7E-33 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_2753 9ded99ebcbbf314baecdbbaf1751a2e6 474 SUPERFAMILY SSF53383 96 468 3.5E-95 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2753 9ded99ebcbbf314baecdbbaf1751a2e6 474 Gene3D G3DSA:1.10.10.10 1 68 1.1E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2462 65a7ea587ffafbdbec8c653cecb85e16 486 Pfam PF00083 Sugar (and other) transporter 97 485 5.1E-40 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ALFP_2462 65a7ea587ffafbdbec8c653cecb85e16 486 SUPERFAMILY SSF103473 43 485 5.62E-77 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2462 65a7ea587ffafbdbec8c653cecb85e16 486 Gene3D G3DSA:1.20.1250.20 58 481 3.1E-77 T 12-10-2018 ALFP_1454 4d282dc10bbe898d13c1ca3e79c65584 378 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 100 138 - T 12-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 ALFP_1454 4d282dc10bbe898d13c1ca3e79c65584 378 Pfam PF01546 Peptidase family M20/M25/M40 66 374 1.5E-46 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 ALFP_1454 4d282dc10bbe898d13c1ca3e79c65584 378 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 5 378 50.997 T 12-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 ALFP_1454 4d282dc10bbe898d13c1ca3e79c65584 378 Pfam PF07687 Peptidase dimerisation domain 178 283 1.8E-24 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain ALFP_1454 4d282dc10bbe898d13c1ca3e79c65584 378 SUPERFAMILY SSF53187 5 376 1.96E-66 T 12-10-2018 ALFP_1454 4d282dc10bbe898d13c1ca3e79c65584 378 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 8 376 5.6E-159 T 12-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 ALFP_1454 4d282dc10bbe898d13c1ca3e79c65584 378 Gene3D G3DSA:3.30.70.360 182 295 2.3E-130 T 12-10-2018 ALFP_1454 4d282dc10bbe898d13c1ca3e79c65584 378 SUPERFAMILY SSF55031 182 291 1.45E-27 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain ALFP_1454 4d282dc10bbe898d13c1ca3e79c65584 378 Gene3D G3DSA:3.40.630.10 11 365 2.3E-130 T 12-10-2018 ALFP_1991 343ec50aa745fac67530521de15ab802 705 Pfam PF00679 Elongation factor G C-terminus 606 693 3.9E-30 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like ALFP_1991 343ec50aa745fac67530521de15ab802 705 Pfam PF03764 Elongation factor G, domain IV 484 604 6.9E-47 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 ALFP_1991 343ec50aa745fac67530521de15ab802 705 SMART SM00889 485 604 5.7E-72 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 ALFP_1991 343ec50aa745fac67530521de15ab802 705 SUPERFAMILY SSF54980 407 485 2.73E-25 T 12-10-2018 IPR035647 EF-G domain III/V-like ALFP_1991 343ec50aa745fac67530521de15ab802 705 Pfam PF03144 Elongation factor Tu domain 2 329 396 4.8E-17 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 ALFP_1991 343ec50aa745fac67530521de15ab802 705 SUPERFAMILY SSF54211 484 605 1.87E-44 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_1991 343ec50aa745fac67530521de15ab802 705 Gene3D G3DSA:3.30.230.10 489 693 1.4E-88 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ALFP_1991 343ec50aa745fac67530521de15ab802 705 Gene3D G3DSA:3.30.70.870 438 488 3.5E-26 T 12-10-2018 ALFP_1991 343ec50aa745fac67530521de15ab802 705 Gene3D G3DSA:2.40.30.10 299 421 4.0E-50 T 12-10-2018 ALFP_1991 343ec50aa745fac67530521de15ab802 705 Pfam PF14492 Elongation Factor G, domain II 409 483 7.4E-34 T 12-10-2018 ALFP_1991 343ec50aa745fac67530521de15ab802 705 SUPERFAMILY SSF54980 609 700 4.7E-28 T 12-10-2018 IPR035647 EF-G domain III/V-like ALFP_1991 343ec50aa745fac67530521de15ab802 705 PRINTS PR00315 GTP-binding elongation factor signature 85 95 4.3E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_1991 343ec50aa745fac67530521de15ab802 705 PRINTS PR00315 GTP-binding elongation factor signature 12 25 4.3E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_1991 343ec50aa745fac67530521de15ab802 705 PRINTS PR00315 GTP-binding elongation factor signature 137 146 4.3E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_1991 343ec50aa745fac67530521de15ab802 705 PRINTS PR00315 GTP-binding elongation factor signature 101 112 4.3E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_1991 343ec50aa745fac67530521de15ab802 705 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.3E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_1991 343ec50aa745fac67530521de15ab802 705 Hamap MF_00054_B Elongation factor G [fusA]. 6 698 109.197 T 12-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 ALFP_1991 343ec50aa745fac67530521de15ab802 705 SUPERFAMILY SSF52540 6 288 1.15E-103 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1991 343ec50aa745fac67530521de15ab802 705 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 184 2.6E-31 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 ALFP_1991 343ec50aa745fac67530521de15ab802 705 Gene3D G3DSA:3.40.50.300 1 298 1.3E-108 T 12-10-2018 ALFP_1991 343ec50aa745fac67530521de15ab802 705 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site ALFP_1991 343ec50aa745fac67530521de15ab802 705 SUPERFAMILY SSF50447 256 407 2.12E-36 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily ALFP_1991 343ec50aa745fac67530521de15ab802 705 Gene3D G3DSA:3.30.70.240 610 681 1.4E-88 T 12-10-2018 ALFP_1991 343ec50aa745fac67530521de15ab802 705 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 699 0.0 T 12-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 ALFP_1991 343ec50aa745fac67530521de15ab802 705 SMART SM00838 606 694 2.8E-53 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like ALFP_1991 343ec50aa745fac67530521de15ab802 705 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 2.9E-65 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_2144 d98f6fcc26d75c5e9bc9768434b4557f 365 SUPERFAMILY SSF52540 3 244 4.52E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2144 d98f6fcc26d75c5e9bc9768434b4557f 365 SMART SM00382 27 214 5.5E-20 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2144 d98f6fcc26d75c5e9bc9768434b4557f 365 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 243 3.7E-117 T 12-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 ALFP_2144 d98f6fcc26d75c5e9bc9768434b4557f 365 Pfam PF12857 TOBE-like domain 294 349 7.6E-13 T 12-10-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 ALFP_2144 d98f6fcc26d75c5e9bc9768434b4557f 365 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_2144 d98f6fcc26d75c5e9bc9768434b4557f 365 Pfam PF00005 ABC transporter 19 164 4.0E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2144 d98f6fcc26d75c5e9bc9768434b4557f 365 Gene3D G3DSA:3.40.50.300 2 269 2.6E-81 T 12-10-2018 ALFP_2144 d98f6fcc26d75c5e9bc9768434b4557f 365 SUPERFAMILY SSF50331 264 351 8.93E-6 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal ALFP_0362 5619e957de587346b155af8ea6e7615c 1517 Pfam PF04898 Glutamate synthase central domain 414 700 1.9E-109 T 12-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 ALFP_0362 5619e957de587346b155af8ea6e7615c 1517 Gene3D G3DSA:3.20.20.70 748 1212 2.0E-204 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0362 5619e957de587346b155af8ea6e7615c 1517 Gene3D G3DSA:2.160.20.60 1213 1504 2.9E-105 T 12-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 ALFP_0362 5619e957de587346b155af8ea6e7615c 1517 Pfam PF01493 GXGXG motif 1238 1425 3.6E-79 T 12-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 ALFP_0362 5619e957de587346b155af8ea6e7615c 1517 SUPERFAMILY SSF69336 1207 1494 7.85E-91 T 12-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 ALFP_0362 5619e957de587346b155af8ea6e7615c 1517 Gene3D G3DSA:3.60.20.10 1 394 8.7E-161 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal ALFP_0362 5619e957de587346b155af8ea6e7615c 1517 Gene3D G3DSA:3.20.20.70 395 747 7.3E-133 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0362 5619e957de587346b155af8ea6e7615c 1517 SUPERFAMILY SSF56235 2 388 3.86E-135 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal ALFP_0362 5619e957de587346b155af8ea6e7615c 1517 Pfam PF00310 Glutamine amidotransferases class-II 2 385 8.4E-164 T 12-10-2018 IPR017932 Glutamine amidotransferase type 2 domain ALFP_0362 5619e957de587346b155af8ea6e7615c 1517 Pfam PF01645 Conserved region in glutamate synthase 764 1160 1.0E-155 T 12-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 ALFP_0362 5619e957de587346b155af8ea6e7615c 1517 SUPERFAMILY SSF51395 404 1195 1.99E-258 T 12-10-2018 ALFP_3544 40c58fdde1b31fbcf19116b380d806f9 576 PIRSF PIRSF001423 10 576 9.0E-291 T 12-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 ALFP_3544 40c58fdde1b31fbcf19116b380d806f9 576 Pfam PF17391 Urocanase N-terminal domain 26 152 3.4E-61 T 12-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 ALFP_3544 40c58fdde1b31fbcf19116b380d806f9 576 ProSitePatterns PS01233 Urocanase signature. 462 477 - T 12-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 ALFP_3544 40c58fdde1b31fbcf19116b380d806f9 576 Pfam PF17392 Urocanase C-terminal domain 372 566 9.3E-94 T 12-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 ALFP_3544 40c58fdde1b31fbcf19116b380d806f9 576 Pfam PF01175 Urocanase Rossmann-like domain 155 369 9.7E-82 T 12-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 ALFP_3544 40c58fdde1b31fbcf19116b380d806f9 576 Gene3D G3DSA:3.40.50.10730 156 369 6.9E-251 T 12-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 ALFP_3544 40c58fdde1b31fbcf19116b380d806f9 576 SUPERFAMILY SSF111326 19 575 2.75E-255 T 12-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 ALFP_3544 40c58fdde1b31fbcf19116b380d806f9 576 TIGRFAM TIGR01228 hutU: urocanate hydratase 24 574 3.9E-285 T 12-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 ALFP_3544 40c58fdde1b31fbcf19116b380d806f9 576 Hamap MF_00577 Urocanate hydratase [hutU]. 9 576 50.432 T 12-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 ALFP_3544 40c58fdde1b31fbcf19116b380d806f9 576 Gene3D G3DSA:3.40.1770.10 31 562 6.9E-251 T 12-10-2018 ALFP_2863 923b6e5e631353374b5862d7384fc2db 478 Gene3D G3DSA:3.40.640.10 146 363 2.0E-74 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2863 923b6e5e631353374b5862d7384fc2db 478 SUPERFAMILY SSF46785 12 86 3.04E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2863 923b6e5e631353374b5862d7384fc2db 478 Pfam PF00392 Bacterial regulatory proteins, gntR family 31 78 8.6E-12 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2863 923b6e5e631353374b5862d7384fc2db 478 Gene3D G3DSA:3.90.1150.10 118 453 2.0E-74 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_2863 923b6e5e631353374b5862d7384fc2db 478 SUPERFAMILY SSF53383 126 454 3.13E-73 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2863 923b6e5e631353374b5862d7384fc2db 478 Gene3D G3DSA:1.10.10.10 17 90 2.5E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2863 923b6e5e631353374b5862d7384fc2db 478 Pfam PF00155 Aminotransferase class I and II 127 452 3.8E-28 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_2863 923b6e5e631353374b5862d7384fc2db 478 SMART SM00345 20 78 3.6E-11 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1401 cec4a9e028c63e01f0b5444972c4f26b 87 Pfam PF01649 Ribosomal protein S20 2 84 7.2E-26 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_1401 cec4a9e028c63e01f0b5444972c4f26b 87 SUPERFAMILY SSF46992 3 86 4.97E-30 T 12-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_1401 cec4a9e028c63e01f0b5444972c4f26b 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 20 86 3.0E-24 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_1401 cec4a9e028c63e01f0b5444972c4f26b 87 Gene3D G3DSA:1.20.58.110 1 87 2.1E-28 T 12-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_1401 cec4a9e028c63e01f0b5444972c4f26b 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.75 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_1401 cec4a9e028c63e01f0b5444972c4f26b 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 1.2E-27 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_2737 c96d2dbdd9da7f88502dbb663e7e977d 663 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 13 495 5.5E-195 T 12-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 ALFP_2737 c96d2dbdd9da7f88502dbb663e7e977d 663 ProSitePatterns PS01303 BCCT family of transporters signature. 313 322 - T 12-10-2018 IPR018093 BCCT transporter, conserved site ALFP_2737 c96d2dbdd9da7f88502dbb663e7e977d 663 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 51 496 4.7E-164 T 12-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 ALFP_2434 b291b313ecdd6d7f5e67b1574be2648a 486 Gene3D G3DSA:3.30.2290.10 24 245 2.6E-18 T 12-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal ALFP_2434 b291b313ecdd6d7f5e67b1574be2648a 486 Pfam PF01523 Putative modulator of DNA gyrase 43 337 3.2E-68 T 12-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 ALFP_2434 b291b313ecdd6d7f5e67b1574be2648a 486 PIRSF PIRSF004919 24 486 7.7E-136 T 12-10-2018 IPR025502 TldD ALFP_2434 b291b313ecdd6d7f5e67b1574be2648a 486 SUPERFAMILY SSF111283 26 485 9.94E-132 T 12-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 ALFP_1662 9cffcf7e141c2c6a21cb6ac8aa7a6320 571 Pfam PF06505 Activator of aromatic catabolism 17 117 1.5E-35 T 12-10-2018 IPR010523 Activator of aromatic catabolism ALFP_1662 9cffcf7e141c2c6a21cb6ac8aa7a6320 571 SUPERFAMILY SSF111126 30 185 7.85E-13 T 12-10-2018 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily ALFP_1662 9cffcf7e141c2c6a21cb6ac8aa7a6320 571 Gene3D G3DSA:1.10.8.60 412 478 6.0E-25 T 12-10-2018 ALFP_1662 9cffcf7e141c2c6a21cb6ac8aa7a6320 571 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 265 278 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 ALFP_1662 9cffcf7e141c2c6a21cb6ac8aa7a6320 571 Gene3D G3DSA:3.40.50.300 227 411 2.6E-64 T 12-10-2018 ALFP_1662 9cffcf7e141c2c6a21cb6ac8aa7a6320 571 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 550 570 3.0E-10 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_1662 9cffcf7e141c2c6a21cb6ac8aa7a6320 571 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 533 550 3.0E-10 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_1662 9cffcf7e141c2c6a21cb6ac8aa7a6320 571 Gene3D G3DSA:3.30.1380.20 34 195 2.0E-9 T 12-10-2018 ALFP_1662 9cffcf7e141c2c6a21cb6ac8aa7a6320 571 SUPERFAMILY SSF46689 454 568 3.45E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1662 9cffcf7e141c2c6a21cb6ac8aa7a6320 571 Pfam PF02954 Bacterial regulatory protein, Fis family 527 566 1.9E-13 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_1662 9cffcf7e141c2c6a21cb6ac8aa7a6320 571 ProDom PD485437 REGULATOR TRANSCRIPTIONAL FIS-TYPE HELIX-TURN-HELIX ACTIVATOR PLASMID FAMILY PHENOL-DEGRADATIVE FIS SIGMA-54 16 135 3.0E-33 T 12-10-2018 IPR010523 Activator of aromatic catabolism ALFP_1662 9cffcf7e141c2c6a21cb6ac8aa7a6320 571 Pfam PF02830 V4R domain 129 190 3.0E-16 T 12-10-2018 IPR004096 4-vinyl reductase, 4VR ALFP_1662 9cffcf7e141c2c6a21cb6ac8aa7a6320 571 Gene3D G3DSA:1.10.10.60 523 568 2.7E-13 T 12-10-2018 ALFP_1662 9cffcf7e141c2c6a21cb6ac8aa7a6320 571 Pfam PF00158 Sigma-54 interaction domain 242 408 7.4E-68 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 ALFP_1662 9cffcf7e141c2c6a21cb6ac8aa7a6320 571 SMART SM00382 261 405 9.5E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1662 9cffcf7e141c2c6a21cb6ac8aa7a6320 571 SUPERFAMILY SSF52540 242 483 4.76E-70 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1662 9cffcf7e141c2c6a21cb6ac8aa7a6320 571 SMART SM00989 128 190 1.5E-22 T 12-10-2018 IPR004096 4-vinyl reductase, 4VR ALFP_0347 32cba37ed3897fed355ddbe3e2f93c46 496 Gene3D G3DSA:3.40.605.10 28 487 4.5E-188 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_0347 32cba37ed3897fed355ddbe3e2f93c46 496 Pfam PF00171 Aldehyde dehydrogenase family 26 489 1.2E-176 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_0347 32cba37ed3897fed355ddbe3e2f93c46 496 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 265 272 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 ALFP_0347 32cba37ed3897fed355ddbe3e2f93c46 496 Gene3D G3DSA:3.40.309.10 269 458 4.5E-188 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_0347 32cba37ed3897fed355ddbe3e2f93c46 496 SUPERFAMILY SSF53720 13 492 7.59E-172 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_0347 32cba37ed3897fed355ddbe3e2f93c46 496 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 293 304 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 ALFP_2536 1dbf37d4ddda4145535353ebd60d4520 269 Gene3D G3DSA:1.10.101.10 191 269 1.6E-22 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 ALFP_2536 1dbf37d4ddda4145535353ebd60d4520 269 SUPERFAMILY SSF55846 38 192 2.09E-49 T 12-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 ALFP_2536 1dbf37d4ddda4145535353ebd60d4520 269 Pfam PF01471 Putative peptidoglycan binding domain 216 265 4.2E-9 T 12-10-2018 IPR002477 Peptidoglycan binding-like ALFP_2536 1dbf37d4ddda4145535353ebd60d4520 269 SUPERFAMILY SSF47090 205 268 5.89E-18 T 12-10-2018 IPR036365 PGBD-like superfamily ALFP_2536 1dbf37d4ddda4145535353ebd60d4520 269 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 47 177 3.4E-29 T 12-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 ALFP_2536 1dbf37d4ddda4145535353ebd60d4520 269 SMART SM00644 38 176 3.8E-33 T 12-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 ALFP_2536 1dbf37d4ddda4145535353ebd60d4520 269 Gene3D G3DSA:3.40.80.10 48 190 1.8E-49 T 12-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 ALFP_2545 2f0bde63cab1e5be2c6d46ba8c57dde0 756 SUPERFAMILY SSF81301 203 381 1.44E-58 T 12-10-2018 ALFP_2545 2f0bde63cab1e5be2c6d46ba8c57dde0 756 Pfam PF02824 TGS domain 431 489 2.8E-20 T 12-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 ALFP_2545 2f0bde63cab1e5be2c6d46ba8c57dde0 756 SUPERFAMILY SSF81271 429 489 2.4E-18 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 ALFP_2545 2f0bde63cab1e5be2c6d46ba8c57dde0 756 Gene3D G3DSA:3.10.20.30 427 495 4.5E-27 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_2545 2f0bde63cab1e5be2c6d46ba8c57dde0 756 Pfam PF04607 Region found in RelA / SpoT proteins 246 355 9.6E-37 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 ALFP_2545 2f0bde63cab1e5be2c6d46ba8c57dde0 756 Gene3D G3DSA:3.30.70.260 678 755 2.7E-13 T 12-10-2018 ALFP_2545 2f0bde63cab1e5be2c6d46ba8c57dde0 756 SUPERFAMILY SSF109604 7 202 2.61E-38 T 12-10-2018 ALFP_2545 2f0bde63cab1e5be2c6d46ba8c57dde0 756 SMART SM00954 246 356 1.0E-62 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 ALFP_2545 2f0bde63cab1e5be2c6d46ba8c57dde0 756 Gene3D G3DSA:3.30.460.10 204 336 2.9E-48 T 12-10-2018 ALFP_2545 2f0bde63cab1e5be2c6d46ba8c57dde0 756 Gene3D G3DSA:1.10.3210.10 4 202 4.6E-40 T 12-10-2018 ALFP_2545 2f0bde63cab1e5be2c6d46ba8c57dde0 756 Pfam PF13328 HD domain 29 187 2.4E-43 T 12-10-2018 IPR003607 HD/PDEase domain ALFP_2545 2f0bde63cab1e5be2c6d46ba8c57dde0 756 Pfam PF13291 ACT domain 678 749 3.2E-11 T 12-10-2018 IPR002912 ACT domain ALFP_2545 2f0bde63cab1e5be2c6d46ba8c57dde0 756 SUPERFAMILY SSF55021 679 749 9.99E-9 T 12-10-2018 ALFP_0955 9ce36d43ee37ed1d03051f8c3eb27865 332 Gene3D G3DSA:3.20.20.30 3 329 5.7E-99 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 ALFP_0955 9ce36d43ee37ed1d03051f8c3eb27865 332 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 7 326 9.5E-134 T 12-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 ALFP_0955 9ce36d43ee37ed1d03051f8c3eb27865 332 Pfam PF00296 Luciferase-like monooxygenase 20 298 1.1E-40 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ALFP_0955 9ce36d43ee37ed1d03051f8c3eb27865 332 SUPERFAMILY SSF51679 7 326 1.57E-90 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 ALFP_3342 c89a80264ba71aa8631938ce0044b9f1 196 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 49 67 - T 12-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 ALFP_3342 c89a80264ba71aa8631938ce0044b9f1 196 Gene3D G3DSA:3.40.50.740 108 196 4.8E-32 T 12-10-2018 ALFP_3342 c89a80264ba71aa8631938ce0044b9f1 196 SMART SM00926 44 105 8.5E-22 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_3342 c89a80264ba71aa8631938ce0044b9f1 196 SUPERFAMILY SSF53706 37 196 7.46E-52 T 12-10-2018 ALFP_3342 c89a80264ba71aa8631938ce0044b9f1 196 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 44 104 7.6E-18 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_3342 c89a80264ba71aa8631938ce0044b9f1 196 Pfam PF00384 Molybdopterin oxidoreductase 108 165 9.6E-7 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_3342 c89a80264ba71aa8631938ce0044b9f1 196 Gene3D G3DSA:2.20.25.90 44 105 5.5E-17 T 12-10-2018 ALFP_2834 a8f047ae0a352812914d81c559594f1d 361 Gene3D G3DSA:2.40.50.140 288 352 1.1E-9 T 12-10-2018 ALFP_2834 a8f047ae0a352812914d81c559594f1d 361 Gene3D G3DSA:3.40.50.300 1 246 5.8E-69 T 12-10-2018 ALFP_2834 a8f047ae0a352812914d81c559594f1d 361 Pfam PF08402 TOBE domain 285 359 8.0E-14 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 ALFP_2834 a8f047ae0a352812914d81c559594f1d 361 Pfam PF00005 ABC transporter 22 170 2.3E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2834 a8f047ae0a352812914d81c559594f1d 361 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_2834 a8f047ae0a352812914d81c559594f1d 361 SMART SM00382 31 228 3.5E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2834 a8f047ae0a352812914d81c559594f1d 361 SUPERFAMILY SSF52540 3 252 6.25E-78 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2834 a8f047ae0a352812914d81c559594f1d 361 Gene3D G3DSA:2.40.50.100 253 360 1.1E-9 T 12-10-2018 ALFP_2834 a8f047ae0a352812914d81c559594f1d 361 SUPERFAMILY SSF50331 246 359 3.12E-15 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal ALFP_3315 87ccf36e07d022978b0c46b448354894 240 Pfam PF13649 Methyltransferase domain 36 118 2.2E-6 T 12-10-2018 ALFP_3315 87ccf36e07d022978b0c46b448354894 240 SUPERFAMILY SSF53335 7 152 5.25E-24 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_3315 87ccf36e07d022978b0c46b448354894 240 Gene3D G3DSA:3.40.50.150 8 163 5.6E-42 T 12-10-2018 ALFP_0719 068e0dd4318592db068c4273350eed0f 418 SUPERFAMILY SSF50022 33 174 7.07E-43 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_0719 068e0dd4318592db068c4273350eed0f 418 SUPERFAMILY SSF55961 177 401 7.6E-25 T 12-10-2018 ALFP_0719 068e0dd4318592db068c4273350eed0f 418 Gene3D G3DSA:3.90.380.10 38 394 7.0E-63 T 12-10-2018 ALFP_0719 068e0dd4318592db068c4273350eed0f 418 Gene3D G3DSA:2.102.10.10 60 180 7.0E-63 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_0719 068e0dd4318592db068c4273350eed0f 418 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 118 138 8.2E-18 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_0719 068e0dd4318592db068c4273350eed0f 418 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 160 186 8.2E-18 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_0719 068e0dd4318592db068c4273350eed0f 418 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 47 72 8.2E-18 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_0719 068e0dd4318592db068c4273350eed0f 418 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 77 92 8.2E-18 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_0719 068e0dd4318592db068c4273350eed0f 418 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 199 398 7.2E-22 T 12-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 ALFP_0719 068e0dd4318592db068c4273350eed0f 418 Pfam PF00355 Rieske [2Fe-2S] domain 62 143 4.7E-16 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ALFP_0563 9bf608d372199e994eefc773c3cc6589 469 Pfam PF13302 Acetyltransferase (GNAT) domain 55 175 2.0E-13 T 12-10-2018 IPR000182 GNAT domain ALFP_0563 9bf608d372199e994eefc773c3cc6589 469 Gene3D G3DSA:1.10.4010.10 236 458 1.5E-55 T 12-10-2018 ALFP_0563 9bf608d372199e994eefc773c3cc6589 469 Gene3D G3DSA:3.40.630.30 16 235 3.3E-63 T 12-10-2018 ALFP_0563 9bf608d372199e994eefc773c3cc6589 469 SUPERFAMILY SSF55729 27 199 1.46E-35 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_0563 9bf608d372199e994eefc773c3cc6589 469 Pfam PF08761 dUTPase 245 402 5.1E-30 T 12-10-2018 IPR014871 dUTPase/dCTP pyrophosphatase KEGG: 00240+3.6.1.12 ALFP_0563 9bf608d372199e994eefc773c3cc6589 469 SUPERFAMILY SSF101386 244 447 5.67E-43 T 12-10-2018 ALFP_1996 ea762298011298eea2e4dedd2643f544 245 Gene3D G3DSA:3.20.20.70 1 244 9.3E-104 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_1996 ea762298011298eea2e4dedd2643f544 245 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 3 235 1.1E-100 T 12-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 ALFP_1996 ea762298011298eea2e4dedd2643f544 245 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 4 237 4.7E-94 T 12-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 ALFP_1996 ea762298011298eea2e4dedd2643f544 245 SUPERFAMILY SSF63892 1 237 2.48E-96 T 12-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 ALFP_1996 ea762298011298eea2e4dedd2643f544 245 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 241 127.142 T 12-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 ALFP_3194 849fdcec8c9998274c0c80d3895e4910 571 Pfam PF00690 Cation transporter/ATPase, N-terminus 34 70 1.1E-4 T 12-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 ALFP_3194 849fdcec8c9998274c0c80d3895e4910 571 Gene3D G3DSA:2.40.160.10 223 571 8.6E-68 T 12-10-2018 IPR023614 Porin domain superfamily ALFP_3194 849fdcec8c9998274c0c80d3895e4910 571 SUPERFAMILY SSF81653 103 183 1.19E-12 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 ALFP_3194 849fdcec8c9998274c0c80d3895e4910 571 Pfam PF13609 Gram-negative porin 221 544 9.1E-45 T 12-10-2018 ALFP_3194 849fdcec8c9998274c0c80d3895e4910 571 Pfam PF00122 E1-E2 ATPase 88 184 6.7E-12 T 12-10-2018 ALFP_3194 849fdcec8c9998274c0c80d3895e4910 571 Gene3D G3DSA:2.60.120.1500 100 181 6.2E-13 T 12-10-2018 ALFP_3194 849fdcec8c9998274c0c80d3895e4910 571 SUPERFAMILY SSF56935 231 571 6.41E-58 T 12-10-2018 ALFP_3139 2e9839dafdbef5ac088a2b1c436eed09 125 SMART SM00530 7 61 9.5E-16 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_3139 2e9839dafdbef5ac088a2b1c436eed09 125 SUPERFAMILY SSF47413 2 68 1.34E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_3139 2e9839dafdbef5ac088a2b1c436eed09 125 Gene3D G3DSA:1.10.260.40 1 69 4.3E-21 T 12-10-2018 ALFP_3139 2e9839dafdbef5ac088a2b1c436eed09 125 Pfam PF01381 Helix-turn-helix 8 61 6.8E-14 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_1205 0809bdd1cd5f9f75b4947663716b52d4 249 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 173 244 5.6E-21 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain ALFP_1205 0809bdd1cd5f9f75b4947663716b52d4 249 Pfam PF00460 Flagella basal body rod protein 5 35 1.9E-10 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 ALFP_1205 0809bdd1cd5f9f75b4947663716b52d4 249 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 225 5.5E-58 T 12-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 ALFP_1205 0809bdd1cd5f9f75b4947663716b52d4 249 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 122 2.7E-38 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G ALFP_1205 0809bdd1cd5f9f75b4947663716b52d4 249 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site ALFP_1205 0809bdd1cd5f9f75b4947663716b52d4 249 SUPERFAMILY SSF117143 79 206 3.66E-18 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like ALFP_3543 ceef442cd3fa0b1593fbcbfd20fae93c 511 SUPERFAMILY SSF48557 2 502 3.69E-188 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 ALFP_3543 ceef442cd3fa0b1593fbcbfd20fae93c 511 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 4 509 45.319 T 12-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 ALFP_3543 ceef442cd3fa0b1593fbcbfd20fae93c 511 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 5 507 6.2E-212 T 12-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 ALFP_3543 ceef442cd3fa0b1593fbcbfd20fae93c 511 Gene3D G3DSA:1.20.200.10 199 509 1.4E-116 T 12-10-2018 ALFP_3543 ceef442cd3fa0b1593fbcbfd20fae93c 511 Gene3D G3DSA:1.10.275.10 4 198 5.8E-69 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal ALFP_3543 ceef442cd3fa0b1593fbcbfd20fae93c 511 Pfam PF00221 Aromatic amino acid lyase 12 476 1.1E-187 T 12-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 ALFP_3543 ceef442cd3fa0b1593fbcbfd20fae93c 511 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 140 156 - T 12-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 ALFP_2903 f3652e1fa6f75f38c6587583acabecb3 134 SUPERFAMILY SSF141673 32 130 1.7E-16 T 12-10-2018 ALFP_2903 f3652e1fa6f75f38c6587583acabecb3 134 Pfam PF03476 MOSC N-terminal beta barrel domain 38 123 6.8E-9 T 12-10-2018 IPR005303 MOSC, N-terminal beta barrel KEGG: 00790+2.8.1.9|MetaCyc: PWY-5963 ALFP_2437 186bf731665b6ef84051a5d3130ffec0 892 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 463 567 1.5E-24 T 12-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold ALFP_2437 186bf731665b6ef84051a5d3130ffec0 892 Gene3D G3DSA:2.60.40.1840 463 568 2.3E-28 T 12-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily ALFP_2437 186bf731665b6ef84051a5d3130ffec0 892 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 571 890 2.7E-107 T 12-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal ALFP_2437 186bf731665b6ef84051a5d3130ffec0 892 Gene3D G3DSA:1.10.390.10 283 462 3.7E-62 T 12-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily ALFP_2437 186bf731665b6ef84051a5d3130ffec0 892 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 13 890 0.0 T 12-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 ALFP_2437 186bf731665b6ef84051a5d3130ffec0 892 SUPERFAMILY SSF55486 213 469 4.25E-68 T 12-10-2018 ALFP_2437 186bf731665b6ef84051a5d3130ffec0 892 SUPERFAMILY SSF63737 6 196 5.75E-41 T 12-10-2018 ALFP_2437 186bf731665b6ef84051a5d3130ffec0 892 Pfam PF01433 Peptidase family M1 domain 213 455 7.0E-53 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 ALFP_2437 186bf731665b6ef84051a5d3130ffec0 892 Gene3D G3DSA:2.60.40.1730 16 197 4.0E-65 T 12-10-2018 ALFP_2437 186bf731665b6ef84051a5d3130ffec0 892 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 179 194 5.3E-8 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 ALFP_2437 186bf731665b6ef84051a5d3130ffec0 892 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 261 271 5.3E-8 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 ALFP_2437 186bf731665b6ef84051a5d3130ffec0 892 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 297 312 5.3E-8 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 ALFP_2437 186bf731665b6ef84051a5d3130ffec0 892 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 316 328 5.3E-8 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 ALFP_2437 186bf731665b6ef84051a5d3130ffec0 892 Gene3D G3DSA:1.10.1740.60 198 282 1.9E-32 T 12-10-2018 ALFP_2437 186bf731665b6ef84051a5d3130ffec0 892 Gene3D G3DSA:1.25.50.10 570 891 5.1E-108 T 12-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily ALFP_0698 278663bf4dd3742919413cfadb4fea92 74 SUPERFAMILY SSF47090 15 71 2.2E-15 T 12-10-2018 IPR036365 PGBD-like superfamily ALFP_0698 278663bf4dd3742919413cfadb4fea92 74 Gene3D G3DSA:1.10.101.10 4 71 2.4E-12 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 ALFP_0698 278663bf4dd3742919413cfadb4fea92 74 Pfam PF01471 Putative peptidoglycan binding domain 15 68 3.5E-12 T 12-10-2018 IPR002477 Peptidoglycan binding-like ALFP_0059 6d7965648eff9958e17aa8a6987eeb36 506 Gene3D G3DSA:1.20.1250.20 106 494 2.2E-35 T 12-10-2018 ALFP_0059 6d7965648eff9958e17aa8a6987eeb36 506 SUPERFAMILY SSF103473 95 494 1.22E-43 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_0059 6d7965648eff9958e17aa8a6987eeb36 506 Gene3D G3DSA:3.30.70.100 17 96 7.0E-8 T 12-10-2018 ALFP_0059 6d7965648eff9958e17aa8a6987eeb36 506 Pfam PF03992 Antibiotic biosynthesis monooxygenase 17 78 2.2E-5 T 12-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain ALFP_0059 6d7965648eff9958e17aa8a6987eeb36 506 Pfam PF07690 Major Facilitator Superfamily 117 458 1.2E-26 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_0059 6d7965648eff9958e17aa8a6987eeb36 506 SUPERFAMILY SSF54909 25 81 1.28E-7 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel ALFP_0287 e3ce6bac11b44299da7048ddbd6485be 465 Gene3D G3DSA:2.130.10.10 143 464 3.0E-76 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 ALFP_0287 e3ce6bac11b44299da7048ddbd6485be 465 SUPERFAMILY SSF50956 90 239 3.14E-6 T 12-10-2018 ALFP_0287 e3ce6bac11b44299da7048ddbd6485be 465 SUPERFAMILY SSF51004 211 460 3.53E-30 T 12-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily ALFP_0287 e3ce6bac11b44299da7048ddbd6485be 465 Pfam PF10282 Lactonase, 7-bladed beta-propeller 159 414 1.3E-5 T 12-10-2018 IPR019405 Lactonase, 7-bladed beta propeller ALFP_0628 b4dd95bac1cd8c67c9ec11ec00f79681 265 SUPERFAMILY SSF51182 19 182 4.89E-12 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_0628 b4dd95bac1cd8c67c9ec11ec00f79681 265 Gene3D G3DSA:1.10.10.60 159 262 7.4E-21 T 12-10-2018 ALFP_0628 b4dd95bac1cd8c67c9ec11ec00f79681 265 SMART SM00342 174 256 1.9E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0628 b4dd95bac1cd8c67c9ec11ec00f79681 265 Gene3D G3DSA:2.60.120.10 13 90 3.1E-7 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_0628 b4dd95bac1cd8c67c9ec11ec00f79681 265 SUPERFAMILY SSF46689 221 257 1.3E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0628 b4dd95bac1cd8c67c9ec11ec00f79681 265 Pfam PF02311 AraC-like ligand binding domain 28 118 4.8E-6 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 ALFP_0628 b4dd95bac1cd8c67c9ec11ec00f79681 265 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 240 256 6.2E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_0628 b4dd95bac1cd8c67c9ec11ec00f79681 265 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 225 240 6.2E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_0628 b4dd95bac1cd8c67c9ec11ec00f79681 265 Pfam PF12833 Helix-turn-helix domain 181 257 6.8E-19 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_3664 cc6c15718113db389859f7878a624142 206 Gene3D G3DSA:3.40.1370.10 2 206 3.1E-65 T 12-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 ALFP_3664 cc6c15718113db389859f7878a624142 206 SUPERFAMILY SSF52166 1 206 4.19E-70 T 12-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 ALFP_3664 cc6c15718113db389859f7878a624142 206 Pfam PF00573 Ribosomal protein L4/L1 family 19 203 3.1E-60 T 12-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 ALFP_3664 cc6c15718113db389859f7878a624142 206 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 17 203 6.3E-69 T 12-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3664 cc6c15718113db389859f7878a624142 206 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 206 31.185 T 12-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 81 350 2.0E-33 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 386 614 1.7E-46 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 Pfam PF00122 E1-E2 ATPase 116 299 4.4E-35 T 12-10-2018 ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 320 334 4.0E-24 T 12-10-2018 ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 552 564 4.0E-24 T 12-10-2018 ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 163 177 4.0E-24 T 12-10-2018 ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 529 548 4.0E-24 T 12-10-2018 ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 476 486 4.0E-24 T 12-10-2018 ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 Gene3D G3DSA:3.40.50.1000 505 573 8.6E-25 T 12-10-2018 IPR023214 HAD superfamily ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 Gene3D G3DSA:3.40.1110.10 331 459 4.9E-49 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 Gene3D G3DSA:1.20.1110.10 574 620 8.6E-25 T 12-10-2018 ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 SUPERFAMILY SSF56784 308 572 1.19E-38 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 27 690 0.0 T 12-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 SUPERFAMILY SSF81665 39 314 9.81E-15 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 Gene3D G3DSA:2.70.150.20 114 221 6.0E-27 T 12-10-2018 ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 Gene3D G3DSA:3.40.50.1000 460 504 2.4E-5 T 12-10-2018 IPR023214 HAD superfamily ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 SUPERFAMILY SSF81653 122 216 7.59E-22 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 Pfam PF00702 haloacid dehalogenase-like hydrolase 316 543 9.7E-35 T 12-10-2018 ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 322 328 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 ALFP_1395 8d12deb72282d5bac868ca39903ebf26 694 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 17 693 40.175 T 12-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 Gene3D G3DSA:3.40.50.880 1031 1353 5.9E-122 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 SUPERFAMILY SSF52317 1085 1352 1.15E-84 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 SUPERFAMILY SSF55326 647 841 9.16E-63 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 SUPERFAMILY SSF56042 850 1082 1.5E-46 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 Gene3D G3DSA:3.90.650.10 433 636 3.4E-57 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 Gene3D G3DSA:3.30.1330.10 648 834 1.0E-21 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 Pfam PF02769 AIR synthase related protein, C-terminal domain 445 602 1.9E-24 T 12-10-2018 IPR010918 PurM-like, C-terminal domain ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 Pfam PF02769 AIR synthase related protein, C-terminal domain 864 1013 1.7E-13 T 12-10-2018 IPR010918 PurM-like, C-terminal domain ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 SMART SM01211 1089 1352 1.7E-133 T 12-10-2018 ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 4 1353 20.472 T 12-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 SUPERFAMILY SSF55326 233 441 2.09E-56 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 Gene3D G3DSA:1.10.8.750 166 225 5.3E-27 T 12-10-2018 ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 SUPERFAMILY SSF109736 168 232 1.83E-21 T 12-10-2018 ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 Gene3D G3DSA:3.90.650.10 835 1030 2.6E-28 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 Gene3D G3DSA:3.30.1330.10 226 432 7.9E-40 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 8 1352 0.0 T 12-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 SUPERFAMILY SSF56042 445 680 5.38E-46 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 SUPERFAMILY SSF82697 4 161 1.57E-38 T 12-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 ALFP_1506 fe0688a119a53bb1de8ff0530ed1ddae 1353 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1089 1352 1.3E-97 T 12-10-2018 ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 8.4E-64 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 SUPERFAMILY SSF52540 6 288 1.87E-103 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 SUPERFAMILY SSF54980 609 696 6.23E-28 T 12-10-2018 IPR035647 EF-G domain III/V-like ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 186 1.6E-29 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 Pfam PF03764 Elongation factor G, domain IV 484 603 2.8E-48 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 Gene3D G3DSA:3.40.50.300 1 298 3.1E-111 T 12-10-2018 ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 Gene3D G3DSA:3.30.70.870 438 488 1.0E-25 T 12-10-2018 ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 SUPERFAMILY SSF50447 271 409 2.65E-35 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 Pfam PF03144 Elongation factor Tu domain 2 329 396 1.7E-16 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 Gene3D G3DSA:3.30.70.240 610 681 2.2E-89 T 12-10-2018 ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 SMART SM00838 606 694 5.6E-54 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 PRINTS PR00315 GTP-binding elongation factor signature 137 146 3.7E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 PRINTS PR00315 GTP-binding elongation factor signature 58 66 3.7E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 PRINTS PR00315 GTP-binding elongation factor signature 85 95 3.7E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 PRINTS PR00315 GTP-binding elongation factor signature 12 25 3.7E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 PRINTS PR00315 GTP-binding elongation factor signature 101 112 3.7E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 Gene3D G3DSA:3.30.230.10 489 694 2.2E-89 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 Gene3D G3DSA:2.40.30.10 299 421 1.5E-50 T 12-10-2018 ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 Pfam PF00679 Elongation factor G C-terminus 606 693 1.9E-30 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 Pfam PF14492 Elongation Factor G, domain II 409 483 3.1E-34 T 12-10-2018 ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 SUPERFAMILY SSF54980 407 485 4.32E-25 T 12-10-2018 IPR035647 EF-G domain III/V-like ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 SUPERFAMILY SSF54211 484 605 1.24E-44 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 698 0.0 T 12-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 Hamap MF_00054_B Elongation factor G [fusA]. 6 698 110.813 T 12-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 ALFP_3671 d976ff2b59a1ecf96d97288b74bd69ae 700 SMART SM00889 485 604 2.6E-73 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 272 418 7.0E-22 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 621 739 3.6E-28 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 36 909 0.0 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 SUPERFAMILY SSF56784 377 749 8.24E-37 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 SMART SM00831 33 106 4.3E-19 T 12-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 Pfam PF00122 E1-E2 ATPase 160 359 3.1E-44 T 12-10-2018 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 Pfam PF00690 Cation transporter/ATPase, N-terminus 37 101 9.6E-15 T 12-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 Gene3D G3DSA:3.40.50.1000 601 684 1.1E-21 T 12-10-2018 IPR023214 HAD superfamily ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 Gene3D G3DSA:2.70.150.10 132 260 2.7E-32 T 12-10-2018 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 Gene3D G3DSA:1.20.1110.10 261 391 6.9E-21 T 12-10-2018 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 Pfam PF00689 Cation transporting ATPase, C-terminus 733 901 4.9E-17 T 12-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 381 387 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 SUPERFAMILY SSF81665 37 907 1.14E-99 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 PRINTS PR01836 Magnesium-transporting ATPase signature 708 723 6.3E-86 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 PRINTS PR01836 Magnesium-transporting ATPase signature 758 771 6.3E-86 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 PRINTS PR01836 Magnesium-transporting ATPase signature 813 834 6.3E-86 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 PRINTS PR01836 Magnesium-transporting ATPase signature 863 884 6.3E-86 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 PRINTS PR01836 Magnesium-transporting ATPase signature 726 737 6.3E-86 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 PRINTS PR01836 Magnesium-transporting ATPase signature 292 308 6.3E-86 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 PRINTS PR01836 Magnesium-transporting ATPase signature 413 426 6.3E-86 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 PRINTS PR01836 Magnesium-transporting ATPase signature 309 328 6.3E-86 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 PRINTS PR01836 Magnesium-transporting ATPase signature 778 794 6.3E-86 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 Gene3D G3DSA:1.20.1110.10 685 813 3.6E-9 T 12-10-2018 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 SUPERFAMILY SSF81653 165 279 5.49E-27 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 Gene3D G3DSA:3.40.1110.10 392 561 9.3E-51 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 ALFP_3081 85cb7eec1002011b1f7da7a543fae861 910 Pfam PF00702 haloacid dehalogenase-like hydrolase 375 664 2.2E-18 T 12-10-2018 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 Gene3D G3DSA:3.30.2090.10 184 274 3.2E-283 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 Gene3D G3DSA:3.30.70.1430 46 800 3.2E-283 T 12-10-2018 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 SUPERFAMILY SSF82714 189 270 1.57E-16 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 SUPERFAMILY SSF82693 47 140 2.09E-23 T 12-10-2018 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 Pfam PF00873 AcrB/AcrD/AcrF family 10 1009 9.8E-271 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 PRINTS PR00702 Acriflavin resistance protein family signature 16 40 8.7E-72 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 PRINTS PR00702 Acriflavin resistance protein family signature 44 62 8.7E-72 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 PRINTS PR00702 Acriflavin resistance protein family signature 335 358 8.7E-72 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 PRINTS PR00702 Acriflavin resistance protein family signature 443 466 8.7E-72 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 PRINTS PR00702 Acriflavin resistance protein family signature 609 623 8.7E-72 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 PRINTS PR00702 Acriflavin resistance protein family signature 390 414 8.7E-72 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 PRINTS PR00702 Acriflavin resistance protein family signature 546 563 8.7E-72 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 PRINTS PR00702 Acriflavin resistance protein family signature 362 383 8.7E-72 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 PRINTS PR00702 Acriflavin resistance protein family signature 468 491 8.7E-72 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 Gene3D G3DSA:3.30.70.1440 654 848 3.2E-283 T 12-10-2018 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 Gene3D G3DSA:3.30.70.1430 561 653 3.2E-283 T 12-10-2018 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 SUPERFAMILY SSF82866 790 1011 2.09E-44 T 12-10-2018 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 Gene3D G3DSA:3.30.70.1320 140 331 3.2E-283 T 12-10-2018 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 Gene3D G3DSA:1.20.1640.10 16 506 3.2E-283 T 12-10-2018 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 SUPERFAMILY SSF82866 296 495 1.31E-47 T 12-10-2018 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 SUPERFAMILY SSF82693 559 656 4.81E-16 T 12-10-2018 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 SUPERFAMILY SSF82714 705 789 1.29E-16 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 Gene3D G3DSA:1.20.1640.10 507 1006 3.2E-283 T 12-10-2018 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 SUPERFAMILY SSF82693 143 327 2.44E-18 T 12-10-2018 ALFP_2741 8689fa8f0c4e27726d87c7c470829839 1038 Gene3D G3DSA:3.30.2090.10 704 792 3.2E-283 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_2750 122ee0c3a194854ec8fdecfee9fdbe37 196 SUPERFAMILY SSF46626 70 176 1.07E-26 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2750 122ee0c3a194854ec8fdecfee9fdbe37 196 Gene3D G3DSA:1.10.760.10 60 182 1.3E-45 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2750 122ee0c3a194854ec8fdecfee9fdbe37 196 PRINTS PR00605 Class IC cytochrome C signature 131 153 3.2E-5 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 ALFP_2750 122ee0c3a194854ec8fdecfee9fdbe37 196 PRINTS PR00605 Class IC cytochrome C signature 78 89 3.2E-5 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 ALFP_2750 122ee0c3a194854ec8fdecfee9fdbe37 196 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 69 153 2.4E-13 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_0045 a5ebc12e4dbc176338ae6452c794e859 276 Gene3D G3DSA:3.90.226.10 3 259 9.8E-57 T 12-10-2018 ALFP_0045 a5ebc12e4dbc176338ae6452c794e859 276 SUPERFAMILY SSF52096 9 265 5.69E-57 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_0045 a5ebc12e4dbc176338ae6452c794e859 276 Pfam PF00378 Enoyl-CoA hydratase/isomerase 18 238 1.2E-35 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 ALFP_3101 0e8fa4cf8c596216e9bd2e4135e873aa 313 Pfam PF00294 pfkB family carbohydrate kinase 41 291 3.1E-40 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB ALFP_3101 0e8fa4cf8c596216e9bd2e4135e873aa 313 Gene3D G3DSA:3.40.1190.20 3 313 6.1E-99 T 12-10-2018 IPR029056 Ribokinase-like ALFP_3101 0e8fa4cf8c596216e9bd2e4135e873aa 313 SUPERFAMILY SSF53613 2 294 3.27E-63 T 12-10-2018 IPR029056 Ribokinase-like ALFP_3101 0e8fa4cf8c596216e9bd2e4135e873aa 313 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 49 73 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 ALFP_3255 c50ed8d65e0f58a5dce06e72a9581285 66 Gene3D G3DSA:3.40.30.10 1 65 6.2E-16 T 12-10-2018 ALFP_3255 c50ed8d65e0f58a5dce06e72a9581285 66 Pfam PF00462 Glutaredoxin 2 45 5.4E-9 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 ALFP_3255 c50ed8d65e0f58a5dce06e72a9581285 66 SUPERFAMILY SSF52833 2 65 9.23E-16 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_3255 c50ed8d65e0f58a5dce06e72a9581285 66 PRINTS PR00160 Glutaredoxin signature 28 41 1.7E-8 T 12-10-2018 IPR014025 Glutaredoxin subgroup ALFP_3255 c50ed8d65e0f58a5dce06e72a9581285 66 PRINTS PR00160 Glutaredoxin signature 42 55 1.7E-8 T 12-10-2018 IPR014025 Glutaredoxin subgroup ALFP_1600 08fdbdf8ab088b8fb018d8d91313d76b 156 Gene3D G3DSA:1.10.10.10 1 142 5.8E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1600 08fdbdf8ab088b8fb018d8d91313d76b 156 SUPERFAMILY SSF46785 8 139 4.44E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1600 08fdbdf8ab088b8fb018d8d91313d76b 156 Pfam PF12802 MarR family 33 90 1.0E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1600 08fdbdf8ab088b8fb018d8d91313d76b 156 SMART SM00347 27 127 5.5E-14 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_3714 64fe59e614d4f74e24182e51224b1dd7 334 Gene3D G3DSA:3.30.1780.10 10 329 1.1E-87 T 12-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 ALFP_3714 64fe59e614d4f74e24182e51224b1dd7 334 PIRSF PIRSF001439 1 334 3.0E-80 T 12-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 ALFP_3714 64fe59e614d4f74e24182e51224b1dd7 334 Gene3D G3DSA:3.40.50.720 133 307 1.1E-87 T 12-10-2018 ALFP_3714 64fe59e614d4f74e24182e51224b1dd7 334 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 7 319 3.7E-70 T 12-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 ALFP_3714 64fe59e614d4f74e24182e51224b1dd7 334 SUPERFAMILY SSF51735 7 334 7.89E-83 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1224 49f4e576f8b8dda041e088a1777ca44b 448 PRINTS PR01007 Flagellar hook-length control protein signature 279 301 3.9E-8 T 12-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 ALFP_1224 49f4e576f8b8dda041e088a1777ca44b 448 PRINTS PR01007 Flagellar hook-length control protein signature 348 363 3.9E-8 T 12-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 ALFP_1224 49f4e576f8b8dda041e088a1777ca44b 448 PRINTS PR01007 Flagellar hook-length control protein signature 363 386 3.9E-8 T 12-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 ALFP_1224 49f4e576f8b8dda041e088a1777ca44b 448 Pfam PF02120 Flagellar hook-length control protein FliK 317 397 1.3E-21 T 12-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal ALFP_1224 49f4e576f8b8dda041e088a1777ca44b 448 Gene3D G3DSA:3.30.750.140 292 408 2.5E-31 T 12-10-2018 IPR038610 FliK-like, C-terminal domain superfamily ALFP_1436 b9a01fe61f83bbc6f3164aa085bd5720 946 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 1 937 20.68 T 12-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 ALFP_1436 b9a01fe61f83bbc6f3164aa085bd5720 946 SUPERFAMILY SSF47323 672 936 2.99E-68 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_1436 b9a01fe61f83bbc6f3164aa085bd5720 946 SUPERFAMILY SSF52374 1 669 9.73E-135 T 12-10-2018 ALFP_1436 b9a01fe61f83bbc6f3164aa085bd5720 946 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 27 660 6.2E-194 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_1436 b9a01fe61f83bbc6f3164aa085bd5720 946 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 50 61 1.5E-31 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 ALFP_1436 b9a01fe61f83bbc6f3164aa085bd5720 946 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 408 423 1.5E-31 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 ALFP_1436 b9a01fe61f83bbc6f3164aa085bd5720 946 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 538 551 1.5E-31 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 ALFP_1436 b9a01fe61f83bbc6f3164aa085bd5720 946 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 581 590 1.5E-31 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 ALFP_1436 b9a01fe61f83bbc6f3164aa085bd5720 946 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 233 256 1.5E-31 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 ALFP_1436 b9a01fe61f83bbc6f3164aa085bd5720 946 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 14 862 4.2E-265 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 ALFP_1436 b9a01fe61f83bbc6f3164aa085bd5720 946 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 57 68 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_1436 b9a01fe61f83bbc6f3164aa085bd5720 946 Pfam PF06827 Zinc finger found in FPG and IleRS 908 934 3.4E-8 T 12-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 ALFP_1436 b9a01fe61f83bbc6f3164aa085bd5720 946 Gene3D G3DSA:3.40.50.620 24 649 2.1E-220 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_1436 b9a01fe61f83bbc6f3164aa085bd5720 946 SUPERFAMILY SSF50677 200 410 2.51E-47 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 ALFP_1436 b9a01fe61f83bbc6f3164aa085bd5720 946 Gene3D G3DSA:3.90.740.10 191 415 2.1E-220 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 ALFP_1436 b9a01fe61f83bbc6f3164aa085bd5720 946 Gene3D G3DSA:1.10.730.20 660 937 2.0E-86 T 12-10-2018 ALFP_1436 b9a01fe61f83bbc6f3164aa085bd5720 946 Pfam PF08264 Anticodon-binding domain of tRNA 705 860 8.1E-24 T 12-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 ALFP_0337 7af4880f90ac41498c61eeaea772e4b1 337 Gene3D G3DSA:3.40.190.10 111 215 3.2E-61 T 12-10-2018 ALFP_0337 7af4880f90ac41498c61eeaea772e4b1 337 Gene3D G3DSA:3.40.190.10 33 327 3.2E-61 T 12-10-2018 ALFP_0337 7af4880f90ac41498c61eeaea772e4b1 337 SUPERFAMILY SSF53850 37 261 1.23E-40 T 12-10-2018 ALFP_0337 7af4880f90ac41498c61eeaea772e4b1 337 Pfam PF09084 NMT1/THI5 like 40 255 7.3E-42 T 12-10-2018 IPR015168 SsuA/THI5-like ALFP_1274 a5be75745e28d24f273c3f03dbbecaab 298 SUPERFAMILY SSF46785 8 88 3.0E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1274 a5be75745e28d24f273c3f03dbbecaab 298 Gene3D G3DSA:3.40.190.10 104 282 3.6E-39 T 12-10-2018 ALFP_1274 a5be75745e28d24f273c3f03dbbecaab 298 Pfam PF03466 LysR substrate binding domain 96 286 7.3E-26 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1274 a5be75745e28d24f273c3f03dbbecaab 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 1.2E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1274 a5be75745e28d24f273c3f03dbbecaab 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 1.2E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1274 a5be75745e28d24f273c3f03dbbecaab 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 1.2E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1274 a5be75745e28d24f273c3f03dbbecaab 298 Gene3D G3DSA:1.10.10.10 10 96 5.0E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1274 a5be75745e28d24f273c3f03dbbecaab 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 3.5E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1274 a5be75745e28d24f273c3f03dbbecaab 298 SUPERFAMILY SSF53850 96 287 6.15E-29 T 12-10-2018 ALFP_1274 a5be75745e28d24f273c3f03dbbecaab 298 Gene3D G3DSA:3.40.190.10 165 257 3.6E-39 T 12-10-2018 ALFP_2705 5d4cdec88b318740097618bbf1e4abaa 315 SUPERFAMILY SSF55347 132 285 5.23E-64 T 12-10-2018 ALFP_2705 5d4cdec88b318740097618bbf1e4abaa 315 Gene3D G3DSA:3.40.50.720 8 306 1.7E-126 T 12-10-2018 ALFP_2705 5d4cdec88b318740097618bbf1e4abaa 315 SUPERFAMILY SSF51735 7 156 1.54E-27 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2705 5d4cdec88b318740097618bbf1e4abaa 315 TIGRFAM TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating) 7 309 7.4E-140 T 12-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 ALFP_2705 5d4cdec88b318740097618bbf1e4abaa 315 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 9 120 3.9E-12 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 ALFP_2705 5d4cdec88b318740097618bbf1e4abaa 315 PIRSF PIRSF015689 4 315 7.5E-130 T 12-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 ALFP_2705 5d4cdec88b318740097618bbf1e4abaa 315 Hamap MF_01657 Acetaldehyde dehydrogenase [mhpF]. 1 315 142.509 T 12-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 ALFP_2705 5d4cdec88b318740097618bbf1e4abaa 315 Gene3D G3DSA:3.30.360.10 132 299 1.7E-126 T 12-10-2018 ALFP_2705 5d4cdec88b318740097618bbf1e4abaa 315 Pfam PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation 132 285 1.4E-60 T 12-10-2018 IPR015426 Acetaldehyde dehydrogenase, C-terminal GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 ALFP_2705 5d4cdec88b318740097618bbf1e4abaa 315 SMART SM00859 8 124 1.1E-11 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 ALFP_3109 4eeef15163e55b15de26c4cef7eb72f4 195 Pfam PF05728 Uncharacterised protein family (UPF0227) 1 191 4.8E-45 T 12-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA ALFP_3109 4eeef15163e55b15de26c4cef7eb72f4 195 SUPERFAMILY SSF53474 2 190 1.7E-17 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_3109 4eeef15163e55b15de26c4cef7eb72f4 195 Gene3D G3DSA:3.40.50.1820 1 194 7.0E-50 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2113 cee9cdb635773893dc1ef4be8062bc48 529 ProSitePatterns PS00455 Putative AMP-binding domain signature. 173 184 - T 12-10-2018 IPR020845 AMP-binding, conserved site ALFP_2113 cee9cdb635773893dc1ef4be8062bc48 529 SUPERFAMILY SSF56801 3 525 8.9E-132 T 12-10-2018 ALFP_2113 cee9cdb635773893dc1ef4be8062bc48 529 Pfam PF13193 AMP-binding enzyme C-terminal domain 437 512 7.4E-15 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain ALFP_2113 cee9cdb635773893dc1ef4be8062bc48 529 Gene3D G3DSA:3.30.300.310 424 527 4.6E-28 T 12-10-2018 ALFP_2113 cee9cdb635773893dc1ef4be8062bc48 529 Pfam PF00501 AMP-binding enzyme 14 428 2.4E-86 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_2113 cee9cdb635773893dc1ef4be8062bc48 529 Gene3D G3DSA:3.40.50.12780 1 423 4.6E-116 T 12-10-2018 ALFP_0952 f98a595cc78043e7fb5cecd9ba9492e5 535 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 259 278 3.2E-29 T 12-10-2018 ALFP_0952 f98a595cc78043e7fb5cecd9ba9492e5 535 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 114 132 3.2E-29 T 12-10-2018 ALFP_0952 f98a595cc78043e7fb5cecd9ba9492e5 535 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 47 72 3.2E-29 T 12-10-2018 ALFP_0952 f98a595cc78043e7fb5cecd9ba9492e5 535 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 408 423 3.2E-29 T 12-10-2018 ALFP_0952 f98a595cc78043e7fb5cecd9ba9492e5 535 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 377 395 3.2E-29 T 12-10-2018 ALFP_0952 f98a595cc78043e7fb5cecd9ba9492e5 535 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 353 371 3.2E-29 T 12-10-2018 ALFP_0952 f98a595cc78043e7fb5cecd9ba9492e5 535 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 132 151 3.2E-29 T 12-10-2018 ALFP_0952 f98a595cc78043e7fb5cecd9ba9492e5 535 Pfam PF01019 Gamma-glutamyltranspeptidase 40 530 3.8E-141 T 12-10-2018 ALFP_0952 f98a595cc78043e7fb5cecd9ba9492e5 535 Gene3D G3DSA:3.60.20.40 358 535 3.7E-62 T 12-10-2018 ALFP_0952 f98a595cc78043e7fb5cecd9ba9492e5 535 SUPERFAMILY SSF56235 12 535 1.16E-161 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal ALFP_0952 f98a595cc78043e7fb5cecd9ba9492e5 535 Gene3D G3DSA:1.10.246.130 247 357 1.1E-20 T 12-10-2018 ALFP_0285 3e9a372127163218bed4cf3706ff8aa9 212 SUPERFAMILY SSF52499 11 210 1.83E-56 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_0285 3e9a372127163218bed4cf3706ff8aa9 212 PIRSF PIRSF001111 1 212 5.5E-93 T 12-10-2018 IPR016291 Isochorismatase GO:0008908 ALFP_0285 3e9a372127163218bed4cf3706ff8aa9 212 Pfam PF00857 Isochorismatase family 30 202 1.9E-36 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 ALFP_0285 3e9a372127163218bed4cf3706ff8aa9 212 Gene3D G3DSA:3.40.50.850 1 209 8.4E-72 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_0285 3e9a372127163218bed4cf3706ff8aa9 212 PRINTS PR01398 Isochorismatase signature 112 134 1.6E-30 T 12-10-2018 IPR016291 Isochorismatase GO:0008908 ALFP_0285 3e9a372127163218bed4cf3706ff8aa9 212 PRINTS PR01398 Isochorismatase signature 186 203 1.6E-30 T 12-10-2018 IPR016291 Isochorismatase GO:0008908 ALFP_0285 3e9a372127163218bed4cf3706ff8aa9 212 PRINTS PR01398 Isochorismatase signature 2 14 1.6E-30 T 12-10-2018 IPR016291 Isochorismatase GO:0008908 ALFP_0285 3e9a372127163218bed4cf3706ff8aa9 212 PRINTS PR01398 Isochorismatase signature 61 78 1.6E-30 T 12-10-2018 IPR016291 Isochorismatase GO:0008908 ALFP_0285 3e9a372127163218bed4cf3706ff8aa9 212 PRINTS PR01398 Isochorismatase signature 168 186 1.6E-30 T 12-10-2018 IPR016291 Isochorismatase GO:0008908 ALFP_2578 66971102ae1e70528b7446eef0b1e24b 499 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 332 351 8.0E-48 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2578 66971102ae1e70528b7446eef0b1e24b 499 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 384 410 8.0E-48 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2578 66971102ae1e70528b7446eef0b1e24b 499 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 144 163 8.0E-48 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2578 66971102ae1e70528b7446eef0b1e24b 499 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 244 268 8.0E-48 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2578 66971102ae1e70528b7446eef0b1e24b 499 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 174 198 8.0E-48 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2578 66971102ae1e70528b7446eef0b1e24b 499 Pfam PF00361 Proton-conducting membrane transporter 140 424 7.1E-79 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2578 66971102ae1e70528b7446eef0b1e24b 499 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 13 494 6.3E-185 T 12-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2578 66971102ae1e70528b7446eef0b1e24b 499 Pfam PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus 79 131 5.6E-5 T 12-10-2018 IPR000260 NADH:ubiquinone oxidoreductase chain 4, N-terminal GO:0006120|GO:0055114 KEGG: 00190+1.6.5.3|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-5083|MetaCyc: PWY-6692|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_0132 d6801ec93324297de3367416410e447d 863 Pfam PF01131 DNA topoisomerase 154 598 5.5E-114 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 ALFP_0132 d6801ec93324297de3367416410e447d 863 SMART SM00436 125 220 3.5E-20 T 12-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 ALFP_0132 d6801ec93324297de3367416410e447d 863 Gene3D G3DSA:3.40.50.140 3 152 2.9E-42 T 12-10-2018 ALFP_0132 d6801ec93324297de3367416410e447d 863 SMART SM00437 278 560 2.3E-75 T 12-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 ALFP_0132 d6801ec93324297de3367416410e447d 863 Pfam PF01751 Toprim domain 4 130 6.3E-11 T 12-10-2018 IPR006171 TOPRIM domain ALFP_0132 d6801ec93324297de3367416410e447d 863 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 523 537 6.1E-25 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 ALFP_0132 d6801ec93324297de3367416410e447d 863 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 99 112 6.1E-25 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 ALFP_0132 d6801ec93324297de3367416410e447d 863 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 190 208 6.1E-25 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 ALFP_0132 d6801ec93324297de3367416410e447d 863 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 321 330 6.1E-25 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 ALFP_0132 d6801ec93324297de3367416410e447d 863 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 408 424 6.1E-25 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 ALFP_0132 d6801ec93324297de3367416410e447d 863 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 315 330 - T 12-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 ALFP_0132 d6801ec93324297de3367416410e447d 863 Gene3D G3DSA:1.10.460.10 159 608 8.1E-159 T 12-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 ALFP_0132 d6801ec93324297de3367416410e447d 863 Gene3D G3DSA:1.10.290.10 287 422 8.1E-159 T 12-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 ALFP_0132 d6801ec93324297de3367416410e447d 863 SUPERFAMILY SSF56712 3 613 5.36E-168 T 12-10-2018 IPR023405 DNA topoisomerase, type IA, core domain ALFP_0132 d6801ec93324297de3367416410e447d 863 Pfam PF13342 C-terminal repeat of topoisomerase 754 814 2.9E-18 T 12-10-2018 IPR025589 Topoisomerase C-terminal repeat ALFP_0132 d6801ec93324297de3367416410e447d 863 Pfam PF13342 C-terminal repeat of topoisomerase 650 708 1.1E-19 T 12-10-2018 IPR025589 Topoisomerase C-terminal repeat ALFP_0132 d6801ec93324297de3367416410e447d 863 TIGRFAM TIGR01056 topB: DNA topoisomerase III 3 618 2.3E-165 T 12-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 ALFP_0132 d6801ec93324297de3367416410e447d 863 SMART SM00493 3 125 3.3E-13 T 12-10-2018 IPR006171 TOPRIM domain ALFP_0132 d6801ec93324297de3367416410e447d 863 Gene3D G3DSA:2.70.20.10 214 491 8.1E-159 T 12-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 ALFP_2577 32b95711548792168830aafeb7aef23b 492 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 9 476 1.6E-137 T 12-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 ALFP_2577 32b95711548792168830aafeb7aef23b 492 Pfam PF00361 Proton-conducting membrane transporter 127 427 1.8E-73 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2577 32b95711548792168830aafeb7aef23b 492 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 5 479 18.054 T 12-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 ALFP_2429 d3db494f50e4348caceacaf3060053e6 130 Pfam PF06339 Ectoine synthase 1 126 2.5E-58 T 12-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 ALFP_2429 d3db494f50e4348caceacaf3060053e6 130 ProDom PD080544 SYNTHASE 4.2.1.- LYASE L-ECTOINE DEHYDRATASE N-ACETYLDIAMINOBUTYRATE ECTOINE ENZYME SYNTHASE:ECTOINE ECTC 1 118 6.0E-57 T 12-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 ALFP_2429 d3db494f50e4348caceacaf3060053e6 130 Gene3D G3DSA:2.60.120.10 1 116 8.1E-46 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_2429 d3db494f50e4348caceacaf3060053e6 130 SUPERFAMILY SSF51182 9 125 1.74E-22 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_2429 d3db494f50e4348caceacaf3060053e6 130 Hamap MF_01255 L-ectoine synthase [ectC]. 1 128 40.806 T 12-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 ALFP_3108 aba40bc4604eb8a9d1a4cb43259d3abf 442 Pfam PF01225 Mur ligase family, catalytic domain 1 89 5.5E-12 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 ALFP_3108 aba40bc4604eb8a9d1a4cb43259d3abf 442 Pfam PF02875 Mur ligase family, glutamate ligase domain 298 373 5.8E-9 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 ALFP_3108 aba40bc4604eb8a9d1a4cb43259d3abf 442 SUPERFAMILY SSF51984 1 78 1.44E-13 T 12-10-2018 ALFP_3108 aba40bc4604eb8a9d1a4cb43259d3abf 442 Gene3D G3DSA:3.40.50.720 1 78 7.5E-26 T 12-10-2018 ALFP_3108 aba40bc4604eb8a9d1a4cb43259d3abf 442 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 441 53.072 T 12-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 ALFP_3108 aba40bc4604eb8a9d1a4cb43259d3abf 442 Gene3D G3DSA:3.90.190.20 297 442 1.7E-27 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 ALFP_3108 aba40bc4604eb8a9d1a4cb43259d3abf 442 Pfam PF08245 Mur ligase middle domain 96 278 2.6E-19 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 ALFP_3108 aba40bc4604eb8a9d1a4cb43259d3abf 442 SUPERFAMILY SSF53623 86 295 5.61E-47 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 ALFP_3108 aba40bc4604eb8a9d1a4cb43259d3abf 442 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 1 440 5.9E-197 T 12-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 ALFP_3108 aba40bc4604eb8a9d1a4cb43259d3abf 442 SUPERFAMILY SSF53244 297 440 4.45E-35 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 ALFP_3108 aba40bc4604eb8a9d1a4cb43259d3abf 442 Gene3D G3DSA:3.40.1190.10 79 296 1.7E-55 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 ALFP_1844 49e4fd45c8ef7c3ab303ea3d964b692d 430 Gene3D G3DSA:3.20.20.30 1 430 4.7E-139 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 ALFP_1844 49e4fd45c8ef7c3ab303ea3d964b692d 430 PIRSF PIRSF000337 1 430 1.3E-145 T 12-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 ALFP_1844 49e4fd45c8ef7c3ab303ea3d964b692d 430 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 6 422 7.0E-153 T 12-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 ALFP_1844 49e4fd45c8ef7c3ab303ea3d964b692d 430 SUPERFAMILY SSF51679 2 428 8.98E-119 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 ALFP_1844 49e4fd45c8ef7c3ab303ea3d964b692d 430 Pfam PF00296 Luciferase-like monooxygenase 17 380 2.2E-56 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ALFP_3023 ab77930ea07da311b8fa32382f105f48 351 Gene3D G3DSA:3.40.190.10 311 347 1.6E-23 T 12-10-2018 ALFP_3023 ab77930ea07da311b8fa32382f105f48 351 Gene3D G3DSA:3.40.190.10 18 133 2.1E-26 T 12-10-2018 ALFP_3023 ab77930ea07da311b8fa32382f105f48 351 SMART SM00079 21 349 2.0E-6 T 12-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 ALFP_3023 ab77930ea07da311b8fa32382f105f48 351 SMART SM00062 21 350 7.8E-14 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_3023 ab77930ea07da311b8fa32382f105f48 351 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 22 348 1.1E-47 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_3023 ab77930ea07da311b8fa32382f105f48 351 SUPERFAMILY SSF53850 20 348 4.4E-47 T 12-10-2018 ALFP_3023 ab77930ea07da311b8fa32382f105f48 351 Gene3D G3DSA:3.40.190.10 225 310 1.6E-23 T 12-10-2018 ALFP_2112 27f0fce8e2df02efdfd43d741aa873e4 350 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 42 215 1.8E-28 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal ALFP_2112 27f0fce8e2df02efdfd43d741aa873e4 350 Gene3D G3DSA:1.10.10.60 243 349 2.7E-23 T 12-10-2018 ALFP_2112 27f0fce8e2df02efdfd43d741aa873e4 350 Pfam PF12833 Helix-turn-helix domain 269 344 5.7E-17 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_2112 27f0fce8e2df02efdfd43d741aa873e4 350 SMART SM00342 261 343 4.0E-23 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_2112 27f0fce8e2df02efdfd43d741aa873e4 350 SUPERFAMILY SSF46689 296 345 6.27E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1512 9004bc8f229645e3b9b4add7ee06f5db 528 SUPERFAMILY SSF52317 1 233 4.59E-56 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_1512 9004bc8f229645e3b9b4add7ee06f5db 528 Pfam PF00117 Glutamine amidotransferase class-I 7 195 9.0E-35 T 12-10-2018 IPR017926 Glutamine amidotransferase ALFP_1512 9004bc8f229645e3b9b4add7ee06f5db 528 SUPERFAMILY SSF52402 193 415 1.52E-57 T 12-10-2018 ALFP_1512 9004bc8f229645e3b9b4add7ee06f5db 528 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 2 528 54.632 T 12-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 ALFP_1512 9004bc8f229645e3b9b4add7ee06f5db 528 SUPERFAMILY SSF54810 401 528 4.58E-46 T 12-10-2018 ALFP_1512 9004bc8f229645e3b9b4add7ee06f5db 528 Gene3D G3DSA:3.30.300.10 402 528 2.6E-50 T 12-10-2018 ALFP_1512 9004bc8f229645e3b9b4add7ee06f5db 528 Gene3D G3DSA:3.40.50.880 4 202 3.8E-52 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_1512 9004bc8f229645e3b9b4add7ee06f5db 528 Pfam PF02540 NAD synthase 214 288 9.9E-7 T 12-10-2018 IPR022310 NAD/GMP synthase ALFP_1512 9004bc8f229645e3b9b4add7ee06f5db 528 Gene3D G3DSA:3.40.50.620 205 401 3.0E-76 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_1512 9004bc8f229645e3b9b4add7ee06f5db 528 Pfam PF00958 GMP synthase C terminal domain 440 527 2.5E-41 T 12-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 ALFP_1512 9004bc8f229645e3b9b4add7ee06f5db 528 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 5 200 4.3E-67 T 12-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 ALFP_1512 9004bc8f229645e3b9b4add7ee06f5db 528 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 209 528 2.9E-146 T 12-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 ALFP_2100 1bb255d23d5f7adc815d62029d78b17e 293 PIRSF PIRSF001553 1 293 3.3E-115 T 12-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 ALFP_2100 1bb255d23d5f7adc815d62029d78b17e 293 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 157 186 - T 12-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site ALFP_2100 1bb255d23d5f7adc815d62029d78b17e 293 SUPERFAMILY SSF52210 128 292 1.83E-51 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 ALFP_2100 1bb255d23d5f7adc815d62029d78b17e 293 PRINTS PR01798 Succinyl-CoA synthase signature 85 102 2.6E-33 T 12-10-2018 ALFP_2100 1bb255d23d5f7adc815d62029d78b17e 293 PRINTS PR01798 Succinyl-CoA synthase signature 182 200 2.6E-33 T 12-10-2018 ALFP_2100 1bb255d23d5f7adc815d62029d78b17e 293 PRINTS PR01798 Succinyl-CoA synthase signature 245 262 2.6E-33 T 12-10-2018 ALFP_2100 1bb255d23d5f7adc815d62029d78b17e 293 PRINTS PR01798 Succinyl-CoA synthase signature 213 226 2.6E-33 T 12-10-2018 ALFP_2100 1bb255d23d5f7adc815d62029d78b17e 293 Gene3D G3DSA:3.40.50.261 129 293 2.1E-66 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 ALFP_2100 1bb255d23d5f7adc815d62029d78b17e 293 SMART SM00881 4 103 3.3E-29 T 12-10-2018 IPR003781 CoA-binding GO:0048037 ALFP_2100 1bb255d23d5f7adc815d62029d78b17e 293 Gene3D G3DSA:3.40.50.720 1 128 2.5E-42 T 12-10-2018 ALFP_2100 1bb255d23d5f7adc815d62029d78b17e 293 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 293 1.2E-126 T 12-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 ALFP_2100 1bb255d23d5f7adc815d62029d78b17e 293 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 293 40.248 T 12-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 ALFP_2100 1bb255d23d5f7adc815d62029d78b17e 293 Pfam PF02629 CoA binding domain 6 102 3.4E-23 T 12-10-2018 IPR003781 CoA-binding GO:0048037 ALFP_2100 1bb255d23d5f7adc815d62029d78b17e 293 Pfam PF00549 CoA-ligase 156 271 5.3E-15 T 12-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 ALFP_2100 1bb255d23d5f7adc815d62029d78b17e 293 SUPERFAMILY SSF51735 1 127 5.75E-36 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2100 1bb255d23d5f7adc815d62029d78b17e 293 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 241 254 - T 12-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site ALFP_3627 53ccd1a74d7a679093babd8aa0f384b9 179 Gene3D G3DSA:3.30.1440.10 1 179 9.7E-78 T 12-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3627 53ccd1a74d7a679093babd8aa0f384b9 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 43.887 T 12-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3627 53ccd1a74d7a679093babd8aa0f384b9 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 12-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3627 53ccd1a74d7a679093babd8aa0f384b9 179 Pfam PF00281 Ribosomal protein L5 25 80 9.0E-26 T 12-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3627 53ccd1a74d7a679093babd8aa0f384b9 179 PIRSF PIRSF002161 1 179 7.2E-64 T 12-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3627 53ccd1a74d7a679093babd8aa0f384b9 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 8.7E-41 T 12-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3627 53ccd1a74d7a679093babd8aa0f384b9 179 SUPERFAMILY SSF55282 3 179 1.15E-76 T 12-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 Gene3D G3DSA:3.10.20.590 826 885 2.6E-17 T 12-10-2018 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 884 0.0 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 Gene3D G3DSA:3.90.740.10 234 432 0.0 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 228 421 2.7E-64 T 12-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 SUPERFAMILY SSF47323 683 884 3.36E-32 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 Gene3D G3DSA:3.10.330.110 586 648 0.0 T 12-10-2018 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 48 59 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 Gene3D G3DSA:3.40.50.620 39 585 0.0 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 SUPERFAMILY SSF50677 234 433 1.15E-48 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 PRINTS PR00985 Leucyl-tRNA synthetase signature 191 204 1.3E-48 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 PRINTS PR00985 Leucyl-tRNA synthetase signature 222 241 1.3E-48 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 PRINTS PR00985 Leucyl-tRNA synthetase signature 576 586 1.3E-48 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 PRINTS PR00985 Leucyl-tRNA synthetase signature 543 565 1.3E-48 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 PRINTS PR00985 Leucyl-tRNA synthetase signature 159 175 1.3E-48 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 PRINTS PR00985 Leucyl-tRNA synthetase signature 133 150 1.3E-48 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 PRINTS PR00985 Leucyl-tRNA synthetase signature 505 523 1.3E-48 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 Pfam PF08264 Anticodon-binding domain of tRNA 727 848 4.1E-16 T 12-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 435 590 6.2E-9 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 885 22.309 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 Gene3D G3DSA:1.10.730.10 8 817 0.0 T 12-10-2018 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 Pfam PF09334 tRNA synthetases class I (M) 44 177 2.1E-17 T 12-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_2476 908a0649b0d99ef3d57282e290f9e7f4 885 SUPERFAMILY SSF52374 4 688 1.06E-145 T 12-10-2018 ALFP_1734 65ed26e5c9c66d5a6059bd38d5e09ddf 680 SUPERFAMILY SSF56601 59 158 1.29E-6 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like ALFP_1734 65ed26e5c9c66d5a6059bd38d5e09ddf 680 Gene3D G3DSA:3.40.1190.10 297 524 4.8E-44 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 ALFP_1734 65ed26e5c9c66d5a6059bd38d5e09ddf 680 Gene3D G3DSA:3.90.190.20 534 675 3.5E-26 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 ALFP_1734 65ed26e5c9c66d5a6059bd38d5e09ddf 680 Pfam PF08245 Mur ligase middle domain 321 508 1.0E-32 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 ALFP_1734 65ed26e5c9c66d5a6059bd38d5e09ddf 680 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 59 138 1.5E-7 T 12-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 ALFP_1734 65ed26e5c9c66d5a6059bd38d5e09ddf 680 Pfam PF02875 Mur ligase family, glutamate ligase domain 542 614 1.7E-6 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 ALFP_1734 65ed26e5c9c66d5a6059bd38d5e09ddf 680 Gene3D G3DSA:3.40.710.10 58 243 2.4E-7 T 12-10-2018 ALFP_1734 65ed26e5c9c66d5a6059bd38d5e09ddf 680 SUPERFAMILY SSF53244 542 666 3.2E-24 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 ALFP_1734 65ed26e5c9c66d5a6059bd38d5e09ddf 680 SUPERFAMILY SSF53623 317 524 1.7E-37 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 ALFP_2445 fa72da2f9ecf35cc32d24926b2019a96 429 Gene3D G3DSA:3.40.50.20 1 93 1.4E-37 T 12-10-2018 ALFP_2445 fa72da2f9ecf35cc32d24926b2019a96 429 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 424 41.436 T 12-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 ALFP_2445 fa72da2f9ecf35cc32d24926b2019a96 429 SMART SM01210 332 424 8.0E-47 T 12-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 ALFP_2445 fa72da2f9ecf35cc32d24926b2019a96 429 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 100 1.7E-36 T 12-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 ALFP_2445 fa72da2f9ecf35cc32d24926b2019a96 429 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 424 8.1E-169 T 12-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 ALFP_2445 fa72da2f9ecf35cc32d24926b2019a96 429 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 333 422 4.4E-28 T 12-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 ALFP_2445 fa72da2f9ecf35cc32d24926b2019a96 429 SUPERFAMILY SSF56059 102 328 1.04E-62 T 12-10-2018 ALFP_2445 fa72da2f9ecf35cc32d24926b2019a96 429 Gene3D G3DSA:3.30.1490.20 119 188 7.4E-29 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 ALFP_2445 fa72da2f9ecf35cc32d24926b2019a96 429 SMART SM01209 101 298 4.6E-134 T 12-10-2018 ALFP_2445 fa72da2f9ecf35cc32d24926b2019a96 429 Gene3D G3DSA:3.90.600.10 332 429 7.8E-32 T 12-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 ALFP_2445 fa72da2f9ecf35cc32d24926b2019a96 429 SUPERFAMILY SSF51246 331 424 2.2E-28 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 ALFP_2445 fa72da2f9ecf35cc32d24926b2019a96 429 SUPERFAMILY SSF52440 1 101 4.17E-35 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily ALFP_2445 fa72da2f9ecf35cc32d24926b2019a96 429 Gene3D G3DSA:3.30.470.20 189 331 2.8E-56 T 12-10-2018 ALFP_2445 fa72da2f9ecf35cc32d24926b2019a96 429 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 298 5.5E-78 T 12-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 ALFP_3157 fd851e9d9bb7503816d6133d9ed621cb 485 Pfam PF02637 GatB domain 332 483 2.2E-50 T 12-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 ALFP_3157 fd851e9d9bb7503816d6133d9ed621cb 485 Gene3D G3DSA:1.10.10.410 423 485 3.0E-24 T 12-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal ALFP_3157 fd851e9d9bb7503816d6133d9ed621cb 485 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 148 162 - T 12-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 ALFP_3157 fd851e9d9bb7503816d6133d9ed621cb 485 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 2 484 37.64 T 12-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 ALFP_3157 fd851e9d9bb7503816d6133d9ed621cb 485 SUPERFAMILY SSF89095 301 406 1.24E-32 T 12-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 ALFP_3157 fd851e9d9bb7503816d6133d9ed621cb 485 SMART SM00845 332 483 5.6E-78 T 12-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 ALFP_3157 fd851e9d9bb7503816d6133d9ed621cb 485 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 1 483 1.7E-164 T 12-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 ALFP_3157 fd851e9d9bb7503816d6133d9ed621cb 485 Pfam PF02934 GatB/GatE catalytic domain 5 293 2.1E-108 T 12-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 ALFP_3157 fd851e9d9bb7503816d6133d9ed621cb 485 Gene3D G3DSA:1.10.150.380 301 422 3.0E-32 T 12-10-2018 ALFP_3157 fd851e9d9bb7503816d6133d9ed621cb 485 SUPERFAMILY SSF55931 4 300 2.88E-116 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 ALFP_1724 f174fa4bff11475a6ce045b31b08a22c 243 Gene3D G3DSA:1.10.10.10 153 243 2.8E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1724 f174fa4bff11475a6ce045b31b08a22c 243 SMART SM00862 167 240 9.8E-11 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_1724 f174fa4bff11475a6ce045b31b08a22c 243 Pfam PF00486 Transcriptional regulatory protein, C terminal 169 240 6.1E-13 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_1724 f174fa4bff11475a6ce045b31b08a22c 243 SUPERFAMILY SSF46894 159 240 9.35E-14 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ALFP_3431 e2821c0fe3e6f1a8f1c5b9dd827c8245 195 SUPERFAMILY SSF54211 1 85 6.58E-34 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_3431 e2821c0fe3e6f1a8f1c5b9dd827c8245 195 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 61 74 - T 12-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 ALFP_3431 e2821c0fe3e6f1a8f1c5b9dd827c8245 195 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 156 168 - T 12-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 ALFP_3431 e2821c0fe3e6f1a8f1c5b9dd827c8245 195 Gene3D G3DSA:3.30.230.40 1 89 4.4E-37 T 12-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 ALFP_3431 e2821c0fe3e6f1a8f1c5b9dd827c8245 195 Gene3D G3DSA:3.30.230.40 90 195 1.8E-38 T 12-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 ALFP_3431 e2821c0fe3e6f1a8f1c5b9dd827c8245 195 SUPERFAMILY SSF54211 87 179 7.44E-33 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_3431 e2821c0fe3e6f1a8f1c5b9dd827c8245 195 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 32 174 3.6E-61 T 12-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 ALFP_3431 e2821c0fe3e6f1a8f1c5b9dd827c8245 195 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 2 195 41.69 T 12-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 ALFP_0384 87c73f3f2005f5246c2324d456b55fa6 291 Pfam PF09830 ATP adenylyltransferase 229 287 6.1E-14 T 12-10-2018 IPR019200 ATP adenylyltransferase, C-terminal GO:0003877 KEGG: 00230+2.7.7.53|KEGG: 00920+2.7.7.5|MetaCyc: PWY-5279 ALFP_0384 87c73f3f2005f5246c2324d456b55fa6 291 Gene3D G3DSA:3.30.428.70 1 291 8.0E-56 T 12-10-2018 ALFP_0384 87c73f3f2005f5246c2324d456b55fa6 291 SUPERFAMILY SSF54197 34 153 1.45E-12 T 12-10-2018 IPR036265 HIT-like superfamily ALFP_0384 87c73f3f2005f5246c2324d456b55fa6 291 PIRSF PIRSF000846 1 291 1.1E-62 T 12-10-2018 IPR009163 ATP adenylyltransferase GO:0003877|GO:0005524|GO:0009117 KEGG: 00230+2.7.7.53|KEGG: 00920+2.7.7.5|MetaCyc: PWY-5279 ALFP_0693 0689882561da8c89e9a1483eceb70838 351 Gene3D G3DSA:1.10.287.470 85 157 2.9E-61 T 12-10-2018 ALFP_0693 0689882561da8c89e9a1483eceb70838 351 SUPERFAMILY SSF111369 42 261 3.14E-22 T 12-10-2018 ALFP_0693 0689882561da8c89e9a1483eceb70838 351 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 32 344 1.5E-60 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 ALFP_0693 0689882561da8c89e9a1483eceb70838 351 Gene3D G3DSA:2.40.50.100 51 197 2.9E-61 T 12-10-2018 ALFP_0693 0689882561da8c89e9a1483eceb70838 351 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 254 4.8E-17 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain ALFP_0693 0689882561da8c89e9a1483eceb70838 351 Gene3D G3DSA:2.40.420.20 34 342 2.9E-61 T 12-10-2018 ALFP_0693 0689882561da8c89e9a1483eceb70838 351 Gene3D G3DSA:2.40.30.170 37 269 2.9E-61 T 12-10-2018 ALFP_3353 da241f97034bde97572fbde773fc0742 752 Gene3D G3DSA:2.40.170.20 185 752 3.7E-178 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_3353 da241f97034bde97572fbde773fc0742 752 SUPERFAMILY SSF56935 43 752 1.62E-128 T 12-10-2018 ALFP_3353 da241f97034bde97572fbde773fc0742 752 Gene3D G3DSA:2.170.130.10 36 179 2.3E-41 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_3353 da241f97034bde97572fbde773fc0742 752 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 735 752 - T 12-10-2018 IPR010917 TonB-dependent receptor, conserved site ALFP_3353 da241f97034bde97572fbde773fc0742 752 Pfam PF07715 TonB-dependent Receptor Plug Domain 60 174 3.3E-28 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_3353 da241f97034bde97572fbde773fc0742 752 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 61 752 5.9E-76 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 ALFP_3353 da241f97034bde97572fbde773fc0742 752 Pfam PF00593 TonB dependent receptor 317 750 2.1E-59 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_0154 8b4b9197d081fee6494a5d44e2e5ee88 708 Pfam PF07715 TonB-dependent Receptor Plug Domain 66 162 1.8E-9 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_0154 8b4b9197d081fee6494a5d44e2e5ee88 708 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 68 708 1.7E-106 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 ALFP_0154 8b4b9197d081fee6494a5d44e2e5ee88 708 Pfam PF00593 TonB dependent receptor 271 707 2.7E-38 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_0154 8b4b9197d081fee6494a5d44e2e5ee88 708 Gene3D G3DSA:2.40.170.20 178 708 1.5E-82 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_0154 8b4b9197d081fee6494a5d44e2e5ee88 708 Gene3D G3DSA:2.170.130.10 62 177 5.4E-18 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_0154 8b4b9197d081fee6494a5d44e2e5ee88 708 SUPERFAMILY SSF56935 24 708 1.45E-97 T 12-10-2018 ALFP_0154 8b4b9197d081fee6494a5d44e2e5ee88 708 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 691 708 - T 12-10-2018 IPR010917 TonB-dependent receptor, conserved site ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 Gene3D G3DSA:1.10.287.130 773 853 9.9E-11 T 12-10-2018 ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 896 1005 1.6E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 Gene3D G3DSA:1.20.1730.10 38 468 3.0E-14 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 SUPERFAMILY SSF47384 771 851 1.12E-11 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 Gene3D G3DSA:3.30.565.10 857 1013 1.8E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 SUPERFAMILY SSF52172 1028 1145 1.08E-16 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 Pfam PF12860 PAS fold 643 759 4.4E-39 T 12-10-2018 ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 SMART SM00448 1030 1140 4.5E-12 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 Pfam PF00512 His Kinase A (phospho-acceptor) domain 786 851 9.9E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 SMART SM00388 786 851 2.2E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 Gene3D G3DSA:3.40.50.2300 1027 1146 1.6E-15 T 12-10-2018 ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 SMART SM00387 895 1006 2.9E-24 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 Gene3D G3DSA:3.30.450.20 624 761 4.6E-14 T 12-10-2018 ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 Pfam PF00072 Response regulator receiver domain 1032 1138 3.6E-8 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 SUPERFAMILY SSF55785 628 753 5.76E-9 T 12-10-2018 IPR035965 PAS domain superfamily ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 SMART SM00091 637 704 6.2E-4 T 12-10-2018 IPR000014 PAS domain ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 PRINTS PR00344 Bacterial sensor protein C-terminal signature 966 984 4.3E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 PRINTS PR00344 Bacterial sensor protein C-terminal signature 931 945 4.3E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 PRINTS PR00344 Bacterial sensor protein C-terminal signature 990 1003 4.3E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2377 ee36b7ea11b71b11a2f600ad8eb20e44 1147 SUPERFAMILY SSF55874 841 1009 1.1E-37 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_1921 6d21393fd9ac77d275869896eec77220 399 Pfam PF00589 Phage integrase family 205 383 9.0E-23 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 ALFP_1921 6d21393fd9ac77d275869896eec77220 399 SUPERFAMILY SSF56349 48 391 1.04E-34 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 ALFP_1921 6d21393fd9ac77d275869896eec77220 399 Gene3D G3DSA:1.10.150.130 44 161 8.6E-8 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal ALFP_1921 6d21393fd9ac77d275869896eec77220 399 Gene3D G3DSA:1.10.443.10 162 397 8.0E-34 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 ALFP_2257 e421e64d61b9d3aee0fd1f65ed91b870 628 ProSitePatterns PS00211 ABC transporters family signature. 492 506 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_2257 e421e64d61b9d3aee0fd1f65ed91b870 628 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 571 601 8.7E-7 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ALFP_2257 e421e64d61b9d3aee0fd1f65ed91b870 628 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 231 297 2.2E-14 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ALFP_2257 e421e64d61b9d3aee0fd1f65ed91b870 628 Pfam PF00005 ABC transporter 25 179 1.3E-24 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2257 e421e64d61b9d3aee0fd1f65ed91b870 628 Pfam PF00005 ABC transporter 368 518 3.4E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2257 e421e64d61b9d3aee0fd1f65ed91b870 628 SUPERFAMILY SSF52540 4 250 7.14E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2257 e421e64d61b9d3aee0fd1f65ed91b870 628 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 230 315 1.4E-17 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ALFP_2257 e421e64d61b9d3aee0fd1f65ed91b870 628 SMART SM00382 34 228 3.4E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2257 e421e64d61b9d3aee0fd1f65ed91b870 628 SMART SM00382 377 569 2.0E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2257 e421e64d61b9d3aee0fd1f65ed91b870 628 Gene3D G3DSA:3.40.50.300 342 617 7.8E-80 T 12-10-2018 ALFP_2257 e421e64d61b9d3aee0fd1f65ed91b870 628 Gene3D G3DSA:3.40.50.300 3 331 9.5E-86 T 12-10-2018 ALFP_2257 e421e64d61b9d3aee0fd1f65ed91b870 628 SUPERFAMILY SSF52540 345 590 3.66E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2257 e421e64d61b9d3aee0fd1f65ed91b870 628 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1352 0e265515c3668bc1deb561883999439e 338 Pfam PF00072 Response regulator receiver domain 12 121 5.2E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_1352 0e265515c3668bc1deb561883999439e 338 Pfam PF01966 HD domain 157 278 2.3E-19 T 12-10-2018 IPR006674 HD domain ALFP_1352 0e265515c3668bc1deb561883999439e 338 SUPERFAMILY SSF109604 131 319 6.28E-43 T 12-10-2018 ALFP_1352 0e265515c3668bc1deb561883999439e 338 SMART SM00471 151 288 4.1E-10 T 12-10-2018 IPR003607 HD/PDEase domain ALFP_1352 0e265515c3668bc1deb561883999439e 338 SMART SM00448 9 121 3.9E-38 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_1352 0e265515c3668bc1deb561883999439e 338 Gene3D G3DSA:1.10.3210.10 134 332 3.5E-77 T 12-10-2018 ALFP_1352 0e265515c3668bc1deb561883999439e 338 SUPERFAMILY SSF52172 7 132 6.69E-40 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_1352 0e265515c3668bc1deb561883999439e 338 Gene3D G3DSA:3.40.50.2300 2 133 2.3E-37 T 12-10-2018 ALFP_2290 8c886314a4b1d81ac4a37a86cdc56de0 360 PRINTS PR00406 Cytochrome B5 reductase signature 91 105 2.5E-7 T 12-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 ALFP_2290 8c886314a4b1d81ac4a37a86cdc56de0 360 PRINTS PR00406 Cytochrome B5 reductase signature 116 135 2.5E-7 T 12-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 ALFP_2290 8c886314a4b1d81ac4a37a86cdc56de0 360 PRINTS PR00406 Cytochrome B5 reductase signature 153 164 2.5E-7 T 12-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 ALFP_2290 8c886314a4b1d81ac4a37a86cdc56de0 360 PRINTS PR00406 Cytochrome B5 reductase signature 212 220 2.5E-7 T 12-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 ALFP_2290 8c886314a4b1d81ac4a37a86cdc56de0 360 SUPERFAMILY SSF54292 237 355 7.34E-28 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_2290 8c886314a4b1d81ac4a37a86cdc56de0 360 Gene3D G3DSA:3.40.50.80 102 240 9.9E-28 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_2290 8c886314a4b1d81ac4a37a86cdc56de0 360 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 274 347 1.0E-16 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_2290 8c886314a4b1d81ac4a37a86cdc56de0 360 Pfam PF00175 Oxidoreductase NAD-binding domain 119 225 3.1E-16 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ALFP_2290 8c886314a4b1d81ac4a37a86cdc56de0 360 Gene3D G3DSA:2.40.30.10 2 101 1.9E-23 T 12-10-2018 ALFP_2290 8c886314a4b1d81ac4a37a86cdc56de0 360 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 305 313 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ALFP_2290 8c886314a4b1d81ac4a37a86cdc56de0 360 Gene3D G3DSA:3.10.20.30 252 360 1.4E-28 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_2290 8c886314a4b1d81ac4a37a86cdc56de0 360 SUPERFAMILY SSF63380 2 105 3.4E-24 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_2290 8c886314a4b1d81ac4a37a86cdc56de0 360 Pfam PF00970 Oxidoreductase FAD-binding domain 8 103 1.4E-9 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 ALFP_2290 8c886314a4b1d81ac4a37a86cdc56de0 360 SUPERFAMILY SSF52343 94 242 7.73E-31 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_2290 8c886314a4b1d81ac4a37a86cdc56de0 360 TIGRFAM TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit 4 357 1.6E-138 T 12-10-2018 IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit GO:0010124 ALFP_3190 f3df74d4c77d08663189dbc53eb306e3 791 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 155 791 1.0E-106 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 ALFP_3190 f3df74d4c77d08663189dbc53eb306e3 791 Gene3D G3DSA:2.40.170.20 262 791 5.0E-179 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_3190 f3df74d4c77d08663189dbc53eb306e3 791 Pfam PF00593 TonB dependent receptor 343 789 7.4E-49 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_3190 f3df74d4c77d08663189dbc53eb306e3 791 Gene3D G3DSA:2.170.130.10 129 261 1.6E-45 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_3190 f3df74d4c77d08663189dbc53eb306e3 791 Pfam PF07715 TonB-dependent Receptor Plug Domain 152 253 1.5E-14 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_3190 f3df74d4c77d08663189dbc53eb306e3 791 Gene3D G3DSA:3.55.50.30 31 100 2.1E-18 T 12-10-2018 ALFP_3190 f3df74d4c77d08663189dbc53eb306e3 791 SUPERFAMILY SSF56935 107 791 5.98E-127 T 12-10-2018 ALFP_3190 f3df74d4c77d08663189dbc53eb306e3 791 SMART SM00965 52 102 1.0E-6 T 12-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 Pfam PF08245 Mur ligase middle domain 571 761 1.3E-40 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 Pfam PF08245 Mur ligase middle domain 103 304 1.2E-47 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 462 912 32.338 T 12-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 484 31.292 T 12-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 19 484 3.9E-139 T 12-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 Gene3D G3DSA:3.40.1390.10 485 546 1.6E-18 T 12-10-2018 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 Gene3D G3DSA:3.40.1190.10 547 779 1.8E-72 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 SUPERFAMILY SSF53623 565 780 6.67E-52 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 Pfam PF01225 Mur ligase family, catalytic domain 20 91 8.9E-11 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 Pfam PF01225 Mur ligase family, catalytic domain 492 547 1.4E-8 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 Pfam PF02875 Mur ligase family, glutamate ligase domain 325 419 4.3E-19 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 Pfam PF02875 Mur ligase family, glutamate ligase domain 781 862 2.9E-16 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 Gene3D G3DSA:3.40.1390.10 3 93 3.8E-19 T 12-10-2018 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 Gene3D G3DSA:3.90.190.20 340 484 2.3E-49 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 SUPERFAMILY SSF63418 491 563 3.66E-19 T 12-10-2018 IPR035911 MurE/MurF, N-terminal ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 Gene3D G3DSA:3.90.190.20 780 916 1.2E-42 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 SUPERFAMILY SSF53623 94 322 3.4E-68 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 SUPERFAMILY SSF53244 781 911 4.12E-37 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 SUPERFAMILY SSF63418 16 92 1.31E-17 T 12-10-2018 IPR035911 MurE/MurF, N-terminal ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 494 911 2.0E-132 T 12-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 Gene3D G3DSA:3.40.1190.10 94 329 2.5E-72 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 ALFP_0789 4ce53943076dbd4604a071787c1f0aba 925 SUPERFAMILY SSF53244 325 485 1.98E-38 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 ALFP_0882 fdf0389c28f69859405a355b2ac91292 272 SUPERFAMILY SSF161098 66 249 6.8E-30 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0882 fdf0389c28f69859405a355b2ac91292 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 259 3.2E-25 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0882 fdf0389c28f69859405a355b2ac91292 272 Gene3D G3DSA:1.10.3720.10 68 259 6.2E-23 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0783 fbfe93d3f9dfd3d2083a6f64f97466d1 102 Gene3D G3DSA:3.10.20.30 3 97 2.9E-16 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_0783 fbfe93d3f9dfd3d2083a6f64f97466d1 102 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 34 42 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ALFP_0783 fbfe93d3f9dfd3d2083a6f64f97466d1 102 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 11 73 3.6E-9 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_0783 fbfe93d3f9dfd3d2083a6f64f97466d1 102 SUPERFAMILY SSF54292 7 81 1.7E-17 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_2056 4e20442c725a941b99fce961f248abc2 275 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 221 262 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ALFP_2056 4e20442c725a941b99fce961f248abc2 275 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 250 266 3.1E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_2056 4e20442c725a941b99fce961f248abc2 275 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 235 250 3.1E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_2056 4e20442c725a941b99fce961f248abc2 275 Pfam PF12833 Helix-turn-helix domain 190 268 2.4E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_2056 4e20442c725a941b99fce961f248abc2 275 Gene3D G3DSA:2.60.120.10 29 108 1.9E-9 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_2056 4e20442c725a941b99fce961f248abc2 275 Gene3D G3DSA:1.10.10.60 169 269 8.1E-24 T 12-10-2018 ALFP_2056 4e20442c725a941b99fce961f248abc2 275 Pfam PF02311 AraC-like ligand binding domain 29 118 3.6E-11 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 ALFP_2056 4e20442c725a941b99fce961f248abc2 275 SUPERFAMILY SSF46689 221 268 6.27E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2056 4e20442c725a941b99fce961f248abc2 275 SMART SM00342 184 266 1.0E-23 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_2056 4e20442c725a941b99fce961f248abc2 275 SUPERFAMILY SSF51182 27 192 8.6E-20 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_1530 a3911651eaffc7dd1b86a1090691d091 763 SUPERFAMILY SSF51726 400 760 1.44E-117 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 ALFP_1530 a3911651eaffc7dd1b86a1090691d091 763 Gene3D G3DSA:3.20.20.210 393 760 0.0 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 ALFP_1530 a3911651eaffc7dd1b86a1090691d091 763 PIRSF PIRSF000382 1 763 0.0 T 12-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 ALFP_1530 a3911651eaffc7dd1b86a1090691d091 763 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 7 761 0.0 T 12-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 ALFP_1530 a3911651eaffc7dd1b86a1090691d091 763 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 2 762 37.57 T 12-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 ALFP_1530 a3911651eaffc7dd1b86a1090691d091 763 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 435 757 2.3E-157 T 12-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 ALFP_1530 a3911651eaffc7dd1b86a1090691d091 763 SUPERFAMILY SSF51726 5 398 2.49E-113 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 ALFP_1530 a3911651eaffc7dd1b86a1090691d091 763 Gene3D G3DSA:3.20.20.210 6 528 0.0 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 ALFP_1530 a3911651eaffc7dd1b86a1090691d091 763 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 4 319 1.9E-117 T 12-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 ALFP_3303 794c1c6b509a1ca99d381aec10eab452 119 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 5 117 1.1E-22 T 12-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 ALFP_3303 794c1c6b509a1ca99d381aec10eab452 119 Gene3D G3DSA:3.30.1130.10 1 119 8.1E-34 T 12-10-2018 ALFP_3303 794c1c6b509a1ca99d381aec10eab452 119 SMART SM00905 6 117 5.5E-30 T 12-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 ALFP_3303 794c1c6b509a1ca99d381aec10eab452 119 TIGRFAM TIGR00526 folB_dom: FolB domain 5 119 4.4E-19 T 12-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 ALFP_3303 794c1c6b509a1ca99d381aec10eab452 119 SUPERFAMILY SSF55620 3 119 3.34E-27 T 12-10-2018 ALFP_3303 794c1c6b509a1ca99d381aec10eab452 119 Pfam PF02152 Dihydroneopterin aldolase 6 116 3.2E-26 T 12-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 ALFP_2456 869bd51e5185da4ea34442643b0d638d 291 SUPERFAMILY SSF48179 164 284 1.47E-30 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_2456 869bd51e5185da4ea34442643b0d638d 291 Gene3D G3DSA:1.10.1040.10 163 290 3.7E-32 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ALFP_2456 869bd51e5185da4ea34442643b0d638d 291 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 283 1.8E-26 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 ALFP_2456 869bd51e5185da4ea34442643b0d638d 291 PIRSF PIRSF000103 1 290 2.6E-74 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 ALFP_2456 869bd51e5185da4ea34442643b0d638d 291 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 162 6.2E-47 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 ALFP_2456 869bd51e5185da4ea34442643b0d638d 291 SUPERFAMILY SSF51735 1 163 2.31E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2456 869bd51e5185da4ea34442643b0d638d 291 Gene3D G3DSA:3.40.50.720 1 162 1.2E-51 T 12-10-2018 ALFP_1239 a146f6dd5c28f79ed32ceb2fb2c9df99 1272 SUPERFAMILY SSF48452 37 230 5.96E-20 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_1239 a146f6dd5c28f79ed32ceb2fb2c9df99 1272 Pfam PF13847 Methyltransferase domain 1122 1224 4.2E-8 T 12-10-2018 IPR025714 Methyltransferase domain ALFP_1239 a146f6dd5c28f79ed32ceb2fb2c9df99 1272 SUPERFAMILY SSF52540 256 467 1.52E-24 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1239 a146f6dd5c28f79ed32ceb2fb2c9df99 1272 Gene3D G3DSA:1.25.40.10 790 1085 5.5E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_1239 a146f6dd5c28f79ed32ceb2fb2c9df99 1272 SUPERFAMILY SSF48452 844 1028 6.01E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_1239 a146f6dd5c28f79ed32ceb2fb2c9df99 1272 Gene3D G3DSA:3.40.50.150 1098 1253 8.9E-17 T 12-10-2018 ALFP_1239 a146f6dd5c28f79ed32ceb2fb2c9df99 1272 Gene3D G3DSA:1.25.40.10 19 247 1.5E-24 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_1239 a146f6dd5c28f79ed32ceb2fb2c9df99 1272 SUPERFAMILY SSF53335 1060 1266 7.23E-19 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_1239 a146f6dd5c28f79ed32ceb2fb2c9df99 1272 Gene3D G3DSA:3.40.50.300 264 518 1.9E-24 T 12-10-2018 ALFP_1239 a146f6dd5c28f79ed32ceb2fb2c9df99 1272 Pfam PF14559 Tetratricopeptide repeat 73 135 4.5E-6 T 12-10-2018 ALFP_1239 a146f6dd5c28f79ed32ceb2fb2c9df99 1272 Pfam PF13469 Sulfotransferase family 270 455 8.3E-17 T 12-10-2018 ALFP_1239 a146f6dd5c28f79ed32ceb2fb2c9df99 1272 SMART SM00028 854 887 330.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_1239 a146f6dd5c28f79ed32ceb2fb2c9df99 1272 SMART SM00028 59 92 18.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_1239 a146f6dd5c28f79ed32ceb2fb2c9df99 1272 SMART SM00028 128 161 4.8 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_1239 a146f6dd5c28f79ed32ceb2fb2c9df99 1272 SMART SM00028 963 996 120.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_1239 a146f6dd5c28f79ed32ceb2fb2c9df99 1272 SMART SM00028 201 234 33.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_1239 a146f6dd5c28f79ed32ceb2fb2c9df99 1272 SMART SM00028 94 127 38.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_2702 6e113e8d0abce1674738b1c56393161e 315 SUPERFAMILY SSF53213 6 311 7.85E-68 T 12-10-2018 ALFP_2702 6e113e8d0abce1674738b1c56393161e 315 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 7 306 1.6E-62 T 12-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 ALFP_2702 6e113e8d0abce1674738b1c56393161e 315 Hamap MF_01653 2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase [mhpB]. 1 313 50.408 T 12-10-2018 IPR023789 2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase GO:0005506|GO:0019439|GO:0047070|GO:0055114 KEGG: 00360+1.13.11.16|MetaCyc: PWY-6690 ALFP_0534 13a7a00f0464e76bdf597163ea093929 115 SUPERFAMILY SSF54909 16 108 1.26E-31 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel ALFP_0534 13a7a00f0464e76bdf597163ea093929 115 Pfam PF08803 Putative mono-oxygenase ydhR 16 111 4.5E-41 T 12-10-2018 IPR014910 Putative monooxygenase YdhR ALFP_0534 13a7a00f0464e76bdf597163ea093929 115 Gene3D G3DSA:3.30.70.100 8 115 2.8E-42 T 12-10-2018 ALFP_2181 2c2528a2a321fdd77e90dfc96e182803 357 SUPERFAMILY SSF51905 2 351 3.48E-28 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2181 2c2528a2a321fdd77e90dfc96e182803 357 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 269 284 4.4E-8 T 12-10-2018 ALFP_2181 2c2528a2a321fdd77e90dfc96e182803 357 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 1 22 4.4E-8 T 12-10-2018 ALFP_2181 2c2528a2a321fdd77e90dfc96e182803 357 Pfam PF04820 Tryptophan halogenase 88 353 1.2E-7 T 12-10-2018 IPR006905 Flavin-dependent halogenase ALFP_2181 2c2528a2a321fdd77e90dfc96e182803 357 Gene3D G3DSA:3.30.9.100 35 260 9.3E-49 T 12-10-2018 ALFP_2181 2c2528a2a321fdd77e90dfc96e182803 357 Gene3D G3DSA:3.50.50.60 2 352 9.3E-49 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2181 2c2528a2a321fdd77e90dfc96e182803 357 Pfam PF00890 FAD binding domain 2 34 6.0E-5 T 12-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_0555 27ba544f792517665aee41ca547310d6 67 SMART SM00530 4 59 3.3E-17 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_0555 27ba544f792517665aee41ca547310d6 67 SUPERFAMILY SSF47413 2 62 5.63E-18 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_0555 27ba544f792517665aee41ca547310d6 67 Pfam PF01381 Helix-turn-helix 5 59 2.0E-15 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_0555 27ba544f792517665aee41ca547310d6 67 Gene3D G3DSA:1.10.260.40 1 63 2.0E-24 T 12-10-2018 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 7.2E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 7.2E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 7.2E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 7.2E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 7.2E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 7.2E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 7.2E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 7.2E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 7.2E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 SUPERFAMILY SSF82866 809 1030 9.81E-42 T 12-10-2018 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 Gene3D G3DSA:1.20.1640.10 8 513 0.0 T 12-10-2018 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 Gene3D G3DSA:3.30.2090.10 179 275 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 Gene3D G3DSA:3.30.70.1320 133 332 0.0 T 12-10-2018 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 Gene3D G3DSA:3.30.70.1430 38 819 0.0 T 12-10-2018 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 Gene3D G3DSA:3.30.2090.10 723 811 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 SUPERFAMILY SSF82693 135 330 1.41E-22 T 12-10-2018 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 SUPERFAMILY SSF82693 566 669 1.31E-26 T 12-10-2018 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 SUPERFAMILY SSF82866 298 497 3.79E-48 T 12-10-2018 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 SUPERFAMILY SSF82714 182 272 1.07E-21 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 Pfam PF00873 AcrB/AcrD/AcrF family 1 1027 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 SUPERFAMILY SSF82693 38 130 3.66E-24 T 12-10-2018 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 Gene3D G3DSA:3.30.70.1430 568 668 0.0 T 12-10-2018 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 SUPERFAMILY SSF82714 724 807 1.44E-17 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1037 0.0 T 12-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 Gene3D G3DSA:1.20.1640.10 514 1024 0.0 T 12-10-2018 ALFP_1998 1f0b1333fc2db693c348e5d552c952b8 1064 Gene3D G3DSA:3.30.70.1440 669 867 0.0 T 12-10-2018 ALFP_2980 28a1758a45b3d3da306c9361a3d4f37a 446 Pfam PF02954 Bacterial regulatory protein, Fis family 391 431 8.4E-6 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_2980 28a1758a45b3d3da306c9361a3d4f37a 446 Pfam PF00072 Response regulator receiver domain 3 112 5.8E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2980 28a1758a45b3d3da306c9361a3d4f37a 446 Gene3D G3DSA:3.40.50.2300 1 132 1.3E-36 T 12-10-2018 ALFP_2980 28a1758a45b3d3da306c9361a3d4f37a 446 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 ALFP_2980 28a1758a45b3d3da306c9361a3d4f37a 446 SMART SM00448 1 112 2.0E-31 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2980 28a1758a45b3d3da306c9361a3d4f37a 446 Gene3D G3DSA:1.10.10.60 380 435 1.9E-10 T 12-10-2018 ALFP_2980 28a1758a45b3d3da306c9361a3d4f37a 446 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 354 363 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site ALFP_2980 28a1758a45b3d3da306c9361a3d4f37a 446 Gene3D G3DSA:1.10.8.60 312 378 3.8E-17 T 12-10-2018 ALFP_2980 28a1758a45b3d3da306c9361a3d4f37a 446 SUPERFAMILY SSF46689 383 433 2.33E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2980 28a1758a45b3d3da306c9361a3d4f37a 446 SMART SM00382 161 304 2.1E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2980 28a1758a45b3d3da306c9361a3d4f37a 446 SUPERFAMILY SSF52172 3 186 5.12E-42 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_2980 28a1758a45b3d3da306c9361a3d4f37a 446 SUPERFAMILY SSF52540 142 371 1.31E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2980 28a1758a45b3d3da306c9361a3d4f37a 446 Gene3D G3DSA:3.40.50.300 133 311 4.7E-55 T 12-10-2018 ALFP_2980 28a1758a45b3d3da306c9361a3d4f37a 446 Pfam PF00158 Sigma-54 interaction domain 141 307 7.9E-64 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 ALFP_1828 f09d34d4ee1cab10ce87e1eadd880a46 153 SUPERFAMILY SSF89095 4 152 7.85E-40 T 12-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 ALFP_1828 f09d34d4ee1cab10ce87e1eadd880a46 153 Pfam PF09424 Yqey-like protein 6 151 1.2E-51 T 12-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 ALFP_1828 f09d34d4ee1cab10ce87e1eadd880a46 153 Gene3D G3DSA:1.10.10.410 93 152 6.2E-14 T 12-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal ALFP_1828 f09d34d4ee1cab10ce87e1eadd880a46 153 Gene3D G3DSA:1.10.1510.10 3 92 3.8E-28 T 12-10-2018 ALFP_1107 c421099108e150c8e7cdb67e4a98e2b6 569 SMART SM00670 106 239 3.5E-9 T 12-10-2018 IPR002716 PIN domain ALFP_1107 c421099108e150c8e7cdb67e4a98e2b6 569 SUPERFAMILY SSF52540 346 549 9.88E-29 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1107 c421099108e150c8e7cdb67e4a98e2b6 569 Pfam PF02562 PhoH-like protein 347 561 2.3E-54 T 12-10-2018 IPR003714 PhoH-like protein GO:0005524 ALFP_1107 c421099108e150c8e7cdb67e4a98e2b6 569 Pfam PF13638 PIN domain 108 252 1.0E-37 T 12-10-2018 IPR002716 PIN domain ALFP_1107 c421099108e150c8e7cdb67e4a98e2b6 569 Gene3D G3DSA:3.40.50.300 345 568 3.6E-67 T 12-10-2018 ALFP_1107 c421099108e150c8e7cdb67e4a98e2b6 569 SUPERFAMILY SSF88723 106 252 1.47E-11 T 12-10-2018 IPR029060 PIN-like domain superfamily ALFP_1107 c421099108e150c8e7cdb67e4a98e2b6 569 Gene3D G3DSA:3.40.50.1010 102 254 7.7E-24 T 12-10-2018 ALFP_0055 cbe0b7ea3de5cf45552c77d9ecb9ceda 408 Gene3D G3DSA:3.40.640.10 71 294 9.4E-136 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_0055 cbe0b7ea3de5cf45552c77d9ecb9ceda 408 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 244 257 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 ALFP_0055 cbe0b7ea3de5cf45552c77d9ecb9ceda 408 SUPERFAMILY SSF53383 12 405 3.94E-111 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_0055 cbe0b7ea3de5cf45552c77d9ecb9ceda 408 Gene3D G3DSA:3.90.1150.10 34 400 9.4E-136 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_0055 cbe0b7ea3de5cf45552c77d9ecb9ceda 408 Pfam PF00155 Aminotransferase class I and II 41 400 3.6E-70 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_0656 a0c234e3310dcf3cf44035a25311e29a 333 Gene3D G3DSA:1.10.760.10 41 188 1.7E-113 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0656 a0c234e3310dcf3cf44035a25311e29a 333 Gene3D G3DSA:1.10.760.10 39 312 1.7E-113 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0656 a0c234e3310dcf3cf44035a25311e29a 333 Pfam PF03150 Di-haem cytochrome c peroxidase 41 188 3.6E-49 T 12-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 ALFP_0656 a0c234e3310dcf3cf44035a25311e29a 333 SUPERFAMILY SSF46626 175 326 2.43E-42 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0656 a0c234e3310dcf3cf44035a25311e29a 333 SUPERFAMILY SSF46626 23 176 8.05E-49 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0656 a0c234e3310dcf3cf44035a25311e29a 333 Pfam PF00034 Cytochrome c 197 306 4.5E-8 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_0656 a0c234e3310dcf3cf44035a25311e29a 333 PIRSF PIRSF000294 3 330 2.4E-131 T 12-10-2018 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 ALFP_1203 74015ac9c43dc77ede998bc017dbe987 230 Pfam PF13860 FlgD Ig-like domain 117 187 4.0E-20 T 12-10-2018 IPR025965 FlgD Ig-like domain ALFP_1203 74015ac9c43dc77ede998bc017dbe987 230 Gene3D G3DSA:2.30.30.910 89 223 4.9E-35 T 12-10-2018 ALFP_1203 74015ac9c43dc77ede998bc017dbe987 230 Pfam PF13861 FlgD Tudor-like domain 88 227 2.6E-19 T 12-10-2018 IPR025963 FlgD Tudor-like domain ALFP_1203 74015ac9c43dc77ede998bc017dbe987 230 Gene3D G3DSA:2.60.40.4070 105 196 4.9E-35 T 12-10-2018 ALFP_1203 74015ac9c43dc77ede998bc017dbe987 230 Pfam PF03963 Flagellar hook capping protein - N-terminal region 15 78 3.8E-22 T 12-10-2018 IPR005648 Flagellar hook capping protein ALFP_0838 f467c113629803ca3ce7401a0c2036e0 495 TIGRFAM TIGR03914 UDG_fam_dom: uracil-DNA glycosylase family domain 293 477 2.1E-68 T 12-10-2018 IPR005273 Uracil-DNA glycosylase family 4 ALFP_0838 f467c113629803ca3ce7401a0c2036e0 495 TIGRFAM TIGR03915 SAM_7_link_chp: probable DNA metabolism protein 5 257 4.5E-60 T 12-10-2018 IPR023875 DNA metabolism protein, putative ALFP_0838 f467c113629803ca3ce7401a0c2036e0 495 Pfam PF03167 Uracil DNA glycosylase superfamily 322 467 5.8E-33 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 ALFP_0838 f467c113629803ca3ce7401a0c2036e0 495 Gene3D G3DSA:3.40.470.10 303 488 8.9E-54 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 ALFP_0838 f467c113629803ca3ce7401a0c2036e0 495 SUPERFAMILY SSF52141 303 470 6.21E-48 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 ALFP_0838 f467c113629803ca3ce7401a0c2036e0 495 SMART SM00987 322 477 3.8E-30 T 12-10-2018 ALFP_0838 f467c113629803ca3ce7401a0c2036e0 495 Pfam PF13566 Domain of unknown function (DUF4130 94 256 1.6E-39 T 12-10-2018 IPR025404 Domain of unknown function DUF4130 ALFP_0838 f467c113629803ca3ce7401a0c2036e0 495 SMART SM00986 322 477 3.8E-30 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 ALFP_2841 b1cd168d9d7c5df91d484d4eac0b69e2 141 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 14 126 1.4E-33 T 12-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 ALFP_2841 b1cd168d9d7c5df91d484d4eac0b69e2 141 Pfam PF03061 Thioesterase superfamily 24 109 1.5E-16 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 ALFP_2841 b1cd168d9d7c5df91d484d4eac0b69e2 141 PIRSF PIRSF003230 3 141 3.1E-48 T 12-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 ALFP_2841 b1cd168d9d7c5df91d484d4eac0b69e2 141 Gene3D G3DSA:3.10.129.10 6 140 1.8E-42 T 12-10-2018 ALFP_2841 b1cd168d9d7c5df91d484d4eac0b69e2 141 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 11 133 6.0E-51 T 12-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 ALFP_2841 b1cd168d9d7c5df91d484d4eac0b69e2 141 SUPERFAMILY SSF54637 10 138 5.14E-40 T 12-10-2018 IPR029069 HotDog domain superfamily ALFP_0546 af88c153058c6f14c8775221045958b9 315 PIRSF PIRSF006431 1 315 9.4E-137 T 12-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 ALFP_0546 af88c153058c6f14c8775221045958b9 315 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 10 313 6.7E-126 T 12-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 ALFP_0546 af88c153058c6f14c8775221045958b9 315 Gene3D G3DSA:3.40.50.1820 2 315 2.5E-103 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0546 af88c153058c6f14c8775221045958b9 315 SUPERFAMILY SSF53474 4 306 2.32E-61 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0546 af88c153058c6f14c8775221045958b9 315 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 38 46 4.5E-14 T 12-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 ALFP_0546 af88c153058c6f14c8775221045958b9 315 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 108 122 4.5E-14 T 12-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 ALFP_0546 af88c153058c6f14c8775221045958b9 315 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 64 75 4.5E-14 T 12-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 ALFP_0546 af88c153058c6f14c8775221045958b9 315 Pfam PF00561 alpha/beta hydrolase fold 39 295 3.1E-28 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_0435 87b80c53d10a7818e029c06af94772d3 355 Pfam PF00589 Phage integrase family 176 343 2.1E-32 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 ALFP_0435 87b80c53d10a7818e029c06af94772d3 355 Gene3D G3DSA:1.10.150.130 55 171 6.2E-10 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal ALFP_0435 87b80c53d10a7818e029c06af94772d3 355 SUPERFAMILY SSF56349 59 346 1.39E-57 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 ALFP_0435 87b80c53d10a7818e029c06af94772d3 355 Gene3D G3DSA:1.10.443.10 173 352 2.4E-34 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 ALFP_1668 504f2052ac32574abfebaad7a520daa8 353 SUPERFAMILY SSF63380 105 199 1.04E-26 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_1668 504f2052ac32574abfebaad7a520daa8 353 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 81 3.2E-17 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_1668 504f2052ac32574abfebaad7a520daa8 353 Pfam PF00175 Oxidoreductase NAD-binding domain 210 315 3.7E-15 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ALFP_1668 504f2052ac32574abfebaad7a520daa8 353 SUPERFAMILY SSF52343 204 335 1.2E-32 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_1668 504f2052ac32574abfebaad7a520daa8 353 Gene3D G3DSA:2.40.30.10 105 199 3.6E-27 T 12-10-2018 ALFP_1668 504f2052ac32574abfebaad7a520daa8 353 SUPERFAMILY SSF54292 1 88 2.1E-28 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_1668 504f2052ac32574abfebaad7a520daa8 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 193 202 1.9E-33 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1668 504f2052ac32574abfebaad7a520daa8 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 234 243 1.9E-33 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1668 504f2052ac32574abfebaad7a520daa8 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 149 156 1.9E-33 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1668 504f2052ac32574abfebaad7a520daa8 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 302 310 1.9E-33 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1668 504f2052ac32574abfebaad7a520daa8 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 144 1.9E-33 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1668 504f2052ac32574abfebaad7a520daa8 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 209 228 1.9E-33 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1668 504f2052ac32574abfebaad7a520daa8 353 Gene3D G3DSA:3.10.20.30 1 93 1.3E-26 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_1668 504f2052ac32574abfebaad7a520daa8 353 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ALFP_1668 504f2052ac32574abfebaad7a520daa8 353 Gene3D G3DSA:3.40.50.80 200 339 8.7E-28 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_1668 504f2052ac32574abfebaad7a520daa8 353 Pfam PF00970 Oxidoreductase FAD-binding domain 108 198 2.2E-17 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 ALFP_0680 fa1d504640354881c92956dd5858ef78 212 Pfam PF00072 Response regulator receiver domain 8 117 7.0E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_0680 fa1d504640354881c92956dd5858ef78 212 SUPERFAMILY SSF46894 134 198 1.05E-17 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ALFP_0680 fa1d504640354881c92956dd5858ef78 212 Gene3D G3DSA:3.40.50.2300 1 135 2.5E-44 T 12-10-2018 ALFP_0680 fa1d504640354881c92956dd5858ef78 212 SMART SM00421 141 198 8.3E-19 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_0680 fa1d504640354881c92956dd5858ef78 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 158 185 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_0680 fa1d504640354881c92956dd5858ef78 212 SUPERFAMILY SSF52172 8 153 2.28E-32 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_0680 fa1d504640354881c92956dd5858ef78 212 SMART SM00448 6 117 2.6E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_0680 fa1d504640354881c92956dd5858ef78 212 Gene3D G3DSA:1.10.10.10 136 198 3.3E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0680 fa1d504640354881c92956dd5858ef78 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 174 2.8E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_0680 fa1d504640354881c92956dd5858ef78 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 144 158 2.8E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_0680 fa1d504640354881c92956dd5858ef78 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 186 2.8E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_0680 fa1d504640354881c92956dd5858ef78 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 143 197 7.6E-18 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_1437 037f9e2a3f952aa3d9cccb8cd6a73feb 321 PIRSF PIRSF004491 5 321 1.7E-94 T 12-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 ALFP_1437 037f9e2a3f952aa3d9cccb8cd6a73feb 321 SUPERFAMILY SSF82114 184 317 4.8E-36 T 12-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 ALFP_1437 037f9e2a3f952aa3d9cccb8cd6a73feb 321 SMART SM00904 192 317 1.7E-46 T 12-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 ALFP_1437 037f9e2a3f952aa3d9cccb8cd6a73feb 321 Gene3D G3DSA:2.40.30.30 197 320 4.6E-34 T 12-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 ALFP_1437 037f9e2a3f952aa3d9cccb8cd6a73feb 321 Pfam PF01687 Riboflavin kinase 193 316 1.7E-31 T 12-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 ALFP_1437 037f9e2a3f952aa3d9cccb8cd6a73feb 321 SUPERFAMILY SSF52374 19 187 1.39E-29 T 12-10-2018 ALFP_1437 037f9e2a3f952aa3d9cccb8cd6a73feb 321 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 22 316 7.3E-85 T 12-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 ALFP_1437 037f9e2a3f952aa3d9cccb8cd6a73feb 321 Gene3D G3DSA:3.40.50.620 8 195 6.5E-58 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_1437 037f9e2a3f952aa3d9cccb8cd6a73feb 321 Pfam PF06574 FAD synthetase 16 175 3.1E-50 T 12-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 ALFP_0382 c6e0265ec7655e50baa651afc26e5076 165 Gene3D G3DSA:3.30.1330.40 45 164 2.1E-34 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_0382 c6e0265ec7655e50baa651afc26e5076 165 Pfam PF01042 Endoribonuclease L-PSP 48 154 3.2E-28 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 ALFP_0382 c6e0265ec7655e50baa651afc26e5076 165 SUPERFAMILY SSF55298 48 157 5.03E-32 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_1113 e3ff8d5ad0d7dc214d49e2b793181e0b 185 SUPERFAMILY SSF55729 3 164 3.09E-42 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_1113 e3ff8d5ad0d7dc214d49e2b793181e0b 185 Pfam PF13302 Acetyltransferase (GNAT) domain 7 141 3.2E-19 T 12-10-2018 IPR000182 GNAT domain ALFP_1113 e3ff8d5ad0d7dc214d49e2b793181e0b 185 Gene3D G3DSA:3.40.630.30 6 174 8.5E-50 T 12-10-2018 ALFP_3247 afd185e25926038aaa5ef6be647def23 241 Pfam PF13419 Haloacid dehalogenase-like hydrolase 25 205 2.9E-10 T 12-10-2018 ALFP_3247 afd185e25926038aaa5ef6be647def23 241 Gene3D G3DSA:3.40.50.1000 23 208 3.0E-28 T 12-10-2018 IPR023214 HAD superfamily ALFP_3247 afd185e25926038aaa5ef6be647def23 241 Gene3D G3DSA:1.10.150.450 34 102 3.0E-28 T 12-10-2018 ALFP_3247 afd185e25926038aaa5ef6be647def23 241 TIGRFAM TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 22 204 3.8E-45 T 12-10-2018 IPR010237 Pyrimidine 5-nucleotidase ALFP_3247 afd185e25926038aaa5ef6be647def23 241 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 161 206 1.9E-9 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 ALFP_3247 afd185e25926038aaa5ef6be647def23 241 SUPERFAMILY SSF56784 23 234 1.21E-28 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_1854 049b44f02ddf86102d710d1add101bef 458 Gene3D G3DSA:2.30.40.10 23 422 5.4E-120 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_1854 049b44f02ddf86102d710d1add101bef 458 SUPERFAMILY SSF51556 59 375 8.96E-95 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_1854 049b44f02ddf86102d710d1add101bef 458 Gene3D G3DSA:3.20.20.140 60 374 5.4E-120 T 12-10-2018 ALFP_1854 049b44f02ddf86102d710d1add101bef 458 SUPERFAMILY SSF51338 334 450 8.16E-29 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_1854 049b44f02ddf86102d710d1add101bef 458 SUPERFAMILY SSF51338 18 75 1.97E-5 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_1854 049b44f02ddf86102d710d1add101bef 458 Pfam PF01979 Amidohydrolase family 56 421 1.1E-60 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 ALFP_0753 37a015cbd31064a8314651be231a4ff8 397 Gene3D G3DSA:1.20.140.10 245 397 1.7E-42 T 12-10-2018 ALFP_0753 37a015cbd31064a8314651be231a4ff8 397 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 244 389 1.3E-28 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 ALFP_0753 37a015cbd31064a8314651be231a4ff8 397 Gene3D G3DSA:2.40.110.10 135 243 5.2E-36 T 12-10-2018 ALFP_0753 37a015cbd31064a8314651be231a4ff8 397 SUPERFAMILY SSF47203 247 394 5.15E-42 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 ALFP_0753 37a015cbd31064a8314651be231a4ff8 397 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 20 131 3.2E-34 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 ALFP_0753 37a015cbd31064a8314651be231a4ff8 397 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 136 231 2.2E-21 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 ALFP_0753 37a015cbd31064a8314651be231a4ff8 397 Gene3D G3DSA:1.10.540.10 3 134 1.2E-41 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 ALFP_0753 37a015cbd31064a8314651be231a4ff8 397 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 349 368 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 ALFP_0753 37a015cbd31064a8314651be231a4ff8 397 SUPERFAMILY SSF56645 7 243 7.85E-75 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 ALFP_1034 1ec45c26ba91f622b7bfc3c092496163 324 Hamap MF_01517 Malate dehydrogenase [mdh]. 1 323 55.038 T 12-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 ALFP_1034 1ec45c26ba91f622b7bfc3c092496163 324 SUPERFAMILY SSF51735 1 153 2.67E-45 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1034 1ec45c26ba91f622b7bfc3c092496163 324 Gene3D G3DSA:3.40.50.720 1 152 1.3E-57 T 12-10-2018 ALFP_1034 1ec45c26ba91f622b7bfc3c092496163 324 PIRSF PIRSF000102 1 323 1.1E-64 T 12-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 ALFP_1034 1ec45c26ba91f622b7bfc3c092496163 324 Gene3D G3DSA:3.90.110.10 153 324 1.2E-62 T 12-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 ALFP_1034 1ec45c26ba91f622b7bfc3c092496163 324 TIGRFAM TIGR01759 MalateDH-SF1: malate dehydrogenase 1 317 2.4E-143 T 12-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 ALFP_1034 1ec45c26ba91f622b7bfc3c092496163 324 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 150 2.2E-36 T 12-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_1034 1ec45c26ba91f622b7bfc3c092496163 324 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 155 319 1.6E-32 T 12-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 ALFP_1034 1ec45c26ba91f622b7bfc3c092496163 324 SUPERFAMILY SSF56327 155 323 2.01E-59 T 12-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 ALFP_2120 6eb9c4b9761ac182525b2c57d749989a 186 Gene3D G3DSA:3.30.1360.200 9 175 3.2E-5 T 12-10-2018 ALFP_2357 1f2f95ea661b6dc101980425d8e091d5 578 SUPERFAMILY SSF52540 25 520 2.33E-9 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2357 1f2f95ea661b6dc101980425d8e091d5 578 Gene3D G3DSA:3.40.50.300 19 295 7.6E-8 T 12-10-2018 ALFP_2547 a56e3cd956e27b66982aca1ee2cc509f 391 SUPERFAMILY SSF51690 117 387 9.22E-88 T 12-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 ALFP_2547 a56e3cd956e27b66982aca1ee2cc509f 391 SUPERFAMILY SSF54675 1 133 2.0E-43 T 12-10-2018 ALFP_2547 a56e3cd956e27b66982aca1ee2cc509f 391 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 1 390 46.093 T 12-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 ALFP_2547 a56e3cd956e27b66982aca1ee2cc509f 391 PIRSF PIRSF000484 1 376 8.1E-69 T 12-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 ALFP_2547 a56e3cd956e27b66982aca1ee2cc509f 391 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 163 388 1.1E-72 T 12-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 ALFP_2547 a56e3cd956e27b66982aca1ee2cc509f 391 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 2 389 3.6E-148 T 12-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 ALFP_2547 a56e3cd956e27b66982aca1ee2cc509f 391 Gene3D G3DSA:3.20.140.10 1 390 5.6E-151 T 12-10-2018 ALFP_1613 84b8031ee46b8672cee17585e1e5ab44 204 Pfam PF00005 ABC transporter 29 157 8.6E-18 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1613 84b8031ee46b8672cee17585e1e5ab44 204 Gene3D G3DSA:3.40.50.300 1 202 1.6E-40 T 12-10-2018 ALFP_1613 84b8031ee46b8672cee17585e1e5ab44 204 SUPERFAMILY SSF52540 2 194 1.95E-35 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0734 79c624342ac234d763886f9015b0dc9b 772 Pfam PF03949 Malic enzyme, NAD binding domain 173 367 4.2E-17 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 ALFP_0734 79c624342ac234d763886f9015b0dc9b 772 SUPERFAMILY SSF51735 171 444 5.81E-78 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0734 79c624342ac234d763886f9015b0dc9b 772 SUPERFAMILY SSF53659 438 767 1.32E-85 T 12-10-2018 ALFP_0734 79c624342ac234d763886f9015b0dc9b 772 PIRSF PIRSF036684 7 771 0.0 T 12-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 ALFP_0734 79c624342ac234d763886f9015b0dc9b 772 SUPERFAMILY SSF53223 19 169 6.04E-51 T 12-10-2018 ALFP_0734 79c624342ac234d763886f9015b0dc9b 772 SMART SM00919 171 408 2.9E-124 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 ALFP_0734 79c624342ac234d763886f9015b0dc9b 772 Pfam PF01515 Phosphate acetyl/butaryl transferase 437 763 8.6E-93 T 12-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 ALFP_0734 79c624342ac234d763886f9015b0dc9b 772 Pfam PF00390 Malic enzyme, N-terminal domain 28 159 8.1E-26 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 ALFP_0734 79c624342ac234d763886f9015b0dc9b 772 Gene3D G3DSA:3.40.50.10950 453 766 4.1E-95 T 12-10-2018 ALFP_0734 79c624342ac234d763886f9015b0dc9b 772 Gene3D G3DSA:3.40.50.10750 585 739 4.1E-95 T 12-10-2018 ALFP_0734 79c624342ac234d763886f9015b0dc9b 772 SMART SM01274 26 159 2.8E-77 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 ALFP_0734 79c624342ac234d763886f9015b0dc9b 772 Gene3D G3DSA:3.40.50.720 169 442 1.4E-76 T 12-10-2018 ALFP_0734 79c624342ac234d763886f9015b0dc9b 772 Gene3D G3DSA:3.40.50.10380 6 168 9.4E-68 T 12-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 ALFP_2262 1d8169df7d0170ad5f9cbf973dc84a2b 226 Gene3D G3DSA:1.20.120.530 78 220 4.3E-22 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_2262 1d8169df7d0170ad5f9cbf973dc84a2b 226 SUPERFAMILY SSF48008 80 210 9.15E-20 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_2262 1d8169df7d0170ad5f9cbf973dc84a2b 226 Pfam PF07729 FCD domain 84 205 2.3E-18 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_2262 1d8169df7d0170ad5f9cbf973dc84a2b 226 SMART SM00345 17 74 1.2E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2262 1d8169df7d0170ad5f9cbf973dc84a2b 226 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 66 2.2E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2262 1d8169df7d0170ad5f9cbf973dc84a2b 226 Gene3D G3DSA:1.10.10.10 10 74 6.8E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2262 1d8169df7d0170ad5f9cbf973dc84a2b 226 SMART SM00895 84 208 3.0E-14 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_2262 1d8169df7d0170ad5f9cbf973dc84a2b 226 SUPERFAMILY SSF46785 9 78 1.33E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2882 e4c8d1eb7f8155417b3f678bcfae9708 277 Pfam PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase 13 257 3.9E-74 T 12-10-2018 IPR006748 Aminoglycoside/hydroxyurea antibiotic resistance kinase GO:0006468|GO:0016773|GO:0019748 ALFP_2882 e4c8d1eb7f8155417b3f678bcfae9708 277 SUPERFAMILY SSF56112 27 266 4.23E-29 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily ALFP_0476 fcc3b7c7b25550e33c0e315cb2b70d16 173 Gene3D G3DSA:1.20.1260.10 3 173 1.8E-64 T 12-10-2018 IPR012347 Ferritin-like ALFP_0476 fcc3b7c7b25550e33c0e315cb2b70d16 173 Pfam PF05974 Domain of unknown function (DUF892) 8 161 8.0E-42 T 12-10-2018 IPR010287 Domain of unknown function DUF892 ALFP_0476 fcc3b7c7b25550e33c0e315cb2b70d16 173 SUPERFAMILY SSF47240 4 154 2.0E-43 T 12-10-2018 IPR009078 Ferritin-like superfamily ALFP_3361 c7a766811e091006feaae659f04fc0e4 753 SUPERFAMILY SSF54862 528 695 1.12E-7 T 12-10-2018 ALFP_3361 c7a766811e091006feaae659f04fc0e4 753 PIRSF PIRSF036354 3 739 5.0E-300 T 12-10-2018 IPR011399 Nitrous oxide reductase expression regulator NosR GO:0003677|GO:0016020|GO:0045893 ALFP_3361 c7a766811e091006feaae659f04fc0e4 753 SMART SM00900 90 179 7.5E-7 T 12-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 ALFP_3361 c7a766811e091006feaae659f04fc0e4 753 Pfam PF12801 4Fe-4S binding domain 612 654 1.4E-4 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ALFP_3361 c7a766811e091006feaae659f04fc0e4 753 Pfam PF12801 4Fe-4S binding domain 510 556 1.3E-13 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ALFP_1931 52de8241568fb4189ab1db5652641396 374 Pfam PF00589 Phage integrase family 172 339 2.7E-7 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 ALFP_1931 52de8241568fb4189ab1db5652641396 374 Gene3D G3DSA:1.10.443.10 136 342 8.0E-11 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 ALFP_1931 52de8241568fb4189ab1db5652641396 374 Gene3D G3DSA:1.10.150.130 21 128 8.9E-9 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal ALFP_1931 52de8241568fb4189ab1db5652641396 374 SUPERFAMILY SSF56349 26 339 1.21E-19 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 ALFP_2840 da968f0a0ad809f72a8b932c69c0f93d 578 Gene3D G3DSA:3.90.960.10 240 395 7.9E-228 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 ALFP_2840 da968f0a0ad809f72a8b932c69c0f93d 578 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 464 2.8E-44 T 12-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_2840 da968f0a0ad809f72a8b932c69c0f93d 578 SUPERFAMILY SSF55681 10 483 1.12E-102 T 12-10-2018 ALFP_2840 da968f0a0ad809f72a8b932c69c0f93d 578 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 572 4.0E-219 T 12-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 ALFP_2840 da968f0a0ad809f72a8b932c69c0f93d 578 Pfam PF04073 Aminoacyl-tRNA editing domain 257 385 8.1E-28 T 12-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 ALFP_2840 da968f0a0ad809f72a8b932c69c0f93d 578 SUPERFAMILY SSF55826 218 396 1.57E-31 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 ALFP_2840 da968f0a0ad809f72a8b932c69c0f93d 578 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 576 39.877 T 12-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 ALFP_2840 da968f0a0ad809f72a8b932c69c0f93d 578 PIRSF PIRSF001535 1 577 6.2E-260 T 12-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 ALFP_2840 da968f0a0ad809f72a8b932c69c0f93d 578 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 3.5E-17 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 ALFP_2840 da968f0a0ad809f72a8b932c69c0f93d 578 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 3.5E-17 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 ALFP_2840 da968f0a0ad809f72a8b932c69c0f93d 578 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 3.5E-17 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 ALFP_2840 da968f0a0ad809f72a8b932c69c0f93d 578 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 3.5E-17 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 ALFP_2840 da968f0a0ad809f72a8b932c69c0f93d 578 Pfam PF03129 Anticodon binding domain 481 570 7.8E-16 T 12-10-2018 IPR004154 Anticodon-binding ALFP_2840 da968f0a0ad809f72a8b932c69c0f93d 578 SUPERFAMILY SSF52954 469 575 4.83E-30 T 12-10-2018 ALFP_2840 da968f0a0ad809f72a8b932c69c0f93d 578 Gene3D G3DSA:3.40.50.800 4 558 7.9E-228 T 12-10-2018 IPR036621 Anticodon-binding domain superfamily ALFP_2840 da968f0a0ad809f72a8b932c69c0f93d 578 Gene3D G3DSA:3.30.930.10 11 470 7.9E-228 T 12-10-2018 ALFP_1058 4ddd606c9863cb7488033c871fe28c6b 111 Gene3D G3DSA:2.60.120.10 2 107 1.2E-22 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_1058 4ddd606c9863cb7488033c871fe28c6b 111 Pfam PF06249 Ethanolamine utilisation protein EutQ 20 106 1.9E-10 T 12-10-2018 IPR010424 Ethanolamine utilisation EutQ ALFP_1058 4ddd606c9863cb7488033c871fe28c6b 111 SUPERFAMILY SSF51182 15 99 1.64E-11 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_3344 f566d40ec824c9f81b74e45ded229962 305 Gene3D G3DSA:3.30.70.20 27 227 2.7E-95 T 12-10-2018 ALFP_3344 f566d40ec824c9f81b74e45ded229962 305 Gene3D G3DSA:3.30.70.20 17 162 2.7E-95 T 12-10-2018 ALFP_3344 f566d40ec824c9f81b74e45ded229962 305 Gene3D G3DSA:1.20.5.480 247 294 1.4E-13 T 12-10-2018 IPR038384 Formate dehydrogenase, C-terminal domain superfamily ALFP_3344 f566d40ec824c9f81b74e45ded229962 305 PIRSF PIRSF036298 1 304 1.5E-153 T 12-10-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 ALFP_3344 f566d40ec824c9f81b74e45ded229962 305 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 7 289 5.3E-144 T 12-10-2018 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 ALFP_3344 f566d40ec824c9f81b74e45ded229962 305 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 133 144 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site ALFP_3344 f566d40ec824c9f81b74e45ded229962 305 Pfam PF13247 4Fe-4S dicluster domain 92 188 2.6E-23 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ALFP_3344 f566d40ec824c9f81b74e45ded229962 305 Pfam PF09163 Formate dehydrogenase N, transmembrane 246 289 8.2E-23 T 12-10-2018 IPR015246 Formate dehydrogenase, transmembrane ALFP_3344 f566d40ec824c9f81b74e45ded229962 305 SUPERFAMILY SSF54862 29 271 3.66E-71 T 12-10-2018 ALFP_0798 afc3e6ed058cc56c9a78babedbac1db8 388 SUPERFAMILY SSF52490 15 207 1.7E-62 T 12-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 ALFP_0798 afc3e6ed058cc56c9a78babedbac1db8 388 Gene3D G3DSA:3.40.50.1440 6 218 8.3E-72 T 12-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 ALFP_0798 afc3e6ed058cc56c9a78babedbac1db8 388 SUPERFAMILY SSF55307 206 324 3.89E-41 T 12-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 ALFP_0798 afc3e6ed058cc56c9a78babedbac1db8 388 PRINTS PR00423 Cell division protein FtsZ signature 125 146 5.6E-46 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 ALFP_0798 afc3e6ed058cc56c9a78babedbac1db8 388 PRINTS PR00423 Cell division protein FtsZ signature 211 232 5.6E-46 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 ALFP_0798 afc3e6ed058cc56c9a78babedbac1db8 388 PRINTS PR00423 Cell division protein FtsZ signature 188 210 5.6E-46 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 ALFP_0798 afc3e6ed058cc56c9a78babedbac1db8 388 PRINTS PR00423 Cell division protein FtsZ signature 97 117 5.6E-46 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 ALFP_0798 afc3e6ed058cc56c9a78babedbac1db8 388 Gene3D G3DSA:3.30.1330.20 220 332 4.9E-36 T 12-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 ALFP_0798 afc3e6ed058cc56c9a78babedbac1db8 388 SMART SM00865 206 324 4.8E-53 T 12-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 ALFP_0798 afc3e6ed058cc56c9a78babedbac1db8 388 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 11 335 34.829 T 12-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 ALFP_0798 afc3e6ed058cc56c9a78babedbac1db8 388 SMART SM00864 15 204 2.4E-103 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 ALFP_0798 afc3e6ed058cc56c9a78babedbac1db8 388 ProSitePatterns PS01135 FtsZ protein signature 2. 96 117 - T 12-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 ALFP_0798 afc3e6ed058cc56c9a78babedbac1db8 388 Pfam PF12327 FtsZ family, C-terminal domain 221 315 1.5E-31 T 12-10-2018 IPR024757 Cell division protein FtsZ, C-terminal ALFP_0798 afc3e6ed058cc56c9a78babedbac1db8 388 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 12 326 4.4E-116 T 12-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 ALFP_0798 afc3e6ed058cc56c9a78babedbac1db8 388 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 16 172 8.4E-35 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 ALFP_2976 0238f505d3697522f4d470881a94f294 169 SUPERFAMILY SSF54292 11 87 7.6E-25 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_2976 0238f505d3697522f4d470881a94f294 169 SUPERFAMILY SSF47741 94 165 4.32E-33 T 12-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily ALFP_2976 0238f505d3697522f4d470881a94f294 169 Gene3D G3DSA:3.10.20.30 8 83 8.0E-30 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_2976 0238f505d3697522f4d470881a94f294 169 Pfam PF01799 [2Fe-2S] binding domain 82 155 4.1E-28 T 12-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 ALFP_2976 0238f505d3697522f4d470881a94f294 169 Gene3D G3DSA:1.10.150.120 84 169 4.9E-32 T 12-10-2018 ALFP_2976 0238f505d3697522f4d470881a94f294 169 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 16 63 1.1E-7 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_2976 0238f505d3697522f4d470881a94f294 169 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 48 56 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ALFP_0917 38114e67461b16ae453953a395e99a8a 138 Gene3D G3DSA:1.10.760.10 19 135 1.2E-20 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0917 38114e67461b16ae453953a395e99a8a 138 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 35 107 8.5E-17 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_0917 38114e67461b16ae453953a395e99a8a 138 PRINTS PR00605 Class IC cytochrome C signature 85 107 1.9E-6 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 ALFP_0917 38114e67461b16ae453953a395e99a8a 138 PRINTS PR00605 Class IC cytochrome C signature 43 54 1.9E-6 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 ALFP_0917 38114e67461b16ae453953a395e99a8a 138 SUPERFAMILY SSF46626 19 118 1.98E-21 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0478 17587f542b96a6f8f8f82648d74cbd22 520 SUPERFAMILY SSF53649 2 492 5.59E-115 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 ALFP_0478 17587f542b96a6f8f8f82648d74cbd22 520 Pfam PF00884 Sulfatase 5 383 8.3E-54 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 ALFP_0478 17587f542b96a6f8f8f82648d74cbd22 520 Gene3D G3DSA:3.40.720.10 4 496 3.2E-154 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 ALFP_3705 c3291cded0fb24c417c798fea13965db 1100 Pfam PF03797 Autotransporter beta-domain 821 1078 4.5E-37 T 12-10-2018 IPR005546 Autotransporter beta-domain ALFP_3705 c3291cded0fb24c417c798fea13965db 1100 SMART SM00869 817 1089 6.3E-28 T 12-10-2018 IPR005546 Autotransporter beta-domain ALFP_3705 c3291cded0fb24c417c798fea13965db 1100 SUPERFAMILY SSF51126 334 713 1.98E-5 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor ALFP_3705 c3291cded0fb24c417c798fea13965db 1100 Gene3D G3DSA:2.40.128.130 789 1100 1.7E-40 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily ALFP_3705 c3291cded0fb24c417c798fea13965db 1100 SUPERFAMILY SSF103515 789 1100 1.83E-40 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily ALFP_0141 f18ef8fa1bc6a156f4a5f99b1eca1bc7 130 Gene3D G3DSA:1.10.1660.10 1 119 6.3E-27 T 12-10-2018 ALFP_0141 f18ef8fa1bc6a156f4a5f99b1eca1bc7 130 SMART SM00422 6 73 3.0E-16 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_0141 f18ef8fa1bc6a156f4a5f99b1eca1bc7 130 Pfam PF13411 MerR HTH family regulatory protein 7 71 1.1E-13 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_0141 f18ef8fa1bc6a156f4a5f99b1eca1bc7 130 SUPERFAMILY SSF46955 6 121 8.42E-25 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily ALFP_0052 3fd56881800ff61f221fd0c47764c026 327 SUPERFAMILY SSF53850 22 321 3.2E-61 T 12-10-2018 ALFP_0052 3fd56881800ff61f221fd0c47764c026 327 Pfam PF13343 Bacterial extracellular solute-binding protein 75 307 2.2E-29 T 12-10-2018 ALFP_0052 3fd56881800ff61f221fd0c47764c026 327 Gene3D G3DSA:3.40.190.10 29 293 1.2E-69 T 12-10-2018 ALFP_0052 3fd56881800ff61f221fd0c47764c026 327 Gene3D G3DSA:3.40.190.10 126 306 1.2E-69 T 12-10-2018 ALFP_0052 3fd56881800ff61f221fd0c47764c026 327 PIRSF PIRSF002825 9 325 7.8E-80 T 12-10-2018 IPR026045 Ferric binding protein ALFP_2433 aa39e035ecb757fb72552edd33a0017e 303 Pfam PF00892 EamA-like transporter family 8 138 2.4E-6 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_2433 aa39e035ecb757fb72552edd33a0017e 303 Pfam PF00892 EamA-like transporter family 162 286 1.1E-6 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_2433 aa39e035ecb757fb72552edd33a0017e 303 SUPERFAMILY SSF103481 191 289 1.01E-5 T 12-10-2018 ALFP_2433 aa39e035ecb757fb72552edd33a0017e 303 SUPERFAMILY SSF103481 44 140 1.7E-6 T 12-10-2018 ALFP_0809 ff6b0c2eb7e8f3255be5d71a4e43bf46 621 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 10 621 20.397 T 12-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 ALFP_0809 ff6b0c2eb7e8f3255be5d71a4e43bf46 621 Pfam PF01266 FAD dependent oxidoreductase 253 600 1.1E-36 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 ALFP_0809 ff6b0c2eb7e8f3255be5d71a4e43bf46 621 Gene3D G3DSA:3.50.50.60 253 620 4.0E-75 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0809 ff6b0c2eb7e8f3255be5d71a4e43bf46 621 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 116 235 3.7E-32 T 12-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 ALFP_0809 ff6b0c2eb7e8f3255be5d71a4e43bf46 621 SUPERFAMILY SSF51905 253 609 9.32E-22 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0809 ff6b0c2eb7e8f3255be5d71a4e43bf46 621 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 254 573 4.3E-56 T 12-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 ALFP_0809 ff6b0c2eb7e8f3255be5d71a4e43bf46 621 Gene3D G3DSA:3.30.9.10 337 562 4.0E-75 T 12-10-2018 ALFP_0809 ff6b0c2eb7e8f3255be5d71a4e43bf46 621 Gene3D G3DSA:3.40.50.150 12 245 2.0E-85 T 12-10-2018 ALFP_0945 70307ae43e26c787313aebbeb9f4c124 370 SUPERFAMILY SSF51004 55 346 7.19E-33 T 12-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily ALFP_0945 70307ae43e26c787313aebbeb9f4c124 370 Gene3D G3DSA:2.130.10.10 46 365 3.0E-85 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 ALFP_0766 b8cb344c43b98f1ed51221c4c36410b3 307 Gene3D G3DSA:3.90.550.10 3 226 2.4E-35 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_0766 b8cb344c43b98f1ed51221c4c36410b3 307 SUPERFAMILY SSF53448 6 225 8.84E-38 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_0766 b8cb344c43b98f1ed51221c4c36410b3 307 Pfam PF00535 Glycosyl transferase family 2 8 113 6.4E-26 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 ALFP_3080 e61800fc5d467e8569d84d90bf1bc8a2 813 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 137 264 9.6E-33 T 12-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain ALFP_3080 e61800fc5d467e8569d84d90bf1bc8a2 813 Gene3D G3DSA:3.30.470.20 448 606 1.9E-7 T 12-10-2018 ALFP_3080 e61800fc5d467e8569d84d90bf1bc8a2 813 SUPERFAMILY SSF55729 628 791 2.62E-24 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_3080 e61800fc5d467e8569d84d90bf1bc8a2 813 Gene3D G3DSA:3.40.50.261 268 432 3.0E-30 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 ALFP_3080 e61800fc5d467e8569d84d90bf1bc8a2 813 Pfam PF13549 ATP-grasp domain 500 601 3.8E-9 T 12-10-2018 ALFP_3080 e61800fc5d467e8569d84d90bf1bc8a2 813 Gene3D G3DSA:3.40.630.30 636 812 6.9E-48 T 12-10-2018 ALFP_3080 e61800fc5d467e8569d84d90bf1bc8a2 813 SUPERFAMILY SSF52210 270 427 1.23E-23 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 ALFP_3080 e61800fc5d467e8569d84d90bf1bc8a2 813 Pfam PF13302 Acetyltransferase (GNAT) domain 643 789 1.8E-11 T 12-10-2018 IPR000182 GNAT domain ALFP_3080 e61800fc5d467e8569d84d90bf1bc8a2 813 SUPERFAMILY SSF52210 117 265 1.83E-28 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 ALFP_3080 e61800fc5d467e8569d84d90bf1bc8a2 813 Gene3D G3DSA:3.40.50.261 116 267 4.9E-36 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 ALFP_3693 9ca17ae6955f289d4ca4d3508453c851 638 SUPERFAMILY SSF51905 6 262 2.8E-50 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_3693 9ca17ae6955f289d4ca4d3508453c851 638 Gene3D G3DSA:1.10.150.570 578 631 3.7E-23 T 12-10-2018 ALFP_3693 9ca17ae6955f289d4ca4d3508453c851 638 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 633 43.175 T 12-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 ALFP_3693 9ca17ae6955f289d4ca4d3508453c851 638 Pfam PF13932 GidA associated domain 405 625 4.1E-76 T 12-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 ALFP_3693 9ca17ae6955f289d4ca4d3508453c851 638 Gene3D G3DSA:3.50.50.60 297 461 1.2E-59 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_3693 9ca17ae6955f289d4ca4d3508453c851 638 Gene3D G3DSA:3.50.50.60 2 220 6.1E-89 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_3693 9ca17ae6955f289d4ca4d3508453c851 638 SMART SM01228 555 626 1.5E-39 T 12-10-2018 ALFP_3693 9ca17ae6955f289d4ca4d3508453c851 638 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 631 1.1E-277 T 12-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 ALFP_3693 9ca17ae6955f289d4ca4d3508453c851 638 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 371 394 - T 12-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 ALFP_3693 9ca17ae6955f289d4ca4d3508453c851 638 Gene3D G3DSA:1.10.10.1800 462 559 6.0E-30 T 12-10-2018 ALFP_3693 9ca17ae6955f289d4ca4d3508453c851 638 Pfam PF01134 Glucose inhibited division protein A 8 402 1.8E-169 T 12-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 ALFP_3693 9ca17ae6955f289d4ca4d3508453c851 638 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 276 290 - T 12-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 ALFP_0804 f9022d12fbcb619438e34e233764234d 493 TIGRFAM TIGR00400 mgtE: magnesium transporter 61 492 4.1E-85 T 12-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 ALFP_0804 f9022d12fbcb619438e34e233764234d 493 SUPERFAMILY SSF158791 53 178 2.75E-25 T 12-10-2018 ALFP_0804 f9022d12fbcb619438e34e233764234d 493 SUPERFAMILY SSF161093 321 492 2.09E-41 T 12-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 ALFP_0804 f9022d12fbcb619438e34e233764234d 493 Pfam PF00571 CBS domain 181 237 4.9E-4 T 12-10-2018 IPR000644 CBS domain ALFP_0804 f9022d12fbcb619438e34e233764234d 493 Pfam PF00571 CBS domain 245 300 4.9E-6 T 12-10-2018 IPR000644 CBS domain ALFP_0804 f9022d12fbcb619438e34e233764234d 493 SUPERFAMILY SSF54631 180 315 2.44E-26 T 12-10-2018 ALFP_0804 f9022d12fbcb619438e34e233764234d 493 SMART SM00924 78 181 1.8E-32 T 12-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain ALFP_0804 f9022d12fbcb619438e34e233764234d 493 SMART SM00116 252 300 0.038 T 12-10-2018 IPR000644 CBS domain ALFP_0804 f9022d12fbcb619438e34e233764234d 493 SMART SM00116 188 241 0.39 T 12-10-2018 IPR000644 CBS domain ALFP_0804 f9022d12fbcb619438e34e233764234d 493 Pfam PF01769 Divalent cation transporter 364 485 6.0E-20 T 12-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 ALFP_0804 f9022d12fbcb619438e34e233764234d 493 Pfam PF03448 MgtE intracellular N domain 78 179 8.3E-23 T 12-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain ALFP_0804 f9022d12fbcb619438e34e233764234d 493 Gene3D G3DSA:1.10.357.20 319 492 2.1E-43 T 12-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain ALFP_0804 f9022d12fbcb619438e34e233764234d 493 Gene3D G3DSA:1.25.60.10 50 176 3.5E-17 T 12-10-2018 IPR038076 MgtE, N-terminal domain superfamily ALFP_0804 f9022d12fbcb619438e34e233764234d 493 Gene3D G3DSA:3.10.580.10 177 304 2.6E-42 T 12-10-2018 ALFP_1598 29c78dcb3c8bb39948dba33d91f2bd63 278 SMART SM00342 180 262 1.3E-19 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1598 29c78dcb3c8bb39948dba33d91f2bd63 278 SUPERFAMILY SSF46689 217 263 5.38E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1598 29c78dcb3c8bb39948dba33d91f2bd63 278 Gene3D G3DSA:2.60.120.10 11 99 1.3E-8 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_1598 29c78dcb3c8bb39948dba33d91f2bd63 278 Gene3D G3DSA:1.10.10.60 164 267 2.3E-17 T 12-10-2018 ALFP_1598 29c78dcb3c8bb39948dba33d91f2bd63 278 SUPERFAMILY SSF51182 9 185 1.16E-15 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_1598 29c78dcb3c8bb39948dba33d91f2bd63 278 Pfam PF02311 AraC-like ligand binding domain 29 143 1.3E-8 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 ALFP_1598 29c78dcb3c8bb39948dba33d91f2bd63 278 Pfam PF12833 Helix-turn-helix domain 187 263 3.9E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1598 29c78dcb3c8bb39948dba33d91f2bd63 278 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 217 258 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ALFP_0837 6c5b9187150a3cf79e3dab07bdaaff1d 401 TIGRFAM TIGR03916 rSAM_link_UDG: putative DNA modification/repair radical SAM protein 3 397 1.9E-160 T 12-10-2018 IPR023874 DNA modification/repair radical SAM protein, putative ALFP_0837 6c5b9187150a3cf79e3dab07bdaaff1d 401 SMART SM00729 56 277 0.0051 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 ALFP_0837 6c5b9187150a3cf79e3dab07bdaaff1d 401 SUPERFAMILY SSF47781 293 372 1.93E-10 T 12-10-2018 IPR010994 RuvA domain 2-like ALFP_0837 6c5b9187150a3cf79e3dab07bdaaff1d 401 Gene3D G3DSA:3.20.20.70 51 213 1.5E-9 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0837 6c5b9187150a3cf79e3dab07bdaaff1d 401 SUPERFAMILY SSF102114 43 255 1.06E-16 T 12-10-2018 ALFP_0544 62e5970073b54caa564ca5d2578a3810 147 Gene3D G3DSA:3.10.350.10 93 144 3.3E-16 T 12-10-2018 IPR036779 LysM domain superfamily ALFP_0544 62e5970073b54caa564ca5d2578a3810 147 Pfam PF04972 BON domain 22 86 4.5E-12 T 12-10-2018 IPR007055 BON domain ALFP_0544 62e5970073b54caa564ca5d2578a3810 147 SMART SM00257 94 145 3.3E-11 T 12-10-2018 IPR018392 LysM domain ALFP_0544 62e5970073b54caa564ca5d2578a3810 147 SUPERFAMILY SSF54106 93 145 1.96E-9 T 12-10-2018 ALFP_0544 62e5970073b54caa564ca5d2578a3810 147 Pfam PF01476 LysM domain 95 145 3.8E-13 T 12-10-2018 IPR018392 LysM domain ALFP_3209 14f088d2d949b111cb7034bdc1635265 518 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 5 442 9.5E-170 T 12-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 ALFP_3209 14f088d2d949b111cb7034bdc1635265 518 Pfam PF03109 ABC1 family 108 229 2.3E-34 T 12-10-2018 IPR004147 UbiB domain ALFP_3209 14f088d2d949b111cb7034bdc1635265 518 SUPERFAMILY SSF56112 90 435 6.42E-40 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily ALFP_1862 7f6827b0e5febd04257e09a48848a94b 330 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 18 146 1.0E-10 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain ALFP_1862 7f6827b0e5febd04257e09a48848a94b 330 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 201 307 3.4E-5 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain ALFP_1862 7f6827b0e5febd04257e09a48848a94b 330 SUPERFAMILY SSF54593 14 173 2.06E-26 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_1862 7f6827b0e5febd04257e09a48848a94b 330 SUPERFAMILY SSF54593 194 310 5.5E-22 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_1862 7f6827b0e5febd04257e09a48848a94b 330 Gene3D G3DSA:3.10.180.10 186 313 3.5E-24 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_1862 7f6827b0e5febd04257e09a48848a94b 330 Gene3D G3DSA:3.10.180.10 17 175 6.3E-29 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_1299 9301888cf7db80630e8cf0f8861e4369 108 Pfam PF08770 Sulphur oxidation protein SoxZ 13 101 3.8E-28 T 12-10-2018 IPR014880 Sulphur oxidation protein SoxZ ALFP_1299 9301888cf7db80630e8cf0f8861e4369 108 SUPERFAMILY SSF81296 9 104 9.38E-27 T 12-10-2018 IPR014756 Immunoglobulin E-set ALFP_1299 9301888cf7db80630e8cf0f8861e4369 108 Gene3D G3DSA:2.60.40.10 1 107 1.7E-36 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_1299 9301888cf7db80630e8cf0f8861e4369 108 TIGRFAM TIGR04490 SoxZ_true: thiosulfate oxidation carrier complex protein SoxZ 12 103 9.7E-27 T 12-10-2018 IPR030995 Thiosulfate oxidation carrier complex protein SoxZ ALFP_2852 e528dc539f49168e8fe501e77e248bd5 359 Gene3D G3DSA:3.40.50.2300 30 286 7.8E-128 T 12-10-2018 ALFP_2852 e528dc539f49168e8fe501e77e248bd5 359 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 30 290 5.4E-53 T 12-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 ALFP_2852 e528dc539f49168e8fe501e77e248bd5 359 Gene3D G3DSA:3.40.50.2300 133 348 7.8E-128 T 12-10-2018 ALFP_2121 fd629cb30523e8646752df801454b753 720 Pfam PF00912 Transglycosylase 57 219 6.8E-41 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_2121 fd629cb30523e8646752df801454b753 720 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 29 590 1.2E-179 T 12-10-2018 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_2121 fd629cb30523e8646752df801454b753 720 SUPERFAMILY SSF53955 39 215 8.15E-40 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily ALFP_2121 fd629cb30523e8646752df801454b753 720 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 627 706 4.0E-12 T 12-10-2018 IPR009647 Penicillin-binding, C-terminal KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_2121 fd629cb30523e8646752df801454b753 720 Pfam PF00905 Penicillin binding protein transpeptidase domain 306 550 4.3E-15 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 ALFP_2121 fd629cb30523e8646752df801454b753 720 SUPERFAMILY SSF56601 214 606 2.48E-82 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like ALFP_2121 fd629cb30523e8646752df801454b753 720 Gene3D G3DSA:3.40.710.10 246 618 1.7E-81 T 12-10-2018 ALFP_2121 fd629cb30523e8646752df801454b753 720 Gene3D G3DSA:1.10.3810.10 39 231 4.8E-40 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_2936 b6da4d6ac07d484c0e44fe3dcd5bd206 494 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 231 492 19.342 T 12-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 ALFP_2936 b6da4d6ac07d484c0e44fe3dcd5bd206 494 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 432 442 - T 12-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site ALFP_2936 b6da4d6ac07d484c0e44fe3dcd5bd206 494 PIRSF PIRSF017184 20 494 3.2E-106 T 12-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 ALFP_2936 b6da4d6ac07d484c0e44fe3dcd5bd206 494 SUPERFAMILY SSF53613 228 490 1.15E-64 T 12-10-2018 IPR029056 Ribokinase-like ALFP_2936 b6da4d6ac07d484c0e44fe3dcd5bd206 494 Pfam PF03853 YjeF-related protein N-terminus 42 197 1.0E-37 T 12-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 ALFP_2936 b6da4d6ac07d484c0e44fe3dcd5bd206 494 Pfam PF01256 Carbohydrate kinase 255 470 6.8E-51 T 12-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 ALFP_2936 b6da4d6ac07d484c0e44fe3dcd5bd206 494 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 238 489 3.7E-56 T 12-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 ALFP_2936 b6da4d6ac07d484c0e44fe3dcd5bd206 494 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 22 218 22.035 T 12-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 ALFP_2936 b6da4d6ac07d484c0e44fe3dcd5bd206 494 Gene3D G3DSA:3.40.50.10260 18 224 4.4E-55 T 12-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 ALFP_2936 b6da4d6ac07d484c0e44fe3dcd5bd206 494 Gene3D G3DSA:3.40.1190.20 232 493 2.5E-75 T 12-10-2018 IPR029056 Ribokinase-like ALFP_2936 b6da4d6ac07d484c0e44fe3dcd5bd206 494 SUPERFAMILY SSF64153 21 253 3.4E-55 T 12-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 ALFP_2936 b6da4d6ac07d484c0e44fe3dcd5bd206 494 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 21 218 1.1E-34 T 12-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 ALFP_2997 d41aa535c5a25989a8da63df9b6af0b6 323 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 216 244 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_2997 d41aa535c5a25989a8da63df9b6af0b6 323 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 229 248 4.2E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2997 d41aa535c5a25989a8da63df9b6af0b6 323 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 168 4.2E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2997 d41aa535c5a25989a8da63df9b6af0b6 323 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 209 217 4.2E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2997 d41aa535c5a25989a8da63df9b6af0b6 323 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 284 304 3.9E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2997 d41aa535c5a25989a8da63df9b6af0b6 323 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 229 248 3.9E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2997 d41aa535c5a25989a8da63df9b6af0b6 323 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 168 3.9E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2997 d41aa535c5a25989a8da63df9b6af0b6 323 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 250 267 3.9E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2997 d41aa535c5a25989a8da63df9b6af0b6 323 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 219 3.9E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2997 d41aa535c5a25989a8da63df9b6af0b6 323 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 99 3.9E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2997 d41aa535c5a25989a8da63df9b6af0b6 323 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 81 260 0.0015 T 12-10-2018 ALFP_2997 d41aa535c5a25989a8da63df9b6af0b6 323 SUPERFAMILY SSF51735 79 319 4.44E-76 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2997 d41aa535c5a25989a8da63df9b6af0b6 323 Gene3D G3DSA:3.40.50.720 34 320 4.7E-86 T 12-10-2018 ALFP_2997 d41aa535c5a25989a8da63df9b6af0b6 323 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 90 318 6.6E-58 T 12-10-2018 ALFP_0469 e6a811a9cc81030a26fa36c5d980bd61 378 Pfam PF01494 FAD binding domain 128 296 5.9E-10 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 ALFP_0469 e6a811a9cc81030a26fa36c5d980bd61 378 SUPERFAMILY SSF51905 1 333 2.27E-39 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0469 e6a811a9cc81030a26fa36c5d980bd61 378 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 274 290 3.3E-10 T 12-10-2018 ALFP_0469 e6a811a9cc81030a26fa36c5d980bd61 378 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 3.3E-10 T 12-10-2018 ALFP_0469 e6a811a9cc81030a26fa36c5d980bd61 378 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 129 144 3.3E-10 T 12-10-2018 ALFP_0469 e6a811a9cc81030a26fa36c5d980bd61 378 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 259 274 3.3E-10 T 12-10-2018 ALFP_0469 e6a811a9cc81030a26fa36c5d980bd61 378 Gene3D G3DSA:3.50.50.60 3 333 3.8E-110 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0469 e6a811a9cc81030a26fa36c5d980bd61 378 Gene3D G3DSA:3.30.9.20 40 248 3.8E-110 T 12-10-2018 ALFP_3579 0909f6b925272709e1d9d7a6e4c77d8f 493 Pfam PF01019 Gamma-glutamyltranspeptidase 36 305 1.5E-63 T 12-10-2018 ALFP_3579 0909f6b925272709e1d9d7a6e4c77d8f 493 Gene3D G3DSA:3.60.20.40 309 491 1.5E-46 T 12-10-2018 ALFP_3579 0909f6b925272709e1d9d7a6e4c77d8f 493 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 43 68 7.7E-30 T 12-10-2018 ALFP_3579 0909f6b925272709e1d9d7a6e4c77d8f 493 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 131 150 7.7E-30 T 12-10-2018 ALFP_3579 0909f6b925272709e1d9d7a6e4c77d8f 493 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 363 378 7.7E-30 T 12-10-2018 ALFP_3579 0909f6b925272709e1d9d7a6e4c77d8f 493 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 113 131 7.7E-30 T 12-10-2018 ALFP_3579 0909f6b925272709e1d9d7a6e4c77d8f 493 SUPERFAMILY SSF56235 17 491 2.12E-120 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 Pfam PF13180 PDZ domain 435 493 6.5E-7 T 12-10-2018 IPR001478 PDZ domain GO:0005515 ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 Pfam PF13180 PDZ domain 296 387 1.0E-18 T 12-10-2018 IPR001478 PDZ domain GO:0005515 ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 SUPERFAMILY SSF50494 48 288 2.37E-64 T 12-10-2018 IPR009003 Peptidase S1, PA clan ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 SUPERFAMILY SSF50156 254 379 9.86E-25 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 Gene3D G3DSA:2.30.42.10 291 394 5.4E-28 T 12-10-2018 ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 SUPERFAMILY SSF50156 439 499 3.42E-13 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 51 495 1.3E-145 T 12-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 Pfam PF13365 Trypsin-like peptidase domain 126 257 1.4E-35 T 12-10-2018 ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 Gene3D G3DSA:2.40.10.120 49 289 1.5E-78 T 12-10-2018 ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 SMART SM00228 296 378 1.2E-13 T 12-10-2018 IPR001478 PDZ domain GO:0005515 ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 SMART SM00228 412 490 6.9E-5 T 12-10-2018 IPR001478 PDZ domain GO:0005515 ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 PRINTS PR00834 HtrA/DegQ protease family signature 156 176 4.2E-53 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 PRINTS PR00834 HtrA/DegQ protease family signature 250 267 4.2E-53 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 PRINTS PR00834 HtrA/DegQ protease family signature 135 147 4.2E-53 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 PRINTS PR00834 HtrA/DegQ protease family signature 336 348 4.2E-53 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 PRINTS PR00834 HtrA/DegQ protease family signature 196 220 4.2E-53 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 PRINTS PR00834 HtrA/DegQ protease family signature 228 245 4.2E-53 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ALFP_2521 b35f2eefa239872b8b5956d42251efa4 501 Gene3D G3DSA:2.30.42.10 395 498 5.0E-13 T 12-10-2018 ALFP_2781 6835fccf0aeae4bfe9b3b3fbb3b97411 358 Gene3D G3DSA:3.10.180.10 2 154 1.2E-52 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_2781 6835fccf0aeae4bfe9b3b3fbb3b97411 358 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 5 142 7.1E-70 T 12-10-2018 ALFP_2781 6835fccf0aeae4bfe9b3b3fbb3b97411 358 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 12 355 7.0E-123 T 12-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 ALFP_2781 6835fccf0aeae4bfe9b3b3fbb3b97411 358 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 160 277 2.7E-18 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain ALFP_2781 6835fccf0aeae4bfe9b3b3fbb3b97411 358 PIRSF PIRSF009283 1 356 1.3E-115 T 12-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 ALFP_2781 6835fccf0aeae4bfe9b3b3fbb3b97411 358 Gene3D G3DSA:3.10.180.10 155 356 2.5E-68 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_2781 6835fccf0aeae4bfe9b3b3fbb3b97411 358 SUPERFAMILY SSF54593 5 342 2.65E-83 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_0234 0c5d342378ab88b9fa091336c4d80055 172 Gene3D G3DSA:3.90.45.10 1 168 2.3E-63 T 12-10-2018 IPR036821 Peptide deformylase superfamily ALFP_0234 0c5d342378ab88b9fa091336c4d80055 172 Pfam PF01327 Polypeptide deformylase 5 152 1.1E-49 T 12-10-2018 IPR023635 Peptide deformylase ALFP_0234 0c5d342378ab88b9fa091336c4d80055 172 SUPERFAMILY SSF56420 2 165 1.16E-60 T 12-10-2018 IPR036821 Peptide deformylase superfamily ALFP_0234 0c5d342378ab88b9fa091336c4d80055 172 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 159 3.3E-53 T 12-10-2018 IPR023635 Peptide deformylase ALFP_0234 0c5d342378ab88b9fa091336c4d80055 172 Hamap MF_00163 Peptide deformylase [def]. 2 163 30.046 T 12-10-2018 IPR023635 Peptide deformylase ALFP_0234 0c5d342378ab88b9fa091336c4d80055 172 PIRSF PIRSF004749 1 172 9.4E-55 T 12-10-2018 IPR023635 Peptide deformylase ALFP_0234 0c5d342378ab88b9fa091336c4d80055 172 PRINTS PR01576 Peptide deformylase signature 90 101 3.5E-33 T 12-10-2018 IPR023635 Peptide deformylase ALFP_0234 0c5d342378ab88b9fa091336c4d80055 172 PRINTS PR01576 Peptide deformylase signature 121 150 3.5E-33 T 12-10-2018 IPR023635 Peptide deformylase ALFP_0234 0c5d342378ab88b9fa091336c4d80055 172 PRINTS PR01576 Peptide deformylase signature 33 62 3.5E-33 T 12-10-2018 IPR023635 Peptide deformylase ALFP_0234 0c5d342378ab88b9fa091336c4d80055 172 PRINTS PR01576 Peptide deformylase signature 102 120 3.5E-33 T 12-10-2018 IPR023635 Peptide deformylase ALFP_2074 4d6e513a520584acbf839875becd3f7a 353 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 35.362 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 ALFP_2074 4d6e513a520584acbf839875becd3f7a 353 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 12-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 ALFP_2074 4d6e513a520584acbf839875becd3f7a 353 Gene3D G3DSA:3.60.150.10 1 352 5.7E-143 T 12-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 ALFP_2074 4d6e513a520584acbf839875becd3f7a 353 PIRSF PIRSF001456 3 352 1.9E-130 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 ALFP_2074 4d6e513a520584acbf839875becd3f7a 353 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 12-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 ALFP_2074 4d6e513a520584acbf839875becd3f7a 353 SUPERFAMILY SSF103263 4 351 1.83E-140 T 12-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 ALFP_2074 4d6e513a520584acbf839875becd3f7a 353 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 12-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 ALFP_2074 4d6e513a520584acbf839875becd3f7a 353 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 3.7E-132 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 ALFP_2074 4d6e513a520584acbf839875becd3f7a 353 Pfam PF01264 Chorismate synthase 10 345 1.9E-130 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 ALFP_2893 a40babf354186f82eb8137112a818798 320 Gene3D G3DSA:3.30.1330.10 1 142 3.7E-46 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily ALFP_2893 a40babf354186f82eb8137112a818798 320 PIRSF PIRSF005303 2 318 5.8E-73 T 12-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 ALFP_2893 a40babf354186f82eb8137112a818798 320 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 2 318 25.019 T 12-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 ALFP_2893 a40babf354186f82eb8137112a818798 320 Pfam PF02769 AIR synthase related protein, C-terminal domain 148 301 1.1E-8 T 12-10-2018 IPR010918 PurM-like, C-terminal domain ALFP_2893 a40babf354186f82eb8137112a818798 320 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 4 318 8.1E-91 T 12-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 ALFP_2893 a40babf354186f82eb8137112a818798 320 SUPERFAMILY SSF55326 4 136 2.62E-34 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily ALFP_2893 a40babf354186f82eb8137112a818798 320 Pfam PF00586 AIR synthase related protein, N-terminal domain 25 136 7.0E-24 T 12-10-2018 IPR016188 PurM-like, N-terminal domain ALFP_2893 a40babf354186f82eb8137112a818798 320 SUPERFAMILY SSF56042 141 302 6.73E-32 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily ALFP_2893 a40babf354186f82eb8137112a818798 320 Gene3D G3DSA:3.90.650.10 143 319 2.3E-48 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily ALFP_0005 7aca4247e3be41f2ab7b253082cd506e 155 Gene3D G3DSA:3.40.630.30 4 154 1.6E-34 T 12-10-2018 ALFP_0005 7aca4247e3be41f2ab7b253082cd506e 155 Pfam PF00583 Acetyltransferase (GNAT) family 30 143 1.2E-19 T 12-10-2018 IPR000182 GNAT domain ALFP_0005 7aca4247e3be41f2ab7b253082cd506e 155 SUPERFAMILY SSF55729 1 145 2.83E-30 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_3312 30858f8153e03c699ec705462396d4b3 512 Pfam PF08479 POTRA domain, ShlB-type 20 93 4.7E-14 T 12-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type ALFP_3312 30858f8153e03c699ec705462396d4b3 512 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 156 474 1.8E-23 T 12-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal ALFP_3312 30858f8153e03c699ec705462396d4b3 512 Gene3D G3DSA:2.40.160.50 128 512 2.5E-71 T 12-10-2018 ALFP_3312 30858f8153e03c699ec705462396d4b3 512 Gene3D G3DSA:3.10.20.310 9 94 1.8E-12 T 12-10-2018 ALFP_1199 cf35a2967577714a9711d267202152d8 96 Pfam PF04316 Anti-sigma-28 factor, FlgM 39 88 7.6E-13 T 12-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal ALFP_1199 cf35a2967577714a9711d267202152d8 96 SUPERFAMILY SSF101498 19 91 1.83E-14 T 12-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily ALFP_1199 cf35a2967577714a9711d267202152d8 96 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 4 91 2.2E-18 T 12-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 ALFP_2384 541b71b586156dc6e38901d5e6ce90e2 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 297 326 1.7E-38 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_2384 541b71b586156dc6e38901d5e6ce90e2 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 451 480 1.7E-38 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_2384 541b71b586156dc6e38901d5e6ce90e2 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 403 432 1.7E-38 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_2384 541b71b586156dc6e38901d5e6ce90e2 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 374 401 1.7E-38 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_2384 541b71b586156dc6e38901d5e6ce90e2 568 Pfam PF08447 PAS fold 30 113 2.0E-15 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 ALFP_2384 541b71b586156dc6e38901d5e6ce90e2 568 SMART SM00283 276 523 6.3E-65 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 ALFP_2384 541b71b586156dc6e38901d5e6ce90e2 568 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 114 3.8E-16 T 12-10-2018 IPR000014 PAS domain ALFP_2384 541b71b586156dc6e38901d5e6ce90e2 568 SUPERFAMILY SSF55785 20 114 1.92E-28 T 12-10-2018 IPR035965 PAS domain superfamily ALFP_2384 541b71b586156dc6e38901d5e6ce90e2 568 Gene3D G3DSA:1.10.287.950 224 523 6.0E-65 T 12-10-2018 ALFP_2384 541b71b586156dc6e38901d5e6ce90e2 568 Gene3D G3DSA:3.30.450.20 16 154 5.3E-27 T 12-10-2018 ALFP_2384 541b71b586156dc6e38901d5e6ce90e2 568 SUPERFAMILY SSF58104 245 524 2.49E-56 T 12-10-2018 ALFP_2384 541b71b586156dc6e38901d5e6ce90e2 568 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 335 491 3.5E-41 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 ALFP_3553 53d39f5b26369b28c104989823412741 396 Pfam PF07690 Major Facilitator Superfamily 24 356 2.4E-35 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_3553 53d39f5b26369b28c104989823412741 396 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 14 389 2.1E-88 T 12-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 ALFP_3553 53d39f5b26369b28c104989823412741 396 SUPERFAMILY SSF103473 12 394 3.27E-48 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_3553 53d39f5b26369b28c104989823412741 396 Gene3D G3DSA:1.20.1720.10 15 391 3.7E-76 T 12-10-2018 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 Gene3D G3DSA:3.40.228.10 377 584 7.1E-177 T 12-10-2018 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 Gene3D G3DSA:2.20.25.90 241 293 8.2E-18 T 12-10-2018 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 242 292 4.8E-16 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 21 97 1.5E-20 T 12-10-2018 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 Gene3D G3DSA:3.30.70.20 149 231 3.3E-23 T 12-10-2018 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 SMART SM00926 240 294 4.8E-17 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 SUPERFAMILY SSF54862 97 236 1.72E-37 T 12-10-2018 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 SUPERFAMILY SSF50692 781 923 1.51E-40 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 213 224 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 Pfam PF01568 Molydopterin dinucleotide binding domain 813 917 2.1E-26 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 Gene3D G3DSA:2.40.40.20 800 931 6.6E-35 T 12-10-2018 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 Gene3D G3DSA:3.40.50.740 302 772 7.1E-177 T 12-10-2018 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 SUPERFAMILY SSF53706 241 762 1.7E-195 T 12-10-2018 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 Pfam PF12838 4Fe-4S dicluster domain 169 225 7.2E-7 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 Pfam PF00384 Molybdopterin oxidoreductase 297 728 3.2E-74 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 PIRSF PIRSF036643 18 953 0.0 T 12-10-2018 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 104 143 5.3E-17 T 12-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 245 921 4.8E-287 T 12-10-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.17.1.9|KEGG: 00680+1.17.1.9|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696|MetaCyc: PWY-7985 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 SMART SM00929 104 144 1.2E-18 T 12-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 Gene3D G3DSA:3.10.20.740 22 143 4.9E-38 T 12-10-2018 ALFP_0669 8e2d6f691d9e162c2e9c3ad59723f0e7 973 SUPERFAMILY SSF54292 22 95 4.22E-18 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_0406 a3436ff0010d1fe2654753998e532cdb 163 Gene3D G3DSA:3.30.1490.190 95 154 1.2E-13 T 12-10-2018 ALFP_0406 a3436ff0010d1fe2654753998e532cdb 163 Pfam PF01475 Ferric uptake regulator family 25 143 9.7E-15 T 12-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 ALFP_0406 a3436ff0010d1fe2654753998e532cdb 163 SUPERFAMILY SSF46785 18 148 4.38E-31 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0406 a3436ff0010d1fe2654753998e532cdb 163 Gene3D G3DSA:1.10.10.10 7 94 7.6E-31 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3559 af94832f16d5f791644f27e357346d02 294 Gene3D G3DSA:3.40.190.10 162 261 4.1E-60 T 12-10-2018 ALFP_3559 af94832f16d5f791644f27e357346d02 294 SUPERFAMILY SSF46785 4 113 2.34E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3559 af94832f16d5f791644f27e357346d02 294 Gene3D G3DSA:3.40.190.10 102 288 4.1E-60 T 12-10-2018 ALFP_3559 af94832f16d5f791644f27e357346d02 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.5E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3559 af94832f16d5f791644f27e357346d02 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.5E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3559 af94832f16d5f791644f27e357346d02 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.5E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3559 af94832f16d5f791644f27e357346d02 294 Gene3D G3DSA:1.10.10.10 5 95 2.0E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3559 af94832f16d5f791644f27e357346d02 294 SUPERFAMILY SSF53850 92 293 3.16E-42 T 12-10-2018 ALFP_3559 af94832f16d5f791644f27e357346d02 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 8.1E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3559 af94832f16d5f791644f27e357346d02 294 Pfam PF03466 LysR substrate binding domain 91 292 4.2E-39 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_3132 5a36632cec649f4762ad736ab330e62e 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 3.4E-40 T 12-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3132 5a36632cec649f4762ad736ab330e62e 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 12-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3132 5a36632cec649f4762ad736ab330e62e 103 SUPERFAMILY SSF141091 1 102 4.19E-38 T 12-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3132 5a36632cec649f4762ad736ab330e62e 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.066 T 12-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3132 5a36632cec649f4762ad736ab330e62e 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 1.7E-36 T 12-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2118 43b9adea623f44f9ef783cbd22e44bf1 431 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 242 397 2.3E-29 T 12-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 ALFP_2118 43b9adea623f44f9ef783cbd22e44bf1 431 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 134 153 1.6E-19 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ALFP_2118 43b9adea623f44f9ef783cbd22e44bf1 431 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 349 358 1.6E-19 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ALFP_2118 43b9adea623f44f9ef783cbd22e44bf1 431 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 364 387 1.6E-19 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ALFP_2118 43b9adea623f44f9ef783cbd22e44bf1 431 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 218 229 1.6E-19 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ALFP_2118 43b9adea623f44f9ef783cbd22e44bf1 431 Gene3D G3DSA:3.40.50.1370 91 395 1.1E-100 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 ALFP_2118 43b9adea623f44f9ef783cbd22e44bf1 431 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 90 230 3.6E-42 T 12-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 ALFP_2118 43b9adea623f44f9ef783cbd22e44bf1 431 SUPERFAMILY SSF53671 90 400 1.31E-87 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 ALFP_2118 43b9adea623f44f9ef783cbd22e44bf1 431 PRINTS PR00101 Aspartate carbamoyltransferase signature 163 172 1.0E-29 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 ALFP_2118 43b9adea623f44f9ef783cbd22e44bf1 431 PRINTS PR00101 Aspartate carbamoyltransferase signature 124 146 1.0E-29 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 ALFP_2118 43b9adea623f44f9ef783cbd22e44bf1 431 PRINTS PR00101 Aspartate carbamoyltransferase signature 380 394 1.0E-29 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 ALFP_2118 43b9adea623f44f9ef783cbd22e44bf1 431 PRINTS PR00101 Aspartate carbamoyltransferase signature 314 323 1.0E-29 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 ALFP_2118 43b9adea623f44f9ef783cbd22e44bf1 431 PRINTS PR00101 Aspartate carbamoyltransferase signature 217 234 1.0E-29 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 ALFP_2118 43b9adea623f44f9ef783cbd22e44bf1 431 Gene3D G3DSA:3.40.50.1370 218 386 1.1E-100 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 ALFP_2118 43b9adea623f44f9ef783cbd22e44bf1 431 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 134 141 - T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ALFP_2118 43b9adea623f44f9ef783cbd22e44bf1 431 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 90 399 1.7E-88 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 ALFP_2490 284f973196811a84948fa6d218a1bd75 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 7.3E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2490 284f973196811a84948fa6d218a1bd75 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 7.3E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2490 284f973196811a84948fa6d218a1bd75 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 7.3E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2490 284f973196811a84948fa6d218a1bd75 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 7.3E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2490 284f973196811a84948fa6d218a1bd75 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 7.3E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2490 284f973196811a84948fa6d218a1bd75 241 SUPERFAMILY SSF51735 3 213 1.12E-31 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2490 284f973196811a84948fa6d218a1bd75 241 Pfam PF00106 short chain dehydrogenase 3 188 2.2E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2490 284f973196811a84948fa6d218a1bd75 241 Gene3D G3DSA:3.40.50.720 2 224 3.7E-34 T 12-10-2018 ALFP_2430 e7d99b509b90ff976a6b5374f8c20547 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 226 262 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_2430 e7d99b509b90ff976a6b5374f8c20547 426 SUPERFAMILY SSF53383 4 406 1.41E-103 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2430 e7d99b509b90ff976a6b5374f8c20547 426 PIRSF PIRSF000521 115 151 0.22 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_2430 e7d99b509b90ff976a6b5374f8c20547 426 PIRSF PIRSF000521 169 409 2.8E-32 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_2430 e7d99b509b90ff976a6b5374f8c20547 426 PIRSF PIRSF000521 3 122 5.4E-6 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_2430 e7d99b509b90ff976a6b5374f8c20547 426 Gene3D G3DSA:3.90.1150.10 3 402 7.8E-108 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_2430 e7d99b509b90ff976a6b5374f8c20547 426 Gene3D G3DSA:3.40.640.10 48 309 7.8E-108 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2430 e7d99b509b90ff976a6b5374f8c20547 426 Pfam PF00202 Aminotransferase class-III 11 404 1.5E-80 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_2430 e7d99b509b90ff976a6b5374f8c20547 426 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 1 411 1.1E-141 T 12-10-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 ALFP_2430 e7d99b509b90ff976a6b5374f8c20547 426 TIGRFAM TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase 1 407 9.8E-197 T 12-10-2018 IPR012773 Ectoine biosynthetic protein GO:0019491|GO:0030170|GO:0047307 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 ALFP_3538 21618e4c90a4a39dddd784c3305e7ccd 325 Gene3D G3DSA:1.10.357.140 58 204 4.1E-40 T 12-10-2018 ALFP_3538 21618e4c90a4a39dddd784c3305e7ccd 325 Pfam PF01040 UbiA prenyltransferase family 63 308 2.9E-50 T 12-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 ALFP_3538 21618e4c90a4a39dddd784c3305e7ccd 325 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 39 322 25.284 T 12-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 ALFP_3538 21618e4c90a4a39dddd784c3305e7ccd 325 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 101 123 - T 12-10-2018 IPR030470 UbiA prenyltransferase conserved site ALFP_3538 21618e4c90a4a39dddd784c3305e7ccd 325 Gene3D G3DSA:1.20.120.1780 205 324 1.9E-15 T 12-10-2018 ALFP_3538 21618e4c90a4a39dddd784c3305e7ccd 325 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 44 320 3.4E-89 T 12-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 ALFP_1073 efcc634eae3341dce41e73f975a747e2 609 SMART SM00363 147 207 5.9E-8 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_1073 efcc634eae3341dce41e73f975a747e2 609 SUPERFAMILY SSF55120 209 374 3.84E-41 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_1073 efcc634eae3341dce41e73f975a747e2 609 Gene3D G3DSA:3.30.70.1560 272 362 1.6E-48 T 12-10-2018 ALFP_1073 efcc634eae3341dce41e73f975a747e2 609 SUPERFAMILY SSF55174 148 236 4.24E-15 T 12-10-2018 ALFP_1073 efcc634eae3341dce41e73f975a747e2 609 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 214 374 4.9E-53 T 12-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 ALFP_1073 efcc634eae3341dce41e73f975a747e2 609 Pfam PF00849 RNA pseudouridylate synthase 210 343 6.6E-16 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_1073 efcc634eae3341dce41e73f975a747e2 609 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 248 262 - T 12-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 ALFP_1073 efcc634eae3341dce41e73f975a747e2 609 Gene3D G3DSA:3.30.70.580 211 370 1.6E-48 T 12-10-2018 ALFP_1073 efcc634eae3341dce41e73f975a747e2 609 Gene3D G3DSA:3.10.290.10 146 201 1.7E-19 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 ALFP_1073 efcc634eae3341dce41e73f975a747e2 609 Pfam PF01479 S4 domain 149 192 3.1E-8 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_2079 754561ecb7483e62c6829e1a51c9ec55 330 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 6 328 44.852 T 12-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 ALFP_2079 754561ecb7483e62c6829e1a51c9ec55 330 Gene3D G3DSA:1.20.120.1460 258 324 4.1E-11 T 12-10-2018 ALFP_2079 754561ecb7483e62c6829e1a51c9ec55 330 Gene3D G3DSA:3.20.20.70 12 252 9.1E-67 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_2079 754561ecb7483e62c6829e1a51c9ec55 330 Pfam PF01207 Dihydrouridine synthase (Dus) 16 313 4.6E-71 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 ALFP_2079 754561ecb7483e62c6829e1a51c9ec55 330 SUPERFAMILY SSF51395 13 309 2.16E-64 T 12-10-2018 ALFP_2079 754561ecb7483e62c6829e1a51c9ec55 330 PIRSF PIRSF006621 5 312 4.7E-68 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 ALFP_2079 754561ecb7483e62c6829e1a51c9ec55 330 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 95 113 - T 12-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 ALFP_2958 555d33594dcd5759c9091306e5726c4e 338 SUPERFAMILY SSF81345 7 333 8.76E-76 T 12-10-2018 IPR037294 ABC transporter, BtuC-like ALFP_2958 555d33594dcd5759c9091306e5726c4e 338 Gene3D G3DSA:1.10.3470.10 4 338 1.0E-97 T 12-10-2018 IPR037294 ABC transporter, BtuC-like ALFP_2958 555d33594dcd5759c9091306e5726c4e 338 Pfam PF01032 FecCD transport family 17 333 2.7E-85 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 ALFP_1164 29e2b362788b3e154db9864f45da3d61 301 Gene3D G3DSA:1.10.10.10 3 92 1.0E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1164 29e2b362788b3e154db9864f45da3d61 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 3.4E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1164 29e2b362788b3e154db9864f45da3d61 301 SUPERFAMILY SSF53850 89 291 1.41E-46 T 12-10-2018 ALFP_1164 29e2b362788b3e154db9864f45da3d61 301 SUPERFAMILY SSF46785 4 111 1.53E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1164 29e2b362788b3e154db9864f45da3d61 301 Gene3D G3DSA:3.40.190.290 93 294 7.9E-45 T 12-10-2018 ALFP_1164 29e2b362788b3e154db9864f45da3d61 301 Pfam PF03466 LysR substrate binding domain 88 290 2.5E-47 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1164 29e2b362788b3e154db9864f45da3d61 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 9.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1164 29e2b362788b3e154db9864f45da3d61 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 9.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1164 29e2b362788b3e154db9864f45da3d61 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 9.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1919 032a0aa471d4ffa3b1dc28366893d695 193 SUPERFAMILY SSF52833 2 191 6.94E-23 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_1919 032a0aa471d4ffa3b1dc28366893d695 193 Gene3D G3DSA:3.40.30.10 1 189 1.3E-29 T 12-10-2018 ALFP_1919 032a0aa471d4ffa3b1dc28366893d695 193 Pfam PF13743 Thioredoxin 55 170 3.8E-11 T 12-10-2018 ALFP_3386 17d73db0e22e24d2cfd3202510b1d804 385 Pfam PF02563 Polysaccharide biosynthesis/export protein 76 169 2.4E-20 T 12-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 ALFP_3386 17d73db0e22e24d2cfd3202510b1d804 385 Gene3D G3DSA:3.30.1950.10 82 173 3.6E-72 T 12-10-2018 ALFP_3386 17d73db0e22e24d2cfd3202510b1d804 385 Gene3D G3DSA:3.10.560.10 61 255 3.6E-72 T 12-10-2018 ALFP_3386 17d73db0e22e24d2cfd3202510b1d804 385 Gene3D G3DSA:3.10.560.10 49 355 3.6E-72 T 12-10-2018 ALFP_3436 b7f2d72d3f3200099a472f94937dd02d 117 Gene3D G3DSA:1.10.287.1080 6 102 4.3E-27 T 12-10-2018 ALFP_3436 b7f2d72d3f3200099a472f94937dd02d 117 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 11 97 6.7E-28 T 12-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 ALFP_3436 b7f2d72d3f3200099a472f94937dd02d 117 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 28 100 5.2E-14 T 12-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 ALFP_3436 b7f2d72d3f3200099a472f94937dd02d 117 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 8 97 20.982 T 12-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 ALFP_3436 b7f2d72d3f3200099a472f94937dd02d 117 SUPERFAMILY SSF101386 11 102 9.53E-23 T 12-10-2018 ALFP_0947 abd2dda95eb5a414aed0a000762d41d7 392 Gene3D G3DSA:2.40.50.100 58 220 5.4E-83 T 12-10-2018 ALFP_0947 abd2dda95eb5a414aed0a000762d41d7 392 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 35 379 2.8E-50 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 ALFP_0947 abd2dda95eb5a414aed0a000762d41d7 392 Gene3D G3DSA:2.40.30.170 47 315 5.4E-83 T 12-10-2018 ALFP_0947 abd2dda95eb5a414aed0a000762d41d7 392 Gene3D G3DSA:2.40.420.20 43 377 5.4E-83 T 12-10-2018 ALFP_0947 abd2dda95eb5a414aed0a000762d41d7 392 SUPERFAMILY SSF111369 48 311 1.15E-21 T 12-10-2018 ALFP_0947 abd2dda95eb5a414aed0a000762d41d7 392 Gene3D G3DSA:1.10.287.470 92 183 5.4E-83 T 12-10-2018 ALFP_0947 abd2dda95eb5a414aed0a000762d41d7 392 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 45 308 7.0E-16 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain ALFP_2835 0096aebe5afff5cc8052483a7f900ad0 345 Pfam PF13343 Bacterial extracellular solute-binding protein 104 309 2.3E-18 T 12-10-2018 ALFP_2835 0096aebe5afff5cc8052483a7f900ad0 345 Gene3D G3DSA:3.40.190.10 54 308 1.1E-39 T 12-10-2018 ALFP_2835 0096aebe5afff5cc8052483a7f900ad0 345 Gene3D G3DSA:3.40.190.10 144 259 1.1E-39 T 12-10-2018 ALFP_2835 0096aebe5afff5cc8052483a7f900ad0 345 SUPERFAMILY SSF53850 49 315 3.61E-42 T 12-10-2018 ALFP_3117 9674307bd9db2dd9d0d54edac24a4009 143 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 17 138 3.4E-30 T 12-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 ALFP_3117 9674307bd9db2dd9d0d54edac24a4009 143 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 14 141 21.031 T 12-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 ALFP_3117 9674307bd9db2dd9d0d54edac24a4009 143 Gene3D G3DSA:3.30.420.140 12 140 7.3E-36 T 12-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 ALFP_3117 9674307bd9db2dd9d0d54edac24a4009 143 SUPERFAMILY SSF53098 14 140 1.15E-34 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily ALFP_3117 9674307bd9db2dd9d0d54edac24a4009 143 Pfam PF03652 Holliday junction resolvase 15 139 1.7E-34 T 12-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 ALFP_3117 9674307bd9db2dd9d0d54edac24a4009 143 SMART SM00732 14 114 9.8E-28 T 12-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 ALFP_0485 2a33bb2315b32d05addb82f605d4bd7f 334 SUPERFAMILY SSF53807 45 316 1.41E-61 T 12-10-2018 ALFP_0485 2a33bb2315b32d05addb82f605d4bd7f 334 Gene3D G3DSA:3.40.50.12260 202 305 1.8E-80 T 12-10-2018 ALFP_0485 2a33bb2315b32d05addb82f605d4bd7f 334 Pfam PF01497 Periplasmic binding protein 69 307 5.4E-32 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain ALFP_0485 2a33bb2315b32d05addb82f605d4bd7f 334 Gene3D G3DSA:3.40.50.12250 53 312 1.8E-80 T 12-10-2018 ALFP_0300 30b4988811b59006ddc20cb6cc64e174 261 Gene3D G3DSA:1.10.3720.10 53 249 2.9E-22 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0300 30b4988811b59006ddc20cb6cc64e174 261 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 247 4.5E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0300 30b4988811b59006ddc20cb6cc64e174 261 SUPERFAMILY SSF161098 53 238 3.01E-26 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1202 1572f4ead77051373daf2bb9d840f06f 134 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 87 130 2.1E-10 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain ALFP_1202 1572f4ead77051373daf2bb9d840f06f 134 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site ALFP_1202 1572f4ead77051373daf2bb9d840f06f 134 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 134 1.1E-48 T 12-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 ALFP_1202 1572f4ead77051373daf2bb9d840f06f 134 Pfam PF00460 Flagella basal body rod protein 7 37 1.1E-9 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 ALFP_1332 8624c88bd9401734e144d504afb61d43 568 PIRSF PIRSF500060 11 531 1.9E-237 T 12-10-2018 IPR027283 Glutamate synthase large subunit-like protein, bacteria ALFP_1332 8624c88bd9401734e144d504afb61d43 568 PIRSF PIRSF006429 6 537 7.7E-165 T 12-10-2018 IPR024188 Glutamate synthase large subunit-like protein ALFP_1332 8624c88bd9401734e144d504afb61d43 568 Gene3D G3DSA:3.20.20.70 102 502 2.1E-109 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_1332 8624c88bd9401734e144d504afb61d43 568 SUPERFAMILY SSF51395 12 502 8.37E-142 T 12-10-2018 ALFP_1332 8624c88bd9401734e144d504afb61d43 568 Pfam PF01645 Conserved region in glutamate synthase 159 474 1.7E-85 T 12-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 ALFP_1997 f386e4c9d4b52e4e71f5162597971c32 487 Gene3D G3DSA:1.20.1600.10 56 468 9.7E-132 T 12-10-2018 ALFP_1997 f386e4c9d4b52e4e71f5162597971c32 487 SUPERFAMILY SSF56954 3 469 5.75E-111 T 12-10-2018 ALFP_1997 f386e4c9d4b52e4e71f5162597971c32 487 Gene3D G3DSA:2.20.200.10 102 357 9.7E-132 T 12-10-2018 ALFP_1997 f386e4c9d4b52e4e71f5162597971c32 487 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 13 467 9.6E-117 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 ALFP_1997 f386e4c9d4b52e4e71f5162597971c32 487 Pfam PF02321 Outer membrane efflux protein 66 257 4.8E-29 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_1997 f386e4c9d4b52e4e71f5162597971c32 487 Pfam PF02321 Outer membrane efflux protein 285 465 6.0E-26 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_1070 6a4e145d40e78e69d1da77b056698ecd 408 SUPERFAMILY SSF55729 207 378 1.43E-31 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_1070 6a4e145d40e78e69d1da77b056698ecd 408 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 43 404 1.3E-147 T 12-10-2018 IPR007434 Peptidogalycan biosysnthesis/recognition ALFP_1070 6a4e145d40e78e69d1da77b056698ecd 408 Gene3D G3DSA:3.40.630.30 207 355 1.7E-6 T 12-10-2018 ALFP_1608 a16669720f868c96bd07cbc0b4cfc75a 91 SUPERFAMILY SSF54909 1 91 2.49E-38 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel ALFP_1608 a16669720f868c96bd07cbc0b4cfc75a 91 Pfam PF02426 Muconolactone delta-isomerase 1 89 2.3E-41 T 12-10-2018 IPR026029 Muconolactone isomerase domain KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 ALFP_1608 a16669720f868c96bd07cbc0b4cfc75a 91 Gene3D G3DSA:3.30.70.1060 1 91 3.6E-36 T 12-10-2018 ALFP_1608 a16669720f868c96bd07cbc0b4cfc75a 91 TIGRFAM TIGR03221 muco_delta: muconolactone delta-isomerase 2 91 1.7E-46 T 12-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 ALFP_1608 a16669720f868c96bd07cbc0b4cfc75a 91 ProDom PD006619 ISOMERASE MUCONOLACTONE DELTA-ISOMERASE HYDROCARBONS MIASE AROMATIC CATABOLISM METHYLMUCONOLACTONE DIRECT SEQUENCING 1 57 2.0E-13 T 12-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 ALFP_1608 a16669720f868c96bd07cbc0b4cfc75a 91 PIRSF PIRSF001486 1 91 1.4E-46 T 12-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 ALFP_1899 978ac13088f566d938be8b05bfe158fd 262 Gene3D G3DSA:3.40.50.720 2 261 1.2E-71 T 12-10-2018 ALFP_1899 978ac13088f566d938be8b05bfe158fd 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 23 259 1.8E-52 T 12-10-2018 ALFP_1899 978ac13088f566d938be8b05bfe158fd 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 8.6E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1899 978ac13088f566d938be8b05bfe158fd 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 8.6E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1899 978ac13088f566d938be8b05bfe158fd 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 8.6E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1899 978ac13088f566d938be8b05bfe158fd 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 8.6E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1899 978ac13088f566d938be8b05bfe158fd 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 8.6E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1899 978ac13088f566d938be8b05bfe158fd 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 8.6E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1899 978ac13088f566d938be8b05bfe158fd 262 SUPERFAMILY SSF51735 11 260 3.29E-69 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1899 978ac13088f566d938be8b05bfe158fd 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 153 181 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_1899 978ac13088f566d938be8b05bfe158fd 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 7.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1899 978ac13088f566d938be8b05bfe158fd 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 7.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1899 978ac13088f566d938be8b05bfe158fd 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 7.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1903 a39f577038b77219628fc77eb2fdd923 262 Pfam PF08241 Methyltransferase domain 65 159 2.5E-15 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 ALFP_1903 a39f577038b77219628fc77eb2fdd923 262 Gene3D G3DSA:3.40.50.150 29 221 2.0E-23 T 12-10-2018 ALFP_1903 a39f577038b77219628fc77eb2fdd923 262 SUPERFAMILY SSF53335 49 233 2.6E-28 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_1415 e0226ca6228786cfd69c22c608b70d2d 81 PRINTS PR00050 Cold shock protein signature 54 72 3.3E-16 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ALFP_1415 e0226ca6228786cfd69c22c608b70d2d 81 PRINTS PR00050 Cold shock protein signature 39 48 3.3E-16 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ALFP_1415 e0226ca6228786cfd69c22c608b70d2d 81 PRINTS PR00050 Cold shock protein signature 18 33 3.3E-16 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ALFP_1415 e0226ca6228786cfd69c22c608b70d2d 81 PIRSF PIRSF002599 11 81 1.1E-23 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 ALFP_1415 e0226ca6228786cfd69c22c608b70d2d 81 SMART SM00357 17 81 1.5E-31 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 ALFP_1415 e0226ca6228786cfd69c22c608b70d2d 81 SUPERFAMILY SSF50249 15 79 1.5E-25 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_1415 e0226ca6228786cfd69c22c608b70d2d 81 ProSitePatterns PS00352 'Cold-shock' domain signature. 29 48 - T 12-10-2018 IPR019844 Cold-shock conserved site ALFP_1415 e0226ca6228786cfd69c22c608b70d2d 81 Pfam PF00313 'Cold-shock' DNA-binding domain 17 80 7.9E-30 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ALFP_1415 e0226ca6228786cfd69c22c608b70d2d 81 Gene3D G3DSA:2.40.50.140 12 80 2.4E-30 T 12-10-2018 ALFP_3029 d796d634f742d0468f3d6362a2ecdeb1 466 Pfam PF08521 Two-component sensor kinase N-terminal 41 172 1.6E-9 T 12-10-2018 IPR013727 Two-component sensor kinase, N-terminal ALFP_3029 d796d634f742d0468f3d6362a2ecdeb1 466 SMART SM00387 353 464 1.8E-25 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_3029 d796d634f742d0468f3d6362a2ecdeb1 466 SUPERFAMILY SSF47384 233 312 4.12E-14 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_3029 d796d634f742d0468f3d6362a2ecdeb1 466 Pfam PF00512 His Kinase A (phospho-acceptor) domain 251 311 1.1E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_3029 d796d634f742d0468f3d6362a2ecdeb1 466 SUPERFAMILY SSF55874 303 462 6.42E-29 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_3029 d796d634f742d0468f3d6362a2ecdeb1 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 4.1E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3029 d796d634f742d0468f3d6362a2ecdeb1 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 405 4.1E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3029 d796d634f742d0468f3d6362a2ecdeb1 466 Gene3D G3DSA:3.30.565.10 314 462 1.5E-25 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_3029 d796d634f742d0468f3d6362a2ecdeb1 466 Gene3D G3DSA:1.10.287.130 199 313 3.5E-21 T 12-10-2018 ALFP_3029 d796d634f742d0468f3d6362a2ecdeb1 466 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 358 462 4.9E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_3029 d796d634f742d0468f3d6362a2ecdeb1 466 SMART SM00388 250 313 2.6E-13 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_2457 676f761d127e9ee435c6bbd079c62c10 215 SUPERFAMILY SSF47616 82 213 8.53E-30 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily ALFP_2457 676f761d127e9ee435c6bbd079c62c10 215 Gene3D G3DSA:3.40.30.10 3 79 1.8E-25 T 12-10-2018 ALFP_2457 676f761d127e9ee435c6bbd079c62c10 215 SUPERFAMILY SSF52833 1 86 2.93E-23 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_2457 676f761d127e9ee435c6bbd079c62c10 215 Gene3D G3DSA:1.20.1050.10 85 215 2.3E-48 T 12-10-2018 ALFP_2457 676f761d127e9ee435c6bbd079c62c10 215 Pfam PF02798 Glutathione S-transferase, N-terminal domain 1 76 5.3E-17 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 ALFP_2457 676f761d127e9ee435c6bbd079c62c10 215 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 2 214 9.7E-87 T 12-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 ALFP_2611 b9b71dda0ca9c91265daa2bd1dd74862 208 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 9 207 28.212 T 12-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 ALFP_2611 b9b71dda0ca9c91265daa2bd1dd74862 208 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 35 197 9.3E-40 T 12-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like ALFP_2611 b9b71dda0ca9c91265daa2bd1dd74862 208 Gene3D G3DSA:2.50.20.10 23 206 1.5E-47 T 12-10-2018 ALFP_2611 b9b71dda0ca9c91265daa2bd1dd74862 208 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 7 118 2.3E-16 T 12-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 ALFP_2611 b9b71dda0ca9c91265daa2bd1dd74862 208 SUPERFAMILY SSF89392 26 207 2.71E-41 T 12-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX ALFP_0278 f3a39b09596377315cec5dd7461e4f6c 390 SMART SM00925 127 283 6.2E-79 T 12-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 ALFP_0278 f3a39b09596377315cec5dd7461e4f6c 390 Gene3D G3DSA:2.40.40.10 29 382 7.0E-120 T 12-10-2018 IPR036908 RlpA-like domain superfamily ALFP_0278 f3a39b09596377315cec5dd7461e4f6c 390 Gene3D G3DSA:2.40.240.50 126 285 7.0E-120 T 12-10-2018 ALFP_0278 f3a39b09596377315cec5dd7461e4f6c 390 Pfam PF06725 3D domain 306 379 3.7E-26 T 12-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 ALFP_0278 f3a39b09596377315cec5dd7461e4f6c 390 PIRSF PIRSF019422 3 389 2.4E-123 T 12-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A ALFP_0278 f3a39b09596377315cec5dd7461e4f6c 390 SUPERFAMILY SSF50685 14 383 6.28E-119 T 12-10-2018 IPR036908 RlpA-like domain superfamily ALFP_0278 f3a39b09596377315cec5dd7461e4f6c 390 Pfam PF03562 MltA specific insert domain 35 283 1.5E-79 T 12-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 ALFP_3439 c29cfd6cbb5324c3b050be1d52db904e 163 Pfam PF02416 mttA/Hcf106 family 4 51 3.4E-9 T 12-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 ALFP_3439 c29cfd6cbb5324c3b050be1d52db904e 163 Gene3D G3DSA:1.20.120.20 26 123 1.4E-5 T 12-10-2018 ALFP_3439 c29cfd6cbb5324c3b050be1d52db904e 163 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 151 17.233 T 12-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 ALFP_3439 c29cfd6cbb5324c3b050be1d52db904e 163 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 2.3E-17 T 12-10-2018 ALFP_3439 c29cfd6cbb5324c3b050be1d52db904e 163 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 2.3E-17 T 12-10-2018 ALFP_3439 c29cfd6cbb5324c3b050be1d52db904e 163 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 2.3E-17 T 12-10-2018 ALFP_3439 c29cfd6cbb5324c3b050be1d52db904e 163 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 69 6.0E-21 T 12-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 ALFP_3571 22a9d1f7c4bb30ce6521197de5789fe8 92 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 84 3.2E-12 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_3571 22a9d1f7c4bb30ce6521197de5789fe8 92 SUPERFAMILY SSF54292 2 92 2.36E-21 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_3571 22a9d1f7c4bb30ce6521197de5789fe8 92 Gene3D G3DSA:3.10.20.30 1 92 4.4E-22 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_3571 22a9d1f7c4bb30ce6521197de5789fe8 92 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ALFP_0227 ea87ebb6cafc5a546f56746b52de4979 422 SUPERFAMILY SSF53822 15 388 2.12E-47 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_0227 ea87ebb6cafc5a546f56746b52de4979 422 Pfam PF13458 Periplasmic binding protein 14 382 8.2E-78 T 12-10-2018 IPR028081 Leucine-binding protein domain ALFP_0227 ea87ebb6cafc5a546f56746b52de4979 422 Gene3D G3DSA:3.40.50.2300 134 274 5.9E-68 T 12-10-2018 ALFP_0227 ea87ebb6cafc5a546f56746b52de4979 422 Gene3D G3DSA:3.40.50.2300 23 345 5.9E-68 T 12-10-2018 ALFP_0843 5ba540ad995454ea498a7019ac7163fb 349 Gene3D G3DSA:3.30.1330.10 7 172 5.1E-66 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily ALFP_0843 5ba540ad995454ea498a7019ac7163fb 349 Pfam PF00586 AIR synthase related protein, N-terminal domain 59 166 8.2E-14 T 12-10-2018 IPR016188 PurM-like, N-terminal domain ALFP_0843 5ba540ad995454ea498a7019ac7163fb 349 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 9 348 46.156 T 12-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 ALFP_0843 5ba540ad995454ea498a7019ac7163fb 349 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 9 338 3.7E-138 T 12-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 ALFP_0843 5ba540ad995454ea498a7019ac7163fb 349 Pfam PF02769 AIR synthase related protein, C-terminal domain 179 344 6.0E-38 T 12-10-2018 IPR010918 PurM-like, C-terminal domain ALFP_0843 5ba540ad995454ea498a7019ac7163fb 349 Gene3D G3DSA:3.90.650.10 173 349 3.9E-68 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily ALFP_0843 5ba540ad995454ea498a7019ac7163fb 349 SUPERFAMILY SSF56042 173 344 3.89E-58 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily ALFP_0843 5ba540ad995454ea498a7019ac7163fb 349 SUPERFAMILY SSF55326 9 172 7.15E-51 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 SUPERFAMILY SSF55874 1 207 4.58E-58 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR00418 DNA topoisomerase II family signature 571 587 1.1E-60 T 12-10-2018 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR00418 DNA topoisomerase II family signature 20 35 1.1E-60 T 12-10-2018 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR00418 DNA topoisomerase II family signature 412 426 1.1E-60 T 12-10-2018 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR00418 DNA topoisomerase II family signature 101 115 1.1E-60 T 12-10-2018 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR00418 DNA topoisomerase II family signature 264 277 1.1E-60 T 12-10-2018 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR00418 DNA topoisomerase II family signature 55 68 1.1E-60 T 12-10-2018 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR00418 DNA topoisomerase II family signature 519 531 1.1E-60 T 12-10-2018 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR00418 DNA topoisomerase II family signature 481 497 1.1E-60 T 12-10-2018 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR00418 DNA topoisomerase II family signature 499 516 1.1E-60 T 12-10-2018 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR01098 Topoisomerase IV subunit B signature 309 324 1.6E-43 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR01098 Topoisomerase IV subunit B signature 446 467 1.6E-43 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR01098 Topoisomerase IV subunit B signature 15 28 1.6E-43 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR01098 Topoisomerase IV subunit B signature 292 308 1.6E-43 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR01098 Topoisomerase IV subunit B signature 127 141 1.6E-43 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR01098 Topoisomerase IV subunit B signature 141 156 1.6E-43 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR01098 Topoisomerase IV subunit B signature 184 205 1.6E-43 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR01098 Topoisomerase IV subunit B signature 336 359 1.6E-43 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR01098 Topoisomerase IV subunit B signature 360 385 1.6E-43 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 PRINTS PR01098 Topoisomerase IV subunit B signature 166 183 1.6E-43 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 Gene3D G3DSA:3.30.565.10 1 207 2.1E-65 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 SUPERFAMILY SSF54211 209 379 2.85E-34 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 SMART SM00387 16 165 7.7E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 Gene3D G3DSA:3.30.230.10 208 387 5.4E-46 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 SMART SM00433 22 635 9.4E-188 T 12-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 567 631 3.7E-24 T 12-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 SUPERFAMILY SSF56719 387 632 8.89E-76 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 Pfam PF01751 Toprim domain 411 525 2.1E-12 T 12-10-2018 IPR006171 TOPRIM domain ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 Gene3D G3DSA:3.40.50.670 388 634 3.3E-85 T 12-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 1 639 42.359 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 ProSitePatterns PS00177 DNA topoisomerase II signature. 414 422 - T 12-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 Pfam PF00204 DNA gyrase B 210 383 2.9E-33 T 12-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 ALFP_2250 bdc16f740f3460c6dec0476a6ab37ec5 641 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 22 163 3.3E-14 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2428 3583c400ab88364518923e6df7be1ca7 308 TIGRFAM TIGR02408 ectoine_ThpD: ectoine hydroxylase 22 296 2.0E-131 T 12-10-2018 IPR012774 Ectoine dioxygenase GO:0016706|GO:0055114 ALFP_2428 3583c400ab88364518923e6df7be1ca7 308 SUPERFAMILY SSF51197 31 292 1.1E-62 T 12-10-2018 ALFP_2428 3583c400ab88364518923e6df7be1ca7 308 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 46 261 8.8E-35 T 12-10-2018 IPR008775 Phytanoyl-CoA dioxygenase ALFP_2428 3583c400ab88364518923e6df7be1ca7 308 Gene3D G3DSA:2.60.120.620 2 307 1.1E-110 T 12-10-2018 ALFP_3234 0c14d5a0b33cbcf081eac32b3e0f2e00 216 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 14 198 19.55 T 12-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 ALFP_3234 0c14d5a0b33cbcf081eac32b3e0f2e00 216 Gene3D G3DSA:2.60.450.10 51 202 2.3E-26 T 12-10-2018 ALFP_3234 0c14d5a0b33cbcf081eac32b3e0f2e00 216 Pfam PF03968 OstA-like protein 57 174 3.9E-19 T 12-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal ALFP_3234 0c14d5a0b33cbcf081eac32b3e0f2e00 216 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 49 197 2.9E-24 T 12-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 ALFP_3083 e00dfe3850483561c81d3e6b58a3abbd 213 SMART SM00421 147 204 8.2E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3083 e00dfe3850483561c81d3e6b58a3abbd 213 SUPERFAMILY SSF52172 11 156 1.31E-30 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_3083 e00dfe3850483561c81d3e6b58a3abbd 213 Gene3D G3DSA:3.40.50.2300 7 139 8.9E-45 T 12-10-2018 ALFP_3083 e00dfe3850483561c81d3e6b58a3abbd 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 202 1.2E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3083 e00dfe3850483561c81d3e6b58a3abbd 213 Pfam PF00072 Response regulator receiver domain 14 123 1.4E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_3083 e00dfe3850483561c81d3e6b58a3abbd 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 1.4E-7 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3083 e00dfe3850483561c81d3e6b58a3abbd 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 1.4E-7 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3083 e00dfe3850483561c81d3e6b58a3abbd 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 1.4E-7 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3083 e00dfe3850483561c81d3e6b58a3abbd 213 SUPERFAMILY SSF46894 139 206 2.24E-14 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ALFP_3083 e00dfe3850483561c81d3e6b58a3abbd 213 Gene3D G3DSA:1.10.10.10 142 204 3.1E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3083 e00dfe3850483561c81d3e6b58a3abbd 213 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3083 e00dfe3850483561c81d3e6b58a3abbd 213 SMART SM00448 12 123 2.5E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2756 43fb1bf240c72564ce71b90675197f68 448 Gene3D G3DSA:3.90.1150.10 33 440 1.1E-156 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_2756 43fb1bf240c72564ce71b90675197f68 448 PIRSF PIRSF000521 193 447 7.5E-17 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_2756 43fb1bf240c72564ce71b90675197f68 448 PIRSF PIRSF000521 26 146 6.3E-4 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_2756 43fb1bf240c72564ce71b90675197f68 448 SUPERFAMILY SSF53383 17 447 2.82E-116 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2756 43fb1bf240c72564ce71b90675197f68 448 Gene3D G3DSA:3.40.640.10 69 351 1.1E-156 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2756 43fb1bf240c72564ce71b90675197f68 448 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 256 293 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_2756 43fb1bf240c72564ce71b90675197f68 448 Pfam PF00202 Aminotransferase class-III 34 440 7.4E-87 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_1988 292932e4182e43e17d72f29343f561db 287 Gene3D G3DSA:3.40.50.10860 8 276 6.3E-113 T 12-10-2018 ALFP_1988 292932e4182e43e17d72f29343f561db 287 SUPERFAMILY SSF51735 123 281 7.22E-53 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1988 292932e4182e43e17d72f29343f561db 287 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 12-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 ALFP_1988 292932e4182e43e17d72f29343f561db 287 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 39.557 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 ALFP_1988 292932e4182e43e17d72f29343f561db 287 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 282 2.4E-70 T 12-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 ALFP_1988 292932e4182e43e17d72f29343f561db 287 SUPERFAMILY SSF53223 1 122 7.1E-41 T 12-10-2018 ALFP_1988 292932e4182e43e17d72f29343f561db 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 1.0E-79 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 ALFP_1988 292932e4182e43e17d72f29343f561db 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 1.0E-79 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 ALFP_1988 292932e4182e43e17d72f29343f561db 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 1.0E-79 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 ALFP_1988 292932e4182e43e17d72f29343f561db 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 1.0E-79 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 ALFP_1988 292932e4182e43e17d72f29343f561db 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 1.0E-79 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 ALFP_1988 292932e4182e43e17d72f29343f561db 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 1.0E-79 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 ALFP_1988 292932e4182e43e17d72f29343f561db 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 1.0E-79 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 ALFP_1988 292932e4182e43e17d72f29343f561db 287 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 12-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 ALFP_1988 292932e4182e43e17d72f29343f561db 287 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 1.2E-41 T 12-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 ALFP_1988 292932e4182e43e17d72f29343f561db 287 Gene3D G3DSA:3.40.50.720 6 259 6.3E-113 T 12-10-2018 ALFP_3402 a2ba7a6eb0847687c6781d5c02a60d4c 347 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 29 322 1.2E-84 T 12-10-2018 IPR010732 Type VI secretion, TssG-like ALFP_3402 a2ba7a6eb0847687c6781d5c02a60d4c 347 Pfam PF06996 Type VI secretion, TssG 29 322 1.6E-85 T 12-10-2018 IPR010732 Type VI secretion, TssG-like ALFP_0066 c740eaf278f8076d6da83a79bcecb246 736 Gene3D G3DSA:3.40.50.970 3 205 9.5E-24 T 12-10-2018 ALFP_0066 c740eaf278f8076d6da83a79bcecb246 736 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 458 602 7.6E-20 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 ALFP_0066 c740eaf278f8076d6da83a79bcecb246 736 SUPERFAMILY SSF52518 424 651 3.3E-29 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_0066 c740eaf278f8076d6da83a79bcecb246 736 SUPERFAMILY SSF52518 20 248 1.62E-26 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_0066 c740eaf278f8076d6da83a79bcecb246 736 Gene3D G3DSA:3.40.50.970 449 629 1.8E-16 T 12-10-2018 ALFP_1379 3b2efd5b7f2803286f9f70493e42f6cb 407 Gene3D G3DSA:3.90.1150.10 258 388 7.0E-38 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_1379 3b2efd5b7f2803286f9f70493e42f6cb 407 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 201 215 - T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 ALFP_1379 3b2efd5b7f2803286f9f70493e42f6cb 407 Gene3D G3DSA:3.40.640.10 7 256 5.5E-70 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_1379 3b2efd5b7f2803286f9f70493e42f6cb 407 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 9 385 3.7E-102 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 ALFP_1379 3b2efd5b7f2803286f9f70493e42f6cb 407 PIRSF PIRSF001434 2 389 4.6E-119 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 ALFP_1379 3b2efd5b7f2803286f9f70493e42f6cb 407 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 9 387 9.8E-140 T 12-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 ALFP_1379 3b2efd5b7f2803286f9f70493e42f6cb 407 SUPERFAMILY SSF53383 29 387 1.85E-94 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_1089 7a272e7dc8f4c2025437706999cd67d0 891 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 200 293 1.3E-6 T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 ALFP_1089 7a272e7dc8f4c2025437706999cd67d0 891 SUPERFAMILY SSF52518 473 699 1.41E-89 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_1089 7a272e7dc8f4c2025437706999cd67d0 891 PIRSF PIRSF000156 1 891 0.0 T 12-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 ALFP_1089 7a272e7dc8f4c2025437706999cd67d0 891 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 8 890 0.0 T 12-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 ALFP_1089 7a272e7dc8f4c2025437706999cd67d0 891 Gene3D G3DSA:3.40.50.970 472 705 8.0E-103 T 12-10-2018 ALFP_1089 7a272e7dc8f4c2025437706999cd67d0 891 SUPERFAMILY SSF52922 701 889 3.14E-56 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 ALFP_1089 7a272e7dc8f4c2025437706999cd67d0 891 Gene3D G3DSA:3.40.50.970 57 471 4.4E-122 T 12-10-2018 ALFP_1089 7a272e7dc8f4c2025437706999cd67d0 891 Gene3D G3DSA:3.40.50.920 706 890 3.1E-72 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 ALFP_1089 7a272e7dc8f4c2025437706999cd67d0 891 SUPERFAMILY SSF52518 58 467 2.15E-126 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_0608 8167ff9d058747b152c66a7181493bc6 438 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 235 340 2.1E-18 T 12-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0608 8167ff9d058747b152c66a7181493bc6 438 Gene3D G3DSA:3.40.120.10 1 129 3.8E-38 T 12-10-2018 ALFP_0608 8167ff9d058747b152c66a7181493bc6 438 Gene3D G3DSA:3.30.310.50 345 438 4.8E-25 T 12-10-2018 ALFP_0608 8167ff9d058747b152c66a7181493bc6 438 SUPERFAMILY SSF53738 234 338 1.88E-30 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0608 8167ff9d058747b152c66a7181493bc6 438 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 76 85 - T 12-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0608 8167ff9d058747b152c66a7181493bc6 438 Gene3D G3DSA:3.40.120.10 149 226 7.4E-31 T 12-10-2018 ALFP_0608 8167ff9d058747b152c66a7181493bc6 438 SUPERFAMILY SSF53738 1 113 5.1E-32 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0608 8167ff9d058747b152c66a7181493bc6 438 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 134 230 4.9E-24 T 12-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0608 8167ff9d058747b152c66a7181493bc6 438 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 350 427 6.5E-10 T 12-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0608 8167ff9d058747b152c66a7181493bc6 438 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 1 114 1.7E-29 T 12-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0608 8167ff9d058747b152c66a7181493bc6 438 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 75 89 1.9E-22 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0608 8167ff9d058747b152c66a7181493bc6 438 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 181 194 1.9E-22 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0608 8167ff9d058747b152c66a7181493bc6 438 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 147 166 1.9E-22 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0608 8167ff9d058747b152c66a7181493bc6 438 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 210 225 1.9E-22 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0608 8167ff9d058747b152c66a7181493bc6 438 SUPERFAMILY SSF53738 131 232 4.32E-30 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0608 8167ff9d058747b152c66a7181493bc6 438 Gene3D G3DSA:3.40.120.10 227 344 1.3E-38 T 12-10-2018 ALFP_0608 8167ff9d058747b152c66a7181493bc6 438 SUPERFAMILY SSF55957 343 437 7.32E-20 T 12-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_2158 3207650546fc1bd8f881356aca4f15c4 165 Gene3D G3DSA:3.30.70.3460 28 165 3.2E-33 T 12-10-2018 ALFP_2158 3207650546fc1bd8f881356aca4f15c4 165 SUPERFAMILY SSF46785 28 83 7.16E-5 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1967 dbe625d7e717b2dd512add64baf72a7f 400 SUPERFAMILY SSF51735 4 151 2.52E-37 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1967 dbe625d7e717b2dd512add64baf72a7f 400 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 6 393 44.595 T 12-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 ALFP_1967 dbe625d7e717b2dd512add64baf72a7f 400 Gene3D G3DSA:1.10.1740.10 310 397 5.2E-26 T 12-10-2018 ALFP_1967 dbe625d7e717b2dd512add64baf72a7f 400 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 393 3.4E-137 T 12-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 ALFP_1967 dbe625d7e717b2dd512add64baf72a7f 400 PIRSF PIRSF006205 3 399 1.5E-142 T 12-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 ALFP_1967 dbe625d7e717b2dd512add64baf72a7f 400 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 147 237 7.3E-38 T 12-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 ALFP_1967 dbe625d7e717b2dd512add64baf72a7f 400 Gene3D G3DSA:3.40.50.720 1 151 2.5E-45 T 12-10-2018 ALFP_1967 dbe625d7e717b2dd512add64baf72a7f 400 Pfam PF13288 DXP reductoisomerase C-terminal domain 269 388 4.7E-37 T 12-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 ALFP_1967 dbe625d7e717b2dd512add64baf72a7f 400 SUPERFAMILY SSF69055 300 394 8.76E-28 T 12-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 ALFP_1967 dbe625d7e717b2dd512add64baf72a7f 400 SUPERFAMILY SSF55347 127 272 1.83E-61 T 12-10-2018 ALFP_1967 dbe625d7e717b2dd512add64baf72a7f 400 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 6 133 4.5E-37 T 12-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 ALFP_3655 fe7f6fca21d3339010dc55547b021cad 322 Pfam PF12852 Cupin 26 197 4.4E-33 T 12-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain ALFP_3655 fe7f6fca21d3339010dc55547b021cad 322 SUPERFAMILY SSF46689 223 267 5.73E-5 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_3655 fe7f6fca21d3339010dc55547b021cad 322 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 271 312 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ALFP_3655 fe7f6fca21d3339010dc55547b021cad 322 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 300 316 5.0E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_3655 fe7f6fca21d3339010dc55547b021cad 322 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 285 300 5.0E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_3655 fe7f6fca21d3339010dc55547b021cad 322 Gene3D G3DSA:2.60.120.10 14 101 9.4E-6 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_3655 fe7f6fca21d3339010dc55547b021cad 322 SMART SM00342 234 316 3.3E-28 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_3655 fe7f6fca21d3339010dc55547b021cad 322 Pfam PF12833 Helix-turn-helix domain 240 318 3.1E-21 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_3655 fe7f6fca21d3339010dc55547b021cad 322 Gene3D G3DSA:1.10.10.60 221 322 1.5E-25 T 12-10-2018 ALFP_3655 fe7f6fca21d3339010dc55547b021cad 322 SUPERFAMILY SSF46689 270 318 3.49E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0771 ac1dc40216809e9485b500647ca20fe1 382 Gene3D G3DSA:3.90.380.10 17 372 1.7E-40 T 12-10-2018 ALFP_0771 ac1dc40216809e9485b500647ca20fe1 382 Pfam PF00355 Rieske [2Fe-2S] domain 41 134 2.8E-9 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ALFP_0771 ac1dc40216809e9485b500647ca20fe1 382 SUPERFAMILY SSF50022 11 153 1.02E-26 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_0771 ac1dc40216809e9485b500647ca20fe1 382 Gene3D G3DSA:2.102.10.10 37 163 1.7E-40 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_0771 ac1dc40216809e9485b500647ca20fe1 382 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 181 377 4.5E-34 T 12-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 ALFP_0771 ac1dc40216809e9485b500647ca20fe1 382 SUPERFAMILY SSF55961 162 375 2.2E-43 T 12-10-2018 ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 Pfam PF05746 DALR anticodon binding domain 475 592 2.2E-33 T 12-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 PRINTS PR01038 Arginyl-tRNA synthetase signature 191 204 1.6E-22 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 PRINTS PR01038 Arginyl-tRNA synthetase signature 167 183 1.6E-22 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 PRINTS PR01038 Arginyl-tRNA synthetase signature 342 363 1.6E-22 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 PRINTS PR01038 Arginyl-tRNA synthetase signature 152 167 1.6E-22 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 Pfam PF00750 tRNA synthetases class I (R) 139 436 1.4E-19 T 12-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 Hamap MF_00123 Arginine--tRNA ligase [argS]. 38 592 25.413 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 SUPERFAMILY SSF47323 470 592 1.96E-35 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 Gene3D G3DSA:3.40.50.620 152 469 4.6E-154 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 SMART SM00836 475 592 7.6E-50 T 12-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 Gene3D G3DSA:1.10.730.10 470 592 4.6E-154 T 12-10-2018 ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 SUPERFAMILY SSF55190 30 144 2.88E-22 T 12-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 39 124 1.0E-22 T 12-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 SMART SM01016 38 124 1.8E-32 T 12-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 SUPERFAMILY SSF52374 149 485 1.07E-81 T 12-10-2018 ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 37 592 8.0E-131 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 Gene3D G3DSA:3.30.1360.70 33 142 8.5E-24 T 12-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 ALFP_0146 1db5f93aee8684c02aecf8ec4fed8ba9 592 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 162 171 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_3490 916a585249944265a1f1e37ebac72d1a 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 1.4E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3490 916a585249944265a1f1e37ebac72d1a 314 SUPERFAMILY SSF46785 9 92 4.94E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3490 916a585249944265a1f1e37ebac72d1a 314 Pfam PF03466 LysR substrate binding domain 95 300 4.6E-28 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_3490 916a585249944265a1f1e37ebac72d1a 314 Gene3D G3DSA:3.40.190.10 98 290 4.1E-29 T 12-10-2018 ALFP_3490 916a585249944265a1f1e37ebac72d1a 314 SUPERFAMILY SSF53850 97 306 3.9E-31 T 12-10-2018 ALFP_3490 916a585249944265a1f1e37ebac72d1a 314 Gene3D G3DSA:3.40.190.10 171 276 4.1E-29 T 12-10-2018 ALFP_3490 916a585249944265a1f1e37ebac72d1a 314 Gene3D G3DSA:1.10.10.10 3 91 8.5E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3629 8a2c4f96a52fc07c7bfd0ee25fb935ae 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 1.0E-56 T 12-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 ALFP_3629 8a2c4f96a52fc07c7bfd0ee25fb935ae 122 Gene3D G3DSA:2.40.150.20 1 122 1.5E-52 T 12-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 ALFP_3629 8a2c4f96a52fc07c7bfd0ee25fb935ae 122 SUPERFAMILY SSF50193 1 122 2.62E-50 T 12-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 ALFP_3629 8a2c4f96a52fc07c7bfd0ee25fb935ae 122 SMART SM01374 1 122 2.6E-82 T 12-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 ALFP_3629 8a2c4f96a52fc07c7bfd0ee25fb935ae 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 12-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3629 8a2c4f96a52fc07c7bfd0ee25fb935ae 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 1.6E-53 T 12-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 ALFP_3629 8a2c4f96a52fc07c7bfd0ee25fb935ae 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.342 T 12-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 ALFP_2985 b144db3b2dfb2f80d2514b744c1f1de4 335 Hamap MF_00469 UPF0176 protein YceA [yceA]. 2 258 44.468 T 12-10-2018 IPR020936 Uncharacterised protein family UPF0176 ALFP_2985 b144db3b2dfb2f80d2514b744c1f1de4 335 Gene3D G3DSA:3.40.250.10 97 253 1.7E-44 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_2985 b144db3b2dfb2f80d2514b744c1f1de4 335 SUPERFAMILY SSF52821 90 229 5.9E-27 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_2985 b144db3b2dfb2f80d2514b744c1f1de4 335 Pfam PF00581 Rhodanese-like domain 116 214 1.3E-5 T 12-10-2018 IPR001763 Rhodanese-like domain ALFP_2985 b144db3b2dfb2f80d2514b744c1f1de4 335 SMART SM00450 113 218 8.1E-15 T 12-10-2018 IPR001763 Rhodanese-like domain ALFP_2985 b144db3b2dfb2f80d2514b744c1f1de4 335 Gene3D G3DSA:3.30.70.100 1 96 1.3E-34 T 12-10-2018 ALFP_0966 2102e3dfa13894a2afe5f30a24111737 426 SUPERFAMILY SSF75304 9 411 2.62E-99 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_0966 2102e3dfa13894a2afe5f30a24111737 426 Gene3D G3DSA:3.90.1300.10 2 416 5.3E-114 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_0966 2102e3dfa13894a2afe5f30a24111737 426 Pfam PF01425 Amidase 17 210 1.5E-64 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_0966 2102e3dfa13894a2afe5f30a24111737 426 Pfam PF01425 Amidase 320 404 3.6E-5 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_2173 2f9939d25ee68979bb2f71f0d6049621 266 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 253 9.1E-49 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_2173 2f9939d25ee68979bb2f71f0d6049621 266 SMART SM00062 36 255 1.6E-46 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_2173 2f9939d25ee68979bb2f71f0d6049621 266 SUPERFAMILY SSF53850 9 255 1.85E-56 T 12-10-2018 ALFP_2173 2f9939d25ee68979bb2f71f0d6049621 266 Gene3D G3DSA:3.40.190.10 123 213 6.4E-57 T 12-10-2018 ALFP_2173 2f9939d25ee68979bb2f71f0d6049621 266 Gene3D G3DSA:3.40.190.10 28 247 6.4E-57 T 12-10-2018 ALFP_1040 10ed28e80b18fc75bf04b0c3a65514d6 86 SUPERFAMILY SSF109910 3 81 3.01E-18 T 12-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily ALFP_1040 10ed28e80b18fc75bf04b0c3a65514d6 86 Pfam PF03937 Flavinator of succinate dehydrogenase 9 77 2.5E-19 T 12-10-2018 IPR005631 Flavinator of succinate dehydrogenase ALFP_1040 10ed28e80b18fc75bf04b0c3a65514d6 86 Gene3D G3DSA:1.10.150.250 1 84 3.7E-19 T 12-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily ALFP_3440 802629f3ab46aab45b668852d6daf755 255 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 4 242 16.826 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 ALFP_3440 802629f3ab46aab45b668852d6daf755 255 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 12 230 1.2E-67 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 ALFP_3440 802629f3ab46aab45b668852d6daf755 255 Pfam PF00902 Sec-independent protein translocase protein (TatC) 14 225 6.4E-65 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 ALFP_3440 802629f3ab46aab45b668852d6daf755 255 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 158 186 1.3E-46 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 ALFP_3440 802629f3ab46aab45b668852d6daf755 255 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 10 37 1.3E-46 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 ALFP_3440 802629f3ab46aab45b668852d6daf755 255 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 107 133 1.3E-46 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 ALFP_3440 802629f3ab46aab45b668852d6daf755 255 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 89 107 1.3E-46 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 ALFP_3099 c853eb151425ed21d474bef035a06ff9 454 SUPERFAMILY SSF48150 84 251 2.09E-41 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 ALFP_3099 c853eb151425ed21d474bef035a06ff9 454 Gene3D G3DSA:1.10.340.30 85 200 1.4E-69 T 12-10-2018 ALFP_3099 c853eb151425ed21d474bef035a06ff9 454 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 289 361 5.9E-5 T 12-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 ALFP_3099 c853eb151425ed21d474bef035a06ff9 454 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 366 445 1.5E-30 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 ALFP_3099 c853eb151425ed21d474bef035a06ff9 454 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 365 444 3.7E-32 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 ALFP_3099 c853eb151425ed21d474bef035a06ff9 454 Gene3D G3DSA:3.30.160.70 271 363 3.4E-27 T 12-10-2018 ALFP_3099 c853eb151425ed21d474bef035a06ff9 454 Gene3D G3DSA:1.10.1670.40 61 250 1.4E-69 T 12-10-2018 ALFP_3099 c853eb151425ed21d474bef035a06ff9 454 SUPERFAMILY SSF46767 364 445 1.28E-28 T 12-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 ALFP_3099 c853eb151425ed21d474bef035a06ff9 454 SUPERFAMILY SSF53155 285 362 3.73E-19 T 12-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 ALFP_3099 c853eb151425ed21d474bef035a06ff9 454 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 93 234 2.8E-12 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 ALFP_3099 c853eb151425ed21d474bef035a06ff9 454 SMART SM00478 97 253 8.1E-12 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 ALFP_3099 c853eb151425ed21d474bef035a06ff9 454 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 415 421 - T 12-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 ALFP_3099 c853eb151425ed21d474bef035a06ff9 454 Gene3D G3DSA:1.10.10.10 364 449 8.8E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2042 329e87a9d3339bc6c1936fa95c9cc177 126 Gene3D G3DSA:3.40.30.10 1 120 4.5E-31 T 12-10-2018 ALFP_2042 329e87a9d3339bc6c1936fa95c9cc177 126 SUPERFAMILY SSF52833 2 103 1.74E-32 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_2042 329e87a9d3339bc6c1936fa95c9cc177 126 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 ALFP_2042 329e87a9d3339bc6c1936fa95c9cc177 126 PRINTS PR00421 Thioredoxin family signature 29 38 1.8E-8 T 12-10-2018 ALFP_2042 329e87a9d3339bc6c1936fa95c9cc177 126 PRINTS PR00421 Thioredoxin family signature 21 29 1.8E-8 T 12-10-2018 ALFP_2042 329e87a9d3339bc6c1936fa95c9cc177 126 PRINTS PR00421 Thioredoxin family signature 68 79 1.8E-8 T 12-10-2018 ALFP_2042 329e87a9d3339bc6c1936fa95c9cc177 126 TIGRFAM TIGR01068 thioredoxin: thioredoxin 7 102 7.2E-30 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 ALFP_2042 329e87a9d3339bc6c1936fa95c9cc177 126 Pfam PF00085 Thioredoxin 3 101 8.9E-27 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 ALFP_2042 329e87a9d3339bc6c1936fa95c9cc177 126 PIRSF PIRSF000077 1 104 4.3E-28 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 ALFP_2408 9d3f81391fc4b72416c3539d08b87afe 424 Pfam PF02913 FAD linked oxidases, C-terminal domain 177 416 8.0E-65 T 12-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 ALFP_2408 9d3f81391fc4b72416c3539d08b87afe 424 SUPERFAMILY SSF56176 2 177 7.01E-65 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 ALFP_2408 9d3f81391fc4b72416c3539d08b87afe 424 Pfam PF01565 FAD binding domain 3 139 4.5E-37 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 ALFP_2408 9d3f81391fc4b72416c3539d08b87afe 424 SUPERFAMILY SSF55103 181 420 3.6E-71 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 ALFP_2408 9d3f81391fc4b72416c3539d08b87afe 424 Gene3D G3DSA:3.30.465.40 1 189 7.3E-72 T 12-10-2018 ALFP_2408 9d3f81391fc4b72416c3539d08b87afe 424 Gene3D G3DSA:3.30.70.2740 296 377 2.5E-11 T 12-10-2018 ALFP_2408 9d3f81391fc4b72416c3539d08b87afe 424 Gene3D G3DSA:1.10.45.10 378 418 1.1E-13 T 12-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 Pfam PF01624 MutS domain I 11 122 1.2E-39 T 12-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 PIRSF PIRSF037677 3 201 2.4E-23 T 12-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 PIRSF PIRSF037677 204 852 1.3E-122 T 12-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 SUPERFAMILY SSF55271 6 118 2.75E-40 T 12-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 10 866 24.235 T 12-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 Gene3D G3DSA:1.10.1420.10 402 518 2.0E-97 T 12-10-2018 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 Pfam PF05192 MutS domain III 275 574 3.3E-39 T 12-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 SUPERFAMILY SSF52540 582 811 4.28E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 Pfam PF05190 MutS family domain IV 443 534 2.6E-29 T 12-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 Pfam PF00488 MutS domain V 625 811 1.4E-80 T 12-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 Gene3D G3DSA:3.30.420.110 134 267 2.6E-31 T 12-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 Gene3D G3DSA:1.10.1420.10 271 574 2.0E-97 T 12-10-2018 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 SUPERFAMILY SSF48334 272 581 1.19E-85 T 12-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 Gene3D G3DSA:3.40.50.300 583 877 5.8E-94 T 12-10-2018 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 702 718 - T 12-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 SUPERFAMILY SSF53150 120 285 4.97E-35 T 12-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 SMART SM00533 288 606 4.4E-89 T 12-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 Pfam PF05188 MutS domain II 133 257 4.2E-19 T 12-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 Gene3D G3DSA:3.40.1170.10 2 124 3.1E-48 T 12-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 10 872 0.0 T 12-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 ALFP_0943 c63e8a4d06b1fcb5bcd700db0c64eba3 878 SMART SM00534 621 808 5.4E-110 T 12-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 ALFP_0931 eab4d43b7fc0bec020e29cda720a66c0 301 SMART SM01130 10 298 8.3E-138 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0931 eab4d43b7fc0bec020e29cda720a66c0 301 Gene3D G3DSA:3.20.20.70 11 300 1.1E-106 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0931 eab4d43b7fc0bec020e29cda720a66c0 301 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 10 296 64.168 T 12-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 ALFP_0931 eab4d43b7fc0bec020e29cda720a66c0 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 80 98 3.5E-31 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0931 eab4d43b7fc0bec020e29cda720a66c0 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 112 128 3.5E-31 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0931 eab4d43b7fc0bec020e29cda720a66c0 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 44 65 3.5E-31 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0931 eab4d43b7fc0bec020e29cda720a66c0 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 137 154 3.5E-31 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0931 eab4d43b7fc0bec020e29cda720a66c0 301 Pfam PF00701 Dihydrodipicolinate synthetase family 10 295 7.3E-99 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0931 eab4d43b7fc0bec020e29cda720a66c0 301 SUPERFAMILY SSF51569 9 298 6.8E-101 T 12-10-2018 ALFP_0931 eab4d43b7fc0bec020e29cda720a66c0 301 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 14 295 3.9E-103 T 12-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 ALFP_0931 eab4d43b7fc0bec020e29cda720a66c0 301 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 142 172 - T 12-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 ALFP_0931 eab4d43b7fc0bec020e29cda720a66c0 301 PIRSF PIRSF001365 7 300 5.6E-88 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_2627 d54aa7dc63890ac5ac51784c8549d72c 285 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 33 179 2.4E-13 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 ALFP_2627 d54aa7dc63890ac5ac51784c8549d72c 285 Gene3D G3DSA:3.40.50.300 5 206 7.6E-28 T 12-10-2018 ALFP_2627 d54aa7dc63890ac5ac51784c8549d72c 285 SUPERFAMILY SSF52540 11 255 2.1E-36 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2627 d54aa7dc63890ac5ac51784c8549d72c 285 SMART SM00382 29 188 4.3E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1669 9ca5df7f4b3587bf8ec34443e2c46710 312 SUPERFAMILY SSF46785 1 82 4.36E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1669 9ca5df7f4b3587bf8ec34443e2c46710 312 SUPERFAMILY SSF53850 90 294 2.12E-31 T 12-10-2018 ALFP_1669 9ca5df7f4b3587bf8ec34443e2c46710 312 Gene3D G3DSA:3.40.190.10 93 291 2.5E-62 T 12-10-2018 ALFP_1669 9ca5df7f4b3587bf8ec34443e2c46710 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 8.8E-23 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1669 9ca5df7f4b3587bf8ec34443e2c46710 312 Gene3D G3DSA:1.10.10.10 1 91 2.8E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1669 9ca5df7f4b3587bf8ec34443e2c46710 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.5E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1669 9ca5df7f4b3587bf8ec34443e2c46710 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.5E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1669 9ca5df7f4b3587bf8ec34443e2c46710 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.5E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1669 9ca5df7f4b3587bf8ec34443e2c46710 312 Pfam PF03466 LysR substrate binding domain 89 288 1.6E-34 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1669 9ca5df7f4b3587bf8ec34443e2c46710 312 Gene3D G3DSA:3.40.190.10 163 266 2.5E-62 T 12-10-2018 ALFP_1577 213696f147058af7d248065c0cba2b13 200 PRINTS PR00127 Clp protease catalytic subunit P signature 58 78 8.6E-20 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ALFP_1577 213696f147058af7d248065c0cba2b13 200 PRINTS PR00127 Clp protease catalytic subunit P signature 110 129 8.6E-20 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ALFP_1577 213696f147058af7d248065c0cba2b13 200 PRINTS PR00127 Clp protease catalytic subunit P signature 167 186 8.6E-20 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ALFP_1577 213696f147058af7d248065c0cba2b13 200 SUPERFAMILY SSF52096 21 194 7.57E-50 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_1577 213696f147058af7d248065c0cba2b13 200 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 111 124 - T 12-10-2018 IPR033135 ClpP, histidine active site ALFP_1577 213696f147058af7d248065c0cba2b13 200 Gene3D G3DSA:3.90.226.10 9 197 4.1E-56 T 12-10-2018 ALFP_1577 213696f147058af7d248065c0cba2b13 200 Pfam PF00574 Clp protease 22 191 1.8E-56 T 12-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA ALFP_1577 213696f147058af7d248065c0cba2b13 200 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 3 192 30.927 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ALFP_1346 b75bca2b9dd9e6998d4b89a0b5197b04 813 SUPERFAMILY SSF82689 697 785 7.59E-13 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 ALFP_1346 b75bca2b9dd9e6998d4b89a0b5197b04 813 Pfam PF12607 Protein of unknown function (DUF3772) 136 194 7.3E-15 T 12-10-2018 IPR022249 Domain of unknown function DUF3772 ALFP_1346 b75bca2b9dd9e6998d4b89a0b5197b04 813 SUPERFAMILY SSF50182 630 695 6.21E-16 T 12-10-2018 IPR010920 LSM domain superfamily ALFP_1346 b75bca2b9dd9e6998d4b89a0b5197b04 813 Pfam PF00924 Mechanosensitive ion channel 587 785 3.4E-45 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 ALFP_1346 b75bca2b9dd9e6998d4b89a0b5197b04 813 SUPERFAMILY SSF82861 545 628 4.84E-12 T 12-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 ALFP_1346 b75bca2b9dd9e6998d4b89a0b5197b04 813 Gene3D G3DSA:3.30.70.100 702 788 1.7E-11 T 12-10-2018 ALFP_1346 b75bca2b9dd9e6998d4b89a0b5197b04 813 Gene3D G3DSA:2.30.30.60 645 693 1.4E-11 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily ALFP_0647 c847c6aedb72986ff792ece28df2fb23 249 SUPERFAMILY SSF51735 5 247 9.7E-78 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0647 c847c6aedb72986ff792ece28df2fb23 249 Gene3D G3DSA:3.40.50.720 1 248 1.4E-78 T 12-10-2018 ALFP_0647 c847c6aedb72986ff792ece28df2fb23 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.1E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0647 c847c6aedb72986ff792ece28df2fb23 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 2.1E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0647 c847c6aedb72986ff792ece28df2fb23 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.1E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0647 c847c6aedb72986ff792ece28df2fb23 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.1E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0647 c847c6aedb72986ff792ece28df2fb23 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 2.1E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0647 c847c6aedb72986ff792ece28df2fb23 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.1E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0647 c847c6aedb72986ff792ece28df2fb23 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 246 2.1E-61 T 12-10-2018 ALFP_0647 c847c6aedb72986ff792ece28df2fb23 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 190 3.4E-4 T 12-10-2018 ALFP_0647 c847c6aedb72986ff792ece28df2fb23 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.2E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0647 c847c6aedb72986ff792ece28df2fb23 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.2E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0647 c847c6aedb72986ff792ece28df2fb23 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.2E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 Gene3D G3DSA:3.30.470.20 119 409 9.8E-128 T 12-10-2018 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 Gene3D G3DSA:3.40.50.1380 938 1078 2.9E-33 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 Gene3D G3DSA:3.40.50.20 556 664 2.8E-49 T 12-10-2018 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 SUPERFAMILY SSF48108 403 556 3.27E-54 T 12-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 Gene3D G3DSA:3.40.50.20 1 116 1.1E-49 T 12-10-2018 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 675 877 9.4E-37 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 341 7.4E-70 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 SMART SM00851 957 1044 1.7E-28 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 SUPERFAMILY SSF56059 128 408 8.49E-107 T 12-10-2018 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 SUPERFAMILY SSF52335 938 1076 1.31E-36 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 387 405 1.1E-66 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 246 263 1.1E-66 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 1.1E-66 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 211 230 1.1E-66 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 175 187 1.1E-66 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 1.1E-66 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 304 333 1.1E-66 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1073 13.477 T 12-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 Gene3D G3DSA:3.30.470.20 667 937 1.9E-120 T 12-10-2018 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 SMART SM01096 426 549 2.4E-75 T 12-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 SUPERFAMILY SSF52440 558 677 3.45E-49 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 Gene3D G3DSA:1.10.1030.10 410 555 1.5E-49 T 12-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 711 725 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 Pfam PF02142 MGS-like domain 958 1043 2.6E-19 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1054 0.0 T 12-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 171 185 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 304 311 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1065 13.193 T 12-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 SUPERFAMILY SSF52440 1 127 3.02E-49 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 840 847 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 429 549 2.2E-42 T 12-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_0889 cc7101e2231dc6b91252ec2660ba9bc1 1080 SUPERFAMILY SSF56059 675 935 2.31E-104 T 12-10-2018 ALFP_0769 46f56b62a5b5d8fda3b4a2415e052fd6 178 SUPERFAMILY SSF52499 3 178 3.53E-40 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_0769 46f56b62a5b5d8fda3b4a2415e052fd6 178 Gene3D G3DSA:3.40.50.850 1 178 2.6E-45 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_0769 46f56b62a5b5d8fda3b4a2415e052fd6 178 Pfam PF00857 Isochorismatase family 11 148 6.6E-26 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 ALFP_1909 73382642d2fc30b0afeae3a9387165c1 479 Gene3D G3DSA:3.40.605.10 12 458 2.4E-161 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_1909 73382642d2fc30b0afeae3a9387165c1 479 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 263 274 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 ALFP_1909 73382642d2fc30b0afeae3a9387165c1 479 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 235 242 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 ALFP_1909 73382642d2fc30b0afeae3a9387165c1 479 Gene3D G3DSA:3.40.309.10 242 430 2.4E-161 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_1909 73382642d2fc30b0afeae3a9387165c1 479 SUPERFAMILY SSF53720 1 461 2.36E-151 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_1909 73382642d2fc30b0afeae3a9387165c1 479 Pfam PF00171 Aldehyde dehydrogenase family 11 458 1.9E-150 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_0822 4e46487c9798fc17d413dc9f3097f256 263 SMART SM00650 20 188 2.3E-75 T 12-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 ALFP_0822 4e46487c9798fc17d413dc9f3097f256 263 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 36 63 - T 12-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 ALFP_0822 4e46487c9798fc17d413dc9f3097f256 263 Gene3D G3DSA:3.40.50.150 1 187 3.8E-61 T 12-10-2018 ALFP_0822 4e46487c9798fc17d413dc9f3097f256 263 Gene3D G3DSA:1.10.8.100 193 259 2.3E-18 T 12-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 ALFP_0822 4e46487c9798fc17d413dc9f3097f256 263 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 4 255 52.21 T 12-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 ALFP_0822 4e46487c9798fc17d413dc9f3097f256 263 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 5 253 1.3E-78 T 12-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 ALFP_0822 4e46487c9798fc17d413dc9f3097f256 263 SUPERFAMILY SSF53335 4 256 1.93E-66 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_0822 4e46487c9798fc17d413dc9f3097f256 263 Pfam PF00398 Ribosomal RNA adenine dimethylase 4 250 2.5E-58 T 12-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm ALFP_2169 a5ff32546752f7d1c8b8a24f4b2860d0 343 Gene3D G3DSA:3.40.50.2300 90 333 7.6E-37 T 12-10-2018 ALFP_2169 a5ff32546752f7d1c8b8a24f4b2860d0 343 SUPERFAMILY SSF53822 65 337 2.31E-36 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_2169 a5ff32546752f7d1c8b8a24f4b2860d0 343 SMART SM00354 5 75 3.9E-7 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 ALFP_2169 a5ff32546752f7d1c8b8a24f4b2860d0 343 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 7 17 6.3E-5 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 ALFP_2169 a5ff32546752f7d1c8b8a24f4b2860d0 343 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 17 27 6.3E-5 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 ALFP_2169 a5ff32546752f7d1c8b8a24f4b2860d0 343 Gene3D G3DSA:3.40.50.2300 169 342 7.6E-37 T 12-10-2018 ALFP_2169 a5ff32546752f7d1c8b8a24f4b2860d0 343 SUPERFAMILY SSF47413 4 53 1.37E-12 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_2169 a5ff32546752f7d1c8b8a24f4b2860d0 343 Pfam PF13407 Periplasmic binding protein domain 122 317 9.9E-30 T 12-10-2018 IPR025997 Periplasmic binding protein ALFP_2169 a5ff32546752f7d1c8b8a24f4b2860d0 343 Gene3D G3DSA:1.10.260.40 2 49 4.8E-16 T 12-10-2018 ALFP_2169 a5ff32546752f7d1c8b8a24f4b2860d0 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 50 8.7E-14 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 ALFP_2169 a5ff32546752f7d1c8b8a24f4b2860d0 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 12-10-2018 ALFP_0208 1f8ccff573b28b0b1912d34095a7436d 851 Pfam PF00990 Diguanylate cyclase, GGDEF domain 418 580 5.4E-44 T 12-10-2018 IPR000160 GGDEF domain ALFP_0208 1f8ccff573b28b0b1912d34095a7436d 851 SMART SM00267 406 584 8.5E-52 T 12-10-2018 IPR000160 GGDEF domain ALFP_0208 1f8ccff573b28b0b1912d34095a7436d 851 SMART SM00052 594 836 1.5E-91 T 12-10-2018 IPR001633 EAL domain ALFP_0208 1f8ccff573b28b0b1912d34095a7436d 851 SMART SM00062 22 237 1.2E-13 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_0208 1f8ccff573b28b0b1912d34095a7436d 851 Gene3D G3DSA:3.40.190.10 31 230 1.1E-28 T 12-10-2018 ALFP_0208 1f8ccff573b28b0b1912d34095a7436d 851 Pfam PF00563 EAL domain 601 831 8.7E-65 T 12-10-2018 IPR001633 EAL domain ALFP_0208 1f8ccff573b28b0b1912d34095a7436d 851 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 229 2.3E-22 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_0208 1f8ccff573b28b0b1912d34095a7436d 851 Gene3D G3DSA:3.30.70.270 416 597 7.2E-56 T 12-10-2018 ALFP_0208 1f8ccff573b28b0b1912d34095a7436d 851 Gene3D G3DSA:3.20.20.450 598 848 1.9E-84 T 12-10-2018 IPR035919 EAL domain superfamily ALFP_0208 1f8ccff573b28b0b1912d34095a7436d 851 SUPERFAMILY SSF53850 23 242 3.11E-32 T 12-10-2018 ALFP_0208 1f8ccff573b28b0b1912d34095a7436d 851 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 417 583 3.1E-37 T 12-10-2018 IPR000160 GGDEF domain ALFP_0208 1f8ccff573b28b0b1912d34095a7436d 851 Pfam PF08448 PAS fold 297 408 2.1E-11 T 12-10-2018 IPR013656 PAS fold-4 ALFP_0208 1f8ccff573b28b0b1912d34095a7436d 851 SUPERFAMILY SSF55073 423 586 1.02E-44 T 12-10-2018 IPR029787 Nucleotide cyclase ALFP_0208 1f8ccff573b28b0b1912d34095a7436d 851 Gene3D G3DSA:3.40.190.10 107 200 1.1E-28 T 12-10-2018 ALFP_0208 1f8ccff573b28b0b1912d34095a7436d 851 SUPERFAMILY SSF55785 279 400 1.22E-13 T 12-10-2018 IPR035965 PAS domain superfamily ALFP_0208 1f8ccff573b28b0b1912d34095a7436d 851 SUPERFAMILY SSF141868 600 843 1.7E-80 T 12-10-2018 IPR035919 EAL domain superfamily ALFP_0208 1f8ccff573b28b0b1912d34095a7436d 851 Gene3D G3DSA:3.30.450.20 277 415 8.0E-15 T 12-10-2018 ALFP_2965 c5b67d66a7d387d14b2685a70b5f2a8f 241 Gene3D G3DSA:3.30.420.10 1 178 3.0E-51 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 ALFP_2965 c5b67d66a7d387d14b2685a70b5f2a8f 241 SMART SM00479 2 174 3.9E-43 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III ALFP_2965 c5b67d66a7d387d14b2685a70b5f2a8f 241 Pfam PF00929 Exonuclease 4 163 2.0E-28 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III ALFP_2965 c5b67d66a7d387d14b2685a70b5f2a8f 241 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 2 232 7.1E-84 T 12-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_2965 c5b67d66a7d387d14b2685a70b5f2a8f 241 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 5 214 2.0E-54 T 12-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_2965 c5b67d66a7d387d14b2685a70b5f2a8f 241 SUPERFAMILY SSF53098 1 174 3.04E-49 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily ALFP_1053 5b2478cc92bcc2d8d5fb6392dd0f597b 782 Gene3D G3DSA:3.30.420.140 338 465 3.8E-149 T 12-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 ALFP_1053 5b2478cc92bcc2d8d5fb6392dd0f597b 782 SUPERFAMILY SSF53098 335 483 1.9E-52 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily ALFP_1053 5b2478cc92bcc2d8d5fb6392dd0f597b 782 Pfam PF12836 Helix-hairpin-helix motif 505 569 8.0E-27 T 12-10-2018 ALFP_1053 5b2478cc92bcc2d8d5fb6392dd0f597b 782 Gene3D G3DSA:1.10.3500.10 122 512 3.8E-149 T 12-10-2018 IPR023323 Tex-like domain superfamily ALFP_1053 5b2478cc92bcc2d8d5fb6392dd0f597b 782 SMART SM00732 339 438 1.4E-34 T 12-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 ALFP_1053 5b2478cc92bcc2d8d5fb6392dd0f597b 782 Gene3D G3DSA:1.10.10.650 9 119 7.1E-37 T 12-10-2018 IPR023319 Tex-like protein, HTH domain superfamily ALFP_1053 5b2478cc92bcc2d8d5fb6392dd0f597b 782 SMART SM00316 663 734 8.4E-25 T 12-10-2018 IPR022967 RNA-binding domain, S1 ALFP_1053 5b2478cc92bcc2d8d5fb6392dd0f597b 782 Pfam PF16921 Tex protein YqgF-like domain 339 465 2.1E-51 T 12-10-2018 IPR032639 Tex protein, YqgF-like domain ALFP_1053 5b2478cc92bcc2d8d5fb6392dd0f597b 782 Gene3D G3DSA:2.40.50.140 645 738 8.3E-29 T 12-10-2018 ALFP_1053 5b2478cc92bcc2d8d5fb6392dd0f597b 782 SUPERFAMILY SSF47781 575 646 2.89E-18 T 12-10-2018 IPR010994 RuvA domain 2-like ALFP_1053 5b2478cc92bcc2d8d5fb6392dd0f597b 782 SUPERFAMILY SSF50249 652 737 1.86E-24 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_1053 5b2478cc92bcc2d8d5fb6392dd0f597b 782 Gene3D G3DSA:1.10.150.310 513 644 2.5E-48 T 12-10-2018 ALFP_1053 5b2478cc92bcc2d8d5fb6392dd0f597b 782 SUPERFAMILY SSF158832 12 334 1.02E-108 T 12-10-2018 ALFP_1053 5b2478cc92bcc2d8d5fb6392dd0f597b 782 SUPERFAMILY SSF47781 484 571 8.67E-28 T 12-10-2018 IPR010994 RuvA domain 2-like ALFP_1053 5b2478cc92bcc2d8d5fb6392dd0f597b 782 Pfam PF00575 S1 RNA binding domain 664 734 1.4E-21 T 12-10-2018 IPR003029 S1 domain GO:0003676 ALFP_1053 5b2478cc92bcc2d8d5fb6392dd0f597b 782 Pfam PF09371 Tex-like protein N-terminal domain 19 203 3.2E-66 T 12-10-2018 IPR018974 Tex-like protein, N-terminal ALFP_0918 3438774ec5de82008ce555a047216b1b 164 Pfam PF04239 Protein of unknown function (DUF421) 104 161 1.2E-12 T 12-10-2018 IPR007353 Protein of unknown function DUF421 ALFP_0918 3438774ec5de82008ce555a047216b1b 164 Gene3D G3DSA:3.30.240.20 92 163 1.5E-18 T 12-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily ALFP_0116 eaf9aa0b8b991e6da9f79325b43cf31c 300 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 108 277 3.8E-34 T 12-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 ALFP_0116 eaf9aa0b8b991e6da9f79325b43cf31c 300 PIRSF PIRSF006250 1 282 3.5E-58 T 12-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 ALFP_0116 eaf9aa0b8b991e6da9f79325b43cf31c 300 SUPERFAMILY SSF54675 4 106 5.89E-18 T 12-10-2018 ALFP_0116 eaf9aa0b8b991e6da9f79325b43cf31c 300 SUPERFAMILY SSF51690 108 279 3.45E-42 T 12-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 ALFP_0116 eaf9aa0b8b991e6da9f79325b43cf31c 300 Gene3D G3DSA:3.90.1170.20 10 275 1.3E-68 T 12-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 ALFP_0116 eaf9aa0b8b991e6da9f79325b43cf31c 300 Gene3D G3DSA:3.20.20.70 123 270 1.3E-68 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0116 eaf9aa0b8b991e6da9f79325b43cf31c 300 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 20 105 1.1E-15 T 12-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 ALFP_0116 eaf9aa0b8b991e6da9f79325b43cf31c 300 TIGRFAM TIGR01334 modD: modD protein 3 279 3.0E-67 T 12-10-2018 IPR006242 Putative pyrophosphorylase ModD GO:0016763 ALFP_2207 950485136c54a4f12fa9855c9ac27c3f 322 Pfam PF02625 XdhC and CoxI family 12 67 8.4E-10 T 12-10-2018 IPR003777 XdhC- CoxI ALFP_2207 950485136c54a4f12fa9855c9ac27c3f 322 Gene3D G3DSA:3.40.50.720 167 315 3.1E-36 T 12-10-2018 ALFP_2207 950485136c54a4f12fa9855c9ac27c3f 322 Pfam PF13478 XdhC Rossmann domain 169 310 6.5E-37 T 12-10-2018 IPR027051 XdhC Rossmann domain ALFP_2207 950485136c54a4f12fa9855c9ac27c3f 322 TIGRFAM TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC 19 311 4.3E-91 T 12-10-2018 IPR014308 Xanthine dehydrogenase accessory protein XdhC ALFP_2418 a3bc71a73c17e5bbfe6ce23d836c2380 263 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 8 114 5.2E-9 T 12-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 ALFP_2418 a3bc71a73c17e5bbfe6ce23d836c2380 263 Hamap MF_01265 Probable L-aspartate dehydrogenase [nadX]. 1 263 31.882 T 12-10-2018 IPR020626 L-aspartate dehydrogenase, prokaryotic GO:0009435|GO:0033735|GO:0055114 KEGG: 00760+1.4.1.21 ALFP_2418 a3bc71a73c17e5bbfe6ce23d836c2380 263 Gene3D G3DSA:3.30.360.10 120 238 5.8E-65 T 12-10-2018 ALFP_2418 a3bc71a73c17e5bbfe6ce23d836c2380 263 SUPERFAMILY SSF55347 120 233 1.63E-32 T 12-10-2018 ALFP_2418 a3bc71a73c17e5bbfe6ce23d836c2380 263 SUPERFAMILY SSF51735 1 149 1.83E-15 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2418 a3bc71a73c17e5bbfe6ce23d836c2380 263 Pfam PF01958 Domain of unknown function DUF108 164 251 1.9E-34 T 12-10-2018 IPR002811 Aspartate dehydrogenase GO:0006742|GO:0016491|GO:0019363|GO:0055114 KEGG: 00760+1.4.1.21 ALFP_2418 a3bc71a73c17e5bbfe6ce23d836c2380 263 PIRSF PIRSF005227 1 263 1.9E-69 T 12-10-2018 IPR011182 L-aspartate dehydrogenase GO:0009435|GO:0033735|GO:0055114 KEGG: 00760+1.4.1.21 ALFP_2418 a3bc71a73c17e5bbfe6ce23d836c2380 263 Gene3D G3DSA:3.40.50.720 4 254 5.8E-65 T 12-10-2018 ALFP_0826 edb406ba806eb6407db84b921048101e 249 SUPERFAMILY SSF69593 6 240 3.4E-42 T 12-10-2018 ALFP_0826 edb406ba806eb6407db84b921048101e 249 Pfam PF01553 Acyltransferase 61 183 1.2E-18 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 ALFP_0826 edb406ba806eb6407db84b921048101e 249 SMART SM00563 71 186 6.6E-33 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 ALFP_2717 9f59e247356a4308a81d99be6dd2abe3 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 130 4.8E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2717 9f59e247356a4308a81d99be6dd2abe3 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 69 80 4.8E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2717 9f59e247356a4308a81d99be6dd2abe3 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 161 4.8E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2717 9f59e247356a4308a81d99be6dd2abe3 235 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 1 234 6.5E-104 T 12-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 ALFP_2717 9f59e247356a4308a81d99be6dd2abe3 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 196 216 5.4E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2717 9f59e247356a4308a81d99be6dd2abe3 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 161 5.4E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2717 9f59e247356a4308a81d99be6dd2abe3 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 180 5.4E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2717 9f59e247356a4308a81d99be6dd2abe3 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 5.4E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2717 9f59e247356a4308a81d99be6dd2abe3 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 116 132 5.4E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2717 9f59e247356a4308a81d99be6dd2abe3 235 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 3 233 4.5E-59 T 12-10-2018 ALFP_2717 9f59e247356a4308a81d99be6dd2abe3 235 SUPERFAMILY SSF51735 2 234 9.62E-72 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2717 9f59e247356a4308a81d99be6dd2abe3 235 Gene3D G3DSA:3.40.50.720 1 234 3.3E-74 T 12-10-2018 ALFP_2717 9f59e247356a4308a81d99be6dd2abe3 235 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 129 157 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_2717 9f59e247356a4308a81d99be6dd2abe3 235 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1 173 0.0014 T 12-10-2018 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 696 0.0 T 12-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 SMART SM00316 625 695 3.1E-23 T 12-10-2018 IPR022967 RNA-binding domain, S1 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 325 1.4E-17 T 12-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 SUPERFAMILY SSF54211 2 144 3.64E-51 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 Gene3D G3DSA:3.30.1370.10 555 626 1.1E-21 T 12-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 Pfam PF00575 S1 RNA binding domain 624 695 8.8E-17 T 12-10-2018 IPR003029 S1 domain GO:0003676 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 SMART SM00322 557 622 1.4E-13 T 12-10-2018 IPR004087 K Homology domain GO:0003676 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 Gene3D G3DSA:3.30.230.70 233 554 3.1E-117 T 12-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 Pfam PF03725 3' exoribonuclease family, domain 2 466 534 2.4E-5 T 12-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 Pfam PF03725 3' exoribonuclease family, domain 2 147 210 6.4E-13 T 12-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 SUPERFAMILY SSF55666 145 235 3.93E-30 T 12-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 Gene3D G3DSA:2.40.50.140 627 698 1.2E-25 T 12-10-2018 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 SUPERFAMILY SSF55666 455 554 5.89E-29 T 12-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 Pfam PF01138 3' exoribonuclease family, domain 1 329 461 7.1E-23 T 12-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 Pfam PF01138 3' exoribonuclease family, domain 1 16 144 5.4E-22 T 12-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 SUPERFAMILY SSF54791 560 644 6.45E-22 T 12-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 PIRSF PIRSF005499 1 708 5.9E-296 T 12-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 SUPERFAMILY SSF46915 238 326 7.06E-17 T 12-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 SUPERFAMILY SSF50249 618 696 1.56E-18 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 698 30.145 T 12-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 SUPERFAMILY SSF54211 298 493 5.57E-48 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 Pfam PF00013 KH domain 562 619 4.7E-11 T 12-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 ALFP_2597 af9771084a9905f7e03def42ed8ebbed 712 Gene3D G3DSA:3.30.230.70 1 229 9.6E-84 T 12-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 ALFP_2846 803db23291a654ddead61be2eefa8b30 154 Gene3D G3DSA:3.30.1330.60 34 154 3.9E-34 T 12-10-2018 IPR036737 OmpA-like domain superfamily ALFP_2846 803db23291a654ddead61be2eefa8b30 154 Pfam PF00691 OmpA family 51 146 1.1E-18 T 12-10-2018 IPR006665 OmpA-like domain ALFP_2846 803db23291a654ddead61be2eefa8b30 154 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 49 152 1.9E-39 T 12-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 ALFP_2846 803db23291a654ddead61be2eefa8b30 154 PRINTS PR01021 OMPA domain signature 52 74 1.0E-11 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 ALFP_2846 803db23291a654ddead61be2eefa8b30 154 PRINTS PR01021 OMPA domain signature 97 113 1.0E-11 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 ALFP_2846 803db23291a654ddead61be2eefa8b30 154 PRINTS PR01021 OMPA domain signature 82 97 1.0E-11 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 ALFP_2846 803db23291a654ddead61be2eefa8b30 154 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 1 152 26.055 T 12-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 ALFP_2846 803db23291a654ddead61be2eefa8b30 154 SUPERFAMILY SSF103088 44 151 4.32E-31 T 12-10-2018 IPR036737 OmpA-like domain superfamily ALFP_1992 73ef47dd5d6e1ae4d4803f2db096011d 117 SMART SM00418 15 92 1.2E-9 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_1992 73ef47dd5d6e1ae4d4803f2db096011d 117 SUPERFAMILY SSF46785 3 91 2.08E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1992 73ef47dd5d6e1ae4d4803f2db096011d 117 Pfam PF12840 Helix-turn-helix domain 15 72 6.1E-10 T 12-10-2018 ALFP_1992 73ef47dd5d6e1ae4d4803f2db096011d 117 Gene3D G3DSA:1.10.10.10 2 92 1.6E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1992 73ef47dd5d6e1ae4d4803f2db096011d 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 17 32 1.4E-6 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_1992 73ef47dd5d6e1ae4d4803f2db096011d 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 48 63 1.4E-6 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_1992 73ef47dd5d6e1ae4d4803f2db096011d 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 63 78 1.4E-6 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_3226 ae7fee5d813921a37d1a37f56990ae98 566 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 19 557 7.3E-152 T 12-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 ALFP_3226 ae7fee5d813921a37d1a37f56990ae98 566 Pfam PF00005 ABC transporter 374 516 9.9E-20 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3226 ae7fee5d813921a37d1a37f56990ae98 566 SUPERFAMILY SSF52540 356 564 3.32E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3226 ae7fee5d813921a37d1a37f56990ae98 566 SUPERFAMILY SSF90123 11 321 1.02E-40 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_3226 ae7fee5d813921a37d1a37f56990ae98 566 Pfam PF00664 ABC transporter transmembrane region 26 266 2.4E-27 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 ALFP_3226 ae7fee5d813921a37d1a37f56990ae98 566 ProSitePatterns PS00211 ABC transporters family signature. 489 503 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3226 ae7fee5d813921a37d1a37f56990ae98 566 SMART SM00382 378 564 5.3E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3226 ae7fee5d813921a37d1a37f56990ae98 566 Gene3D G3DSA:3.40.50.300 363 566 1.2E-48 T 12-10-2018 ALFP_3226 ae7fee5d813921a37d1a37f56990ae98 566 Gene3D G3DSA:1.20.1560.10 3 326 6.2E-37 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_1963 51b4fa7d953601e46944d42ae4cbfdd8 377 Gene3D G3DSA:2.160.10.10 121 332 4.3E-60 T 12-10-2018 ALFP_1963 51b4fa7d953601e46944d42ae4cbfdd8 377 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 38 107 1.9E-16 T 12-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 ALFP_1963 51b4fa7d953601e46944d42ae4cbfdd8 377 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 223 241 0.14 T 12-10-2018 IPR001451 Hexapeptide repeat ALFP_1963 51b4fa7d953601e46944d42ae4cbfdd8 377 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 286 317 0.19 T 12-10-2018 IPR001451 Hexapeptide repeat ALFP_1963 51b4fa7d953601e46944d42ae4cbfdd8 377 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 9 351 35.071 T 12-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 ALFP_1963 51b4fa7d953601e46944d42ae4cbfdd8 377 SUPERFAMILY SSF51161 49 341 4.25E-76 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily ALFP_1963 51b4fa7d953601e46944d42ae4cbfdd8 377 Gene3D G3DSA:3.40.1390.10 8 116 9.8E-15 T 12-10-2018 ALFP_1963 51b4fa7d953601e46944d42ae4cbfdd8 377 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 39 354 3.8E-102 T 12-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 ALFP_1963 51b4fa7d953601e46944d42ae4cbfdd8 377 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 167 200 1.8E-6 T 12-10-2018 IPR001451 Hexapeptide repeat ALFP_1963 51b4fa7d953601e46944d42ae4cbfdd8 377 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 130 164 1.9E-9 T 12-10-2018 IPR001451 Hexapeptide repeat ALFP_1963 51b4fa7d953601e46944d42ae4cbfdd8 377 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 247 282 5.7E-4 T 12-10-2018 IPR001451 Hexapeptide repeat ALFP_0076 83d0aff58e197f7aad8b753a2e537dfa 445 Gene3D G3DSA:3.90.380.10 21 434 2.9E-99 T 12-10-2018 ALFP_0076 83d0aff58e197f7aad8b753a2e537dfa 445 Pfam PF00355 Rieske [2Fe-2S] domain 43 127 8.8E-19 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ALFP_0076 83d0aff58e197f7aad8b753a2e537dfa 445 SUPERFAMILY SSF55961 163 439 5.26E-58 T 12-10-2018 ALFP_0076 83d0aff58e197f7aad8b753a2e537dfa 445 Gene3D G3DSA:2.102.10.10 41 172 2.9E-99 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_0076 83d0aff58e197f7aad8b753a2e537dfa 445 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 198 394 1.0E-11 T 12-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 ALFP_0076 83d0aff58e197f7aad8b753a2e537dfa 445 SUPERFAMILY SSF50022 14 162 1.57E-41 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_0076 83d0aff58e197f7aad8b753a2e537dfa 445 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 28 53 7.9E-32 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_0076 83d0aff58e197f7aad8b753a2e537dfa 445 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 101 121 7.9E-32 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_0076 83d0aff58e197f7aad8b753a2e537dfa 445 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 58 73 7.9E-32 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_0076 83d0aff58e197f7aad8b753a2e537dfa 445 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 147 173 7.9E-32 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_0076 83d0aff58e197f7aad8b753a2e537dfa 445 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 189 211 7.9E-32 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_0076 83d0aff58e197f7aad8b753a2e537dfa 445 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 79 99 7.9E-32 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_1987 120c9d22b773c4d63c12a68d0964a6ac 207 SUPERFAMILY SSF52172 8 157 4.55E-37 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_1987 120c9d22b773c4d63c12a68d0964a6ac 207 Gene3D G3DSA:1.10.10.10 135 204 5.7E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1987 120c9d22b773c4d63c12a68d0964a6ac 207 SMART SM00421 143 200 5.4E-20 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_1987 120c9d22b773c4d63c12a68d0964a6ac 207 ProSitePatterns PS00622 LuxR-type HTH domain signature. 160 187 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_1987 120c9d22b773c4d63c12a68d0964a6ac 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 199 2.1E-19 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_1987 120c9d22b773c4d63c12a68d0964a6ac 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 5.7E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_1987 120c9d22b773c4d63c12a68d0964a6ac 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 5.7E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_1987 120c9d22b773c4d63c12a68d0964a6ac 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 5.7E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_1987 120c9d22b773c4d63c12a68d0964a6ac 207 Gene3D G3DSA:3.40.50.2300 4 134 1.1E-49 T 12-10-2018 ALFP_1987 120c9d22b773c4d63c12a68d0964a6ac 207 Pfam PF00072 Response regulator receiver domain 10 119 2.4E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_1987 120c9d22b773c4d63c12a68d0964a6ac 207 SMART SM00448 8 119 3.0E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_1987 120c9d22b773c4d63c12a68d0964a6ac 207 SUPERFAMILY SSF46894 138 200 8.08E-17 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ALFP_1636 f08cbc8e71c8e8e41bc1d6140b2c4a2d 149 Pfam PF03692 Putative zinc- or iron-chelating domain 26 109 5.4E-8 T 12-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein ALFP_0446 bb855488ad17a6f81d840a93b3c194a2 80 TIGRFAM TIGR04359 TrbK_RP4: entry exclusion lipoprotein TrbK 7 73 2.3E-17 T 12-10-2018 IPR027584 Entry exclusion lipoprotein TrbK ALFP_3058 d0f31121f47c071ab038ce95e5360523 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 267 7.7E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_3058 d0f31121f47c071ab038ce95e5360523 282 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 19 267 2.2E-81 T 12-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 ALFP_3058 d0f31121f47c071ab038ce95e5360523 282 SUPERFAMILY SSF161098 72 261 8.11E-34 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3058 d0f31121f47c071ab038ce95e5360523 282 Gene3D G3DSA:1.10.3720.10 68 266 1.7E-33 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0981 559bc0e3ea4c281d558785584577d73a 417 Gene3D G3DSA:3.30.70.260 270 348 3.4E-53 T 12-10-2018 ALFP_0981 559bc0e3ea4c281d558785584577d73a 417 PIRSF PIRSF000726 58 417 7.3E-133 T 12-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 ALFP_0981 559bc0e3ea4c281d558785584577d73a 417 PIRSF PIRSF000726 1 60 1.4E-20 T 12-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 ALFP_0981 559bc0e3ea4c281d558785584577d73a 417 Gene3D G3DSA:3.30.70.260 264 413 3.4E-53 T 12-10-2018 ALFP_0981 559bc0e3ea4c281d558785584577d73a 417 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 12-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 ALFP_0981 559bc0e3ea4c281d558785584577d73a 417 SUPERFAMILY SSF53633 4 250 2.62E-74 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily ALFP_0981 559bc0e3ea4c281d558785584577d73a 417 Pfam PF00696 Amino acid kinase family 3 229 7.7E-50 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 ALFP_0981 559bc0e3ea4c281d558785584577d73a 417 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 413 1.4E-124 T 12-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 ALFP_0981 559bc0e3ea4c281d558785584577d73a 417 Pfam PF13840 ACT domain 348 409 4.2E-14 T 12-10-2018 IPR027795 CASTOR, ACT domain ALFP_0981 559bc0e3ea4c281d558785584577d73a 417 SUPERFAMILY SSF55021 261 357 3.67E-17 T 12-10-2018 ALFP_0981 559bc0e3ea4c281d558785584577d73a 417 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 412 1.4E-109 T 12-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 ALFP_0981 559bc0e3ea4c281d558785584577d73a 417 SUPERFAMILY SSF55021 341 414 8.02E-23 T 12-10-2018 ALFP_0981 559bc0e3ea4c281d558785584577d73a 417 Gene3D G3DSA:3.40.1160.10 1 263 3.8E-87 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily ALFP_2540 fc1fedc963a8f52ea9b3d68d231dde59 302 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 10 300 6.0E-80 T 12-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_2540 fc1fedc963a8f52ea9b3d68d231dde59 302 SUPERFAMILY SSF55174 12 64 3.68E-8 T 12-10-2018 ALFP_2540 fc1fedc963a8f52ea9b3d68d231dde59 302 SUPERFAMILY SSF55120 80 300 2.24E-65 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_2540 fc1fedc963a8f52ea9b3d68d231dde59 302 Pfam PF00849 RNA pseudouridylate synthase 88 237 1.4E-29 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_2540 fc1fedc963a8f52ea9b3d68d231dde59 302 Gene3D G3DSA:3.10.290.10 3 64 6.0E-14 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 ALFP_2540 fc1fedc963a8f52ea9b3d68d231dde59 302 SMART SM00363 13 72 1.0E-7 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_2540 fc1fedc963a8f52ea9b3d68d231dde59 302 Gene3D G3DSA:3.30.2350.10 81 302 1.1E-75 T 12-10-2018 ALFP_2540 fc1fedc963a8f52ea9b3d68d231dde59 302 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 127 141 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_2540 fc1fedc963a8f52ea9b3d68d231dde59 302 Pfam PF01479 S4 domain 13 59 1.3E-7 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_1330 fdceb80290e338def768d87b27d10a09 205 Pfam PF02630 SCO1/SenC 44 182 2.8E-40 T 12-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_1330 fdceb80290e338def768d87b27d10a09 205 SUPERFAMILY SSF52833 46 201 6.16E-50 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_1330 fdceb80290e338def768d87b27d10a09 205 Gene3D G3DSA:3.40.30.10 41 201 3.5E-51 T 12-10-2018 ALFP_3138 d5135af8d0929e6cdcb6c842e8b1588d 124 SMART SM00530 7 61 3.2E-16 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_3138 d5135af8d0929e6cdcb6c842e8b1588d 124 SUPERFAMILY SSF47413 2 68 2.2E-16 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_3138 d5135af8d0929e6cdcb6c842e8b1588d 124 Pfam PF01381 Helix-turn-helix 8 61 2.1E-13 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_3138 d5135af8d0929e6cdcb6c842e8b1588d 124 Gene3D G3DSA:1.10.260.40 1 69 9.5E-22 T 12-10-2018 ALFP_3611 8b4e90635f4b0376d88dd8c6f4e8b8cd 181 SMART SM00903 28 177 1.2E-42 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 ALFP_3611 8b4e90635f4b0376d88dd8c6f4e8b8cd 181 SUPERFAMILY SSF50475 20 178 1.42E-39 T 12-10-2018 ALFP_3611 8b4e90635f4b0376d88dd8c6f4e8b8cd 181 Gene3D G3DSA:2.30.110.10 10 180 9.3E-42 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 ALFP_3611 8b4e90635f4b0376d88dd8c6f4e8b8cd 181 Pfam PF01613 Flavin reductase like domain 28 176 4.7E-30 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 ALFP_1917 3cab0ae55d691786697f123d7f705149 240 Pfam PF04199 Putative cyclase 29 173 1.2E-30 T 12-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 ALFP_1917 3cab0ae55d691786697f123d7f705149 240 Gene3D G3DSA:3.50.30.50 5 238 9.1E-42 T 12-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 ALFP_1917 3cab0ae55d691786697f123d7f705149 240 SUPERFAMILY SSF102198 25 237 4.05E-39 T 12-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 ALFP_2108 7e0b5f44efa5301a40f6d0c7e94ff26a 229 SMART SM00448 1 112 2.1E-35 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2108 7e0b5f44efa5301a40f6d0c7e94ff26a 229 Gene3D G3DSA:1.10.10.10 123 227 1.1E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2108 7e0b5f44efa5301a40f6d0c7e94ff26a 229 Gene3D G3DSA:3.40.50.2300 1 121 5.5E-39 T 12-10-2018 ALFP_2108 7e0b5f44efa5301a40f6d0c7e94ff26a 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 218 9.7E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_2108 7e0b5f44efa5301a40f6d0c7e94ff26a 229 SUPERFAMILY SSF52172 1 173 4.39E-36 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_2108 7e0b5f44efa5301a40f6d0c7e94ff26a 229 SMART SM00862 145 218 1.2E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_2108 7e0b5f44efa5301a40f6d0c7e94ff26a 229 Pfam PF00072 Response regulator receiver domain 3 112 1.3E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 SMART SM00448 649 765 2.6E-32 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 SUPERFAMILY SSF47384 388 470 1.45E-21 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 Pfam PF01627 Hpt domain 834 887 9.0E-6 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 SUPERFAMILY SSF55785 280 394 3.32E-25 T 12-10-2018 IPR035965 PAS domain superfamily ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 Gene3D G3DSA:3.40.50.12740 648 789 6.0E-35 T 12-10-2018 ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 SUPERFAMILY SSF55874 459 632 6.55E-47 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 265 384 2.2E-27 T 12-10-2018 IPR000014 PAS domain ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 517 629 6.2E-30 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 Gene3D G3DSA:1.10.287.130 384 468 6.4E-27 T 12-10-2018 ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 PRINTS PR00344 Bacterial sensor protein C-terminal signature 573 583 9.0E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 PRINTS PR00344 Bacterial sensor protein C-terminal signature 590 608 9.0E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 PRINTS PR00344 Bacterial sensor protein C-terminal signature 555 569 9.0E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 PRINTS PR00344 Bacterial sensor protein C-terminal signature 614 627 9.0E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 SUPERFAMILY SSF47226 748 886 2.62E-11 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 Pfam PF00989 PAS fold 270 382 2.4E-18 T 12-10-2018 IPR013767 PAS fold GO:0006355 ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 SMART SM00388 405 470 3.7E-21 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 Gene3D G3DSA:3.30.450.20 265 383 1.4E-32 T 12-10-2018 ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 SUPERFAMILY SSF52172 647 771 4.98E-32 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 Gene3D G3DSA:1.20.120.160 790 894 8.2E-8 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 Gene3D G3DSA:3.30.565.10 469 631 2.3E-50 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 Pfam PF00512 His Kinase A (phospho-acceptor) domain 405 470 6.5E-17 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 SMART SM00091 269 335 1.0E-13 T 12-10-2018 IPR000014 PAS domain ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 SMART SM00387 517 630 6.3E-39 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 Pfam PF00072 Response regulator receiver domain 651 765 8.1E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 Pfam PF03707 Bacterial signalling protein N terminal repeat 69 126 1.3E-17 T 12-10-2018 IPR005330 MHYT domain ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 Pfam PF03707 Bacterial signalling protein N terminal repeat 199 246 1.9E-8 T 12-10-2018 IPR005330 MHYT domain ALFP_1353 9d818ef4fcaadcbb2246b290ea8155ab 988 Pfam PF03707 Bacterial signalling protein N terminal repeat 132 188 2.5E-14 T 12-10-2018 IPR005330 MHYT domain ALFP_3296 40b590eebab7e927697d8b7ca02a8a5f 179 SUPERFAMILY SSF47928 3 107 1.7E-21 T 12-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3296 40b590eebab7e927697d8b7ca02a8a5f 179 Gene3D G3DSA:1.10.520.20 2 108 2.3E-26 T 12-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3296 40b590eebab7e927697d8b7ca02a8a5f 179 PRINTS PR00125 ATP synthase delta subunit signature 137 152 2.5E-21 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3296 40b590eebab7e927697d8b7ca02a8a5f 179 PRINTS PR00125 ATP synthase delta subunit signature 87 101 2.5E-21 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3296 40b590eebab7e927697d8b7ca02a8a5f 179 PRINTS PR00125 ATP synthase delta subunit signature 7 26 2.5E-21 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3296 40b590eebab7e927697d8b7ca02a8a5f 179 PRINTS PR00125 ATP synthase delta subunit signature 152 170 2.5E-21 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3296 40b590eebab7e927697d8b7ca02a8a5f 179 PRINTS PR00125 ATP synthase delta subunit signature 76 87 2.5E-21 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3296 40b590eebab7e927697d8b7ca02a8a5f 179 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 177 4.6E-46 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3296 40b590eebab7e927697d8b7ca02a8a5f 179 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 179 19.139 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3296 40b590eebab7e927697d8b7ca02a8a5f 179 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 177 1.3E-36 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_0257 f41a2d129dabd1fb6deba24b10f9d4aa 334 PIRSF PIRSF005963 2 333 5.9E-127 T 12-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 ALFP_0257 f41a2d129dabd1fb6deba24b10f9d4aa 334 SUPERFAMILY SSF102114 64 329 1.83E-66 T 12-10-2018 ALFP_0257 f41a2d129dabd1fb6deba24b10f9d4aa 334 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 27 85 2.4E-6 T 12-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 ALFP_0257 f41a2d129dabd1fb6deba24b10f9d4aa 334 Hamap MF_00206 Lipoyl synthase [lipA]. 48 334 151.82 T 12-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 ALFP_0257 f41a2d129dabd1fb6deba24b10f9d4aa 334 SMART SM00729 96 304 2.7E-14 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 ALFP_0257 f41a2d129dabd1fb6deba24b10f9d4aa 334 Pfam PF04055 Radical SAM superfamily 103 263 5.8E-13 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 ALFP_0257 f41a2d129dabd1fb6deba24b10f9d4aa 334 TIGRFAM TIGR00510 lipA: lipoyl synthase 44 326 3.1E-129 T 12-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 ALFP_0257 f41a2d129dabd1fb6deba24b10f9d4aa 334 Gene3D G3DSA:3.20.20.70 64 320 1.0E-21 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 SUPERFAMILY SSF141259 485 562 4.84E-22 T 12-10-2018 IPR036101 CarD-like/TRCF domain superfamily ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 Pfam PF03461 TRCF domain 1023 1114 1.9E-24 T 12-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 Gene3D G3DSA:3.40.50.300 492 1004 5.0E-230 T 12-10-2018 ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 SUPERFAMILY SSF52540 797 1004 1.19E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 SUPERFAMILY SSF52540 364 477 2.04E-20 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 Pfam PF00270 DEAD/DEAH box helicase 619 776 5.6E-18 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 SUPERFAMILY SSF52540 37 355 4.78E-93 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 SUPERFAMILY SSF143517 1008 1160 8.89E-37 T 12-10-2018 IPR037235 TRCF-like, C-terminal domain ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 SUPERFAMILY SSF52540 537 797 4.09E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 Gene3D G3DSA:3.40.50.300 556 795 5.0E-230 T 12-10-2018 ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 SMART SM00487 614 804 1.2E-33 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 SMART SM00982 1022 1122 4.5E-41 T 12-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 Pfam PF00271 Helicase conserved C-terminal domain 819 923 7.3E-17 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 Gene3D G3DSA:3.90.1150.50 1018 1163 1.6E-37 T 12-10-2018 IPR037235 TRCF-like, C-terminal domain ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 SMART SM01058 493 590 4.9E-43 T 12-10-2018 IPR003711 CarD-like/TRCF domain ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 Pfam PF02559 CarD-like/TRCF domain 494 589 1.0E-23 T 12-10-2018 IPR003711 CarD-like/TRCF domain ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 Gene3D G3DSA:2.30.30.840 497 555 5.0E-230 T 12-10-2018 ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 161 1095 0.0 T 12-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 50 1126 26.998 T 12-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 Gene3D G3DSA:3.40.50.11180 38 347 2.6E-110 T 12-10-2018 ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 Gene3D G3DSA:3.30.2060.10 143 228 2.6E-110 T 12-10-2018 ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 SMART SM00490 840 924 1.8E-17 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_2573 fa79e7e9e95cca583a6f45a477c78ae3 1163 Gene3D G3DSA:3.40.50.11140 366 465 1.8E-13 T 12-10-2018 ALFP_0540 254559e1f3e33d3a4672e5d5c2244a3a 211 SUPERFAMILY SSF55846 21 187 1.13E-58 T 12-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 ALFP_0540 254559e1f3e33d3a4672e5d5c2244a3a 211 SMART SM00644 27 175 1.1E-43 T 12-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 ALFP_0540 254559e1f3e33d3a4672e5d5c2244a3a 211 Gene3D G3DSA:3.40.80.10 12 188 2.6E-55 T 12-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 ALFP_0540 254559e1f3e33d3a4672e5d5c2244a3a 211 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 63 176 4.9E-26 T 12-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 Gene3D G3DSA:3.30.190.20 1137 1256 7.6E-28 T 12-10-2018 ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 Pfam PF00005 ABC transporter 656 884 3.5E-6 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 SMART SM00382 665 952 0.083 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 SMART SM00382 1566 1853 1.1 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 SMART SM00382 1035 1498 7.0 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 Gene3D G3DSA:3.40.50.300 1550 1883 3.6E-128 T 12-10-2018 ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 Gene3D G3DSA:3.40.50.300 1006 1124 3.3E-24 T 12-10-2018 ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 ProSitePatterns PS00211 ABC transporters family signature. 1764 1778 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 ProSitePatterns PS00211 ABC transporters family signature. 1421 1435 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 5 970 6.7E-284 T 12-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 Gene3D G3DSA:1.10.8.280 300 408 4.7E-216 T 12-10-2018 ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 Gene3D G3DSA:3.30.190.20 131 250 4.7E-216 T 12-10-2018 ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 Gene3D G3DSA:1.20.1580.10 91 526 4.7E-216 T 12-10-2018 ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 Gene3D G3DSA:3.40.50.300 1293 1531 2.6E-59 T 12-10-2018 ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 ProSitePatterns PS00211 ABC transporters family signature. 866 880 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 SUPERFAMILY SSF52540 654 959 4.9E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 SUPERFAMILY SSF52540 1552 1857 5.07E-35 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 SUPERFAMILY SSF52540 1023 1503 1.15E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 SUPERFAMILY SSF52540 8 603 6.11E-37 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 Gene3D G3DSA:1.20.1580.10 1626 1764 3.6E-128 T 12-10-2018 ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 Gene3D G3DSA:1.20.1580.10 724 866 2.6E-127 T 12-10-2018 ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 Gene3D G3DSA:3.40.50.300 7 627 4.7E-216 T 12-10-2018 ALFP_0764 006bb584696d9ea025d5cc4e172c87e1 1900 Gene3D G3DSA:3.40.50.300 649 982 2.6E-127 T 12-10-2018 ALFP_0932 96efeee7c1d77f5b5b977057e09cd8e6 377 Gene3D G3DSA:3.30.310.170 252 375 1.2E-12 T 12-10-2018 ALFP_0932 96efeee7c1d77f5b5b977057e09cd8e6 377 Pfam PF06804 NlpB/DapX lipoprotein 38 370 4.4E-44 T 12-10-2018 IPR010653 NlpB/DapX lipoprotein ALFP_0051 52dbe782200ab5225eb204eaf367cd92 293 Gene3D G3DSA:3.40.190.10 161 256 1.5E-23 T 12-10-2018 ALFP_0051 52dbe782200ab5225eb204eaf367cd92 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 65 1.1E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0051 52dbe782200ab5225eb204eaf367cd92 293 Gene3D G3DSA:3.40.190.10 104 283 1.5E-23 T 12-10-2018 ALFP_0051 52dbe782200ab5225eb204eaf367cd92 293 Pfam PF03466 LysR substrate binding domain 90 287 1.5E-15 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0051 52dbe782200ab5225eb204eaf367cd92 293 SUPERFAMILY SSF53850 95 290 8.69E-19 T 12-10-2018 ALFP_0051 52dbe782200ab5225eb204eaf367cd92 293 SUPERFAMILY SSF46785 5 86 3.18E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0051 52dbe782200ab5225eb204eaf367cd92 293 Gene3D G3DSA:1.10.10.10 5 97 1.7E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0051 52dbe782200ab5225eb204eaf367cd92 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 8.9E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0051 52dbe782200ab5225eb204eaf367cd92 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 8.9E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0051 52dbe782200ab5225eb204eaf367cd92 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 8.9E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1920 a5e2a2f1407a4cffdeb5921b02c3a233 310 Pfam PF03466 LysR substrate binding domain 88 302 4.3E-44 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1920 a5e2a2f1407a4cffdeb5921b02c3a233 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 7.1E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1920 a5e2a2f1407a4cffdeb5921b02c3a233 310 SUPERFAMILY SSF53850 90 305 5.27E-47 T 12-10-2018 ALFP_1920 a5e2a2f1407a4cffdeb5921b02c3a233 310 SUPERFAMILY SSF46785 3 111 5.44E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1920 a5e2a2f1407a4cffdeb5921b02c3a233 310 Gene3D G3DSA:1.10.10.10 3 90 2.3E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1920 a5e2a2f1407a4cffdeb5921b02c3a233 310 Gene3D G3DSA:3.40.190.290 91 301 2.9E-61 T 12-10-2018 ALFP_3410 16d7bfd539945979b5c23c8c1999c363 269 Pfam PF13665 Domain of unknown function (DUF4150) 9 114 1.5E-33 T 12-10-2018 IPR025425 Domain of unknown function DUF4150 ALFP_2631 50221b2e61d8493d7811b65559be7141 467 SMART SM00382 159 306 1.4E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2631 50221b2e61d8493d7811b65559be7141 467 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 163 176 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 ALFP_2631 50221b2e61d8493d7811b65559be7141 467 SUPERFAMILY SSF46689 406 458 7.62E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2631 50221b2e61d8493d7811b65559be7141 467 Pfam PF02954 Bacterial regulatory protein, Fis family 417 456 4.3E-10 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_2631 50221b2e61d8493d7811b65559be7141 467 Pfam PF00158 Sigma-54 interaction domain 140 305 2.1E-65 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 ALFP_2631 50221b2e61d8493d7811b65559be7141 467 Gene3D G3DSA:1.10.10.60 413 462 1.0E-10 T 12-10-2018 ALFP_2631 50221b2e61d8493d7811b65559be7141 467 Gene3D G3DSA:3.40.50.300 130 310 4.3E-61 T 12-10-2018 ALFP_2631 50221b2e61d8493d7811b65559be7141 467 Gene3D G3DSA:1.10.8.60 319 385 1.1E-5 T 12-10-2018 ALFP_2631 50221b2e61d8493d7811b65559be7141 467 SUPERFAMILY SSF52540 139 368 8.71E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3134 d6361b5f0c5068f0dd962d23e5721da4 362 Pfam PF01926 50S ribosome-binding GTPase 161 289 3.7E-23 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_3134 d6361b5f0c5068f0dd962d23e5721da4 362 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 12-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 ALFP_3134 d6361b5f0c5068f0dd962d23e5721da4 362 Pfam PF01018 GTP1/OBG 4 158 9.1E-57 T 12-10-2018 IPR006169 GTP1/OBG domain ALFP_3134 d6361b5f0c5068f0dd962d23e5721da4 362 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 334 1.7E-137 T 12-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 ALFP_3134 d6361b5f0c5068f0dd962d23e5721da4 362 PIRSF PIRSF002401 1 358 2.6E-132 T 12-10-2018 IPR035101 GTP-binding protein, Obg-type ALFP_3134 d6361b5f0c5068f0dd962d23e5721da4 362 Hamap MF_01454 GTPase Obg [obg]. 2 336 46.994 T 12-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 ALFP_3134 d6361b5f0c5068f0dd962d23e5721da4 362 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 1.9E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_3134 d6361b5f0c5068f0dd962d23e5721da4 362 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 1.9E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_3134 d6361b5f0c5068f0dd962d23e5721da4 362 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 1.9E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_3134 d6361b5f0c5068f0dd962d23e5721da4 362 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 1.9E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_3134 d6361b5f0c5068f0dd962d23e5721da4 362 SUPERFAMILY SSF52540 151 338 8.18E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3134 d6361b5f0c5068f0dd962d23e5721da4 362 SUPERFAMILY SSF82051 2 158 4.84E-55 T 12-10-2018 IPR036726 GTP1/OBG domain superfamily ALFP_3134 d6361b5f0c5068f0dd962d23e5721da4 362 Gene3D G3DSA:3.40.50.300 160 357 4.9E-50 T 12-10-2018 ALFP_3134 d6361b5f0c5068f0dd962d23e5721da4 362 Gene3D G3DSA:2.70.210.12 1 158 1.2E-56 T 12-10-2018 IPR036726 GTP1/OBG domain superfamily ALFP_1624 ae15faddb7905a283ef94ba52bf41852 401 SUPERFAMILY SSF103473 2 396 1.57E-75 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_1624 ae15faddb7905a283ef94ba52bf41852 401 Pfam PF07690 Major Facilitator Superfamily 3 344 3.5E-38 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_1624 ae15faddb7905a283ef94ba52bf41852 401 Gene3D G3DSA:1.20.1250.20 1 399 1.2E-66 T 12-10-2018 ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 Pfam PF00672 HAMP domain 328 376 5.6E-11 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 PIRSF PIRSF037532 1 766 1.2E-221 T 12-10-2018 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 SUPERFAMILY SSF158472 328 377 1.83E-7 T 12-10-2018 ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 645 757 2.1E-20 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 Gene3D G3DSA:3.30.450.20 385 514 1.7E-14 T 12-10-2018 ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 SUPERFAMILY SSF55785 386 514 8.38E-10 T 12-10-2018 IPR035965 PAS domain superfamily ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 Gene3D G3DSA:1.20.1480.50 295 384 1.4E-11 T 12-10-2018 ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 Gene3D G3DSA:3.30.565.10 595 766 3.6E-38 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 SMART SM00304 328 380 4.1E-12 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 Gene3D G3DSA:1.10.287.130 515 594 1.7E-11 T 12-10-2018 ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 PRINTS PR00344 Bacterial sensor protein C-terminal signature 712 722 4.8E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 PRINTS PR00344 Bacterial sensor protein C-terminal signature 694 708 4.8E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 PRINTS PR00344 Bacterial sensor protein C-terminal signature 723 741 4.8E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 Pfam PF00512 His Kinase A (phospho-acceptor) domain 526 593 1.3E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 SMART SM00388 524 596 2.0E-12 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 SUPERFAMILY SSF47384 522 595 1.37E-10 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 SMART SM00387 645 763 2.5E-30 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_3267 eac1fc847271b634fe876c5d279d56bd 779 SUPERFAMILY SSF55874 587 759 8.51E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_1857 79a7da9d524c0b692325688adaab8cb2 423 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 29 405 2.0E-100 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 ALFP_1857 79a7da9d524c0b692325688adaab8cb2 423 Pfam PF07687 Peptidase dimerisation domain 216 313 2.2E-10 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain ALFP_1857 79a7da9d524c0b692325688adaab8cb2 423 SUPERFAMILY SSF53187 15 419 1.09E-76 T 12-10-2018 ALFP_1857 79a7da9d524c0b692325688adaab8cb2 423 Pfam PF01546 Peptidase family M20/M25/M40 87 410 2.2E-28 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 ALFP_1857 79a7da9d524c0b692325688adaab8cb2 423 Gene3D G3DSA:3.40.630.10 28 402 2.2E-127 T 12-10-2018 ALFP_1857 79a7da9d524c0b692325688adaab8cb2 423 PIRSF PIRSF005962 13 421 1.0E-111 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 ALFP_1857 79a7da9d524c0b692325688adaab8cb2 423 Gene3D G3DSA:3.30.70.360 210 325 2.2E-127 T 12-10-2018 ALFP_1857 79a7da9d524c0b692325688adaab8cb2 423 SUPERFAMILY SSF55031 214 319 8.22E-23 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain ALFP_1504 a13ac2648071a6f090bd27c8a8bce037 282 Pfam PF02811 PHP domain 10 163 1.6E-7 T 12-10-2018 IPR004013 PHP domain GO:0003824 ALFP_1504 a13ac2648071a6f090bd27c8a8bce037 282 Gene3D G3DSA:1.10.150.650 102 174 3.7E-87 T 12-10-2018 ALFP_1504 a13ac2648071a6f090bd27c8a8bce037 282 Gene3D G3DSA:3.20.20.140 9 255 3.7E-87 T 12-10-2018 ALFP_1504 a13ac2648071a6f090bd27c8a8bce037 282 SMART SM00481 9 74 4.8E-15 T 12-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal ALFP_1504 a13ac2648071a6f090bd27c8a8bce037 282 SUPERFAMILY SSF89550 8 281 1.35E-47 T 12-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 SUPERFAMILY SSF51735 1548 1727 1.26E-16 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 525 826 1.3E-92 T 12-10-2018 IPR020801 Polyketide synthase, acyl transferase domain ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 156 172 - T 12-10-2018 IPR018201 Beta-ketoacyl synthase, active site ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 SMART SM00829 1749 2064 1.7E-175 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Gene3D G3DSA:3.30.70.3290 437 871 8.5E-125 T 12-10-2018 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 SMART SM01294 2369 2435 6.2E-4 T 12-10-2018 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Pfam PF00550 Phosphopantetheine attachment site 2369 2435 6.8E-14 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Pfam PF00107 Zinc-binding dehydrogenase 1893 1990 1.4E-23 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 SMART SM00823 Phosphopantetheine attachment site 2368 2439 1.5E-14 T 12-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 367 7.3E-39 T 12-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 SUPERFAMILY SSF51735 1853 2008 5.06E-46 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Gene3D G3DSA:3.40.50.720 1870 2012 4.7E-121 T 12-10-2018 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 SUPERFAMILY SSF53901 1 417 2.07E-94 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 SUPERFAMILY SSF52151 522 815 1.39E-63 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 SUPERFAMILY SSF51735 2086 2276 1.63E-45 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Gene3D G3DSA:3.40.366.10 523 829 8.5E-125 T 12-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Pfam PF14765 Polyketide synthase dehydratase 888 1155 3.9E-57 T 12-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 SMART SM00825 Beta-ketoacyl synthase 1 421 3.8E-186 T 12-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Gene3D G3DSA:3.40.50.720 1537 1744 6.8E-19 T 12-10-2018 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 SUPERFAMILY SSF53335 1335 1519 9.0E-18 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 1767 1835 9.0E-5 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 370 472 3.0E-12 T 12-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Gene3D G3DSA:3.10.129.110 881 1158 1.6E-60 T 12-10-2018 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Gene3D G3DSA:3.90.180.10 1752 2064 4.7E-121 T 12-10-2018 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Pfam PF13489 Methyltransferase domain 1349 1518 2.8E-9 T 12-10-2018 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Gene3D G3DSA:3.40.50.720 2082 2341 2.0E-66 T 12-10-2018 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 SUPERFAMILY SSF55048 648 714 1.83E-9 T 12-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 1882 1903 - T 12-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 SMART SM00826 888 1045 2.9E-44 T 12-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Pfam PF08659 KR domain 2088 2266 5.9E-57 T 12-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Pfam PF00698 Acyl transferase domain 524 816 7.0E-62 T 12-10-2018 IPR014043 Acyl transferase ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Gene3D G3DSA:3.40.50.150 1263 1529 1.6E-19 T 12-10-2018 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Gene3D G3DSA:1.10.1200.10 2358 2451 1.7E-16 T 12-10-2018 IPR036736 ACP-like superfamily ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 243 4.6E-78 T 12-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 Gene3D G3DSA:3.40.47.10 1 436 9.5E-173 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 SUPERFAMILY SSF50129 1746 1887 1.45E-29 T 12-10-2018 IPR011032 GroES-like superfamily ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2088 2268 6.1E-51 T 12-10-2018 ALFP_3388 8b1ed09fa0ec5f988a11e335eded5620 2491 SUPERFAMILY SSF47336 2367 2447 1.44E-17 T 12-10-2018 IPR036736 ACP-like superfamily ALFP_0814 580746ffc1ba731aca143a934813f9f5 252 SUPERFAMILY SSF53850 6 249 1.36E-77 T 12-10-2018 ALFP_0814 580746ffc1ba731aca143a934813f9f5 252 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 53 66 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site ALFP_0814 580746ffc1ba731aca143a934813f9f5 252 Gene3D G3DSA:3.40.190.10 115 210 1.6E-79 T 12-10-2018 ALFP_0814 580746ffc1ba731aca143a934813f9f5 252 SMART SM00062 31 250 1.0E-69 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_0814 580746ffc1ba731aca143a934813f9f5 252 Gene3D G3DSA:3.40.190.10 34 247 1.6E-79 T 12-10-2018 ALFP_0814 580746ffc1ba731aca143a934813f9f5 252 SMART SM00079 31 249 2.7E-8 T 12-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 ALFP_0814 580746ffc1ba731aca143a934813f9f5 252 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 32 249 9.3E-72 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_1599 033a88c3f8d127739c1616fa5fa9a843 556 Pfam PF00682 HMGL-like 32 309 2.7E-70 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 ALFP_1599 033a88c3f8d127739c1616fa5fa9a843 556 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 6 553 49.767 T 12-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 ALFP_1599 033a88c3f8d127739c1616fa5fa9a843 556 SUPERFAMILY SSF89000 386 436 1.77E-15 T 12-10-2018 ALFP_1599 033a88c3f8d127739c1616fa5fa9a843 556 Gene3D G3DSA:3.20.20.70 10 374 4.3E-142 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_1599 033a88c3f8d127739c1616fa5fa9a843 556 SMART SM00917 420 552 1.4E-14 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 ALFP_1599 033a88c3f8d127739c1616fa5fa9a843 556 Gene3D G3DSA:3.30.160.270 375 550 1.2E-45 T 12-10-2018 ALFP_1599 033a88c3f8d127739c1616fa5fa9a843 556 SUPERFAMILY SSF110921 468 549 1.14E-20 T 12-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 ALFP_1599 033a88c3f8d127739c1616fa5fa9a843 556 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 241 254 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 ALFP_1599 033a88c3f8d127739c1616fa5fa9a843 556 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 38 54 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 ALFP_1599 033a88c3f8d127739c1616fa5fa9a843 556 SUPERFAMILY SSF51569 20 328 1.37E-91 T 12-10-2018 ALFP_1599 033a88c3f8d127739c1616fa5fa9a843 556 Pfam PF08502 LeuA allosteric (dimerisation) domain 420 551 1.7E-16 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 ALFP_2338 9af9763971a1731e84f5661c569a91c0 162 SUPERFAMILY SSF46785 23 156 5.71E-31 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2338 9af9763971a1731e84f5661c569a91c0 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 86 101 4.6E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2338 9af9763971a1731e84f5661c569a91c0 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 135 155 4.6E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2338 9af9763971a1731e84f5661c569a91c0 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 105 121 4.6E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2338 9af9763971a1731e84f5661c569a91c0 162 Gene3D G3DSA:1.10.10.10 5 159 1.1E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2338 9af9763971a1731e84f5661c569a91c0 162 Pfam PF01047 MarR family 51 110 7.9E-13 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2338 9af9763971a1731e84f5661c569a91c0 162 SMART SM00347 44 145 1.7E-22 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0646 b5165fac5922049bd5af04f6db4c709e 245 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 16 223 8.6E-54 T 12-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 ALFP_0646 b5165fac5922049bd5af04f6db4c709e 245 Gene3D G3DSA:1.20.140.150 35 170 9.4E-6 T 12-10-2018 ALFP_2544 8960b1286396a24246693a0ec9304204 399 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 85 99 - T 12-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 ALFP_2544 8960b1286396a24246693a0ec9304204 399 PIRSF PIRSF001413 2 398 1.7E-159 T 12-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 ALFP_2544 8960b1286396a24246693a0ec9304204 399 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 58 382 9.0E-48 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme ALFP_2544 8960b1286396a24246693a0ec9304204 399 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 11 394 3.5E-188 T 12-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 ALFP_2544 8960b1286396a24246693a0ec9304204 399 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 6 395 51.007 T 12-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 ALFP_2544 8960b1286396a24246693a0ec9304204 399 SUPERFAMILY SSF53686 7 393 1.31E-145 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme ALFP_2544 8960b1286396a24246693a0ec9304204 399 Gene3D G3DSA:3.40.50.1100 14 210 5.6E-182 T 12-10-2018 ALFP_2544 8960b1286396a24246693a0ec9304204 399 Gene3D G3DSA:3.40.50.1100 58 388 5.6E-182 T 12-10-2018 ALFP_0474 2a4a90b8bdef8d7b2323de1b561d3e4b 301 SUPERFAMILY SSF46785 4 112 2.28E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0474 2a4a90b8bdef8d7b2323de1b561d3e4b 301 Gene3D G3DSA:1.10.10.10 1 87 6.1E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0474 2a4a90b8bdef8d7b2323de1b561d3e4b 301 Pfam PF03466 LysR substrate binding domain 89 291 2.2E-37 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0474 2a4a90b8bdef8d7b2323de1b561d3e4b 301 Gene3D G3DSA:3.40.190.10 164 264 5.0E-62 T 12-10-2018 ALFP_0474 2a4a90b8bdef8d7b2323de1b561d3e4b 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 5.3E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0474 2a4a90b8bdef8d7b2323de1b561d3e4b 301 Gene3D G3DSA:3.40.190.10 93 290 5.0E-62 T 12-10-2018 ALFP_0474 2a4a90b8bdef8d7b2323de1b561d3e4b 301 SUPERFAMILY SSF53850 89 294 8.51E-38 T 12-10-2018 ALFP_3674 7dfcbbe175ba2d23ac5dc512ecd0ce9c 234 SUPERFAMILY SSF52172 7 186 2.42E-32 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_3674 7dfcbbe175ba2d23ac5dc512ecd0ce9c 234 Pfam PF00072 Response regulator receiver domain 6 115 6.2E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_3674 7dfcbbe175ba2d23ac5dc512ecd0ce9c 234 SMART SM00448 1 114 5.1E-35 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_3674 7dfcbbe175ba2d23ac5dc512ecd0ce9c 234 Gene3D G3DSA:1.10.10.10 124 229 9.4E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3674 7dfcbbe175ba2d23ac5dc512ecd0ce9c 234 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 227 7.1E-18 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_3674 7dfcbbe175ba2d23ac5dc512ecd0ce9c 234 SMART SM00862 151 227 6.9E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_3674 7dfcbbe175ba2d23ac5dc512ecd0ce9c 234 Gene3D G3DSA:3.40.50.2300 2 123 6.5E-29 T 12-10-2018 ALFP_0463 25cde069b038c5fe3b7471ce7bb94d6f 284 Pfam PF14525 AraC-binding-like domain 2 153 5.9E-20 T 12-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like ALFP_0463 25cde069b038c5fe3b7471ce7bb94d6f 284 SUPERFAMILY SSF46689 226 279 8.96E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0463 25cde069b038c5fe3b7471ce7bb94d6f 284 SMART SM00342 190 276 8.4E-25 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0463 25cde069b038c5fe3b7471ce7bb94d6f 284 Gene3D G3DSA:1.10.10.60 174 280 3.5E-30 T 12-10-2018 ALFP_0463 25cde069b038c5fe3b7471ce7bb94d6f 284 SUPERFAMILY SSF46689 174 224 3.94E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0463 25cde069b038c5fe3b7471ce7bb94d6f 284 Pfam PF12833 Helix-turn-helix domain 196 278 1.6E-23 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0463 25cde069b038c5fe3b7471ce7bb94d6f 284 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 227 272 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ALFP_2323 48175d16312bf0491ebfb90f5298a0d4 369 SUPERFAMILY SSF53383 2 368 1.18E-104 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2323 48175d16312bf0491ebfb90f5298a0d4 369 Gene3D G3DSA:3.90.1150.10 266 369 1.0E-40 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_2323 48175d16312bf0491ebfb90f5298a0d4 369 Gene3D G3DSA:3.40.640.10 15 265 5.4E-80 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2323 48175d16312bf0491ebfb90f5298a0d4 369 Pfam PF00266 Aminotransferase class-V 3 357 1.4E-44 T 12-10-2018 IPR000192 Aminotransferase class V domain ALFP_2323 48175d16312bf0491ebfb90f5298a0d4 369 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 367 3.6E-141 T 12-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 ALFP_2323 48175d16312bf0491ebfb90f5298a0d4 369 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 1 368 47.592 T 12-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 ALFP_2323 48175d16312bf0491ebfb90f5298a0d4 369 PIRSF PIRSF000525 1 369 2.1E-137 T 12-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 ALFP_0210 ea7de488163c7712b7d04af237fa7a83 298 Gene3D G3DSA:1.10.10.10 2 76 1.4E-9 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0210 ea7de488163c7712b7d04af237fa7a83 298 Gene3D G3DSA:3.40.50.10490 96 284 5.5E-23 T 12-10-2018 ALFP_0210 ea7de488163c7712b7d04af237fa7a83 298 SUPERFAMILY SSF53697 108 281 2.83E-19 T 12-10-2018 ALFP_0210 ea7de488163c7712b7d04af237fa7a83 298 Pfam PF01380 SIS domain 131 255 1.5E-14 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 ALFP_0210 ea7de488163c7712b7d04af237fa7a83 298 SUPERFAMILY SSF46689 2 76 6.27E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2460 16cc18cdaab0c1e7f8d6832e88ba3184 223 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 172 177 - T 12-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site ALFP_2460 16cc18cdaab0c1e7f8d6832e88ba3184 223 Gene3D G3DSA:3.40.140.10 101 223 8.4E-42 T 12-10-2018 ALFP_2460 16cc18cdaab0c1e7f8d6832e88ba3184 223 SUPERFAMILY SSF47781 16 82 6.67E-7 T 12-10-2018 IPR010994 RuvA domain 2-like ALFP_2460 16cc18cdaab0c1e7f8d6832e88ba3184 223 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 223 4.1E-61 T 12-10-2018 IPR001405 Uncharacterised protein family UPF0758 ALFP_2460 16cc18cdaab0c1e7f8d6832e88ba3184 223 Pfam PF04002 RadC-like JAB domain 103 221 4.9E-43 T 12-10-2018 IPR025657 RadC-like JAB domain ALFP_2460 16cc18cdaab0c1e7f8d6832e88ba3184 223 SUPERFAMILY SSF102712 119 197 4.97E-6 T 12-10-2018 ALFP_0708 d04c7a963ef432eafedcf1ed08f90500 623 Gene3D G3DSA:3.30.1360.200 293 426 1.2E-32 T 12-10-2018 ALFP_0708 d04c7a963ef432eafedcf1ed08f90500 623 Gene3D G3DSA:3.30.70.3400 217 292 2.2E-20 T 12-10-2018 ALFP_0708 d04c7a963ef432eafedcf1ed08f90500 623 Pfam PF13721 SecD export protein N-terminal TM region 1 114 1.1E-33 T 12-10-2018 IPR027398 SecD export protein N-terminal TM domain ALFP_0708 d04c7a963ef432eafedcf1ed08f90500 623 Pfam PF07549 SecD/SecF GG Motif 126 151 8.4E-7 T 12-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site ALFP_0708 d04c7a963ef432eafedcf1ed08f90500 623 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 134 598 3.7E-145 T 12-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 ALFP_0708 d04c7a963ef432eafedcf1ed08f90500 623 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 613 47.559 T 12-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 ALFP_0708 d04c7a963ef432eafedcf1ed08f90500 623 Pfam PF02355 Protein export membrane protein 431 598 1.2E-19 T 12-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial ALFP_0708 d04c7a963ef432eafedcf1ed08f90500 623 Gene3D G3DSA:1.20.1640.10 427 609 2.3E-10 T 12-10-2018 ALFP_0708 d04c7a963ef432eafedcf1ed08f90500 623 SUPERFAMILY SSF82866 408 605 3.01E-40 T 12-10-2018 ALFP_0708 d04c7a963ef432eafedcf1ed08f90500 623 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 357 591 1.9E-73 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 SUPERFAMILY SSF82693 142 328 5.23E-11 T 12-10-2018 ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 SUPERFAMILY SSF82866 794 1014 4.97E-44 T 12-10-2018 ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 Gene3D G3DSA:3.30.70.1440 657 856 3.0E-228 T 12-10-2018 ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 PRINTS PR00702 Acriflavin resistance protein family signature 466 489 3.9E-19 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 PRINTS PR00702 Acriflavin resistance protein family signature 441 464 3.9E-19 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 PRINTS PR00702 Acriflavin resistance protein family signature 388 412 3.9E-19 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 PRINTS PR00702 Acriflavin resistance protein family signature 42 60 3.9E-19 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 PRINTS PR00702 Acriflavin resistance protein family signature 360 381 3.9E-19 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 SUPERFAMILY SSF82714 709 793 1.96E-11 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 SUPERFAMILY SSF82866 303 492 9.02E-33 T 12-10-2018 ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 Pfam PF00873 AcrB/AcrD/AcrF family 8 1010 3.3E-150 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 SUPERFAMILY SSF82714 189 270 4.19E-10 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 Gene3D G3DSA:1.20.1640.10 509 1008 3.0E-228 T 12-10-2018 ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 Gene3D G3DSA:3.30.70.1430 44 804 3.0E-228 T 12-10-2018 ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 Gene3D G3DSA:3.30.2090.10 183 272 3.0E-228 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 Gene3D G3DSA:3.30.70.1430 557 656 3.0E-228 T 12-10-2018 ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 Gene3D G3DSA:3.30.70.1320 141 330 3.0E-228 T 12-10-2018 ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 SUPERFAMILY SSF82693 44 138 2.27E-17 T 12-10-2018 ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 Gene3D G3DSA:1.20.1640.10 16 508 3.0E-228 T 12-10-2018 ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 SUPERFAMILY SSF82693 556 652 4.19E-8 T 12-10-2018 ALFP_0692 529cc7f661299937dfbfe2bb8d97f407 1020 Gene3D G3DSA:3.30.2090.10 708 796 3.0E-228 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_1647 deb745cd11a430f68374f0e9798fae8d 110 SUPERFAMILY SSF54593 8 105 2.82E-5 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 TIGRFAM TIGR02082 metH: methionine synthase 25 1226 0.0 T 12-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 SUPERFAMILY SSF51717 367 635 1.7E-85 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 Pfam PF00809 Pterin binding enzyme 371 609 2.2E-56 T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 Gene3D G3DSA:3.20.20.330 14 351 2.0E-121 T 12-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 Gene3D G3DSA:1.10.1240.10 668 760 4.5E-37 T 12-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 Pfam PF02607 B12 binding domain 678 755 4.5E-24 T 12-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 SUPERFAMILY SSF52242 772 927 1.44E-41 T 12-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 Gene3D G3DSA:3.10.196.10 940 1256 6.5E-130 T 12-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 PIRSF PIRSF000381 13 1229 0.0 T 12-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 SUPERFAMILY SSF82282 19 410 7.06E-114 T 12-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 970 1241 3.1E-114 T 12-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 SUPERFAMILY SSF56507 934 1256 2.88E-118 T 12-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 Pfam PF02574 Homocysteine S-methyltransferase 28 334 6.9E-79 T 12-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 Pfam PF02310 B12 binding domain 778 872 3.0E-16 T 12-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 Gene3D G3DSA:3.40.50.280 773 928 3.1E-52 T 12-10-2018 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 SMART SM01018 676 763 4.1E-40 T 12-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 Gene3D G3DSA:3.20.20.20 352 664 5.7E-126 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 SUPERFAMILY SSF47644 671 762 1.07E-25 T 12-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_3187 3ddb85baaec50fd65502ca0e551c3227 1257 Gene3D G3DSA:1.10.288.10 969 1127 6.5E-130 T 12-10-2018 ALFP_0921 f6a31f1fa58a466c56acb24cf9107e4a 1185 SUPERFAMILY SSF52518 457 643 6.42E-16 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_0921 f6a31f1fa58a466c56acb24cf9107e4a 1185 SUPERFAMILY SSF53323 742 977 5.62E-28 T 12-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 ALFP_0921 f6a31f1fa58a466c56acb24cf9107e4a 1185 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 477 562 7.3E-7 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 ALFP_0921 f6a31f1fa58a466c56acb24cf9107e4a 1185 Gene3D G3DSA:3.40.920.10 739 947 1.7E-16 T 12-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 ALFP_0921 f6a31f1fa58a466c56acb24cf9107e4a 1185 Gene3D G3DSA:3.40.50.970 17 232 1.0E-30 T 12-10-2018 ALFP_0921 f6a31f1fa58a466c56acb24cf9107e4a 1185 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 751 937 6.4E-20 T 12-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 ALFP_0921 f6a31f1fa58a466c56acb24cf9107e4a 1185 SUPERFAMILY SSF52518 28 241 1.94E-19 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_0895 9a717eec573f5c76d11a298ee93806d3 198 Gene3D G3DSA:3.30.110.60 4 103 1.2E-27 T 12-10-2018 IPR035920 YhbY-like superfamily ALFP_0895 9a717eec573f5c76d11a298ee93806d3 198 SUPERFAMILY SSF75471 5 95 1.14E-24 T 12-10-2018 IPR035920 YhbY-like superfamily ALFP_0895 9a717eec573f5c76d11a298ee93806d3 198 SMART SM01103 6 89 2.1E-33 T 12-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 ALFP_0895 9a717eec573f5c76d11a298ee93806d3 198 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 14 90 1.0E-24 T 12-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 ALFP_0895 9a717eec573f5c76d11a298ee93806d3 198 Pfam PF01985 CRS1 / YhbY (CRM) domain 6 89 3.7E-17 T 12-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 ALFP_1134 1b54e20e300c25d5ad5414026589183e 1263 SMART SM00847 426 516 9.3E-34 T 12-10-2018 IPR007502 Helicase-associated domain GO:0004386 ALFP_1134 1b54e20e300c25d5ad5414026589183e 1263 Gene3D G3DSA:3.40.50.300 2 203 1.3E-76 T 12-10-2018 ALFP_1134 1b54e20e300c25d5ad5414026589183e 1263 SMART SM00382 38 332 5.7E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1134 1b54e20e300c25d5ad5414026589183e 1263 SMART SM00490 265 366 9.3E-15 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_1134 1b54e20e300c25d5ad5414026589183e 1263 Pfam PF00271 Helicase conserved C-terminal domain 247 366 6.2E-12 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_1134 1b54e20e300c25d5ad5414026589183e 1263 Pfam PF11898 Domain of unknown function (DUF3418) 670 1259 1.3E-209 T 12-10-2018 IPR024590 RNA helicase HrpA, C-terminal ALFP_1134 1b54e20e300c25d5ad5414026589183e 1263 Gene3D G3DSA:1.20.120.1080 409 514 1.6E-20 T 12-10-2018 ALFP_1134 1b54e20e300c25d5ad5414026589183e 1263 Gene3D G3DSA:3.40.50.300 204 383 9.0E-55 T 12-10-2018 ALFP_1134 1b54e20e300c25d5ad5414026589183e 1263 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 6 1258 0.0 T 12-10-2018 IPR010222 RNA helicase HrpA GO:0004004 ALFP_1134 1b54e20e300c25d5ad5414026589183e 1263 SUPERFAMILY SSF52540 20 641 3.17E-103 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1134 1b54e20e300c25d5ad5414026589183e 1263 Pfam PF04408 Helicase associated domain (HA2) 429 510 7.5E-20 T 12-10-2018 IPR007502 Helicase-associated domain GO:0004386 ALFP_1134 1b54e20e300c25d5ad5414026589183e 1263 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 580 656 5.4E-15 T 12-10-2018 IPR011709 Domain of unknown function DUF1605 ALFP_1134 1b54e20e300c25d5ad5414026589183e 1263 SMART SM00487 21 210 1.2E-27 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain ALFP_1134 1b54e20e300c25d5ad5414026589183e 1263 Pfam PF00270 DEAD/DEAH box helicase 30 180 9.0E-6 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ALFP_2346 d50d2c8b27a3c55e95f464a04b0bb594 163 Pfam PF01042 Endoribonuclease L-PSP 48 161 1.2E-15 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 ALFP_2346 d50d2c8b27a3c55e95f464a04b0bb594 163 Gene3D G3DSA:3.30.1330.40 23 163 1.4E-26 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_2346 d50d2c8b27a3c55e95f464a04b0bb594 163 SUPERFAMILY SSF55298 28 163 2.36E-24 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_0002 0ccd1008b897a47c1b41360b158c18b7 371 Gene3D G3DSA:3.10.150.10 2 125 4.8E-34 T 12-10-2018 ALFP_0002 0ccd1008b897a47c1b41360b158c18b7 371 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 9 122 9.9E-28 T 12-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 ALFP_0002 0ccd1008b897a47c1b41360b158c18b7 371 Pfam PF02767 DNA polymerase III beta subunit, central domain 134 247 7.1E-31 T 12-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 ALFP_0002 0ccd1008b897a47c1b41360b158c18b7 371 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 250 370 7.1E-31 T 12-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 ALFP_0002 0ccd1008b897a47c1b41360b158c18b7 371 Gene3D G3DSA:3.10.150.10 252 371 5.6E-36 T 12-10-2018 ALFP_0002 0ccd1008b897a47c1b41360b158c18b7 371 SMART SM00480 20 367 3.7E-105 T 12-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 ALFP_0002 0ccd1008b897a47c1b41360b158c18b7 371 PIRSF PIRSF000804 3 371 1.3E-106 T 12-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 ALFP_0002 0ccd1008b897a47c1b41360b158c18b7 371 Gene3D G3DSA:3.10.150.10 129 251 1.6E-33 T 12-10-2018 ALFP_0002 0ccd1008b897a47c1b41360b158c18b7 371 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 9 370 2.9E-89 T 12-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 ALFP_0002 0ccd1008b897a47c1b41360b158c18b7 371 SUPERFAMILY SSF55979 130 248 7.54E-27 T 12-10-2018 ALFP_0002 0ccd1008b897a47c1b41360b158c18b7 371 SUPERFAMILY SSF55979 250 371 2.62E-33 T 12-10-2018 ALFP_0002 0ccd1008b897a47c1b41360b158c18b7 371 SUPERFAMILY SSF55979 8 120 2.39E-20 T 12-10-2018 ALFP_1969 bfdfce93fdd4f683d64076eaede247a4 232 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 166 183 - T 12-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 ALFP_1969 bfdfce93fdd4f683d64076eaede247a4 232 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 1 220 2.2E-81 T 12-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 ALFP_1969 bfdfce93fdd4f683d64076eaede247a4 232 SUPERFAMILY SSF64005 1 216 8.5E-78 T 12-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 ALFP_1969 bfdfce93fdd4f683d64076eaede247a4 232 Gene3D G3DSA:3.40.1180.10 1 221 3.0E-82 T 12-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 ALFP_1969 bfdfce93fdd4f683d64076eaede247a4 232 Pfam PF01255 Putative undecaprenyl diphosphate synthase 1 220 1.8E-77 T 12-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 ALFP_1969 bfdfce93fdd4f683d64076eaede247a4 232 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 1 221 35.256 T 12-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 ALFP_2085 b1ee0f9bce35737ea8059124dcf7154f 550 Pfam PF00498 FHA domain 24 86 1.3E-12 T 12-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 ALFP_2085 b1ee0f9bce35737ea8059124dcf7154f 550 SMART SM00240 21 71 8.1E-12 T 12-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 ALFP_2085 b1ee0f9bce35737ea8059124dcf7154f 550 SUPERFAMILY SSF52540 205 530 6.1E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2085 b1ee0f9bce35737ea8059124dcf7154f 550 SUPERFAMILY SSF49879 21 93 3.16E-18 T 12-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 ALFP_2085 b1ee0f9bce35737ea8059124dcf7154f 550 Gene3D G3DSA:3.30.450.380 137 315 4.7E-33 T 12-10-2018 ALFP_2085 b1ee0f9bce35737ea8059124dcf7154f 550 Gene3D G3DSA:3.40.50.300 319 541 3.4E-72 T 12-10-2018 ALFP_2085 b1ee0f9bce35737ea8059124dcf7154f 550 Gene3D G3DSA:2.60.200.20 3 96 5.7E-17 T 12-10-2018 ALFP_2085 b1ee0f9bce35737ea8059124dcf7154f 550 Pfam PF00437 Type II/IV secretion system protein 221 497 5.3E-83 T 12-10-2018 IPR001482 Type II/IV secretion system protein ALFP_2440 7fdf61c7d66c8feb14731a70fa783f87 286 SUPERFAMILY SSF103481 43 137 4.05E-7 T 12-10-2018 ALFP_2440 7fdf61c7d66c8feb14731a70fa783f87 286 Pfam PF00892 EamA-like transporter family 9 136 4.4E-9 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_2440 7fdf61c7d66c8feb14731a70fa783f87 286 Pfam PF00892 EamA-like transporter family 148 276 1.8E-15 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_2440 7fdf61c7d66c8feb14731a70fa783f87 286 SUPERFAMILY SSF103481 185 282 1.96E-12 T 12-10-2018 ALFP_0747 3a46d416b12b856a3f762435f406c105 270 SUPERFAMILY SSF56104 1 269 1.21E-96 T 12-10-2018 ALFP_0747 3a46d416b12b856a3f762435f406c105 270 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 269 2.7E-76 T 12-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 ALFP_0747 3a46d416b12b856a3f762435f406c105 270 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 1 270 22.188 T 12-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 ALFP_0747 3a46d416b12b856a3f762435f406c105 270 Gene3D G3DSA:3.30.200.20 1 81 9.2E-26 T 12-10-2018 ALFP_0747 3a46d416b12b856a3f762435f406c105 270 Pfam PF01259 SAICAR synthetase 1 245 1.8E-98 T 12-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 ALFP_0747 3a46d416b12b856a3f762435f406c105 270 ProSitePatterns PS01058 SAICAR synthetase signature 2. 182 190 - T 12-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 ALFP_0747 3a46d416b12b856a3f762435f406c105 270 Gene3D G3DSA:3.30.470.20 83 226 1.2E-57 T 12-10-2018 ALFP_2914 880c22a47c6b2930159a6e562a6bbc28 752 Gene3D G3DSA:3.30.365.10 596 749 7.4E-36 T 12-10-2018 ALFP_2914 880c22a47c6b2930159a6e562a6bbc28 752 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 46 169 1.1E-21 T 12-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 ALFP_2914 880c22a47c6b2930159a6e562a6bbc28 752 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 330 561 2.3E-16 T 12-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 ALFP_2914 880c22a47c6b2930159a6e562a6bbc28 752 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 608 690 2.1E-11 T 12-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 ALFP_2914 880c22a47c6b2930159a6e562a6bbc28 752 Gene3D G3DSA:3.90.1170.50 190 291 1.0E-7 T 12-10-2018 ALFP_2914 880c22a47c6b2930159a6e562a6bbc28 752 Gene3D G3DSA:3.30.365.10 342 433 5.0E-33 T 12-10-2018 ALFP_2914 880c22a47c6b2930159a6e562a6bbc28 752 SUPERFAMILY SSF56003 45 232 4.32E-35 T 12-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 ALFP_2914 880c22a47c6b2930159a6e562a6bbc28 752 Gene3D G3DSA:3.30.365.10 42 177 2.9E-31 T 12-10-2018 ALFP_2914 880c22a47c6b2930159a6e562a6bbc28 752 Gene3D G3DSA:3.30.365.10 330 550 5.0E-33 T 12-10-2018 ALFP_2914 880c22a47c6b2930159a6e562a6bbc28 752 SUPERFAMILY SSF56003 324 745 4.45E-98 T 12-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 ALFP_2914 880c22a47c6b2930159a6e562a6bbc28 752 SUPERFAMILY SSF54665 207 293 9.42E-6 T 12-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily ALFP_2914 880c22a47c6b2930159a6e562a6bbc28 752 SMART SM01008 206 292 1.2E-9 T 12-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead ALFP_2914 880c22a47c6b2930159a6e562a6bbc28 752 PIRSF PIRSF036389 5 744 2.9E-185 T 12-10-2018 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related ALFP_2788 d180cdfc1dc4b6e6c2e2bb92f6fcd726 242 Gene3D G3DSA:3.40.630.70 59 235 1.6E-62 T 12-10-2018 ALFP_2788 d180cdfc1dc4b6e6c2e2bb92f6fcd726 242 Gene3D G3DSA:2.30.210.20 5 58 9.4E-20 T 12-10-2018 ALFP_2788 d180cdfc1dc4b6e6c2e2bb92f6fcd726 242 SUPERFAMILY SSF55729 3 230 1.59E-83 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_2788 d180cdfc1dc4b6e6c2e2bb92f6fcd726 242 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 34 210 2.9E-70 T 12-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 ALFP_2788 d180cdfc1dc4b6e6c2e2bb92f6fcd726 242 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 36 220 7.5E-56 T 12-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 ALFP_2788 d180cdfc1dc4b6e6c2e2bb92f6fcd726 242 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 242 86.856 T 12-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 ALFP_2548 c9bb1f818617a741bdb90482bd877a50 107 Pfam PF11953 Domain of unknown function (DUF3470) 67 107 2.5E-16 T 12-10-2018 IPR022569 Ferredoxin, C-terminal ALFP_2548 c9bb1f818617a741bdb90482bd877a50 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site ALFP_2548 c9bb1f818617a741bdb90482bd877a50 107 Gene3D G3DSA:3.30.70.20 2 103 2.1E-31 T 12-10-2018 ALFP_2548 c9bb1f818617a741bdb90482bd877a50 107 Pfam PF00037 4Fe-4S binding domain 34 55 1.7E-6 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ALFP_2548 c9bb1f818617a741bdb90482bd877a50 107 SUPERFAMILY SSF54862 3 105 2.19E-22 T 12-10-2018 ALFP_2548 c9bb1f818617a741bdb90482bd877a50 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 2.7E-15 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 ALFP_2548 c9bb1f818617a741bdb90482bd877a50 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 2.7E-15 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 ALFP_2548 c9bb1f818617a741bdb90482bd877a50 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 2.7E-15 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 ALFP_1270 7c1f09b49b92add2ad10b4d05badcd9b 332 Gene3D G3DSA:3.40.190.10 105 206 8.8E-51 T 12-10-2018 ALFP_1270 7c1f09b49b92add2ad10b4d05badcd9b 332 SUPERFAMILY SSF53850 26 248 1.51E-44 T 12-10-2018 ALFP_1270 7c1f09b49b92add2ad10b4d05badcd9b 332 TIGRFAM TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein 29 324 1.5E-127 T 12-10-2018 IPR010068 Taurine ABC transporter, substrate-binding protein TauA GO:0015734|GO:0042597 ALFP_1270 7c1f09b49b92add2ad10b4d05badcd9b 332 Gene3D G3DSA:3.40.190.10 28 237 8.8E-51 T 12-10-2018 ALFP_1270 7c1f09b49b92add2ad10b4d05badcd9b 332 SMART SM00062 27 244 8.0E-5 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_1270 7c1f09b49b92add2ad10b4d05badcd9b 332 Pfam PF09084 NMT1/THI5 like 50 245 6.1E-21 T 12-10-2018 IPR015168 SsuA/THI5-like ALFP_1270 7c1f09b49b92add2ad10b4d05badcd9b 332 Gene3D G3DSA:1.10.8.450 238 276 8.8E-51 T 12-10-2018 ALFP_1975 eb86080d2d743fd7a36fac70c0c88b7e 859 Pfam PF08335 GlnD PII-uridylyltransferase 160 297 6.5E-29 T 12-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 ALFP_1975 eb86080d2d743fd7a36fac70c0c88b7e 859 SUPERFAMILY SSF109604 401 524 4.39E-14 T 12-10-2018 ALFP_1975 eb86080d2d743fd7a36fac70c0c88b7e 859 PIRSF PIRSF006288 1 859 2.4E-282 T 12-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 ALFP_1975 eb86080d2d743fd7a36fac70c0c88b7e 859 SUPERFAMILY SSF55021 782 838 4.16E-7 T 12-10-2018 ALFP_1975 eb86080d2d743fd7a36fac70c0c88b7e 859 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 859 276.318 T 12-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 ALFP_1975 eb86080d2d743fd7a36fac70c0c88b7e 859 SUPERFAMILY SSF81301 19 151 4.58E-16 T 12-10-2018 ALFP_1975 eb86080d2d743fd7a36fac70c0c88b7e 859 SUPERFAMILY SSF55021 670 726 7.91E-6 T 12-10-2018 ALFP_1975 eb86080d2d743fd7a36fac70c0c88b7e 859 Gene3D G3DSA:1.10.3210.10 417 548 1.2E-8 T 12-10-2018 ALFP_1975 eb86080d2d743fd7a36fac70c0c88b7e 859 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 15 846 3.5E-222 T 12-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 ALFP_1975 eb86080d2d743fd7a36fac70c0c88b7e 859 Pfam PF01966 HD domain 435 564 2.4E-9 T 12-10-2018 IPR006674 HD domain ALFP_1975 eb86080d2d743fd7a36fac70c0c88b7e 859 SMART SM00471 431 578 4.4E-7 T 12-10-2018 IPR003607 HD/PDEase domain ALFP_1975 eb86080d2d743fd7a36fac70c0c88b7e 859 Pfam PF01909 Nucleotidyltransferase domain 44 88 3.7E-5 T 12-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 ALFP_3068 25c8d3af221b9a0f5b605b7bc6e7f6da 408 SMART SM00363 346 407 8.0E-5 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3068 25c8d3af221b9a0f5b605b7bc6e7f6da 408 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 10 406 48.298 T 12-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 ALFP_3068 25c8d3af221b9a0f5b605b7bc6e7f6da 408 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 54 64 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_3068 25c8d3af221b9a0f5b605b7bc6e7f6da 408 Gene3D G3DSA:1.10.240.10 231 338 3.3E-33 T 12-10-2018 ALFP_3068 25c8d3af221b9a0f5b605b7bc6e7f6da 408 Gene3D G3DSA:3.40.50.620 11 230 7.4E-70 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_3068 25c8d3af221b9a0f5b605b7bc6e7f6da 408 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 223 235 9.8E-26 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 ALFP_3068 25c8d3af221b9a0f5b605b7bc6e7f6da 408 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 173 188 9.8E-26 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 ALFP_3068 25c8d3af221b9a0f5b605b7bc6e7f6da 408 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 190 212 9.8E-26 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 ALFP_3068 25c8d3af221b9a0f5b605b7bc6e7f6da 408 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 58 80 9.8E-26 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 ALFP_3068 25c8d3af221b9a0f5b605b7bc6e7f6da 408 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 17 405 7.7E-121 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 ALFP_3068 25c8d3af221b9a0f5b605b7bc6e7f6da 408 Gene3D G3DSA:3.10.290.10 339 406 2.7E-18 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 ALFP_3068 25c8d3af221b9a0f5b605b7bc6e7f6da 408 SUPERFAMILY SSF52374 19 328 1.01E-91 T 12-10-2018 ALFP_3068 25c8d3af221b9a0f5b605b7bc6e7f6da 408 SUPERFAMILY SSF55174 310 405 1.7E-19 T 12-10-2018 ALFP_3068 25c8d3af221b9a0f5b605b7bc6e7f6da 408 Pfam PF01479 S4 domain 348 390 1.2E-8 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3068 25c8d3af221b9a0f5b605b7bc6e7f6da 408 Pfam PF00579 tRNA synthetases class I (W and Y) 44 328 2.0E-74 T 12-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_0631 435e2ba8d7847d3a837cce171ee810e2 537 Pfam PF00005 ABC transporter 358 485 1.0E-17 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0631 435e2ba8d7847d3a837cce171ee810e2 537 SUPERFAMILY SSF52540 6 215 1.04E-37 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0631 435e2ba8d7847d3a837cce171ee810e2 537 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0631 435e2ba8d7847d3a837cce171ee810e2 537 Gene3D G3DSA:3.40.50.300 300 529 1.6E-36 T 12-10-2018 ALFP_0631 435e2ba8d7847d3a837cce171ee810e2 537 Gene3D G3DSA:3.40.50.300 1 253 5.1E-44 T 12-10-2018 ALFP_0631 435e2ba8d7847d3a837cce171ee810e2 537 Pfam PF00005 ABC transporter 31 171 9.2E-18 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0631 435e2ba8d7847d3a837cce171ee810e2 537 SMART SM00382 30 216 1.0E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0631 435e2ba8d7847d3a837cce171ee810e2 537 SMART SM00382 364 531 1.3E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0631 435e2ba8d7847d3a837cce171ee810e2 537 SUPERFAMILY SSF52540 358 517 5.41E-31 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1974 873bfb071de3ed7a55af7869156236ef 254 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 158 176 - T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 ALFP_1974 873bfb071de3ed7a55af7869156236ef 254 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 1 239 3.4E-90 T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 ALFP_1974 873bfb071de3ed7a55af7869156236ef 254 Pfam PF00557 Metallopeptidase family M24 1 232 1.4E-52 T 12-10-2018 IPR000994 Peptidase M24 ALFP_1974 873bfb071de3ed7a55af7869156236ef 254 Gene3D G3DSA:3.90.230.10 1 246 1.8E-100 T 12-10-2018 ALFP_1974 873bfb071de3ed7a55af7869156236ef 254 SUPERFAMILY SSF55920 1 239 4.97E-85 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like ALFP_1974 873bfb071de3ed7a55af7869156236ef 254 Hamap MF_01974 Methionine aminopeptidase [map]. 1 241 37.059 T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 ALFP_1974 873bfb071de3ed7a55af7869156236ef 254 PRINTS PR00599 Methionine aminopeptidase-1 signature 152 164 1.4E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 ALFP_1974 873bfb071de3ed7a55af7869156236ef 254 PRINTS PR00599 Methionine aminopeptidase-1 signature 183 195 1.4E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 ALFP_1974 873bfb071de3ed7a55af7869156236ef 254 PRINTS PR00599 Methionine aminopeptidase-1 signature 82 98 1.4E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 ALFP_1974 873bfb071de3ed7a55af7869156236ef 254 PRINTS PR00599 Methionine aminopeptidase-1 signature 60 73 1.4E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 ALFP_0179 f00809d60d8c084478da39701e8a4bd7 130 Pfam PF03466 LysR substrate binding domain 2 128 4.0E-10 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0179 f00809d60d8c084478da39701e8a4bd7 130 Gene3D G3DSA:3.40.190.10 2 100 3.4E-11 T 12-10-2018 ALFP_0179 f00809d60d8c084478da39701e8a4bd7 130 Gene3D G3DSA:3.40.190.10 101 116 3.4E-11 T 12-10-2018 ALFP_0179 f00809d60d8c084478da39701e8a4bd7 130 SUPERFAMILY SSF53850 2 129 7.6E-13 T 12-10-2018 ALFP_1580 41f6090095c908188d0007219b67f376 1055 Pfam PF07715 TonB-dependent Receptor Plug Domain 86 183 1.4E-10 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_1580 41f6090095c908188d0007219b67f376 1055 Pfam PF00593 TonB dependent receptor 402 1053 9.5E-24 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_1580 41f6090095c908188d0007219b67f376 1055 Gene3D G3DSA:2.170.130.10 72 199 8.8E-35 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_1580 41f6090095c908188d0007219b67f376 1055 SUPERFAMILY SSF56935 77 1055 1.25E-66 T 12-10-2018 ALFP_1580 41f6090095c908188d0007219b67f376 1055 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 1038 1055 - T 12-10-2018 IPR010917 TonB-dependent receptor, conserved site ALFP_1569 c801346689153d6b061e5dcbcfb01274 409 SUPERFAMILY SSF53756 1 409 2.48E-88 T 12-10-2018 ALFP_1569 c801346689153d6b061e5dcbcfb01274 409 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 235 377 6.0E-6 T 12-10-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0016758 Reactome: R-HSA-156588 ALFP_1569 c801346689153d6b061e5dcbcfb01274 409 Gene3D G3DSA:3.40.50.2000 226 394 1.4E-110 T 12-10-2018 ALFP_1569 c801346689153d6b061e5dcbcfb01274 409 Gene3D G3DSA:3.40.50.2000 3 225 1.4E-110 T 12-10-2018 ALFP_0001 8467affed21776600a6491db5f44bfbc 465 ProSitePatterns PS01008 DnaA protein signature. 423 442 - T 12-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 ALFP_0001 8467affed21776600a6491db5f44bfbc 465 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 2 464 31.633 T 12-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 ALFP_0001 8467affed21776600a6491db5f44bfbc 465 SUPERFAMILY SSF52540 129 340 4.36E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0001 8467affed21776600a6491db5f44bfbc 465 Gene3D G3DSA:3.30.300.180 2 104 2.0E-23 T 12-10-2018 IPR038454 DnaA, N-terminal domain superfamily ALFP_0001 8467affed21776600a6491db5f44bfbc 465 Gene3D G3DSA:3.40.50.300 127 294 6.3E-49 T 12-10-2018 ALFP_0001 8467affed21776600a6491db5f44bfbc 465 SMART SM00760 373 442 1.5E-42 T 12-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 ALFP_0001 8467affed21776600a6491db5f44bfbc 465 Gene3D G3DSA:1.10.1750.10 367 464 1.2E-34 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 ALFP_0001 8467affed21776600a6491db5f44bfbc 465 Gene3D G3DSA:1.10.8.60 295 366 2.0E-20 T 12-10-2018 ALFP_0001 8467affed21776600a6491db5f44bfbc 465 SMART SM00382 161 295 1.8E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0001 8467affed21776600a6491db5f44bfbc 465 SUPERFAMILY SSF48295 361 464 6.54E-36 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 ALFP_0001 8467affed21776600a6491db5f44bfbc 465 Pfam PF00308 Bacterial dnaA protein 129 346 2.7E-87 T 12-10-2018 IPR013317 Chromosomal replication initiator protein DnaA ALFP_0001 8467affed21776600a6491db5f44bfbc 465 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 374 442 1.9E-31 T 12-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 ALFP_0001 8467affed21776600a6491db5f44bfbc 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 194 208 3.4E-49 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like ALFP_0001 8467affed21776600a6491db5f44bfbc 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 226 240 3.4E-49 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like ALFP_0001 8467affed21776600a6491db5f44bfbc 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 260 287 3.4E-49 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like ALFP_0001 8467affed21776600a6491db5f44bfbc 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 162 182 3.4E-49 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like ALFP_0001 8467affed21776600a6491db5f44bfbc 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 423 442 3.4E-49 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like ALFP_0001 8467affed21776600a6491db5f44bfbc 465 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 5 463 4.8E-166 T 12-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 ALFP_0001 8467affed21776600a6491db5f44bfbc 465 Pfam PF11638 DnaA N-terminal domain 2 66 6.1E-19 T 12-10-2018 IPR024633 DnaA N-terminal domain ALFP_2926 834bec09d2510368c041566a2e85a5c1 475 SUPERFAMILY SSF53649 1 461 6.31E-82 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 ALFP_2926 834bec09d2510368c041566a2e85a5c1 475 Pfam PF16347 Domain of unknown function (DUF4976) 366 460 5.8E-8 T 12-10-2018 IPR032506 Domain of unknown function DUF4976 Reactome: R-HSA-2024096|Reactome: R-HSA-2206307 ALFP_2926 834bec09d2510368c041566a2e85a5c1 475 Gene3D G3DSA:3.40.720.10 1 467 1.6E-97 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 ALFP_2926 834bec09d2510368c041566a2e85a5c1 475 Pfam PF00884 Sulfatase 2 360 1.2E-34 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 Pfam PF01584 CheW-like domain 558 684 1.3E-24 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 307 368 8.8E-17 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 458 472 1.1E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 513 531 1.1E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 497 507 1.1E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 537 550 1.1E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 SUPERFAMILY SSF47226 7 129 3.18E-30 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 Gene3D G3DSA:1.20.120.160 4 145 3.2E-43 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 SMART SM00260 545 685 1.8E-37 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 SMART SM00387 413 553 3.7E-24 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 Gene3D G3DSA:3.30.565.10 368 552 1.6E-54 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 Gene3D G3DSA:2.40.50.180 576 640 1.1E-37 T 12-10-2018 ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 SUPERFAMILY SSF55052 167 231 6.54E-17 T 12-10-2018 IPR035891 CheY-binding domain of CheA ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 Gene3D G3DSA:3.30.70.400 151 231 5.5E-13 T 12-10-2018 IPR035891 CheY-binding domain of CheA ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 SUPERFAMILY SSF50341 552 684 1.44E-30 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 SMART SM01231 305 368 1.1E-21 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 SUPERFAMILY SSF55874 371 551 1.96E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 416 552 5.8E-17 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 Gene3D G3DSA:2.30.30.40 553 681 1.1E-37 T 12-10-2018 ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 Pfam PF01627 Hpt domain 10 96 2.1E-18 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 SUPERFAMILY SSF47384 307 369 8.63E-16 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 Pfam PF09078 CheY binding 169 230 1.1E-21 T 12-10-2018 IPR015162 CheY binding ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 SMART SM00073 7 105 2.7E-29 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 ALFP_1185 064a734a76acbfb54060d758528bfc3b 696 Gene3D G3DSA:1.10.287.560 305 367 9.6E-17 T 12-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 ALFP_0357 c373ecc12d3377695c8811cbbdf54cab 697 TIGRFAM TIGR00595 priA: primosomal protein N' 175 695 7.4E-168 T 12-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 ALFP_0357 c373ecc12d3377695c8811cbbdf54cab 697 Pfam PF00270 DEAD/DEAH box helicase 158 319 1.9E-10 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ALFP_0357 c373ecc12d3377695c8811cbbdf54cab 697 Gene3D G3DSA:1.10.8.630 18 124 2.9E-28 T 12-10-2018 ALFP_0357 c373ecc12d3377695c8811cbbdf54cab 697 SUPERFAMILY SSF52540 170 559 2.08E-38 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0357 c373ecc12d3377695c8811cbbdf54cab 697 Gene3D G3DSA:3.40.50.300 141 338 5.3E-69 T 12-10-2018 ALFP_0357 c373ecc12d3377695c8811cbbdf54cab 697 SMART SM00487 150 351 3.2E-12 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain ALFP_0357 c373ecc12d3377695c8811cbbdf54cab 697 Hamap MF_00983 Probable primosomal protein N' [priA]. 21 697 23.098 T 12-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 ALFP_0357 c373ecc12d3377695c8811cbbdf54cab 697 Pfam PF00271 Helicase conserved C-terminal domain 458 550 5.4E-6 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_0357 c373ecc12d3377695c8811cbbdf54cab 697 SMART SM00490 454 551 5.6E-7 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 Gene3D G3DSA:3.30.70.2570 479 553 5.7E-33 T 12-10-2018 IPR038363 LepA, C-terminal domain superfamily ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 302.48 T 12-10-2018 IPR006297 Elongation factor 4 GO:0005525 ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 Gene3D G3DSA:2.40.30.10 186 285 4.4E-33 T 12-10-2018 ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 Pfam PF06421 GTP-binding protein LepA C-terminus 487 593 1.1E-49 T 12-10-2018 IPR013842 GTP-binding protein LepA, C-terminal ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 176 5.9E-21 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 SUPERFAMILY SSF54980 399 493 1.29E-25 T 12-10-2018 IPR035647 EF-G domain III/V-like ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 Gene3D G3DSA:3.40.50.300 1 185 4.6E-72 T 12-10-2018 ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 Gene3D G3DSA:3.30.70.3380 368 478 2.3E-42 T 12-10-2018 ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 Pfam PF00009 Elongation factor Tu GTP binding domain 3 181 1.7E-52 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 SUPERFAMILY SSF54980 292 370 7.55E-19 T 12-10-2018 IPR035647 EF-G domain III/V-like ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 PRINTS PR00315 GTP-binding elongation factor signature 126 135 9.7E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 PRINTS PR00315 GTP-binding elongation factor signature 6 19 9.7E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 PRINTS PR00315 GTP-binding elongation factor signature 90 101 9.7E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 PRINTS PR00315 GTP-binding elongation factor signature 74 84 9.7E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 PRINTS PR00315 GTP-binding elongation factor signature 49 57 9.7E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 SUPERFAMILY SSF52540 2 205 9.85E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 Gene3D G3DSA:3.30.70.870 286 367 4.1E-36 T 12-10-2018 ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 TIGRFAM TIGR01393 lepA: elongation factor 4 3 595 2.0E-299 T 12-10-2018 IPR006297 Elongation factor 4 GO:0005525 ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 Pfam PF00679 Elongation factor G C-terminus 400 484 4.0E-21 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 SMART SM00838 401 485 0.0046 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 SUPERFAMILY SSF50447 165 288 1.5E-28 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily ALFP_2520 546a3c8f48d41d7f598dacd08ae7085c 597 Pfam PF03144 Elongation factor Tu domain 2 205 275 1.1E-9 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 ALFP_0595 01d7c77fdf6d545ce2db1ee817883029 494 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 20 449 1.8E-115 T 12-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 ALFP_0595 01d7c77fdf6d545ce2db1ee817883029 494 TIGRFAM TIGR03173 pbuX: xanthine permease 28 452 1.9E-152 T 12-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 ALFP_0595 01d7c77fdf6d545ce2db1ee817883029 494 Pfam PF00860 Permease family 25 415 3.7E-101 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 ALFP_1603 9d3175558b428fdf29b9217abac89c97 396 Gene3D G3DSA:3.30.390.10 47 381 7.4E-116 T 12-10-2018 IPR029017 Enolase-like, N-terminal ALFP_1603 9d3175558b428fdf29b9217abac89c97 396 SUPERFAMILY SSF51604 132 385 3.93E-60 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily ALFP_1603 9d3175558b428fdf29b9217abac89c97 396 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 210 241 - T 12-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 ALFP_1603 9d3175558b428fdf29b9217abac89c97 396 SMART SM00922 163 258 4.0E-15 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal ALFP_1603 9d3175558b428fdf29b9217abac89c97 396 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 30 144 3.6E-28 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain ALFP_1603 9d3175558b428fdf29b9217abac89c97 396 SUPERFAMILY SSF54826 21 145 1.62E-30 T 12-10-2018 ALFP_1603 9d3175558b428fdf29b9217abac89c97 396 Pfam PF13378 Enolase C-terminal domain-like 167 378 1.4E-44 T 12-10-2018 IPR029065 Enolase C-terminal domain-like ALFP_1603 9d3175558b428fdf29b9217abac89c97 396 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 119 144 - T 12-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 ALFP_1603 9d3175558b428fdf29b9217abac89c97 396 Gene3D G3DSA:3.20.20.120 137 370 7.4E-116 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily ALFP_1603 9d3175558b428fdf29b9217abac89c97 396 TIGRFAM TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisomerases 21 386 8.8E-164 T 12-10-2018 IPR013370 Muconate/chloromuconate cycloisomerase GO:0018849|GO:0018850|GO:0030145 ALFP_1718 53d51fbf65abc61cd6e27337d0d2d6c8 259 Pfam PF00005 ABC transporter 17 172 2.8E-20 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1718 53d51fbf65abc61cd6e27337d0d2d6c8 259 Gene3D G3DSA:3.40.50.300 1 248 1.8E-57 T 12-10-2018 ALFP_1718 53d51fbf65abc61cd6e27337d0d2d6c8 259 SUPERFAMILY SSF52540 2 231 1.03E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1718 53d51fbf65abc61cd6e27337d0d2d6c8 259 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 244 1.4E-109 T 12-10-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524 ALFP_1718 53d51fbf65abc61cd6e27337d0d2d6c8 259 SMART SM00382 26 223 4.7E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1718 53d51fbf65abc61cd6e27337d0d2d6c8 259 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0620 01c7b47e6d5484209754bfd41e07986c 316 SUPERFAMILY SSF53271 71 306 6.54E-66 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like ALFP_0620 01c7b47e6d5484209754bfd41e07986c 316 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 7 315 1.5E-120 T 12-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 ALFP_0620 01c7b47e6d5484209754bfd41e07986c 316 SMART SM01400 6 123 2.4E-71 T 12-10-2018 ALFP_0620 01c7b47e6d5484209754bfd41e07986c 316 Gene3D G3DSA:3.40.50.2020 9 303 7.3E-128 T 12-10-2018 ALFP_0620 01c7b47e6d5484209754bfd41e07986c 316 Gene3D G3DSA:3.40.50.2020 150 291 7.3E-128 T 12-10-2018 ALFP_0620 01c7b47e6d5484209754bfd41e07986c 316 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 6 315 48.337 T 12-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 ALFP_0620 01c7b47e6d5484209754bfd41e07986c 316 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 131 146 - T 12-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 ALFP_0620 01c7b47e6d5484209754bfd41e07986c 316 Pfam PF14572 Phosphoribosyl synthetase-associated domain 205 314 1.5E-30 T 12-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 ALFP_0620 01c7b47e6d5484209754bfd41e07986c 316 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 7 123 2.5E-46 T 12-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 ALFP_0619 b6a8ab76ec7ec75d9b8fdd5151abd580 312 PIRSF PIRSF010376 2 289 1.0E-81 T 12-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 ALFP_0619 b6a8ab76ec7ec75d9b8fdd5151abd580 312 SUPERFAMILY SSF54211 5 157 5.09E-47 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_0619 b6a8ab76ec7ec75d9b8fdd5151abd580 312 Gene3D G3DSA:3.30.70.890 161 310 3.7E-20 T 12-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily ALFP_0619 b6a8ab76ec7ec75d9b8fdd5151abd580 312 Pfam PF08544 GHMP kinases C terminal 221 266 2.1E-6 T 12-10-2018 IPR013750 GHMP kinase, C-terminal domain ALFP_0619 b6a8ab76ec7ec75d9b8fdd5151abd580 312 Pfam PF00288 GHMP kinases N terminal domain 87 144 3.3E-11 T 12-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 ALFP_0619 b6a8ab76ec7ec75d9b8fdd5151abd580 312 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 4 274 30.826 T 12-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 ALFP_0619 b6a8ab76ec7ec75d9b8fdd5151abd580 312 SUPERFAMILY SSF55060 161 266 1.63E-17 T 12-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily ALFP_0619 b6a8ab76ec7ec75d9b8fdd5151abd580 312 Gene3D G3DSA:3.30.230.10 1 160 2.4E-55 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ALFP_0619 b6a8ab76ec7ec75d9b8fdd5151abd580 312 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4 265 8.0E-68 T 12-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 ALFP_2314 9b7b9f4aea11d9d9eb064ed03f1fb0a6 309 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 52 75 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 ALFP_2314 9b7b9f4aea11d9d9eb064ed03f1fb0a6 309 Gene3D G3DSA:3.40.1190.20 3 309 2.0E-116 T 12-10-2018 IPR029056 Ribokinase-like ALFP_2314 9b7b9f4aea11d9d9eb064ed03f1fb0a6 309 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 9 308 1.3E-125 T 12-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 ALFP_2314 9b7b9f4aea11d9d9eb064ed03f1fb0a6 309 SUPERFAMILY SSF53613 13 308 4.37E-59 T 12-10-2018 IPR029056 Ribokinase-like ALFP_2314 9b7b9f4aea11d9d9eb064ed03f1fb0a6 309 Pfam PF00294 pfkB family carbohydrate kinase 13 302 3.0E-47 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB ALFP_3291 19d00476443d7a78f55b8ef98539ae8c 309 SUPERFAMILY SSF51735 6 298 1.22E-87 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3291 19d00476443d7a78f55b8ef98539ae8c 309 Gene3D G3DSA:3.90.25.10 164 273 2.4E-99 T 12-10-2018 ALFP_3291 19d00476443d7a78f55b8ef98539ae8c 309 Pfam PF04321 RmlD substrate binding domain 6 300 1.1E-93 T 12-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 ALFP_3291 19d00476443d7a78f55b8ef98539ae8c 309 Gene3D G3DSA:3.40.50.720 6 287 2.4E-99 T 12-10-2018 ALFP_3291 19d00476443d7a78f55b8ef98539ae8c 309 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 6 301 3.5E-93 T 12-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 ALFP_2446 004c9627853520d26841160e0d083491 308 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 173 197 - T 12-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 ALFP_2446 004c9627853520d26841160e0d083491 308 Gene3D G3DSA:3.40.1500.10 3 308 9.0E-130 T 12-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 ALFP_2446 004c9627853520d26841160e0d083491 308 PIRSF PIRSF000166 8 308 5.6E-121 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 ALFP_2446 004c9627853520d26841160e0d083491 308 SUPERFAMILY SSF102886 13 308 2.22E-129 T 12-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 ALFP_2446 004c9627853520d26841160e0d083491 308 PRINTS PR00073 Coprogen oxidase signature 241 268 5.7E-79 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 ALFP_2446 004c9627853520d26841160e0d083491 308 PRINTS PR00073 Coprogen oxidase signature 132 154 5.7E-79 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 ALFP_2446 004c9627853520d26841160e0d083491 308 PRINTS PR00073 Coprogen oxidase signature 53 74 5.7E-79 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 ALFP_2446 004c9627853520d26841160e0d083491 308 PRINTS PR00073 Coprogen oxidase signature 269 295 5.7E-79 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 ALFP_2446 004c9627853520d26841160e0d083491 308 PRINTS PR00073 Coprogen oxidase signature 169 198 5.7E-79 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 ALFP_2446 004c9627853520d26841160e0d083491 308 PRINTS PR00073 Coprogen oxidase signature 36 52 5.7E-79 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 ALFP_2446 004c9627853520d26841160e0d083491 308 PRINTS PR00073 Coprogen oxidase signature 95 119 5.7E-79 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 ALFP_2446 004c9627853520d26841160e0d083491 308 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 9 284 50.963 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 ALFP_2446 004c9627853520d26841160e0d083491 308 Pfam PF01218 Coproporphyrinogen III oxidase 15 308 8.3E-126 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 ALFP_3384 90362beaf3a49ac7c6456210090583d0 220 Gene3D G3DSA:3.40.50.300 1 217 2.0E-34 T 12-10-2018 ALFP_3384 90362beaf3a49ac7c6456210090583d0 220 ProSitePatterns PS00211 ABC transporters family signature. 125 139 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3384 90362beaf3a49ac7c6456210090583d0 220 SUPERFAMILY SSF52540 2 214 2.51E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3384 90362beaf3a49ac7c6456210090583d0 220 Pfam PF00005 ABC transporter 22 153 2.9E-13 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2381 6719f29759b2e6ed2607164696282498 425 Gene3D G3DSA:2.30.140.10 134 181 5.1E-8 T 12-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 ALFP_2381 6719f29759b2e6ed2607164696282498 425 SUPERFAMILY SSF53335 134 413 5.44E-73 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_2381 6719f29759b2e6ed2607164696282498 425 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 208 221 - T 12-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 ALFP_2381 6719f29759b2e6ed2607164696282498 425 SUPERFAMILY SSF56276 3 122 1.06E-22 T 12-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 ALFP_2381 6719f29759b2e6ed2607164696282498 425 Gene3D G3DSA:3.60.90.10 1 132 3.2E-33 T 12-10-2018 ALFP_2381 6719f29759b2e6ed2607164696282498 425 Gene3D G3DSA:3.40.50.150 183 422 1.4E-72 T 12-10-2018 ALFP_2381 6719f29759b2e6ed2607164696282498 425 Pfam PF01564 Spermine/spermidine synthase domain 187 361 2.6E-46 T 12-10-2018 ALFP_2381 6719f29759b2e6ed2607164696282498 425 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 119 415 34.877 T 12-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 ALFP_2381 6719f29759b2e6ed2607164696282498 425 Pfam PF02675 S-adenosylmethionine decarboxylase 5 122 1.6E-25 T 12-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 ALFP_2691 56861d8ed956db611fdb75a042a0247b 286 Pfam PF02653 Branched-chain amino acid transport system / permease component 3 270 1.7E-41 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_1704 88d5808a55bf3290ba341b92a7a09207 410 Gene3D G3DSA:1.20.1250.20 13 403 2.0E-42 T 12-10-2018 ALFP_1704 88d5808a55bf3290ba341b92a7a09207 410 Pfam PF07690 Major Facilitator Superfamily 23 367 5.1E-30 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_1704 88d5808a55bf3290ba341b92a7a09207 410 SUPERFAMILY SSF103473 16 403 1.96E-48 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2679 ced1b463ca85a287e34d789ce6668538 732 Pfam PF00593 TonB dependent receptor 277 730 1.8E-56 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_2679 ced1b463ca85a287e34d789ce6668538 732 Pfam PF07715 TonB-dependent Receptor Plug Domain 82 182 3.8E-14 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_2679 ced1b463ca85a287e34d789ce6668538 732 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 84 731 3.6E-100 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 ALFP_2679 ced1b463ca85a287e34d789ce6668538 732 Gene3D G3DSA:2.40.170.20 192 732 1.4E-180 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_2679 ced1b463ca85a287e34d789ce6668538 732 Gene3D G3DSA:2.170.130.10 59 191 4.3E-40 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_2679 ced1b463ca85a287e34d789ce6668538 732 SUPERFAMILY SSF56935 38 731 1.31E-122 T 12-10-2018 ALFP_0080 3e678a17aafbb9f99643bc23cce5b984 133 SUPERFAMILY SSF50249 20 107 2.74E-20 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_0080 3e678a17aafbb9f99643bc23cce5b984 133 Gene3D G3DSA:1.10.12.20 16 60 1.2E-5 T 12-10-2018 ALFP_0080 3e678a17aafbb9f99643bc23cce5b984 133 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 21 52 1.5E-12 T 12-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal ALFP_0080 3e678a17aafbb9f99643bc23cce5b984 133 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 57 109 4.1E-7 T 12-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal ALFP_0033 107be9d6f89be7e33e32f51ca68c3e06 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0033 107be9d6f89be7e33e32f51ca68c3e06 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0033 107be9d6f89be7e33e32f51ca68c3e06 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0033 107be9d6f89be7e33e32f51ca68c3e06 301 Gene3D G3DSA:3.40.190.10 166 265 3.9E-37 T 12-10-2018 ALFP_0033 107be9d6f89be7e33e32f51ca68c3e06 301 SUPERFAMILY SSF53850 95 296 1.05E-26 T 12-10-2018 ALFP_0033 107be9d6f89be7e33e32f51ca68c3e06 301 SUPERFAMILY SSF46785 3 85 1.59E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0033 107be9d6f89be7e33e32f51ca68c3e06 301 Gene3D G3DSA:3.40.190.10 103 291 3.9E-37 T 12-10-2018 ALFP_0033 107be9d6f89be7e33e32f51ca68c3e06 301 Pfam PF03466 LysR substrate binding domain 91 295 5.9E-25 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0033 107be9d6f89be7e33e32f51ca68c3e06 301 Gene3D G3DSA:1.10.10.10 6 90 3.6E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0033 107be9d6f89be7e33e32f51ca68c3e06 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 65 8.0E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3594 b5f22ad35b0e57b22a472d606672f0df 987 Gene3D G3DSA:1.20.1580.10 738 875 2.0E-139 T 12-10-2018 ALFP_3594 b5f22ad35b0e57b22a472d606672f0df 987 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 464 970 5.4E-264 T 12-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 ALFP_3594 b5f22ad35b0e57b22a472d606672f0df 987 ProSitePatterns PS00211 ABC transporters family signature. 875 889 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3594 b5f22ad35b0e57b22a472d606672f0df 987 SUPERFAMILY SSF52540 1 615 1.36E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3594 b5f22ad35b0e57b22a472d606672f0df 987 Gene3D G3DSA:3.40.50.300 660 981 2.0E-139 T 12-10-2018 ALFP_3594 b5f22ad35b0e57b22a472d606672f0df 987 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 985 21.94 T 12-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 ALFP_3594 b5f22ad35b0e57b22a472d606672f0df 987 ProSitePatterns PS00211 ABC transporters family signature. 533 547 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3594 b5f22ad35b0e57b22a472d606672f0df 987 SUPERFAMILY SSF52540 660 958 1.66E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3470 15071e6f4b2be1e607a4bccb83102263 288 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 154 273 1.2E-23 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 ALFP_3470 15071e6f4b2be1e607a4bccb83102263 288 SUPERFAMILY SSF48179 152 274 1.25E-27 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_3470 15071e6f4b2be1e607a4bccb83102263 288 SUPERFAMILY SSF51735 1 152 1.52E-33 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3470 15071e6f4b2be1e607a4bccb83102263 288 Gene3D G3DSA:1.10.1040.10 151 277 2.0E-31 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ALFP_3470 15071e6f4b2be1e607a4bccb83102263 288 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 1 151 1.2E-35 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 ALFP_3470 15071e6f4b2be1e607a4bccb83102263 288 PIRSF PIRSF000103 1 281 2.2E-64 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 ALFP_3470 15071e6f4b2be1e607a4bccb83102263 288 Gene3D G3DSA:3.40.50.720 1 150 4.5E-41 T 12-10-2018 ALFP_2793 1b61ec61a2589049b0d35ffdbbeb4aac 249 SUPERFAMILY SSF55781 60 245 1.18E-44 T 12-10-2018 ALFP_2793 1b61ec61a2589049b0d35ffdbbeb4aac 249 Pfam PF01614 Bacterial transcriptional regulator 121 240 4.7E-30 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal ALFP_2793 1b61ec61a2589049b0d35ffdbbeb4aac 249 Gene3D G3DSA:3.30.450.40 74 249 1.9E-50 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_2793 1b61ec61a2589049b0d35ffdbbeb4aac 249 Pfam PF09339 IclR helix-turn-helix domain 6 55 1.9E-12 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_2793 1b61ec61a2589049b0d35ffdbbeb4aac 249 SUPERFAMILY SSF46785 3 74 4.23E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2793 1b61ec61a2589049b0d35ffdbbeb4aac 249 Gene3D G3DSA:1.10.10.10 1 73 4.9E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2793 1b61ec61a2589049b0d35ffdbbeb4aac 249 SMART SM00346 3 92 3.5E-20 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_2140 cb0c14e385845ada1a77d96490c62576 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 218 1.8E-21 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_2140 cb0c14e385845ada1a77d96490c62576 226 SMART SM00862 145 218 3.5E-22 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_2140 cb0c14e385845ada1a77d96490c62576 226 Pfam PF00072 Response regulator receiver domain 3 112 1.4E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2140 cb0c14e385845ada1a77d96490c62576 226 Gene3D G3DSA:3.40.50.2300 1 121 1.3E-39 T 12-10-2018 ALFP_2140 cb0c14e385845ada1a77d96490c62576 226 Gene3D G3DSA:1.10.10.10 122 224 7.2E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2140 cb0c14e385845ada1a77d96490c62576 226 SMART SM00448 1 112 4.3E-41 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2140 cb0c14e385845ada1a77d96490c62576 226 SUPERFAMILY SSF52172 1 173 1.21E-39 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_3607 2a8675e268170facdff39a4425eec697 339 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 253 265 - T 12-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 ALFP_3607 2a8675e268170facdff39a4425eec697 339 SUPERFAMILY SSF51569 9 336 1.29E-141 T 12-10-2018 ALFP_3607 2a8675e268170facdff39a4425eec697 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 130 144 1.4E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 ALFP_3607 2a8675e268170facdff39a4425eec697 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 308 327 1.4E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 ALFP_3607 2a8675e268170facdff39a4425eec697 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 199 218 1.4E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 ALFP_3607 2a8675e268170facdff39a4425eec697 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 161 180 1.4E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 ALFP_3607 2a8675e268170facdff39a4425eec697 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 278 293 1.4E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 ALFP_3607 2a8675e268170facdff39a4425eec697 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 253 269 1.4E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 ALFP_3607 2a8675e268170facdff39a4425eec697 339 Gene3D G3DSA:3.20.20.70 5 338 2.1E-141 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_3607 2a8675e268170facdff39a4425eec697 339 PIRSF PIRSF001415 3 337 7.1E-145 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 ALFP_3607 2a8675e268170facdff39a4425eec697 339 Pfam PF00490 Delta-aminolevulinic acid dehydratase 13 332 3.0E-137 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 ALFP_3607 2a8675e268170facdff39a4425eec697 339 SMART SM01004 10 334 1.6E-229 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 ALFP_3169 492debb3e4f93d26736ddf455d1bf2cb 409 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 3 408 1.6E-111 T 12-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 ALFP_3169 492debb3e4f93d26736ddf455d1bf2cb 409 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 3 408 23.189 T 12-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 ALFP_3169 492debb3e4f93d26736ddf455d1bf2cb 409 Pfam PF03616 Sodium/glutamate symporter 3 376 2.2E-114 T 12-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 ALFP_1188 cd01de0c93943d40a672790bb122ae8d 280 PIRSF PIRSF000410 5 280 1.4E-84 T 12-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR ALFP_1188 cd01de0c93943d40a672790bb122ae8d 280 SUPERFAMILY SSF47757 12 87 2.75E-13 T 12-10-2018 ALFP_1188 cd01de0c93943d40a672790bb122ae8d 280 Gene3D G3DSA:1.10.155.10 13 86 1.1E-15 T 12-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily ALFP_1188 cd01de0c93943d40a672790bb122ae8d 280 PRINTS PR00996 Glutamate methyltransferase family signature 114 134 3.9E-37 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 ALFP_1188 cd01de0c93943d40a672790bb122ae8d 280 PRINTS PR00996 Glutamate methyltransferase family signature 148 164 3.9E-37 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 ALFP_1188 cd01de0c93943d40a672790bb122ae8d 280 PRINTS PR00996 Glutamate methyltransferase family signature 220 234 3.9E-37 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 ALFP_1188 cd01de0c93943d40a672790bb122ae8d 280 PRINTS PR00996 Glutamate methyltransferase family signature 239 262 3.9E-37 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 ALFP_1188 cd01de0c93943d40a672790bb122ae8d 280 PRINTS PR00996 Glutamate methyltransferase family signature 42 55 3.9E-37 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 ALFP_1188 cd01de0c93943d40a672790bb122ae8d 280 PRINTS PR00996 Glutamate methyltransferase family signature 81 93 3.9E-37 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 ALFP_1188 cd01de0c93943d40a672790bb122ae8d 280 SMART SM00138 20 280 5.3E-88 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 ALFP_1188 cd01de0c93943d40a672790bb122ae8d 280 SUPERFAMILY SSF53335 88 277 5.41E-54 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_1188 cd01de0c93943d40a672790bb122ae8d 280 Pfam PF03705 CheR methyltransferase, all-alpha domain 24 72 1.3E-5 T 12-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal ALFP_1188 cd01de0c93943d40a672790bb122ae8d 280 Pfam PF01739 CheR methyltransferase, SAM binding domain 88 277 8.0E-57 T 12-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal ALFP_1188 cd01de0c93943d40a672790bb122ae8d 280 Gene3D G3DSA:3.40.50.150 87 280 2.0E-64 T 12-10-2018 ALFP_2689 fe3fa37232b918f98967686aff0c5032 249 SUPERFAMILY SSF52540 5 235 4.17E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2689 fe3fa37232b918f98967686aff0c5032 249 SMART SM00382 31 213 6.0E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2689 fe3fa37232b918f98967686aff0c5032 249 Gene3D G3DSA:3.40.50.300 1 243 4.7E-57 T 12-10-2018 ALFP_2689 fe3fa37232b918f98967686aff0c5032 249 Pfam PF00005 ABC transporter 24 164 8.6E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3684 c1c6c3339c5637efce91d548268e3adb 231 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 12-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3684 c1c6c3339c5637efce91d548268e3adb 231 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 43.715 T 12-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 ALFP_3684 c1c6c3339c5637efce91d548268e3adb 231 Gene3D G3DSA:3.40.50.790 68 159 7.0E-78 T 12-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich ALFP_3684 c1c6c3339c5637efce91d548268e3adb 231 Gene3D G3DSA:3.30.190.20 25 221 7.0E-78 T 12-10-2018 ALFP_3684 c1c6c3339c5637efce91d548268e3adb 231 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 1.4E-103 T 12-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 ALFP_3684 c1c6c3339c5637efce91d548268e3adb 231 SUPERFAMILY SSF56808 6 225 4.84E-81 T 12-10-2018 IPR023674 Ribosomal protein L1-like ALFP_3684 c1c6c3339c5637efce91d548268e3adb 231 PIRSF PIRSF002155 1 227 3.1E-77 T 12-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3684 c1c6c3339c5637efce91d548268e3adb 231 Pfam PF00687 Ribosomal protein L1p/L10e family 31 219 7.1E-51 T 12-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein ALFP_0097 acc1130eb07a7df13e08201d9972d294 845 Gene3D G3DSA:3.55.50.30 58 160 8.9E-25 T 12-10-2018 ALFP_0097 acc1130eb07a7df13e08201d9972d294 845 Pfam PF07715 TonB-dependent Receptor Plug Domain 183 283 5.8E-17 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_0097 acc1130eb07a7df13e08201d9972d294 845 Gene3D G3DSA:2.40.170.20 291 845 4.4E-179 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_0097 acc1130eb07a7df13e08201d9972d294 845 Pfam PF00593 TonB dependent receptor 398 843 9.1E-58 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_0097 acc1130eb07a7df13e08201d9972d294 845 Gene3D G3DSA:2.170.130.10 161 290 5.7E-40 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_0097 acc1130eb07a7df13e08201d9972d294 845 SMART SM00965 87 138 1.5E-9 T 12-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 ALFP_0097 acc1130eb07a7df13e08201d9972d294 845 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 185 844 2.7E-127 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 ALFP_0097 acc1130eb07a7df13e08201d9972d294 845 SUPERFAMILY SSF56935 141 844 1.05E-135 T 12-10-2018 ALFP_3622 2ec2c991a8be501cd0963a63e530160a 173 SUPERFAMILY SSF54211 86 166 8.09E-25 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_3622 2ec2c991a8be501cd0963a63e530160a 173 Pfam PF00333 Ribosomal protein S5, N-terminal domain 18 82 6.3E-25 T 12-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 ALFP_3622 2ec2c991a8be501cd0963a63e530160a 173 Gene3D G3DSA:3.30.160.20 9 80 1.2E-26 T 12-10-2018 ALFP_3622 2ec2c991a8be501cd0963a63e530160a 173 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 17 170 5.0E-64 T 12-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 ALFP_3622 2ec2c991a8be501cd0963a63e530160a 173 Gene3D G3DSA:3.30.230.10 81 173 4.9E-36 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ALFP_3622 2ec2c991a8be501cd0963a63e530160a 173 SUPERFAMILY SSF54768 15 83 8.27E-21 T 12-10-2018 ALFP_3622 2ec2c991a8be501cd0963a63e530160a 173 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 170 34.282 T 12-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 ALFP_3622 2ec2c991a8be501cd0963a63e530160a 173 Pfam PF03719 Ribosomal protein S5, C-terminal domain 94 164 3.5E-28 T 12-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 Gene3D G3DSA:1.10.150.390 1315 1376 1.5E-28 T 12-10-2018 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 Pfam PF04997 RNA polymerase Rpb1, domain 1 15 342 6.0E-86 T 12-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1315 6.8E-77 T 12-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 Gene3D G3DSA:2.40.50.100 1151 1214 3.5E-66 T 12-10-2018 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 11 1380 18.756 T 12-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 393 5.6E-8 T 12-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 Pfam PF00623 RNA polymerase Rpb1, domain 2 396 485 1.9E-26 T 12-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 SUPERFAMILY SSF64484 16 1362 0.0 T 12-10-2018 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 Gene3D G3DSA:2.40.50.100 948 1023 2.8E-26 T 12-10-2018 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1364 0.0 T 12-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 Gene3D G3DSA:2.40.50.100 1024 1126 7.1E-29 T 12-10-2018 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 Gene3D G3DSA:1.10.40.90 374 416 5.7E-20 T 12-10-2018 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 Gene3D G3DSA:1.10.274.100 490 563 9.4E-18 T 12-10-2018 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 Gene3D G3DSA:1.10.274.100 564 640 3.1E-15 T 12-10-2018 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 644 1.2E-20 T 12-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 Gene3D G3DSA:1.10.1790.20 1135 1313 3.5E-66 T 12-10-2018 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 SMART SM00663 235 514 9.7E-173 T 12-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 1.6E-18 T 12-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3680 622faa9af8d937edded88d71c642dc1b 1420 Gene3D G3DSA:1.10.132.30 641 790 5.2E-64 T 12-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_2720 7a5e6ac828a9ee3880ac6d0280a744ce 913 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_2720 7a5e6ac828a9ee3880ac6d0280a744ce 913 Pfam PF00005 ABC transporter 25 172 4.1E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2720 7a5e6ac828a9ee3880ac6d0280a744ce 913 Pfam PF00005 ABC transporter 289 433 5.9E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2720 7a5e6ac828a9ee3880ac6d0280a744ce 913 Gene3D G3DSA:3.40.50.300 266 510 9.6E-65 T 12-10-2018 ALFP_2720 7a5e6ac828a9ee3880ac6d0280a744ce 913 Gene3D G3DSA:3.40.50.300 3 254 1.2E-58 T 12-10-2018 ALFP_2720 7a5e6ac828a9ee3880ac6d0280a744ce 913 SUPERFAMILY SSF52540 268 496 1.24E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2720 7a5e6ac828a9ee3880ac6d0280a744ce 913 SMART SM00382 34 261 0.018 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2720 7a5e6ac828a9ee3880ac6d0280a744ce 913 SMART SM00382 298 483 2.7E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2720 7a5e6ac828a9ee3880ac6d0280a744ce 913 SUPERFAMILY SSF52540 14 236 7.26E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2720 7a5e6ac828a9ee3880ac6d0280a744ce 913 Pfam PF12698 ABC-2 family transporter protein 571 904 9.2E-40 T 12-10-2018 ALFP_1630 e2d3d3c52252644f2a7fed71adc43a68 555 SMART SM00990 437 551 2.0E-38 T 12-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 ALFP_1630 e2d3d3c52252644f2a7fed71adc43a68 555 Pfam PF08774 VRR-NUC domain 441 550 2.4E-29 T 12-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 ALFP_1630 e2d3d3c52252644f2a7fed71adc43a68 555 Gene3D G3DSA:3.40.1350.10 466 551 5.3E-7 T 12-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 ALFP_3724 632f58b57e474c32b67f3ace056057f0 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 286 301 1.9E-22 T 12-10-2018 ALFP_3724 632f58b57e474c32b67f3ace056057f0 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 1.9E-22 T 12-10-2018 ALFP_3724 632f58b57e474c32b67f3ace056057f0 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 1.9E-22 T 12-10-2018 ALFP_3724 632f58b57e474c32b67f3ace056057f0 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 301 317 1.9E-22 T 12-10-2018 ALFP_3724 632f58b57e474c32b67f3ace056057f0 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 335 351 1.9E-22 T 12-10-2018 ALFP_3724 632f58b57e474c32b67f3ace056057f0 405 Gene3D G3DSA:3.50.50.60 9 381 2.9E-124 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_3724 632f58b57e474c32b67f3ace056057f0 405 SUPERFAMILY SSF51905 9 373 1.2E-66 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_3724 632f58b57e474c32b67f3ace056057f0 405 Pfam PF01494 FAD binding domain 8 346 8.4E-29 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 ALFP_3724 632f58b57e474c32b67f3ace056057f0 405 SUPERFAMILY SSF54373 180 279 2.75E-17 T 12-10-2018 ALFP_2157 b512d75251b99d19384aa013db612a26 161 Pfam PF13404 AsnC-type helix-turn-helix domain 15 59 4.5E-9 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 ALFP_2157 b512d75251b99d19384aa013db612a26 161 Gene3D G3DSA:3.30.70.3460 79 158 2.7E-17 T 12-10-2018 ALFP_2157 b512d75251b99d19384aa013db612a26 161 ProSitePatterns PS00519 AsnC-type HTH domain signature. 36 62 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site ALFP_2157 b512d75251b99d19384aa013db612a26 161 SMART SM00344 15 123 0.0018 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 ALFP_2157 b512d75251b99d19384aa013db612a26 161 Gene3D G3DSA:1.10.10.10 15 67 5.5E-8 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2157 b512d75251b99d19384aa013db612a26 161 SUPERFAMILY SSF46785 15 77 1.13E-6 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0671 ad49c5e6930c3c99d471794bc3a5f40f 168 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 24 163 3.3E-37 T 12-10-2018 ALFP_0671 ad49c5e6930c3c99d471794bc3a5f40f 168 Gene3D G3DSA:1.10.10.1590 16 81 1.5E-9 T 12-10-2018 ALFP_0671 ad49c5e6930c3c99d471794bc3a5f40f 168 SUPERFAMILY SSF52833 25 163 6.15E-41 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_0671 ad49c5e6930c3c99d471794bc3a5f40f 168 PIRSF PIRSF000216 2 168 1.2E-40 T 12-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_0671 ad49c5e6930c3c99d471794bc3a5f40f 168 Gene3D G3DSA:3.40.30.10 82 163 5.6E-20 T 12-10-2018 ALFP_2400 4b11c91526e6a7eb0f24838e51c53a5c 396 Pfam PF00909 Ammonium Transporter Family 2 394 7.6E-115 T 12-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 ALFP_2400 4b11c91526e6a7eb0f24838e51c53a5c 396 SUPERFAMILY SSF111352 1 370 1.57E-116 T 12-10-2018 ALFP_2400 4b11c91526e6a7eb0f24838e51c53a5c 396 ProSitePatterns PS01219 Ammonium transporters signature. 149 174 - T 12-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 ALFP_2400 4b11c91526e6a7eb0f24838e51c53a5c 396 Gene3D G3DSA:1.10.3430.10 1 396 5.0E-130 T 12-10-2018 IPR029020 Ammonium/urea transporter ALFP_2400 4b11c91526e6a7eb0f24838e51c53a5c 396 PRINTS PR00342 Rhesus blood group protein signature 219 241 1.3E-6 T 12-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 ALFP_2400 4b11c91526e6a7eb0f24838e51c53a5c 396 PRINTS PR00342 Rhesus blood group protein signature 274 292 1.3E-6 T 12-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 ALFP_2400 4b11c91526e6a7eb0f24838e51c53a5c 396 PRINTS PR00342 Rhesus blood group protein signature 88 104 1.3E-6 T 12-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 ALFP_2400 4b11c91526e6a7eb0f24838e51c53a5c 396 PRINTS PR00342 Rhesus blood group protein signature 188 206 1.3E-6 T 12-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 ALFP_2400 4b11c91526e6a7eb0f24838e51c53a5c 396 TIGRFAM TIGR00836 amt: ammonium transporter 2 394 1.6E-125 T 12-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 ALFP_3242 0fa4c17659c5bc70a889619fe400c3e1 152 Gene3D G3DSA:3.40.1350.10 41 152 2.1E-26 T 12-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 ALFP_3242 0fa4c17659c5bc70a889619fe400c3e1 152 Hamap MF_00048 UPF0102 protein YraN [yraN]. 35 150 19.342 T 12-10-2018 IPR003509 Uncharacterised protein family UPF0102 ALFP_3242 0fa4c17659c5bc70a889619fe400c3e1 152 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 36 151 2.9E-25 T 12-10-2018 IPR003509 Uncharacterised protein family UPF0102 ALFP_3242 0fa4c17659c5bc70a889619fe400c3e1 152 Pfam PF02021 Uncharacterised protein family UPF0102 42 137 1.2E-22 T 12-10-2018 IPR003509 Uncharacterised protein family UPF0102 ALFP_3242 0fa4c17659c5bc70a889619fe400c3e1 152 SUPERFAMILY SSF52980 37 147 1.43E-13 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 ALFP_2947 a01de4aaa9084db46c8e5810a414e2a0 104 SUPERFAMILY SSF50022 2 100 7.59E-28 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_2947 a01de4aaa9084db46c8e5810a414e2a0 104 Gene3D G3DSA:2.102.10.10 1 104 1.9E-31 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_2947 a01de4aaa9084db46c8e5810a414e2a0 104 Pfam PF00355 Rieske [2Fe-2S] domain 2 89 5.1E-17 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ALFP_2543 479399223e3208146da4ceecf30f2799 277 Pfam PF00290 Tryptophan synthase alpha chain 16 257 2.5E-83 T 12-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 ALFP_2543 479399223e3208146da4ceecf30f2799 277 Gene3D G3DSA:3.20.20.70 2 277 4.0E-92 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_2543 479399223e3208146da4ceecf30f2799 277 SUPERFAMILY SSF51366 7 249 7.38E-83 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 ALFP_2543 479399223e3208146da4ceecf30f2799 277 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 16 249 4.2E-71 T 12-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 ALFP_2543 479399223e3208146da4ceecf30f2799 277 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 15 274 33.6 T 12-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 ALFP_1022 1ff6841a212e0a3fad17ebbb23e376b0 640 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 426 630 7.6E-39 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_1022 1ff6841a212e0a3fad17ebbb23e376b0 640 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 40 317 4.4E-35 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_2391 e09b98c8e454e267ccca48dddd613e3b 232 SUPERFAMILY SSF81342 6 186 1.26E-32 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 ALFP_2391 e09b98c8e454e267ccca48dddd613e3b 232 Pfam PF01292 Prokaryotic cytochrome b561 12 181 8.3E-17 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 ALFP_2391 e09b98c8e454e267ccca48dddd613e3b 232 Gene3D G3DSA:1.20.950.20 2 170 1.2E-15 T 12-10-2018 ALFP_0970 a06bbc3e24d2f8970af4760f9f6ec702 527 Pfam PF03741 Integral membrane protein TerC family 14 203 1.1E-44 T 12-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 ALFP_0970 a06bbc3e24d2f8970af4760f9f6ec702 527 SMART SM01091 430 515 6.6E-23 T 12-10-2018 IPR005170 Transporter-associated domain ALFP_0970 a06bbc3e24d2f8970af4760f9f6ec702 527 Pfam PF03471 Transporter associated domain 431 513 5.7E-21 T 12-10-2018 IPR005170 Transporter-associated domain ALFP_0970 a06bbc3e24d2f8970af4760f9f6ec702 527 Pfam PF00571 CBS domain 368 417 4.1E-5 T 12-10-2018 IPR000644 CBS domain ALFP_0970 a06bbc3e24d2f8970af4760f9f6ec702 527 SUPERFAMILY SSF56176 427 518 3.27E-19 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 ALFP_0970 a06bbc3e24d2f8970af4760f9f6ec702 527 SUPERFAMILY SSF54631 286 420 3.29E-21 T 12-10-2018 ALFP_0970 a06bbc3e24d2f8970af4760f9f6ec702 527 Gene3D G3DSA:3.10.580.10 280 434 6.3E-45 T 12-10-2018 ALFP_0970 a06bbc3e24d2f8970af4760f9f6ec702 527 Gene3D G3DSA:3.30.465.10 436 515 8.4E-17 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 ALFP_2839 e3d5c16d05f161599986af9daefe0e90 188 SUPERFAMILY SSF55811 4 163 8.67E-31 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 ALFP_2839 e3d5c16d05f161599986af9daefe0e90 188 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.2E-5 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 ALFP_2839 e3d5c16d05f161599986af9daefe0e90 188 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.2E-5 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 ALFP_2839 e3d5c16d05f161599986af9daefe0e90 188 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 37.772 T 12-10-2018 IPR022927 RNA pyrophosphohydrolase RppH ALFP_2839 e3d5c16d05f161599986af9daefe0e90 188 Pfam PF00293 NUDIX domain 7 138 1.6E-22 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 ALFP_2839 e3d5c16d05f161599986af9daefe0e90 188 Gene3D G3DSA:3.90.79.10 1 158 1.6E-44 T 12-10-2018 ALFP_2839 e3d5c16d05f161599986af9daefe0e90 188 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 ALFP_3508 22d90b8399cbe4de9ef6a7e7356f84b2 334 Gene3D G3DSA:2.60.120.1440 118 256 6.7E-28 T 12-10-2018 ALFP_3508 22d90b8399cbe4de9ef6a7e7356f84b2 334 PIRSF PIRSF018266 8 332 1.2E-93 T 12-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component ALFP_3508 22d90b8399cbe4de9ef6a7e7356f84b2 334 Pfam PF04773 FecR protein 127 220 7.9E-22 T 12-10-2018 IPR006860 FecR protein ALFP_3508 22d90b8399cbe4de9ef6a7e7356f84b2 334 Pfam PF16220 Domain of unknown function (DUF4880) 20 60 1.1E-11 T 12-10-2018 IPR032623 FecR, N-terminal ALFP_2782 26373254a92f3d2b675dbceb611dfd65 250 Pfam PF01925 Sulfite exporter TauE/SafE 10 239 2.4E-25 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 ALFP_1446 a64c70276126ed9a127c9725825f11c9 215 SUPERFAMILY SSF48498 72 212 6.45E-28 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily ALFP_1446 a64c70276126ed9a127c9725825f11c9 215 SUPERFAMILY SSF46689 8 68 3.36E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1446 a64c70276126ed9a127c9725825f11c9 215 Gene3D G3DSA:1.10.10.60 8 57 3.8E-23 T 12-10-2018 ALFP_1446 a64c70276126ed9a127c9725825f11c9 215 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 74 210 2.2E-21 T 12-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 ALFP_1446 a64c70276126ed9a127c9725825f11c9 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 2.5E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1446 a64c70276126ed9a127c9725825f11c9 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 2.5E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1446 a64c70276126ed9a127c9725825f11c9 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 57 7.0E-11 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1446 a64c70276126ed9a127c9725825f11c9 215 Gene3D G3DSA:1.10.357.10 58 211 6.7E-32 T 12-10-2018 ALFP_1446 a64c70276126ed9a127c9725825f11c9 215 ProSitePatterns PS01081 TetR-type HTH domain signature. 25 56 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site ALFP_1446 a64c70276126ed9a127c9725825f11c9 215 PRINTS PR00400 Tetracycline repressor protein signature 77 96 1.7E-21 T 12-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 ALFP_1446 a64c70276126ed9a127c9725825f11c9 215 PRINTS PR00400 Tetracycline repressor protein signature 25 48 1.7E-21 T 12-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 ALFP_1446 a64c70276126ed9a127c9725825f11c9 215 PRINTS PR00400 Tetracycline repressor protein signature 97 120 1.7E-21 T 12-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 ALFP_1446 a64c70276126ed9a127c9725825f11c9 215 PRINTS PR00400 Tetracycline repressor protein signature 133 152 1.7E-21 T 12-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 ALFP_1446 a64c70276126ed9a127c9725825f11c9 215 PRINTS PR00400 Tetracycline repressor protein signature 193 207 1.7E-21 T 12-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 ALFP_0515 585d950f6dbf6fc6654888e8f8571521 331 PIRSF PIRSF018266 11 330 4.6E-80 T 12-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component ALFP_0515 585d950f6dbf6fc6654888e8f8571521 331 Pfam PF16220 Domain of unknown function (DUF4880) 17 59 1.5E-12 T 12-10-2018 IPR032623 FecR, N-terminal ALFP_0515 585d950f6dbf6fc6654888e8f8571521 331 Pfam PF16344 Domain of unknown function (DUF4974) 234 321 2.5E-8 T 12-10-2018 IPR032508 Protein FecR, C-terminal ALFP_0515 585d950f6dbf6fc6654888e8f8571521 331 Pfam PF04773 FecR protein 121 212 5.7E-18 T 12-10-2018 IPR006860 FecR protein ALFP_0515 585d950f6dbf6fc6654888e8f8571521 331 Gene3D G3DSA:3.55.50.30 254 330 5.0E-7 T 12-10-2018 ALFP_0515 585d950f6dbf6fc6654888e8f8571521 331 Gene3D G3DSA:2.60.120.1440 111 253 4.7E-23 T 12-10-2018 ALFP_0030 5a56dc863d913c9e73573e63c9b7591d 340 Gene3D G3DSA:2.40.30.10 18 120 1.8E-28 T 12-10-2018 ALFP_0030 5a56dc863d913c9e73573e63c9b7591d 340 Pfam PF00175 Oxidoreductase NAD-binding domain 132 224 4.7E-7 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ALFP_0030 5a56dc863d913c9e73573e63c9b7591d 340 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 263 331 5.0E-10 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_0030 5a56dc863d913c9e73573e63c9b7591d 340 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 291 299 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ALFP_0030 5a56dc863d913c9e73573e63c9b7591d 340 Gene3D G3DSA:3.40.50.80 121 240 5.4E-29 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_0030 5a56dc863d913c9e73573e63c9b7591d 340 Gene3D G3DSA:3.10.20.30 248 340 1.2E-20 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_0030 5a56dc863d913c9e73573e63c9b7591d 340 SUPERFAMILY SSF54292 230 339 1.44E-23 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_0030 5a56dc863d913c9e73573e63c9b7591d 340 PRINTS PR00409 Phthalate dioxygenase reductase family signature 109 123 3.4E-46 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_0030 5a56dc863d913c9e73573e63c9b7591d 340 PRINTS PR00409 Phthalate dioxygenase reductase family signature 59 71 3.4E-46 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_0030 5a56dc863d913c9e73573e63c9b7591d 340 PRINTS PR00409 Phthalate dioxygenase reductase family signature 95 109 3.4E-46 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_0030 5a56dc863d913c9e73573e63c9b7591d 340 PRINTS PR00409 Phthalate dioxygenase reductase family signature 131 150 3.4E-46 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_0030 5a56dc863d913c9e73573e63c9b7591d 340 PRINTS PR00409 Phthalate dioxygenase reductase family signature 49 59 3.4E-46 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_0030 5a56dc863d913c9e73573e63c9b7591d 340 PRINTS PR00409 Phthalate dioxygenase reductase family signature 210 218 3.4E-46 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_0030 5a56dc863d913c9e73573e63c9b7591d 340 PRINTS PR00409 Phthalate dioxygenase reductase family signature 71 85 3.4E-46 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_0030 5a56dc863d913c9e73573e63c9b7591d 340 PRINTS PR00409 Phthalate dioxygenase reductase family signature 156 165 3.4E-46 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_0030 5a56dc863d913c9e73573e63c9b7591d 340 SUPERFAMILY SSF63380 22 119 3.05E-27 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_0030 5a56dc863d913c9e73573e63c9b7591d 340 SUPERFAMILY SSF52343 120 238 3.4E-28 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_3702 c3c2837e049b8d4a647c5b70ccfc6b1e 262 Pfam PF02567 Phenazine biosynthesis-like protein 8 257 7.4E-62 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 ALFP_3702 c3c2837e049b8d4a647c5b70ccfc6b1e 262 PIRSF PIRSF016184 1 261 3.5E-58 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 ALFP_3702 c3c2837e049b8d4a647c5b70ccfc6b1e 262 Gene3D G3DSA:3.10.310.10 117 249 2.7E-96 T 12-10-2018 ALFP_3702 c3c2837e049b8d4a647c5b70ccfc6b1e 262 SUPERFAMILY SSF54506 1 260 7.46E-84 T 12-10-2018 ALFP_3702 c3c2837e049b8d4a647c5b70ccfc6b1e 262 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 1 219 6.0E-39 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 ALFP_3702 c3c2837e049b8d4a647c5b70ccfc6b1e 262 Gene3D G3DSA:3.10.310.10 5 253 2.7E-96 T 12-10-2018 ALFP_0421 a739b8fe0b5c7ec5a4e2b66866d86e36 384 SUPERFAMILY SSF81891 148 327 2.22E-29 T 12-10-2018 ALFP_0421 a739b8fe0b5c7ec5a4e2b66866d86e36 384 Pfam PF01743 Poly A polymerase head domain 30 148 1.6E-15 T 12-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 ALFP_0421 a739b8fe0b5c7ec5a4e2b66866d86e36 384 Gene3D G3DSA:3.30.460.10 24 148 3.8E-27 T 12-10-2018 ALFP_0421 a739b8fe0b5c7ec5a4e2b66866d86e36 384 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 175 236 2.5E-8 T 12-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 ALFP_0421 a739b8fe0b5c7ec5a4e2b66866d86e36 384 PIRSF PIRSF000813 263 384 1.7E-8 T 12-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 ALFP_0421 a739b8fe0b5c7ec5a4e2b66866d86e36 384 PIRSF PIRSF000813 28 265 2.7E-103 T 12-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 ALFP_0421 a739b8fe0b5c7ec5a4e2b66866d86e36 384 SUPERFAMILY SSF81301 27 146 4.03E-29 T 12-10-2018 ALFP_0421 a739b8fe0b5c7ec5a4e2b66866d86e36 384 Gene3D G3DSA:1.10.3090.10 149 380 8.7E-27 T 12-10-2018 ALFP_2075 c1b842957a65d4c7214008d926896d6a 488 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 6 474 40.994 T 12-10-2018 IPR003846 Uncharacterised protein family UPF0061 ALFP_2075 c1b842957a65d4c7214008d926896d6a 488 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 11 456 1.5E-136 T 12-10-2018 IPR003846 Uncharacterised protein family UPF0061 ALFP_2561 90daabdb38bad64d9a24f40f8547e677 87 Gene3D G3DSA:3.30.300.90 1 87 3.7E-26 T 12-10-2018 ALFP_2561 90daabdb38bad64d9a24f40f8547e677 87 Pfam PF01722 BolA-like protein 14 86 1.6E-26 T 12-10-2018 IPR002634 BolA protein ALFP_2561 90daabdb38bad64d9a24f40f8547e677 87 PIRSF PIRSF003113 2 87 1.5E-23 T 12-10-2018 IPR002634 BolA protein ALFP_2561 90daabdb38bad64d9a24f40f8547e677 87 SUPERFAMILY SSF82657 5 86 4.05E-21 T 12-10-2018 IPR036065 BolA-like superfamily ALFP_0218 d7b8e95f20d8714b89fdf6cc6b84328e 259 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0218 d7b8e95f20d8714b89fdf6cc6b84328e 259 PIRSF PIRSF039085 6 259 5.9E-113 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 ALFP_0218 d7b8e95f20d8714b89fdf6cc6b84328e 259 Gene3D G3DSA:3.40.50.300 6 258 7.7E-77 T 12-10-2018 ALFP_0218 d7b8e95f20d8714b89fdf6cc6b84328e 259 SMART SM00382 34 232 6.1E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0218 d7b8e95f20d8714b89fdf6cc6b84328e 259 SUPERFAMILY SSF52540 10 254 1.09E-74 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0218 d7b8e95f20d8714b89fdf6cc6b84328e 259 Pfam PF00005 ABC transporter 25 184 2.7E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0532 7c5b532905a19aee0a90cdbd62a77a08 284 SUPERFAMILY SSF46689 232 277 8.96E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0532 7c5b532905a19aee0a90cdbd62a77a08 284 Gene3D G3DSA:1.10.10.60 178 284 4.6E-22 T 12-10-2018 ALFP_0532 7c5b532905a19aee0a90cdbd62a77a08 284 SUPERFAMILY SSF46689 179 230 3.49E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0532 7c5b532905a19aee0a90cdbd62a77a08 284 SMART SM00342 196 278 1.3E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0532 7c5b532905a19aee0a90cdbd62a77a08 284 Pfam PF12852 Cupin 4 162 5.0E-27 T 12-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain ALFP_0532 7c5b532905a19aee0a90cdbd62a77a08 284 Pfam PF12833 Helix-turn-helix domain 202 279 1.0E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_3597 3ae0e2457e5ca512d63c57cc729183f2 201 PRINTS PR01100 Shikimate kinase family signature 104 113 9.4E-26 T 12-10-2018 ALFP_3597 3ae0e2457e5ca512d63c57cc729183f2 201 PRINTS PR01100 Shikimate kinase family signature 86 94 9.4E-26 T 12-10-2018 ALFP_3597 3ae0e2457e5ca512d63c57cc729183f2 201 PRINTS PR01100 Shikimate kinase family signature 58 71 9.4E-26 T 12-10-2018 ALFP_3597 3ae0e2457e5ca512d63c57cc729183f2 201 PRINTS PR01100 Shikimate kinase family signature 34 49 9.4E-26 T 12-10-2018 ALFP_3597 3ae0e2457e5ca512d63c57cc729183f2 201 PRINTS PR01100 Shikimate kinase family signature 125 142 9.4E-26 T 12-10-2018 ALFP_3597 3ae0e2457e5ca512d63c57cc729183f2 201 SUPERFAMILY SSF52540 31 195 1.11E-29 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3597 3ae0e2457e5ca512d63c57cc729183f2 201 Pfam PF01202 Shikimate kinase 40 196 8.0E-51 T 12-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 ALFP_3597 3ae0e2457e5ca512d63c57cc729183f2 201 Hamap MF_00109 Shikimate kinase [aroK]. 31 197 29.058 T 12-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 ALFP_3597 3ae0e2457e5ca512d63c57cc729183f2 201 Gene3D G3DSA:3.40.50.300 28 200 2.3E-54 T 12-10-2018 ALFP_3597 3ae0e2457e5ca512d63c57cc729183f2 201 ProSitePatterns PS01128 Shikimate kinase signature. 87 112 - T 12-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 ALFP_1367 e2dbb87475c2c938b5e4072e681ef6c5 176 Gene3D G3DSA:3.40.50.300 5 154 8.1E-9 T 12-10-2018 ALFP_1367 e2dbb87475c2c938b5e4072e681ef6c5 176 SUPERFAMILY SSF52540 9 120 4.2E-12 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1837 c709c296e34909e0ec6d13d442fc590e 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.4E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1837 c709c296e34909e0ec6d13d442fc590e 304 Gene3D G3DSA:3.40.190.10 195 272 6.3E-6 T 12-10-2018 ALFP_1837 c709c296e34909e0ec6d13d442fc590e 304 SUPERFAMILY SSF53850 91 299 1.25E-18 T 12-10-2018 ALFP_1837 c709c296e34909e0ec6d13d442fc590e 304 Gene3D G3DSA:3.40.190.10 85 193 2.3E-5 T 12-10-2018 ALFP_1837 c709c296e34909e0ec6d13d442fc590e 304 SUPERFAMILY SSF46785 4 86 4.46E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1837 c709c296e34909e0ec6d13d442fc590e 304 Gene3D G3DSA:1.10.10.10 3 84 4.9E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1837 c709c296e34909e0ec6d13d442fc590e 304 Pfam PF03466 LysR substrate binding domain 88 301 3.1E-20 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 Gene3D G3DSA:1.20.120.790 502 633 1.7E-43 T 12-10-2018 IPR037196 HSP90, C-terminal domain ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 Gene3D G3DSA:3.30.230.80 238 410 6.0E-69 T 12-10-2018 ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 Hamap MF_00505 Chaperone protein HtpG [htpG]. 8 632 32.962 T 12-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 PRINTS PR00775 90kDa heat shock protein signature 195 213 5.0E-60 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 PRINTS PR00775 90kDa heat shock protein signature 32 54 5.0E-60 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 PRINTS PR00775 90kDa heat shock protein signature 99 116 5.0E-60 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 PRINTS PR00775 90kDa heat shock protein signature 11 31 5.0E-60 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 PRINTS PR00775 90kDa heat shock protein signature 177 194 5.0E-60 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 PRINTS PR00775 90kDa heat shock protein signature 81 98 5.0E-60 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 PRINTS PR00775 90kDa heat shock protein signature 126 148 5.0E-60 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 SMART SM00387 33 189 5.0E-7 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 Pfam PF00183 Hsp90 protein 219 631 6.9E-133 T 12-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 33 187 1.1E-13 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 SUPERFAMILY SSF55874 10 221 1.02E-69 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 31 40 - T 12-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 PIRSF PIRSF002583 1 634 4.3E-221 T 12-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 Gene3D G3DSA:3.40.50.11260 411 501 8.7E-33 T 12-10-2018 ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 SUPERFAMILY SSF54211 239 494 2.88E-99 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 SUPERFAMILY SSF110942 520 632 6.15E-35 T 12-10-2018 IPR037196 HSP90, C-terminal domain ALFP_0536 4d8438f2b8e1301f3a003592c644e94d 634 Gene3D G3DSA:3.30.565.10 2 234 4.7E-79 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_0953 64d3f74c8cf81ebf80e6be28850656b9 342 SUPERFAMILY SSF53850 128 301 8.03E-8 T 12-10-2018 ALFP_0953 64d3f74c8cf81ebf80e6be28850656b9 342 Gene3D G3DSA:3.40.190.150 45 332 1.1E-109 T 12-10-2018 ALFP_0953 64d3f74c8cf81ebf80e6be28850656b9 342 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 64 338 8.1E-85 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0953 64d3f74c8cf81ebf80e6be28850656b9 342 Gene3D G3DSA:3.40.190.10 143 266 1.1E-109 T 12-10-2018 ALFP_0953 64d3f74c8cf81ebf80e6be28850656b9 342 PIRSF PIRSF017082 12 342 1.7E-76 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_1752 cff82aabec8227f99e19d3b3f7890cf5 131 Pfam PF02082 Transcriptional regulator 1 82 3.0E-20 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type ALFP_1752 cff82aabec8227f99e19d3b3f7890cf5 131 Gene3D G3DSA:1.10.10.10 1 131 1.1E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1752 cff82aabec8227f99e19d3b3f7890cf5 131 SUPERFAMILY SSF46785 3 130 8.03E-33 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1752 cff82aabec8227f99e19d3b3f7890cf5 131 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 4.4E-28 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type ALFP_1347 1213376dc9cf94269c70fef3e3762301 782 Gene3D G3DSA:3.30.70.100 683 764 1.2E-7 T 12-10-2018 ALFP_1347 1213376dc9cf94269c70fef3e3762301 782 Pfam PF00924 Mechanosensitive ion channel 562 760 8.6E-40 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 ALFP_1347 1213376dc9cf94269c70fef3e3762301 782 SUPERFAMILY SSF82861 521 602 6.67E-8 T 12-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 ALFP_1347 1213376dc9cf94269c70fef3e3762301 782 SUPERFAMILY SSF50182 604 669 1.63E-15 T 12-10-2018 IPR010920 LSM domain superfamily ALFP_1347 1213376dc9cf94269c70fef3e3762301 782 SUPERFAMILY SSF82689 686 763 1.96E-10 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 ALFP_1347 1213376dc9cf94269c70fef3e3762301 782 Gene3D G3DSA:2.30.30.60 619 668 1.8E-11 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily ALFP_2206 eee3546b597619807e1042aa4743b036 775 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 159 701 1.5E-196 T 12-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 ALFP_2206 eee3546b597619807e1042aa4743b036 775 Gene3D G3DSA:3.90.1170.50 17 138 8.3E-277 T 12-10-2018 ALFP_2206 eee3546b597619807e1042aa4743b036 775 Gene3D G3DSA:3.30.365.10 457 603 8.3E-277 T 12-10-2018 ALFP_2206 eee3546b597619807e1042aa4743b036 775 SUPERFAMILY SSF54665 11 139 2.75E-39 T 12-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily ALFP_2206 eee3546b597619807e1042aa4743b036 775 Gene3D G3DSA:3.30.365.10 186 280 8.3E-277 T 12-10-2018 ALFP_2206 eee3546b597619807e1042aa4743b036 775 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 31 138 9.0E-27 T 12-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead ALFP_2206 eee3546b597619807e1042aa4743b036 775 Gene3D G3DSA:3.30.365.10 152 405 8.3E-277 T 12-10-2018 ALFP_2206 eee3546b597619807e1042aa4743b036 775 Gene3D G3DSA:3.30.365.10 139 767 8.3E-277 T 12-10-2018 ALFP_2206 eee3546b597619807e1042aa4743b036 775 SUPERFAMILY SSF56003 138 769 6.02E-201 T 12-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 ALFP_2206 eee3546b597619807e1042aa4743b036 775 SMART SM01008 31 138 1.3E-47 T 12-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead ALFP_2206 eee3546b597619807e1042aa4743b036 775 TIGRFAM TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit 18 772 0.0 T 12-10-2018 IPR014309 Xanthine dehydrogenase, molybdopterin binding subunit GO:0030151 KEGG: 00230+1.17.1.4+1.17.3.2|KEGG: 00232+1.17.3.2|KEGG: 00983+1.17.3.2|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 ALFP_1529 dfc6af45bbe0906274bff91350db9544 304 Gene3D G3DSA:3.40.190.10 91 291 4.1E-70 T 12-10-2018 ALFP_1529 dfc6af45bbe0906274bff91350db9544 304 SUPERFAMILY SSF53850 88 298 3.26E-35 T 12-10-2018 ALFP_1529 dfc6af45bbe0906274bff91350db9544 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.8E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1529 dfc6af45bbe0906274bff91350db9544 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.8E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1529 dfc6af45bbe0906274bff91350db9544 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.8E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1529 dfc6af45bbe0906274bff91350db9544 304 Pfam PF03466 LysR substrate binding domain 88 292 2.8E-31 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1529 dfc6af45bbe0906274bff91350db9544 304 Gene3D G3DSA:1.10.10.10 1 90 3.0E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1529 dfc6af45bbe0906274bff91350db9544 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 2.9E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1529 dfc6af45bbe0906274bff91350db9544 304 Gene3D G3DSA:3.40.190.10 163 268 4.1E-70 T 12-10-2018 ALFP_1529 dfc6af45bbe0906274bff91350db9544 304 SUPERFAMILY SSF46785 6 111 8.38E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1186 81b0a943db8d61bb49490077b20b196b 166 Gene3D G3DSA:2.30.30.40 20 147 8.9E-38 T 12-10-2018 ALFP_1186 81b0a943db8d61bb49490077b20b196b 166 Gene3D G3DSA:2.40.50.180 37 148 8.9E-38 T 12-10-2018 ALFP_1186 81b0a943db8d61bb49490077b20b196b 166 Pfam PF01584 CheW-like domain 18 156 2.4E-34 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 ALFP_1186 81b0a943db8d61bb49490077b20b196b 166 SMART SM00260 14 153 1.0E-43 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 ALFP_1186 81b0a943db8d61bb49490077b20b196b 166 SUPERFAMILY SSF50341 17 158 1.07E-36 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 ALFP_3555 6b942aa084fbe9f6fc0f845cc3adcfc8 445 Pfam PF07804 HipA-like C-terminal domain 163 399 2.2E-40 T 12-10-2018 IPR012893 HipA-like, C-terminal ALFP_3555 6b942aa084fbe9f6fc0f845cc3adcfc8 445 Pfam PF13657 HipA N-terminal domain 17 116 6.9E-6 T 12-10-2018 IPR017508 HipA, N-terminal subdomain 1 ALFP_2117 8c67ac18997c5bb0aab239b2a1e8614c 506 Pfam PF00171 Aldehyde dehydrogenase family 24 486 1.5E-138 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_2117 8c67ac18997c5bb0aab239b2a1e8614c 506 Gene3D G3DSA:3.40.309.10 254 459 6.8E-149 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_2117 8c67ac18997c5bb0aab239b2a1e8614c 506 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 ALFP_2117 8c67ac18997c5bb0aab239b2a1e8614c 506 Gene3D G3DSA:3.40.605.10 28 467 6.8E-149 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_2117 8c67ac18997c5bb0aab239b2a1e8614c 506 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 10 490 2.3E-201 T 12-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 ALFP_2117 8c67ac18997c5bb0aab239b2a1e8614c 506 SUPERFAMILY SSF53720 6 489 8.38E-146 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_1964 2ce5b08602d1c4632981c8344669f333 169 Gene3D G3DSA:3.30.910.20 26 167 2.4E-39 T 12-10-2018 IPR024930 Skp domain superfamily ALFP_1964 2ce5b08602d1c4632981c8344669f333 169 SMART SM00935 16 168 1.6E-53 T 12-10-2018 IPR005632 Chaperone protein Skp GO:0051082 ALFP_1964 2ce5b08602d1c4632981c8344669f333 169 SUPERFAMILY SSF111384 27 167 6.15E-34 T 12-10-2018 ALFP_1964 2ce5b08602d1c4632981c8344669f333 169 Pfam PF03938 Outer membrane protein (OmpH-like) 13 167 9.0E-35 T 12-10-2018 IPR005632 Chaperone protein Skp GO:0051082 ALFP_1964 2ce5b08602d1c4632981c8344669f333 169 PIRSF PIRSF002094 4 169 7.1E-50 T 12-10-2018 IPR005632 Chaperone protein Skp GO:0051082 ALFP_2349 1b80aa57aa8e43502098058bb5ea7b60 498 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 60 1.6E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2349 1b80aa57aa8e43502098058bb5ea7b60 498 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 60 76 1.6E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2349 1b80aa57aa8e43502098058bb5ea7b60 498 SMART SM00345 27 86 1.1E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2349 1b80aa57aa8e43502098058bb5ea7b60 498 Gene3D G3DSA:3.40.640.10 121 484 7.0E-111 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2349 1b80aa57aa8e43502098058bb5ea7b60 498 Gene3D G3DSA:1.10.10.10 22 120 4.9E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2349 1b80aa57aa8e43502098058bb5ea7b60 498 Pfam PF00392 Bacterial regulatory proteins, gntR family 25 86 1.3E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2349 1b80aa57aa8e43502098058bb5ea7b60 498 SUPERFAMILY SSF53383 126 492 2.02E-87 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2349 1b80aa57aa8e43502098058bb5ea7b60 498 SUPERFAMILY SSF46785 21 88 2.72E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2349 1b80aa57aa8e43502098058bb5ea7b60 498 Pfam PF00155 Aminotransferase class I and II 157 485 2.3E-19 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_2411 d2d8d1617f90e744b1d82408b0a54cd3 695 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 468 596 2.5E-35 T 12-10-2018 IPR025299 CstA, C-terminal domain ALFP_2411 d2d8d1617f90e744b1d82408b0a54cd3 695 Pfam PF02554 Carbon starvation protein CstA 37 414 3.7E-174 T 12-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 ALFP_0275 6db32f48e2b8825bfac2e40dd57ebfc3 599 SUPERFAMILY SSF141868 6 240 4.58E-55 T 12-10-2018 IPR035919 EAL domain superfamily ALFP_0275 6db32f48e2b8825bfac2e40dd57ebfc3 599 Pfam PF00563 EAL domain 6 237 2.1E-42 T 12-10-2018 IPR001633 EAL domain ALFP_0275 6db32f48e2b8825bfac2e40dd57ebfc3 599 SMART SM00052 2 242 7.6E-27 T 12-10-2018 IPR001633 EAL domain ALFP_0275 6db32f48e2b8825bfac2e40dd57ebfc3 599 SUPERFAMILY SSF54631 268 367 4.18E-5 T 12-10-2018 ALFP_0275 6db32f48e2b8825bfac2e40dd57ebfc3 599 Gene3D G3DSA:3.30.70.270 407 584 5.6E-26 T 12-10-2018 ALFP_0275 6db32f48e2b8825bfac2e40dd57ebfc3 599 Gene3D G3DSA:3.10.580.10 267 406 4.7E-5 T 12-10-2018 ALFP_0275 6db32f48e2b8825bfac2e40dd57ebfc3 599 SUPERFAMILY SSF55073 410 578 1.73E-22 T 12-10-2018 IPR029787 Nucleotide cyclase ALFP_0275 6db32f48e2b8825bfac2e40dd57ebfc3 599 SMART SM00267 396 580 4.0E-12 T 12-10-2018 IPR000160 GGDEF domain ALFP_0275 6db32f48e2b8825bfac2e40dd57ebfc3 599 Pfam PF00990 Diguanylate cyclase, GGDEF domain 409 511 2.4E-15 T 12-10-2018 IPR000160 GGDEF domain ALFP_0275 6db32f48e2b8825bfac2e40dd57ebfc3 599 Gene3D G3DSA:3.20.20.450 2 230 3.5E-55 T 12-10-2018 IPR035919 EAL domain superfamily ALFP_0275 6db32f48e2b8825bfac2e40dd57ebfc3 599 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 420 577 6.5E-15 T 12-10-2018 IPR000160 GGDEF domain ALFP_0424 b902eec8e5def57b7b260cd8d673b0d7 189 SUPERFAMILY SSF53335 3 153 1.24E-27 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_0424 b902eec8e5def57b7b260cd8d673b0d7 189 Gene3D G3DSA:3.40.50.150 2 165 1.1E-24 T 12-10-2018 ALFP_0424 b902eec8e5def57b7b260cd8d673b0d7 189 Pfam PF13649 Methyltransferase domain 24 106 1.4E-9 T 12-10-2018 ALFP_2137 317170c1f3a7adb42e554eac491b618f 211 Pfam PF01965 DJ-1/PfpI family 2 174 3.7E-15 T 12-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 ALFP_2137 317170c1f3a7adb42e554eac491b618f 211 Gene3D G3DSA:3.40.50.880 1 208 2.3E-47 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_2137 317170c1f3a7adb42e554eac491b618f 211 SUPERFAMILY SSF52317 1 194 1.03E-33 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_1890 dffb251bab21d52a3239ec51ee2df1bc 280 SUPERFAMILY SSF48179 171 279 9.52E-32 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_1890 dffb251bab21d52a3239ec51ee2df1bc 280 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 10 103 1.4E-10 T 12-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal ALFP_1890 dffb251bab21d52a3239ec51ee2df1bc 280 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 11 275 8.8E-75 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 ALFP_1890 dffb251bab21d52a3239ec51ee2df1bc 280 Gene3D G3DSA:1.10.3730.10 173 280 1.2E-38 T 12-10-2018 ALFP_1890 dffb251bab21d52a3239ec51ee2df1bc 280 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 173 275 1.8E-33 T 12-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 ALFP_1890 dffb251bab21d52a3239ec51ee2df1bc 280 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 9 275 24.953 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 ALFP_1890 dffb251bab21d52a3239ec51ee2df1bc 280 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 231 253 - T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 ALFP_1890 dffb251bab21d52a3239ec51ee2df1bc 280 Gene3D G3DSA:3.40.50.720 8 172 8.2E-41 T 12-10-2018 ALFP_1890 dffb251bab21d52a3239ec51ee2df1bc 280 PIRSF PIRSF000193 8 278 3.0E-69 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 ALFP_1890 dffb251bab21d52a3239ec51ee2df1bc 280 SUPERFAMILY SSF51735 10 168 6.29E-33 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2534 2cfa346ce37f88b07a718a3473a57517 184 Hamap MF_00528 Septum formation protein Maf [maf]. 1 174 20.705 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 ALFP_2534 2cfa346ce37f88b07a718a3473a57517 184 Gene3D G3DSA:3.90.950.10 1 177 1.5E-44 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like ALFP_2534 2cfa346ce37f88b07a718a3473a57517 184 Pfam PF02545 Maf-like protein 2 169 4.3E-34 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 ALFP_2534 2cfa346ce37f88b07a718a3473a57517 184 SUPERFAMILY SSF52972 1 169 1.31E-42 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like ALFP_2534 2cfa346ce37f88b07a718a3473a57517 184 PIRSF PIRSF006305 1 176 1.1E-34 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 ALFP_1835 0eaa4268d38a983b78ecf619bf1fdd16 315 Gene3D G3DSA:3.40.630.10 13 313 6.4E-52 T 12-10-2018 ALFP_1835 0eaa4268d38a983b78ecf619bf1fdd16 315 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 31 178 3.6E-14 T 12-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 ALFP_1835 0eaa4268d38a983b78ecf619bf1fdd16 315 SUPERFAMILY SSF53187 3 310 3.64E-55 T 12-10-2018 ALFP_1212 3a47d3aa24849a0d3d52426137412cae 479 SMART SM00304 81 133 5.1E-13 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 ALFP_1212 3a47d3aa24849a0d3d52426137412cae 479 Pfam PF00672 HAMP domain 81 129 2.5E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 ALFP_1212 3a47d3aa24849a0d3d52426137412cae 479 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 193 348 1.1E-53 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 ALFP_1212 3a47d3aa24849a0d3d52426137412cae 479 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 155 184 1.6E-56 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1212 3a47d3aa24849a0d3d52426137412cae 479 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 309 338 1.6E-56 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1212 3a47d3aa24849a0d3d52426137412cae 479 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 261 290 1.6E-56 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1212 3a47d3aa24849a0d3d52426137412cae 479 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 232 259 1.6E-56 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1212 3a47d3aa24849a0d3d52426137412cae 479 SMART SM00283 134 381 4.7E-86 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 ALFP_1212 3a47d3aa24849a0d3d52426137412cae 479 Gene3D G3DSA:1.10.287.950 81 382 3.2E-89 T 12-10-2018 ALFP_1212 3a47d3aa24849a0d3d52426137412cae 479 SUPERFAMILY SSF58104 101 382 2.22E-72 T 12-10-2018 ALFP_0901 5d5b039bdcc9945531bd25984d0e48b7 496 Pfam PF02541 Ppx/GppA phosphatase family 22 305 9.6E-71 T 12-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 ALFP_0901 5d5b039bdcc9945531bd25984d0e48b7 496 Gene3D G3DSA:3.30.420.150 113 292 1.8E-79 T 12-10-2018 ALFP_0901 5d5b039bdcc9945531bd25984d0e48b7 496 PIRSF PIRSF001267 1 495 9.7E-175 T 12-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 ALFP_0901 5d5b039bdcc9945531bd25984d0e48b7 496 SUPERFAMILY SSF53067 5 129 2.22E-31 T 12-10-2018 ALFP_0901 5d5b039bdcc9945531bd25984d0e48b7 496 Gene3D G3DSA:1.10.3210.10 307 495 3.0E-48 T 12-10-2018 ALFP_0901 5d5b039bdcc9945531bd25984d0e48b7 496 SUPERFAMILY SSF109604 310 486 3.45E-36 T 12-10-2018 ALFP_0901 5d5b039bdcc9945531bd25984d0e48b7 496 Gene3D G3DSA:3.30.420.40 6 300 1.8E-79 T 12-10-2018 ALFP_0901 5d5b039bdcc9945531bd25984d0e48b7 496 SUPERFAMILY SSF53067 134 305 1.68E-41 T 12-10-2018 ALFP_2969 3267cd2d4432410c3fc7964f4861d041 253 SUPERFAMILY SSF53335 75 216 1.11E-14 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_2969 3267cd2d4432410c3fc7964f4861d041 253 Gene3D G3DSA:3.40.50.150 48 189 6.9E-16 T 12-10-2018 ALFP_2969 3267cd2d4432410c3fc7964f4861d041 253 Pfam PF08241 Methyltransferase domain 74 125 1.6E-8 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 ALFP_1710 42a584b099906467bbc156eb99db033c 801 Pfam PF01588 Putative tRNA binding domain 45 145 1.5E-24 T 12-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 ALFP_1710 42a584b099906467bbc156eb99db033c 801 Pfam PF03484 tRNA synthetase B5 domain 404 469 3.6E-18 T 12-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 ALFP_1710 42a584b099906467bbc156eb99db033c 801 Gene3D G3DSA:3.50.40.10 197 394 2.5E-69 T 12-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 ALFP_1710 42a584b099906467bbc156eb99db033c 801 SMART SM00896 703 800 4.6E-24 T 12-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 ALFP_1710 42a584b099906467bbc156eb99db033c 801 Gene3D G3DSA:3.30.930.10 491 693 1.5E-60 T 12-10-2018 ALFP_1710 42a584b099906467bbc156eb99db033c 801 SMART SM00873 212 385 2.6E-78 T 12-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 ALFP_1710 42a584b099906467bbc156eb99db033c 801 SUPERFAMILY SSF54991 698 800 1.44E-19 T 12-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 ALFP_1710 42a584b099906467bbc156eb99db033c 801 Gene3D G3DSA:3.30.56.10 4 181 3.7E-72 T 12-10-2018 ALFP_1710 42a584b099906467bbc156eb99db033c 801 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 800 2.5E-230 T 12-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 ALFP_1710 42a584b099906467bbc156eb99db033c 801 SMART SM00874 401 469 2.8E-27 T 12-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 ALFP_1710 42a584b099906467bbc156eb99db033c 801 Pfam PF03483 B3/4 domain 213 385 1.7E-59 T 12-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 ALFP_1710 42a584b099906467bbc156eb99db033c 801 Gene3D G3DSA:2.40.50.140 39 154 3.7E-72 T 12-10-2018 ALFP_1710 42a584b099906467bbc156eb99db033c 801 SUPERFAMILY SSF56037 195 391 1.54E-64 T 12-10-2018 ALFP_1710 42a584b099906467bbc156eb99db033c 801 Pfam PF03147 Ferredoxin-fold anticodon binding domain 703 800 7.1E-23 T 12-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 ALFP_1710 42a584b099906467bbc156eb99db033c 801 SUPERFAMILY SSF46955 401 473 1.1E-18 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily ALFP_1710 42a584b099906467bbc156eb99db033c 801 SUPERFAMILY SSF55681 465 691 2.48E-51 T 12-10-2018 ALFP_1710 42a584b099906467bbc156eb99db033c 801 Gene3D G3DSA:3.30.70.380 704 800 1.2E-17 T 12-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 ALFP_1710 42a584b099906467bbc156eb99db033c 801 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 794 42.755 T 12-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 ALFP_1710 42a584b099906467bbc156eb99db033c 801 Gene3D G3DSA:3.30.56.10 401 473 1.5E-23 T 12-10-2018 ALFP_1710 42a584b099906467bbc156eb99db033c 801 SUPERFAMILY SSF50249 36 198 2.45E-52 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2301 f465e735121a085ced8c2612d8a99237 91 SUPERFAMILY SSF82649 4 54 6.8E-5 T 12-10-2018 ALFP_2301 f465e735121a085ced8c2612d8a99237 91 Gene3D G3DSA:3.30.390.50 1 87 2.5E-21 T 12-10-2018 ALFP_2301 f465e735121a085ced8c2612d8a99237 91 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 6 57 3.0E-5 T 12-10-2018 IPR019491 Lipoate protein ligase, C-terminal KEGG: 00785+6.3.1.20 ALFP_2389 d07f98b41ef5a4525a7ac271c8a31ed8 223 Gene3D G3DSA:3.40.50.10990 28 199 1.7E-73 T 12-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 ALFP_2389 d07f98b41ef5a4525a7ac271c8a31ed8 223 Pfam PF00925 GTP cyclohydrolase II 33 195 5.4E-67 T 12-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 ALFP_2389 d07f98b41ef5a4525a7ac271c8a31ed8 223 SUPERFAMILY SSF142695 27 198 4.71E-65 T 12-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 ALFP_2389 d07f98b41ef5a4525a7ac271c8a31ed8 223 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 32 219 4.9E-78 T 12-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 ALFP_2389 d07f98b41ef5a4525a7ac271c8a31ed8 223 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 26 221 43.756 T 12-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 ALFP_1039 f69a64b1b75d40bbb69af6d4b0dd7cc3 238 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 8 112 1.8E-33 T 12-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1039 f69a64b1b75d40bbb69af6d4b0dd7cc3 238 Gene3D G3DSA:3.10.20.30 1 107 2.2E-38 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_1039 f69a64b1b75d40bbb69af6d4b0dd7cc3 238 SUPERFAMILY SSF46548 108 236 5.58E-39 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 ALFP_1039 f69a64b1b75d40bbb69af6d4b0dd7cc3 238 Pfam PF13534 4Fe-4S dicluster domain 148 221 4.7E-10 T 12-10-2018 ALFP_1039 f69a64b1b75d40bbb69af6d4b0dd7cc3 238 Gene3D G3DSA:1.10.1060.10 108 238 5.3E-57 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 ALFP_1039 f69a64b1b75d40bbb69af6d4b0dd7cc3 238 SUPERFAMILY SSF54292 5 107 1.64E-30 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_1039 f69a64b1b75d40bbb69af6d4b0dd7cc3 238 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 11 230 1.4E-84 T 12-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1039 f69a64b1b75d40bbb69af6d4b0dd7cc3 238 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site ALFP_3330 93db2c9846d1fb4cab4bb53cb70fcbd6 227 Gene3D G3DSA:3.40.50.2300 1 121 7.3E-36 T 12-10-2018 ALFP_3330 93db2c9846d1fb4cab4bb53cb70fcbd6 227 SMART SM00448 1 112 5.5E-38 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_3330 93db2c9846d1fb4cab4bb53cb70fcbd6 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 219 3.9E-16 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_3330 93db2c9846d1fb4cab4bb53cb70fcbd6 227 SMART SM00862 145 219 3.7E-15 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_3330 93db2c9846d1fb4cab4bb53cb70fcbd6 227 Pfam PF00072 Response regulator receiver domain 3 113 4.9E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_3330 93db2c9846d1fb4cab4bb53cb70fcbd6 227 Gene3D G3DSA:1.10.10.10 124 225 2.9E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3330 93db2c9846d1fb4cab4bb53cb70fcbd6 227 SUPERFAMILY SSF52172 1 166 8.11E-38 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_0409 11f836bca5d76059edc93450e6bf3373 346 PRINTS PR00690 Adhesin family signature 59 72 3.9E-8 T 12-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 ALFP_0409 11f836bca5d76059edc93450e6bf3373 346 PRINTS PR00690 Adhesin family signature 72 89 3.9E-8 T 12-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 ALFP_0409 11f836bca5d76059edc93450e6bf3373 346 PRINTS PR00690 Adhesin family signature 28 46 3.9E-8 T 12-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 ALFP_0409 11f836bca5d76059edc93450e6bf3373 346 SUPERFAMILY SSF53807 21 345 1.13E-85 T 12-10-2018 ALFP_0409 11f836bca5d76059edc93450e6bf3373 346 Gene3D G3DSA:3.40.50.1980 29 145 3.8E-32 T 12-10-2018 ALFP_0409 11f836bca5d76059edc93450e6bf3373 346 Pfam PF01297 Zinc-uptake complex component A periplasmic 31 343 1.8E-80 T 12-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 ALFP_0409 11f836bca5d76059edc93450e6bf3373 346 PRINTS PR00691 Adhesin B signature 53 71 1.8E-11 T 12-10-2018 IPR006129 Adhesin B GO:0007155 ALFP_0409 11f836bca5d76059edc93450e6bf3373 346 PRINTS PR00691 Adhesin B signature 28 49 1.8E-11 T 12-10-2018 IPR006129 Adhesin B GO:0007155 ALFP_0409 11f836bca5d76059edc93450e6bf3373 346 PRINTS PR00691 Adhesin B signature 72 91 1.8E-11 T 12-10-2018 IPR006129 Adhesin B GO:0007155 ALFP_0409 11f836bca5d76059edc93450e6bf3373 346 Gene3D G3DSA:3.40.50.1980 146 224 1.5E-17 T 12-10-2018 ALFP_0409 11f836bca5d76059edc93450e6bf3373 346 Gene3D G3DSA:3.40.50.1980 225 345 3.5E-46 T 12-10-2018 ALFP_1972 f3587840700af62d1553402523eef762 285 ProSitePatterns PS01127 Elongation factor Ts signature 2. 70 80 - T 12-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 ALFP_1972 f3587840700af62d1553402523eef762 285 Gene3D G3DSA:1.10.8.10 1 49 1.2E-18 T 12-10-2018 ALFP_1972 f3587840700af62d1553402523eef762 285 Gene3D G3DSA:3.30.479.20 50 142 2.5E-27 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 ALFP_1972 f3587840700af62d1553402523eef762 285 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 2 282 1.0E-87 T 12-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 ALFP_1972 f3587840700af62d1553402523eef762 285 Gene3D G3DSA:1.10.286.20 184 230 2.1E-38 T 12-10-2018 ALFP_1972 f3587840700af62d1553402523eef762 285 SUPERFAMILY SSF54713 144 283 1.19E-46 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 ALFP_1972 f3587840700af62d1553402523eef762 285 SUPERFAMILY SSF46934 1 49 5.51E-13 T 12-10-2018 IPR009060 UBA-like superfamily GO:0005515 ALFP_1972 f3587840700af62d1553402523eef762 285 Hamap MF_00050 Elongation factor Ts [tsf]. 1 282 74.384 T 12-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 ALFP_1972 f3587840700af62d1553402523eef762 285 Pfam PF00889 Elongation factor TS 67 265 9.1E-68 T 12-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 ALFP_1972 f3587840700af62d1553402523eef762 285 Gene3D G3DSA:3.30.479.20 148 264 2.1E-38 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 ALFP_1972 f3587840700af62d1553402523eef762 285 SUPERFAMILY SSF54713 49 140 1.13E-23 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 ALFP_2630 cb96af228a54185124f1c5a5ed491f35 212 Pfam PF11180 Protein of unknown function (DUF2968) 30 202 1.5E-54 T 12-10-2018 IPR021350 Protein of unknown function DUF2968 ALFP_3112 a0b81d646c4f659ad963ebf93ea8c157 283 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 9 279 6.2E-75 T 12-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 ALFP_3112 a0b81d646c4f659ad963ebf93ea8c157 283 Gene3D G3DSA:3.40.50.10860 12 266 5.7E-73 T 12-10-2018 ALFP_3112 a0b81d646c4f659ad963ebf93ea8c157 283 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 12 94 2.3E-21 T 12-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 ALFP_3112 a0b81d646c4f659ad963ebf93ea8c157 283 SUPERFAMILY SSF51735 107 278 1.27E-38 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3112 a0b81d646c4f659ad963ebf93ea8c157 283 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 7 279 30.731 T 12-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 ALFP_3112 a0b81d646c4f659ad963ebf93ea8c157 283 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 122 201 1.5E-9 T 12-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase ALFP_3112 a0b81d646c4f659ad963ebf93ea8c157 283 Gene3D G3DSA:3.40.50.720 120 246 5.7E-73 T 12-10-2018 ALFP_3112 a0b81d646c4f659ad963ebf93ea8c157 283 SUPERFAMILY SSF53223 5 106 3.4E-26 T 12-10-2018 ALFP_0122 bd45a662200c3df5834ddca22ed1af05 152 Pfam PF03061 Thioesterase superfamily 54 131 9.2E-8 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 ALFP_0122 bd45a662200c3df5834ddca22ed1af05 152 SUPERFAMILY SSF54637 3 148 1.73E-30 T 12-10-2018 IPR029069 HotDog domain superfamily ALFP_0122 bd45a662200c3df5834ddca22ed1af05 152 Gene3D G3DSA:3.10.129.10 2 152 2.0E-45 T 12-10-2018 ALFP_0668 ec2af3af5fcde5ae699505495e7a4761 288 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 35 277 1.4E-67 T 12-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 ALFP_0668 ec2af3af5fcde5ae699505495e7a4761 288 Gene3D G3DSA:3.40.140.10 134 285 8.6E-53 T 12-10-2018 ALFP_0668 ec2af3af5fcde5ae699505495e7a4761 288 Pfam PF02634 FdhD/NarQ family 40 276 2.1E-76 T 12-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 ALFP_0668 ec2af3af5fcde5ae699505495e7a4761 288 SUPERFAMILY SSF53927 28 276 4.81E-79 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 ALFP_0668 ec2af3af5fcde5ae699505495e7a4761 288 Gene3D G3DSA:3.10.20.10 41 124 3.2E-10 T 12-10-2018 ALFP_0668 ec2af3af5fcde5ae699505495e7a4761 288 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 10 278 33.504 T 12-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 ALFP_0668 ec2af3af5fcde5ae699505495e7a4761 288 PIRSF PIRSF015626 6 280 4.2E-80 T 12-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 ALFP_0738 75a99bc55ecd307b02bbea0edcbd14e6 681 SMART SM00861 362 545 5.0E-67 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain ALFP_0738 75a99bc55ecd307b02bbea0edcbd14e6 681 SUPERFAMILY SSF52922 553 681 1.96E-44 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 ALFP_0738 75a99bc55ecd307b02bbea0edcbd14e6 681 Pfam PF02780 Transketolase, C-terminal domain 560 673 1.3E-13 T 12-10-2018 IPR033248 Transketolase, C-terminal domain ALFP_0738 75a99bc55ecd307b02bbea0edcbd14e6 681 SUPERFAMILY SSF52518 356 547 3.26E-62 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_0738 75a99bc55ecd307b02bbea0edcbd14e6 681 SUPERFAMILY SSF52518 9 335 6.37E-118 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_0738 75a99bc55ecd307b02bbea0edcbd14e6 681 Gene3D G3DSA:3.40.50.970 334 557 3.2E-83 T 12-10-2018 ALFP_0738 75a99bc55ecd307b02bbea0edcbd14e6 681 TIGRFAM TIGR00232 tktlase_bact: transketolase 10 680 1.6E-283 T 12-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 ALFP_0738 75a99bc55ecd307b02bbea0edcbd14e6 681 Pfam PF02779 Transketolase, pyrimidine binding domain 361 543 3.3E-44 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain ALFP_0738 75a99bc55ecd307b02bbea0edcbd14e6 681 Gene3D G3DSA:3.40.50.920 559 681 3.4E-43 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 ALFP_0738 75a99bc55ecd307b02bbea0edcbd14e6 681 ProSitePatterns PS00801 Transketolase signature 1. 16 36 - T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 ALFP_0738 75a99bc55ecd307b02bbea0edcbd14e6 681 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 8 341 1.1E-156 T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 ALFP_0738 75a99bc55ecd307b02bbea0edcbd14e6 681 Gene3D G3DSA:3.40.50.970 6 333 9.0E-129 T 12-10-2018 ALFP_1288 c587127e4de94ce2a490d68aabe68586 312 SUPERFAMILY SSF46785 11 96 1.56E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1288 c587127e4de94ce2a490d68aabe68586 312 Pfam PF03466 LysR substrate binding domain 96 303 3.5E-34 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1288 c587127e4de94ce2a490d68aabe68586 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 71 1.1E-14 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1288 c587127e4de94ce2a490d68aabe68586 312 Gene3D G3DSA:3.40.190.290 100 302 8.2E-52 T 12-10-2018 ALFP_1288 c587127e4de94ce2a490d68aabe68586 312 SUPERFAMILY SSF53850 97 303 8.69E-38 T 12-10-2018 ALFP_1288 c587127e4de94ce2a490d68aabe68586 312 Gene3D G3DSA:1.10.10.10 11 99 3.3E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0394 cf21de05a76cde95cee42399820ecabc 304 Pfam PF03466 LysR substrate binding domain 85 291 1.6E-41 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0394 cf21de05a76cde95cee42399820ecabc 304 Gene3D G3DSA:1.10.10.10 1 86 3.7E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0394 cf21de05a76cde95cee42399820ecabc 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 60 1.8E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0394 cf21de05a76cde95cee42399820ecabc 304 SUPERFAMILY SSF53850 86 295 7.6E-44 T 12-10-2018 ALFP_0394 cf21de05a76cde95cee42399820ecabc 304 SUPERFAMILY SSF46785 2 84 4.79E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0394 cf21de05a76cde95cee42399820ecabc 304 Gene3D G3DSA:3.40.190.290 88 291 1.0E-58 T 12-10-2018 ALFP_2307 dcafc2b50459c679507d762e4791df26 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 12-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 ALFP_2307 dcafc2b50459c679507d762e4791df26 249 SMART SM00893 23 211 3.7E-69 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 ALFP_2307 dcafc2b50459c679507d762e4791df26 249 PIRSF PIRSF000090 1 249 8.2E-88 T 12-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 ALFP_2307 dcafc2b50459c679507d762e4791df26 249 SUPERFAMILY SSF52402 1 242 3.77E-87 T 12-10-2018 ALFP_2307 dcafc2b50459c679507d762e4791df26 249 Gene3D G3DSA:3.40.50.620 1 247 2.5E-90 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_2307 dcafc2b50459c679507d762e4791df26 249 Pfam PF01012 Electron transfer flavoprotein domain 28 206 1.5E-47 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 ALFP_2731 b52702cde5e13859f95765e514d3f89f 501 SUPERFAMILY SSF46785 20 89 3.35E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2731 b52702cde5e13859f95765e514d3f89f 501 SMART SM00345 28 87 1.1E-11 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2731 b52702cde5e13859f95765e514d3f89f 501 Pfam PF00392 Bacterial regulatory proteins, gntR family 25 87 7.2E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2731 b52702cde5e13859f95765e514d3f89f 501 Pfam PF00155 Aminotransferase class I and II 169 417 6.8E-22 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_2731 b52702cde5e13859f95765e514d3f89f 501 Gene3D G3DSA:3.40.640.10 129 491 6.0E-121 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2731 b52702cde5e13859f95765e514d3f89f 501 SUPERFAMILY SSF53383 130 498 1.71E-88 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2731 b52702cde5e13859f95765e514d3f89f 501 Gene3D G3DSA:1.10.10.10 10 93 2.1E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 PIRSF PIRSF002111 369 561 6.4E-48 T 12-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 PIRSF PIRSF002111 2 395 4.8E-174 T 12-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 13 530 9.8E-205 T 12-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 SUPERFAMILY SSF50249 14 123 7.24E-18 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 Pfam PF00575 S1 RNA binding domain 200 270 4.9E-23 T 12-10-2018 IPR003029 S1 domain GO:0003676 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 Pfam PF00575 S1 RNA binding domain 372 444 8.7E-18 T 12-10-2018 IPR003029 S1 domain GO:0003676 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 Pfam PF00575 S1 RNA binding domain 113 181 6.2E-12 T 12-10-2018 IPR003029 S1 domain GO:0003676 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 Pfam PF00575 S1 RNA binding domain 287 357 6.7E-20 T 12-10-2018 IPR003029 S1 domain GO:0003676 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 Pfam PF00575 S1 RNA binding domain 28 95 6.2E-5 T 12-10-2018 IPR003029 S1 domain GO:0003676 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 Pfam PF00575 S1 RNA binding domain 460 530 1.3E-15 T 12-10-2018 IPR003029 S1 domain GO:0003676 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 SUPERFAMILY SSF50249 200 286 3.36E-26 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 SUPERFAMILY SSF50249 356 447 2.0E-21 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 SUPERFAMILY SSF50249 439 539 1.12E-21 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 Gene3D G3DSA:2.40.50.140 278 366 4.6E-27 T 12-10-2018 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 Gene3D G3DSA:2.40.50.140 108 191 8.8E-9 T 12-10-2018 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 Gene3D G3DSA:2.40.50.140 367 454 1.7E-24 T 12-10-2018 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 Gene3D G3DSA:2.40.50.140 16 107 1.3E-14 T 12-10-2018 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 PRINTS PR00681 Ribosomal protein S1 signature 136 153 1.1E-81 T 12-10-2018 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 PRINTS PR00681 Ribosomal protein S1 signature 31 49 1.1E-81 T 12-10-2018 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 PRINTS PR00681 Ribosomal protein S1 signature 118 134 1.1E-81 T 12-10-2018 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 PRINTS PR00681 Ribosomal protein S1 signature 340 358 1.1E-81 T 12-10-2018 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 PRINTS PR00681 Ribosomal protein S1 signature 300 319 1.1E-81 T 12-10-2018 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 PRINTS PR00681 Ribosomal protein S1 signature 165 185 1.1E-81 T 12-10-2018 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 PRINTS PR00681 Ribosomal protein S1 signature 49 63 1.1E-81 T 12-10-2018 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 PRINTS PR00681 Ribosomal protein S1 signature 94 113 1.1E-81 T 12-10-2018 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 PRINTS PR00681 Ribosomal protein S1 signature 222 243 1.1E-81 T 12-10-2018 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 Gene3D G3DSA:2.40.50.140 455 536 2.6E-20 T 12-10-2018 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 SMART SM00316 372 444 2.9E-19 T 12-10-2018 IPR022967 RNA-binding domain, S1 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 SMART SM00316 113 181 1.9E-9 T 12-10-2018 IPR022967 RNA-binding domain, S1 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 SMART SM00316 29 97 0.083 T 12-10-2018 IPR022967 RNA-binding domain, S1 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 SMART SM00316 459 530 4.4E-18 T 12-10-2018 IPR022967 RNA-binding domain, S1 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 SMART SM00316 285 357 1.4E-23 T 12-10-2018 IPR022967 RNA-binding domain, S1 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 SMART SM00316 200 270 2.5E-29 T 12-10-2018 IPR022967 RNA-binding domain, S1 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 SUPERFAMILY SSF50249 265 365 2.93E-25 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 Gene3D G3DSA:2.40.50.140 197 277 5.1E-28 T 12-10-2018 ALFP_2318 f7ca004f9a05f7a6f7f841aecf73105c 572 SUPERFAMILY SSF50249 113 195 2.43E-15 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_3492 2f7d7c767da4519dc24751c203bae09f 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 185 9.0E-6 T 12-10-2018 ALFP_3492 2f7d7c767da4519dc24751c203bae09f 246 SUPERFAMILY SSF51735 4 246 3.36E-92 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3492 2f7d7c767da4519dc24751c203bae09f 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 245 6.7E-75 T 12-10-2018 ALFP_3492 2f7d7c767da4519dc24751c203bae09f 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_3492 2f7d7c767da4519dc24751c203bae09f 246 Gene3D G3DSA:3.40.50.720 1 246 1.6E-92 T 12-10-2018 ALFP_3492 2f7d7c767da4519dc24751c203bae09f 246 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 244 1.9E-92 T 12-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 ALFP_3492 2f7d7c767da4519dc24751c203bae09f 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.0E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3492 2f7d7c767da4519dc24751c203bae09f 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.0E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3492 2f7d7c767da4519dc24751c203bae09f 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 2.0E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3492 2f7d7c767da4519dc24751c203bae09f 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.0E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3492 2f7d7c767da4519dc24751c203bae09f 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.0E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3492 2f7d7c767da4519dc24751c203bae09f 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.0E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3492 2f7d7c767da4519dc24751c203bae09f 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.7E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3492 2f7d7c767da4519dc24751c203bae09f 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.7E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3492 2f7d7c767da4519dc24751c203bae09f 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.7E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 SUPERFAMILY SSF81923 1 143 5.1E-54 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 Gene3D G3DSA:1.10.8.60 357 444 4.9E-34 T 12-10-2018 ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 Gene3D G3DSA:1.10.1780.10 1 144 8.0E-38 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 308 320 - T 12-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 SUPERFAMILY SSF52540 443 744 3.84E-80 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 Gene3D G3DSA:3.40.50.300 162 356 1.8E-65 T 12-10-2018 ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 SMART SM01086 659 749 1.2E-34 T 12-10-2018 IPR019489 Clp ATPase, C-terminal ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 Gene3D G3DSA:3.40.50.300 445 657 6.2E-78 T 12-10-2018 ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 2 740 0.0 T 12-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 SUPERFAMILY SSF52540 176 424 1.33E-67 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 8.9E-12 T 12-10-2018 IPR004176 Clp, N-terminal ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 Gene3D G3DSA:1.10.8.60 659 758 1.4E-27 T 12-10-2018 ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 615 5.3E-38 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 568 586 5.3E-38 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 539 557 5.3E-38 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 497 515 5.3E-38 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 SMART SM00382 212 358 1.4E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 SMART SM00382 493 660 5.3E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 524 542 - T 12-10-2018 IPR028299 ClpA/B, conserved site 2 ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 Pfam PF07724 AAA domain (Cdc48 subfamily) 492 653 5.4E-48 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 659 739 1.6E-22 T 12-10-2018 IPR019489 Clp ATPase, C-terminal ALFP_1417 f3f3a489ec1f6e811aa86bfc2d01f12f 773 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 217 330 1.4E-12 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 ALFP_0940 a869984f107533b90bd999524025a364 395 TIGRFAM TIGR00843 benE: benzoate transporter 1 371 1.9E-116 T 12-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 ALFP_0940 a869984f107533b90bd999524025a364 395 Pfam PF03594 Benzoate membrane transport protein 1 370 2.9E-133 T 12-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 ALFP_0068 5c16a1c5364b2c9a600aeef3ce20af4c 171 SMART SM00347 51 152 7.4E-25 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0068 5c16a1c5364b2c9a600aeef3ce20af4c 171 Pfam PF01047 MarR family 58 116 1.3E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0068 5c16a1c5364b2c9a600aeef3ce20af4c 171 SUPERFAMILY SSF46785 29 166 7.1E-30 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0068 5c16a1c5364b2c9a600aeef3ce20af4c 171 PRINTS PR00598 Bacterial regulatory protein MarR family signature 112 128 3.1E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0068 5c16a1c5364b2c9a600aeef3ce20af4c 171 PRINTS PR00598 Bacterial regulatory protein MarR family signature 76 92 3.1E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0068 5c16a1c5364b2c9a600aeef3ce20af4c 171 PRINTS PR00598 Bacterial regulatory protein MarR family signature 142 162 3.1E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0068 5c16a1c5364b2c9a600aeef3ce20af4c 171 PRINTS PR00598 Bacterial regulatory protein MarR family signature 93 108 3.1E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0068 5c16a1c5364b2c9a600aeef3ce20af4c 171 Gene3D G3DSA:1.10.10.10 25 170 4.1E-35 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3589 f4a1a36d9eb101d146ef04f4fd6decde 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 319 3.7E-90 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_3589 f4a1a36d9eb101d146ef04f4fd6decde 324 PIRSF PIRSF017082 1 324 7.6E-85 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_3589 f4a1a36d9eb101d146ef04f4fd6decde 324 Gene3D G3DSA:3.40.190.10 126 249 6.1E-116 T 12-10-2018 ALFP_3589 f4a1a36d9eb101d146ef04f4fd6decde 324 Gene3D G3DSA:3.40.190.150 29 314 6.1E-116 T 12-10-2018 ALFP_3589 f4a1a36d9eb101d146ef04f4fd6decde 324 SUPERFAMILY SSF53850 111 283 2.31E-14 T 12-10-2018 ALFP_0032 78ba8eccdc23d7735cfd49a4ab2b2e89 338 Gene3D G3DSA:3.40.50.720 1 182 1.5E-74 T 12-10-2018 ALFP_0032 78ba8eccdc23d7735cfd49a4ab2b2e89 338 SUPERFAMILY SSF51735 1 181 1.8E-70 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0032 78ba8eccdc23d7735cfd49a4ab2b2e89 338 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 15 326 4.5E-127 T 12-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 ALFP_0032 78ba8eccdc23d7735cfd49a4ab2b2e89 338 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 177 1.7E-69 T 12-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 ALFP_0032 78ba8eccdc23d7735cfd49a4ab2b2e89 338 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 183 326 9.4E-61 T 12-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 ALFP_0032 78ba8eccdc23d7735cfd49a4ab2b2e89 338 PIRSF PIRSF000116 2 205 1.5E-45 T 12-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 ALFP_0032 78ba8eccdc23d7735cfd49a4ab2b2e89 338 PIRSF PIRSF000116 201 332 7.7E-12 T 12-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 ALFP_0032 78ba8eccdc23d7735cfd49a4ab2b2e89 338 Gene3D G3DSA:1.10.3730.40 183 338 1.3E-68 T 12-10-2018 ALFP_0032 78ba8eccdc23d7735cfd49a4ab2b2e89 338 SUPERFAMILY SSF48179 183 330 7.14E-65 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_0032 78ba8eccdc23d7735cfd49a4ab2b2e89 338 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 1 328 44.057 T 12-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 ALFP_0969 332c198633f76ab4644466eff4bd7111 260 Gene3D G3DSA:3.30.540.10 1 143 1.6E-50 T 12-10-2018 ALFP_0969 332c198633f76ab4644466eff4bd7111 260 PRINTS PR01959 SuhB family inositol monophosphatase signature 199 211 1.6E-13 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 ALFP_0969 332c198633f76ab4644466eff4bd7111 260 PRINTS PR01959 SuhB family inositol monophosphatase signature 107 126 1.6E-13 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 ALFP_0969 332c198633f76ab4644466eff4bd7111 260 PRINTS PR01959 SuhB family inositol monophosphatase signature 14 36 1.6E-13 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 ALFP_0969 332c198633f76ab4644466eff4bd7111 260 SUPERFAMILY SSF56655 1 259 4.19E-80 T 12-10-2018 ALFP_0969 332c198633f76ab4644466eff4bd7111 260 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 212 226 - T 12-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 ALFP_0969 332c198633f76ab4644466eff4bd7111 260 Pfam PF00459 Inositol monophosphatase family 2 249 3.9E-61 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 ALFP_0969 332c198633f76ab4644466eff4bd7111 260 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 84 97 - T 12-10-2018 IPR020583 Inositol monophosphatase, metal-binding site ALFP_0969 332c198633f76ab4644466eff4bd7111 260 Gene3D G3DSA:3.40.190.80 144 260 3.0E-29 T 12-10-2018 ALFP_0969 332c198633f76ab4644466eff4bd7111 260 PRINTS PR00377 Inositol monophosphatase superfamily signature 178 199 1.2E-58 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 ALFP_0969 332c198633f76ab4644466eff4bd7111 260 PRINTS PR00377 Inositol monophosphatase superfamily signature 57 73 1.2E-58 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 ALFP_0969 332c198633f76ab4644466eff4bd7111 260 PRINTS PR00377 Inositol monophosphatase superfamily signature 84 100 1.2E-58 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 ALFP_0969 332c198633f76ab4644466eff4bd7111 260 PRINTS PR00377 Inositol monophosphatase superfamily signature 35 55 1.2E-58 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 ALFP_0969 332c198633f76ab4644466eff4bd7111 260 PRINTS PR00377 Inositol monophosphatase superfamily signature 133 156 1.2E-58 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 ALFP_0969 332c198633f76ab4644466eff4bd7111 260 PRINTS PR00377 Inositol monophosphatase superfamily signature 209 233 1.2E-58 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 ALFP_0202 49a515afa888942545fe8aac91b29ed8 294 Gene3D G3DSA:3.40.190.290 91 289 3.5E-17 T 12-10-2018 ALFP_0202 49a515afa888942545fe8aac91b29ed8 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 8.7E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0202 49a515afa888942545fe8aac91b29ed8 294 Pfam PF03466 LysR substrate binding domain 88 287 3.3E-25 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0202 49a515afa888942545fe8aac91b29ed8 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.3E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0202 49a515afa888942545fe8aac91b29ed8 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.3E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0202 49a515afa888942545fe8aac91b29ed8 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.3E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0202 49a515afa888942545fe8aac91b29ed8 294 Gene3D G3DSA:1.10.10.10 1 90 1.3E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0202 49a515afa888942545fe8aac91b29ed8 294 SUPERFAMILY SSF53850 90 286 2.48E-24 T 12-10-2018 ALFP_0202 49a515afa888942545fe8aac91b29ed8 294 SUPERFAMILY SSF46785 1 110 1.85E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1211 6865b6d37fbf2b6b4f473226104ef305 405 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 139 1.4E-9 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 ALFP_1211 6865b6d37fbf2b6b4f473226104ef305 405 SUPERFAMILY SSF64518 1 402 1.83E-53 T 12-10-2018 ALFP_1211 6865b6d37fbf2b6b4f473226104ef305 405 Gene3D G3DSA:1.20.1330.10 266 379 2.9E-10 T 12-10-2018 ALFP_1211 6865b6d37fbf2b6b4f473226104ef305 405 Gene3D G3DSA:1.20.1330.10 40 227 2.3E-37 T 12-10-2018 ALFP_1211 6865b6d37fbf2b6b4f473226104ef305 405 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 402 7.3E-74 T 12-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 ALFP_1180 4436ce414220438f696c45b508ba3ce1 165 Gene3D G3DSA:3.90.1720.10 16 157 6.0E-43 T 12-10-2018 ALFP_1180 4436ce414220438f696c45b508ba3ce1 165 SUPERFAMILY SSF54001 40 164 1.2E-39 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily ALFP_1180 4436ce414220438f696c45b508ba3ce1 165 Pfam PF00877 NlpC/P60 family 56 160 1.3E-28 T 12-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain ALFP_3557 28d9093f59b267c5c5b76f25c08d1fca 343 SUPERFAMILY SSF51679 29 331 4.45E-58 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 ALFP_3557 28d9093f59b267c5c5b76f25c08d1fca 343 Pfam PF00296 Luciferase-like monooxygenase 32 247 2.7E-36 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ALFP_3557 28d9093f59b267c5c5b76f25c08d1fca 343 Gene3D G3DSA:3.20.20.30 11 333 4.1E-97 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 ALFP_3557 28d9093f59b267c5c5b76f25c08d1fca 343 TIGRFAM TIGR03571 lucif_BA3436: luciferase-type oxidoreductase, BA3436 family 21 330 8.9E-117 T 12-10-2018 IPR020020 Luciferase-type oxidoreductase ALFP_3086 07be986a6bfc7cec390887de14bbd35e 463 SUPERFAMILY SSF51556 64 372 2.96E-78 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_3086 07be986a6bfc7cec390887de14bbd35e 463 Gene3D G3DSA:3.20.20.140 66 372 1.3E-119 T 12-10-2018 ALFP_3086 07be986a6bfc7cec390887de14bbd35e 463 SUPERFAMILY SSF51338 7 448 8.65E-29 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_3086 07be986a6bfc7cec390887de14bbd35e 463 Gene3D G3DSA:2.30.40.10 15 428 1.3E-119 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_3086 07be986a6bfc7cec390887de14bbd35e 463 Pfam PF01979 Amidohydrolase family 62 422 2.5E-49 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 ALFP_1942 99c8275d31d61a7fe7921d2497a2d5a6 256 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 123 133 - T 12-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 ALFP_1942 99c8275d31d61a7fe7921d2497a2d5a6 256 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 252 1.7E-86 T 12-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 ALFP_1942 99c8275d31d61a7fe7921d2497a2d5a6 256 SUPERFAMILY SSF51556 2 252 7.62E-90 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_1942 99c8275d31d61a7fe7921d2497a2d5a6 256 Gene3D G3DSA:3.20.20.140 1 256 2.6E-93 T 12-10-2018 ALFP_1942 99c8275d31d61a7fe7921d2497a2d5a6 256 PIRSF PIRSF005902 1 255 3.4E-82 T 12-10-2018 IPR001130 TatD family GO:0016788 ALFP_1942 99c8275d31d61a7fe7921d2497a2d5a6 256 Pfam PF01026 TatD related DNase 3 252 2.2E-78 T 12-10-2018 IPR001130 TatD family GO:0016788 ALFP_1942 99c8275d31d61a7fe7921d2497a2d5a6 256 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 12-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 ALFP_1942 99c8275d31d61a7fe7921d2497a2d5a6 256 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 188 204 - T 12-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 ALFP_1579 ac91c29f999c0e1c4202a76eb5a0fe77 292 SUPERFAMILY SSF56925 149 292 1.02E-8 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel ALFP_1579 ac91c29f999c0e1c4202a76eb5a0fe77 292 Gene3D G3DSA:2.40.160.90 145 292 1.4E-5 T 12-10-2018 ALFP_1962 dd722a1c5c914e36f29a5c904e3f2cba 134 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 1 129 4.2E-48 T 12-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 ALFP_1962 dd722a1c5c914e36f29a5c904e3f2cba 134 Pfam PF07977 FabA-like domain 1 124 2.0E-37 T 12-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 ALFP_1962 dd722a1c5c914e36f29a5c904e3f2cba 134 Gene3D G3DSA:3.10.129.10 1 132 1.4E-49 T 12-10-2018 ALFP_1962 dd722a1c5c914e36f29a5c904e3f2cba 134 SUPERFAMILY SSF54637 1 130 3.08E-42 T 12-10-2018 IPR029069 HotDog domain superfamily ALFP_1867 89fbf4c9aedff6db56a771ee229ff37d 372 Gene3D G3DSA:3.60.21.10 1 238 3.3E-34 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like ALFP_1867 89fbf4c9aedff6db56a771ee229ff37d 372 SUPERFAMILY SSF56300 2 285 1.39E-36 T 12-10-2018 ALFP_1867 89fbf4c9aedff6db56a771ee229ff37d 372 Pfam PF00149 Calcineurin-like phosphoesterase 2 197 2.3E-11 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 ALFP_1867 89fbf4c9aedff6db56a771ee229ff37d 372 PIRSF PIRSF033093 1 370 1.5E-92 T 12-10-2018 IPR014577 Uncharacterised conserved protein UCP033093, metallophosphoesterase-type ALFP_1979 5d346724aaf1174196f326b2e3dc7afe 494 Gene3D G3DSA:3.60.20.10 2 414 4.3E-146 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal ALFP_1979 5d346724aaf1174196f326b2e3dc7afe 494 SUPERFAMILY SSF56235 2 259 1.97E-69 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal ALFP_1979 5d346724aaf1174196f326b2e3dc7afe 494 PIRSF PIRSF000485 1 482 6.5E-154 T 12-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 ALFP_1979 5d346724aaf1174196f326b2e3dc7afe 494 Pfam PF00156 Phosphoribosyl transferase domain 290 394 6.0E-7 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 ALFP_1979 5d346724aaf1174196f326b2e3dc7afe 494 SUPERFAMILY SSF53271 252 482 2.69E-69 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like ALFP_1979 5d346724aaf1174196f326b2e3dc7afe 494 Pfam PF13522 Glutamine amidotransferase domain 65 210 3.9E-18 T 12-10-2018 ALFP_1979 5d346724aaf1174196f326b2e3dc7afe 494 Gene3D G3DSA:3.40.50.2020 279 443 4.3E-146 T 12-10-2018 ALFP_1979 5d346724aaf1174196f326b2e3dc7afe 494 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 466 44.889 T 12-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 ALFP_1979 5d346724aaf1174196f326b2e3dc7afe 494 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 466 1.9E-154 T 12-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 ALFP_2860 691f9aad7d1735b96a07755b9c234d5c 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 3.5E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2860 691f9aad7d1735b96a07755b9c234d5c 302 SUPERFAMILY SSF46785 1 85 1.24E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2860 691f9aad7d1735b96a07755b9c234d5c 302 Pfam PF03466 LysR substrate binding domain 88 291 2.0E-37 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_2860 691f9aad7d1735b96a07755b9c234d5c 302 SUPERFAMILY SSF53850 90 293 9.77E-34 T 12-10-2018 ALFP_2860 691f9aad7d1735b96a07755b9c234d5c 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.3E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2860 691f9aad7d1735b96a07755b9c234d5c 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.3E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2860 691f9aad7d1735b96a07755b9c234d5c 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.3E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2860 691f9aad7d1735b96a07755b9c234d5c 302 Gene3D G3DSA:3.40.190.290 90 293 7.7E-38 T 12-10-2018 ALFP_2860 691f9aad7d1735b96a07755b9c234d5c 302 Gene3D G3DSA:1.10.10.10 1 85 1.5E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3262 f22a705df1d3eb595019b92cf63c5f0a 678 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 161 3.2E-26 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_3262 f22a705df1d3eb595019b92cf63c5f0a 678 Gene3D G3DSA:2.40.170.20 172 678 3.3E-132 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_3262 f22a705df1d3eb595019b92cf63c5f0a 678 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 661 678 - T 12-10-2018 IPR010917 TonB-dependent receptor, conserved site ALFP_3262 f22a705df1d3eb595019b92cf63c5f0a 678 SUPERFAMILY SSF56935 27 678 2.02E-124 T 12-10-2018 ALFP_3262 f22a705df1d3eb595019b92cf63c5f0a 678 Gene3D G3DSA:2.170.130.10 38 166 5.2E-37 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_3262 f22a705df1d3eb595019b92cf63c5f0a 678 Pfam PF00593 TonB dependent receptor 221 677 1.4E-56 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_1973 d2cb0ef96aa1281f4d44a481f484a03a 246 Gene3D G3DSA:1.10.287.610 98 145 3.5E-87 T 12-10-2018 ALFP_1973 d2cb0ef96aa1281f4d44a481f484a03a 246 PRINTS PR00395 Ribosomal protein S2 signature 191 205 1.2E-35 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_1973 d2cb0ef96aa1281f4d44a481f484a03a 246 PRINTS PR00395 Ribosomal protein S2 signature 170 181 1.2E-35 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_1973 d2cb0ef96aa1281f4d44a481f484a03a 246 PRINTS PR00395 Ribosomal protein S2 signature 153 170 1.2E-35 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_1973 d2cb0ef96aa1281f4d44a481f484a03a 246 PRINTS PR00395 Ribosomal protein S2 signature 1 19 1.2E-35 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_1973 d2cb0ef96aa1281f4d44a481f484a03a 246 PRINTS PR00395 Ribosomal protein S2 signature 32 41 1.2E-35 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_1973 d2cb0ef96aa1281f4d44a481f484a03a 246 PRINTS PR00395 Ribosomal protein S2 signature 82 99 1.2E-35 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_1973 d2cb0ef96aa1281f4d44a481f484a03a 246 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 1 12 - T 12-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 ALFP_1973 d2cb0ef96aa1281f4d44a481f484a03a 246 Pfam PF00318 Ribosomal protein S2 4 219 1.0E-91 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_1973 d2cb0ef96aa1281f4d44a481f484a03a 246 Gene3D G3DSA:3.40.50.10490 3 214 3.5E-87 T 12-10-2018 ALFP_1973 d2cb0ef96aa1281f4d44a481f484a03a 246 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 1 220 38.942 T 12-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1973 d2cb0ef96aa1281f4d44a481f484a03a 246 SUPERFAMILY SSF52313 1 232 2.62E-91 T 12-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily ALFP_1973 d2cb0ef96aa1281f4d44a481f484a03a 246 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 1 221 5.5E-98 T 12-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2628 4a8a3d96befa04e495d97fb03428ef9e 206 SUPERFAMILY SSF55729 11 183 3.73E-31 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_2628 4a8a3d96befa04e495d97fb03428ef9e 206 Gene3D G3DSA:3.40.630.30 3 201 5.4E-39 T 12-10-2018 ALFP_2628 4a8a3d96befa04e495d97fb03428ef9e 206 Pfam PF13302 Acetyltransferase (GNAT) domain 20 158 1.7E-12 T 12-10-2018 IPR000182 GNAT domain ALFP_1898 e5da6d0e3b4fc665627461ba3b06229a 323 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 199 221 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site ALFP_1898 e5da6d0e3b4fc665627461ba3b06229a 323 Gene3D G3DSA:3.40.50.720 27 320 2.4E-111 T 12-10-2018 ALFP_1898 e5da6d0e3b4fc665627461ba3b06229a 323 SUPERFAMILY SSF52283 6 139 1.34E-31 T 12-10-2018 ALFP_1898 e5da6d0e3b4fc665627461ba3b06229a 323 SUPERFAMILY SSF51735 104 294 4.59E-50 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1898 e5da6d0e3b4fc665627461ba3b06229a 323 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 293 2.8E-52 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 ALFP_1898 e5da6d0e3b4fc665627461ba3b06229a 323 Gene3D G3DSA:3.40.50.720 100 292 2.4E-111 T 12-10-2018 ALFP_1898 e5da6d0e3b4fc665627461ba3b06229a 323 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 27 319 1.9E-27 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 ALFP_3489 25710e2746094687e1f7331f6b243fa6 494 Gene3D G3DSA:2.30.40.10 8 433 7.3E-187 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_3489 25710e2746094687e1f7331f6b243fa6 494 SUPERFAMILY SSF51338 8 464 2.54E-18 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_3489 25710e2746094687e1f7331f6b243fa6 494 Pfam PF07969 Amidohydrolase family 329 464 8.4E-20 T 12-10-2018 IPR013108 Amidohydrolase 3 ALFP_3489 25710e2746094687e1f7331f6b243fa6 494 Pfam PF07969 Amidohydrolase family 52 215 3.3E-13 T 12-10-2018 IPR013108 Amidohydrolase 3 ALFP_3489 25710e2746094687e1f7331f6b243fa6 494 Gene3D G3DSA:3.20.20.140 61 414 7.3E-187 T 12-10-2018 ALFP_3489 25710e2746094687e1f7331f6b243fa6 494 SUPERFAMILY SSF51556 62 419 2.55E-78 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_3489 25710e2746094687e1f7331f6b243fa6 494 Gene3D G3DSA:3.30.1490.130 288 344 7.3E-187 T 12-10-2018 IPR023100 D-aminoacylase, insert domain superfamily GO:0016811 ALFP_3610 766d495a7c16c325a01d80185c381354 324 SUPERFAMILY SSF46689 215 262 2.57E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_3610 766d495a7c16c325a01d80185c381354 324 Pfam PF14525 AraC-binding-like domain 20 195 2.1E-37 T 12-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like ALFP_3610 766d495a7c16c325a01d80185c381354 324 SMART SM00342 231 314 9.9E-29 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_3610 766d495a7c16c325a01d80185c381354 324 Gene3D G3DSA:1.10.10.60 215 317 2.0E-34 T 12-10-2018 ALFP_3610 766d495a7c16c325a01d80185c381354 324 SUPERFAMILY SSF46689 267 313 5.18E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_3610 766d495a7c16c325a01d80185c381354 324 Pfam PF12833 Helix-turn-helix domain 237 314 2.8E-26 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 PRINTS PR00315 GTP-binding elongation factor signature 71 81 6.9E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 PRINTS PR00315 GTP-binding elongation factor signature 123 132 6.9E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 PRINTS PR00315 GTP-binding elongation factor signature 87 98 6.9E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 PRINTS PR00315 GTP-binding elongation factor signature 7 20 6.9E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 PRINTS PR00315 GTP-binding elongation factor signature 51 59 6.9E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 SUPERFAMILY SSF52540 4 206 1.4E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 Gene3D G3DSA:3.30.70.870 307 591 5.1E-130 T 12-10-2018 ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 SUPERFAMILY SSF54980 303 388 2.88E-13 T 12-10-2018 IPR035647 EF-G domain III/V-like ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 Gene3D G3DSA:3.40.50.300 3 197 2.1E-63 T 12-10-2018 ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 Gene3D G3DSA:2.40.50.250 484 600 5.1E-130 T 12-10-2018 ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 Gene3D G3DSA:2.40.30.10 199 300 3.8E-29 T 12-10-2018 ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 SMART SM00838 396 484 0.0093 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 SUPERFAMILY SSF54980 399 514 6.23E-27 T 12-10-2018 IPR035647 EF-G domain III/V-like ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 Pfam PF03144 Elongation factor Tu domain 2 219 290 2.9E-7 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 600 1.9E-284 T 12-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 SUPERFAMILY SSF50447 151 300 3.06E-28 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 Pfam PF00009 Elongation factor Tu GTP binding domain 5 195 2.4E-53 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 Pfam PF00679 Elongation factor G C-terminus 397 478 9.4E-23 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 Gene3D G3DSA:3.30.70.240 390 483 5.1E-130 T 12-10-2018 ALFP_1079 ec662e3d716ade44af4fe519ec94e95d 605 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 134 1.4E-21 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 ALFP_3292 83491c2dc4fbcce5238cff376ce40417 140 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 4 83 2.6E-28 T 12-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3292 83491c2dc4fbcce5238cff376ce40417 140 Gene3D G3DSA:2.60.15.10 3 89 8.3E-31 T 12-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3292 83491c2dc4fbcce5238cff376ce40417 140 SUPERFAMILY SSF51344 3 85 3.27E-24 T 12-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3292 83491c2dc4fbcce5238cff376ce40417 140 Gene3D G3DSA:1.20.5.440 90 134 4.1E-5 T 12-10-2018 ALFP_3292 83491c2dc4fbcce5238cff376ce40417 140 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 128 4.1E-39 T 12-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3292 83491c2dc4fbcce5238cff376ce40417 140 SUPERFAMILY SSF46604 87 133 4.97E-8 T 12-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3292 83491c2dc4fbcce5238cff376ce40417 140 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 135 20.756 T 12-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3292 83491c2dc4fbcce5238cff376ce40417 140 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 9 85 5.0E-31 T 12-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3448 983f89b8e05832dc78d28cf0104161cf 141 SUPERFAMILY SSF101738 2 113 3.14E-43 T 12-10-2018 IPR036760 SspB-like superfamily ALFP_3448 983f89b8e05832dc78d28cf0104161cf 141 Gene3D G3DSA:2.30.30.220 1 126 6.7E-45 T 12-10-2018 IPR036760 SspB-like superfamily ALFP_3448 983f89b8e05832dc78d28cf0104161cf 141 Pfam PF04386 Stringent starvation protein B 5 130 1.1E-31 T 12-10-2018 IPR007481 Stringent starvation protein B ALFP_3448 983f89b8e05832dc78d28cf0104161cf 141 PIRSF PIRSF005276 1 141 2.3E-48 T 12-10-2018 IPR007481 Stringent starvation protein B ALFP_1509 bb6c9747a3115df951a3cb6be855d41c 301 SUPERFAMILY SSF103481 42 140 3.92E-10 T 12-10-2018 ALFP_1509 bb6c9747a3115df951a3cb6be855d41c 301 SUPERFAMILY SSF103481 190 288 1.27E-12 T 12-10-2018 ALFP_1509 bb6c9747a3115df951a3cb6be855d41c 301 Pfam PF00892 EamA-like transporter family 151 283 6.4E-20 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_1509 bb6c9747a3115df951a3cb6be855d41c 301 Pfam PF00892 EamA-like transporter family 8 135 1.2E-13 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_0770 3ff398062268c81243097d8b27cd7474 75 ProDom PD052686 LIPOPROTEIN INDUCIBLE OSMOTICALLY B PRECURSOR SIGNAL MEMBRANE PALMITATE TRANSMEMBRANE SURFACE 8 33 8.0E-4 T 12-10-2018 ALFP_0770 3ff398062268c81243097d8b27cd7474 75 Pfam PF05433 Glycine zipper 2TM domain 34 72 1.5E-6 T 12-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 ALFP_3411 c747d8b9711f01077466a94c5ef71fcf 353 Pfam PF00805 Pentapeptide repeats (8 copies) 263 297 4.0E-5 T 12-10-2018 IPR001646 Pentapeptide repeat ALFP_3411 c747d8b9711f01077466a94c5ef71fcf 353 Gene3D G3DSA:2.160.20.100 149 257 5.1E-18 T 12-10-2018 ALFP_3411 c747d8b9711f01077466a94c5ef71fcf 353 Gene3D G3DSA:2.160.20.100 258 333 8.0E-12 T 12-10-2018 ALFP_3411 c747d8b9711f01077466a94c5ef71fcf 353 Gene3D G3DSA:2.160.20.100 4 139 3.0E-20 T 12-10-2018 ALFP_3411 c747d8b9711f01077466a94c5ef71fcf 353 SUPERFAMILY SSF141571 12 171 1.08E-26 T 12-10-2018 ALFP_3411 c747d8b9711f01077466a94c5ef71fcf 353 Pfam PF13599 Pentapeptide repeats (9 copies) 178 252 2.1E-8 T 12-10-2018 IPR001646 Pentapeptide repeat ALFP_3411 c747d8b9711f01077466a94c5ef71fcf 353 Pfam PF13599 Pentapeptide repeats (9 copies) 39 108 8.9E-9 T 12-10-2018 IPR001646 Pentapeptide repeat ALFP_3411 c747d8b9711f01077466a94c5ef71fcf 353 SUPERFAMILY SSF141571 146 317 1.96E-34 T 12-10-2018 ALFP_3294 c18c6937fa904e9939e1463dbe2dbbb4 309 PRINTS PR00126 ATP synthase gamma subunit signature 287 308 1.0E-33 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3294 c18c6937fa904e9939e1463dbe2dbbb4 309 PRINTS PR00126 ATP synthase gamma subunit signature 256 275 1.0E-33 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3294 c18c6937fa904e9939e1463dbe2dbbb4 309 PRINTS PR00126 ATP synthase gamma subunit signature 174 191 1.0E-33 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3294 c18c6937fa904e9939e1463dbe2dbbb4 309 PRINTS PR00126 ATP synthase gamma subunit signature 81 100 1.0E-33 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3294 c18c6937fa904e9939e1463dbe2dbbb4 309 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 295 308 - T 12-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3294 c18c6937fa904e9939e1463dbe2dbbb4 309 Gene3D G3DSA:1.10.287.80 13 305 1.3E-97 T 12-10-2018 ALFP_3294 c18c6937fa904e9939e1463dbe2dbbb4 309 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 8 309 7.9E-98 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3294 c18c6937fa904e9939e1463dbe2dbbb4 309 SUPERFAMILY SSF52943 9 309 3.53E-88 T 12-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3294 c18c6937fa904e9939e1463dbe2dbbb4 309 Pfam PF00231 ATP synthase 11 308 5.4E-89 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3294 c18c6937fa904e9939e1463dbe2dbbb4 309 Gene3D G3DSA:3.40.1380.10 68 228 1.3E-97 T 12-10-2018 ALFP_3294 c18c6937fa904e9939e1463dbe2dbbb4 309 Hamap MF_00815 ATP synthase gamma chain [atpG]. 8 309 34.399 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_1657 0dc784c63a7ad127f145bc98b8561664 244 Pfam PF00005 ABC transporter 17 165 4.1E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1657 0dc784c63a7ad127f145bc98b8561664 244 SMART SM00382 26 213 3.3E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1657 0dc784c63a7ad127f145bc98b8561664 244 PIRSF PIRSF039085 1 243 9.2E-96 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 ALFP_1657 0dc784c63a7ad127f145bc98b8561664 244 SUPERFAMILY SSF52540 1 225 2.96E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1657 0dc784c63a7ad127f145bc98b8561664 244 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1657 0dc784c63a7ad127f145bc98b8561664 244 Gene3D G3DSA:3.40.50.300 1 234 6.1E-70 T 12-10-2018 ALFP_3257 3167f2edbcb0a1109d6e76716c38d293 350 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 9 339 34.188 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 ALFP_3257 3167f2edbcb0a1109d6e76716c38d293 350 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 191 215 3.8E-35 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 ALFP_3257 3167f2edbcb0a1109d6e76716c38d293 350 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 13 30 3.8E-35 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 ALFP_3257 3167f2edbcb0a1109d6e76716c38d293 350 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 256 273 3.8E-35 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 ALFP_3257 3167f2edbcb0a1109d6e76716c38d293 350 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 151 171 3.8E-35 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 ALFP_3257 3167f2edbcb0a1109d6e76716c38d293 350 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 216 240 3.8E-35 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 ALFP_3257 3167f2edbcb0a1109d6e76716c38d293 350 Gene3D G3DSA:3.40.50.720 2 205 1.3E-46 T 12-10-2018 ALFP_3257 3167f2edbcb0a1109d6e76716c38d293 350 SUPERFAMILY SSF48179 197 348 6.29E-51 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_3257 3167f2edbcb0a1109d6e76716c38d293 350 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 11 178 8.1E-36 T 12-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 ALFP_3257 3167f2edbcb0a1109d6e76716c38d293 350 Gene3D G3DSA:1.10.1040.10 207 350 1.8E-48 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ALFP_3257 3167f2edbcb0a1109d6e76716c38d293 350 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 206 227 - T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 ALFP_3257 3167f2edbcb0a1109d6e76716c38d293 350 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 198 337 5.7E-48 T 12-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 ALFP_3257 3167f2edbcb0a1109d6e76716c38d293 350 PIRSF PIRSF000114 4 349 2.7E-92 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 ALFP_3257 3167f2edbcb0a1109d6e76716c38d293 350 SUPERFAMILY SSF51735 7 198 2.78E-31 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3443 e0d5090148322c93ebaf381b5d858c2c 157 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 106 114 1.2E-10 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 ALFP_3443 e0d5090148322c93ebaf381b5d858c2c 157 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 115 124 1.2E-10 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 ALFP_3443 e0d5090148322c93ebaf381b5d858c2c 157 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 16 30 1.2E-10 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 ALFP_3443 e0d5090148322c93ebaf381b5d858c2c 157 SUPERFAMILY SSF81330 23 152 8.63E-32 T 12-10-2018 IPR036019 Gated mechanosensitive channel ALFP_3443 e0d5090148322c93ebaf381b5d858c2c 157 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 13 157 22.911 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 ALFP_3443 e0d5090148322c93ebaf381b5d858c2c 157 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 13 156 3.2E-32 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 ALFP_3443 e0d5090148322c93ebaf381b5d858c2c 157 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 23 36 - T 12-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site ALFP_3443 e0d5090148322c93ebaf381b5d858c2c 157 Gene3D G3DSA:1.10.1200.120 13 157 1.4E-38 T 12-10-2018 IPR036019 Gated mechanosensitive channel ALFP_3443 e0d5090148322c93ebaf381b5d858c2c 157 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 13 156 1.0E-40 T 12-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L ALFP_1656 5ba39ba0db17894b02b5766f761f0b49 232 SUPERFAMILY SSF161098 23 209 1.83E-38 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1656 5ba39ba0db17894b02b5766f761f0b49 232 Gene3D G3DSA:1.10.3720.10 21 226 6.2E-42 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1656 5ba39ba0db17894b02b5766f761f0b49 232 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 25 114 2.1E-15 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 ALFP_1656 5ba39ba0db17894b02b5766f761f0b49 232 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 43 224 6.3E-16 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_2136 acc473ad49aac97b0087c8b9810d5156 220 SUPERFAMILY SSF51182 101 214 1.56E-23 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_2136 acc473ad49aac97b0087c8b9810d5156 220 Gene3D G3DSA:1.10.260.40 19 95 5.2E-19 T 12-10-2018 ALFP_2136 acc473ad49aac97b0087c8b9810d5156 220 Pfam PF07883 Cupin domain 142 212 7.1E-11 T 12-10-2018 IPR013096 Cupin 2, conserved barrel ALFP_2136 acc473ad49aac97b0087c8b9810d5156 220 Pfam PF13560 Helix-turn-helix domain 29 81 9.5E-14 T 12-10-2018 ALFP_2136 acc473ad49aac97b0087c8b9810d5156 220 SUPERFAMILY SSF47413 26 93 5.63E-18 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_2136 acc473ad49aac97b0087c8b9810d5156 220 Gene3D G3DSA:2.60.120.10 103 214 3.2E-26 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_2136 acc473ad49aac97b0087c8b9810d5156 220 SMART SM00530 29 84 2.2E-15 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_1214 2e96f796768a2b29e5cc10b3f458c54a 568 Gene3D G3DSA:1.10.287.950 251 552 5.1E-88 T 12-10-2018 ALFP_1214 2e96f796768a2b29e5cc10b3f458c54a 568 Pfam PF00672 HAMP domain 250 298 7.0E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 ALFP_1214 2e96f796768a2b29e5cc10b3f458c54a 568 SUPERFAMILY SSF47170 54 216 1.7E-7 T 12-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily ALFP_1214 2e96f796768a2b29e5cc10b3f458c54a 568 SMART SM00304 250 302 1.4E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 ALFP_1214 2e96f796768a2b29e5cc10b3f458c54a 568 SUPERFAMILY SSF58104 270 555 2.49E-74 T 12-10-2018 ALFP_1214 2e96f796768a2b29e5cc10b3f458c54a 568 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 363 517 7.8E-52 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 ALFP_1214 2e96f796768a2b29e5cc10b3f458c54a 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 324 353 8.9E-64 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1214 2e96f796768a2b29e5cc10b3f458c54a 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 430 459 8.9E-64 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1214 2e96f796768a2b29e5cc10b3f458c54a 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 81 96 8.9E-64 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1214 2e96f796768a2b29e5cc10b3f458c54a 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 401 428 8.9E-64 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1214 2e96f796768a2b29e5cc10b3f458c54a 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 478 507 8.9E-64 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1214 2e96f796768a2b29e5cc10b3f458c54a 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 33 58 8.9E-64 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1214 2e96f796768a2b29e5cc10b3f458c54a 568 Gene3D G3DSA:1.20.120.30 50 186 3.2E-5 T 12-10-2018 ALFP_1214 2e96f796768a2b29e5cc10b3f458c54a 568 Pfam PF02203 Tar ligand binding domain homologue 33 182 1.5E-20 T 12-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 ALFP_1214 2e96f796768a2b29e5cc10b3f458c54a 568 SMART SM00283 303 550 1.8E-89 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 ALFP_0511 77e2c4b42ca2fce6b61ec00019681dbd 296 SUPERFAMILY SSF161098 58 282 1.83E-51 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0511 77e2c4b42ca2fce6b61ec00019681dbd 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 293 1.1E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0511 77e2c4b42ca2fce6b61ec00019681dbd 296 Gene3D G3DSA:1.10.3720.10 53 294 2.3E-62 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2924 f9dbecd9dffdf0054b1e668d6837b919 370 Gene3D G3DSA:3.30.70.270 206 369 5.2E-49 T 12-10-2018 ALFP_2924 f9dbecd9dffdf0054b1e668d6837b919 370 SMART SM00267 202 369 2.2E-50 T 12-10-2018 IPR000160 GGDEF domain ALFP_2924 f9dbecd9dffdf0054b1e668d6837b919 370 Pfam PF00990 Diguanylate cyclase, GGDEF domain 213 365 4.7E-40 T 12-10-2018 IPR000160 GGDEF domain ALFP_2924 f9dbecd9dffdf0054b1e668d6837b919 370 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 210 368 5.1E-43 T 12-10-2018 IPR000160 GGDEF domain ALFP_2924 f9dbecd9dffdf0054b1e668d6837b919 370 SUPERFAMILY SSF55073 218 367 1.41E-39 T 12-10-2018 IPR029787 Nucleotide cyclase ALFP_2837 739e59eecc681001d41e84f3dc8f0458 507 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 431 7.6E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2837 739e59eecc681001d41e84f3dc8f0458 507 PRINTS PR00344 Bacterial sensor protein C-terminal signature 482 495 7.6E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2837 739e59eecc681001d41e84f3dc8f0458 507 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 471 7.6E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2837 739e59eecc681001d41e84f3dc8f0458 507 SUPERFAMILY SSF47384 248 327 1.02E-13 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_2837 739e59eecc681001d41e84f3dc8f0458 507 Pfam PF08521 Two-component sensor kinase N-terminal 29 187 2.3E-31 T 12-10-2018 IPR013727 Two-component sensor kinase, N-terminal ALFP_2837 739e59eecc681001d41e84f3dc8f0458 507 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 385 496 2.5E-13 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2837 739e59eecc681001d41e84f3dc8f0458 507 SUPERFAMILY SSF55874 327 500 5.5E-27 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_2837 739e59eecc681001d41e84f3dc8f0458 507 SMART SM00387 380 498 4.5E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2837 739e59eecc681001d41e84f3dc8f0458 507 Gene3D G3DSA:3.30.565.10 334 501 2.1E-24 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_2837 739e59eecc681001d41e84f3dc8f0458 507 SMART SM00388 265 330 2.3E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_2837 739e59eecc681001d41e84f3dc8f0458 507 Pfam PF00512 His Kinase A (phospho-acceptor) domain 266 326 8.6E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_2837 739e59eecc681001d41e84f3dc8f0458 507 Gene3D G3DSA:1.10.287.130 216 331 3.6E-16 T 12-10-2018 ALFP_1413 68c04d9245c6f53df3c50f74bd39d3c6 401 Gene3D G3DSA:3.40.47.10 7 282 9.9E-152 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_1413 68c04d9245c6f53df3c50f74bd39d3c6 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 ALFP_1413 68c04d9245c6f53df3c50f74bd39d3c6 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 399 1.8E-131 T 12-10-2018 IPR002155 Thiolase GO:0016747 ALFP_1413 68c04d9245c6f53df3c50f74bd39d3c6 401 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 ALFP_1413 68c04d9245c6f53df3c50f74bd39d3c6 401 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 ALFP_1413 68c04d9245c6f53df3c50f74bd39d3c6 401 SUPERFAMILY SSF53901 277 400 2.46E-44 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_1413 68c04d9245c6f53df3c50f74bd39d3c6 401 SUPERFAMILY SSF53901 4 276 2.06E-77 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_1413 68c04d9245c6f53df3c50f74bd39d3c6 401 Pfam PF02803 Thiolase, C-terminal domain 277 400 5.7E-44 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 ALFP_1413 68c04d9245c6f53df3c50f74bd39d3c6 401 PIRSF PIRSF000429 1 401 8.3E-128 T 12-10-2018 IPR002155 Thiolase GO:0016747 ALFP_1413 68c04d9245c6f53df3c50f74bd39d3c6 401 Gene3D G3DSA:3.40.47.10 142 398 9.9E-152 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_1413 68c04d9245c6f53df3c50f74bd39d3c6 401 Pfam PF00108 Thiolase, N-terminal domain 6 268 1.6E-74 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 ALFP_1413 68c04d9245c6f53df3c50f74bd39d3c6 401 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 4 401 1.0E-216 T 12-10-2018 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 ALFP_2396 ce3a50fd6ca0212a57a105ddf0acb384 158 Pfam PF12802 MarR family 36 93 7.5E-12 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2396 ce3a50fd6ca0212a57a105ddf0acb384 158 SUPERFAMILY SSF46785 6 147 1.9E-29 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2396 ce3a50fd6ca0212a57a105ddf0acb384 158 Gene3D G3DSA:1.10.10.10 1 151 3.1E-36 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2396 ce3a50fd6ca0212a57a105ddf0acb384 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 86 2.1E-7 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2396 ce3a50fd6ca0212a57a105ddf0acb384 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 90 106 2.1E-7 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2396 ce3a50fd6ca0212a57a105ddf0acb384 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 120 140 2.1E-7 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2396 ce3a50fd6ca0212a57a105ddf0acb384 158 SMART SM00347 30 130 9.8E-15 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_3498 b6d7a1f6055764bfd8fd9decac591537 65 Gene3D G3DSA:1.10.1470.10 1 63 8.0E-31 T 12-10-2018 IPR036629 YjbJ superfamily ALFP_3498 b6d7a1f6055764bfd8fd9decac591537 65 PIRSF PIRSF039008 1 65 1.1E-31 T 12-10-2018 IPR026042 Stress response protein YjbJ ALFP_3498 b6d7a1f6055764bfd8fd9decac591537 65 SUPERFAMILY SSF69047 1 62 1.05E-24 T 12-10-2018 IPR036629 YjbJ superfamily ALFP_3498 b6d7a1f6055764bfd8fd9decac591537 65 Pfam PF05532 CsbD-like 4 56 5.0E-19 T 12-10-2018 IPR008462 CsbD-like domain ALFP_2236 c442254e358db483faccafea4f1ff62c 875 SUPERFAMILY SSF55186 550 709 1.12E-48 T 12-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 SUPERFAMILY SSF55681 2 251 3.48E-110 T 12-10-2018 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 852 0.0 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 651 693 1.0E-16 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 Pfam PF01411 tRNA synthetases class II (A) 5 554 1.2E-224 T 12-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 Gene3D G3DSA:3.30.54.20 622 674 3.0E-50 T 12-10-2018 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 873 200.052 T 12-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 Pfam PF02272 DHHA1 domain 731 869 8.3E-25 T 12-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 SMART SM00863 651 693 2.4E-20 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 Gene3D G3DSA:3.30.930.10 1 248 1.8E-119 T 12-10-2018 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 SUPERFAMILY SSF50447 451 550 5.72E-18 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily ALFP_2236 c442254e358db483faccafea4f1ff62c 875 Gene3D G3DSA:2.40.30.130 464 550 1.1E-9 T 12-10-2018 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 SUPERFAMILY SSF101353 252 442 7.32E-60 T 12-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 Gene3D G3DSA:3.30.980.10 560 694 3.0E-50 T 12-10-2018 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 205 216 1.4E-31 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 74 85 1.4E-31 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 278 294 1.4E-31 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 302 315 1.4E-31 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 232 245 1.4E-31 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 ALFP_2236 c442254e358db483faccafea4f1ff62c 875 Gene3D G3DSA:3.10.310.40 766 870 3.2E-30 T 12-10-2018 ALFP_1882 efb7bc8dd60219144759aad4d9672243 693 Pfam PF00270 DEAD/DEAH box helicase 268 435 7.9E-17 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ALFP_1882 efb7bc8dd60219144759aad4d9672243 693 Gene3D G3DSA:3.40.50.300 211 450 2.6E-80 T 12-10-2018 ALFP_1882 efb7bc8dd60219144759aad4d9672243 693 SMART SM00487 261 460 4.8E-28 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain ALFP_1882 efb7bc8dd60219144759aad4d9672243 693 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 30 663 7.0E-218 T 12-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 ALFP_1882 efb7bc8dd60219144759aad4d9672243 693 Gene3D G3DSA:3.40.50.300 458 630 6.0E-56 T 12-10-2018 ALFP_1882 efb7bc8dd60219144759aad4d9672243 693 Gene3D G3DSA:2.40.50.140 48 140 1.9E-6 T 12-10-2018 ALFP_1882 efb7bc8dd60219144759aad4d9672243 693 SUPERFAMILY SSF52540 286 647 1.33E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1882 efb7bc8dd60219144759aad4d9672243 693 Pfam PF00271 Helicase conserved C-terminal domain 479 588 6.8E-18 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_1882 efb7bc8dd60219144759aad4d9672243 693 SUPERFAMILY SSF52540 174 454 7.34E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1882 efb7bc8dd60219144759aad4d9672243 693 SMART SM00490 505 589 5.0E-21 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_1882 efb7bc8dd60219144759aad4d9672243 693 SUPERFAMILY SSF50249 23 170 4.45E-25 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_1882 efb7bc8dd60219144759aad4d9672243 693 Pfam PF17191 RecG wedge domain 23 168 6.7E-14 T 12-10-2018 IPR033454 RecG, wedge domain ALFP_2901 7ae1032a13bf8901379ea945b1da568d 168 SUPERFAMILY SSF52374 1 155 1.05E-43 T 12-10-2018 ALFP_2901 7ae1032a13bf8901379ea945b1da568d 168 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 85 101 1.0E-48 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 ALFP_2901 7ae1032a13bf8901379ea945b1da568d 168 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 112 134 1.0E-48 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 ALFP_2901 7ae1032a13bf8901379ea945b1da568d 168 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 1.0E-48 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 ALFP_2901 7ae1032a13bf8901379ea945b1da568d 168 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 1.0E-48 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 ALFP_2901 7ae1032a13bf8901379ea945b1da568d 168 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 49 73 1.0E-48 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 ALFP_2901 7ae1032a13bf8901379ea945b1da568d 168 Pfam PF01467 Cytidylyltransferase-like 5 133 1.7E-21 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 ALFP_2901 7ae1032a13bf8901379ea945b1da568d 168 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 58 4.3E-16 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 ALFP_2901 7ae1032a13bf8901379ea945b1da568d 168 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 158 34.837 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 ALFP_2901 7ae1032a13bf8901379ea945b1da568d 168 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 3 156 1.0E-56 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 ALFP_2901 7ae1032a13bf8901379ea945b1da568d 168 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 11 68 0.009 T 12-10-2018 ALFP_2901 7ae1032a13bf8901379ea945b1da568d 168 Gene3D G3DSA:3.40.50.620 1 166 3.0E-55 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_3420 3e883daa606824c9af3da7aabd57f8b5 274 Pfam PF00005 ABC transporter 25 174 5.6E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3420 3e883daa606824c9af3da7aabd57f8b5 274 SUPERFAMILY SSF52540 9 240 1.52E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3420 3e883daa606824c9af3da7aabd57f8b5 274 Gene3D G3DSA:3.40.50.300 8 255 8.8E-65 T 12-10-2018 ALFP_3420 3e883daa606824c9af3da7aabd57f8b5 274 SMART SM00382 34 223 8.8E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3420 3e883daa606824c9af3da7aabd57f8b5 274 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1779 0facf2a5704875f2dc9d4121f065fe22 378 PIRSF PIRSF029215 1 377 7.1E-67 T 12-10-2018 IPR016913 Uncharacterised conserved protein UCP029215 ALFP_1779 0facf2a5704875f2dc9d4121f065fe22 378 Pfam PF09979 Uncharacterized protein conserved in bacteria (DUF2213) 14 179 1.1E-51 T 12-10-2018 IPR016913 Uncharacterised conserved protein UCP029215 ALFP_0259 58f426c9b8dce8dfdee2623c07765261 264 SMART SM00986 81 249 1.0E-29 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 ALFP_0259 58f426c9b8dce8dfdee2623c07765261 264 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 39 253 9.1E-70 T 12-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 ALFP_0259 58f426c9b8dce8dfdee2623c07765261 264 SUPERFAMILY SSF52141 37 259 9.81E-71 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 ALFP_0259 58f426c9b8dce8dfdee2623c07765261 264 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 38 260 35.112 T 12-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 ALFP_0259 58f426c9b8dce8dfdee2623c07765261 264 SMART SM00987 81 249 1.0E-29 T 12-10-2018 ALFP_0259 58f426c9b8dce8dfdee2623c07765261 264 Gene3D G3DSA:3.40.470.10 28 263 2.1E-80 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 ALFP_0259 58f426c9b8dce8dfdee2623c07765261 264 Pfam PF03167 Uracil DNA glycosylase superfamily 86 249 3.8E-18 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 ALFP_3728 57d35ea56891655e6d8e864a626d3525 480 Pfam PF00199 Catalase 7 386 8.3E-191 T 12-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_3728 57d35ea56891655e6d8e864a626d3525 480 Pfam PF06628 Catalase-related immune-responsive 415 474 2.2E-24 T 12-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_3728 57d35ea56891655e6d8e864a626d3525 480 ProSitePatterns PS00438 Catalase proximal active site signature. 43 59 - T 12-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_3728 57d35ea56891655e6d8e864a626d3525 480 Gene3D G3DSA:2.40.180.10 1 479 2.1E-225 T 12-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 ALFP_3728 57d35ea56891655e6d8e864a626d3525 480 SUPERFAMILY SSF56634 3 474 8.77E-212 T 12-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_3728 57d35ea56891655e6d8e864a626d3525 480 SMART SM01060 7 390 7.1E-286 T 12-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_3728 57d35ea56891655e6d8e864a626d3525 480 PRINTS PR00067 Catalase signature 20 43 6.3E-75 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_3728 57d35ea56891655e6d8e864a626d3525 480 PRINTS PR00067 Catalase signature 122 140 6.3E-75 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_3728 57d35ea56891655e6d8e864a626d3525 480 PRINTS PR00067 Catalase signature 319 345 6.3E-75 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_3728 57d35ea56891655e6d8e864a626d3525 480 PRINTS PR00067 Catalase signature 82 100 6.3E-75 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_3728 57d35ea56891655e6d8e864a626d3525 480 PRINTS PR00067 Catalase signature 103 120 6.3E-75 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_3728 57d35ea56891655e6d8e864a626d3525 480 PRINTS PR00067 Catalase signature 287 314 6.3E-75 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_3728 57d35ea56891655e6d8e864a626d3525 480 PIRSF PIRSF038928 1 479 1.3E-224 T 12-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_3728 57d35ea56891655e6d8e864a626d3525 480 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 332 340 - T 12-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_1146 ee3f9e18a4e16722f17a00f1cc76faca 597 Gene3D G3DSA:3.40.50.300 342 594 9.3E-91 T 12-10-2018 ALFP_1146 ee3f9e18a4e16722f17a00f1cc76faca 597 Pfam PF00005 ABC transporter 372 522 2.3E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1146 ee3f9e18a4e16722f17a00f1cc76faca 597 SUPERFAMILY SSF52540 348 593 1.33E-88 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1146 ee3f9e18a4e16722f17a00f1cc76faca 597 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 25 594 1.1E-241 T 12-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 ALFP_1146 ee3f9e18a4e16722f17a00f1cc76faca 597 Pfam PF00664 ABC transporter transmembrane region 41 309 1.8E-47 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 ALFP_1146 ee3f9e18a4e16722f17a00f1cc76faca 597 SUPERFAMILY SSF90123 21 340 2.75E-73 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_1146 ee3f9e18a4e16722f17a00f1cc76faca 597 ProSitePatterns PS00211 ABC transporters family signature. 494 508 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1146 ee3f9e18a4e16722f17a00f1cc76faca 597 SMART SM00382 381 574 1.1E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1146 ee3f9e18a4e16722f17a00f1cc76faca 597 Gene3D G3DSA:1.20.1560.10 8 341 1.6E-75 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_2609 9247da28589854a32f48714adc875415 448 SUPERFAMILY SSF46589 1 112 3.24E-29 T 12-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 ALFP_2609 9247da28589854a32f48714adc875415 448 Gene3D G3DSA:3.30.930.10 105 448 3.7E-117 T 12-10-2018 ALFP_2609 9247da28589854a32f48714adc875415 448 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 244 421 1.1E-32 T 12-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_2609 9247da28589854a32f48714adc875415 448 PRINTS PR00981 Seryl-tRNA synthetase signature 337 350 7.0E-32 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 ALFP_2609 9247da28589854a32f48714adc875415 448 PRINTS PR00981 Seryl-tRNA synthetase signature 285 297 7.0E-32 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 ALFP_2609 9247da28589854a32f48714adc875415 448 PRINTS PR00981 Seryl-tRNA synthetase signature 354 370 7.0E-32 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 ALFP_2609 9247da28589854a32f48714adc875415 448 PRINTS PR00981 Seryl-tRNA synthetase signature 372 388 7.0E-32 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 ALFP_2609 9247da28589854a32f48714adc875415 448 PRINTS PR00981 Seryl-tRNA synthetase signature 297 310 7.0E-32 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 ALFP_2609 9247da28589854a32f48714adc875415 448 SUPERFAMILY SSF55681 134 439 4.07E-96 T 12-10-2018 ALFP_2609 9247da28589854a32f48714adc875415 448 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 1.4E-26 T 12-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 ALFP_2609 9247da28589854a32f48714adc875415 448 PIRSF PIRSF001529 1 447 8.8E-170 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 ALFP_2609 9247da28589854a32f48714adc875415 448 Gene3D G3DSA:1.10.287.40 1 104 5.2E-20 T 12-10-2018 ALFP_2609 9247da28589854a32f48714adc875415 448 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 443 40.035 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 ALFP_2609 9247da28589854a32f48714adc875415 448 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 438 1.5E-159 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 ALFP_1984 4416ddaef352e899d2593bdc0ad1e393 565 SUPERFAMILY SSF47005 260 301 3.79E-12 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 ALFP_1984 4416ddaef352e899d2593bdc0ad1e393 565 SUPERFAMILY SSF51230 124 215 1.02E-21 T 12-10-2018 IPR011053 Single hybrid motif ALFP_1984 4416ddaef352e899d2593bdc0ad1e393 565 SUPERFAMILY SSF51230 3 96 4.06E-21 T 12-10-2018 IPR011053 Single hybrid motif ALFP_1984 4416ddaef352e899d2593bdc0ad1e393 565 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 339 564 2.8E-79 T 12-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 ALFP_1984 4416ddaef352e899d2593bdc0ad1e393 565 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 ALFP_1984 4416ddaef352e899d2593bdc0ad1e393 565 SUPERFAMILY SSF52777 327 562 2.85E-82 T 12-10-2018 ALFP_1984 4416ddaef352e899d2593bdc0ad1e393 565 Gene3D G3DSA:2.40.50.100 124 202 1.7E-18 T 12-10-2018 ALFP_1984 4416ddaef352e899d2593bdc0ad1e393 565 Gene3D G3DSA:2.40.50.100 5 84 5.0E-19 T 12-10-2018 ALFP_1984 4416ddaef352e899d2593bdc0ad1e393 565 Gene3D G3DSA:4.10.320.10 263 305 2.0E-18 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 ALFP_1984 4416ddaef352e899d2593bdc0ad1e393 565 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 147 176 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 ALFP_1984 4416ddaef352e899d2593bdc0ad1e393 565 Pfam PF02817 e3 binding domain 262 297 6.9E-16 T 12-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 ALFP_1984 4416ddaef352e899d2593bdc0ad1e393 565 Pfam PF00364 Biotin-requiring enzyme 6 77 7.2E-20 T 12-10-2018 IPR000089 Biotin/lipoyl attachment ALFP_1984 4416ddaef352e899d2593bdc0ad1e393 565 Pfam PF00364 Biotin-requiring enzyme 125 196 4.8E-19 T 12-10-2018 IPR000089 Biotin/lipoyl attachment ALFP_1984 4416ddaef352e899d2593bdc0ad1e393 565 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 111 565 2.0E-185 T 12-10-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 ALFP_1984 4416ddaef352e899d2593bdc0ad1e393 565 Gene3D G3DSA:3.30.559.10 323 565 1.8E-91 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 ALFP_1557 323f0499cf2a7aa09eb765f857b07c5c 394 SUPERFAMILY SSF63380 151 253 1.47E-28 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_1557 323f0499cf2a7aa09eb765f857b07c5c 394 Gene3D G3DSA:3.40.50.80 254 392 4.1E-27 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_1557 323f0499cf2a7aa09eb765f857b07c5c 394 PRINTS PR00410 Phenol hydroxylase reductase family signature 263 282 2.5E-10 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1557 323f0499cf2a7aa09eb765f857b07c5c 394 PRINTS PR00410 Phenol hydroxylase reductase family signature 186 198 2.5E-10 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1557 323f0499cf2a7aa09eb765f857b07c5c 394 PRINTS PR00410 Phenol hydroxylase reductase family signature 248 257 2.5E-10 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1557 323f0499cf2a7aa09eb765f857b07c5c 394 PRINTS PR00410 Phenol hydroxylase reductase family signature 355 363 2.5E-10 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1557 323f0499cf2a7aa09eb765f857b07c5c 394 Pfam PF00042 Globin 6 103 3.0E-9 T 12-10-2018 IPR000971 Globin GO:0020037 ALFP_1557 323f0499cf2a7aa09eb765f857b07c5c 394 Pfam PF00175 Oxidoreductase NAD-binding domain 264 369 9.7E-10 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ALFP_1557 323f0499cf2a7aa09eb765f857b07c5c 394 SUPERFAMILY SSF46458 1 139 4.82E-37 T 12-10-2018 IPR009050 Globin-like superfamily ALFP_1557 323f0499cf2a7aa09eb765f857b07c5c 394 Pfam PF00970 Oxidoreductase FAD-binding domain 159 253 4.6E-11 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 ALFP_1557 323f0499cf2a7aa09eb765f857b07c5c 394 SUPERFAMILY SSF52343 256 390 2.36E-31 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_1557 323f0499cf2a7aa09eb765f857b07c5c 394 Gene3D G3DSA:1.10.490.10 1 145 1.4E-50 T 12-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 ALFP_1557 323f0499cf2a7aa09eb765f857b07c5c 394 Gene3D G3DSA:2.40.30.10 152 253 2.6E-33 T 12-10-2018 ALFP_1571 89f5b40c28915ab6efff2b67c5d91b5b 204 Pfam PF02798 Glutathione S-transferase, N-terminal domain 1 74 3.6E-14 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 ALFP_1571 89f5b40c28915ab6efff2b67c5d91b5b 204 Gene3D G3DSA:3.40.30.10 1 76 1.7E-22 T 12-10-2018 ALFP_1571 89f5b40c28915ab6efff2b67c5d91b5b 204 Gene3D G3DSA:1.20.1050.10 83 193 5.3E-26 T 12-10-2018 ALFP_1571 89f5b40c28915ab6efff2b67c5d91b5b 204 Pfam PF13410 Glutathione S-transferase, C-terminal domain 124 184 1.5E-7 T 12-10-2018 ALFP_1571 89f5b40c28915ab6efff2b67c5d91b5b 204 SUPERFAMILY SSF52833 1 102 9.49E-23 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_1571 89f5b40c28915ab6efff2b67c5d91b5b 204 SUPERFAMILY SSF47616 71 197 1.2E-26 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily ALFP_2471 c566a054a5b5d58fd6c7c4f504edb2e1 412 SUPERFAMILY SSF53335 115 384 4.89E-69 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_2471 c566a054a5b5d58fd6c7c4f504edb2e1 412 PIRSF PIRSF003085 2 409 3.0E-130 T 12-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 ALFP_2471 c566a054a5b5d58fd6c7c4f504edb2e1 412 Gene3D G3DSA:3.40.50.150 112 389 3.0E-92 T 12-10-2018 ALFP_2471 c566a054a5b5d58fd6c7c4f504edb2e1 412 Pfam PF02353 Mycolic acid cyclopropane synthetase 103 381 1.9E-95 T 12-10-2018 ALFP_1846 1bcd573758acc7df8a54b88c37d5179a 211 SUPERFAMILY SSF63380 1 92 3.49E-19 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_1846 1bcd573758acc7df8a54b88c37d5179a 211 PIRSF PIRSF000498 1 206 1.4E-56 T 12-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 ALFP_1846 1bcd573758acc7df8a54b88c37d5179a 211 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 199 8.4E-58 T 12-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 ALFP_1846 1bcd573758acc7df8a54b88c37d5179a 211 Gene3D G3DSA:2.40.30.20 1 89 7.9E-24 T 12-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 ALFP_1846 1bcd573758acc7df8a54b88c37d5179a 211 Pfam PF00677 Lumazine binding domain 3 86 1.0E-16 T 12-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 ALFP_1846 1bcd573758acc7df8a54b88c37d5179a 211 Pfam PF00677 Lumazine binding domain 101 184 8.3E-20 T 12-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 ALFP_1846 1bcd573758acc7df8a54b88c37d5179a 211 SUPERFAMILY SSF63380 93 198 7.06E-27 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_1846 1bcd573758acc7df8a54b88c37d5179a 211 Gene3D G3DSA:2.40.30.20 98 186 4.1E-25 T 12-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 ALFP_0014 b907840f4dd0ffabe596b892b2eebfc4 304 Gene3D G3DSA:3.30.1330.40 173 304 1.4E-31 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_0014 b907840f4dd0ffabe596b892b2eebfc4 304 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 14 137 6.2E-17 T 12-10-2018 ALFP_0014 b907840f4dd0ffabe596b892b2eebfc4 304 Gene3D G3DSA:3.10.180.10 6 163 1.4E-32 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_0014 b907840f4dd0ffabe596b892b2eebfc4 304 SUPERFAMILY SSF54593 7 165 2.01E-30 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_0014 b907840f4dd0ffabe596b892b2eebfc4 304 Pfam PF01042 Endoribonuclease L-PSP 188 302 4.7E-20 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 ALFP_0014 b907840f4dd0ffabe596b892b2eebfc4 304 SUPERFAMILY SSF55298 186 304 3.3E-27 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_0110 c759979344ed04e44351e30063a4cd39 122 Pfam PF03358 NADPH-dependent FMN reductase 6 106 1.6E-15 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 ALFP_0110 c759979344ed04e44351e30063a4cd39 122 SUPERFAMILY SSF52218 1 105 4.19E-15 T 12-10-2018 IPR029039 Flavoprotein-like superfamily ALFP_0110 c759979344ed04e44351e30063a4cd39 122 Gene3D G3DSA:3.40.50.360 1 119 5.9E-17 T 12-10-2018 IPR029039 Flavoprotein-like superfamily ALFP_3673 703803fc8cd2f75d11254f3181350cea 158 Pfam PF00164 Ribosomal protein S12/S23 48 158 9.0E-43 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3673 703803fc8cd2f75d11254f3181350cea 158 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 36 158 39.108 T 12-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3673 703803fc8cd2f75d11254f3181350cea 158 Gene3D G3DSA:2.40.50.140 33 158 7.2E-63 T 12-10-2018 ALFP_3673 703803fc8cd2f75d11254f3181350cea 158 ProSitePatterns PS00055 Ribosomal protein S12 signature. 78 85 - T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3673 703803fc8cd2f75d11254f3181350cea 158 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 36 158 3.3E-69 T 12-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3673 703803fc8cd2f75d11254f3181350cea 158 PRINTS PR01034 Ribosomal protein S12 signature 77 92 8.6E-61 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3673 703803fc8cd2f75d11254f3181350cea 158 PRINTS PR01034 Ribosomal protein S12 signature 145 157 8.6E-61 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3673 703803fc8cd2f75d11254f3181350cea 158 PRINTS PR01034 Ribosomal protein S12 signature 93 112 8.6E-61 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3673 703803fc8cd2f75d11254f3181350cea 158 PRINTS PR01034 Ribosomal protein S12 signature 129 145 8.6E-61 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3673 703803fc8cd2f75d11254f3181350cea 158 PRINTS PR01034 Ribosomal protein S12 signature 112 129 8.6E-61 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3673 703803fc8cd2f75d11254f3181350cea 158 PRINTS PR01034 Ribosomal protein S12 signature 62 77 8.6E-61 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3673 703803fc8cd2f75d11254f3181350cea 158 PIRSF PIRSF002133 36 158 3.3E-54 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3673 703803fc8cd2f75d11254f3181350cea 158 SUPERFAMILY SSF50249 37 158 5.65E-52 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_1426 7f969329e55c50b8c7d1b81e859f172a 278 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 240 262 1.5E-12 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal ALFP_1426 7f969329e55c50b8c7d1b81e859f172a 278 SUPERFAMILY SSF52540 14 262 1.52E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1426 7f969329e55c50b8c7d1b81e859f172a 278 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1426 7f969329e55c50b8c7d1b81e859f172a 278 Gene3D G3DSA:3.40.50.300 11 264 8.3E-65 T 12-10-2018 ALFP_1426 7f969329e55c50b8c7d1b81e859f172a 278 Pfam PF00005 ABC transporter 31 191 4.1E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1426 7f969329e55c50b8c7d1b81e859f172a 278 SMART SM00382 40 239 1.1E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3204 af6d6534de7012fcb1b55f990ff1e9a6 222 Pfam PF01048 Phosphorylase superfamily 3 219 1.9E-52 T 12-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 ALFP_3204 af6d6534de7012fcb1b55f990ff1e9a6 222 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 1 219 1.9E-46 T 12-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 ALFP_3204 af6d6534de7012fcb1b55f990ff1e9a6 222 SUPERFAMILY SSF53167 1 219 6.15E-63 T 12-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 ALFP_3204 af6d6534de7012fcb1b55f990ff1e9a6 222 Gene3D G3DSA:3.40.50.1580 1 218 1.1E-66 T 12-10-2018 ALFP_1327 7aaa252312a8aa5a68dee7d4bb1b1cc9 220 Gene3D G3DSA:1.20.1440.100 30 102 3.2E-35 T 12-10-2018 ALFP_1327 7aaa252312a8aa5a68dee7d4bb1b1cc9 220 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 18 200 2.5E-26 T 12-10-2018 ALFP_1327 7aaa252312a8aa5a68dee7d4bb1b1cc9 220 SUPERFAMILY SSF56784 18 209 5.89E-25 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_1327 7aaa252312a8aa5a68dee7d4bb1b1cc9 220 Pfam PF12710 haloacid dehalogenase-like hydrolase 19 199 1.8E-35 T 12-10-2018 ALFP_1327 7aaa252312a8aa5a68dee7d4bb1b1cc9 220 Gene3D G3DSA:3.40.50.1000 20 215 3.2E-35 T 12-10-2018 IPR023214 HAD superfamily ALFP_1327 7aaa252312a8aa5a68dee7d4bb1b1cc9 220 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 18 211 4.3E-38 T 12-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like ALFP_0447 813f93b5f1d0101471f1dbd5590286d2 461 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 63 267 1.0E-37 T 12-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 ALFP_0447 813f93b5f1d0101471f1dbd5590286d2 461 TIGRFAM TIGR02783 TrbL_P: P-type conjugative transfer protein TrbL 27 334 2.5E-80 T 12-10-2018 IPR014150 Conjugal transfer, TrbL ALFP_2124 3268f0fae41a271b740a1a5f9f3f6426 382 Gene3D G3DSA:3.20.20.70 4 375 1.0E-54 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_2124 3268f0fae41a271b740a1a5f9f3f6426 382 Pfam PF03060 Nitronate monooxygenase 9 302 1.5E-32 T 12-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 ALFP_2124 3268f0fae41a271b740a1a5f9f3f6426 382 SUPERFAMILY SSF51412 9 297 3.36E-37 T 12-10-2018 ALFP_1587 e92f1a75bc0b41fcdfedd4ac19fd05f7 594 SUPERFAMILY SSF89796 281 576 5.36E-61 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_1587 e92f1a75bc0b41fcdfedd4ac19fd05f7 594 SUPERFAMILY SSF89796 57 266 3.53E-21 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_1587 e92f1a75bc0b41fcdfedd4ac19fd05f7 594 Gene3D G3DSA:3.40.50.10540 280 530 3.0E-57 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_1587 e92f1a75bc0b41fcdfedd4ac19fd05f7 594 Gene3D G3DSA:3.40.50.10540 56 258 2.7E-11 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_1587 e92f1a75bc0b41fcdfedd4ac19fd05f7 594 Pfam PF02515 CoA-transferase family III 66 267 1.5E-9 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 ALFP_1587 e92f1a75bc0b41fcdfedd4ac19fd05f7 594 Pfam PF02515 CoA-transferase family III 283 523 3.9E-50 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 ALFP_1587 e92f1a75bc0b41fcdfedd4ac19fd05f7 594 Gene3D G3DSA:3.30.1540.10 152 243 2.7E-11 T 12-10-2018 ALFP_1393 6e7478c4892ddf5588e4be493cd580da 567 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 3 559 2.0E-196 T 12-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 ALFP_1393 6e7478c4892ddf5588e4be493cd580da 567 PIRSF PIRSF001294 1 563 3.8E-226 T 12-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 ALFP_1393 6e7478c4892ddf5588e4be493cd580da 567 Pfam PF03814 Potassium-transporting ATPase A subunit 10 559 7.6E-225 T 12-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 ALFP_1393 6e7478c4892ddf5588e4be493cd580da 567 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 1 561 32.897 T 12-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 ALFP_2696 a68f4e123f64ece92a025dee3fddd740 317 SUPERFAMILY SSF46785 2 82 5.66E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2696 a68f4e123f64ece92a025dee3fddd740 317 Gene3D G3DSA:3.40.190.10 93 278 1.1E-43 T 12-10-2018 ALFP_2696 a68f4e123f64ece92a025dee3fddd740 317 Gene3D G3DSA:1.10.10.10 1 92 3.0E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2696 a68f4e123f64ece92a025dee3fddd740 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2696 a68f4e123f64ece92a025dee3fddd740 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2696 a68f4e123f64ece92a025dee3fddd740 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2696 a68f4e123f64ece92a025dee3fddd740 317 SUPERFAMILY SSF53850 89 295 1.63E-35 T 12-10-2018 ALFP_2696 a68f4e123f64ece92a025dee3fddd740 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.9E-24 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2696 a68f4e123f64ece92a025dee3fddd740 317 Gene3D G3DSA:3.40.190.10 163 267 1.1E-43 T 12-10-2018 ALFP_2696 a68f4e123f64ece92a025dee3fddd740 317 Pfam PF03466 LysR substrate binding domain 88 293 1.1E-37 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_3516 bcd64a312c142d8cd57d031a4fb5fe6a 275 Pfam PF00293 NUDIX domain 137 248 5.7E-10 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 ALFP_3516 bcd64a312c142d8cd57d031a4fb5fe6a 275 Pfam PF15916 Domain of unknown function (DUF4743) 32 124 8.1E-6 T 12-10-2018 IPR031804 Domain of unknown function DUF4743 ALFP_3516 bcd64a312c142d8cd57d031a4fb5fe6a 275 SUPERFAMILY SSF55811 109 264 1.9E-23 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 ALFP_3516 bcd64a312c142d8cd57d031a4fb5fe6a 275 Gene3D G3DSA:3.90.79.10 125 270 7.4E-46 T 12-10-2018 ALFP_3516 bcd64a312c142d8cd57d031a4fb5fe6a 275 Gene3D G3DSA:3.30.750.160 34 210 7.4E-46 T 12-10-2018 ALFP_3631 530446e5abc4c6f18e47c07368a8d0cc 210 Gene3D G3DSA:3.10.620.30 18 209 4.8E-67 T 12-10-2018 ALFP_3631 530446e5abc4c6f18e47c07368a8d0cc 210 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 56 164 1.7E-13 T 12-10-2018 IPR010319 Transglutaminase-like cysteine peptidase, predicted ALFP_3560 193f34738e72e1895f2fd714ef3baac0 398 SUPERFAMILY SSF52343 127 264 2.1E-36 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_3560 193f34738e72e1895f2fd714ef3baac0 398 Gene3D G3DSA:2.40.30.10 16 125 1.3E-28 T 12-10-2018 ALFP_3560 193f34738e72e1895f2fd714ef3baac0 398 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 229 237 2.3E-5 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_3560 193f34738e72e1895f2fd714ef3baac0 398 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 99 108 2.3E-5 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_3560 193f34738e72e1895f2fd714ef3baac0 398 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 48 58 2.3E-5 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_3560 193f34738e72e1895f2fd714ef3baac0 398 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 135 154 2.3E-5 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_3560 193f34738e72e1895f2fd714ef3baac0 398 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 67 74 2.3E-5 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_3560 193f34738e72e1895f2fd714ef3baac0 398 Gene3D G3DSA:3.40.50.80 127 267 5.8E-34 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_3560 193f34738e72e1895f2fd714ef3baac0 398 Gene3D G3DSA:3.10.20.30 305 397 3.2E-17 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_3560 193f34738e72e1895f2fd714ef3baac0 398 SUPERFAMILY SSF54292 305 397 4.98E-21 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_3560 193f34738e72e1895f2fd714ef3baac0 398 Pfam PF00970 Oxidoreductase FAD-binding domain 47 124 4.3E-11 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 ALFP_3560 193f34738e72e1895f2fd714ef3baac0 398 SUPERFAMILY SSF63380 14 128 7.83E-25 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_3560 193f34738e72e1895f2fd714ef3baac0 398 PRINTS PR00406 Cytochrome B5 reductase signature 112 126 6.5E-5 T 12-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 ALFP_3560 193f34738e72e1895f2fd714ef3baac0 398 PRINTS PR00406 Cytochrome B5 reductase signature 229 237 6.5E-5 T 12-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 ALFP_3560 193f34738e72e1895f2fd714ef3baac0 398 PRINTS PR00406 Cytochrome B5 reductase signature 135 154 6.5E-5 T 12-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 ALFP_3560 193f34738e72e1895f2fd714ef3baac0 398 Pfam PF00175 Oxidoreductase NAD-binding domain 136 240 1.7E-15 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ALFP_3560 193f34738e72e1895f2fd714ef3baac0 398 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 325 389 3.1E-8 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 Gene3D G3DSA:3.30.470.90 67 341 9.0E-95 T 12-10-2018 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 Gene3D G3DSA:1.10.287.610 2 66 2.6E-29 T 12-10-2018 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 Hamap MF_01588 DNA ligase [ligA]. 4 692 53.5 T 12-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 431 458 4.3E-11 T 12-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 SUPERFAMILY SSF47781 428 606 3.63E-61 T 12-10-2018 IPR010994 RuvA domain 2-like ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 4 342 1.2E-119 T 12-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 Pfam PF14520 Helix-hairpin-helix domain 470 525 2.7E-8 T 12-10-2018 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 346 422 5.2E-36 T 12-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 SUPERFAMILY SSF52113 619 692 5.98E-17 T 12-10-2018 IPR036420 BRCT domain superfamily ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 355 370 - T 12-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 SUPERFAMILY SSF50249 342 425 5.48E-29 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 Gene3D G3DSA:2.20.70.80 415 455 7.5E-16 T 12-10-2018 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 Gene3D G3DSA:3.40.50.10190 607 693 6.0E-27 T 12-10-2018 IPR036420 BRCT domain superfamily ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 SUPERFAMILY SSF56091 4 340 5.44E-115 T 12-10-2018 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 Pfam PF12826 Helix-hairpin-helix motif 534 596 2.4E-26 T 12-10-2018 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 SMART SM00278 536 555 260.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 SMART SM00278 470 489 15.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 SMART SM00278 504 523 6.6 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 SMART SM00278 568 587 190.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 Gene3D G3DSA:1.10.150.20 456 529 8.4E-29 T 12-10-2018 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 Gene3D G3DSA:2.40.50.140 342 414 1.8E-33 T 12-10-2018 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 Gene3D G3DSA:1.10.150.20 530 606 2.3E-29 T 12-10-2018 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 618 692 1.2E-10 T 12-10-2018 IPR001357 BRCT domain ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 9 688 3.3E-251 T 12-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 PIRSF PIRSF001604 1 695 2.3E-243 T 12-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 SMART SM00292 618 695 1.4E-11 T 12-10-2018 IPR001357 BRCT domain ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 SMART SM00532 1 472 1.1E-257 T 12-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 ALFP_2563 7bd8f4f279b0a1418901d01fb745a200 695 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 119 148 - T 12-10-2018 IPR018239 NAD-dependent DNA ligase, active site ALFP_1827 2970298320e28b93ca2b6942ab747ab1 139 Pfam PF03061 Thioesterase superfamily 55 125 3.0E-10 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 ALFP_1827 2970298320e28b93ca2b6942ab747ab1 139 SUPERFAMILY SSF54637 13 137 4.64E-23 T 12-10-2018 IPR029069 HotDog domain superfamily ALFP_1827 2970298320e28b93ca2b6942ab747ab1 139 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 22 131 2.4E-12 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 ALFP_1827 2970298320e28b93ca2b6942ab747ab1 139 Gene3D G3DSA:3.10.129.10 9 139 1.2E-32 T 12-10-2018 ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 SUPERFAMILY SSF53300 4360 4556 2.23E-16 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Pfam PF13519 von Willebrand factor type A domain 4364 4495 8.1E-10 T 12-10-2018 IPR002035 von Willebrand factor, type A ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4843 4861 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 SMART SM00327 4360 4571 3.7E-7 T 12-10-2018 IPR002035 von Willebrand factor, type A ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 SUPERFAMILY SSF51120 4748 4953 8.5E-21 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4852 4870 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 4888 4968 2.2E-10 T 12-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 PRINTS PR00313 NodO calcium binding signature 4865 4874 2.0E-8 T 12-10-2018 ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 PRINTS PR00313 NodO calcium binding signature 4751 4762 2.0E-8 T 12-10-2018 ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 PRINTS PR00313 NodO calcium binding signature 4838 4846 2.0E-8 T 12-10-2018 ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 PRINTS PR00313 NodO calcium binding signature 4856 4864 2.0E-8 T 12-10-2018 ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.150.10.10 4830 4962 1.5E-19 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 891 991 5.3E-29 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 2659 2759 3.0E-27 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 2347 2447 3.0E-27 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 2035 2135 3.0E-27 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 1619 1719 4.2E-28 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 3595 3695 7.6E-29 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 1203 1303 2.3E-27 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 3699 3799 5.3E-29 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 1827 1927 2.3E-27 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 475 575 2.2E-28 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 3075 3175 2.0E-28 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 1307 1407 3.0E-27 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 267 367 3.0E-28 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 1411 1511 4.7E-29 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 3907 4007 4.0E-29 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 3179 3279 7.8E-28 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 579 679 2.8E-25 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 2243 2343 9.0E-29 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 4011 4111 4.2E-28 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 3491 3591 3.0E-27 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 2555 2655 9.0E-29 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 1515 1615 6.1E-28 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 2139 2239 7.6E-29 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 2867 2967 2.0E-28 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 1099 1199 1.9E-28 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 683 783 5.3E-29 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 4115 4215 2.7E-27 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 2451 2551 4.0E-29 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 1931 2031 1.9E-28 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 1723 1823 5.3E-29 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 2971 3071 2.0E-28 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 3803 3903 4.1E-27 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 787 887 5.3E-29 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 995 1095 9.0E-27 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 371 471 2.2E-28 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 3387 3487 3.0E-27 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 2763 2863 3.0E-27 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 3283 3383 9.0E-29 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3632 9783a9567d31c89a6781ce72d911a843 4976 Gene3D G3DSA:2.60.40.10 4219 4321 1.6E-24 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_1303 8c0151c5cd3c7fc84b9a424c9cd7cb11 447 SMART SM00387 332 441 5.1E-24 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_1303 8c0151c5cd3c7fc84b9a424c9cd7cb11 447 Pfam PF00512 His Kinase A (phospho-acceptor) domain 221 287 6.9E-12 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_1303 8c0151c5cd3c7fc84b9a424c9cd7cb11 447 SUPERFAMILY SSF55874 280 440 8.25E-29 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_1303 8c0151c5cd3c7fc84b9a424c9cd7cb11 447 Gene3D G3DSA:3.30.565.10 297 442 3.6E-27 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_1303 8c0151c5cd3c7fc84b9a424c9cd7cb11 447 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 440 2.6E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_1303 8c0151c5cd3c7fc84b9a424c9cd7cb11 447 SMART SM00388 219 288 1.7E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_1303 8c0151c5cd3c7fc84b9a424c9cd7cb11 447 Gene3D G3DSA:1.10.287.130 170 289 1.1E-16 T 12-10-2018 ALFP_1303 8c0151c5cd3c7fc84b9a424c9cd7cb11 447 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 419 4.7E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1303 8c0151c5cd3c7fc84b9a424c9cd7cb11 447 PRINTS PR00344 Bacterial sensor protein C-terminal signature 370 384 4.7E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1303 8c0151c5cd3c7fc84b9a424c9cd7cb11 447 Pfam PF08521 Two-component sensor kinase N-terminal 9 142 1.5E-7 T 12-10-2018 IPR013727 Two-component sensor kinase, N-terminal ALFP_1303 8c0151c5cd3c7fc84b9a424c9cd7cb11 447 SUPERFAMILY SSF47384 202 287 2.35E-12 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_0027 959b4514bf0ef0019c4d0fc8b6216dde 224 SUPERFAMILY SSF46785 12 81 8.24E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0027 959b4514bf0ef0019c4d0fc8b6216dde 224 Gene3D G3DSA:1.10.10.10 14 78 1.7E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0027 959b4514bf0ef0019c4d0fc8b6216dde 224 SUPERFAMILY SSF48008 83 214 3.66E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_0027 959b4514bf0ef0019c4d0fc8b6216dde 224 SMART SM00345 19 77 2.4E-12 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0027 959b4514bf0ef0019c4d0fc8b6216dde 224 SMART SM00895 87 207 2.0E-17 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_0027 959b4514bf0ef0019c4d0fc8b6216dde 224 Gene3D G3DSA:1.20.120.530 81 220 2.4E-25 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_0027 959b4514bf0ef0019c4d0fc8b6216dde 224 Pfam PF07729 FCD domain 88 206 3.2E-21 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_0027 959b4514bf0ef0019c4d0fc8b6216dde 224 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 77 2.3E-14 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_3466 471cdb0811ba66c1c425052a9a1f241b 148 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 4 134 1.8E-20 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_2851 533f2487ab32a62ac1b77d311525b823 468 PIRSF PIRSF006603 18 464 3.1E-50 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 ALFP_2851 533f2487ab32a62ac1b77d311525b823 468 Pfam PF01554 MatE 27 188 7.1E-23 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 ALFP_2851 533f2487ab32a62ac1b77d311525b823 468 Pfam PF01554 MatE 255 419 3.0E-24 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 ALFP_2851 533f2487ab32a62ac1b77d311525b823 468 TIGRFAM TIGR00797 matE: MATE efflux family protein 27 434 1.3E-67 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 ALFP_3732 f1fd0e0ae801d2f757640716713eadb5 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 42 8.0E-16 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3732 f1fd0e0ae801d2f757640716713eadb5 44 Pfam PF00468 Ribosomal protein L34 1 44 5.9E-23 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3732 f1fd0e0ae801d2f757640716713eadb5 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 12-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3732 f1fd0e0ae801d2f757640716713eadb5 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.873 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3732 f1fd0e0ae801d2f757640716713eadb5 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 2.2E-24 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_0215 f74931cc3bca2687a9ef52e429492942 227 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 224 3.9E-23 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0215 f74931cc3bca2687a9ef52e429492942 227 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 118 1.5E-22 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 ALFP_0215 f74931cc3bca2687a9ef52e429492942 227 Gene3D G3DSA:1.10.3720.10 2 225 3.4E-50 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0215 f74931cc3bca2687a9ef52e429492942 227 SUPERFAMILY SSF161098 13 209 1.01E-42 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0144 b3b3869390635d66ee4b43fcc846f383 213 SUPERFAMILY SSF52833 48 190 1.65E-33 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_0144 b3b3869390635d66ee4b43fcc846f383 213 Gene3D G3DSA:3.40.30.10 30 213 3.3E-46 T 12-10-2018 ALFP_0144 b3b3869390635d66ee4b43fcc846f383 213 Pfam PF01323 DSBA-like thioredoxin domain 54 187 1.6E-13 T 12-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 ALFP_0144 b3b3869390635d66ee4b43fcc846f383 213 PIRSF PIRSF001488 11 213 8.9E-51 T 12-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL ALFP_1955 8a551bb387e16119727da8c068c263d1 788 SUPERFAMILY SSF51621 463 787 1.88E-90 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 ALFP_1955 8a551bb387e16119727da8c068c263d1 788 SUPERFAMILY SSF52009 345 465 8.89E-35 T 12-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 ALFP_1955 8a551bb387e16119727da8c068c263d1 788 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 692 710 - T 12-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 ALFP_1955 8a551bb387e16119727da8c068c263d1 788 Gene3D G3DSA:3.50.30.10 355 465 1.7E-40 T 12-10-2018 ALFP_1955 8a551bb387e16119727da8c068c263d1 788 PIRSF PIRSF000854 1 788 0.0 T 12-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 ALFP_1955 8a551bb387e16119727da8c068c263d1 788 SUPERFAMILY SSF56059 1 382 5.06E-106 T 12-10-2018 ALFP_1955 8a551bb387e16119727da8c068c263d1 788 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 16 347 7.3E-117 T 12-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 ALFP_1955 8a551bb387e16119727da8c068c263d1 788 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 412 423 - T 12-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 ALFP_1955 8a551bb387e16119727da8c068c263d1 788 Pfam PF00391 PEP-utilising enzyme, mobile domain 383 453 8.5E-26 T 12-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 ALFP_1955 8a551bb387e16119727da8c068c263d1 788 Gene3D G3DSA:3.30.470.20 191 354 1.4E-55 T 12-10-2018 ALFP_1955 8a551bb387e16119727da8c068c263d1 788 Gene3D G3DSA:3.30.1490.20 1 190 3.0E-70 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 ALFP_1955 8a551bb387e16119727da8c068c263d1 788 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 4 787 0.0 T 12-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 ALFP_1955 8a551bb387e16119727da8c068c263d1 788 Gene3D G3DSA:3.20.20.60 476 788 9.7E-96 T 12-10-2018 ALFP_1955 8a551bb387e16119727da8c068c263d1 788 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 480 787 1.8E-56 T 12-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 ALFP_1174 0da02add1d9c92a50ffe5a937a29eff6 566 Gene3D G3DSA:3.30.750.24 427 550 4.7E-25 T 12-10-2018 IPR036513 STAS domain superfamily ALFP_1174 0da02add1d9c92a50ffe5a937a29eff6 566 Pfam PF00916 Sulfate permease family 20 384 1.3E-90 T 12-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 ALFP_1174 0da02add1d9c92a50ffe5a937a29eff6 566 Pfam PF01740 STAS domain 439 539 2.5E-14 T 12-10-2018 IPR002645 STAS domain ALFP_1174 0da02add1d9c92a50ffe5a937a29eff6 566 SUPERFAMILY SSF52091 434 543 1.16E-16 T 12-10-2018 IPR036513 STAS domain superfamily ALFP_3343 f1eaa98696158db121ffad528767b7a6 811 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 721 748 - T 12-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 ALFP_3343 f1eaa98696158db121ffad528767b7a6 811 Gene3D G3DSA:3.40.228.10 1 269 4.4E-72 T 12-10-2018 ALFP_3343 f1eaa98696158db121ffad528767b7a6 811 Gene3D G3DSA:2.40.40.20 631 809 3.5E-69 T 12-10-2018 ALFP_3343 f1eaa98696158db121ffad528767b7a6 811 SUPERFAMILY SSF50692 620 809 3.32E-43 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily ALFP_3343 f1eaa98696158db121ffad528767b7a6 811 TIGRFAM TIGR01553 formate-DH-alph: formate dehydrogenase-N alpha subunit 1 808 0.0 T 12-10-2018 IPR006443 Formate dehydrogenase-N, alpha subunit GO:0008863|GO:0009055|GO:0043546|GO:0045333|GO:0047111 ALFP_3343 f1eaa98696158db121ffad528767b7a6 811 Pfam PF01568 Molydopterin dinucleotide binding domain 687 802 3.3E-14 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 ALFP_3343 f1eaa98696158db121ffad528767b7a6 811 Gene3D G3DSA:3.40.228.10 487 630 2.6E-24 T 12-10-2018 ALFP_3343 f1eaa98696158db121ffad528767b7a6 811 Pfam PF00384 Molybdopterin oxidoreductase 2 300 1.1E-19 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_3343 f1eaa98696158db121ffad528767b7a6 811 SUPERFAMILY SSF53706 1 641 8.25E-228 T 12-10-2018 ALFP_3343 f1eaa98696158db121ffad528767b7a6 811 Gene3D G3DSA:3.40.50.740 308 472 2.0E-56 T 12-10-2018 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 SUPERFAMILY SSF63380 77 203 3.83E-23 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 299 307 7.7E-9 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 210 229 7.7E-9 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 136 146 7.7E-9 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 235 244 7.7E-9 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 153 160 7.7E-9 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 SUPERFAMILY SSF52343 191 329 7.46E-34 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 Pfam PF00970 Oxidoreductase FAD-binding domain 122 201 1.3E-15 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 Pfam PF00175 Oxidoreductase NAD-binding domain 211 313 2.8E-22 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 11 87 6.9E-14 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 41 49 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 SUPERFAMILY SSF54292 9 96 8.26E-24 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 PRINTS PR00410 Phenol hydroxylase reductase family signature 153 160 1.9E-27 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 PRINTS PR00410 Phenol hydroxylase reductase family signature 195 204 1.9E-27 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 PRINTS PR00410 Phenol hydroxylase reductase family signature 235 244 1.9E-27 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 PRINTS PR00410 Phenol hydroxylase reductase family signature 210 229 1.9E-27 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 PRINTS PR00410 Phenol hydroxylase reductase family signature 136 148 1.9E-27 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 PRINTS PR00410 Phenol hydroxylase reductase family signature 299 307 1.9E-27 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 Gene3D G3DSA:3.40.50.80 199 331 1.0E-33 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 Gene3D G3DSA:2.40.30.10 102 198 7.7E-24 T 12-10-2018 ALFP_1672 bee4bdaee5c94b326027fccea48d7633 335 Gene3D G3DSA:3.10.20.30 1 96 2.2E-23 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_2227 ba8555bc32d6507288a7025ebaafa7b5 428 SUPERFAMILY SSF56014 314 426 3.4E-9 T 12-10-2018 ALFP_2227 ba8555bc32d6507288a7025ebaafa7b5 428 Gene3D G3DSA:3.20.20.20 19 308 7.6E-92 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_2227 ba8555bc32d6507288a7025ebaafa7b5 428 Gene3D G3DSA:3.30.413.10 309 426 6.0E-38 T 12-10-2018 ALFP_2227 ba8555bc32d6507288a7025ebaafa7b5 428 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 23 417 27.623 T 12-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 ALFP_2227 ba8555bc32d6507288a7025ebaafa7b5 428 Pfam PF04551 GcpE protein 35 415 8.2E-112 T 12-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 ALFP_2227 ba8555bc32d6507288a7025ebaafa7b5 428 PIRSF PIRSF004640 16 425 2.4E-126 T 12-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 ALFP_2227 ba8555bc32d6507288a7025ebaafa7b5 428 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 23 415 5.3E-116 T 12-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 ALFP_1716 49ee48dd645ba80f9a1d84e71432e06c 164 TIGRFAM TIGR02944 suf_reg_Xantho: FeS assembly SUF system regulator 1 131 3.3E-42 T 12-10-2018 IPR014290 SUF system FeS cluster assembly regulator ALFP_1716 49ee48dd645ba80f9a1d84e71432e06c 164 SUPERFAMILY SSF46785 3 133 8.98E-29 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1716 49ee48dd645ba80f9a1d84e71432e06c 164 Gene3D G3DSA:1.10.10.10 1 138 1.4E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1716 49ee48dd645ba80f9a1d84e71432e06c 164 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 4 132 7.0E-25 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type ALFP_1716 49ee48dd645ba80f9a1d84e71432e06c 164 Pfam PF02082 Transcriptional regulator 3 83 9.7E-18 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type ALFP_0501 2774b8461eac26b0b1675759f62c1598 456 Pfam PF00324 Amino acid permease 23 431 3.4E-89 T 12-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 ALFP_0501 2774b8461eac26b0b1675759f62c1598 456 Gene3D G3DSA:1.20.1740.10 14 456 8.0E-55 T 12-10-2018 ALFP_0501 2774b8461eac26b0b1675759f62c1598 456 PIRSF PIRSF006060 4 455 1.6E-62 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 ALFP_0501 2774b8461eac26b0b1675759f62c1598 456 ProSitePatterns PS00218 Amino acid permeases signature. 47 77 - T 12-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 ALFP_0824 15b181ba88d13043b20e493332be6372 131 Gene3D G3DSA:3.10.180.10 1 129 6.0E-50 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_0824 15b181ba88d13043b20e493332be6372 131 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 123 1.2E-24 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain ALFP_0824 15b181ba88d13043b20e493332be6372 131 SUPERFAMILY SSF54593 1 128 9.26E-39 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_0824 15b181ba88d13043b20e493332be6372 131 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 12-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 ALFP_0824 15b181ba88d13043b20e493332be6372 131 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 127 8.0E-65 T 12-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 ALFP_0959 b1ff3f35bfe643e3073f8d7027d73742 309 Pfam PF00698 Acyl transferase domain 54 283 5.1E-17 T 12-10-2018 IPR014043 Acyl transferase ALFP_0959 b1ff3f35bfe643e3073f8d7027d73742 309 Gene3D G3DSA:3.30.70.250 128 192 1.3E-55 T 12-10-2018 ALFP_0959 b1ff3f35bfe643e3073f8d7027d73742 309 Gene3D G3DSA:3.40.366.10 4 280 1.3E-55 T 12-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 ALFP_0959 b1ff3f35bfe643e3073f8d7027d73742 309 SUPERFAMILY SSF55048 129 192 2.09E-9 T 12-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding ALFP_0959 b1ff3f35bfe643e3073f8d7027d73742 309 SUPERFAMILY SSF52151 2 294 8.89E-39 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase ALFP_0959 b1ff3f35bfe643e3073f8d7027d73742 309 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 303 1.5E-15 T 12-10-2018 IPR020801 Polyketide synthase, acyl transferase domain ALFP_1588 402968b5c809151683da6ab30b23b218 553 Pfam PF00501 AMP-binding enzyme 33 442 2.1E-65 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_1588 402968b5c809151683da6ab30b23b218 553 SUPERFAMILY SSF56801 16 538 8.11E-114 T 12-10-2018 ALFP_1588 402968b5c809151683da6ab30b23b218 553 Gene3D G3DSA:3.40.50.12780 7 437 3.7E-83 T 12-10-2018 ALFP_1588 402968b5c809151683da6ab30b23b218 553 Pfam PF13193 AMP-binding enzyme C-terminal domain 452 528 8.2E-9 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain ALFP_1588 402968b5c809151683da6ab30b23b218 553 Gene3D G3DSA:3.30.300.310 438 542 2.2E-23 T 12-10-2018 ALFP_0759 2e79c590ffa4b5f1676784ac0d1309ce 210 Gene3D G3DSA:2.30.110.10 2 210 5.2E-82 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 ALFP_0759 2e79c590ffa4b5f1676784ac0d1309ce 210 PIRSF PIRSF000190 1 210 4.2E-82 T 12-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 ALFP_0759 2e79c590ffa4b5f1676784ac0d1309ce 210 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 42 118 4.4E-23 T 12-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 ALFP_0759 2e79c590ffa4b5f1676784ac0d1309ce 210 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 179 192 - T 12-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 ALFP_0759 2e79c590ffa4b5f1676784ac0d1309ce 210 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 169 210 1.3E-19 T 12-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 ALFP_0759 2e79c590ffa4b5f1676784ac0d1309ce 210 SUPERFAMILY SSF50475 15 210 2.06E-63 T 12-10-2018 ALFP_0759 2e79c590ffa4b5f1676784ac0d1309ce 210 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 1 210 1.5E-83 T 12-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 ALFP_0759 2e79c590ffa4b5f1676784ac0d1309ce 210 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 9 210 37.839 T 12-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 ALFP_1017 5dc5d3fec3ac684bceea0b4bfff18a45 508 Gene3D G3DSA:3.40.605.10 37 493 1.0E-165 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_1017 5dc5d3fec3ac684bceea0b4bfff18a45 508 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 263 270 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 ALFP_1017 5dc5d3fec3ac684bceea0b4bfff18a45 508 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 296 307 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 ALFP_1017 5dc5d3fec3ac684bceea0b4bfff18a45 508 Pfam PF00171 Aldehyde dehydrogenase family 29 494 1.5E-165 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_1017 5dc5d3fec3ac684bceea0b4bfff18a45 508 SUPERFAMILY SSF53720 16 500 1.44E-162 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_1017 5dc5d3fec3ac684bceea0b4bfff18a45 508 Gene3D G3DSA:3.40.309.10 267 465 1.0E-165 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_3665 0d0ef7826d02fe0a27867c60003dfac6 203 Gene3D G3DSA:2.40.30.10 121 203 6.8E-19 T 12-10-2018 ALFP_3665 0d0ef7826d02fe0a27867c60003dfac6 203 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 1 200 34.482 T 12-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3665 0d0ef7826d02fe0a27867c60003dfac6 203 SUPERFAMILY SSF50447 1 201 1.5E-72 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily ALFP_3665 0d0ef7826d02fe0a27867c60003dfac6 203 Gene3D G3DSA:2.40.50.620 21 84 5.0E-14 T 12-10-2018 ALFP_3665 0d0ef7826d02fe0a27867c60003dfac6 203 Pfam PF00297 Ribosomal protein L3 44 175 9.4E-20 T 12-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3665 0d0ef7826d02fe0a27867c60003dfac6 203 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 1 197 4.8E-82 T 12-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3665 0d0ef7826d02fe0a27867c60003dfac6 203 ProSitePatterns PS00474 Ribosomal protein L3 signature. 94 117 - T 12-10-2018 IPR019926 Ribosomal protein L3, conserved site ALFP_1020 9104617e6b8c24a2ccd50799ea098576 379 TIGRFAM TIGR03837 efp_adjacent_2: conserved hypothetical protein, PP_1857 family 12 372 2.7E-116 T 12-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 ALFP_1020 9104617e6b8c24a2ccd50799ea098576 379 PIRSF PIRSF015557 7 377 6.4E-115 T 12-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 ALFP_1020 9104617e6b8c24a2ccd50799ea098576 379 Pfam PF10093 Uncharacterized protein conserved in bacteria (DUF2331) 12 372 2.4E-117 T 12-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 ALFP_1400 e53df6c54f3d296028db111131d76bb3 313 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 280 2.5E-49 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 ALFP_1400 e53df6c54f3d296028db111131d76bb3 313 Gene3D G3DSA:3.40.50.720 99 283 3.7E-106 T 12-10-2018 ALFP_1400 e53df6c54f3d296028db111131d76bb3 313 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 146 173 - T 12-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 ALFP_1400 e53df6c54f3d296028db111131d76bb3 313 SUPERFAMILY SSF52283 21 135 1.02E-27 T 12-10-2018 ALFP_1400 e53df6c54f3d296028db111131d76bb3 313 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 18 309 9.9E-24 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 ALFP_1400 e53df6c54f3d296028db111131d76bb3 313 SUPERFAMILY SSF51735 99 281 1.78E-51 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1400 e53df6c54f3d296028db111131d76bb3 313 Gene3D G3DSA:3.40.50.720 25 305 3.7E-106 T 12-10-2018 ALFP_0397 fb989a807edd0bc19c651a1b7716b2f3 286 Gene3D G3DSA:3.40.50.10490 101 283 8.8E-26 T 12-10-2018 ALFP_0397 fb989a807edd0bc19c651a1b7716b2f3 286 SUPERFAMILY SSF53697 112 260 7.08E-17 T 12-10-2018 ALFP_0397 fb989a807edd0bc19c651a1b7716b2f3 286 Pfam PF01418 Helix-turn-helix domain, rpiR family 7 78 2.7E-11 T 12-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 ALFP_0397 fb989a807edd0bc19c651a1b7716b2f3 286 Gene3D G3DSA:1.10.10.10 1 79 3.0E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0397 fb989a807edd0bc19c651a1b7716b2f3 286 Pfam PF01380 SIS domain 131 256 9.5E-15 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 ALFP_0397 fb989a807edd0bc19c651a1b7716b2f3 286 SUPERFAMILY SSF46689 6 80 1.34E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_3339 53032753f05fb6413914f4654a1c392a 327 SUPERFAMILY SSF53850 51 309 2.17E-20 T 12-10-2018 ALFP_3339 53032753f05fb6413914f4654a1c392a 327 Pfam PF02621 Menaquinone biosynthesis 66 268 1.8E-6 T 12-10-2018 IPR003773 Menaquinone biosynthesis enzyme ALFP_3339 53032753f05fb6413914f4654a1c392a 327 PIRSF PIRSF027386 2 327 3.3E-69 T 12-10-2018 IPR027024 ABC-type uncharacterised transport system, substrate-binding component, TM0202 type ALFP_3339 53032753f05fb6413914f4654a1c392a 327 Gene3D G3DSA:3.40.190.10 29 130 1.6E-12 T 12-10-2018 ALFP_3339 53032753f05fb6413914f4654a1c392a 327 Gene3D G3DSA:3.40.190.10 131 326 9.7E-32 T 12-10-2018 ALFP_0596 9190f6bc9ab335599aa74ed598bc16b2 61 SUPERFAMILY SSF55331 1 60 6.94E-17 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily ALFP_0596 9190f6bc9ab335599aa74ed598bc16b2 61 Gene3D G3DSA:3.30.429.10 1 61 1.6E-20 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily ALFP_0596 9190f6bc9ab335599aa74ed598bc16b2 61 Pfam PF01361 Tautomerase enzyme 2 57 3.9E-11 T 12-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 SUPERFAMILY SSF51905 31 391 4.2E-41 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 Gene3D G3DSA:3.30.390.30 375 489 2.4E-36 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 Gene3D G3DSA:3.50.50.60 177 297 1.3E-92 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 37 59 2.8E-43 T 12-10-2018 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 335 342 2.8E-43 T 12-10-2018 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 291 305 2.8E-43 T 12-10-2018 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 433 448 2.8E-43 T 12-10-2018 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 69 84 2.8E-43 T 12-10-2018 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 177 2.8E-43 T 12-10-2018 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 204 229 2.8E-43 T 12-10-2018 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 372 393 2.8E-43 T 12-10-2018 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 455 475 2.8E-43 T 12-10-2018 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 37 352 4.2E-40 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 SUPERFAMILY SSF55424 376 486 1.19E-22 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 38 57 3.5E-18 T 12-10-2018 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 204 222 3.5E-18 T 12-10-2018 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 320 342 3.5E-18 T 12-10-2018 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 306 3.5E-18 T 12-10-2018 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 165 183 3.5E-18 T 12-10-2018 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 378 480 7.9E-14 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 Gene3D G3DSA:1.10.287.990 67 137 1.3E-92 T 12-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 Gene3D G3DSA:3.50.50.60 37 358 1.3E-92 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1993 041958b69283249a7edaea7ac92e0a91 491 PIRSF PIRSF000350 24 486 4.1E-57 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 ALFP_1013 92f1523423f9c2c6e328e98b0bc9cc8a 561 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 248 282 9.4E-5 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ALFP_1013 92f1523423f9c2c6e328e98b0bc9cc8a 561 SMART SM00382 337 533 7.0E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1013 92f1523423f9c2c6e328e98b0bc9cc8a 561 SMART SM00382 47 246 4.2E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1013 92f1523423f9c2c6e328e98b0bc9cc8a 561 Pfam PF00005 ABC transporter 329 484 2.9E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1013 92f1523423f9c2c6e328e98b0bc9cc8a 561 SUPERFAMILY SSF52540 19 267 2.01E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1013 92f1523423f9c2c6e328e98b0bc9cc8a 561 Gene3D G3DSA:3.40.50.300 16 300 2.3E-78 T 12-10-2018 ALFP_1013 92f1523423f9c2c6e328e98b0bc9cc8a 561 Gene3D G3DSA:3.40.50.300 301 561 9.7E-83 T 12-10-2018 ALFP_1013 92f1523423f9c2c6e328e98b0bc9cc8a 561 ProSitePatterns PS00211 ABC transporters family signature. 456 470 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1013 92f1523423f9c2c6e328e98b0bc9cc8a 561 SUPERFAMILY SSF52540 303 554 2.46E-66 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1013 92f1523423f9c2c6e328e98b0bc9cc8a 561 Pfam PF00005 ABC transporter 39 196 3.8E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1013 92f1523423f9c2c6e328e98b0bc9cc8a 561 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0181 5629a1bb2a4890c16738c272775535fa 312 Gene3D G3DSA:1.10.10.10 1 83 1.9E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0181 5629a1bb2a4890c16738c272775535fa 312 SUPERFAMILY SSF46785 1 109 4.84E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0181 5629a1bb2a4890c16738c272775535fa 312 Gene3D G3DSA:3.40.190.290 90 298 1.5E-20 T 12-10-2018 ALFP_0181 5629a1bb2a4890c16738c272775535fa 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 8.0E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0181 5629a1bb2a4890c16738c272775535fa 312 SUPERFAMILY SSF53850 88 294 3.67E-29 T 12-10-2018 ALFP_0181 5629a1bb2a4890c16738c272775535fa 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.5E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0181 5629a1bb2a4890c16738c272775535fa 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.5E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0181 5629a1bb2a4890c16738c272775535fa 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.5E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0181 5629a1bb2a4890c16738c272775535fa 312 Pfam PF03466 LysR substrate binding domain 86 289 6.5E-30 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1574 fe8d1abc57847e783a53f6d1a6ff6725 178 Gene3D G3DSA:2.60.40.2230 24 178 3.4E-32 T 12-10-2018 IPR038507 YcnI-like superfamily ALFP_1574 fe8d1abc57847e783a53f6d1a6ff6725 178 Pfam PF07987 Domain of unkown function (DUF1775) 26 174 2.6E-48 T 12-10-2018 IPR012533 YcnI-like ALFP_0718 125efa42d4a0e3e8ec10bd42b9d98901 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 2.2E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0718 125efa42d4a0e3e8ec10bd42b9d98901 292 SUPERFAMILY SSF46785 6 85 2.73E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0718 125efa42d4a0e3e8ec10bd42b9d98901 292 Gene3D G3DSA:3.40.190.10 102 285 1.2E-40 T 12-10-2018 ALFP_0718 125efa42d4a0e3e8ec10bd42b9d98901 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.4E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0718 125efa42d4a0e3e8ec10bd42b9d98901 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.4E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0718 125efa42d4a0e3e8ec10bd42b9d98901 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.4E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0718 125efa42d4a0e3e8ec10bd42b9d98901 292 Pfam PF03466 LysR substrate binding domain 92 287 3.3E-25 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0718 125efa42d4a0e3e8ec10bd42b9d98901 292 Gene3D G3DSA:1.10.10.10 5 94 1.8E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0718 125efa42d4a0e3e8ec10bd42b9d98901 292 SUPERFAMILY SSF53850 93 289 1.77E-28 T 12-10-2018 ALFP_0718 125efa42d4a0e3e8ec10bd42b9d98901 292 Gene3D G3DSA:3.40.190.10 162 260 1.2E-40 T 12-10-2018 ALFP_0720 f3835ad18823b59f0c9c836c349758c9 321 Gene3D G3DSA:2.40.30.10 1 104 1.2E-23 T 12-10-2018 ALFP_0720 f3835ad18823b59f0c9c836c349758c9 321 Gene3D G3DSA:3.40.50.80 108 222 9.8E-21 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_0720 f3835ad18823b59f0c9c836c349758c9 321 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 270 278 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ALFP_0720 f3835ad18823b59f0c9c836c349758c9 321 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 239 312 1.7E-10 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_0720 f3835ad18823b59f0c9c836c349758c9 321 SUPERFAMILY SSF63380 2 103 7.61E-22 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_0720 f3835ad18823b59f0c9c836c349758c9 321 SUPERFAMILY SSF54292 220 319 2.23E-23 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_0720 f3835ad18823b59f0c9c836c349758c9 321 Pfam PF00970 Oxidoreductase FAD-binding domain 8 105 2.2E-5 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 ALFP_0720 f3835ad18823b59f0c9c836c349758c9 321 SUPERFAMILY SSF52343 101 225 4.58E-24 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_0720 f3835ad18823b59f0c9c836c349758c9 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 190 198 1.4E-12 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_0720 f3835ad18823b59f0c9c836c349758c9 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 29 39 1.4E-12 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_0720 f3835ad18823b59f0c9c836c349758c9 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 139 148 1.4E-12 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_0720 f3835ad18823b59f0c9c836c349758c9 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 39 51 1.4E-12 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_0720 f3835ad18823b59f0c9c836c349758c9 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 114 133 1.4E-12 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_0720 f3835ad18823b59f0c9c836c349758c9 321 Pfam PF00175 Oxidoreductase NAD-binding domain 115 201 6.7E-6 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ALFP_0720 f3835ad18823b59f0c9c836c349758c9 321 Gene3D G3DSA:3.10.20.30 226 321 9.7E-26 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_2944 abc98b7ae619aa37b70683625b3fb395 278 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 5 174 2.3E-41 T 12-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 ALFP_2944 abc98b7ae619aa37b70683625b3fb395 278 Gene3D G3DSA:3.30.43.10 1 57 6.6E-12 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 ALFP_2944 abc98b7ae619aa37b70683625b3fb395 278 SUPERFAMILY SSF55447 179 260 9.61E-5 T 12-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily ALFP_2944 abc98b7ae619aa37b70683625b3fb395 278 Gene3D G3DSA:3.30.465.10 58 174 6.0E-35 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 ALFP_2944 abc98b7ae619aa37b70683625b3fb395 278 SUPERFAMILY SSF56176 4 173 8.36E-44 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 ALFP_0624 90084f11dd1bb4fbdb38a2e01fe183f4 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 3.8E-159 T 12-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 ALFP_0624 90084f11dd1bb4fbdb38a2e01fe183f4 363 Gene3D G3DSA:3.10.20.30 48 361 7.1E-151 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_0624 90084f11dd1bb4fbdb38a2e01fe183f4 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 44.442 T 12-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 ALFP_0624 90084f11dd1bb4fbdb38a2e01fe183f4 363 SUPERFAMILY SSF52540 3 301 1.38E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0624 90084f11dd1bb4fbdb38a2e01fe183f4 363 Gene3D G3DSA:1.10.150.300 113 200 7.1E-151 T 12-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 ALFP_0624 90084f11dd1bb4fbdb38a2e01fe183f4 363 Pfam PF01926 50S ribosome-binding GTPase 5 121 1.1E-22 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_0624 90084f11dd1bb4fbdb38a2e01fe183f4 363 Gene3D G3DSA:3.40.50.300 3 278 7.1E-151 T 12-10-2018 ALFP_0624 90084f11dd1bb4fbdb38a2e01fe183f4 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 1.3E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_0624 90084f11dd1bb4fbdb38a2e01fe183f4 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 1.3E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_0624 90084f11dd1bb4fbdb38a2e01fe183f4 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 1.3E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_0624 90084f11dd1bb4fbdb38a2e01fe183f4 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.3E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_0624 90084f11dd1bb4fbdb38a2e01fe183f4 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 4.3E-39 T 12-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 ALFP_0624 90084f11dd1bb4fbdb38a2e01fe183f4 363 SUPERFAMILY SSF81271 279 359 1.77E-35 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 ALFP_0624 90084f11dd1bb4fbdb38a2e01fe183f4 363 PIRSF PIRSF006641 1 363 3.2E-153 T 12-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 ALFP_1551 eab83af89d84446b3fb7f034bcfe4981 310 Pfam PF03466 LysR substrate binding domain 94 295 2.2E-21 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1551 eab83af89d84446b3fb7f034bcfe4981 310 SUPERFAMILY SSF46785 2 82 1.69E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1551 eab83af89d84446b3fb7f034bcfe4981 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.4E-12 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1551 eab83af89d84446b3fb7f034bcfe4981 310 Gene3D G3DSA:3.40.190.10 169 268 2.2E-51 T 12-10-2018 ALFP_1551 eab83af89d84446b3fb7f034bcfe4981 310 Gene3D G3DSA:1.10.10.10 1 86 3.8E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1551 eab83af89d84446b3fb7f034bcfe4981 310 Gene3D G3DSA:3.40.190.10 93 292 2.2E-51 T 12-10-2018 ALFP_1551 eab83af89d84446b3fb7f034bcfe4981 310 SUPERFAMILY SSF53850 92 295 2.53E-33 T 12-10-2018 ALFP_3416 036f10f28c3ff6d5a2f27d71767214c1 397 SUPERFAMILY SSF53901 275 396 3.34E-41 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_3416 036f10f28c3ff6d5a2f27d71767214c1 397 Gene3D G3DSA:3.40.47.10 131 393 4.1E-144 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_3416 036f10f28c3ff6d5a2f27d71767214c1 397 PIRSF PIRSF000429 1 397 4.4E-128 T 12-10-2018 IPR002155 Thiolase GO:0016747 ALFP_3416 036f10f28c3ff6d5a2f27d71767214c1 397 ProSitePatterns PS00737 Thiolases signature 2. 343 359 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 ALFP_3416 036f10f28c3ff6d5a2f27d71767214c1 397 Gene3D G3DSA:3.40.47.10 8 280 4.1E-144 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_3416 036f10f28c3ff6d5a2f27d71767214c1 397 SUPERFAMILY SSF53901 3 272 7.4E-76 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_3416 036f10f28c3ff6d5a2f27d71767214c1 397 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 89 107 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 ALFP_3416 036f10f28c3ff6d5a2f27d71767214c1 397 ProSitePatterns PS00099 Thiolases active site. 378 391 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 ALFP_3416 036f10f28c3ff6d5a2f27d71767214c1 397 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 395 4.6E-140 T 12-10-2018 IPR002155 Thiolase GO:0016747 ALFP_3416 036f10f28c3ff6d5a2f27d71767214c1 397 Pfam PF00108 Thiolase, N-terminal domain 7 266 1.5E-76 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 ALFP_3416 036f10f28c3ff6d5a2f27d71767214c1 397 Pfam PF02803 Thiolase, C-terminal domain 274 396 1.7E-42 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 ALFP_0704 dd8e2202465e697f755896cc0a9b3226 466 Pfam PF04055 Radical SAM superfamily 168 343 3.9E-30 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 ALFP_0704 dd8e2202465e697f755896cc0a9b3226 466 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 21 455 7.2E-149 T 12-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 ALFP_0704 dd8e2202465e697f755896cc0a9b3226 466 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 20 459 73.698 T 12-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 ALFP_0704 dd8e2202465e697f755896cc0a9b3226 466 SMART SM00729 164 382 2.9E-59 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 ALFP_0704 dd8e2202465e697f755896cc0a9b3226 466 SUPERFAMILY SSF102114 146 389 1.7E-58 T 12-10-2018 ALFP_0704 dd8e2202465e697f755896cc0a9b3226 466 Gene3D G3DSA:3.80.30.20 162 397 2.8E-83 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe ALFP_0704 dd8e2202465e697f755896cc0a9b3226 466 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 168 188 - T 12-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 ALFP_0704 dd8e2202465e697f755896cc0a9b3226 466 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 21 458 4.5E-180 T 12-10-2018 ALFP_0704 dd8e2202465e697f755896cc0a9b3226 466 Gene3D G3DSA:3.40.50.12160 20 153 1.9E-32 T 12-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily ALFP_0704 dd8e2202465e697f755896cc0a9b3226 466 Pfam PF00919 Uncharacterized protein family UPF0004 21 121 4.9E-29 T 12-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 ALFP_0704 dd8e2202465e697f755896cc0a9b3226 466 Pfam PF01938 TRAM domain 396 458 8.9E-19 T 12-10-2018 IPR002792 TRAM domain ALFP_0902 ac1447a853f9c579a02026b6ea30a656 690 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 9 685 2.3E-277 T 12-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 ALFP_0902 ac1447a853f9c579a02026b6ea30a656 690 Gene3D G3DSA:3.30.870.10 507 688 6.0E-64 T 12-10-2018 ALFP_0902 ac1447a853f9c579a02026b6ea30a656 690 Pfam PF02503 Polyphosphate kinase middle domain 124 322 2.5E-58 T 12-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 ALFP_0902 ac1447a853f9c579a02026b6ea30a656 690 SUPERFAMILY SSF143724 120 318 7.85E-60 T 12-10-2018 ALFP_0902 ac1447a853f9c579a02026b6ea30a656 690 SUPERFAMILY SSF56024 331 499 4.71E-53 T 12-10-2018 ALFP_0902 ac1447a853f9c579a02026b6ea30a656 690 Pfam PF13089 Polyphosphate kinase N-terminal domain 10 114 2.1E-32 T 12-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 ALFP_0902 ac1447a853f9c579a02026b6ea30a656 690 Hamap MF_00347 Polyphosphate kinase [ppk]. 6 689 27.194 T 12-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 ALFP_0902 ac1447a853f9c579a02026b6ea30a656 690 PIRSF PIRSF015589 3 689 3.8E-255 T 12-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 ALFP_0902 ac1447a853f9c579a02026b6ea30a656 690 SUPERFAMILY SSF56024 508 686 1.12E-67 T 12-10-2018 ALFP_0902 ac1447a853f9c579a02026b6ea30a656 690 Gene3D G3DSA:3.30.870.10 327 506 7.1E-70 T 12-10-2018 ALFP_0902 ac1447a853f9c579a02026b6ea30a656 690 Pfam PF13090 Polyphosphate kinase C-terminal domain 339 684 1.2E-149 T 12-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 ALFP_0902 ac1447a853f9c579a02026b6ea30a656 690 SUPERFAMILY SSF140356 7 109 6.28E-32 T 12-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 ALFP_0902 ac1447a853f9c579a02026b6ea30a656 690 Gene3D G3DSA:3.30.1840.10 4 315 1.2E-92 T 12-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 ALFP_2814 f5d32d40733c9187235a494870c926e2 356 SUPERFAMILY SSF52540 34 265 4.65E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2814 f5d32d40733c9187235a494870c926e2 356 SMART SM00382 65 193 3.3E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2814 f5d32d40733c9187235a494870c926e2 356 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 356 181.331 T 12-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 ALFP_2814 f5d32d40733c9187235a494870c926e2 356 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 264 342 1.0E-37 T 12-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 ALFP_2814 f5d32d40733c9187235a494870c926e2 356 Gene3D G3DSA:1.10.10.10 271 349 1.3E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2814 f5d32d40733c9187235a494870c926e2 356 Gene3D G3DSA:3.40.50.300 34 195 6.7E-40 T 12-10-2018 ALFP_2814 f5d32d40733c9187235a494870c926e2 356 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 37 340 2.4E-146 T 12-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 ALFP_2814 f5d32d40733c9187235a494870c926e2 356 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 267 340 2.1E-33 T 12-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 ALFP_2814 f5d32d40733c9187235a494870c926e2 356 SUPERFAMILY SSF46785 271 344 4.14E-26 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2814 f5d32d40733c9187235a494870c926e2 356 Gene3D G3DSA:1.10.8.60 196 269 1.9E-29 T 12-10-2018 ALFP_2814 f5d32d40733c9187235a494870c926e2 356 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 24 248 6.2E-118 T 12-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 ALFP_2973 73489610b309089799a0e9a7432133c5 323 Gene3D G3DSA:3.40.190.150 29 313 4.8E-117 T 12-10-2018 ALFP_2973 73489610b309089799a0e9a7432133c5 323 Gene3D G3DSA:3.40.190.10 125 248 4.8E-117 T 12-10-2018 ALFP_2973 73489610b309089799a0e9a7432133c5 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 320 8.3E-84 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_2973 73489610b309089799a0e9a7432133c5 323 PIRSF PIRSF017082 1 323 3.3E-84 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_2973 73489610b309089799a0e9a7432133c5 323 SUPERFAMILY SSF53850 113 283 3.0E-9 T 12-10-2018 ALFP_3491 de95c989b8424006ded23249d2206018 510 Pfam PF08946 Osmosensory transporter coiled coil 458 510 1.2E-16 T 12-10-2018 IPR015041 Osmosensory transporter coiled coil ALFP_3491 de95c989b8424006ded23249d2206018 510 Gene3D G3DSA:1.20.1250.20 28 465 1.3E-75 T 12-10-2018 ALFP_3491 de95c989b8424006ded23249d2206018 510 Pfam PF00083 Sugar (and other) transporter 31 450 1.1E-60 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ALFP_3491 de95c989b8424006ded23249d2206018 510 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 37 436 3.7E-135 T 12-10-2018 IPR004736 MFS transporter, metabolite:H symporter GO:0016021|GO:0022857|GO:0055085 ALFP_3491 de95c989b8424006ded23249d2206018 510 SUPERFAMILY SSF103473 28 451 1.11E-71 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_3491 de95c989b8424006ded23249d2206018 510 ProSitePatterns PS00216 Sugar transport proteins signature 1. 319 336 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ALFP_0897 4be075e6ab9489f565c3495ff92772a0 626 Gene3D G3DSA:2.40.50.920 20 92 3.0E-6 T 12-10-2018 ALFP_0897 4be075e6ab9489f565c3495ff92772a0 626 Gene3D G3DSA:1.10.8.60 314 390 6.5E-30 T 12-10-2018 ALFP_0897 4be075e6ab9489f565c3495ff92772a0 626 Pfam PF01434 Peptidase family M41 373 581 7.2E-81 T 12-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 ALFP_0897 4be075e6ab9489f565c3495ff92772a0 626 Gene3D G3DSA:3.40.50.300 128 313 5.8E-69 T 12-10-2018 ALFP_0897 4be075e6ab9489f565c3495ff92772a0 626 Gene3D G3DSA:1.20.58.760 393 591 2.1E-74 T 12-10-2018 ALFP_0897 4be075e6ab9489f565c3495ff92772a0 626 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 179 311 1.0E-44 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 ALFP_0897 4be075e6ab9489f565c3495ff92772a0 626 SUPERFAMILY SSF52540 135 382 1.02E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0897 4be075e6ab9489f565c3495ff92772a0 626 SMART SM00382 175 314 3.5E-25 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0897 4be075e6ab9489f565c3495ff92772a0 626 ProSitePatterns PS00674 AAA-protein family signature. 282 300 - T 12-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 ALFP_0897 4be075e6ab9489f565c3495ff92772a0 626 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 1 599 37.219 T 12-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 ALFP_0897 4be075e6ab9489f565c3495ff92772a0 626 SUPERFAMILY SSF140990 393 589 9.55E-76 T 12-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 ALFP_0897 4be075e6ab9489f565c3495ff92772a0 626 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 91 583 4.1E-238 T 12-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 ALFP_1877 711cda76835a18361a8d64359a8eef88 262 Pfam PF00005 ABC transporter 25 168 5.7E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1877 711cda76835a18361a8d64359a8eef88 262 SMART SM00382 33 218 4.5E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1877 711cda76835a18361a8d64359a8eef88 262 SUPERFAMILY SSF52540 5 245 1.73E-80 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1877 711cda76835a18361a8d64359a8eef88 262 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1877 711cda76835a18361a8d64359a8eef88 262 Gene3D G3DSA:3.40.50.300 2 260 1.2E-73 T 12-10-2018 ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 Pfam PF16124 RecQ zinc-binding 336 397 1.2E-16 T 12-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 Gene3D G3DSA:3.40.50.300 1 200 3.2E-80 T 12-10-2018 ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 SMART SM00341 532 608 1.8E-13 T 12-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 Pfam PF00271 Helicase conserved C-terminal domain 217 323 3.5E-16 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 7 604 9.9E-234 T 12-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 Gene3D G3DSA:1.10.10.10 334 521 2.5E-44 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 SMART SM00956 404 511 4.8E-47 T 12-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 Gene3D G3DSA:3.40.50.300 201 333 2.4E-39 T 12-10-2018 ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 Pfam PF09382 RQC domain 400 512 1.2E-35 T 12-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 Gene3D G3DSA:1.10.150.80 535 605 2.0E-20 T 12-10-2018 ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 SUPERFAMILY SSF52540 5 188 5.99E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 SUPERFAMILY SSF52540 200 451 7.52E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 SUPERFAMILY SSF47819 531 605 1.13E-20 T 12-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 Pfam PF00570 HRDC domain 535 602 4.9E-21 T 12-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 SMART SM00487 14 210 5.5E-29 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 SMART SM00490 243 324 2.0E-24 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 Pfam PF00270 DEAD/DEAH box helicase 22 177 5.4E-18 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ALFP_0780 86b291da3f1367c0b03ef0d065ff8f8c 608 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 7 460 7.1E-153 T 12-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 ALFP_1304 4b00daedf6f64a810646d98217d1ce2c 220 SMART SM00862 145 216 7.2E-22 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_1304 4b00daedf6f64a810646d98217d1ce2c 220 SMART SM00448 1 112 7.7E-33 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_1304 4b00daedf6f64a810646d98217d1ce2c 220 SUPERFAMILY SSF52172 1 124 1.99E-32 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_1304 4b00daedf6f64a810646d98217d1ce2c 220 Pfam PF00072 Response regulator receiver domain 3 112 4.8E-20 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_1304 4b00daedf6f64a810646d98217d1ce2c 220 Gene3D G3DSA:3.40.50.2300 1 121 1.6E-32 T 12-10-2018 ALFP_1304 4b00daedf6f64a810646d98217d1ce2c 220 SUPERFAMILY SSF46894 120 216 6.52E-24 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ALFP_1304 4b00daedf6f64a810646d98217d1ce2c 220 Gene3D G3DSA:1.10.10.10 123 219 4.1E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1304 4b00daedf6f64a810646d98217d1ce2c 220 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 2.5E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_2672 29724482730dacb180b407a6debb70ad 308 SUPERFAMILY SSF46689 252 304 1.1E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2672 29724482730dacb180b407a6debb70ad 308 Pfam PF14525 AraC-binding-like domain 12 186 6.4E-19 T 12-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like ALFP_2672 29724482730dacb180b407a6debb70ad 308 Pfam PF12833 Helix-turn-helix domain 223 304 1.6E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_2672 29724482730dacb180b407a6debb70ad 308 SMART SM00342 217 302 1.5E-23 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_2672 29724482730dacb180b407a6debb70ad 308 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 286 302 1.6E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_2672 29724482730dacb180b407a6debb70ad 308 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 271 286 1.6E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_2672 29724482730dacb180b407a6debb70ad 308 Gene3D G3DSA:1.10.10.60 199 308 4.7E-27 T 12-10-2018 ALFP_3619 821e82eb46df3fa4bcd947b225eade88 441 Hamap MF_01465 Protein translocase subunit SecY [secY]. 8 428 29.628 T 12-10-2018 IPR026593 Protein translocase subunit SecY ALFP_3619 821e82eb46df3fa4bcd947b225eade88 441 Gene3D G3DSA:1.10.3370.10 9 424 9.7E-164 T 12-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 ALFP_3619 821e82eb46df3fa4bcd947b225eade88 441 Pfam PF00344 SecY translocase 74 412 3.5E-118 T 12-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 ALFP_3619 821e82eb46df3fa4bcd947b225eade88 441 ProSitePatterns PS00756 Protein secY signature 2. 168 185 - T 12-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 ALFP_3619 821e82eb46df3fa4bcd947b225eade88 441 PIRSF PIRSF004557 2 436 2.2E-127 T 12-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 ALFP_3619 821e82eb46df3fa4bcd947b225eade88 441 SUPERFAMILY SSF103491 13 419 2.09E-132 T 12-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 ALFP_3619 821e82eb46df3fa4bcd947b225eade88 441 ProSitePatterns PS00755 Protein secY signature 1. 74 93 - T 12-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 ALFP_3619 821e82eb46df3fa4bcd947b225eade88 441 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 18 424 4.2E-134 T 12-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 ALFP_3619 821e82eb46df3fa4bcd947b225eade88 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 73 93 4.5E-94 T 12-10-2018 ALFP_3619 821e82eb46df3fa4bcd947b225eade88 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 149 174 4.5E-94 T 12-10-2018 ALFP_3619 821e82eb46df3fa4bcd947b225eade88 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 21 39 4.5E-94 T 12-10-2018 ALFP_3619 821e82eb46df3fa4bcd947b225eade88 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 175 198 4.5E-94 T 12-10-2018 ALFP_3619 821e82eb46df3fa4bcd947b225eade88 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 397 415 4.5E-94 T 12-10-2018 ALFP_3619 821e82eb46df3fa4bcd947b225eade88 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 365 383 4.5E-94 T 12-10-2018 ALFP_3619 821e82eb46df3fa4bcd947b225eade88 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 114 137 4.5E-94 T 12-10-2018 ALFP_3619 821e82eb46df3fa4bcd947b225eade88 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 267 286 4.5E-94 T 12-10-2018 ALFP_3619 821e82eb46df3fa4bcd947b225eade88 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 310 332 4.5E-94 T 12-10-2018 ALFP_1371 dc2a7a2d3266fbc301c45bf0dce7c49e 230 Pfam PF04391 Protein of unknown function (DUF533) 36 224 6.8E-61 T 12-10-2018 IPR007486 Inner membrane protein YebE ALFP_1371 dc2a7a2d3266fbc301c45bf0dce7c49e 230 SUPERFAMILY SSF158682 71 225 2.62E-21 T 12-10-2018 IPR029024 TerB-like ALFP_1371 dc2a7a2d3266fbc301c45bf0dce7c49e 230 Gene3D G3DSA:1.10.3680.10 107 230 2.7E-9 T 12-10-2018 IPR029024 TerB-like ALFP_0832 96236eb5c3f9c7e9ec5e0be3bf716688 506 Pfam PF05681 Fumarate hydratase (Fumerase) 11 284 8.0E-101 T 12-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 ALFP_0832 96236eb5c3f9c7e9ec5e0be3bf716688 506 PIRSF PIRSF001394 1 506 4.9E-211 T 12-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 ALFP_0832 96236eb5c3f9c7e9ec5e0be3bf716688 506 Gene3D G3DSA:3.20.130.10 305 489 5.5E-59 T 12-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 ALFP_0832 96236eb5c3f9c7e9ec5e0be3bf716688 506 Pfam PF05683 Fumarase C-terminus 288 489 1.2E-80 T 12-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 ALFP_0832 96236eb5c3f9c7e9ec5e0be3bf716688 506 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 326 487 8.0E-48 T 12-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 ALFP_0832 96236eb5c3f9c7e9ec5e0be3bf716688 506 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 12 282 1.7E-64 T 12-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 ALFP_0832 96236eb5c3f9c7e9ec5e0be3bf716688 506 SUPERFAMILY SSF117457 318 487 3.79E-61 T 12-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 SMART SM01193 4 134 2.9E-91 T 12-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 Pfam PF03952 Enolase, N-terminal domain 4 133 5.9E-57 T 12-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 SUPERFAMILY SSF54826 4 136 3.76E-54 T 12-10-2018 ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 Pfam PF00113 Enolase, C-terminal TIM barrel domain 140 425 1.2E-130 T 12-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 Hamap MF_00318 Enolase [eno]. 2 412 44.43 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 PIRSF PIRSF001400 1 426 1.0E-188 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 ProSitePatterns PS00164 Enolase signature. 335 348 - T 12-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 426 1.7E-206 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 SMART SM01192 139 426 1.3E-219 T 12-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 Gene3D G3DSA:3.20.20.120 128 428 3.1E-131 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 PRINTS PR00148 Enolase signature 37 51 4.4E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 PRINTS PR00148 Enolase signature 335 349 4.4E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 PRINTS PR00148 Enolase signature 107 123 4.4E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 PRINTS PR00148 Enolase signature 161 174 4.4E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 PRINTS PR00148 Enolase signature 312 323 4.4E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 PRINTS PR00148 Enolase signature 364 381 4.4E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 Gene3D G3DSA:3.30.390.10 1 127 4.2E-55 T 12-10-2018 IPR029017 Enolase-like, N-terminal ALFP_2487 2998f8b214d47bc39cacadc70e32c930 428 SUPERFAMILY SSF51604 139 427 1.98E-128 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily ALFP_3596 9c0927641cf2bdc27ec558dcb3425632 362 Pfam PF01761 3-dehydroquinate synthase 66 323 3.7E-107 T 12-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 ALFP_3596 9c0927641cf2bdc27ec558dcb3425632 362 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 349 8.4E-120 T 12-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 ALFP_3596 9c0927641cf2bdc27ec558dcb3425632 362 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 353 70.936 T 12-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 ALFP_3596 9c0927641cf2bdc27ec558dcb3425632 362 Gene3D G3DSA:3.40.50.1970 1 171 1.8E-61 T 12-10-2018 ALFP_3596 9c0927641cf2bdc27ec558dcb3425632 362 PIRSF PIRSF001455 6 361 1.1E-108 T 12-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 ALFP_3596 9c0927641cf2bdc27ec558dcb3425632 362 SUPERFAMILY SSF56796 11 353 1.96E-114 T 12-10-2018 ALFP_3596 9c0927641cf2bdc27ec558dcb3425632 362 Gene3D G3DSA:1.20.1090.10 172 358 1.6E-64 T 12-10-2018 ALFP_2795 b2aaf5cfe4dde9bfa19cb34f2c953352 272 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 24 237 1.3E-16 T 12-10-2018 ALFP_0048 da7944643fe353589b943a39c08e9660 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 67 5.5E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0048 da7944643fe353589b943a39c08e9660 242 SMART SM00895 77 201 1.2E-14 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_0048 da7944643fe353589b943a39c08e9660 242 SMART SM00345 9 67 7.7E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0048 da7944643fe353589b943a39c08e9660 242 Gene3D G3DSA:1.20.120.530 71 214 4.8E-25 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_0048 da7944643fe353589b943a39c08e9660 242 SUPERFAMILY SSF48008 73 208 4.18E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_0048 da7944643fe353589b943a39c08e9660 242 Gene3D G3DSA:1.10.10.10 2 69 6.8E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0048 da7944643fe353589b943a39c08e9660 242 Pfam PF07729 FCD domain 77 199 5.5E-23 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_0048 da7944643fe353589b943a39c08e9660 242 SUPERFAMILY SSF46785 6 75 6.12E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1858 421b11e42d4a0c906f4617da7da85158 257 SUPERFAMILY SSF51182 27 200 1.16E-14 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_1858 421b11e42d4a0c906f4617da7da85158 257 SMART SM00342 168 250 5.3E-21 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1858 421b11e42d4a0c906f4617da7da85158 257 SUPERFAMILY SSF46689 204 252 1.75E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1858 421b11e42d4a0c906f4617da7da85158 257 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 205 246 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ALFP_1858 421b11e42d4a0c906f4617da7da85158 257 Gene3D G3DSA:2.60.120.10 19 90 1.3E-7 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_1858 421b11e42d4a0c906f4617da7da85158 257 Pfam PF12833 Helix-turn-helix domain 174 251 5.0E-21 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1858 421b11e42d4a0c906f4617da7da85158 257 Gene3D G3DSA:1.10.10.60 158 255 6.1E-21 T 12-10-2018 ALFP_1858 421b11e42d4a0c906f4617da7da85158 257 Pfam PF02311 AraC-like ligand binding domain 18 111 1.6E-11 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 ALFP_2235 f498f622da8328f2b11b6d463bde9863 82 Pfam PF01206 Sulfurtransferase TusA 13 74 6.2E-22 T 12-10-2018 IPR001455 TusA-like domain ALFP_2235 f498f622da8328f2b11b6d463bde9863 82 Gene3D G3DSA:3.30.110.40 4 82 1.4E-27 T 12-10-2018 IPR036868 TusA-like domain superfamily ALFP_2235 f498f622da8328f2b11b6d463bde9863 82 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 14 38 - T 12-10-2018 IPR001455 TusA-like domain ALFP_2235 f498f622da8328f2b11b6d463bde9863 82 SUPERFAMILY SSF64307 9 79 6.54E-22 T 12-10-2018 IPR036868 TusA-like domain superfamily ALFP_1210 bc5c51f8cd080afdd0b2d8fae2907692 571 SUPERFAMILY SSF64518 140 569 2.09E-27 T 12-10-2018 ALFP_1210 bc5c51f8cd080afdd0b2d8fae2907692 571 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 525 569 1.7E-5 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain ALFP_1210 bc5c51f8cd080afdd0b2d8fae2907692 571 Pfam PF00460 Flagella basal body rod protein 7 33 1.8E-4 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 ALFP_1210 bc5c51f8cd080afdd0b2d8fae2907692 571 PRINTS PR01005 Flagellar hook-associated protein signature 263 285 1.5E-35 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 ALFP_1210 bc5c51f8cd080afdd0b2d8fae2907692 571 PRINTS PR01005 Flagellar hook-associated protein signature 122 142 1.5E-35 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 ALFP_1210 bc5c51f8cd080afdd0b2d8fae2907692 571 PRINTS PR01005 Flagellar hook-associated protein signature 463 482 1.5E-35 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 ALFP_1210 bc5c51f8cd080afdd0b2d8fae2907692 571 PRINTS PR01005 Flagellar hook-associated protein signature 489 510 1.5E-35 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 ALFP_1210 bc5c51f8cd080afdd0b2d8fae2907692 571 PRINTS PR01005 Flagellar hook-associated protein signature 10 33 1.5E-35 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 ALFP_1210 bc5c51f8cd080afdd0b2d8fae2907692 571 PRINTS PR01005 Flagellar hook-associated protein signature 536 560 1.5E-35 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 ALFP_1210 bc5c51f8cd080afdd0b2d8fae2907692 571 PRINTS PR01005 Flagellar hook-associated protein signature 48 70 1.5E-35 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 ALFP_1210 bc5c51f8cd080afdd0b2d8fae2907692 571 PRINTS PR01005 Flagellar hook-associated protein signature 155 179 1.5E-35 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 ALFP_1210 bc5c51f8cd080afdd0b2d8fae2907692 571 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 3 332 8.6E-78 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 ALFP_1394 cf69cca03008cafa5404489ad0cc0905 209 PIRSF PIRSF001296 1 205 2.5E-68 T 12-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 ALFP_1394 cf69cca03008cafa5404489ad0cc0905 209 Pfam PF02669 K+-transporting ATPase, c chain 6 199 2.5E-66 T 12-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 ALFP_1394 cf69cca03008cafa5404489ad0cc0905 209 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 2 201 31.802 T 12-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 ALFP_1394 cf69cca03008cafa5404489ad0cc0905 209 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 5 199 5.0E-63 T 12-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 ALFP_0292 1d1381967c08b24d1dd8ffd0e6a989c6 228 SUPERFAMILY SSF56214 6 96 9.07E-17 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 ALFP_0292 1d1381967c08b24d1dd8ffd0e6a989c6 228 SUPERFAMILY SSF56214 104 214 1.15E-15 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 ALFP_0292 1d1381967c08b24d1dd8ffd0e6a989c6 228 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 104 201 1.2E-8 T 12-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 ALFP_0292 1d1381967c08b24d1dd8ffd0e6a989c6 228 Gene3D G3DSA:3.90.470.20 104 202 7.2E-31 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 ALFP_0292 1d1381967c08b24d1dd8ffd0e6a989c6 228 Gene3D G3DSA:3.90.470.20 19 214 7.2E-31 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 ALFP_2619 af6a74708ebf28c1bc2876529794935e 101 SMART SM00886 2 96 1.9E-13 T 12-10-2018 IPR013097 Stress responsive alpha-beta barrel ALFP_2619 af6a74708ebf28c1bc2876529794935e 101 Gene3D G3DSA:3.30.70.100 1 97 1.0E-19 T 12-10-2018 ALFP_2619 af6a74708ebf28c1bc2876529794935e 101 SUPERFAMILY SSF54909 1 96 3.35E-16 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel ALFP_2619 af6a74708ebf28c1bc2876529794935e 101 Pfam PF07876 Stress responsive A/B Barrel Domain 4 94 8.3E-13 T 12-10-2018 IPR013097 Stress responsive alpha-beta barrel ALFP_3434 3c4567a9115236fbf5842049e5fca818 263 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 9 262 9.8E-108 T 12-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 ALFP_3434 3c4567a9115236fbf5842049e5fca818 263 Pfam PF00977 Histidine biosynthesis protein 12 245 2.8E-87 T 12-10-2018 IPR006062 Histidine biosynthesis GO:0000105 ALFP_3434 3c4567a9115236fbf5842049e5fca818 263 Gene3D G3DSA:3.20.20.70 8 263 3.0E-106 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_3434 3c4567a9115236fbf5842049e5fca818 263 SUPERFAMILY SSF51366 10 262 5.02E-81 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 ALFP_3434 3c4567a9115236fbf5842049e5fca818 263 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 8 262 47.057 T 12-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 ALFP_3608 8477a5e266d851b6f96acb2c75b66e25 641 Gene3D G3DSA:2.60.40.1250 35 163 1.9E-36 T 12-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily ALFP_3608 8477a5e266d851b6f96acb2c75b66e25 641 Pfam PF13899 Thioredoxin-like 531 610 7.2E-10 T 12-10-2018 ALFP_3608 8477a5e266d851b6f96acb2c75b66e25 641 Pfam PF11412 Disulphide bond corrector protein DsbC 40 156 7.1E-31 T 12-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain ALFP_3608 8477a5e266d851b6f96acb2c75b66e25 641 Gene3D G3DSA:3.40.30.10 515 637 9.1E-31 T 12-10-2018 ALFP_3608 8477a5e266d851b6f96acb2c75b66e25 641 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 230 431 1.6E-21 T 12-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 ALFP_3608 8477a5e266d851b6f96acb2c75b66e25 641 SUPERFAMILY SSF74863 38 156 3.79E-30 T 12-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily ALFP_3608 8477a5e266d851b6f96acb2c75b66e25 641 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 12 638 32.271 T 12-10-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 ALFP_3608 8477a5e266d851b6f96acb2c75b66e25 641 SUPERFAMILY SSF52833 523 635 1.11E-20 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_2304 1f9b1d35c2005f1fea5ea3542fe622b6 213 SUPERFAMILY SSF52833 4 210 2.39E-70 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_2304 1f9b1d35c2005f1fea5ea3542fe622b6 213 Pfam PF00578 AhpC/TSA family 7 136 2.4E-33 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 ALFP_2304 1f9b1d35c2005f1fea5ea3542fe622b6 213 Gene3D G3DSA:3.40.30.10 2 146 1.0E-51 T 12-10-2018 ALFP_2304 1f9b1d35c2005f1fea5ea3542fe622b6 213 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 157 189 3.3E-10 T 12-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 ALFP_2304 1f9b1d35c2005f1fea5ea3542fe622b6 213 Gene3D G3DSA:3.30.1020.10 147 211 6.4E-27 T 12-10-2018 ALFP_2304 1f9b1d35c2005f1fea5ea3542fe622b6 213 PIRSF PIRSF000239 1 210 1.8E-78 T 12-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 ALFP_2891 b17dc377da2d440f44407a17eb816ac4 168 SUPERFAMILY SSF142433 5 164 4.32E-54 T 12-10-2018 IPR036653 CinA-like, C-terminal ALFP_2891 b17dc377da2d440f44407a17eb816ac4 168 Pfam PF02464 Competence-damaged protein 12 164 9.8E-56 T 12-10-2018 IPR008136 CinA, C-terminal ALFP_2891 b17dc377da2d440f44407a17eb816ac4 168 Gene3D G3DSA:3.90.950.20 2 166 3.0E-58 T 12-10-2018 IPR036653 CinA-like, C-terminal ALFP_2891 b17dc377da2d440f44407a17eb816ac4 168 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 13 165 6.7E-49 T 12-10-2018 IPR008136 CinA, C-terminal ALFP_1027 fd63002ee20086c66b4e4c5c3cfdb605 96 SUPERFAMILY SSF55729 9 95 2.85E-26 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_1027 fd63002ee20086c66b4e4c5c3cfdb605 96 Pfam PF14542 GCN5-related N-acetyl-transferase 19 94 9.7E-26 T 12-10-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase ALFP_1027 fd63002ee20086c66b4e4c5c3cfdb605 96 Gene3D G3DSA:3.40.630.30 7 96 9.7E-27 T 12-10-2018 ALFP_1208 1cd1c0420ea335fce6c5b23701fbc6ac 380 Pfam PF02119 Flagellar P-ring protein 36 379 3.4E-136 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 ALFP_1208 1cd1c0420ea335fce6c5b23701fbc6ac 380 Hamap MF_00416 Flagellar P-ring protein [flgI]. 16 380 37.988 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 ALFP_1208 1cd1c0420ea335fce6c5b23701fbc6ac 380 PRINTS PR01010 Flagellar P-ring protein signature 119 136 3.3E-82 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 ALFP_1208 1cd1c0420ea335fce6c5b23701fbc6ac 380 PRINTS PR01010 Flagellar P-ring protein signature 136 154 3.3E-82 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 ALFP_1208 1cd1c0420ea335fce6c5b23701fbc6ac 380 PRINTS PR01010 Flagellar P-ring protein signature 266 278 3.3E-82 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 ALFP_1208 1cd1c0420ea335fce6c5b23701fbc6ac 380 PRINTS PR01010 Flagellar P-ring protein signature 97 116 3.3E-82 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 ALFP_1208 1cd1c0420ea335fce6c5b23701fbc6ac 380 PRINTS PR01010 Flagellar P-ring protein signature 202 220 3.3E-82 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 ALFP_1208 1cd1c0420ea335fce6c5b23701fbc6ac 380 PRINTS PR01010 Flagellar P-ring protein signature 36 51 3.3E-82 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 ALFP_1208 1cd1c0420ea335fce6c5b23701fbc6ac 380 PRINTS PR01010 Flagellar P-ring protein signature 71 86 3.3E-82 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 ALFP_1208 1cd1c0420ea335fce6c5b23701fbc6ac 380 PRINTS PR01010 Flagellar P-ring protein signature 176 194 3.3E-82 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 ALFP_1208 1cd1c0420ea335fce6c5b23701fbc6ac 380 PRINTS PR01010 Flagellar P-ring protein signature 51 66 3.3E-82 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 ALFP_2532 245757b1170d8766e64f145f455689b8 46 SUPERFAMILY SSF57829 1 41 1.65E-11 T 12-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 ALFP_2532 245757b1170d8766e64f145f455689b8 46 Pfam PF01783 Ribosomal L32p protein family 1 41 4.2E-12 T 12-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2532 245757b1170d8766e64f145f455689b8 46 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 1 41 1.3E-12 T 12-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_0634 0db784d998bb833a72f33743a3e22433 216 Pfam PF00484 Carbonic anhydrase 34 188 7.6E-50 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 ALFP_0634 0db784d998bb833a72f33743a3e22433 216 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 39 46 - T 12-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 ALFP_0634 0db784d998bb833a72f33743a3e22433 216 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 12-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 ALFP_0634 0db784d998bb833a72f33743a3e22433 216 SUPERFAMILY SSF53056 1 201 1.2E-64 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 ALFP_0634 0db784d998bb833a72f33743a3e22433 216 SMART SM00947 27 193 5.7E-66 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 ALFP_0634 0db784d998bb833a72f33743a3e22433 216 Gene3D G3DSA:3.40.1050.10 1 202 1.1E-69 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 ALFP_1182 3b7fe666ffc2ac53b504e0e594110c00 216 PIRSF PIRSF003159 1 188 1.6E-76 T 12-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 ALFP_1182 3b7fe666ffc2ac53b504e0e594110c00 216 SUPERFAMILY SSF160930 6 166 7.19E-57 T 12-10-2018 ALFP_1182 3b7fe666ffc2ac53b504e0e594110c00 216 Hamap MF_01891 Flagellar transcriptional regulator FlhC [flhC]. 1 205 43.811 T 12-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 ALFP_1182 3b7fe666ffc2ac53b504e0e594110c00 216 Pfam PF05280 Flagellar transcriptional activator (FlhC) 1 178 9.7E-79 T 12-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 ALFP_1182 3b7fe666ffc2ac53b504e0e594110c00 216 ProDom PD016592 ACTIVATOR TRANSCRIPTIONAL FLAGELLUM FLAGELLAR TRANSCRIPTION FLHC RNA DNA-BINDING REGULATION DNA-DIRECTED 1 174 3.0E-70 T 12-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 ALFP_1746 ec575688aa9069d13b1f3f1cd7fa843a 383 Gene3D G3DSA:1.10.443.10 173 375 2.5E-22 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 ALFP_1746 ec575688aa9069d13b1f3f1cd7fa843a 383 Gene3D G3DSA:1.10.150.130 62 166 4.4E-7 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal ALFP_1746 ec575688aa9069d13b1f3f1cd7fa843a 383 SUPERFAMILY SSF56349 63 360 5.59E-36 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 ALFP_1746 ec575688aa9069d13b1f3f1cd7fa843a 383 Pfam PF00589 Phage integrase family 187 352 4.9E-13 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 ALFP_1479 722441853d8fd6e1507afd674a9bdb03 673 SUPERFAMILY SSF52540 15 424 5.02E-134 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1479 722441853d8fd6e1507afd674a9bdb03 673 Gene3D G3DSA:3.40.50.300 283 423 2.1E-50 T 12-10-2018 ALFP_1479 722441853d8fd6e1507afd674a9bdb03 673 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 15 667 0.0 T 12-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 ALFP_1479 722441853d8fd6e1507afd674a9bdb03 673 SUPERFAMILY SSF46600 628 668 2.22E-9 T 12-10-2018 IPR036876 UVR domain superfamily ALFP_1479 722441853d8fd6e1507afd674a9bdb03 673 Gene3D G3DSA:3.40.50.300 6 245 2.9E-69 T 12-10-2018 ALFP_1479 722441853d8fd6e1507afd674a9bdb03 673 Pfam PF00271 Helicase conserved C-terminal domain 451 553 1.0E-17 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_1479 722441853d8fd6e1507afd674a9bdb03 673 SMART SM00487 19 435 3.6E-29 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain ALFP_1479 722441853d8fd6e1507afd674a9bdb03 673 Hamap MF_00204 UvrABC system protein B [uvrB]. 13 669 43.295 T 12-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 ALFP_1479 722441853d8fd6e1507afd674a9bdb03 673 Gene3D G3DSA:4.10.860.10 618 673 8.0E-16 T 12-10-2018 ALFP_1479 722441853d8fd6e1507afd674a9bdb03 673 Pfam PF04851 Type III restriction enzyme, res subunit 27 132 1.1E-7 T 12-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 ALFP_1479 722441853d8fd6e1507afd674a9bdb03 673 Pfam PF02151 UvrB/uvrC motif 635 668 2.2E-5 T 12-10-2018 IPR001943 UVR domain GO:0005515 ALFP_1479 722441853d8fd6e1507afd674a9bdb03 673 Gene3D G3DSA:3.40.50.300 424 598 4.1E-51 T 12-10-2018 ALFP_1479 722441853d8fd6e1507afd674a9bdb03 673 SMART SM00490 469 555 1.7E-20 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_1479 722441853d8fd6e1507afd674a9bdb03 673 Pfam PF12344 Ultra-violet resistance protein B 561 603 1.6E-23 T 12-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain ALFP_1479 722441853d8fd6e1507afd674a9bdb03 673 SUPERFAMILY SSF52540 47 593 1.73E-37 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3104 c905a403f06d9246ceecca4bf9e8d0b1 449 SUPERFAMILY SSF51246 331 443 4.34E-44 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 ALFP_3104 c905a403f06d9246ceecca4bf9e8d0b1 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 446 6.0E-221 T 12-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 ALFP_3104 c905a403f06d9246ceecca4bf9e8d0b1 449 SMART SM00878 336 441 1.9E-67 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 ALFP_3104 c905a403f06d9246ceecca4bf9e8d0b1 449 Gene3D G3DSA:3.30.470.20 87 433 1.0E-151 T 12-10-2018 ALFP_3104 c905a403f06d9246ceecca4bf9e8d0b1 449 Gene3D G3DSA:3.30.1490.20 131 203 1.0E-151 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 ALFP_3104 c905a403f06d9246ceecca4bf9e8d0b1 449 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ALFP_3104 c905a403f06d9246ceecca4bf9e8d0b1 449 Pfam PF02785 Biotin carboxylase C-terminal domain 336 442 5.0E-40 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 ALFP_3104 c905a403f06d9246ceecca4bf9e8d0b1 449 SUPERFAMILY SSF56059 84 346 1.1E-68 T 12-10-2018 ALFP_3104 c905a403f06d9246ceecca4bf9e8d0b1 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ALFP_3104 c905a403f06d9246ceecca4bf9e8d0b1 449 Gene3D G3DSA:3.40.50.20 1 85 1.8E-34 T 12-10-2018 ALFP_3104 c905a403f06d9246ceecca4bf9e8d0b1 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 321 9.3E-78 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ALFP_3104 c905a403f06d9246ceecca4bf9e8d0b1 449 SUPERFAMILY SSF52440 1 113 7.05E-48 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily ALFP_3104 c905a403f06d9246ceecca4bf9e8d0b1 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 4.3E-45 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 ALFP_1843 0a91f699acc4f38e2d0ad33903ab690d 260 Gene3D G3DSA:3.40.50.720 2 259 1.1E-63 T 12-10-2018 ALFP_1843 0a91f699acc4f38e2d0ad33903ab690d 260 SUPERFAMILY SSF51735 12 256 1.88E-65 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1843 0a91f699acc4f38e2d0ad33903ab690d 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 256 3.7E-52 T 12-10-2018 ALFP_1843 0a91f699acc4f38e2d0ad33903ab690d 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 3.9E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1843 0a91f699acc4f38e2d0ad33903ab690d 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 3.9E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1843 0a91f699acc4f38e2d0ad33903ab690d 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 3.9E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1843 0a91f699acc4f38e2d0ad33903ab690d 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 3.9E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1843 0a91f699acc4f38e2d0ad33903ab690d 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 3.9E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0741 bb6ba82c21d1a1f9df0e03b03d0c8f03 273 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 200 1.7E-12 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 ALFP_0741 bb6ba82c21d1a1f9df0e03b03d0c8f03 273 Gene3D G3DSA:3.40.50.720 1 272 1.1E-72 T 12-10-2018 ALFP_0741 bb6ba82c21d1a1f9df0e03b03d0c8f03 273 SUPERFAMILY SSF51735 5 260 1.98E-29 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3284 0c27e8cc5c13ee1b09afe679b98fe7cb 286 Pfam PF00535 Glycosyl transferase family 2 13 115 2.2E-14 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 ALFP_3284 0c27e8cc5c13ee1b09afe679b98fe7cb 286 Gene3D G3DSA:3.90.550.10 2 235 2.6E-34 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_3284 0c27e8cc5c13ee1b09afe679b98fe7cb 286 SUPERFAMILY SSF53448 11 271 1.88E-39 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_3656 8369467cd3f7f3aed83caa0e8d9645b0 91 ProSitePatterns PS00056 Ribosomal protein S17 signature. 62 74 - T 12-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3656 8369467cd3f7f3aed83caa0e8d9645b0 91 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 11 86 24.525 T 12-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3656 8369467cd3f7f3aed83caa0e8d9645b0 91 Pfam PF00366 Ribosomal protein S17 16 82 2.7E-31 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3656 8369467cd3f7f3aed83caa0e8d9645b0 91 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 12 82 2.1E-35 T 12-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3656 8369467cd3f7f3aed83caa0e8d9645b0 91 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 11 82 5.0E-32 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3656 8369467cd3f7f3aed83caa0e8d9645b0 91 SUPERFAMILY SSF50249 10 89 3.86E-31 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_3656 8369467cd3f7f3aed83caa0e8d9645b0 91 Gene3D G3DSA:2.40.50.140 7 89 6.0E-34 T 12-10-2018 ALFP_3656 8369467cd3f7f3aed83caa0e8d9645b0 91 PRINTS PR00973 Ribosomal protein S17 family signature 30 53 5.2E-11 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3656 8369467cd3f7f3aed83caa0e8d9645b0 91 PRINTS PR00973 Ribosomal protein S17 family signature 62 72 5.2E-11 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3656 8369467cd3f7f3aed83caa0e8d9645b0 91 PRINTS PR00973 Ribosomal protein S17 family signature 72 79 5.2E-11 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_0736 f8613a4c897b40e7da0e3d208b49523c 155 SUPERFAMILY SSF52038 39 122 2.75E-16 T 12-10-2018 IPR035905 Barstar-like superfamily ALFP_0736 f8613a4c897b40e7da0e3d208b49523c 155 Gene3D G3DSA:3.30.370.10 36 126 1.0E-8 T 12-10-2018 IPR035905 Barstar-like superfamily ALFP_0736 f8613a4c897b40e7da0e3d208b49523c 155 Pfam PF01337 Barstar (barnase inhibitor) 41 118 9.0E-20 T 12-10-2018 IPR000468 Barstar (barnase inhibitor) ALFP_2438 c3ecd2fe0c6b39971a11b838d1848d72 341 Gene3D G3DSA:3.40.190.80 204 340 2.7E-54 T 12-10-2018 ALFP_2438 c3ecd2fe0c6b39971a11b838d1848d72 341 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 11 201 4.1E-58 T 12-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 ALFP_2438 c3ecd2fe0c6b39971a11b838d1848d72 341 PIRSF PIRSF000904 5 341 4.9E-123 T 12-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 ALFP_2438 c3ecd2fe0c6b39971a11b838d1848d72 341 Gene3D G3DSA:3.30.540.10 4 203 5.8E-64 T 12-10-2018 ALFP_2438 c3ecd2fe0c6b39971a11b838d1848d72 341 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 9 340 45.495 T 12-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 ALFP_2438 c3ecd2fe0c6b39971a11b838d1848d72 341 PIRSF PIRSF500210 5 341 3.6E-125 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 ALFP_2438 c3ecd2fe0c6b39971a11b838d1848d72 341 SUPERFAMILY SSF56655 9 338 3.0E-112 T 12-10-2018 ALFP_2438 c3ecd2fe0c6b39971a11b838d1848d72 341 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 71 97 2.8E-70 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 ALFP_2438 c3ecd2fe0c6b39971a11b838d1848d72 341 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 314 339 2.8E-70 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 ALFP_2438 c3ecd2fe0c6b39971a11b838d1848d72 341 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 212 239 2.8E-70 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 ALFP_2438 c3ecd2fe0c6b39971a11b838d1848d72 341 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 155 178 2.8E-70 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 ALFP_2438 c3ecd2fe0c6b39971a11b838d1848d72 341 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 186 209 2.8E-70 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 ALFP_2438 c3ecd2fe0c6b39971a11b838d1848d72 341 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 34 61 2.8E-70 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 ALFP_2451 cee2ee0ac39c9c0e29e55be75ad64db0 257 Gene3D G3DSA:3.40.30.10 111 254 1.4E-34 T 12-10-2018 ALFP_2451 cee2ee0ac39c9c0e29e55be75ad64db0 257 Gene3D G3DSA:3.10.450.70 27 96 4.5E-24 T 12-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 ALFP_2451 cee2ee0ac39c9c0e29e55be75ad64db0 257 SUPERFAMILY SSF52833 95 247 1.1E-30 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_2451 cee2ee0ac39c9c0e29e55be75ad64db0 257 SUPERFAMILY SSF54423 27 85 1.44E-14 T 12-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 ALFP_2451 cee2ee0ac39c9c0e29e55be75ad64db0 257 Pfam PF13098 Thioredoxin-like domain 122 247 1.3E-13 T 12-10-2018 IPR012336 Thioredoxin-like fold ALFP_2017 3b8efc5d81ae1d0d05ad33e1310edfb2 746 Gene3D G3DSA:3.30.70.260 669 746 2.3E-10 T 12-10-2018 ALFP_2017 3b8efc5d81ae1d0d05ad33e1310edfb2 746 SMART SM00471 75 187 1.4E-10 T 12-10-2018 IPR003607 HD/PDEase domain ALFP_2017 3b8efc5d81ae1d0d05ad33e1310edfb2 746 Gene3D G3DSA:1.10.3210.10 36 224 7.9E-78 T 12-10-2018 ALFP_2017 3b8efc5d81ae1d0d05ad33e1310edfb2 746 SUPERFAMILY SSF55021 671 743 9.62E-7 T 12-10-2018 ALFP_2017 3b8efc5d81ae1d0d05ad33e1310edfb2 746 Gene3D G3DSA:3.10.20.30 415 489 7.8E-30 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_2017 3b8efc5d81ae1d0d05ad33e1310edfb2 746 Pfam PF02824 TGS domain 422 481 1.4E-19 T 12-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 ALFP_2017 3b8efc5d81ae1d0d05ad33e1310edfb2 746 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 60 741 1.7E-221 T 12-10-2018 IPR004811 RelA/SpoT family GO:0015969 ALFP_2017 3b8efc5d81ae1d0d05ad33e1310edfb2 746 Pfam PF13291 ACT domain 670 743 2.0E-15 T 12-10-2018 IPR002912 ACT domain ALFP_2017 3b8efc5d81ae1d0d05ad33e1310edfb2 746 SMART SM00954 269 379 4.9E-58 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 ALFP_2017 3b8efc5d81ae1d0d05ad33e1310edfb2 746 Pfam PF13328 HD domain 60 209 4.4E-50 T 12-10-2018 IPR003607 HD/PDEase domain ALFP_2017 3b8efc5d81ae1d0d05ad33e1310edfb2 746 Pfam PF04607 Region found in RelA / SpoT proteins 269 378 3.7E-31 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 ALFP_2017 3b8efc5d81ae1d0d05ad33e1310edfb2 746 Gene3D G3DSA:3.30.460.10 227 359 1.2E-41 T 12-10-2018 ALFP_2017 3b8efc5d81ae1d0d05ad33e1310edfb2 746 SUPERFAMILY SSF109604 40 224 1.13E-69 T 12-10-2018 ALFP_2017 3b8efc5d81ae1d0d05ad33e1310edfb2 746 SUPERFAMILY SSF81301 215 426 4.41E-58 T 12-10-2018 ALFP_2017 3b8efc5d81ae1d0d05ad33e1310edfb2 746 SUPERFAMILY SSF81271 409 482 1.11E-20 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 ALFP_3250 cc6bed22138cb1d63fb73427d3479609 257 SUPERFAMILY SSF69572 2 247 1.57E-85 T 12-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 ALFP_3250 cc6bed22138cb1d63fb73427d3479609 257 Pfam PF00899 ThiF family 9 243 1.3E-63 T 12-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 ALFP_3250 cc6bed22138cb1d63fb73427d3479609 257 Gene3D G3DSA:3.40.50.720 1 253 6.9E-90 T 12-10-2018 ALFP_2722 188a895be367f4fba867df913d829c46 501 SUPERFAMILY SSF56954 16 481 2.22E-112 T 12-10-2018 ALFP_2722 188a895be367f4fba867df913d829c46 501 Gene3D G3DSA:2.20.200.10 115 367 2.0E-136 T 12-10-2018 ALFP_2722 188a895be367f4fba867df913d829c46 501 Pfam PF02321 Outer membrane efflux protein 301 476 2.6E-27 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_2722 188a895be367f4fba867df913d829c46 501 Pfam PF02321 Outer membrane efflux protein 78 268 9.0E-26 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_2722 188a895be367f4fba867df913d829c46 501 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 25 478 6.1E-119 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 ALFP_2722 188a895be367f4fba867df913d829c46 501 Gene3D G3DSA:1.20.1600.10 69 478 2.0E-136 T 12-10-2018 ALFP_2726 35288bbda4871c4de0053a200ede30ed 243 Gene3D G3DSA:3.40.50.620 7 241 9.7E-63 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_2726 35288bbda4871c4de0053a200ede30ed 243 SUPERFAMILY SSF52402 9 232 2.65E-52 T 12-10-2018 ALFP_2726 35288bbda4871c4de0053a200ede30ed 243 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 8 239 47.837 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 ALFP_2726 35288bbda4871c4de0053a200ede30ed 243 PIRSF PIRSF006293 6 242 1.4E-65 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 ALFP_2726 35288bbda4871c4de0053a200ede30ed 243 Pfam PF06508 Queuosine biosynthesis protein QueC 9 233 2.4E-70 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 ALFP_2726 35288bbda4871c4de0053a200ede30ed 243 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 10 226 3.1E-58 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 ALFP_1357 bcb31ab3ace0ea70204f2cb0dc4ca7b5 454 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 24 441 21.897 T 12-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 ALFP_1357 bcb31ab3ace0ea70204f2cb0dc4ca7b5 454 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 28 434 5.5E-117 T 12-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 ALFP_1357 bcb31ab3ace0ea70204f2cb0dc4ca7b5 454 Pfam PF06965 Na+/H+ antiporter 1 26 433 5.9E-135 T 12-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 ALFP_1922 ddab34dd026d9196f4c5c8151ca5113a 362 Pfam PF11740 Plasmid replication region DNA-binding N-term 40 146 6.2E-18 T 12-10-2018 IPR021104 KfrA, N-terminal DNA-binding domain ALFP_0749 bc41b39393701adadaa9be6f4402f8b3 394 Gene3D G3DSA:3.40.50.20 9 116 1.0E-37 T 12-10-2018 ALFP_0749 bc41b39393701adadaa9be6f4402f8b3 394 SUPERFAMILY SSF56059 112 310 6.36E-56 T 12-10-2018 ALFP_0749 bc41b39393701adadaa9be6f4402f8b3 394 Gene3D G3DSA:3.30.1490.20 117 189 1.0E-22 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 ALFP_0749 bc41b39393701adadaa9be6f4402f8b3 394 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 16 373 39.899 T 12-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 ALFP_0749 bc41b39393701adadaa9be6f4402f8b3 394 Pfam PF02222 ATP-grasp domain 121 290 4.7E-47 T 12-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type ALFP_0749 bc41b39393701adadaa9be6f4402f8b3 394 Gene3D G3DSA:3.30.470.20 190 389 4.9E-76 T 12-10-2018 ALFP_0749 bc41b39393701adadaa9be6f4402f8b3 394 SUPERFAMILY SSF52440 11 109 2.01E-23 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily ALFP_0749 bc41b39393701adadaa9be6f4402f8b3 394 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 17 378 1.2E-114 T 12-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 ALFP_0749 bc41b39393701adadaa9be6f4402f8b3 394 SUPERFAMILY SSF51246 314 387 5.1E-17 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 ALFP_2981 782c83f52c61956d5ef37724b5e5e15c 618 PIRSF PIRSF036431 1 616 3.4E-164 T 12-10-2018 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) ALFP_2981 782c83f52c61956d5ef37724b5e5e15c 618 Gene3D G3DSA:3.30.450.20 193 299 1.1E-25 T 12-10-2018 ALFP_2981 782c83f52c61956d5ef37724b5e5e15c 618 SUPERFAMILY SSF47384 384 458 9.81E-11 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_2981 782c83f52c61956d5ef37724b5e5e15c 618 SMART SM00387 502 610 1.1E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2981 782c83f52c61956d5ef37724b5e5e15c 618 SUPERFAMILY SSF103190 95 202 3.14E-13 T 12-10-2018 IPR029151 Periplasmic sensor-like domain superfamily ALFP_2981 782c83f52c61956d5ef37724b5e5e15c 618 PRINTS PR00344 Bacterial sensor protein C-terminal signature 559 569 5.3E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2981 782c83f52c61956d5ef37724b5e5e15c 618 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 555 5.3E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2981 782c83f52c61956d5ef37724b5e5e15c 618 PRINTS PR00344 Bacterial sensor protein C-terminal signature 570 588 5.3E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2981 782c83f52c61956d5ef37724b5e5e15c 618 SMART SM00388 392 460 1.5E-8 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_2981 782c83f52c61956d5ef37724b5e5e15c 618 Gene3D G3DSA:3.30.450.20 68 190 3.4E-34 T 12-10-2018 ALFP_2981 782c83f52c61956d5ef37724b5e5e15c 618 Gene3D G3DSA:1.10.287.130 364 454 3.9E-18 T 12-10-2018 ALFP_2981 782c83f52c61956d5ef37724b5e5e15c 618 Pfam PF00512 His Kinase A (phospho-acceptor) domain 393 457 3.9E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_2981 782c83f52c61956d5ef37724b5e5e15c 618 Pfam PF02743 Cache domain 46 289 1.1E-14 T 12-10-2018 IPR033479 Double Cache domain 1 ALFP_2981 782c83f52c61956d5ef37724b5e5e15c 618 Gene3D G3DSA:3.30.565.10 459 614 4.3E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_2981 782c83f52c61956d5ef37724b5e5e15c 618 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 505 607 2.3E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2981 782c83f52c61956d5ef37724b5e5e15c 618 SUPERFAMILY SSF55874 464 606 5.89E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_0706 632a3fe2882a0a51a5544a77eb7f7252 255 Gene3D G3DSA:3.90.230.10 1 255 7.2E-92 T 12-10-2018 ALFP_0706 632a3fe2882a0a51a5544a77eb7f7252 255 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 165 183 - T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 ALFP_0706 632a3fe2882a0a51a5544a77eb7f7252 255 PRINTS PR00599 Methionine aminopeptidase-1 signature 159 171 1.3E-18 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 ALFP_0706 632a3fe2882a0a51a5544a77eb7f7252 255 PRINTS PR00599 Methionine aminopeptidase-1 signature 190 202 1.3E-18 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 ALFP_0706 632a3fe2882a0a51a5544a77eb7f7252 255 PRINTS PR00599 Methionine aminopeptidase-1 signature 66 79 1.3E-18 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 ALFP_0706 632a3fe2882a0a51a5544a77eb7f7252 255 PRINTS PR00599 Methionine aminopeptidase-1 signature 89 105 1.3E-18 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 ALFP_0706 632a3fe2882a0a51a5544a77eb7f7252 255 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 2 247 9.1E-84 T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 ALFP_0706 632a3fe2882a0a51a5544a77eb7f7252 255 Pfam PF00557 Metallopeptidase family M24 10 239 3.9E-47 T 12-10-2018 IPR000994 Peptidase M24 ALFP_0706 632a3fe2882a0a51a5544a77eb7f7252 255 SUPERFAMILY SSF55920 1 253 7.59E-81 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like ALFP_0706 632a3fe2882a0a51a5544a77eb7f7252 255 Hamap MF_01974 Methionine aminopeptidase [map]. 1 248 35.325 T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 ALFP_3022 795b45e9337b1e14de07941f7ac54406 292 Pfam PF03466 LysR substrate binding domain 89 283 9.8E-28 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_3022 795b45e9337b1e14de07941f7ac54406 292 SUPERFAMILY SSF53850 93 286 2.71E-30 T 12-10-2018 ALFP_3022 795b45e9337b1e14de07941f7ac54406 292 SUPERFAMILY SSF46785 5 89 1.52E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3022 795b45e9337b1e14de07941f7ac54406 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.4E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3022 795b45e9337b1e14de07941f7ac54406 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 6.0E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3022 795b45e9337b1e14de07941f7ac54406 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 6.0E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3022 795b45e9337b1e14de07941f7ac54406 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 6.0E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3022 795b45e9337b1e14de07941f7ac54406 292 Gene3D G3DSA:3.40.190.10 162 254 4.4E-45 T 12-10-2018 ALFP_3022 795b45e9337b1e14de07941f7ac54406 292 Gene3D G3DSA:3.40.190.10 98 279 4.4E-45 T 12-10-2018 ALFP_3022 795b45e9337b1e14de07941f7ac54406 292 Gene3D G3DSA:1.10.10.10 4 93 3.5E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2484 d5821dc7e500f439542ad19300ae7bce 303 Gene3D G3DSA:3.55.30.10 1 179 2.8E-52 T 12-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 ALFP_2484 d5821dc7e500f439542ad19300ae7bce 303 Pfam PF01430 Hsp33 protein 3 281 9.8E-79 T 12-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 ALFP_2484 d5821dc7e500f439542ad19300ae7bce 303 SUPERFAMILY SSF64397 3 240 1.28E-57 T 12-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 ALFP_2484 d5821dc7e500f439542ad19300ae7bce 303 Gene3D G3DSA:3.90.1280.10 234 292 1.1E-20 T 12-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 ALFP_2484 d5821dc7e500f439542ad19300ae7bce 303 Gene3D G3DSA:1.10.287.480 187 233 1.1E-12 T 12-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily ALFP_2484 d5821dc7e500f439542ad19300ae7bce 303 SUPERFAMILY SSF118352 233 289 2.09E-18 T 12-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 ALFP_2484 d5821dc7e500f439542ad19300ae7bce 303 PIRSF PIRSF005261 2 292 5.4E-68 T 12-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 ALFP_0806 af3accf6afa5827b8ebda3c8c14333f6 399 SUPERFAMILY SSF53187 2 396 1.46E-91 T 12-10-2018 ALFP_0806 af3accf6afa5827b8ebda3c8c14333f6 399 Gene3D G3DSA:3.40.630.10 16 378 1.1E-140 T 12-10-2018 ALFP_0806 af3accf6afa5827b8ebda3c8c14333f6 399 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 15 382 5.4E-114 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 ALFP_0806 af3accf6afa5827b8ebda3c8c14333f6 399 Pfam PF01546 Peptidase family M20/M25/M40 74 356 2.1E-35 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 ALFP_0806 af3accf6afa5827b8ebda3c8c14333f6 399 Pfam PF07687 Peptidase dimerisation domain 186 281 1.9E-15 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain ALFP_0806 af3accf6afa5827b8ebda3c8c14333f6 399 PIRSF PIRSF005962 2 399 1.4E-135 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 ALFP_0806 af3accf6afa5827b8ebda3c8c14333f6 399 SUPERFAMILY SSF55031 184 297 5.0E-35 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain ALFP_0806 af3accf6afa5827b8ebda3c8c14333f6 399 Gene3D G3DSA:3.30.70.360 182 296 1.1E-140 T 12-10-2018 ALFP_2666 1ce763e05389132068ea70d535d5a7c4 415 SUPERFAMILY SSF56796 4 406 1.83E-96 T 12-10-2018 ALFP_2666 1ce763e05389132068ea70d535d5a7c4 415 Gene3D G3DSA:1.20.1090.10 192 407 1.3E-47 T 12-10-2018 ALFP_2666 1ce763e05389132068ea70d535d5a7c4 415 Gene3D G3DSA:3.40.50.1970 1 190 1.1E-49 T 12-10-2018 ALFP_2666 1ce763e05389132068ea70d535d5a7c4 415 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 389 3.5E-96 T 12-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 ALFP_2335 0447cbd543359ad3cc34e06c146da50a 691 SUPERFAMILY SSF56634 26 529 1.2E-216 T 12-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_2335 0447cbd543359ad3cc34e06c146da50a 691 PRINTS PR00067 Catalase signature 43 66 7.1E-68 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_2335 0447cbd543359ad3cc34e06c146da50a 691 PRINTS PR00067 Catalase signature 315 342 7.1E-68 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_2335 0447cbd543359ad3cc34e06c146da50a 691 PRINTS PR00067 Catalase signature 347 373 7.1E-68 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_2335 0447cbd543359ad3cc34e06c146da50a 691 PRINTS PR00067 Catalase signature 106 124 7.1E-68 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_2335 0447cbd543359ad3cc34e06c146da50a 691 PRINTS PR00067 Catalase signature 146 164 7.1E-68 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_2335 0447cbd543359ad3cc34e06c146da50a 691 PRINTS PR00067 Catalase signature 127 144 7.1E-68 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_2335 0447cbd543359ad3cc34e06c146da50a 691 ProSitePatterns PS00438 Catalase proximal active site signature. 66 82 - T 12-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_2335 0447cbd543359ad3cc34e06c146da50a 691 SMART SM01060 30 418 7.6E-268 T 12-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_2335 0447cbd543359ad3cc34e06c146da50a 691 Gene3D G3DSA:2.40.180.10 2 441 1.0E-199 T 12-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 ALFP_2335 0447cbd543359ad3cc34e06c146da50a 691 Gene3D G3DSA:3.40.50.880 545 690 2.7E-27 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_2335 0447cbd543359ad3cc34e06c146da50a 691 Pfam PF06628 Catalase-related immune-responsive 448 511 2.8E-20 T 12-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_2335 0447cbd543359ad3cc34e06c146da50a 691 SUPERFAMILY SSF52317 546 689 3.74E-13 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_2335 0447cbd543359ad3cc34e06c146da50a 691 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 360 368 - T 12-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_2335 0447cbd543359ad3cc34e06c146da50a 691 Pfam PF00199 Catalase 30 415 2.2E-178 T 12-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 ALFP_2335 0447cbd543359ad3cc34e06c146da50a 691 PIRSF PIRSF038927 3 689 7.1E-296 T 12-10-2018 IPR024712 Catalase, mono-functional, haem-containing, clade 2 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 ALFP_2335 0447cbd543359ad3cc34e06c146da50a 691 Gene3D G3DSA:1.20.1370.20 445 543 1.1E-28 T 12-10-2018 ALFP_2946 fc91dd9237c1f55bcbee5f31c4f71b6f 365 Gene3D G3DSA:3.40.190.170 34 338 8.8E-125 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_2946 fc91dd9237c1f55bcbee5f31c4f71b6f 365 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 40 321 2.0E-56 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_2946 fc91dd9237c1f55bcbee5f31c4f71b6f 365 PIRSF PIRSF039026 1 357 4.8E-114 T 12-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like ALFP_2946 fc91dd9237c1f55bcbee5f31c4f71b6f 365 Gene3D G3DSA:3.40.190.10 154 325 8.8E-125 T 12-10-2018 ALFP_1354 735882ffb2b9970e24c69f38d077befb 446 SUPERFAMILY SSF161093 263 441 1.28E-47 T 12-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 ALFP_1354 735882ffb2b9970e24c69f38d077befb 446 SUPERFAMILY SSF54631 116 256 5.81E-25 T 12-10-2018 ALFP_1354 735882ffb2b9970e24c69f38d077befb 446 Gene3D G3DSA:1.10.357.20 256 442 2.1E-57 T 12-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain ALFP_1354 735882ffb2b9970e24c69f38d077befb 446 Gene3D G3DSA:3.10.580.10 114 242 8.5E-38 T 12-10-2018 ALFP_1354 735882ffb2b9970e24c69f38d077befb 446 SMART SM00924 14 117 2.4E-12 T 12-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain ALFP_1354 735882ffb2b9970e24c69f38d077befb 446 Pfam PF03448 MgtE intracellular N domain 16 115 3.4E-12 T 12-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain ALFP_1354 735882ffb2b9970e24c69f38d077befb 446 SUPERFAMILY SSF158791 15 113 3.4E-13 T 12-10-2018 ALFP_1354 735882ffb2b9970e24c69f38d077befb 446 SMART SM00116 189 237 3.8E-7 T 12-10-2018 IPR000644 CBS domain ALFP_1354 735882ffb2b9970e24c69f38d077befb 446 TIGRFAM TIGR00400 mgtE: magnesium transporter 17 442 4.2E-106 T 12-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 ALFP_1354 735882ffb2b9970e24c69f38d077befb 446 Pfam PF00571 CBS domain 199 237 4.0E-7 T 12-10-2018 IPR000644 CBS domain ALFP_1354 735882ffb2b9970e24c69f38d077befb 446 Gene3D G3DSA:1.25.60.10 14 112 3.4E-7 T 12-10-2018 IPR038076 MgtE, N-terminal domain superfamily ALFP_1354 735882ffb2b9970e24c69f38d077befb 446 Pfam PF01769 Divalent cation transporter 304 434 8.8E-30 T 12-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 ALFP_2252 72ef3bd8be6ae83f5100451d8a0c93c8 418 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 8.0E-16 T 12-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 ALFP_2252 72ef3bd8be6ae83f5100451d8a0c93c8 418 SMART SM00382 170 349 2.9E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2252 72ef3bd8be6ae83f5100451d8a0c93c8 418 Gene3D G3DSA:3.40.50.300 130 417 3.0E-127 T 12-10-2018 ALFP_2252 72ef3bd8be6ae83f5100451d8a0c93c8 418 SUPERFAMILY SSF52540 90 371 1.62E-67 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2252 72ef3bd8be6ae83f5100451d8a0c93c8 418 Gene3D G3DSA:2.40.50.140 47 123 3.3E-33 T 12-10-2018 ALFP_2252 72ef3bd8be6ae83f5100451d8a0c93c8 418 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 418 1.8E-209 T 12-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 ALFP_2252 72ef3bd8be6ae83f5100451d8a0c93c8 418 SUPERFAMILY SSF50249 49 125 2.51E-28 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2252 72ef3bd8be6ae83f5100451d8a0c93c8 418 SMART SM00357 52 118 5.7E-17 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 ALFP_2252 72ef3bd8be6ae83f5100451d8a0c93c8 418 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 1.4E-31 T 12-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 ALFP_2252 72ef3bd8be6ae83f5100451d8a0c93c8 418 Gene3D G3DSA:1.10.720.10 1 46 1.1E-18 T 12-10-2018 ALFP_2252 72ef3bd8be6ae83f5100451d8a0c93c8 418 SMART SM00959 5 47 8.1E-18 T 12-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 ALFP_2252 72ef3bd8be6ae83f5100451d8a0c93c8 418 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 4.7E-24 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 ALFP_2252 72ef3bd8be6ae83f5100451d8a0c93c8 418 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 418 242.508 T 12-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 ALFP_2252 72ef3bd8be6ae83f5100451d8a0c93c8 418 SUPERFAMILY SSF68912 1 46 7.45E-12 T 12-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily ALFP_1548 d47ae00ad1d95542266f36769ab60dbb 239 SMART SM00448 2 114 2.4E-31 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_1548 d47ae00ad1d95542266f36769ab60dbb 239 Gene3D G3DSA:3.40.50.2300 1 121 3.4E-30 T 12-10-2018 ALFP_1548 d47ae00ad1d95542266f36769ab60dbb 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 223 1.1E-24 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_1548 d47ae00ad1d95542266f36769ab60dbb 239 Gene3D G3DSA:1.10.10.10 122 230 2.3E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1548 d47ae00ad1d95542266f36769ab60dbb 239 Pfam PF00072 Response regulator receiver domain 5 114 6.8E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_1548 d47ae00ad1d95542266f36769ab60dbb 239 SUPERFAMILY SSF52172 1 181 4.27E-33 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_1548 d47ae00ad1d95542266f36769ab60dbb 239 SMART SM00862 148 223 5.9E-26 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_0768 5a5a82f2b615ffd21b788985cb3b2f3e 550 Pfam PF00005 ABC transporter 336 469 1.8E-24 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0768 5a5a82f2b615ffd21b788985cb3b2f3e 550 Gene3D G3DSA:3.40.50.300 282 549 1.4E-77 T 12-10-2018 ALFP_0768 5a5a82f2b615ffd21b788985cb3b2f3e 550 Pfam PF12848 ABC transporter 226 302 5.2E-13 T 12-10-2018 IPR032781 ABC-transporter extension domain ALFP_0768 5a5a82f2b615ffd21b788985cb3b2f3e 550 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 1 549 7.3E-288 T 12-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 ALFP_0768 5a5a82f2b615ffd21b788985cb3b2f3e 550 SUPERFAMILY SSF52540 7 232 2.88E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0768 5a5a82f2b615ffd21b788985cb3b2f3e 550 SUPERFAMILY SSF52540 298 526 1.15E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0768 5a5a82f2b615ffd21b788985cb3b2f3e 550 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0768 5a5a82f2b615ffd21b788985cb3b2f3e 550 Gene3D G3DSA:3.40.50.300 1 281 4.7E-80 T 12-10-2018 ALFP_0768 5a5a82f2b615ffd21b788985cb3b2f3e 550 Pfam PF00005 ABC transporter 15 187 5.6E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0768 5a5a82f2b615ffd21b788985cb3b2f3e 550 SMART SM00382 24 232 5.6E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0768 5a5a82f2b615ffd21b788985cb3b2f3e 550 SMART SM00382 344 522 1.8E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1653 58ae13e325c4fa1ecdee3b3a9d930bfc 145 SUPERFAMILY SSF50814 1 145 3.74E-31 T 12-10-2018 IPR012674 Calycin ALFP_1653 58ae13e325c4fa1ecdee3b3a9d930bfc 145 Gene3D G3DSA:2.40.128.20 1 145 3.0E-39 T 12-10-2018 IPR012674 Calycin ALFP_1653 58ae13e325c4fa1ecdee3b3a9d930bfc 145 Pfam PF08212 Lipocalin-like domain 1 145 2.8E-38 T 12-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain ALFP_1653 58ae13e325c4fa1ecdee3b3a9d930bfc 145 PIRSF PIRSF036893 1 145 9.8E-41 T 12-10-2018 IPR022271 Lipocalin, ApoD type ALFP_2372 25bd7532a675a582e78dff7eaed973fe 278 Pfam PF01380 SIS domain 129 217 2.1E-8 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 ALFP_2372 25bd7532a675a582e78dff7eaed973fe 278 Gene3D G3DSA:1.10.10.10 3 85 2.7E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2372 25bd7532a675a582e78dff7eaed973fe 278 SUPERFAMILY SSF53697 104 240 1.56E-5 T 12-10-2018 ALFP_2372 25bd7532a675a582e78dff7eaed973fe 278 SUPERFAMILY SSF46689 7 82 3.4E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2372 25bd7532a675a582e78dff7eaed973fe 278 Gene3D G3DSA:3.40.50.10490 96 274 3.4E-13 T 12-10-2018 ALFP_2214 3bd18cc4c5f1f8448087c6afbbbfded4 70 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 12-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_2214 3bd18cc4c5f1f8448087c6afbbbfded4 70 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 19.91 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2214 3bd18cc4c5f1f8448087c6afbbbfded4 70 Pfam PF01165 Ribosomal protein S21 4 57 1.9E-20 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2214 3bd18cc4c5f1f8448087c6afbbbfded4 70 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 4 59 7.4E-23 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2214 3bd18cc4c5f1f8448087c6afbbbfded4 70 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 57 1.0E-16 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2214 3bd18cc4c5f1f8448087c6afbbbfded4 70 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 3.6E-15 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2214 3bd18cc4c5f1f8448087c6afbbbfded4 70 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 3.6E-15 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2214 3bd18cc4c5f1f8448087c6afbbbfded4 70 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 3.6E-15 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2214 3bd18cc4c5f1f8448087c6afbbbfded4 70 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 3.6E-15 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2214 3bd18cc4c5f1f8448087c6afbbbfded4 70 Gene3D G3DSA:1.20.5.1150 16 54 8.9E-20 T 12-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_0378 e0795979262c253bed93259586ba5294 399 Pfam PF07690 Major Facilitator Superfamily 3 352 3.4E-24 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_0378 e0795979262c253bed93259586ba5294 399 SUPERFAMILY SSF103473 3 391 4.45E-35 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_0378 e0795979262c253bed93259586ba5294 399 Gene3D G3DSA:1.20.1250.20 199 392 1.4E-12 T 12-10-2018 ALFP_0378 e0795979262c253bed93259586ba5294 399 Gene3D G3DSA:1.20.1250.20 1 190 1.6E-12 T 12-10-2018 ALFP_1850 7cb82b89069965fa16164901dd4d9132 252 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 140 151 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site ALFP_1850 7cb82b89069965fa16164901dd4d9132 252 Gene3D G3DSA:3.30.70.20 37 85 1.4E-7 T 12-10-2018 ALFP_1850 7cb82b89069965fa16164901dd4d9132 252 Pfam PF13247 4Fe-4S dicluster domain 101 195 5.7E-29 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ALFP_1850 7cb82b89069965fa16164901dd4d9132 252 Gene3D G3DSA:3.30.70.20 86 247 6.6E-60 T 12-10-2018 ALFP_1850 7cb82b89069965fa16164901dd4d9132 252 SUPERFAMILY SSF54862 51 230 1.26E-67 T 12-10-2018 ALFP_1168 96fc1a9001813daf2d99cecd473de072 108 SUPERFAMILY SSF46785 15 100 2.51E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1168 96fc1a9001813daf2d99cecd473de072 108 Pfam PF01022 Bacterial regulatory protein, arsR family 25 70 1.2E-10 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_1168 96fc1a9001813daf2d99cecd473de072 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 20 35 2.0E-10 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_1168 96fc1a9001813daf2d99cecd473de072 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 52 67 2.0E-10 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_1168 96fc1a9001813daf2d99cecd473de072 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 67 82 2.0E-10 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_1168 96fc1a9001813daf2d99cecd473de072 108 SMART SM00418 18 96 9.7E-23 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_1168 96fc1a9001813daf2d99cecd473de072 108 Gene3D G3DSA:1.10.10.10 6 102 5.8E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2383 5e2390d144688baadefa8a4d2a79d792 207 SUPERFAMILY SSF52172 81 203 8.4E-20 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_2383 5e2390d144688baadefa8a4d2a79d792 207 Gene3D G3DSA:3.40.50.2300 74 204 7.6E-18 T 12-10-2018 ALFP_2383 5e2390d144688baadefa8a4d2a79d792 207 Pfam PF00072 Response regulator receiver domain 83 195 3.1E-12 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2383 5e2390d144688baadefa8a4d2a79d792 207 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 6 50 7.2E-14 T 12-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 ALFP_2383 5e2390d144688baadefa8a4d2a79d792 207 SMART SM00448 81 196 3.5E-8 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2383 5e2390d144688baadefa8a4d2a79d792 207 Gene3D G3DSA:1.10.1660.10 6 64 1.0E-11 T 12-10-2018 ALFP_2383 5e2390d144688baadefa8a4d2a79d792 207 Pfam PF12728 Helix-turn-helix domain 5 55 3.1E-13 T 12-10-2018 ALFP_2383 5e2390d144688baadefa8a4d2a79d792 207 SUPERFAMILY SSF46955 5 58 3.66E-12 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily ALFP_3121 0e08d2be65cfc4bb1676c992a3528cf0 45 SUPERFAMILY SSF51391 2 35 4.45E-6 T 12-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 ALFP_0420 edc1897552e3e5114bba232bb4a6f24d 700 Pfam PF14718 Soluble lytic murein transglycosylase L domain 464 523 1.1E-9 T 12-10-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 ALFP_0420 edc1897552e3e5114bba232bb4a6f24d 700 SUPERFAMILY SSF48435 91 532 1.57E-87 T 12-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 ALFP_0420 edc1897552e3e5114bba232bb4a6f24d 700 Pfam PF01464 Transglycosylase SLT domain 542 647 8.2E-21 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 ALFP_0420 edc1897552e3e5114bba232bb4a6f24d 700 SUPERFAMILY SSF53955 536 695 1.78E-43 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily ALFP_0420 edc1897552e3e5114bba232bb4a6f24d 700 Gene3D G3DSA:1.10.530.10 530 693 1.4E-39 T 12-10-2018 ALFP_0420 edc1897552e3e5114bba232bb4a6f24d 700 Gene3D G3DSA:1.25.20.10 89 443 1.8E-47 T 12-10-2018 ALFP_2755 61d0f254be52cfb6e9f4f9ac770ca680 307 SUPERFAMILY SSF46785 12 99 1.66E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2755 61d0f254be52cfb6e9f4f9ac770ca680 307 Gene3D G3DSA:1.10.10.10 12 102 8.3E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2755 61d0f254be52cfb6e9f4f9ac770ca680 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 74 8.1E-13 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2755 61d0f254be52cfb6e9f4f9ac770ca680 307 SUPERFAMILY SSF53850 101 306 6.98E-25 T 12-10-2018 ALFP_2755 61d0f254be52cfb6e9f4f9ac770ca680 307 Pfam PF03466 LysR substrate binding domain 100 303 2.8E-25 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_2755 61d0f254be52cfb6e9f4f9ac770ca680 307 Gene3D G3DSA:3.40.190.10 179 279 2.0E-14 T 12-10-2018 ALFP_2755 61d0f254be52cfb6e9f4f9ac770ca680 307 Gene3D G3DSA:3.40.190.10 103 289 2.0E-14 T 12-10-2018 ALFP_3140 d2d6226eeba352d5172e7f5962a8756f 638 Pfam PF13667 ThiC-associated domain 22 99 3.3E-33 T 12-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 ALFP_3140 d2d6226eeba352d5172e7f5962a8756f 638 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 138 604 98.306 T 12-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 ALFP_3140 d2d6226eeba352d5172e7f5962a8756f 638 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 138 603 7.4E-211 T 12-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 ALFP_3140 d2d6226eeba352d5172e7f5962a8756f 638 Gene3D G3DSA:3.20.20.540 222 535 5.5E-152 T 12-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 ALFP_3140 d2d6226eeba352d5172e7f5962a8756f 638 Pfam PF01964 Radical SAM ThiC family 139 599 1.8E-197 T 12-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 ALFP_2864 ee398d89df9eb3b2a4f3548990d2b562 296 SUPERFAMILY SSF103481 193 288 3.27E-11 T 12-10-2018 ALFP_2864 ee398d89df9eb3b2a4f3548990d2b562 296 Pfam PF00892 EamA-like transporter family 159 291 1.2E-13 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_2864 ee398d89df9eb3b2a4f3548990d2b562 296 Pfam PF00892 EamA-like transporter family 18 147 1.4E-11 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_2864 ee398d89df9eb3b2a4f3548990d2b562 296 SUPERFAMILY SSF103481 93 147 3.53E-5 T 12-10-2018 ALFP_3057 868daf567a4277810230e1a314532b47 298 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 11 260 1.2E-37 T 12-10-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 ALFP_3057 868daf567a4277810230e1a314532b47 298 Gene3D G3DSA:3.40.190.10 53 265 8.1E-43 T 12-10-2018 ALFP_3057 868daf567a4277810230e1a314532b47 298 SUPERFAMILY SSF53850 65 252 2.94E-34 T 12-10-2018 ALFP_3057 868daf567a4277810230e1a314532b47 298 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 53 285 9.0E-44 T 12-10-2018 ALFP_3057 868daf567a4277810230e1a314532b47 298 Gene3D G3DSA:3.40.190.10 128 236 8.1E-43 T 12-10-2018 ALFP_1926 f92b041080469d46118a4d9d508f4cc6 434 Gene3D G3DSA:3.30.1490.20 158 232 1.8E-31 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 ALFP_1926 f92b041080469d46118a4d9d508f4cc6 434 SUPERFAMILY SSF52440 38 147 1.73E-28 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily ALFP_1926 f92b041080469d46118a4d9d508f4cc6 434 Gene3D G3DSA:3.40.50.20 36 157 2.4E-49 T 12-10-2018 ALFP_1926 f92b041080469d46118a4d9d508f4cc6 434 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 42 432 50.664 T 12-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 ALFP_1926 f92b041080469d46118a4d9d508f4cc6 434 Pfam PF02222 ATP-grasp domain 158 335 3.2E-52 T 12-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type ALFP_1926 f92b041080469d46118a4d9d508f4cc6 434 SUPERFAMILY SSF51246 360 432 8.95E-18 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 ALFP_1926 f92b041080469d46118a4d9d508f4cc6 434 Gene3D G3DSA:3.30.470.20 233 434 8.5E-63 T 12-10-2018 ALFP_1926 f92b041080469d46118a4d9d508f4cc6 434 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 48 432 1.2E-172 T 12-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 ALFP_1926 f92b041080469d46118a4d9d508f4cc6 434 SUPERFAMILY SSF56059 148 354 7.6E-56 T 12-10-2018 ALFP_1965 a575ceefa16e134ee07a10eda4e1401d 780 Gene3D G3DSA:2.40.160.50 434 780 1.3E-94 T 12-10-2018 ALFP_1965 a575ceefa16e134ee07a10eda4e1401d 780 Pfam PF01103 Surface antigen 457 780 2.8E-65 T 12-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 ALFP_1965 a575ceefa16e134ee07a10eda4e1401d 780 Gene3D G3DSA:3.10.20.310 101 182 5.5E-14 T 12-10-2018 ALFP_1965 a575ceefa16e134ee07a10eda4e1401d 780 Gene3D G3DSA:3.10.20.310 357 433 4.8E-26 T 12-10-2018 ALFP_1965 a575ceefa16e134ee07a10eda4e1401d 780 Gene3D G3DSA:3.10.20.310 184 273 2.8E-22 T 12-10-2018 ALFP_1965 a575ceefa16e134ee07a10eda4e1401d 780 Pfam PF07244 Surface antigen variable number repeat 101 181 3.9E-8 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 ALFP_1965 a575ceefa16e134ee07a10eda4e1401d 780 Pfam PF07244 Surface antigen variable number repeat 356 430 1.6E-12 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 ALFP_1965 a575ceefa16e134ee07a10eda4e1401d 780 Pfam PF07244 Surface antigen variable number repeat 185 272 2.0E-14 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 ALFP_1965 a575ceefa16e134ee07a10eda4e1401d 780 Pfam PF07244 Surface antigen variable number repeat 34 100 4.5E-6 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 ALFP_1965 a575ceefa16e134ee07a10eda4e1401d 780 Pfam PF07244 Surface antigen variable number repeat 277 353 5.4E-9 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 ALFP_1965 a575ceefa16e134ee07a10eda4e1401d 780 PIRSF PIRSF006076 2 780 1.5E-235 T 12-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 ALFP_1965 a575ceefa16e134ee07a10eda4e1401d 780 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 33 780 6.1E-249 T 12-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 ALFP_1965 a575ceefa16e134ee07a10eda4e1401d 780 Gene3D G3DSA:3.10.20.310 28 100 5.1E-22 T 12-10-2018 ALFP_1965 a575ceefa16e134ee07a10eda4e1401d 780 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 12 780 24.769 T 12-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 ALFP_1965 a575ceefa16e134ee07a10eda4e1401d 780 Gene3D G3DSA:3.10.20.310 274 355 1.8E-13 T 12-10-2018 ALFP_3677 55791090ff1025dfad67fdc1839143b5 264 SMART SM00342 181 263 1.5E-27 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_3677 55791090ff1025dfad67fdc1839143b5 264 Pfam PF12833 Helix-turn-helix domain 187 263 8.3E-23 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_3677 55791090ff1025dfad67fdc1839143b5 264 Pfam PF02311 AraC-like ligand binding domain 13 103 7.1E-13 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 ALFP_3677 55791090ff1025dfad67fdc1839143b5 264 SUPERFAMILY SSF46689 175 214 1.16E-5 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_3677 55791090ff1025dfad67fdc1839143b5 264 SUPERFAMILY SSF46689 218 263 9.86E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_3677 55791090ff1025dfad67fdc1839143b5 264 Gene3D G3DSA:1.10.10.60 169 223 6.3E-13 T 12-10-2018 ALFP_3677 55791090ff1025dfad67fdc1839143b5 264 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 247 263 9.8E-8 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_3677 55791090ff1025dfad67fdc1839143b5 264 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 232 247 9.8E-8 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_3677 55791090ff1025dfad67fdc1839143b5 264 Gene3D G3DSA:1.10.10.2730 224 264 9.3E-15 T 12-10-2018 ALFP_3677 55791090ff1025dfad67fdc1839143b5 264 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 218 259 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ALFP_3677 55791090ff1025dfad67fdc1839143b5 264 SUPERFAMILY SSF51215 21 127 1.83E-12 T 12-10-2018 IPR037923 Transcription regulator HTH-like ALFP_0775 b157d5e07d4e4f79c6bfad8964c70699 585 SUPERFAMILY SSF50715 373 582 2.35E-68 T 12-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 ALFP_0775 b157d5e07d4e4f79c6bfad8964c70699 585 Gene3D G3DSA:3.90.800.10 129 237 4.5E-102 T 12-10-2018 ALFP_0775 b157d5e07d4e4f79c6bfad8964c70699 585 Gene3D G3DSA:2.40.240.10 373 581 7.9E-74 T 12-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 ALFP_0775 b157d5e07d4e4f79c6bfad8964c70699 585 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_0775 b157d5e07d4e4f79c6bfad8964c70699 585 SUPERFAMILY SSF52374 52 377 2.25E-92 T 12-10-2018 ALFP_0775 b157d5e07d4e4f79c6bfad8964c70699 585 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 373 563 2.7E-51 T 12-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 ALFP_0775 b157d5e07d4e4f79c6bfad8964c70699 585 Gene3D G3DSA:3.40.50.620 53 276 4.5E-102 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_0775 b157d5e07d4e4f79c6bfad8964c70699 585 Gene3D G3DSA:2.40.240.10 381 500 7.9E-74 T 12-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 ALFP_0775 b157d5e07d4e4f79c6bfad8964c70699 585 Gene3D G3DSA:1.10.1160.10 294 372 7.9E-31 T 12-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 ALFP_0775 b157d5e07d4e4f79c6bfad8964c70699 585 PRINTS PR00987 Glutamyl-tRNA synthetase signature 55 67 1.5E-8 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 ALFP_0775 b157d5e07d4e4f79c6bfad8964c70699 585 PRINTS PR00987 Glutamyl-tRNA synthetase signature 84 97 1.5E-8 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 ALFP_0775 b157d5e07d4e4f79c6bfad8964c70699 585 PRINTS PR00987 Glutamyl-tRNA synthetase signature 238 248 1.5E-8 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 ALFP_0775 b157d5e07d4e4f79c6bfad8964c70699 585 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 52 369 1.2E-103 T 12-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 ALFP_0775 b157d5e07d4e4f79c6bfad8964c70699 585 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 2 584 51.67 T 12-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 ALFP_0775 b157d5e07d4e4f79c6bfad8964c70699 585 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 52 584 1.9E-210 T 12-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 ALFP_0516 09ae4d32ffba012842ca2aabb8438d10 168 Pfam PF08281 Sigma-70, region 4 107 156 1.4E-12 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ALFP_0516 09ae4d32ffba012842ca2aabb8438d10 168 SUPERFAMILY SSF88946 11 94 3.1E-11 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_0516 09ae4d32ffba012842ca2aabb8438d10 168 Gene3D G3DSA:1.10.10.10 82 167 7.5E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0516 09ae4d32ffba012842ca2aabb8438d10 168 SUPERFAMILY SSF88659 102 165 1.79E-12 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like ALFP_0516 09ae4d32ffba012842ca2aabb8438d10 168 Gene3D G3DSA:1.10.1740.10 3 79 3.1E-7 T 12-10-2018 ALFP_0516 09ae4d32ffba012842ca2aabb8438d10 168 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 163 9.2E-20 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 ALFP_0516 09ae4d32ffba012842ca2aabb8438d10 168 Pfam PF04542 Sigma-70 region 2 14 77 4.7E-8 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_0484 81ec80d75b77550ac68e26e8d8c774fd 750 Gene3D G3DSA:2.40.170.20 219 750 3.3E-81 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_0484 81ec80d75b77550ac68e26e8d8c774fd 750 Gene3D G3DSA:2.170.130.10 100 218 1.8E-20 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_0484 81ec80d75b77550ac68e26e8d8c774fd 750 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 733 750 - T 12-10-2018 IPR010917 TonB-dependent receptor, conserved site ALFP_0484 81ec80d75b77550ac68e26e8d8c774fd 750 Pfam PF07715 TonB-dependent Receptor Plug Domain 106 199 5.7E-14 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_0484 81ec80d75b77550ac68e26e8d8c774fd 750 SUPERFAMILY SSF56935 60 750 8.06E-107 T 12-10-2018 ALFP_0484 81ec80d75b77550ac68e26e8d8c774fd 750 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 107 750 1.1E-125 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 ALFP_0484 81ec80d75b77550ac68e26e8d8c774fd 750 Pfam PF00593 TonB dependent receptor 319 748 2.1E-36 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_0214 1d29f3f8d0c4ea69d75aac8fc33e3448 329 PRINTS PR00139 Asparaginase/glutaminase family signature 265 283 3.4E-16 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 ALFP_0214 1d29f3f8d0c4ea69d75aac8fc33e3448 329 PRINTS PR00139 Asparaginase/glutaminase family signature 7 18 3.4E-16 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 ALFP_0214 1d29f3f8d0c4ea69d75aac8fc33e3448 329 PRINTS PR00139 Asparaginase/glutaminase family signature 86 104 3.4E-16 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 ALFP_0214 1d29f3f8d0c4ea69d75aac8fc33e3448 329 Pfam PF00710 Asparaginase, N-terminal 7 193 1.2E-51 T 12-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 ALFP_0214 1d29f3f8d0c4ea69d75aac8fc33e3448 329 PIRSF PIRSF500176 4 328 2.0E-71 T 12-10-2018 ALFP_0214 1d29f3f8d0c4ea69d75aac8fc33e3448 329 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 9 17 - T 12-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 ALFP_0214 1d29f3f8d0c4ea69d75aac8fc33e3448 329 Gene3D G3DSA:3.40.50.40 218 329 2.7E-30 T 12-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 ALFP_0214 1d29f3f8d0c4ea69d75aac8fc33e3448 329 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 5 329 5.2E-105 T 12-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 ALFP_0214 1d29f3f8d0c4ea69d75aac8fc33e3448 329 Gene3D G3DSA:3.40.50.1170 3 217 3.4E-72 T 12-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 ALFP_0214 1d29f3f8d0c4ea69d75aac8fc33e3448 329 SUPERFAMILY SSF53774 5 328 2.22E-87 T 12-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 ALFP_0214 1d29f3f8d0c4ea69d75aac8fc33e3448 329 PIRSF PIRSF001220 3 328 3.2E-81 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 ALFP_0214 1d29f3f8d0c4ea69d75aac8fc33e3448 329 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 87 97 - T 12-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 ALFP_0214 1d29f3f8d0c4ea69d75aac8fc33e3448 329 SMART SM00870 6 323 1.0E-111 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 ALFP_1024 9656d71b904bd008500040e3b5e2cff1 388 Gene3D G3DSA:3.40.190.10 171 343 2.8E-104 T 12-10-2018 ALFP_1024 9656d71b904bd008500040e3b5e2cff1 388 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 54 337 1.7E-38 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_1024 9656d71b904bd008500040e3b5e2cff1 388 Gene3D G3DSA:3.40.190.170 50 356 2.8E-104 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_1024 9656d71b904bd008500040e3b5e2cff1 388 PIRSF PIRSF039026 17 377 1.5E-128 T 12-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like ALFP_3381 02e66c315deb6a2d462350dd82192241 421 Gene3D G3DSA:3.40.50.720 3 200 5.5E-62 T 12-10-2018 ALFP_3381 02e66c315deb6a2d462350dd82192241 421 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 205 292 1.1E-26 T 12-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 ALFP_3381 02e66c315deb6a2d462350dd82192241 421 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 324 415 1.9E-16 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 ALFP_3381 02e66c315deb6a2d462350dd82192241 421 PIRSF PIRSF500136 1 420 1.4E-143 T 12-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 ALFP_3381 02e66c315deb6a2d462350dd82192241 421 SMART SM00984 324 421 8.9E-20 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 ALFP_3381 02e66c315deb6a2d462350dd82192241 421 SUPERFAMILY SSF48179 205 298 1.22E-28 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_3381 02e66c315deb6a2d462350dd82192241 421 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 4 409 1.4E-115 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 ALFP_3381 02e66c315deb6a2d462350dd82192241 421 Gene3D G3DSA:3.40.50.720 204 421 4.8E-57 T 12-10-2018 ALFP_3381 02e66c315deb6a2d462350dd82192241 421 PIRSF PIRSF000124 4 418 1.0E-71 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 ALFP_3381 02e66c315deb6a2d462350dd82192241 421 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 5 187 5.7E-56 T 12-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 ALFP_3381 02e66c315deb6a2d462350dd82192241 421 SUPERFAMILY SSF52413 318 419 1.7E-21 T 12-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 ALFP_3381 02e66c315deb6a2d462350dd82192241 421 SUPERFAMILY SSF51735 6 197 2.12E-43 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2888 0c1cff0797adb4cdb63ac041a0ce4e05 420 Pfam PF02515 CoA-transferase family III 20 398 1.7E-133 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 ALFP_2888 0c1cff0797adb4cdb63ac041a0ce4e05 420 Gene3D G3DSA:3.40.50.10540 19 413 1.2E-143 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_2888 0c1cff0797adb4cdb63ac041a0ce4e05 420 Gene3D G3DSA:3.30.1540.10 258 349 1.2E-143 T 12-10-2018 ALFP_2888 0c1cff0797adb4cdb63ac041a0ce4e05 420 SUPERFAMILY SSF89796 16 419 1.31E-141 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_0686 d07183f1eb9916b34c4a2aca59d4d430 502 SUPERFAMILY SSF103473 8 371 1.83E-42 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_0686 d07183f1eb9916b34c4a2aca59d4d430 502 Pfam PF00083 Sugar (and other) transporter 31 153 1.7E-5 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ALFP_0686 d07183f1eb9916b34c4a2aca59d4d430 502 Gene3D G3DSA:1.20.1250.20 4 183 6.4E-13 T 12-10-2018 ALFP_0686 d07183f1eb9916b34c4a2aca59d4d430 502 Pfam PF07690 Major Facilitator Superfamily 205 374 6.8E-20 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_0686 d07183f1eb9916b34c4a2aca59d4d430 502 Gene3D G3DSA:1.20.1250.20 199 376 4.5E-21 T 12-10-2018 ALFP_0415 e8c8e56a119354d9c56bf262a85ff81d 387 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 7 387 8.5E-183 T 12-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 ALFP_0415 e8c8e56a119354d9c56bf262a85ff81d 387 Gene3D G3DSA:3.30.300.10 104 379 1.1E-177 T 12-10-2018 ALFP_0415 e8c8e56a119354d9c56bf262a85ff81d 387 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 237 375 3.8E-68 T 12-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 ALFP_0415 e8c8e56a119354d9c56bf262a85ff81d 387 SUPERFAMILY SSF55973 5 112 5.1E-46 T 12-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 ALFP_0415 e8c8e56a119354d9c56bf262a85ff81d 387 Gene3D G3DSA:3.30.300.10 7 237 1.1E-177 T 12-10-2018 ALFP_0415 e8c8e56a119354d9c56bf262a85ff81d 387 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 263 271 - T 12-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 ALFP_0415 e8c8e56a119354d9c56bf262a85ff81d 387 Pfam PF02772 S-adenosylmethionine synthetase, central domain 119 235 7.9E-46 T 12-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 ALFP_0415 e8c8e56a119354d9c56bf262a85ff81d 387 SUPERFAMILY SSF55973 115 236 2.94E-52 T 12-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 ALFP_0415 e8c8e56a119354d9c56bf262a85ff81d 387 SUPERFAMILY SSF55973 237 385 7.85E-67 T 12-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 ALFP_0415 e8c8e56a119354d9c56bf262a85ff81d 387 PIRSF PIRSF000497 1 387 1.0E-170 T 12-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 ALFP_0415 e8c8e56a119354d9c56bf262a85ff81d 387 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 120 130 - T 12-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 ALFP_0415 e8c8e56a119354d9c56bf262a85ff81d 387 Gene3D G3DSA:3.30.300.10 13 274 1.1E-177 T 12-10-2018 ALFP_0415 e8c8e56a119354d9c56bf262a85ff81d 387 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 4 387 56.788 T 12-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 ALFP_0415 e8c8e56a119354d9c56bf262a85ff81d 387 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 6 103 1.0E-40 T 12-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 ALFP_3731 ec110b511312689133eac4bdde84d510 121 SUPERFAMILY SSF54211 5 106 1.11E-16 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_3731 ec110b511312689133eac4bdde84d510 121 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 5 121 13.225 T 12-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 ALFP_3731 ec110b511312689133eac4bdde84d510 121 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 59 73 - T 12-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 ALFP_3731 ec110b511312689133eac4bdde84d510 121 Gene3D G3DSA:3.30.230.10 1 119 2.1E-22 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ALFP_3731 ec110b511312689133eac4bdde84d510 121 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 42 95 4.0E-7 T 12-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 ALFP_3731 ec110b511312689133eac4bdde84d510 121 Pfam PF00825 Ribonuclease P 5 107 9.7E-19 T 12-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 ALFP_0217 5c12b7a436c1af2dbbd8cafafe445973 269 SUPERFAMILY SSF53850 7 260 7.01E-58 T 12-10-2018 ALFP_0217 5c12b7a436c1af2dbbd8cafafe445973 269 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 26 258 7.8E-55 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_0217 5c12b7a436c1af2dbbd8cafafe445973 269 SMART SM00062 25 260 2.7E-62 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_0217 5c12b7a436c1af2dbbd8cafafe445973 269 Gene3D G3DSA:3.40.190.10 111 216 5.3E-69 T 12-10-2018 ALFP_0217 5c12b7a436c1af2dbbd8cafafe445973 269 Gene3D G3DSA:3.40.190.10 28 257 5.3E-69 T 12-10-2018 ALFP_2866 02bea0363665131ffdff90d4082d8da5 303 Gene3D G3DSA:3.40.50.620 9 212 1.6E-53 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_2866 02bea0363665131ffdff90d4082d8da5 303 PIRSF PIRSF002936 4 303 2.2E-136 T 12-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 ALFP_2866 02bea0363665131ffdff90d4082d8da5 303 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 32 256 5.7E-46 T 12-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 ALFP_2866 02bea0363665131ffdff90d4082d8da5 303 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 11 303 5.1E-125 T 12-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 ALFP_2866 02bea0363665131ffdff90d4082d8da5 303 SUPERFAMILY SSF52402 8 210 3.09E-63 T 12-10-2018 ALFP_1441 6ae9c0e88360eb36d3947bfcd29aba90 764 Gene3D G3DSA:3.40.50.300 5 266 4.8E-92 T 12-10-2018 ALFP_1441 6ae9c0e88360eb36d3947bfcd29aba90 764 Pfam PF00580 UvrD/REP helicase N-terminal domain 5 265 1.4E-75 T 12-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 ALFP_1441 6ae9c0e88360eb36d3947bfcd29aba90 764 Pfam PF13361 UvrD-like helicase C-terminal domain 271 633 5.6E-70 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 ALFP_1441 6ae9c0e88360eb36d3947bfcd29aba90 764 Gene3D G3DSA:1.10.10.160 109 181 4.8E-92 T 12-10-2018 IPR013986 DExx box DNA helicase domain superfamily ALFP_1441 6ae9c0e88360eb36d3947bfcd29aba90 764 Gene3D G3DSA:3.40.50.300 274 650 1.7E-113 T 12-10-2018 ALFP_1441 6ae9c0e88360eb36d3947bfcd29aba90 764 SUPERFAMILY SSF52540 3 658 1.78E-174 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1441 6ae9c0e88360eb36d3947bfcd29aba90 764 Gene3D G3DSA:1.10.486.10 376 563 1.7E-113 T 12-10-2018 ALFP_3395 da59a188d3d8eb906e9ed3d345b89bea 247 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 14 129 1.5E-21 T 12-10-2018 IPR017748 T6S-associated protein TagF ALFP_3395 da59a188d3d8eb906e9ed3d345b89bea 247 PIRSF PIRSF029287 6 239 3.4E-30 T 12-10-2018 IPR017748 T6S-associated protein TagF ALFP_3395 da59a188d3d8eb906e9ed3d345b89bea 247 Gene3D G3DSA:3.40.1730.10 11 240 2.5E-26 T 12-10-2018 IPR038225 T6S-associated protein TagF superfamily ALFP_3395 da59a188d3d8eb906e9ed3d345b89bea 247 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 14 143 9.7E-26 T 12-10-2018 IPR017748 T6S-associated protein TagF ALFP_3268 ee01a71b2353f030596fb54ab0bb7d60 194 Pfam PF14334 Domain of unknown function (DUF4390) 33 183 7.1E-52 T 12-10-2018 IPR025500 Protein of unknown function DUF4390 ALFP_3185 68d1b7f4ea3909ad71dd366965be2196 477 Pfam PF07690 Major Facilitator Superfamily 30 420 1.8E-49 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_3185 68d1b7f4ea3909ad71dd366965be2196 477 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 31 445 9.1E-73 T 12-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 ALFP_3185 68d1b7f4ea3909ad71dd366965be2196 477 Gene3D G3DSA:1.20.1720.10 27 271 7.6E-50 T 12-10-2018 ALFP_3185 68d1b7f4ea3909ad71dd366965be2196 477 Gene3D G3DSA:1.20.1250.20 276 472 1.1E-15 T 12-10-2018 ALFP_3185 68d1b7f4ea3909ad71dd366965be2196 477 SUPERFAMILY SSF103473 15 466 1.31E-59 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_3230 6d4c7f06836b532dcd3f1311ff35441a 188 PIRSF PIRSF006707 1 174 5.2E-54 T 12-10-2018 IPR026282 DNA-binding protein, MJ1563 type ALFP_3230 6d4c7f06836b532dcd3f1311ff35441a 188 Pfam PF12802 MarR family 26 71 1.7E-7 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_3230 6d4c7f06836b532dcd3f1311ff35441a 188 SUPERFAMILY SSF46785 7 148 2.05E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3230 6d4c7f06836b532dcd3f1311ff35441a 188 Gene3D G3DSA:1.10.10.10 1 86 3.5E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2796 721cf82b494216d178ef5a8788886d0b 129 SUPERFAMILY SSF52833 24 105 6.43E-16 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_2796 721cf82b494216d178ef5a8788886d0b 129 Gene3D G3DSA:3.40.30.10 11 108 9.9E-14 T 12-10-2018 ALFP_2796 721cf82b494216d178ef5a8788886d0b 129 Pfam PF00085 Thioredoxin 17 87 1.0E-11 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 ALFP_2477 eb868d74fbb96b542f4222ae66338f30 210 Pfam PF04390 Lipopolysaccharide-assembly 48 175 4.5E-8 T 12-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 ALFP_2477 eb868d74fbb96b542f4222ae66338f30 210 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 22 180 21.104 T 12-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 ALFP_2477 eb868d74fbb96b542f4222ae66338f30 210 Gene3D G3DSA:3.30.160.150 49 189 3.8E-37 T 12-10-2018 ALFP_0756 25a022818211f6885e1c9a22826cfc39 282 Pfam PF00551 Formyl transferase 87 263 4.3E-38 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ALFP_0756 25a022818211f6885e1c9a22826cfc39 282 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 5 281 1.4E-100 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 ALFP_0756 25a022818211f6885e1c9a22826cfc39 282 SUPERFAMILY SSF55021 4 82 2.17E-17 T 12-10-2018 ALFP_0756 25a022818211f6885e1c9a22826cfc39 282 Gene3D G3DSA:3.30.70.260 1 85 1.4E-27 T 12-10-2018 ALFP_0756 25a022818211f6885e1c9a22826cfc39 282 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 1 281 47.144 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 ALFP_0756 25a022818211f6885e1c9a22826cfc39 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 87 109 2.6E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 ALFP_0756 25a022818211f6885e1c9a22826cfc39 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 6 32 2.6E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 ALFP_0756 25a022818211f6885e1c9a22826cfc39 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 233 255 2.6E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 ALFP_0756 25a022818211f6885e1c9a22826cfc39 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 109 136 2.6E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 ALFP_0756 25a022818211f6885e1c9a22826cfc39 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 255 280 2.6E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 ALFP_0756 25a022818211f6885e1c9a22826cfc39 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 38 50 2.6E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 ALFP_0756 25a022818211f6885e1c9a22826cfc39 282 SUPERFAMILY SSF53328 87 282 6.54E-62 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ALFP_0756 25a022818211f6885e1c9a22826cfc39 282 PIRSF PIRSF036480 1 282 7.1E-111 T 12-10-2018 ALFP_0756 25a022818211f6885e1c9a22826cfc39 282 Gene3D G3DSA:3.40.50.170 86 281 4.0E-70 T 12-10-2018 ALFP_0518 6841aeaf9ac789da9d327e6a4926d908 93 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 30 50 - T 12-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 ALFP_0518 6841aeaf9ac789da9d327e6a4926d908 93 Pfam PF13616 PPIC-type PPIASE domain 4 91 1.4E-24 T 12-10-2018 ALFP_0518 6841aeaf9ac789da9d327e6a4926d908 93 Gene3D G3DSA:3.10.50.40 2 92 9.2E-36 T 12-10-2018 ALFP_0518 6841aeaf9ac789da9d327e6a4926d908 93 SUPERFAMILY SSF54534 4 92 1.31E-29 T 12-10-2018 ALFP_3514 f86dcc7aff87a995c7e3eb73d57bff7e 456 Pfam PF12804 MobA-like NTP transferase domain 5 249 3.9E-23 T 12-10-2018 IPR025877 MobA-like NTP transferase ALFP_3514 f86dcc7aff87a995c7e3eb73d57bff7e 456 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 1 452 42.691 T 12-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 ALFP_3514 f86dcc7aff87a995c7e3eb73d57bff7e 456 Gene3D G3DSA:2.160.10.10 228 456 9.3E-64 T 12-10-2018 ALFP_3514 f86dcc7aff87a995c7e3eb73d57bff7e 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 318 352 1.3E-4 T 12-10-2018 IPR001451 Hexapeptide repeat ALFP_3514 f86dcc7aff87a995c7e3eb73d57bff7e 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 268 299 4.7E-4 T 12-10-2018 IPR001451 Hexapeptide repeat ALFP_3514 f86dcc7aff87a995c7e3eb73d57bff7e 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 395 427 2.2E-8 T 12-10-2018 IPR001451 Hexapeptide repeat ALFP_3514 f86dcc7aff87a995c7e3eb73d57bff7e 456 SUPERFAMILY SSF51161 255 436 1.31E-48 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily ALFP_3514 f86dcc7aff87a995c7e3eb73d57bff7e 456 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 3 454 1.6E-192 T 12-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 ALFP_3514 f86dcc7aff87a995c7e3eb73d57bff7e 456 SUPERFAMILY SSF53448 2 252 1.86E-59 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_3514 f86dcc7aff87a995c7e3eb73d57bff7e 456 Gene3D G3DSA:3.90.550.10 1 227 4.6E-62 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_1111 9743524d67389272e252063f5b8d9a32 432 SUPERFAMILY SSF55347 137 302 3.2E-53 T 12-10-2018 ALFP_1111 9743524d67389272e252063f5b8d9a32 432 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 129 9.5E-22 T 12-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 ALFP_1111 9743524d67389272e252063f5b8d9a32 432 Pfam PF00742 Homoserine dehydrogenase 137 315 3.3E-64 T 12-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 ALFP_1111 9743524d67389272e252063f5b8d9a32 432 SUPERFAMILY SSF55021 346 423 3.23E-13 T 12-10-2018 ALFP_1111 9743524d67389272e252063f5b8d9a32 432 SUPERFAMILY SSF51735 1 158 5.09E-36 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1111 9743524d67389272e252063f5b8d9a32 432 Gene3D G3DSA:3.30.360.10 136 348 1.2E-168 T 12-10-2018 ALFP_1111 9743524d67389272e252063f5b8d9a32 432 Pfam PF01842 ACT domain 354 418 2.2E-12 T 12-10-2018 IPR002912 ACT domain ALFP_1111 9743524d67389272e252063f5b8d9a32 432 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 183 205 - T 12-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 ALFP_1111 9743524d67389272e252063f5b8d9a32 432 Gene3D G3DSA:3.40.50.720 4 340 1.2E-168 T 12-10-2018 ALFP_1111 9743524d67389272e252063f5b8d9a32 432 Gene3D G3DSA:3.30.70.260 349 420 1.2E-168 T 12-10-2018 ALFP_1111 9743524d67389272e252063f5b8d9a32 432 PIRSF PIRSF000098 1 432 5.1E-164 T 12-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 ALFP_1604 44ef44904dfbc3002d5a409d866fc5c4 311 Pfam PF04444 Catechol dioxygenase N terminus 27 94 1.2E-23 T 12-10-2018 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 ALFP_1604 44ef44904dfbc3002d5a409d866fc5c4 311 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 136 164 - T 12-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 ALFP_1604 44ef44904dfbc3002d5a409d866fc5c4 311 Pfam PF00775 Dioxygenase 105 293 8.8E-67 T 12-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 ALFP_1604 44ef44904dfbc3002d5a409d866fc5c4 311 Gene3D G3DSA:2.60.130.10 1 311 2.0E-121 T 12-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 ALFP_1604 44ef44904dfbc3002d5a409d866fc5c4 311 SUPERFAMILY SSF49482 4 294 3.4E-97 T 12-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 ALFP_1604 44ef44904dfbc3002d5a409d866fc5c4 311 TIGRFAM TIGR02439 catechol_proteo: catechol 1,2-dioxygenase 7 292 9.3E-142 T 12-10-2018 IPR012801 Catechol 1,2-dioxygenase, proteobacteria GO:0005506|GO:0018576|GO:0019614|GO:0055114 KEGG: 00361+1.13.11.1|KEGG: 00362+1.13.11.1|KEGG: 00364+1.13.11.1|KEGG: 00623+1.13.11.1 ALFP_1719 3280bc42275a25b36823c4833b17a298 435 Pfam PF01458 Uncharacterized protein family (UPF0051) 175 400 3.4E-72 T 12-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 ALFP_1719 3280bc42275a25b36823c4833b17a298 435 SUPERFAMILY SSF101960 23 425 7.98E-101 T 12-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily ALFP_1719 3280bc42275a25b36823c4833b17a298 435 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 142 416 8.7E-84 T 12-10-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 ALFP_2106 a7996dc1eba10fd40425922ee55d1848 360 SMART SM00382 66 237 1.6E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2106 a7996dc1eba10fd40425922ee55d1848 360 PRINTS PR00142 RecA protein signature 174 203 1.4E-84 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ALFP_2106 a7996dc1eba10fd40425922ee55d1848 360 PRINTS PR00142 RecA protein signature 102 131 1.4E-84 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ALFP_2106 a7996dc1eba10fd40425922ee55d1848 360 PRINTS PR00142 RecA protein signature 136 165 1.4E-84 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ALFP_2106 a7996dc1eba10fd40425922ee55d1848 360 PRINTS PR00142 RecA protein signature 219 247 1.4E-84 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ALFP_2106 a7996dc1eba10fd40425922ee55d1848 360 PRINTS PR00142 RecA protein signature 252 281 1.4E-84 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ALFP_2106 a7996dc1eba10fd40425922ee55d1848 360 PRINTS PR00142 RecA protein signature 306 323 1.4E-84 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ALFP_2106 a7996dc1eba10fd40425922ee55d1848 360 Gene3D G3DSA:3.30.250.10 278 337 8.0E-29 T 12-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal ALFP_2106 a7996dc1eba10fd40425922ee55d1848 360 Pfam PF00154 recA bacterial DNA recombination protein 15 277 3.8E-144 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ALFP_2106 a7996dc1eba10fd40425922ee55d1848 360 SUPERFAMILY SSF54752 277 335 3.01E-22 T 12-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal ALFP_2106 a7996dc1eba10fd40425922ee55d1848 360 SUPERFAMILY SSF52540 13 276 2.48E-67 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2106 a7996dc1eba10fd40425922ee55d1848 360 Gene3D G3DSA:3.40.50.300 34 277 5.1E-84 T 12-10-2018 ALFP_2106 a7996dc1eba10fd40425922ee55d1848 360 ProSitePatterns PS00321 recA signature. 222 230 - T 12-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 ALFP_2106 a7996dc1eba10fd40425922ee55d1848 360 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 12 333 5.1E-172 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ALFP_2106 a7996dc1eba10fd40425922ee55d1848 360 Hamap MF_00268 Protein RecA [recA]. 13 338 51.612 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ALFP_2402 3bed3e858e877bdc3b4eab1fb61fc677 458 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 16 454 1.4E-118 T 12-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 ALFP_2402 3bed3e858e877bdc3b4eab1fb61fc677 458 Pfam PF00206 Lyase 18 315 5.4E-59 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal ALFP_2402 3bed3e858e877bdc3b4eab1fb61fc677 458 Pfam PF08328 Adenylosuccinate lyase C-terminal 334 448 4.3E-47 T 12-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 ALFP_2402 3bed3e858e877bdc3b4eab1fb61fc677 458 Gene3D G3DSA:1.20.200.10 121 449 4.2E-143 T 12-10-2018 ALFP_2402 3bed3e858e877bdc3b4eab1fb61fc677 458 SUPERFAMILY SSF48557 6 450 6.75E-100 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 ALFP_2402 3bed3e858e877bdc3b4eab1fb61fc677 458 ProSitePatterns PS00163 Fumarate lyases signature. 297 306 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 ALFP_2402 3bed3e858e877bdc3b4eab1fb61fc677 458 Gene3D G3DSA:1.10.275.10 2 120 8.5E-42 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal ALFP_2402 3bed3e858e877bdc3b4eab1fb61fc677 458 PRINTS PR00149 Fumarate lyase superfamily signature 254 281 4.2E-16 T 12-10-2018 IPR000362 Fumarate lyase family ALFP_2402 3bed3e858e877bdc3b4eab1fb61fc677 458 PRINTS PR00149 Fumarate lyase superfamily signature 166 184 4.2E-16 T 12-10-2018 IPR000362 Fumarate lyase family ALFP_2402 3bed3e858e877bdc3b4eab1fb61fc677 458 PRINTS PR00149 Fumarate lyase superfamily signature 297 313 4.2E-16 T 12-10-2018 IPR000362 Fumarate lyase family ALFP_2402 3bed3e858e877bdc3b4eab1fb61fc677 458 PRINTS PR00149 Fumarate lyase superfamily signature 120 138 4.2E-16 T 12-10-2018 IPR000362 Fumarate lyase family ALFP_2402 3bed3e858e877bdc3b4eab1fb61fc677 458 Gene3D G3DSA:1.10.40.30 385 448 4.2E-143 T 12-10-2018 ALFP_1525 20f8e241513c1723ef7a7ab23b2d3c04 240 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 6 207 2.3E-41 T 12-10-2018 IPR006328 L-2-Haloacid dehalogenase GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 ALFP_1525 20f8e241513c1723ef7a7ab23b2d3c04 240 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 89 193 1.6E-15 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 ALFP_1525 20f8e241513c1723ef7a7ab23b2d3c04 240 Pfam PF13419 Haloacid dehalogenase-like hydrolase 91 202 2.8E-9 T 12-10-2018 ALFP_1525 20f8e241513c1723ef7a7ab23b2d3c04 240 Gene3D G3DSA:3.40.50.1000 4 226 6.3E-77 T 12-10-2018 IPR023214 HAD superfamily ALFP_1525 20f8e241513c1723ef7a7ab23b2d3c04 240 Gene3D G3DSA:1.10.150.240 33 104 6.3E-77 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 ALFP_1525 20f8e241513c1723ef7a7ab23b2d3c04 240 SUPERFAMILY SSF56784 4 237 1.37E-39 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_1525 20f8e241513c1723ef7a7ab23b2d3c04 240 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 164 184 8.3E-8 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 ALFP_1525 20f8e241513c1723ef7a7ab23b2d3c04 240 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 191 204 8.3E-8 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 ALFP_1525 20f8e241513c1723ef7a7ab23b2d3c04 240 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 8.3E-8 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 ALFP_1525 20f8e241513c1723ef7a7ab23b2d3c04 240 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 146 162 8.3E-8 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 ALFP_3522 2271811a418b38911226ac1ae90dc940 68 Pfam PF11137 Protein of unknown function (DUF2909) 1 60 1.1E-24 T 12-10-2018 IPR021313 Protein of unknown function DUF2909 ALFP_0763 b764636d4cae14f65f062106b7682b8f 355 Gene3D G3DSA:3.60.120.10 3 352 2.9E-117 T 12-10-2018 IPR005801 ADC synthase GO:0009058 ALFP_0763 b764636d4cae14f65f062106b7682b8f 355 PRINTS PR00095 Anthranilate synthase component I signature 191 204 8.9E-16 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 ALFP_0763 b764636d4cae14f65f062106b7682b8f 355 PRINTS PR00095 Anthranilate synthase component I signature 205 218 8.9E-16 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 ALFP_0763 b764636d4cae14f65f062106b7682b8f 355 PRINTS PR00095 Anthranilate synthase component I signature 300 314 8.9E-16 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 ALFP_0763 b764636d4cae14f65f062106b7682b8f 355 PRINTS PR00095 Anthranilate synthase component I signature 285 299 8.9E-16 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 ALFP_0763 b764636d4cae14f65f062106b7682b8f 355 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 76 348 1.6E-109 T 12-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 ALFP_0763 b764636d4cae14f65f062106b7682b8f 355 Pfam PF00425 chorismate binding enzyme 89 344 6.9E-89 T 12-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal ALFP_0763 b764636d4cae14f65f062106b7682b8f 355 SUPERFAMILY SSF56322 30 350 6.15E-105 T 12-10-2018 IPR005801 ADC synthase GO:0009058 ALFP_1100 48b5140ed8e4becb5de4aa99e43b9295 132 Pfam PF01250 Ribosomal protein S6 3 89 1.3E-25 T 12-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1100 48b5140ed8e4becb5de4aa99e43b9295 132 Gene3D G3DSA:3.30.70.60 1 91 3.3E-31 T 12-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 ALFP_1100 48b5140ed8e4becb5de4aa99e43b9295 132 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.11 T 12-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 ALFP_1100 48b5140ed8e4becb5de4aa99e43b9295 132 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 91 8.8E-31 T 12-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1100 48b5140ed8e4becb5de4aa99e43b9295 132 SUPERFAMILY SSF54995 1 103 1.28E-34 T 12-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2514 34582f4230727fa651c9084214169b9a 301 TIGRFAM TIGR00688 rarD: protein RarD 3 258 3.3E-51 T 12-10-2018 IPR004626 RarD protein GO:0005887 ALFP_2514 34582f4230727fa651c9084214169b9a 301 SUPERFAMILY SSF103481 187 285 1.7E-6 T 12-10-2018 ALFP_2514 34582f4230727fa651c9084214169b9a 301 SUPERFAMILY SSF103481 36 140 8.89E-7 T 12-10-2018 ALFP_1108 25b86c5b878cdcc49ac2a4eaf76f84be 155 Pfam PF00578 AhpC/TSA family 6 132 3.8E-36 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 ALFP_1108 25b86c5b878cdcc49ac2a4eaf76f84be 155 PIRSF PIRSF000239 1 153 3.7E-31 T 12-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 ALFP_1108 25b86c5b878cdcc49ac2a4eaf76f84be 155 SUPERFAMILY SSF52833 4 153 1.74E-49 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_1108 25b86c5b878cdcc49ac2a4eaf76f84be 155 Gene3D G3DSA:3.40.30.10 1 153 5.6E-48 T 12-10-2018 ALFP_3178 3254e196b9c735b1133e6af4e15078dc 231 SUPERFAMILY SSF160950 1 228 1.96E-67 T 12-10-2018 IPR036268 ZapD domain superfamily ALFP_3178 3254e196b9c735b1133e6af4e15078dc 231 Pfam PF07072 Cell division protein 1 204 5.2E-69 T 12-10-2018 IPR009777 Cell division protein ZapD ALFP_3178 3254e196b9c735b1133e6af4e15078dc 231 Gene3D G3DSA:1.10.3900.10 1 156 8.2E-68 T 12-10-2018 ALFP_3178 3254e196b9c735b1133e6af4e15078dc 231 Gene3D G3DSA:2.60.440.10 157 228 8.2E-68 T 12-10-2018 IPR027462 Z ring-associated protein D, C-terminal ALFP_2507 779cf8964c380cc0e5b7de80078b61f1 497 Pfam PF00171 Aldehyde dehydrogenase family 17 479 1.9E-136 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_2507 779cf8964c380cc0e5b7de80078b61f1 497 Gene3D G3DSA:3.40.605.10 26 460 6.3E-144 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_2507 779cf8964c380cc0e5b7de80078b61f1 497 SUPERFAMILY SSF53720 4 483 1.31E-143 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_2507 779cf8964c380cc0e5b7de80078b61f1 497 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 8 483 6.1E-207 T 12-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 ALFP_2507 779cf8964c380cc0e5b7de80078b61f1 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 277 288 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 ALFP_2507 779cf8964c380cc0e5b7de80078b61f1 497 Gene3D G3DSA:3.40.309.10 252 452 6.3E-144 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_2366 a5e2cda6821e56f200d38b8afa12ae1a 917 Pfam PF08722 TnsA endonuclease N terminal 75 150 5.1E-9 T 12-10-2018 IPR014833 TnsA endonuclease, N-terminal ALFP_2366 a5e2cda6821e56f200d38b8afa12ae1a 917 Pfam PF09299 Mu transposase, C-terminal 726 775 1.4E-8 T 12-10-2018 IPR015378 Transposase-like, Mu, C-terminal ALFP_2366 a5e2cda6821e56f200d38b8afa12ae1a 917 SUPERFAMILY SSF53098 506 690 3.49E-19 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily ALFP_2366 a5e2cda6821e56f200d38b8afa12ae1a 917 Gene3D G3DSA:3.30.420.10 502 706 7.7E-26 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 ALFP_2366 a5e2cda6821e56f200d38b8afa12ae1a 917 SUPERFAMILY SSF50610 720 775 9.94E-5 T 12-10-2018 IPR009004 Transposase, Mu, C-terminal ALFP_2366 a5e2cda6821e56f200d38b8afa12ae1a 917 Pfam PF00665 Integrase core domain 507 629 3.6E-17 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 ALFP_0317 d9145ce72b1263faf91db0832f84c10b 287 PIRSF PIRSF006232 1 287 1.5E-68 T 12-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 ALFP_0317 d9145ce72b1263faf91db0832f84c10b 287 Pfam PF02678 Pirin 23 127 1.1E-20 T 12-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 ALFP_0317 d9145ce72b1263faf91db0832f84c10b 287 Gene3D G3DSA:2.60.120.10 22 279 7.7E-65 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_0317 d9145ce72b1263faf91db0832f84c10b 287 Pfam PF05726 Pirin C-terminal cupin domain 183 284 5.6E-29 T 12-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 ALFP_0317 d9145ce72b1263faf91db0832f84c10b 287 Gene3D G3DSA:2.60.120.10 149 253 7.7E-65 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_0317 d9145ce72b1263faf91db0832f84c10b 287 SUPERFAMILY SSF51182 11 285 5.25E-61 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_0119 0cdadcafbd876a197331913c7f34bb48 721 Gene3D G3DSA:3.20.20.360 7 577 2.4E-274 T 12-10-2018 ALFP_0119 0cdadcafbd876a197331913c7f34bb48 721 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 4 718 0.0 T 12-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 ALFP_0119 0cdadcafbd876a197331913c7f34bb48 721 Hamap MF_00641 Malate synthase G [glcB]. 1 721 386.871 T 12-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 ALFP_0119 0cdadcafbd876a197331913c7f34bb48 721 Gene3D G3DSA:2.170.170.11 135 264 2.4E-274 T 12-10-2018 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 ALFP_0119 0cdadcafbd876a197331913c7f34bb48 721 Gene3D G3DSA:1.20.1220.12 580 721 2.5E-73 T 12-10-2018 ALFP_0119 0cdadcafbd876a197331913c7f34bb48 721 SUPERFAMILY SSF51645 3 718 8.5E-296 T 12-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 ALFP_0119 0cdadcafbd876a197331913c7f34bb48 721 Pfam PF01274 Malate synthase 18 694 1.7E-172 T 12-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 ALFP_0528 9aa99d508a972db8dfc270a1d75e8d56 437 Gene3D G3DSA:3.40.50.80 313 437 6.9E-13 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_0528 9aa99d508a972db8dfc270a1d75e8d56 437 SUPERFAMILY SSF52343 299 420 2.1E-13 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_0528 9aa99d508a972db8dfc270a1d75e8d56 437 Pfam PF01794 Ferric reductase like transmembrane component 43 172 9.3E-21 T 12-10-2018 IPR013130 Ferric reductase transmembrane component-like domain ALFP_0528 9aa99d508a972db8dfc270a1d75e8d56 437 Gene3D G3DSA:2.40.30.10 216 306 4.4E-14 T 12-10-2018 ALFP_0528 9aa99d508a972db8dfc270a1d75e8d56 437 SUPERFAMILY SSF63380 227 309 4.99E-17 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_0528 9aa99d508a972db8dfc270a1d75e8d56 437 Pfam PF08022 FAD-binding domain 226 294 1.1E-9 T 12-10-2018 IPR013112 FAD-binding 8 GO:0016491|GO:0055114 ALFP_2038 18cb79e39f4320809c465abb86b71bd9 246 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 246 37.076 T 12-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 ALFP_2038 18cb79e39f4320809c465abb86b71bd9 246 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 233 2.4E-63 T 12-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 ALFP_2038 18cb79e39f4320809c465abb86b71bd9 246 Pfam PF01975 Survival protein SurE 3 182 5.5E-59 T 12-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 ALFP_2038 18cb79e39f4320809c465abb86b71bd9 246 SUPERFAMILY SSF64167 1 245 2.88E-83 T 12-10-2018 ALFP_2038 18cb79e39f4320809c465abb86b71bd9 246 Gene3D G3DSA:3.40.1210.10 1 246 4.9E-91 T 12-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 ALFP_2594 a3617f378ed97f5517c3f12700b27b9f 246 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 7 246 58.2 T 12-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_2594 a3617f378ed97f5517c3f12700b27b9f 246 Pfam PF00121 Triosephosphate isomerase 10 244 1.5E-88 T 12-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_2594 a3617f378ed97f5517c3f12700b27b9f 246 ProSitePatterns PS00171 Triosephosphate isomerase active site. 169 179 - T 12-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_2594 a3617f378ed97f5517c3f12700b27b9f 246 SUPERFAMILY SSF51351 7 245 4.58E-88 T 12-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_2594 a3617f378ed97f5517c3f12700b27b9f 246 Gene3D G3DSA:3.20.20.70 1 246 3.1E-96 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_2594 a3617f378ed97f5517c3f12700b27b9f 246 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 10 237 9.8E-66 T 12-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0190 db3eec5f16701babbf49372f52391682 211 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 36 197 1.6E-15 T 12-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component ALFP_0190 db3eec5f16701babbf49372f52391682 211 SUPERFAMILY SSF159594 34 204 1.02E-32 T 12-10-2018 ALFP_0190 db3eec5f16701babbf49372f52391682 211 Gene3D G3DSA:3.40.50.10610 25 209 1.6E-40 T 12-10-2018 ALFP_0559 0c7326a478aede546506884e04a5c7ef 292 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 230 245 7.7E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_0559 0c7326a478aede546506884e04a5c7ef 292 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 245 261 7.7E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_0559 0c7326a478aede546506884e04a5c7ef 292 SMART SM00448 15 130 4.8E-9 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_0559 0c7326a478aede546506884e04a5c7ef 292 Gene3D G3DSA:1.10.10.60 212 268 1.7E-14 T 12-10-2018 ALFP_0559 0c7326a478aede546506884e04a5c7ef 292 Pfam PF12833 Helix-turn-helix domain 184 262 1.5E-19 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0559 0c7326a478aede546506884e04a5c7ef 292 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 215 257 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ALFP_0559 0c7326a478aede546506884e04a5c7ef 292 SMART SM00342 178 261 2.9E-23 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0559 0c7326a478aede546506884e04a5c7ef 292 Gene3D G3DSA:3.40.50.2300 3 140 6.3E-17 T 12-10-2018 ALFP_0559 0c7326a478aede546506884e04a5c7ef 292 SUPERFAMILY SSF52172 11 142 1.85E-18 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_0559 0c7326a478aede546506884e04a5c7ef 292 Pfam PF00072 Response regulator receiver domain 21 131 4.7E-9 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_0559 0c7326a478aede546506884e04a5c7ef 292 Gene3D G3DSA:1.10.10.60 154 211 6.6E-9 T 12-10-2018 ALFP_0559 0c7326a478aede546506884e04a5c7ef 292 SUPERFAMILY SSF46689 215 264 4.93E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2909 d8dcf3cd73fd5fa36accf6f8fadbe6f8 204 SUPERFAMILY SSF53448 10 197 6.98E-26 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_2909 d8dcf3cd73fd5fa36accf6f8fadbe6f8 204 Gene3D G3DSA:3.90.550.10 7 201 5.4E-42 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_2909 d8dcf3cd73fd5fa36accf6f8fadbe6f8 204 Pfam PF12804 MobA-like NTP transferase domain 12 173 1.3E-30 T 12-10-2018 IPR025877 MobA-like NTP transferase ALFP_1018 1dd835ab45ec8ee1e247d0d96249e31e 382 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 12-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 ALFP_1018 1dd835ab45ec8ee1e247d0d96249e31e 382 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 260 280 - T 12-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 ALFP_1018 1dd835ab45ec8ee1e247d0d96249e31e 382 SUPERFAMILY SSF56796 4 379 3.01E-127 T 12-10-2018 ALFP_1018 1dd835ab45ec8ee1e247d0d96249e31e 382 Gene3D G3DSA:3.40.50.1970 2 184 1.7E-55 T 12-10-2018 ALFP_1018 1dd835ab45ec8ee1e247d0d96249e31e 382 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 370 3.1E-121 T 12-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 ALFP_1018 1dd835ab45ec8ee1e247d0d96249e31e 382 Gene3D G3DSA:1.20.1090.10 186 380 5.4E-71 T 12-10-2018 ALFP_2204 a1921b6446251b3862970dcbb5fa4d97 313 Pfam PF03466 LysR substrate binding domain 97 301 1.0E-22 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_2204 a1921b6446251b3862970dcbb5fa4d97 313 Gene3D G3DSA:3.40.190.10 174 273 1.3E-57 T 12-10-2018 ALFP_2204 a1921b6446251b3862970dcbb5fa4d97 313 SUPERFAMILY SSF46785 7 86 4.22E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2204 a1921b6446251b3862970dcbb5fa4d97 313 Gene3D G3DSA:3.40.190.10 93 298 1.3E-57 T 12-10-2018 ALFP_2204 a1921b6446251b3862970dcbb5fa4d97 313 SUPERFAMILY SSF53850 93 300 1.57E-38 T 12-10-2018 ALFP_2204 a1921b6446251b3862970dcbb5fa4d97 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 9.0E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2204 a1921b6446251b3862970dcbb5fa4d97 313 Gene3D G3DSA:1.10.10.10 1 91 1.6E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3372 74a5289ff0874ce746942b37f801a6c7 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_3372 74a5289ff0874ce746942b37f801a6c7 257 SUPERFAMILY SSF51735 10 250 2.59E-52 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3372 74a5289ff0874ce746942b37f801a6c7 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 3.2E-18 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3372 74a5289ff0874ce746942b37f801a6c7 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 3.2E-18 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3372 74a5289ff0874ce746942b37f801a6c7 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 3.2E-18 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3372 74a5289ff0874ce746942b37f801a6c7 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 3.2E-18 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3372 74a5289ff0874ce746942b37f801a6c7 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 3.2E-18 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3372 74a5289ff0874ce746942b37f801a6c7 257 Pfam PF00106 short chain dehydrogenase 12 195 3.4E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3372 74a5289ff0874ce746942b37f801a6c7 257 Gene3D G3DSA:3.40.50.720 12 245 4.0E-50 T 12-10-2018 ALFP_3481 35cfa1089fcc726cd493adc660d158f5 471 SUPERFAMILY SSF103473 13 466 9.16E-40 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_3481 35cfa1089fcc726cd493adc660d158f5 471 Gene3D G3DSA:1.20.1720.10 21 250 6.8E-28 T 12-10-2018 ALFP_3481 35cfa1089fcc726cd493adc660d158f5 471 Gene3D G3DSA:1.20.1250.20 278 470 2.4E-8 T 12-10-2018 ALFP_3481 35cfa1089fcc726cd493adc660d158f5 471 Pfam PF07690 Major Facilitator Superfamily 26 418 1.8E-32 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_2414 5e4092997c8a5fd7f0e95bcf80dad517 230 Gene3D G3DSA:1.10.3720.10 14 225 1.0E-47 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2414 5e4092997c8a5fd7f0e95bcf80dad517 230 TIGRFAM TIGR03003 ectoine_ehuD: ectoine/hydroxyectoine ABC transporter, permease protein EhuD 6 222 9.4E-85 T 12-10-2018 IPR014341 Ectoine/hydroxyectoine ABC transporter, permease protein EhuD ALFP_2414 5e4092997c8a5fd7f0e95bcf80dad517 230 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 20 117 4.8E-27 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 ALFP_2414 5e4092997c8a5fd7f0e95bcf80dad517 230 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 43 222 5.9E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_2414 5e4092997c8a5fd7f0e95bcf80dad517 230 SUPERFAMILY SSF161098 21 208 4.06E-39 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1266 048e857012da556a4df804a29d1aafee 349 Gene3D G3DSA:3.40.190.10 164 266 7.2E-53 T 12-10-2018 ALFP_1266 048e857012da556a4df804a29d1aafee 349 Pfam PF03466 LysR substrate binding domain 89 295 1.7E-37 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1266 048e857012da556a4df804a29d1aafee 349 Gene3D G3DSA:1.10.10.10 3 90 9.4E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1266 048e857012da556a4df804a29d1aafee 349 Gene3D G3DSA:3.40.190.10 92 292 7.2E-53 T 12-10-2018 ALFP_1266 048e857012da556a4df804a29d1aafee 349 SUPERFAMILY SSF53850 90 296 4.34E-39 T 12-10-2018 ALFP_1266 048e857012da556a4df804a29d1aafee 349 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 63 5.2E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1266 048e857012da556a4df804a29d1aafee 349 SUPERFAMILY SSF46785 3 113 2.72E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0513 b22eb38c15685256848a0d288c44f7ee 269 SUPERFAMILY SSF56300 1 261 3.19E-52 T 12-10-2018 ALFP_0513 b22eb38c15685256848a0d288c44f7ee 269 Gene3D G3DSA:3.60.21.10 1 258 6.3E-67 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like ALFP_0513 b22eb38c15685256848a0d288c44f7ee 269 Pfam PF00149 Calcineurin-like phosphoesterase 1 193 2.5E-16 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 ALFP_0513 b22eb38c15685256848a0d288c44f7ee 269 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 1 250 31.705 T 12-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 ALFP_1743 7cee1ffb5bff5755b3a611be6052ea62 311 Pfam PF00795 Carbon-nitrogen hydrolase 7 282 3.5E-52 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 ALFP_1743 7cee1ffb5bff5755b3a611be6052ea62 311 Gene3D G3DSA:3.60.110.10 2 302 4.1E-104 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily ALFP_1743 7cee1ffb5bff5755b3a611be6052ea62 311 SUPERFAMILY SSF56317 3 300 5.23E-71 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily ALFP_1552 e48f33e0a358ced1720c65b3854d0a0b 682 Pfam PF04632 Fusaric acid resistance protein family 15 669 4.6E-125 T 12-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 ALFP_0551 1012c2a1f40ffef8851477d32d8b99db 211 Pfam PF00857 Isochorismatase family 13 204 2.4E-43 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 ALFP_0551 1012c2a1f40ffef8851477d32d8b99db 211 Gene3D G3DSA:3.40.50.850 8 211 7.0E-65 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_0551 1012c2a1f40ffef8851477d32d8b99db 211 SUPERFAMILY SSF52499 7 207 1.83E-59 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_1219 0f7b9186602462ea87870ac62d533578 254 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 124 138 5.5E-30 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 ALFP_1219 0f7b9186602462ea87870ac62d533578 254 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 174 186 5.5E-30 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 ALFP_1219 0f7b9186602462ea87870ac62d533578 254 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 112 124 5.5E-30 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 ALFP_1219 0f7b9186602462ea87870ac62d533578 254 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 52 61 5.5E-30 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 ALFP_1219 0f7b9186602462ea87870ac62d533578 254 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 242 252 5.5E-30 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 ALFP_1219 0f7b9186602462ea87870ac62d533578 254 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 152 164 5.5E-30 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 ALFP_1219 0f7b9186602462ea87870ac62d533578 254 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 202 223 6.3E-65 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 ALFP_1219 0f7b9186602462ea87870ac62d533578 254 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 73 93 6.3E-65 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 ALFP_1219 0f7b9186602462ea87870ac62d533578 254 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 93 112 6.3E-65 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 ALFP_1219 0f7b9186602462ea87870ac62d533578 254 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 226 251 6.3E-65 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 ALFP_1219 0f7b9186602462ea87870ac62d533578 254 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 54 73 6.3E-65 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 ALFP_1219 0f7b9186602462ea87870ac62d533578 254 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 181 201 6.3E-65 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 ALFP_1219 0f7b9186602462ea87870ac62d533578 254 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 229 241 - T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 ALFP_1219 0f7b9186602462ea87870ac62d533578 254 Pfam PF00813 FliP family 56 248 2.9E-79 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 ALFP_1219 0f7b9186602462ea87870ac62d533578 254 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 181 196 - T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 ALFP_1219 0f7b9186602462ea87870ac62d533578 254 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 56 252 4.8E-91 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 ALFP_3179 b040067a2dcb14dd30583834af5aa184 200 Pfam PF01121 Dephospho-CoA kinase 3 179 8.1E-55 T 12-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 ALFP_3179 b040067a2dcb14dd30583834af5aa184 200 SUPERFAMILY SSF52540 2 195 1.97E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3179 b040067a2dcb14dd30583834af5aa184 200 Gene3D G3DSA:3.40.50.300 1 199 7.8E-62 T 12-10-2018 ALFP_3179 b040067a2dcb14dd30583834af5aa184 200 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 181 4.8E-44 T 12-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 ALFP_3179 b040067a2dcb14dd30583834af5aa184 200 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 194 25.88 T 12-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 ALFP_1191 06f5e4b5035c59f080fe3586d255a259 213 SUPERFAMILY SSF75708 14 212 4.71E-61 T 12-10-2018 ALFP_1191 06f5e4b5035c59f080fe3586d255a259 213 PIRSF PIRSF002884 3 213 1.7E-76 T 12-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 ALFP_1191 06f5e4b5035c59f080fe3586d255a259 213 Gene3D G3DSA:1.10.287.500 37 170 6.6E-50 T 12-10-2018 ALFP_1191 06f5e4b5035c59f080fe3586d255a259 213 Pfam PF04344 Chemotaxis phosphatase, CheZ 19 213 2.9E-71 T 12-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 ALFP_0987 d34767ebde713936b7b70d7680c3aa37 356 SUPERFAMILY SSF56317 5 306 5.76E-67 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily ALFP_0987 d34767ebde713936b7b70d7680c3aa37 356 Gene3D G3DSA:3.60.110.10 1 291 8.4E-91 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily ALFP_0987 d34767ebde713936b7b70d7680c3aa37 356 Pfam PF00795 Carbon-nitrogen hydrolase 8 286 1.8E-57 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 ALFP_0987 d34767ebde713936b7b70d7680c3aa37 356 ProSitePatterns PS00921 Nitrilases / cyanide hydratase active site signature. 159 172 - T 12-10-2018 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 ALFP_0987 d34767ebde713936b7b70d7680c3aa37 356 ProSitePatterns PS00920 Nitrilases / cyanide hydratase signature 1. 39 54 - T 12-10-2018 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 ALFP_2143 0ab148a3dc6a5771d47877cef307c4ab 257 Gene3D G3DSA:3.30.1150.10 172 256 6.6E-21 T 12-10-2018 ALFP_2143 0ab148a3dc6a5771d47877cef307c4ab 257 PRINTS PR01217 Proline rich extensin signature 61 73 2.0E-9 T 12-10-2018 ALFP_2143 0ab148a3dc6a5771d47877cef307c4ab 257 PRINTS PR01217 Proline rich extensin signature 79 95 2.0E-9 T 12-10-2018 ALFP_2143 0ab148a3dc6a5771d47877cef307c4ab 257 PRINTS PR01217 Proline rich extensin signature 105 117 2.0E-9 T 12-10-2018 ALFP_2143 0ab148a3dc6a5771d47877cef307c4ab 257 PRINTS PR01217 Proline rich extensin signature 118 139 2.0E-9 T 12-10-2018 ALFP_2143 0ab148a3dc6a5771d47877cef307c4ab 257 SUPERFAMILY SSF74653 178 255 1.7E-22 T 12-10-2018 ALFP_2143 0ab148a3dc6a5771d47877cef307c4ab 257 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 181 255 5.7E-22 T 12-10-2018 IPR006260 TonB/TolA, C-terminal ALFP_2143 0ab148a3dc6a5771d47877cef307c4ab 257 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 181 255 2.1E-23 T 12-10-2018 IPR037682 TonB, C-terminal GO:0055085 ALFP_0213 ffc2ec40d15e278d0049847ed1b8bcd9 267 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 98 112 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_0213 ffc2ec40d15e278d0049847ed1b8bcd9 267 SUPERFAMILY SSF55120 43 261 2.08E-48 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_0213 ffc2ec40d15e278d0049847ed1b8bcd9 267 Pfam PF00849 RNA pseudouridylate synthase 60 210 1.4E-22 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_0213 ffc2ec40d15e278d0049847ed1b8bcd9 267 Gene3D G3DSA:3.30.2350.10 43 262 2.1E-43 T 12-10-2018 ALFP_0599 b1b46a3b1c5ed803a79c1b2d7c985a29 176 Pfam PF09349 OHCU decarboxylase 17 171 1.1E-49 T 12-10-2018 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 ALFP_0599 b1b46a3b1c5ed803a79c1b2d7c985a29 176 SUPERFAMILY SSF158694 12 175 1.44E-54 T 12-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 ALFP_0599 b1b46a3b1c5ed803a79c1b2d7c985a29 176 TIGRFAM TIGR03164 UHCUDC: OHCU decarboxylase 19 174 6.2E-65 T 12-10-2018 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 GO:0019428 KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 ALFP_0599 b1b46a3b1c5ed803a79c1b2d7c985a29 176 Gene3D G3DSA:1.10.3330.10 11 176 4.2E-63 T 12-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 ALFP_1800 4d3cd9c3d53a1d73fda95a307409ac72 566 Gene3D G3DSA:3.40.630.10 259 548 7.3E-26 T 12-10-2018 ALFP_1800 4d3cd9c3d53a1d73fda95a307409ac72 566 Pfam PF00246 Zinc carboxypeptidase 268 445 4.9E-16 T 12-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 ALFP_1800 4d3cd9c3d53a1d73fda95a307409ac72 566 SMART SM00631 260 527 1.8E-4 T 12-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 ALFP_1800 4d3cd9c3d53a1d73fda95a307409ac72 566 SUPERFAMILY SSF53187 256 521 1.36E-29 T 12-10-2018 ALFP_2128 a8e54910bc66feca8dbbf079aaa4522a 528 Pfam PF00361 Proton-conducting membrane transporter 121 422 6.7E-32 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_0153 c8946066cd75951a0778d76cfe22aba6 467 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 17 460 7.3E-115 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 ALFP_0153 c8946066cd75951a0778d76cfe22aba6 467 Gene3D G3DSA:1.10.10.60 403 461 1.2E-20 T 12-10-2018 ALFP_0153 c8946066cd75951a0778d76cfe22aba6 467 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 349 368 - T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 ALFP_0153 c8946066cd75951a0778d76cfe22aba6 467 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 441 448 - T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 ALFP_0153 c8946066cd75951a0778d76cfe22aba6 467 Pfam PF04963 Sigma-54 factor, core binding domain 105 290 6.3E-41 T 12-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 ALFP_0153 c8946066cd75951a0778d76cfe22aba6 467 PRINTS PR00045 Sigma-54 factor signature 436 454 8.3E-26 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 ALFP_0153 c8946066cd75951a0778d76cfe22aba6 467 PRINTS PR00045 Sigma-54 factor signature 361 373 8.3E-26 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 ALFP_0153 c8946066cd75951a0778d76cfe22aba6 467 PRINTS PR00045 Sigma-54 factor signature 377 388 8.3E-26 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 ALFP_0153 c8946066cd75951a0778d76cfe22aba6 467 PRINTS PR00045 Sigma-54 factor signature 175 192 8.3E-26 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 ALFP_0153 c8946066cd75951a0778d76cfe22aba6 467 Pfam PF04552 Sigma-54, DNA binding domain 307 460 5.4E-56 T 12-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding ALFP_0153 c8946066cd75951a0778d76cfe22aba6 467 PIRSF PIRSF000774 7 463 2.0E-124 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 ALFP_0153 c8946066cd75951a0778d76cfe22aba6 467 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 12 56 5.1E-16 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 ALFP_0153 c8946066cd75951a0778d76cfe22aba6 467 Gene3D G3DSA:1.10.10.1330 105 228 3.4E-18 T 12-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily ALFP_0946 d28e9800241b06a68b648f9f736ccb84 731 Gene3D G3DSA:2.40.170.20 191 731 6.5E-78 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_0946 d28e9800241b06a68b648f9f736ccb84 731 Pfam PF00593 TonB dependent receptor 298 728 8.8E-41 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_0946 d28e9800241b06a68b648f9f736ccb84 731 Gene3D G3DSA:2.170.130.10 74 190 8.3E-19 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_0946 d28e9800241b06a68b648f9f736ccb84 731 Pfam PF07715 TonB-dependent Receptor Plug Domain 77 175 7.1E-12 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_0946 d28e9800241b06a68b648f9f736ccb84 731 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 79 731 6.1E-101 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 ALFP_0946 d28e9800241b06a68b648f9f736ccb84 731 SUPERFAMILY SSF56935 28 731 5.65E-102 T 12-10-2018 ALFP_0946 d28e9800241b06a68b648f9f736ccb84 731 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 714 731 - T 12-10-2018 IPR010917 TonB-dependent receptor, conserved site ALFP_0255 36056e819ec3a491effd32bba34f28a2 220 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 75 129 1.0E-15 T 12-10-2018 ALFP_0255 36056e819ec3a491effd32bba34f28a2 220 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 71 86 - T 12-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 ALFP_0255 36056e819ec3a491effd32bba34f28a2 220 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 27 202 1.7E-53 T 12-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 ALFP_0255 36056e819ec3a491effd32bba34f28a2 220 PIRSF PIRSF016262 1 219 8.0E-56 T 12-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 ALFP_0255 36056e819ec3a491effd32bba34f28a2 220 SUPERFAMILY SSF55681 13 211 9.94E-63 T 12-10-2018 ALFP_0255 36056e819ec3a491effd32bba34f28a2 220 Hamap MF_00013 Octanoyltransferase [lipB]. 7 214 36.238 T 12-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 ALFP_0255 36056e819ec3a491effd32bba34f28a2 220 Pfam PF03099 Biotin/lipoate A/B protein ligase family 58 167 2.6E-6 T 12-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 ALFP_0255 36056e819ec3a491effd32bba34f28a2 220 Gene3D G3DSA:3.30.930.10 2 212 1.8E-59 T 12-10-2018 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 Pfam PF04561 RNA polymerase Rpb2, domain 2 361 460 1.7E-15 T 12-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 Pfam PF04561 RNA polymerase Rpb2, domain 2 155 227 5.2E-7 T 12-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 Pfam PF00562 RNA polymerase Rpb2, domain 6 724 1292 4.6E-155 T 12-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 Gene3D G3DSA:3.90.1110.10 323 447 5.2E-30 T 12-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1366 0.0 T 12-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 Gene3D G3DSA:3.90.1100.10 649 719 2.1E-21 T 12-10-2018 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 Gene3D G3DSA:3.90.1100.10 18 174 1.2E-54 T 12-10-2018 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 Pfam PF04565 RNA polymerase Rpb2, domain 3 519 586 1.2E-31 T 12-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 SUPERFAMILY SSF64484 12 1368 0.0 T 12-10-2018 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1370 12.24 T 12-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 Gene3D G3DSA:2.40.270.10 1054 1270 8.9E-83 T 12-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 Pfam PF04560 RNA polymerase Rpb2, domain 7 1294 1368 1.1E-25 T 12-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 Gene3D G3DSA:2.40.50.100 720 794 2.1E-27 T 12-10-2018 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 Gene3D G3DSA:3.90.1100.10 448 630 2.6E-71 T 12-10-2018 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 Gene3D G3DSA:2.40.270.10 796 838 1.2E-6 T 12-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1082 1094 - T 12-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 Gene3D G3DSA:3.90.1800.10 1280 1362 9.0E-11 T 12-10-2018 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 Pfam PF10385 RNA polymerase beta subunit external 1 domain 597 662 3.6E-24 T 12-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 Pfam PF04563 RNA polymerase beta subunit 26 506 5.7E-39 T 12-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3681 188b8c11c3e60f0f75e62a83a2dcd192 1370 Gene3D G3DSA:2.40.50.150 839 956 3.0E-42 T 12-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_1510 d4726e0490451225d8cb6fa5c090ee2a 268 SMART SM00342 176 258 2.2E-21 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1510 d4726e0490451225d8cb6fa5c090ee2a 268 Gene3D G3DSA:1.10.10.60 162 263 8.3E-20 T 12-10-2018 ALFP_1510 d4726e0490451225d8cb6fa5c090ee2a 268 Gene3D G3DSA:2.60.120.10 17 94 1.4E-5 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_1510 d4726e0490451225d8cb6fa5c090ee2a 268 Pfam PF02311 AraC-like ligand binding domain 21 124 6.7E-8 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 ALFP_1510 d4726e0490451225d8cb6fa5c090ee2a 268 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 227 242 4.7E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_1510 d4726e0490451225d8cb6fa5c090ee2a 268 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 242 258 4.7E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_1510 d4726e0490451225d8cb6fa5c090ee2a 268 SUPERFAMILY SSF51182 22 179 2.09E-13 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_1510 d4726e0490451225d8cb6fa5c090ee2a 268 SUPERFAMILY SSF46689 221 260 3.36E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1510 d4726e0490451225d8cb6fa5c090ee2a 268 Pfam PF12833 Helix-turn-helix domain 182 259 1.6E-19 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1510 d4726e0490451225d8cb6fa5c090ee2a 268 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 213 254 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ALFP_2680 50e5bc223f5273b30a7a727dfeffb757 391 Pfam PF07690 Major Facilitator Superfamily 6 344 8.2E-41 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_2680 50e5bc223f5273b30a7a727dfeffb757 391 Gene3D G3DSA:1.20.1720.10 1 383 6.0E-87 T 12-10-2018 ALFP_2680 50e5bc223f5273b30a7a727dfeffb757 391 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 1 378 5.7E-65 T 12-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 ALFP_2680 50e5bc223f5273b30a7a727dfeffb757 391 SUPERFAMILY SSF103473 2 383 4.58E-55 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_1715 6b41a360c7c5f2bcb5f0cc124a194540 600 ProSitePatterns PS00211 ABC transporters family signature. 497 511 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1715 6b41a360c7c5f2bcb5f0cc124a194540 600 Gene3D G3DSA:1.20.1560.10 33 350 4.6E-117 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_1715 6b41a360c7c5f2bcb5f0cc124a194540 600 SMART SM00382 385 577 4.4E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1715 6b41a360c7c5f2bcb5f0cc124a194540 600 SUPERFAMILY SSF52540 351 595 5.94E-95 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1715 6b41a360c7c5f2bcb5f0cc124a194540 600 SUPERFAMILY SSF90123 30 343 4.71E-65 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_1715 6b41a360c7c5f2bcb5f0cc124a194540 600 Gene3D G3DSA:3.40.50.300 351 599 1.4E-96 T 12-10-2018 ALFP_1715 6b41a360c7c5f2bcb5f0cc124a194540 600 Pfam PF00005 ABC transporter 377 525 3.1E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1715 6b41a360c7c5f2bcb5f0cc124a194540 600 Pfam PF00664 ABC transporter transmembrane region 42 314 1.1E-38 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 ALFP_1879 453b5f14ebabe9a163fef180eadf1d0f 347 Gene3D G3DSA:3.40.190.10 34 307 6.9E-121 T 12-10-2018 ALFP_1879 453b5f14ebabe9a163fef180eadf1d0f 347 Pfam PF13343 Bacterial extracellular solute-binding protein 79 306 7.2E-19 T 12-10-2018 ALFP_1879 453b5f14ebabe9a163fef180eadf1d0f 347 Gene3D G3DSA:3.40.190.10 127 340 6.9E-121 T 12-10-2018 ALFP_1879 453b5f14ebabe9a163fef180eadf1d0f 347 SUPERFAMILY SSF53850 30 344 2.65E-72 T 12-10-2018 ALFP_1879 453b5f14ebabe9a163fef180eadf1d0f 347 PIRSF PIRSF002825 3 347 2.6E-80 T 12-10-2018 IPR026045 Ferric binding protein ALFP_1254 21dc153851aa8eb6bb4af6733acd7e02 551 SUPERFAMILY SSF58104 250 526 1.29E-65 T 12-10-2018 ALFP_1254 21dc153851aa8eb6bb4af6733acd7e02 551 SUPERFAMILY SSF55785 21 114 8.2E-27 T 12-10-2018 IPR035965 PAS domain superfamily ALFP_1254 21dc153851aa8eb6bb4af6733acd7e02 551 Gene3D G3DSA:1.10.287.950 223 525 1.3E-74 T 12-10-2018 ALFP_1254 21dc153851aa8eb6bb4af6733acd7e02 551 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 113 6.7E-15 T 12-10-2018 IPR000014 PAS domain ALFP_1254 21dc153851aa8eb6bb4af6733acd7e02 551 Pfam PF08447 PAS fold 30 114 7.2E-15 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 ALFP_1254 21dc153851aa8eb6bb4af6733acd7e02 551 Gene3D G3DSA:3.30.450.20 1 116 1.6E-24 T 12-10-2018 ALFP_1254 21dc153851aa8eb6bb4af6733acd7e02 551 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 337 492 7.1E-51 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 ALFP_1254 21dc153851aa8eb6bb4af6733acd7e02 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 299 328 3.1E-46 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1254 21dc153851aa8eb6bb4af6733acd7e02 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 405 434 3.1E-46 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1254 21dc153851aa8eb6bb4af6733acd7e02 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 376 403 3.1E-46 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1254 21dc153851aa8eb6bb4af6733acd7e02 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 453 482 3.1E-46 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1254 21dc153851aa8eb6bb4af6733acd7e02 551 SMART SM00283 278 525 9.3E-68 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 ALFP_1820 3d50ae98c61361931b2300d52dfa9b6c 204 SUPERFAMILY SSF51182 99 196 3.91E-19 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_1820 3d50ae98c61361931b2300d52dfa9b6c 204 Gene3D G3DSA:1.10.260.40 6 74 5.0E-13 T 12-10-2018 ALFP_1820 3d50ae98c61361931b2300d52dfa9b6c 204 SMART SM00530 15 70 1.1E-8 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_1820 3d50ae98c61361931b2300d52dfa9b6c 204 SUPERFAMILY SSF47413 8 72 1.15E-13 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_1820 3d50ae98c61361931b2300d52dfa9b6c 204 Gene3D G3DSA:2.60.120.10 89 195 2.7E-21 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_1820 3d50ae98c61361931b2300d52dfa9b6c 204 Pfam PF12844 Helix-turn-helix domain 13 76 3.9E-8 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_1820 3d50ae98c61361931b2300d52dfa9b6c 204 Pfam PF07883 Cupin domain 138 195 3.7E-9 T 12-10-2018 IPR013096 Cupin 2, conserved barrel ALFP_1256 324e62d40329d2f8f038bae7db1ea1ba 314 SUPERFAMILY SSF55811 15 126 1.07E-7 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 ALFP_1256 324e62d40329d2f8f038bae7db1ea1ba 314 Gene3D G3DSA:1.10.10.10 223 299 9.2E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1256 324e62d40329d2f8f038bae7db1ea1ba 314 PIRSF PIRSF019423 2 312 1.7E-136 T 12-10-2018 IPR011213 Nicotinic acid mononucleotide biosynthesis protein ALFP_1256 324e62d40329d2f8f038bae7db1ea1ba 314 SUPERFAMILY SSF46785 230 300 6.8E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1985 1eca2f380660e3f6545246b7e05d760a 902 Gene3D G3DSA:3.40.50.970 481 716 7.2E-104 T 12-10-2018 ALFP_1985 1eca2f380660e3f6545246b7e05d760a 902 Gene3D G3DSA:3.40.50.920 717 902 3.9E-70 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 ALFP_1985 1eca2f380660e3f6545246b7e05d760a 902 PIRSF PIRSF000156 2 902 0.0 T 12-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 ALFP_1985 1eca2f380660e3f6545246b7e05d760a 902 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 146 301 4.6E-9 T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 ALFP_1985 1eca2f380660e3f6545246b7e05d760a 902 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 15 901 0.0 T 12-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 ALFP_1985 1eca2f380660e3f6545246b7e05d760a 902 Gene3D G3DSA:3.40.50.970 62 480 9.0E-132 T 12-10-2018 ALFP_1985 1eca2f380660e3f6545246b7e05d760a 902 SUPERFAMILY SSF52922 714 900 1.14E-53 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 ALFP_1985 1eca2f380660e3f6545246b7e05d760a 902 SUPERFAMILY SSF52518 63 477 2.21E-136 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_1985 1eca2f380660e3f6545246b7e05d760a 902 SUPERFAMILY SSF52518 482 710 5.65E-93 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_1240 fbfad36e328c08b856be0ef482d87b18 367 PRINTS PR00207 Flagellin signature 36 53 1.3E-30 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 ALFP_1240 fbfad36e328c08b856be0ef482d87b18 367 PRINTS PR00207 Flagellin signature 110 133 1.3E-30 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 ALFP_1240 fbfad36e328c08b856be0ef482d87b18 367 PRINTS PR00207 Flagellin signature 75 94 1.3E-30 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 ALFP_1240 fbfad36e328c08b856be0ef482d87b18 367 Gene3D G3DSA:1.10.8.410 315 367 4.3E-24 T 12-10-2018 ALFP_1240 fbfad36e328c08b856be0ef482d87b18 367 Pfam PF00700 Bacterial flagellin C-terminal helical region 282 366 1.8E-32 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 ALFP_1240 fbfad36e328c08b856be0ef482d87b18 367 Gene3D G3DSA:1.20.1330.10 63 312 1.7E-56 T 12-10-2018 ALFP_1240 fbfad36e328c08b856be0ef482d87b18 367 SUPERFAMILY SSF64518 1 367 2.75E-105 T 12-10-2018 ALFP_1240 fbfad36e328c08b856be0ef482d87b18 367 Gene3D G3DSA:1.20.58.1830 1 62 6.4E-9 T 12-10-2018 ALFP_1240 fbfad36e328c08b856be0ef482d87b18 367 Gene3D G3DSA:3.30.70.2120 170 265 1.7E-56 T 12-10-2018 ALFP_1240 fbfad36e328c08b856be0ef482d87b18 367 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 140 9.7E-43 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 ALFP_1606 920481345dcef1d8d769b4f21bccbd02 232 Pfam PF01144 Coenzyme A transferase 22 214 1.5E-36 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 ALFP_1606 920481345dcef1d8d769b4f21bccbd02 232 SUPERFAMILY SSF100950 20 226 1.01E-63 T 12-10-2018 IPR037171 NagB/RpiA transferase-like ALFP_1606 920481345dcef1d8d769b4f21bccbd02 232 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 59 67 - T 12-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 ALFP_1606 920481345dcef1d8d769b4f21bccbd02 232 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 19 219 3.5E-86 T 12-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 ALFP_1606 920481345dcef1d8d769b4f21bccbd02 232 Gene3D G3DSA:3.40.1080.10 16 228 9.4E-81 T 12-10-2018 ALFP_1606 920481345dcef1d8d769b4f21bccbd02 232 SMART SM00882 21 218 1.0E-62 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 ALFP_0527 fde37ffe358ef5f805d282cb6412847d 202 Gene3D G3DSA:1.10.357.10 61 194 5.4E-15 T 12-10-2018 ALFP_0527 fde37ffe358ef5f805d282cb6412847d 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 1.6E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_0527 fde37ffe358ef5f805d282cb6412847d 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 1.6E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_0527 fde37ffe358ef5f805d282cb6412847d 202 SUPERFAMILY SSF48498 88 193 5.93E-6 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily ALFP_0527 fde37ffe358ef5f805d282cb6412847d 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 4.2E-18 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_0527 fde37ffe358ef5f805d282cb6412847d 202 Gene3D G3DSA:1.10.10.60 1 60 8.2E-19 T 12-10-2018 ALFP_0527 fde37ffe358ef5f805d282cb6412847d 202 SUPERFAMILY SSF46689 6 85 5.64E-21 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2401 4fbe8dfdb08d360a17640f1956523cc7 150 SUPERFAMILY SSF47175 25 147 2.65E-35 T 12-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 ALFP_2401 4fbe8dfdb08d360a17640f1956523cc7 150 PRINTS PR00608 Class II cytochrome C signature 136 147 8.5E-5 T 12-10-2018 IPR015984 Cytochrome c prime, subgroup ALFP_2401 4fbe8dfdb08d360a17640f1956523cc7 150 PRINTS PR00608 Class II cytochrome C signature 113 136 8.5E-5 T 12-10-2018 IPR015984 Cytochrome c prime, subgroup ALFP_2401 4fbe8dfdb08d360a17640f1956523cc7 150 Gene3D G3DSA:1.20.120.10 24 150 2.9E-42 T 12-10-2018 ALFP_2401 4fbe8dfdb08d360a17640f1956523cc7 150 Pfam PF01322 Cytochrome C' 30 147 2.3E-31 T 12-10-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 ALFP_2401 4fbe8dfdb08d360a17640f1956523cc7 150 PIRSF PIRSF000027 7 149 4.6E-37 T 12-10-2018 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 ALFP_3166 f91c9b334e202f1ed304d6caba648793 513 Gene3D G3DSA:1.10.8.60 355 418 1.4E-19 T 12-10-2018 ALFP_3166 f91c9b334e202f1ed304d6caba648793 513 Gene3D G3DSA:1.10.10.60 452 507 1.3E-11 T 12-10-2018 ALFP_3166 f91c9b334e202f1ed304d6caba648793 513 SUPERFAMILY SSF55781 19 165 3.93E-10 T 12-10-2018 ALFP_3166 f91c9b334e202f1ed304d6caba648793 513 SMART SM00382 204 347 9.6E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3166 f91c9b334e202f1ed304d6caba648793 513 Pfam PF00158 Sigma-54 interaction domain 184 350 8.2E-67 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 ALFP_3166 f91c9b334e202f1ed304d6caba648793 513 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 467 484 1.5E-6 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_3166 f91c9b334e202f1ed304d6caba648793 513 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 484 504 1.5E-6 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_3166 f91c9b334e202f1ed304d6caba648793 513 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 397 406 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site ALFP_3166 f91c9b334e202f1ed304d6caba648793 513 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 208 221 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 ALFP_3166 f91c9b334e202f1ed304d6caba648793 513 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 270 285 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 ALFP_3166 f91c9b334e202f1ed304d6caba648793 513 Gene3D G3DSA:3.30.450.40 8 165 1.1E-6 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_3166 f91c9b334e202f1ed304d6caba648793 513 SMART SM00065 14 163 0.0054 T 12-10-2018 IPR003018 GAF domain GO:0005515 ALFP_3166 f91c9b334e202f1ed304d6caba648793 513 SUPERFAMILY SSF46689 450 503 1.97E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_3166 f91c9b334e202f1ed304d6caba648793 513 SUPERFAMILY SSF52540 184 419 1.18E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3166 f91c9b334e202f1ed304d6caba648793 513 Pfam PF02954 Bacterial regulatory protein, Fis family 461 495 5.2E-7 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_3166 f91c9b334e202f1ed304d6caba648793 513 Gene3D G3DSA:3.40.50.300 175 354 1.7E-63 T 12-10-2018 ALFP_1383 48b12d71d5b58147d1cb9002d058c09a 196 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 68 116 3.7E-12 T 12-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 ALFP_1383 48b12d71d5b58147d1cb9002d058c09a 196 SUPERFAMILY SSF69118 10 195 1.01E-56 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 ALFP_1383 48b12d71d5b58147d1cb9002d058c09a 196 Gene3D G3DSA:1.20.1290.10 70 193 1.7E-38 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 ALFP_1383 48b12d71d5b58147d1cb9002d058c09a 196 TIGRFAM TIGR01926 peroxid_rel: uncharacterized peroxidase-related enzyme 11 187 7.5E-67 T 12-10-2018 IPR010195 Uncharacterised peroxidase-related ALFP_1383 48b12d71d5b58147d1cb9002d058c09a 196 Gene3D G3DSA:1.20.5.810 17 69 3.4E-27 T 12-10-2018 ALFP_1383 48b12d71d5b58147d1cb9002d058c09a 196 Pfam PF02627 Carboxymuconolactone decarboxylase family 50 103 3.1E-15 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 ALFP_0140 45fbcce17404a448f2dc4407e44f63d5 392 SUPERFAMILY SSF56645 6 247 1.57E-88 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 ALFP_0140 45fbcce17404a448f2dc4407e44f63d5 392 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 387 2.8E-38 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 ALFP_0140 45fbcce17404a448f2dc4407e44f63d5 392 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 346 365 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 ALFP_0140 45fbcce17404a448f2dc4407e44f63d5 392 Gene3D G3DSA:1.20.140.10 240 392 3.1E-44 T 12-10-2018 ALFP_0140 45fbcce17404a448f2dc4407e44f63d5 392 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 14 123 2.8E-38 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 ALFP_0140 45fbcce17404a448f2dc4407e44f63d5 392 PIRSF PIRSF016578 135 392 1.1E-11 T 12-10-2018 ALFP_0140 45fbcce17404a448f2dc4407e44f63d5 392 PIRSF PIRSF016578 16 104 0.048 T 12-10-2018 ALFP_0140 45fbcce17404a448f2dc4407e44f63d5 392 Gene3D G3DSA:1.10.540.10 3 125 8.3E-49 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 ALFP_0140 45fbcce17404a448f2dc4407e44f63d5 392 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 129 141 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 ALFP_0140 45fbcce17404a448f2dc4407e44f63d5 392 SUPERFAMILY SSF47203 233 388 2.42E-43 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 ALFP_0140 45fbcce17404a448f2dc4407e44f63d5 392 Gene3D G3DSA:2.40.110.10 126 239 6.8E-46 T 12-10-2018 ALFP_0140 45fbcce17404a448f2dc4407e44f63d5 392 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 222 1.1E-26 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 ALFP_0105 9c7aa702b09bd1ed5aebc8bfc6441be7 390 Gene3D G3DSA:1.10.150.20 198 264 2.4E-16 T 12-10-2018 ALFP_0105 9c7aa702b09bd1ed5aebc8bfc6441be7 390 SUPERFAMILY SSF56672 8 261 5.07E-72 T 12-10-2018 ALFP_0105 9c7aa702b09bd1ed5aebc8bfc6441be7 390 Pfam PF00817 impB/mucB/samB family 17 181 8.7E-41 T 12-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 ALFP_0105 9c7aa702b09bd1ed5aebc8bfc6441be7 390 Pfam PF11799 impB/mucB/samB family C-terminal domain 263 375 6.4E-17 T 12-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 ALFP_0105 9c7aa702b09bd1ed5aebc8bfc6441be7 390 Gene3D G3DSA:3.30.1490.100 265 386 1.1E-24 T 12-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 ALFP_0105 9c7aa702b09bd1ed5aebc8bfc6441be7 390 SUPERFAMILY SSF100879 269 374 1.37E-24 T 12-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 ALFP_0105 9c7aa702b09bd1ed5aebc8bfc6441be7 390 Hamap MF_01113 DNA polymerase IV [dinB]. 11 386 32.413 T 12-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 ALFP_0105 9c7aa702b09bd1ed5aebc8bfc6441be7 390 Gene3D G3DSA:2.30.40.20 22 102 2.9E-21 T 12-10-2018 ALFP_0105 9c7aa702b09bd1ed5aebc8bfc6441be7 390 Gene3D G3DSA:3.30.70.270 103 192 2.0E-25 T 12-10-2018 ALFP_1628 440c00a8780bc012c67b460a16784708 289 SUPERFAMILY SSF103481 180 285 1.57E-14 T 12-10-2018 ALFP_1628 440c00a8780bc012c67b460a16784708 289 SUPERFAMILY SSF103481 43 139 8.5E-12 T 12-10-2018 ALFP_1628 440c00a8780bc012c67b460a16784708 289 Pfam PF00892 EamA-like transporter family 12 136 1.8E-12 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_1628 440c00a8780bc012c67b460a16784708 289 Pfam PF00892 EamA-like transporter family 146 279 6.5E-22 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_3156 13d57db02ded581186f76d886fab70e4 506 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 16 497 2.3E-159 T 12-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_3156 13d57db02ded581186f76d886fab70e4 506 SUPERFAMILY SSF75304 7 503 4.84E-148 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_3156 13d57db02ded581186f76d886fab70e4 506 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 13 497 87.261 T 12-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_3156 13d57db02ded581186f76d886fab70e4 506 Gene3D G3DSA:3.90.1300.10 6 506 4.1E-180 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_3156 13d57db02ded581186f76d886fab70e4 506 ProSitePatterns PS00571 Amidases signature. 152 183 - T 12-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 ALFP_3156 13d57db02ded581186f76d886fab70e4 506 Pfam PF01425 Amidase 31 486 3.9E-141 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_2298 55f0c1bf3b6c51f4552915211f855ee0 299 Gene3D G3DSA:1.10.40.50 233 299 3.8E-21 T 12-10-2018 ALFP_2298 55f0c1bf3b6c51f4552915211f855ee0 299 Gene3D G3DSA:3.40.50.300 63 232 9.1E-37 T 12-10-2018 ALFP_2298 55f0c1bf3b6c51f4552915211f855ee0 299 Pfam PF03193 RsgA GTPase 60 232 1.1E-47 T 12-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 ALFP_2298 55f0c1bf3b6c51f4552915211f855ee0 299 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 41 290 7.7E-60 T 12-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 ALFP_2298 55f0c1bf3b6c51f4552915211f855ee0 299 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 6 297 33.68 T 12-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 ALFP_2298 55f0c1bf3b6c51f4552915211f855ee0 299 SUPERFAMILY SSF52540 76 295 1.68E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2298 55f0c1bf3b6c51f4552915211f855ee0 299 SUPERFAMILY SSF50249 6 64 6.85E-7 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2298 55f0c1bf3b6c51f4552915211f855ee0 299 Gene3D G3DSA:2.40.50.140 4 62 8.7E-8 T 12-10-2018 ALFP_1815 a6a439c81f7273923933a501d0dc1fd5 445 Gene3D G3DSA:3.40.50.1100 25 439 1.1E-192 T 12-10-2018 ALFP_1815 a6a439c81f7273923933a501d0dc1fd5 445 Hamap MF_01030 D-serine dehydratase [dsdA]. 1 445 255.061 T 12-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 ALFP_1815 a6a439c81f7273923933a501d0dc1fd5 445 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 75 397 6.8E-59 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme ALFP_1815 a6a439c81f7273923933a501d0dc1fd5 445 TIGRFAM TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase 14 439 2.9E-215 T 12-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 ALFP_1815 a6a439c81f7273923933a501d0dc1fd5 445 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 109 123 - T 12-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 ALFP_1815 a6a439c81f7273923933a501d0dc1fd5 445 SUPERFAMILY SSF53686 73 430 4.94E-53 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme ALFP_1815 a6a439c81f7273923933a501d0dc1fd5 445 Gene3D G3DSA:3.40.50.1100 117 239 1.1E-192 T 12-10-2018 ALFP_2354 7981287a8fef0c8a805a75e1b190ca02 219 Gene3D G3DSA:3.40.30.10 17 99 6.6E-20 T 12-10-2018 ALFP_2354 7981287a8fef0c8a805a75e1b190ca02 219 SUPERFAMILY SSF52833 8 97 1.19E-16 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_2354 7981287a8fef0c8a805a75e1b190ca02 219 SUPERFAMILY SSF47616 99 215 1.09E-20 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily ALFP_2354 7981287a8fef0c8a805a75e1b190ca02 219 Pfam PF02798 Glutathione S-transferase, N-terminal domain 19 87 2.7E-13 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 ALFP_2354 7981287a8fef0c8a805a75e1b190ca02 219 Pfam PF14497 Glutathione S-transferase, C-terminal domain 127 213 3.7E-8 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal ALFP_2354 7981287a8fef0c8a805a75e1b190ca02 219 Gene3D G3DSA:1.20.1050.10 100 207 4.1E-42 T 12-10-2018 ALFP_2179 66aa7ad4a2cc211686d3c46e39789d7d 192 Gene3D G3DSA:1.10.10.10 16 125 2.9E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2179 66aa7ad4a2cc211686d3c46e39789d7d 192 SUPERFAMILY SSF46785 23 112 3.58E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2179 66aa7ad4a2cc211686d3c46e39789d7d 192 Pfam PF03551 Transcriptional regulator PadR-like family 33 101 5.2E-14 T 12-10-2018 IPR005149 Transcription regulator PadR, N-terminal ALFP_3095 2b1b6f6c1cce4adb70ce55deee31033c 152 Pfam PF01037 Lrp/AsnC ligand binding domain 68 141 2.6E-23 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain ALFP_3095 2b1b6f6c1cce4adb70ce55deee31033c 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 2.5E-12 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 ALFP_3095 2b1b6f6c1cce4adb70ce55deee31033c 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 2.5E-12 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 ALFP_3095 2b1b6f6c1cce4adb70ce55deee31033c 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 2.5E-12 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 ALFP_3095 2b1b6f6c1cce4adb70ce55deee31033c 152 Gene3D G3DSA:3.30.70.920 54 138 8.5E-24 T 12-10-2018 ALFP_3095 2b1b6f6c1cce4adb70ce55deee31033c 152 Gene3D G3DSA:1.10.10.10 2 52 1.2E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3095 2b1b6f6c1cce4adb70ce55deee31033c 152 SUPERFAMILY SSF54909 63 150 5.23E-22 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel ALFP_3095 2b1b6f6c1cce4adb70ce55deee31033c 152 SMART SM00344 1 110 6.8E-38 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 ALFP_3095 2b1b6f6c1cce4adb70ce55deee31033c 152 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 47 9.2E-17 T 12-10-2018 ALFP_3095 2b1b6f6c1cce4adb70ce55deee31033c 152 SUPERFAMILY SSF46785 1 60 1.82E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3065 5a1be5a1db9b1ff6c5791ad32830e304 153 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 82.08 T 12-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 ALFP_3065 5a1be5a1db9b1ff6c5791ad32830e304 153 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 146 9.7E-58 T 12-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 ALFP_3065 5a1be5a1db9b1ff6c5791ad32830e304 153 Pfam PF03477 ATP cone domain 50 136 3.9E-15 T 12-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 ALFP_1343 2b2f4a18f19d5dbb4f47600b2617938f 202 SUPERFAMILY SSF52499 5 181 1.96E-42 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_1343 2b2f4a18f19d5dbb4f47600b2617938f 202 Pfam PF00857 Isochorismatase family 7 181 1.3E-36 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 ALFP_1343 2b2f4a18f19d5dbb4f47600b2617938f 202 Gene3D G3DSA:3.40.50.850 1 195 3.6E-43 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_3601 2d9173203fdf499b8363b08faee32bfe 980 Pfam PF00990 Diguanylate cyclase, GGDEF domain 534 684 1.0E-25 T 12-10-2018 IPR000160 GGDEF domain ALFP_3601 2d9173203fdf499b8363b08faee32bfe 980 Gene3D G3DSA:3.30.450.20 408 527 4.8E-5 T 12-10-2018 ALFP_3601 2d9173203fdf499b8363b08faee32bfe 980 Gene3D G3DSA:3.20.20.450 706 956 7.9E-71 T 12-10-2018 IPR035919 EAL domain superfamily ALFP_3601 2d9173203fdf499b8363b08faee32bfe 980 SUPERFAMILY SSF141868 717 951 7.98E-66 T 12-10-2018 IPR035919 EAL domain superfamily ALFP_3601 2d9173203fdf499b8363b08faee32bfe 980 SUPERFAMILY SSF55073 539 691 1.49E-28 T 12-10-2018 IPR029787 Nucleotide cyclase ALFP_3601 2d9173203fdf499b8363b08faee32bfe 980 Gene3D G3DSA:3.30.70.270 531 705 2.0E-35 T 12-10-2018 ALFP_3601 2d9173203fdf499b8363b08faee32bfe 980 SMART SM00267 522 692 7.4E-33 T 12-10-2018 IPR000160 GGDEF domain ALFP_3601 2d9173203fdf499b8363b08faee32bfe 980 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 531 687 2.4E-22 T 12-10-2018 IPR000160 GGDEF domain ALFP_3601 2d9173203fdf499b8363b08faee32bfe 980 Pfam PF00563 EAL domain 717 943 3.9E-57 T 12-10-2018 IPR001633 EAL domain ALFP_3601 2d9173203fdf499b8363b08faee32bfe 980 SMART SM00052 703 949 2.0E-62 T 12-10-2018 IPR001633 EAL domain ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 467 575 1.4E-34 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 SUPERFAMILY SSF51905 123 458 5.01E-51 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 Pfam PF00364 Biotin-requiring enzyme 5 76 1.7E-21 T 12-10-2018 IPR000089 Biotin/lipoyl attachment ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 Gene3D G3DSA:3.50.50.60 127 453 3.0E-120 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 Gene3D G3DSA:3.30.390.30 466 587 2.4E-46 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 127 448 6.5E-58 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 SUPERFAMILY SSF51230 2 95 1.06E-23 T 12-10-2018 IPR011053 Single hybrid motif ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 Gene3D G3DSA:2.40.50.100 2 80 9.6E-22 T 12-10-2018 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 126 581 2.8E-148 T 12-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 PIRSF PIRSF000350 26 585 4.0E-84 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 428 435 6.9E-69 T 12-10-2018 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 528 543 6.9E-69 T 12-10-2018 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 261 270 6.9E-69 T 12-10-2018 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 296 321 6.9E-69 T 12-10-2018 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 463 484 6.9E-69 T 12-10-2018 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 127 149 6.9E-69 T 12-10-2018 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 550 570 6.9E-69 T 12-10-2018 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 160 175 6.9E-69 T 12-10-2018 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 385 399 6.9E-69 T 12-10-2018 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 276 1.0E-37 T 12-10-2018 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 296 314 1.0E-37 T 12-10-2018 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 413 435 1.0E-37 T 12-10-2018 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 384 400 1.0E-37 T 12-10-2018 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 128 147 1.0E-37 T 12-10-2018 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 161 171 - T 12-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 Gene3D G3DSA:3.50.50.60 273 394 3.0E-120 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1983 c2b5eb1de72c8273a1ba955c7bbc3754 592 SUPERFAMILY SSF55424 463 585 4.64E-39 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 ALFP_1065 78d8085d26c2d0d11552b935f36ed858 321 Pfam PF01479 S4 domain 29 74 7.3E-12 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_1065 78d8085d26c2d0d11552b935f36ed858 321 SUPERFAMILY SSF55120 89 318 1.34E-66 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_1065 78d8085d26c2d0d11552b935f36ed858 321 SMART SM00363 28 93 1.0E-7 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_1065 78d8085d26c2d0d11552b935f36ed858 321 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 28 313 1.1E-75 T 12-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_1065 78d8085d26c2d0d11552b935f36ed858 321 Pfam PF00849 RNA pseudouridylate synthase 103 257 2.1E-32 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_1065 78d8085d26c2d0d11552b935f36ed858 321 Gene3D G3DSA:3.10.290.10 16 81 3.2E-16 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 ALFP_1065 78d8085d26c2d0d11552b935f36ed858 321 Gene3D G3DSA:3.30.2350.10 85 304 3.6E-63 T 12-10-2018 ALFP_1065 78d8085d26c2d0d11552b935f36ed858 321 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 145 159 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_1065 78d8085d26c2d0d11552b935f36ed858 321 SUPERFAMILY SSF55174 29 78 1.79E-11 T 12-10-2018 ALFP_0650 b84896524ed42f285302c3f81fc6b486 145 SUPERFAMILY SSF89872 32 137 7.98E-16 T 12-10-2018 IPR036501 Inhibitor of vertebrate lysozyme superfamily ALFP_0650 b84896524ed42f285302c3f81fc6b486 145 Pfam PF08816 Inhibitor of vertebrate lysozyme (Ivy) 39 136 1.5E-19 T 12-10-2018 ALFP_0650 b84896524ed42f285302c3f81fc6b486 145 Gene3D G3DSA:3.40.1420.10 27 141 1.2E-21 T 12-10-2018 IPR036501 Inhibitor of vertebrate lysozyme superfamily ALFP_3093 aff17fba5a723cd206bc727d804bd99d 182 Pfam PF07152 YaeQ protein 1 174 4.1E-69 T 12-10-2018 IPR009822 YaeQ ALFP_3093 aff17fba5a723cd206bc727d804bd99d 182 SUPERFAMILY SSF52980 2 178 6.17E-64 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 ALFP_3093 aff17fba5a723cd206bc727d804bd99d 182 Gene3D G3DSA:3.10.640.10 1 182 3.1E-69 T 12-10-2018 IPR038590 YaeQ superfamily ALFP_3093 aff17fba5a723cd206bc727d804bd99d 182 SMART SM01322 1 177 7.6E-99 T 12-10-2018 IPR009822 YaeQ ALFP_3093 aff17fba5a723cd206bc727d804bd99d 182 PIRSF PIRSF011484 1 181 1.8E-64 T 12-10-2018 IPR009822 YaeQ ALFP_0457 e0aefbef8a5d913f3b47132d11a9dc41 1017 SUPERFAMILY SSF52540 96 569 7.97E-8 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0457 e0aefbef8a5d913f3b47132d11a9dc41 1017 Gene3D G3DSA:3.40.50.300 421 599 1.8E-5 T 12-10-2018 ALFP_0457 e0aefbef8a5d913f3b47132d11a9dc41 1017 SUPERFAMILY SSF52540 95 269 8.82E-12 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0457 e0aefbef8a5d913f3b47132d11a9dc41 1017 Gene3D G3DSA:3.40.50.300 66 278 1.9E-11 T 12-10-2018 ALFP_0457 e0aefbef8a5d913f3b47132d11a9dc41 1017 Pfam PF04851 Type III restriction enzyme, res subunit 5 255 5.4E-14 T 12-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 ALFP_0729 8123a13d3b484d6922ad7ae6c4e57d3e 536 Gene3D G3DSA:3.40.1670.10 386 503 1.4E-49 T 12-10-2018 ALFP_0729 8123a13d3b484d6922ad7ae6c4e57d3e 536 Gene3D G3DSA:1.20.5.570 504 536 4.1E-14 T 12-10-2018 ALFP_0729 8123a13d3b484d6922ad7ae6c4e57d3e 536 SUPERFAMILY SSF50475 25 371 2.86E-111 T 12-10-2018 ALFP_0729 8123a13d3b484d6922ad7ae6c4e57d3e 536 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 32 480 1.0E-165 T 12-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 ALFP_0729 8123a13d3b484d6922ad7ae6c4e57d3e 536 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 23 536 72.486 T 12-10-2018 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 ALFP_0729 8123a13d3b484d6922ad7ae6c4e57d3e 536 SUPERFAMILY SSF143968 372 535 8.11E-66 T 12-10-2018 ALFP_0729 8123a13d3b484d6922ad7ae6c4e57d3e 536 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 327 504 6.5E-76 T 12-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 ALFP_0729 8123a13d3b484d6922ad7ae6c4e57d3e 536 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 28 304 1.5E-79 T 12-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 ALFP_2486 1dd1ca91be782bb25eaf05ff72b1732c 101 Pfam PF04977 Septum formation initiator 13 89 1.7E-22 T 12-10-2018 IPR007060 Septum formation initiator FtsL/DivIC ALFP_2486 1dd1ca91be782bb25eaf05ff72b1732c 101 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 31.115 T 12-10-2018 IPR023081 Cell division protein FtsB ALFP_3207 e360a55608b0d9dfd3e5246c64d05b49 160 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 29 94 2.9E-14 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 ALFP_3207 e360a55608b0d9dfd3e5246c64d05b49 160 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 25 159 2.7E-58 T 12-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 ALFP_3207 e360a55608b0d9dfd3e5246c64d05b49 160 SUPERFAMILY SSF52374 27 157 4.69E-23 T 12-10-2018 ALFP_3207 e360a55608b0d9dfd3e5246c64d05b49 160 Pfam PF01467 Cytidylyltransferase-like 31 124 8.3E-16 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 ALFP_3207 e360a55608b0d9dfd3e5246c64d05b49 160 Gene3D G3DSA:3.40.50.620 13 160 4.7E-34 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_2205 74c242a6aeba81a23456330835ea2ab9 497 Pfam PF01799 [2Fe-2S] binding domain 86 164 7.7E-29 T 12-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 ALFP_2205 74c242a6aeba81a23456330835ea2ab9 497 SUPERFAMILY SSF54292 5 90 1.01E-16 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_2205 74c242a6aeba81a23456330835ea2ab9 497 Gene3D G3DSA:1.10.150.120 90 201 3.1E-31 T 12-10-2018 ALFP_2205 74c242a6aeba81a23456330835ea2ab9 497 Gene3D G3DSA:3.30.390.50 372 474 5.8E-34 T 12-10-2018 ALFP_2205 74c242a6aeba81a23456330835ea2ab9 497 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 43 51 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ALFP_2205 74c242a6aeba81a23456330835ea2ab9 497 Gene3D G3DSA:3.10.20.30 1 89 2.6E-26 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_2205 74c242a6aeba81a23456330835ea2ab9 497 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 372 472 4.6E-35 T 12-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal ALFP_2205 74c242a6aeba81a23456330835ea2ab9 497 SUPERFAMILY SSF47741 98 211 6.67E-33 T 12-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily ALFP_2205 74c242a6aeba81a23456330835ea2ab9 497 SMART SM01092 372 473 2.1E-36 T 12-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal ALFP_2205 74c242a6aeba81a23456330835ea2ab9 497 Gene3D G3DSA:3.30.43.10 202 251 9.6E-22 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 ALFP_2205 74c242a6aeba81a23456330835ea2ab9 497 SUPERFAMILY SSF56176 185 364 1.53E-51 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 ALFP_2205 74c242a6aeba81a23456330835ea2ab9 497 SUPERFAMILY SSF55447 370 476 3.79E-37 T 12-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily ALFP_2205 74c242a6aeba81a23456330835ea2ab9 497 PIRSF PIRSF036557 3 486 1.1E-212 T 12-10-2018 IPR012175 Xanthine dehydrogenase, small subunit, bacteria ALFP_2205 74c242a6aeba81a23456330835ea2ab9 497 Gene3D G3DSA:3.30.465.10 252 365 3.2E-29 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 ALFP_2205 74c242a6aeba81a23456330835ea2ab9 497 TIGRFAM TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit 6 473 4.0E-210 T 12-10-2018 IPR014307 Xanthine dehydrogenase, small subunit GO:0004854|GO:0004855|GO:0050660|GO:0055114 KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999|Reactome: R-HSA-74259|Reactome: R-HSA-8851680 ALFP_2205 74c242a6aeba81a23456330835ea2ab9 497 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 201 364 2.7E-46 T 12-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 ALFP_0342 6a05e23ccc962cae2307d3814d258654 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 17 114 1.2E-26 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 ALFP_0342 6a05e23ccc962cae2307d3814d258654 222 Gene3D G3DSA:1.10.3720.10 8 218 1.0E-49 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0342 6a05e23ccc962cae2307d3814d258654 222 SUPERFAMILY SSF161098 17 205 2.49E-41 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0342 6a05e23ccc962cae2307d3814d258654 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 214 7.1E-23 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0948 c545525655cd36d6fc17823560962905 652 Pfam PF12704 MacB-like periplasmic core domain 278 496 6.8E-33 T 12-10-2018 IPR025857 MacB-like periplasmic core domain ALFP_0948 c545525655cd36d6fc17823560962905 652 Gene3D G3DSA:3.40.50.300 7 282 1.9E-69 T 12-10-2018 ALFP_0948 c545525655cd36d6fc17823560962905 652 Pfam PF02687 FtsX-like permease family 559 641 1.7E-8 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 ALFP_0948 c545525655cd36d6fc17823560962905 652 SMART SM00382 40 227 1.6E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0948 c545525655cd36d6fc17823560962905 652 Pfam PF00005 ABC transporter 33 179 2.2E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0948 c545525655cd36d6fc17823560962905 652 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0948 c545525655cd36d6fc17823560962905 652 SUPERFAMILY SSF52540 8 236 5.2E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3151 e90e671cab7821a3d7a71e2411f935d0 619 SUPERFAMILY SSF56519 54 252 5.49E-47 T 12-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 ALFP_3151 e90e671cab7821a3d7a71e2411f935d0 619 Gene3D G3DSA:3.40.710.10 252 619 8.1E-97 T 12-10-2018 ALFP_3151 e90e671cab7821a3d7a71e2411f935d0 619 Pfam PF03717 Penicillin-binding Protein dimerisation domain 62 238 9.9E-42 T 12-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 ALFP_3151 e90e671cab7821a3d7a71e2411f935d0 619 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 5 616 48.37 T 12-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ALFP_3151 e90e671cab7821a3d7a71e2411f935d0 619 Gene3D G3DSA:3.90.1310.10 62 247 2.6E-43 T 12-10-2018 ALFP_3151 e90e671cab7821a3d7a71e2411f935d0 619 Pfam PF00905 Penicillin binding protein transpeptidase domain 270 608 1.9E-68 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 ALFP_3151 e90e671cab7821a3d7a71e2411f935d0 619 Gene3D G3DSA:3.30.1390.30 83 159 2.6E-43 T 12-10-2018 ALFP_3151 e90e671cab7821a3d7a71e2411f935d0 619 SUPERFAMILY SSF56601 253 612 3.82E-97 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like ALFP_3151 e90e671cab7821a3d7a71e2411f935d0 619 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 18 612 1.7E-222 T 12-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ALFP_1035 f73f4eb5bd127f86e20b9f8b050a9f3a 259 SUPERFAMILY SSF64288 80 258 2.04E-40 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily ALFP_1035 f73f4eb5bd127f86e20b9f8b050a9f3a 259 SUPERFAMILY SSF46785 26 103 6.03E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1035 f73f4eb5bd127f86e20b9f8b050a9f3a 259 Gene3D G3DSA:3.40.1410.10 99 258 2.9E-53 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily ALFP_1035 f73f4eb5bd127f86e20b9f8b050a9f3a 259 Pfam PF07702 UTRA domain 116 253 1.4E-35 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ALFP_1035 f73f4eb5bd127f86e20b9f8b050a9f3a 259 SMART SM00866 111 253 1.7E-34 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ALFP_1035 f73f4eb5bd127f86e20b9f8b050a9f3a 259 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 65 81 2.2E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1035 f73f4eb5bd127f86e20b9f8b050a9f3a 259 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 65 2.2E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1035 f73f4eb5bd127f86e20b9f8b050a9f3a 259 Gene3D G3DSA:1.10.10.10 24 92 7.5E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1035 f73f4eb5bd127f86e20b9f8b050a9f3a 259 Pfam PF00392 Bacterial regulatory proteins, gntR family 28 91 5.9E-21 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1035 f73f4eb5bd127f86e20b9f8b050a9f3a 259 SMART SM00345 32 91 3.5E-21 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1989 bec827944f28e79ff063dfeffac6c125 690 Pfam PF01432 Peptidase family M3 224 684 3.4E-131 T 12-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 ALFP_1989 bec827944f28e79ff063dfeffac6c125 690 SUPERFAMILY SSF55486 3 684 1.47E-183 T 12-10-2018 ALFP_1989 bec827944f28e79ff063dfeffac6c125 690 Gene3D G3DSA:1.10.1370.10 142 608 1.0E-243 T 12-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 ALFP_1989 bec827944f28e79ff063dfeffac6c125 690 Gene3D G3DSA:1.10.1370.40 16 682 1.0E-243 T 12-10-2018 ALFP_0024 ecd37aac92eb458a60486bcab162443e 403 Gene3D G3DSA:3.40.50.10540 11 397 3.2E-109 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_0024 ecd37aac92eb458a60486bcab162443e 403 Pfam PF02515 CoA-transferase family III 11 380 1.3E-103 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 ALFP_0024 ecd37aac92eb458a60486bcab162443e 403 SUPERFAMILY SSF89796 9 403 1.57E-111 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_0024 ecd37aac92eb458a60486bcab162443e 403 Gene3D G3DSA:3.30.1540.10 239 331 3.2E-109 T 12-10-2018 ALFP_2931 6965606cc06e98455c87d13ef3e5a4a5 310 Hamap MF_01818 Ribonuclease BN [rbn]. 14 310 23.886 T 12-10-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 ALFP_2931 6965606cc06e98455c87d13ef3e5a4a5 310 SUPERFAMILY SSF56281 15 309 1.06E-59 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_2931 6965606cc06e98455c87d13ef3e5a4a5 310 Pfam PF12706 Beta-lactamase superfamily domain 44 256 7.7E-20 T 12-10-2018 IPR001279 Metallo-beta-lactamase ALFP_2931 6965606cc06e98455c87d13ef3e5a4a5 310 Gene3D G3DSA:3.60.15.10 14 310 2.9E-69 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_2931 6965606cc06e98455c87d13ef3e5a4a5 310 SMART SM00849 31 255 7.3E-6 T 12-10-2018 IPR001279 Metallo-beta-lactamase ALFP_0677 053065696037deed609945cf11f76c17 159 SUPERFAMILY SSF54690 2 149 1.02E-49 T 12-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 ALFP_0677 053065696037deed609945cf11f76c17 159 Gene3D G3DSA:3.90.1170.40 1 149 4.1E-48 T 12-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 ALFP_0677 053065696037deed609945cf11f76c17 159 Pfam PF02391 MoaE protein 4 119 4.3E-36 T 12-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 ALFP_0581 96c2dc7a0c8392257764deade055ffda 539 SUPERFAMILY SSF81442 80 518 1.96E-86 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_0581 96c2dc7a0c8392257764deade055ffda 539 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 84 496 2.3E-74 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_0581 96c2dc7a0c8392257764deade055ffda 539 Gene3D G3DSA:1.20.210.10 74 521 1.5E-151 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3016 221630fca664f0e2a265e041fe2793b3 273 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3016 221630fca664f0e2a265e041fe2793b3 273 Pfam PF00005 ABC transporter 19 171 4.3E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3016 221630fca664f0e2a265e041fe2793b3 273 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 1 239 6.1E-93 T 12-10-2018 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 ALFP_3016 221630fca664f0e2a265e041fe2793b3 273 SUPERFAMILY SSF52540 2 230 1.59E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3016 221630fca664f0e2a265e041fe2793b3 273 Gene3D G3DSA:3.40.50.300 1 240 3.1E-65 T 12-10-2018 ALFP_3016 221630fca664f0e2a265e041fe2793b3 273 SMART SM00382 26 228 6.2E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1568 be71c154160efea8aa7ed8a44f5b676b 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 1.3E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1568 be71c154160efea8aa7ed8a44f5b676b 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 1.3E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1568 be71c154160efea8aa7ed8a44f5b676b 204 SUPERFAMILY SSF48498 99 197 1.25E-9 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily ALFP_1568 be71c154160efea8aa7ed8a44f5b676b 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 67 6.7E-17 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1568 be71c154160efea8aa7ed8a44f5b676b 204 SUPERFAMILY SSF46689 14 84 2.44E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1568 be71c154160efea8aa7ed8a44f5b676b 204 Gene3D G3DSA:1.10.357.10 12 204 3.5E-40 T 12-10-2018 ALFP_1568 be71c154160efea8aa7ed8a44f5b676b 204 ProSitePatterns PS01081 TetR-type HTH domain signature. 36 67 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site ALFP_2529 3a511b93b747197842b2e22c077e3a36 312 Gene3D G3DSA:3.30.70.250 123 196 3.2E-94 T 12-10-2018 ALFP_2529 3a511b93b747197842b2e22c077e3a36 312 PIRSF PIRSF000446 1 310 4.6E-107 T 12-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 ALFP_2529 3a511b93b747197842b2e22c077e3a36 312 SUPERFAMILY SSF55048 128 192 1.44E-16 T 12-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding ALFP_2529 3a511b93b747197842b2e22c077e3a36 312 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 299 6.8E-32 T 12-10-2018 IPR020801 Polyketide synthase, acyl transferase domain ALFP_2529 3a511b93b747197842b2e22c077e3a36 312 Gene3D G3DSA:3.40.366.10 4 283 3.2E-94 T 12-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 ALFP_2529 3a511b93b747197842b2e22c077e3a36 312 SUPERFAMILY SSF52151 3 309 1.05E-73 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase ALFP_2529 3a511b93b747197842b2e22c077e3a36 312 Pfam PF00698 Acyl transferase domain 5 281 1.4E-33 T 12-10-2018 IPR014043 Acyl transferase ALFP_2529 3a511b93b747197842b2e22c077e3a36 312 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 1 290 7.6E-104 T 12-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 ALFP_3003 02a9013478b14ea11d586aad6e6c4c8d 700 Pfam PF13380 CoA binding domain 18 142 1.6E-18 T 12-10-2018 IPR003781 CoA-binding GO:0048037 ALFP_3003 02a9013478b14ea11d586aad6e6c4c8d 700 SUPERFAMILY SSF52210 311 463 3.92E-21 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 ALFP_3003 02a9013478b14ea11d586aad6e6c4c8d 700 SUPERFAMILY SSF51735 8 146 3.39E-30 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3003 02a9013478b14ea11d586aad6e6c4c8d 700 SMART SM00881 13 108 1.5E-23 T 12-10-2018 IPR003781 CoA-binding GO:0048037 ALFP_3003 02a9013478b14ea11d586aad6e6c4c8d 700 Gene3D G3DSA:3.30.470.20 485 695 7.2E-72 T 12-10-2018 ALFP_3003 02a9013478b14ea11d586aad6e6c4c8d 700 SUPERFAMILY SSF52210 140 297 2.35E-33 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 ALFP_3003 02a9013478b14ea11d586aad6e6c4c8d 700 SUPERFAMILY SSF56059 487 697 2.3E-36 T 12-10-2018 ALFP_3003 02a9013478b14ea11d586aad6e6c4c8d 700 Gene3D G3DSA:3.30.1490.20 505 582 7.2E-72 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 ALFP_3003 02a9013478b14ea11d586aad6e6c4c8d 700 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 165 298 7.5E-43 T 12-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain ALFP_3003 02a9013478b14ea11d586aad6e6c4c8d 700 Pfam PF13549 ATP-grasp domain 483 698 1.3E-67 T 12-10-2018 ALFP_3003 02a9013478b14ea11d586aad6e6c4c8d 700 Gene3D G3DSA:3.40.50.261 138 301 3.1E-42 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 ALFP_3003 02a9013478b14ea11d586aad6e6c4c8d 700 Gene3D G3DSA:3.40.50.720 8 137 1.2E-33 T 12-10-2018 ALFP_3003 02a9013478b14ea11d586aad6e6c4c8d 700 Gene3D G3DSA:3.40.50.261 307 465 2.7E-27 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 ALFP_0673 7445610d1712b2e5ec4a194595fdf3be 346 Pfam PF06463 Molybdenum Cofactor Synthesis C 201 326 8.4E-36 T 12-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 ALFP_0673 7445610d1712b2e5ec4a194595fdf3be 346 SUPERFAMILY SSF102114 12 292 3.79E-75 T 12-10-2018 ALFP_0673 7445610d1712b2e5ec4a194595fdf3be 346 Pfam PF04055 Radical SAM superfamily 24 191 1.3E-30 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 ALFP_0673 7445610d1712b2e5ec4a194595fdf3be 346 Pfam PF13353 4Fe-4S single cluster domain 26 119 1.1E-8 T 12-10-2018 ALFP_0673 7445610d1712b2e5ec4a194595fdf3be 346 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 10 346 40.701 T 12-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 ALFP_0673 7445610d1712b2e5ec4a194595fdf3be 346 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 25 36 - T 12-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 ALFP_0673 7445610d1712b2e5ec4a194595fdf3be 346 Gene3D G3DSA:3.20.20.70 9 346 8.2E-96 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0673 7445610d1712b2e5ec4a194595fdf3be 346 SMART SM00729 19 232 2.7E-8 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 ALFP_0673 7445610d1712b2e5ec4a194595fdf3be 346 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 12 346 1.1E-114 T 12-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 515 3.7E-241 T 12-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 SUPERFAMILY SSF51905 206 513 6.82E-50 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 266 276 2.0E-61 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 350 374 2.0E-61 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 313 321 2.0E-61 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 335 347 2.0E-61 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 402 418 2.0E-61 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 214 236 2.0E-61 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 476 494 2.0E-61 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 441 462 2.0E-61 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 246 261 2.0E-61 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 Gene3D G3DSA:3.50.50.60 213 506 6.4E-107 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 PIRSF PIRSF000238 1 519 2.2E-256 T 12-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 342 362 - T 12-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 Pfam PF13192 Thioredoxin domain 125 195 6.5E-10 T 12-10-2018 IPR012336 Thioredoxin-like fold ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 215 234 1.1E-40 T 12-10-2018 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 439 455 1.1E-40 T 12-10-2018 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 354 372 1.1E-40 T 12-10-2018 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 312 330 1.1E-40 T 12-10-2018 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 466 488 1.1E-40 T 12-10-2018 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 Gene3D G3DSA:3.50.50.60 324 447 6.4E-107 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 SUPERFAMILY SSF52833 104 197 1.4E-23 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 213 502 2.3E-47 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 SUPERFAMILY SSF52833 1 101 5.03E-30 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_2861 bdad1b26ab720d74543e55443b0e1616 530 Gene3D G3DSA:3.40.30.80 1 200 1.5E-63 T 12-10-2018 ALFP_0865 8c23664229e154dbe30db84d2790ea8c 203 Pfam PF13460 NAD(P)H-binding 8 192 1.9E-30 T 12-10-2018 IPR016040 NAD(P)-binding domain ALFP_0865 8c23664229e154dbe30db84d2790ea8c 203 SUPERFAMILY SSF51735 1 202 2.73E-36 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0865 8c23664229e154dbe30db84d2790ea8c 203 Gene3D G3DSA:3.40.50.720 3 202 1.2E-51 T 12-10-2018 ALFP_2458 3218d770e216714fa003f317b93b185b 323 Pfam PF02401 LytB protein 12 288 2.7E-93 T 12-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 ALFP_2458 3218d770e216714fa003f317b93b185b 323 Gene3D G3DSA:3.40.1010.20 106 202 1.3E-113 T 12-10-2018 ALFP_2458 3218d770e216714fa003f317b93b185b 323 Gene3D G3DSA:3.40.50.11270 21 105 1.3E-113 T 12-10-2018 ALFP_2458 3218d770e216714fa003f317b93b185b 323 Gene3D G3DSA:3.40.1010.20 15 288 1.3E-113 T 12-10-2018 ALFP_2458 3218d770e216714fa003f317b93b185b 323 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 12 290 8.1E-102 T 12-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 ALFP_2458 3218d770e216714fa003f317b93b185b 323 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 10 292 38.385 T 12-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 ALFP_0017 57ad90ca8eeaae898aca0210ab46e2c3 96 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 19 91 9.4E-23 T 12-10-2018 ALFP_0017 57ad90ca8eeaae898aca0210ab46e2c3 96 SUPERFAMILY SSF54292 19 94 1.57E-18 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_0017 57ad90ca8eeaae898aca0210ab46e2c3 96 Gene3D G3DSA:3.10.20.440 5 95 1.4E-16 T 12-10-2018 ALFP_3719 d3e3a9dbba218451fd35d97fcc55cf9a 252 SMART SM00382 26 227 1.9E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3719 d3e3a9dbba218451fd35d97fcc55cf9a 252 Gene3D G3DSA:3.40.50.300 1 250 5.1E-57 T 12-10-2018 ALFP_3719 d3e3a9dbba218451fd35d97fcc55cf9a 252 SUPERFAMILY SSF52540 2 249 1.95E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3719 d3e3a9dbba218451fd35d97fcc55cf9a 252 Pfam PF00005 ABC transporter 18 177 1.2E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3719 d3e3a9dbba218451fd35d97fcc55cf9a 252 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 227 249 4.6E-10 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal ALFP_1406 4dfe4136c84f9f95802a3ac09251c221 61 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 26.597 T 12-10-2018 IPR038053 Uncharacterised protein family UPF0434 ALFP_1406 4dfe4136c84f9f95802a3ac09251c221 61 SUPERFAMILY SSF158997 1 55 1.83E-20 T 12-10-2018 ALFP_1406 4dfe4136c84f9f95802a3ac09251c221 61 Pfam PF03966 Trm112p-like protein 4 41 2.4E-11 T 12-10-2018 IPR005651 Trm112-like ALFP_1406 4dfe4136c84f9f95802a3ac09251c221 61 Gene3D G3DSA:2.20.25.10 8 60 2.1E-24 T 12-10-2018 ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 Gene3D G3DSA:3.40.50.300 14 375 2.4E-103 T 12-10-2018 ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 Pfam PF03144 Elongation factor Tu domain 2 312 378 1.8E-7 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 15 148 1.3E-22 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 4 526 50.71 T 12-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 8 528 5.9E-209 T 12-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 Pfam PF16658 Class II release factor RF3, C-terminal domain 385 513 9.5E-44 T 12-10-2018 IPR032090 Peptide chain release factor 3, C-terminal ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 SUPERFAMILY SSF50447 259 389 2.05E-27 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 SUPERFAMILY SSF52540 10 275 9.38E-87 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 Gene3D G3DSA:3.30.70.3280 388 528 7.6E-47 T 12-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 PRINTS PR00315 GTP-binding elongation factor signature 101 112 2.7E-11 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 PRINTS PR00315 GTP-binding elongation factor signature 65 73 2.7E-11 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 PRINTS PR00315 GTP-binding elongation factor signature 15 28 2.7E-11 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 PRINTS PR00315 GTP-binding elongation factor signature 137 146 2.7E-11 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 PRINTS PR00315 GTP-binding elongation factor signature 85 95 2.7E-11 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 SUPERFAMILY SSF54980 390 463 2.41E-16 T 12-10-2018 IPR035647 EF-G domain III/V-like ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 Pfam PF00009 Elongation factor Tu GTP binding domain 12 275 2.8E-52 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_0167 12feb2ca032d1241ab96279c356de4e2 537 Gene3D G3DSA:3.40.50.300 21 273 2.4E-103 T 12-10-2018 ALFP_1471 9e09f284993542e2bf5bbbbc78ecde0b 436 SUPERFAMILY SSF54534 133 249 5.99E-28 T 12-10-2018 ALFP_1471 9e09f284993542e2bf5bbbbc78ecde0b 436 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 158 239 1.1E-11 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain ALFP_1471 9e09f284993542e2bf5bbbbc78ecde0b 436 Gene3D G3DSA:3.30.70.1050 1 116 7.2E-31 T 12-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 ALFP_1471 9e09f284993542e2bf5bbbbc78ecde0b 436 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 265 417 1.3E-30 T 12-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 ALFP_1471 9e09f284993542e2bf5bbbbc78ecde0b 436 Hamap MF_00303 Trigger factor [tig]. 1 423 19.655 T 12-10-2018 IPR005215 Trigger factor GO:0015031 ALFP_1471 9e09f284993542e2bf5bbbbc78ecde0b 436 Pfam PF05697 Bacterial trigger factor protein (TF) 1 143 8.6E-36 T 12-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 ALFP_1471 9e09f284993542e2bf5bbbbc78ecde0b 436 SUPERFAMILY SSF109998 250 434 9.68E-43 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily ALFP_1471 9e09f284993542e2bf5bbbbc78ecde0b 436 Gene3D G3DSA:1.10.3120.10 117 422 8.4E-92 T 12-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 ALFP_1471 9e09f284993542e2bf5bbbbc78ecde0b 436 SUPERFAMILY SSF102735 1 129 1.22E-31 T 12-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 ALFP_1471 9e09f284993542e2bf5bbbbc78ecde0b 436 PIRSF PIRSF003095 1 436 2.0E-118 T 12-10-2018 IPR005215 Trigger factor GO:0015031 ALFP_1471 9e09f284993542e2bf5bbbbc78ecde0b 436 Gene3D G3DSA:3.10.50.40 151 248 8.4E-92 T 12-10-2018 ALFP_1471 9e09f284993542e2bf5bbbbc78ecde0b 436 TIGRFAM TIGR00115 tig: trigger factor 11 417 5.7E-127 T 12-10-2018 IPR005215 Trigger factor GO:0015031 ALFP_1894 24076f736f0da0117fb6333a855651ad 243 SUPERFAMILY SSF52540 2 241 6.52E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1894 24076f736f0da0117fb6333a855651ad 243 SMART SM00382 18 219 1.4E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1894 24076f736f0da0117fb6333a855651ad 243 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 220 241 1.9E-11 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal ALFP_1894 24076f736f0da0117fb6333a855651ad 243 Gene3D G3DSA:3.40.50.300 1 242 2.9E-61 T 12-10-2018 ALFP_1894 24076f736f0da0117fb6333a855651ad 243 Pfam PF00005 ABC transporter 10 169 4.2E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3228 df6158aad03459e2f7e924a72664d7c0 383 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 12 367 2.9E-92 T 12-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 ALFP_3228 df6158aad03459e2f7e924a72664d7c0 383 PIRSF PIRSF000267 7 383 2.4E-108 T 12-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 ALFP_3228 df6158aad03459e2f7e924a72664d7c0 383 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 7 381 1.3E-114 T 12-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 Gene3D G3DSA:2.60.40.420 100 242 2.7E-52 T 12-10-2018 IPR008972 Cupredoxin ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 Gene3D G3DSA:1.10.760.10 243 361 3.4E-27 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 SUPERFAMILY SSF49503 95 292 1.98E-52 T 12-10-2018 IPR008972 Cupredoxin ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 262 336 4.7E-11 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 8 88 2.8E-16 T 12-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 17 238 1.5E-57 T 12-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 PRINTS PR01166 Cytochrome c oxidase subunit II signature 99 118 7.8E-37 T 12-10-2018 ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 PRINTS PR01166 Cytochrome c oxidase subunit II signature 149 170 7.8E-37 T 12-10-2018 ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 PRINTS PR01166 Cytochrome c oxidase subunit II signature 77 97 7.8E-37 T 12-10-2018 ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 PRINTS PR01166 Cytochrome c oxidase subunit II signature 173 193 7.8E-37 T 12-10-2018 ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 PRINTS PR01166 Cytochrome c oxidase subunit II signature 211 228 7.8E-37 T 12-10-2018 ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 PRINTS PR01166 Cytochrome c oxidase subunit II signature 65 77 7.8E-37 T 12-10-2018 ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 PRINTS PR01166 Cytochrome c oxidase subunit II signature 193 210 7.8E-37 T 12-10-2018 ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 SUPERFAMILY SSF81464 5 97 5.23E-27 T 12-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 SUPERFAMILY SSF46626 248 348 4.8E-23 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 174 222 - T 12-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 Gene3D G3DSA:1.10.287.90 4 99 5.7E-25 T 12-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3517 79ab3eb77526d803e992e168405db6e3 361 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 103 228 2.0E-36 T 12-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_0473 045a0459d9aeab4d162ad8c3a28aa3d6 401 Pfam PF07690 Major Facilitator Superfamily 9 318 2.8E-40 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_0473 045a0459d9aeab4d162ad8c3a28aa3d6 401 SUPERFAMILY SSF103473 3 385 6.41E-64 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_0473 045a0459d9aeab4d162ad8c3a28aa3d6 401 Gene3D G3DSA:1.20.1250.20 3 194 5.5E-29 T 12-10-2018 ALFP_0473 045a0459d9aeab4d162ad8c3a28aa3d6 401 PRINTS PR01035 Tetracycline resistance protein signature 10 26 1.3E-6 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 ALFP_0473 045a0459d9aeab4d162ad8c3a28aa3d6 401 PRINTS PR01035 Tetracycline resistance protein signature 98 119 1.3E-6 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 ALFP_0473 045a0459d9aeab4d162ad8c3a28aa3d6 401 PRINTS PR01035 Tetracycline resistance protein signature 40 59 1.3E-6 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 ALFP_0473 045a0459d9aeab4d162ad8c3a28aa3d6 401 PRINTS PR01035 Tetracycline resistance protein signature 158 178 1.3E-6 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 ALFP_0473 045a0459d9aeab4d162ad8c3a28aa3d6 401 Gene3D G3DSA:1.20.1250.20 195 388 1.0E-19 T 12-10-2018 ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 24 233 4.4E-90 T 12-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 SUPERFAMILY SSF55874 714 880 3.41E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 771 875 7.1E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 Gene3D G3DSA:3.40.50.300 23 232 9.7E-94 T 12-10-2018 ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 SMART SM00387 768 878 4.2E-27 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 Gene3D G3DSA:3.40.50.620 243 368 3.1E-7 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 Gene3D G3DSA:1.10.287.130 651 728 5.6E-16 T 12-10-2018 ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 Gene3D G3DSA:3.30.450.40 508 650 1.4E-31 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 SUPERFAMILY SSF52402 257 366 4.6E-7 T 12-10-2018 ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 Pfam PF00512 His Kinase A (phospho-acceptor) domain 658 723 5.2E-14 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 Gene3D G3DSA:1.20.120.620 394 499 1.0E-32 T 12-10-2018 IPR038318 KdpD, transmembrane domain superfamily ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 Gene3D G3DSA:3.30.565.10 729 883 3.1E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 Pfam PF13493 Domain of unknown function (DUF4118) 401 503 4.1E-29 T 12-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 SMART SM00388 657 724 4.5E-17 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 SUPERFAMILY SSF47384 652 724 1.57E-14 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 PRINTS PR00344 Bacterial sensor protein C-terminal signature 805 819 7.1E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 PRINTS PR00344 Bacterial sensor protein C-terminal signature 862 875 7.1E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 PRINTS PR00344 Bacterial sensor protein C-terminal signature 838 856 7.1E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1396 9f7c9c0825851a16f8239f2ea305fd4e 889 PRINTS PR00344 Bacterial sensor protein C-terminal signature 823 833 7.1E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2497 ca5ca8b5b6e85b77ada76d639c15af99 255 SMART SM00882 28 240 5.6E-96 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 ALFP_2497 ca5ca8b5b6e85b77ada76d639c15af99 255 Gene3D G3DSA:3.40.1080.10 22 250 8.0E-100 T 12-10-2018 ALFP_2497 ca5ca8b5b6e85b77ada76d639c15af99 255 SUPERFAMILY SSF100950 23 250 4.01E-90 T 12-10-2018 IPR037171 NagB/RpiA transferase-like ALFP_2497 ca5ca8b5b6e85b77ada76d639c15af99 255 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 24 240 5.7E-81 T 12-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 ALFP_2497 ca5ca8b5b6e85b77ada76d639c15af99 255 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 41 56 - T 12-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 ALFP_2497 ca5ca8b5b6e85b77ada76d639c15af99 255 Pfam PF01144 Coenzyme A transferase 30 240 4.3E-81 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 ALFP_0801 b2070bc4ba6caa70ad958ea7bf80f004 310 SUPERFAMILY SSF51261 161 293 1.1E-54 T 12-10-2018 IPR011055 Duplicated hybrid motif ALFP_0801 b2070bc4ba6caa70ad958ea7bf80f004 310 Gene3D G3DSA:2.70.70.10 134 297 2.7E-49 T 12-10-2018 IPR011055 Duplicated hybrid motif ALFP_0801 b2070bc4ba6caa70ad958ea7bf80f004 310 Pfam PF01551 Peptidase family M23 196 289 1.5E-33 T 12-10-2018 IPR016047 Peptidase M23 ALFP_1177 cad52c3c247468b08873a146dfd6471c 150 Pfam PF05154 TM2 domain 87 134 1.3E-13 T 12-10-2018 IPR007829 TM2 domain ALFP_2110 b12ec489cbc67c1ff19aea6fba497cf7 557 Gene3D G3DSA:1.20.1250.20 22 393 3.3E-57 T 12-10-2018 ALFP_2110 b12ec489cbc67c1ff19aea6fba497cf7 557 SUPERFAMILY SSF103473 20 553 3.05E-57 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2110 b12ec489cbc67c1ff19aea6fba497cf7 557 Pfam PF00083 Sugar (and other) transporter 26 231 3.5E-28 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ALFP_2110 b12ec489cbc67c1ff19aea6fba497cf7 557 Gene3D G3DSA:1.20.1250.20 422 556 4.9E-8 T 12-10-2018 ALFP_2110 b12ec489cbc67c1ff19aea6fba497cf7 557 ProSitePatterns PS00217 Sugar transport proteins signature 2. 134 159 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ALFP_1237 a30c9269a3370174e379579c2d914089 253 Pfam PF04545 Sigma-70, region 4 184 233 1.8E-13 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 ALFP_1237 a30c9269a3370174e379579c2d914089 253 Gene3D G3DSA:1.20.140.160 79 238 4.1E-37 T 12-10-2018 ALFP_1237 a30c9269a3370174e379579c2d914089 253 PIRSF PIRSF000770 2 248 6.8E-38 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_1237 a30c9269a3370174e379579c2d914089 253 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 8 235 4.3E-76 T 12-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 ALFP_1237 a30c9269a3370174e379579c2d914089 253 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 35 48 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_1237 a30c9269a3370174e379579c2d914089 253 SUPERFAMILY SSF88659 81 157 6.54E-14 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like ALFP_1237 a30c9269a3370174e379579c2d914089 253 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 233 1.3E-31 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 ALFP_1237 a30c9269a3370174e379579c2d914089 253 SUPERFAMILY SSF88659 163 240 1.87E-17 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like ALFP_1237 a30c9269a3370174e379579c2d914089 253 Pfam PF04539 Sigma-70 region 3 88 142 7.7E-9 T 12-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 ALFP_1237 a30c9269a3370174e379579c2d914089 253 Pfam PF04542 Sigma-70 region 2 8 80 5.7E-16 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_1237 a30c9269a3370174e379579c2d914089 253 Gene3D G3DSA:1.10.1740.10 2 77 2.6E-28 T 12-10-2018 ALFP_1237 a30c9269a3370174e379579c2d914089 253 SUPERFAMILY SSF88946 6 80 1.44E-22 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_1237 a30c9269a3370174e379579c2d914089 253 PRINTS PR00046 Major sigma-70 factor signature 188 200 9.3E-10 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_1237 a30c9269a3370174e379579c2d914089 253 PRINTS PR00046 Major sigma-70 factor signature 220 231 9.3E-10 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_1237 a30c9269a3370174e379579c2d914089 253 PRINTS PR00046 Major sigma-70 factor signature 59 67 9.3E-10 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_1237 a30c9269a3370174e379579c2d914089 253 PRINTS PR00046 Major sigma-70 factor signature 35 48 9.3E-10 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_1237 a30c9269a3370174e379579c2d914089 253 PRINTS PR00046 Major sigma-70 factor signature 205 220 9.3E-10 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_3618 b1dca13ee173db95628d355f040b55d2 72 SUPERFAMILY SSF50249 1 70 7.43E-27 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_3618 b1dca13ee173db95628d355f040b55d2 72 Gene3D G3DSA:2.40.50.140 1 72 6.9E-36 T 12-10-2018 ALFP_3618 b1dca13ee173db95628d355f040b55d2 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 2.2E-36 T 12-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 ALFP_3618 b1dca13ee173db95628d355f040b55d2 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 2.8E-26 T 12-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 ALFP_3618 b1dca13ee173db95628d355f040b55d2 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 26.742 T 12-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 ALFP_3651 3d78908495ef1a822529f5cc5beaad95 398 SUPERFAMILY SSF53850 42 275 6.75E-37 T 12-10-2018 ALFP_3651 3d78908495ef1a822529f5cc5beaad95 398 Pfam PF13379 NMT1-like family 40 278 1.4E-46 T 12-10-2018 ALFP_3651 3d78908495ef1a822529f5cc5beaad95 398 Gene3D G3DSA:3.40.190.10 40 132 1.4E-14 T 12-10-2018 ALFP_3651 3d78908495ef1a822529f5cc5beaad95 398 Gene3D G3DSA:3.40.190.10 165 389 5.9E-37 T 12-10-2018 ALFP_0854 ee6effede0a5883dc7d0cc1e4392aed8 494 Gene3D G3DSA:3.40.309.10 267 457 6.6E-165 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_0854 ee6effede0a5883dc7d0cc1e4392aed8 494 Pfam PF00171 Aldehyde dehydrogenase family 32 489 3.3E-160 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_0854 ee6effede0a5883dc7d0cc1e4392aed8 494 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 263 270 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 ALFP_0854 ee6effede0a5883dc7d0cc1e4392aed8 494 Gene3D G3DSA:3.40.605.10 34 487 6.6E-165 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_0854 ee6effede0a5883dc7d0cc1e4392aed8 494 SUPERFAMILY SSF53720 17 491 2.75E-149 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_1889 c9b4d797986071d78ec387c20a84ce1b 435 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 139 156 - T 12-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 ALFP_1889 c9b4d797986071d78ec387c20a84ce1b 435 Gene3D G3DSA:3.40.190.10 28 381 7.8E-142 T 12-10-2018 ALFP_1889 c9b4d797986071d78ec387c20a84ce1b 435 Pfam PF13416 Bacterial extracellular solute-binding protein 42 354 9.6E-47 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein ALFP_1889 c9b4d797986071d78ec387c20a84ce1b 435 SUPERFAMILY SSF53850 24 423 3.62E-79 T 12-10-2018 ALFP_1889 c9b4d797986071d78ec387c20a84ce1b 435 Gene3D G3DSA:3.40.190.10 144 421 7.8E-142 T 12-10-2018 ALFP_0914 8e43cd7feb6031f19fd6409b30b29a6d 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.5E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0914 8e43cd7feb6031f19fd6409b30b29a6d 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.5E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0914 8e43cd7feb6031f19fd6409b30b29a6d 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.5E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0914 8e43cd7feb6031f19fd6409b30b29a6d 301 Gene3D G3DSA:3.40.190.290 102 300 1.1E-26 T 12-10-2018 ALFP_0914 8e43cd7feb6031f19fd6409b30b29a6d 301 SUPERFAMILY SSF53850 89 294 4.56E-32 T 12-10-2018 ALFP_0914 8e43cd7feb6031f19fd6409b30b29a6d 301 Gene3D G3DSA:1.10.10.10 1 89 1.1E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0914 8e43cd7feb6031f19fd6409b30b29a6d 301 SUPERFAMILY SSF46785 4 88 3.59E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0914 8e43cd7feb6031f19fd6409b30b29a6d 301 Pfam PF03466 LysR substrate binding domain 88 291 3.2E-31 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0914 8e43cd7feb6031f19fd6409b30b29a6d 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 2.0E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1941 7b52ffb865c1cd6ade7a8e520b53eb43 284 Gene3D G3DSA:1.25.40.20 6 213 1.9E-44 T 12-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily ALFP_1941 7b52ffb865c1cd6ade7a8e520b53eb43 284 SMART SM00248 53 83 5.6 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 ALFP_1941 7b52ffb865c1cd6ade7a8e520b53eb43 284 SMART SM00248 87 116 2900.0 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 ALFP_1941 7b52ffb865c1cd6ade7a8e520b53eb43 284 SMART SM00248 150 179 0.013 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 ALFP_1941 7b52ffb865c1cd6ade7a8e520b53eb43 284 SMART SM00248 117 146 4.1E-6 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 ALFP_1941 7b52ffb865c1cd6ade7a8e520b53eb43 284 SMART SM00248 183 212 1900.0 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 ALFP_1941 7b52ffb865c1cd6ade7a8e520b53eb43 284 PRINTS PR01415 Ankyrin repeat signature 166 180 3.5E-7 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 ALFP_1941 7b52ffb865c1cd6ade7a8e520b53eb43 284 PRINTS PR01415 Ankyrin repeat signature 118 133 3.5E-7 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 ALFP_1941 7b52ffb865c1cd6ade7a8e520b53eb43 284 Pfam PF12796 Ankyrin repeats (3 copies) 117 181 2.7E-14 T 12-10-2018 IPR020683 Ankyrin repeat-containing domain ALFP_1941 7b52ffb865c1cd6ade7a8e520b53eb43 284 SUPERFAMILY SSF48403 26 204 2.18E-39 T 12-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily ALFP_0615 3ec2ab9cf79fc8a963f2acf5da63873b 318 Pfam PF00753 Metallo-beta-lactamase superfamily 33 195 4.6E-7 T 12-10-2018 IPR001279 Metallo-beta-lactamase ALFP_0615 3ec2ab9cf79fc8a963f2acf5da63873b 318 SUPERFAMILY SSF56281 16 310 8.82E-56 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_0615 3ec2ab9cf79fc8a963f2acf5da63873b 318 Gene3D G3DSA:3.60.15.10 11 237 3.5E-42 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_0615 3ec2ab9cf79fc8a963f2acf5da63873b 318 SMART SM00849 33 220 2.4E-11 T 12-10-2018 IPR001279 Metallo-beta-lactamase ALFP_0728 6c9775add5138240386b7c88b2fea34a 138 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 6 133 1.1E-41 T 12-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 ALFP_0728 6c9775add5138240386b7c88b2fea34a 138 SUPERFAMILY SSF54593 8 133 2.69E-35 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_0728 6c9775add5138240386b7c88b2fea34a 138 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 130 6.4E-23 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain ALFP_0728 6c9775add5138240386b7c88b2fea34a 138 ProSitePatterns PS00934 Glyoxalase I signature 1. 12 33 - T 12-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 ALFP_0728 6c9775add5138240386b7c88b2fea34a 138 Gene3D G3DSA:3.10.180.10 1 134 2.1E-41 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_3715 25f189e852e771dd39ec3a30125c635f 323 Gene3D G3DSA:3.40.190.10 124 248 1.6E-85 T 12-10-2018 ALFP_3715 25f189e852e771dd39ec3a30125c635f 323 Gene3D G3DSA:3.40.190.150 29 313 1.6E-85 T 12-10-2018 ALFP_3715 25f189e852e771dd39ec3a30125c635f 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 319 8.7E-61 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_3715 25f189e852e771dd39ec3a30125c635f 323 SUPERFAMILY SSF53850 106 276 2.46E-6 T 12-10-2018 ALFP_3715 25f189e852e771dd39ec3a30125c635f 323 PIRSF PIRSF017082 3 323 2.5E-68 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0617 b280910f93caccd6c1e9b2e5ada208b6 593 Pfam PF07721 Tetratricopeptide repeat 376 398 0.005 T 12-10-2018 IPR011717 Tetratricopeptide TPR-4 GO:0042802 ALFP_0617 b280910f93caccd6c1e9b2e5ada208b6 593 Pfam PF13432 Tetratricopeptide repeat 483 545 2.6E-6 T 12-10-2018 ALFP_0617 b280910f93caccd6c1e9b2e5ada208b6 593 SUPERFAMILY SSF48452 193 366 1.3E-14 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_0617 b280910f93caccd6c1e9b2e5ada208b6 593 Gene3D G3DSA:1.25.40.10 368 492 1.7E-18 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_0617 b280910f93caccd6c1e9b2e5ada208b6 593 Pfam PF14559 Tetratricopeptide repeat 422 482 6.8E-7 T 12-10-2018 ALFP_0617 b280910f93caccd6c1e9b2e5ada208b6 593 Pfam PF14559 Tetratricopeptide repeat 268 324 3.3E-6 T 12-10-2018 ALFP_0617 b280910f93caccd6c1e9b2e5ada208b6 593 Gene3D G3DSA:1.25.40.10 50 367 3.9E-20 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_0617 b280910f93caccd6c1e9b2e5ada208b6 593 SUPERFAMILY SSF48452 417 579 3.9E-27 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_0617 b280910f93caccd6c1e9b2e5ada208b6 593 Gene3D G3DSA:1.25.40.10 493 588 2.5E-14 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_0617 b280910f93caccd6c1e9b2e5ada208b6 593 SMART SM00028 545 578 11.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_0617 b280910f93caccd6c1e9b2e5ada208b6 593 SMART SM00028 443 476 20.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_0617 b280910f93caccd6c1e9b2e5ada208b6 593 SMART SM00028 477 511 1.7 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_0617 b280910f93caccd6c1e9b2e5ada208b6 593 SMART SM00028 292 325 87.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_0617 b280910f93caccd6c1e9b2e5ada208b6 593 SMART SM00028 191 224 24.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_1895 a17c936d7131009698c00aae2a58ecae 233 SMART SM00382 26 227 2.2E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1895 a17c936d7131009698c00aae2a58ecae 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1895 a17c936d7131009698c00aae2a58ecae 233 Gene3D G3DSA:3.40.50.300 1 233 4.3E-62 T 12-10-2018 ALFP_1895 a17c936d7131009698c00aae2a58ecae 233 Pfam PF00005 ABC transporter 17 161 9.3E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1895 a17c936d7131009698c00aae2a58ecae 233 PIRSF PIRSF039137 1 233 1.4E-105 T 12-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 ALFP_1895 a17c936d7131009698c00aae2a58ecae 233 SUPERFAMILY SSF52540 2 231 7.46E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0781 569f9ee3372fbe8083d30de0d40c67f6 733 PRINTS PR01183 Ribonucleotide reductase large chain signature 274 293 5.0E-36 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 ALFP_0781 569f9ee3372fbe8083d30de0d40c67f6 733 PRINTS PR01183 Ribonucleotide reductase large chain signature 487 509 5.0E-36 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 ALFP_0781 569f9ee3372fbe8083d30de0d40c67f6 733 PRINTS PR01183 Ribonucleotide reductase large chain signature 409 420 5.0E-36 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 ALFP_0781 569f9ee3372fbe8083d30de0d40c67f6 733 PRINTS PR01183 Ribonucleotide reductase large chain signature 586 613 5.0E-36 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 ALFP_0781 569f9ee3372fbe8083d30de0d40c67f6 733 PRINTS PR01183 Ribonucleotide reductase large chain signature 449 472 5.0E-36 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 ALFP_0781 569f9ee3372fbe8083d30de0d40c67f6 733 PRINTS PR01183 Ribonucleotide reductase large chain signature 515 538 5.0E-36 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 ALFP_0781 569f9ee3372fbe8083d30de0d40c67f6 733 Gene3D G3DSA:3.20.70.20 54 718 3.3E-157 T 12-10-2018 ALFP_0781 569f9ee3372fbe8083d30de0d40c67f6 733 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 118 195 1.2E-13 T 12-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 ALFP_0781 569f9ee3372fbe8083d30de0d40c67f6 733 SUPERFAMILY SSF51998 198 716 3.66E-167 T 12-10-2018 ALFP_0781 569f9ee3372fbe8083d30de0d40c67f6 733 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 575 597 - T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 ALFP_0781 569f9ee3372fbe8083d30de0d40c67f6 733 Pfam PF03477 ATP cone domain 5 67 6.8E-6 T 12-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 ALFP_0781 569f9ee3372fbe8083d30de0d40c67f6 733 Pfam PF02867 Ribonucleotide reductase, barrel domain 199 707 2.9E-118 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 ALFP_0781 569f9ee3372fbe8083d30de0d40c67f6 733 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 121 711 6.3E-175 T 12-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 ALFP_0781 569f9ee3372fbe8083d30de0d40c67f6 733 SUPERFAMILY SSF48168 2 197 1.31E-65 T 12-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 ALFP_0094 c604e7302c73aad2a28a6b8f5a66e3a0 259 Gene3D G3DSA:3.40.50.300 2 257 3.8E-76 T 12-10-2018 ALFP_0094 c604e7302c73aad2a28a6b8f5a66e3a0 259 SUPERFAMILY SSF52540 6 250 3.67E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0094 c604e7302c73aad2a28a6b8f5a66e3a0 259 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0094 c604e7302c73aad2a28a6b8f5a66e3a0 259 Pfam PF00005 ABC transporter 19 180 1.7E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0094 c604e7302c73aad2a28a6b8f5a66e3a0 259 SMART SM00382 28 228 6.0E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0094 c604e7302c73aad2a28a6b8f5a66e3a0 259 PIRSF PIRSF039085 1 254 5.4E-112 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 ALFP_2109 0daa4eaf05ee3b0a641f9b6d67f31313 485 SMART SM00388 256 321 1.2E-17 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_2109 0daa4eaf05ee3b0a641f9b6d67f31313 485 Gene3D G3DSA:3.30.565.10 341 481 2.1E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_2109 0daa4eaf05ee3b0a641f9b6d67f31313 485 SUPERFAMILY SSF55874 312 479 5.5E-32 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_2109 0daa4eaf05ee3b0a641f9b6d67f31313 485 SUPERFAMILY SSF47384 239 321 1.33E-16 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_2109 0daa4eaf05ee3b0a641f9b6d67f31313 485 Pfam PF08521 Two-component sensor kinase N-terminal 37 179 1.9E-23 T 12-10-2018 IPR013727 Two-component sensor kinase, N-terminal ALFP_2109 0daa4eaf05ee3b0a641f9b6d67f31313 485 SMART SM00387 369 481 1.2E-31 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2109 0daa4eaf05ee3b0a641f9b6d67f31313 485 Gene3D G3DSA:1.10.287.130 207 323 1.9E-18 T 12-10-2018 ALFP_2109 0daa4eaf05ee3b0a641f9b6d67f31313 485 Pfam PF00512 His Kinase A (phospho-acceptor) domain 257 320 1.4E-14 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_2109 0daa4eaf05ee3b0a641f9b6d67f31313 485 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 370 478 5.8E-17 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2109 0daa4eaf05ee3b0a641f9b6d67f31313 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 438 456 1.4E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2109 0daa4eaf05ee3b0a641f9b6d67f31313 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 420 1.4E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2109 0daa4eaf05ee3b0a641f9b6d67f31313 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 434 1.4E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_0364 414deb0b3535a39ff89536f4dea130f4 247 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 230 4.1E-42 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 ALFP_0364 414deb0b3535a39ff89536f4dea130f4 247 SUPERFAMILY SSF52096 2 244 4.98E-64 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_0364 414deb0b3535a39ff89536f4dea130f4 247 Gene3D G3DSA:3.90.226.10 1 247 6.9E-63 T 12-10-2018 ALFP_1627 eebf2635de2f29a799c49658a3ae6cc1 435 SMART SM00345 11 70 1.0E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1627 eebf2635de2f29a799c49658a3ae6cc1 435 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 70 9.6E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1627 eebf2635de2f29a799c49658a3ae6cc1 435 Gene3D G3DSA:3.40.640.10 118 332 1.8E-43 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_1627 eebf2635de2f29a799c49658a3ae6cc1 435 Gene3D G3DSA:1.10.10.10 4 76 4.4E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1627 eebf2635de2f29a799c49658a3ae6cc1 435 Gene3D G3DSA:3.90.1150.10 90 422 1.8E-43 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_1627 eebf2635de2f29a799c49658a3ae6cc1 435 SUPERFAMILY SSF53383 64 433 2.42E-52 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_1627 eebf2635de2f29a799c49658a3ae6cc1 435 SUPERFAMILY SSF46785 9 72 1.5E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1627 eebf2635de2f29a799c49658a3ae6cc1 435 Pfam PF00155 Aminotransferase class I and II 112 425 2.2E-23 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 SMART SM00387 464 570 6.2E-25 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 SMART SM00086 180 222 4.8E-4 T 12-10-2018 IPR001610 PAC motif ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 SUPERFAMILY SSF55785 95 220 7.85E-23 T 12-10-2018 IPR035965 PAS domain superfamily ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 SMART SM00388 352 422 7.7E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 107 229 1.9E-26 T 12-10-2018 IPR000014 PAS domain ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 Pfam PF08448 PAS fold 115 224 1.6E-16 T 12-10-2018 IPR013656 PAS fold-4 ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 465 567 4.7E-14 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 Pfam PF13188 PAS domain 234 290 0.0011 T 12-10-2018 IPR000014 PAS domain ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 Gene3D G3DSA:3.30.450.20 106 235 1.5E-25 T 12-10-2018 ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 SUPERFAMILY SSF55874 411 572 1.18E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 Gene3D G3DSA:1.10.287.130 357 419 1.6E-18 T 12-10-2018 ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 SMART SM00091 106 173 1.6E-8 T 12-10-2018 IPR000014 PAS domain ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 SMART SM00091 234 308 53.0 T 12-10-2018 IPR000014 PAS domain ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 Pfam PF00512 His Kinase A (phospho-acceptor) domain 353 419 2.4E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 SUPERFAMILY SSF55785 219 328 6.98E-8 T 12-10-2018 IPR035965 PAS domain superfamily ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 Gene3D G3DSA:3.30.565.10 422 575 3.0E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 519 529 7.5E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 554 567 7.5E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 530 548 7.5E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 503 517 7.5E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1986 0da2c456a65d949a75e269f8bfc0d8e5 585 SUPERFAMILY SSF47384 340 419 2.35E-9 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_0129 fb1c011bb40ac913f4279aaa63de76e8 165 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 28 153 4.1E-28 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_2798 f77b01df9bb147670427cb33af31ebbf 111 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 10 107 2.4E-18 T 12-10-2018 IPR008407 Branched-chain amino acid transport, AzlD ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 Gene3D G3DSA:3.40.50.670 412 605 2.0E-73 T 12-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 Pfam PF00204 DNA gyrase B 231 404 4.6E-58 T 12-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 Gene3D G3DSA:3.40.50.670 701 815 4.5E-25 T 12-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 SUPERFAMILY SSF54211 231 406 3.79E-56 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 SMART SM00433 43 810 6.1E-254 T 12-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 40 160 4.0E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 SUPERFAMILY SSF56719 408 808 3.14E-84 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 Gene3D G3DSA:3.30.565.10 10 230 1.7E-87 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 747 806 3.0E-28 T 12-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR00418 DNA topoisomerase II family signature 518 535 2.6E-67 T 12-10-2018 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR00418 DNA topoisomerase II family signature 123 137 2.6E-67 T 12-10-2018 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR00418 DNA topoisomerase II family signature 434 448 2.6E-67 T 12-10-2018 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR00418 DNA topoisomerase II family signature 500 516 2.6E-67 T 12-10-2018 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR00418 DNA topoisomerase II family signature 43 58 2.6E-67 T 12-10-2018 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR00418 DNA topoisomerase II family signature 78 91 2.6E-67 T 12-10-2018 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR00418 DNA topoisomerase II family signature 282 295 2.6E-67 T 12-10-2018 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR00418 DNA topoisomerase II family signature 749 765 2.6E-67 T 12-10-2018 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR00418 DNA topoisomerase II family signature 538 550 2.6E-67 T 12-10-2018 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 Pfam PF01751 Toprim domain 433 544 3.0E-18 T 12-10-2018 IPR006171 TOPRIM domain ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 SMART SM00387 39 186 1.4E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 13 817 2.4E-292 T 12-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 Gene3D G3DSA:3.30.230.10 231 406 1.3E-70 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 SUPERFAMILY SSF55874 13 225 2.88E-66 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 10 817 97.333 T 12-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 ProSitePatterns PS00177 DNA topoisomerase II signature. 436 444 - T 12-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR01159 DNA gyrase subunit B signature 230 252 2.4E-75 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR01159 DNA gyrase subunit B signature 484 493 2.4E-75 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR01159 DNA gyrase subunit B signature 206 219 2.4E-75 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR01159 DNA gyrase subunit B signature 786 802 2.4E-75 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR01159 DNA gyrase subunit B signature 388 408 2.4E-75 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR01159 DNA gyrase subunit B signature 13 23 2.4E-75 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR01159 DNA gyrase subunit B signature 191 206 2.4E-75 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR01159 DNA gyrase subunit B signature 256 274 2.4E-75 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR01159 DNA gyrase subunit B signature 326 342 2.4E-75 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR01159 DNA gyrase subunit B signature 770 782 2.4E-75 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ALFP_0003 74c9b7391583d110d8006e4f6292dc81 817 PRINTS PR01159 DNA gyrase subunit B signature 374 388 2.4E-75 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ALFP_2046 f35a91f48b8cc594372c625de55987f2 532 Pfam PF00005 ABC transporter 337 468 6.5E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2046 f35a91f48b8cc594372c625de55987f2 532 ProSitePatterns PS00211 ABC transporters family signature. 440 454 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_2046 f35a91f48b8cc594372c625de55987f2 532 SUPERFAMILY SSF52540 297 523 5.69E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2046 f35a91f48b8cc594372c625de55987f2 532 Pfam PF00005 ABC transporter 18 184 1.9E-19 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2046 f35a91f48b8cc594372c625de55987f2 532 Pfam PF12848 ABC transporter 224 310 1.3E-17 T 12-10-2018 IPR032781 ABC-transporter extension domain ALFP_2046 f35a91f48b8cc594372c625de55987f2 532 Gene3D G3DSA:3.40.50.300 284 532 7.5E-57 T 12-10-2018 ALFP_2046 f35a91f48b8cc594372c625de55987f2 532 SUPERFAMILY SSF52540 6 237 2.21E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2046 f35a91f48b8cc594372c625de55987f2 532 SMART SM00382 345 514 7.7E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2046 f35a91f48b8cc594372c625de55987f2 532 SMART SM00382 26 238 1.1E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2046 f35a91f48b8cc594372c625de55987f2 532 Gene3D G3DSA:3.40.50.300 3 280 5.2E-57 T 12-10-2018 ALFP_2015 24bca765b980f00c0a76c72418039c71 214 SMART SM00072 6 188 6.9E-60 T 12-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit ALFP_2015 24bca765b980f00c0a76c72418039c71 214 SUPERFAMILY SSF52540 5 191 6.21E-66 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2015 24bca765b980f00c0a76c72418039c71 214 Gene3D G3DSA:3.30.63.10 38 97 4.4E-66 T 12-10-2018 ALFP_2015 24bca765b980f00c0a76c72418039c71 214 Pfam PF00625 Guanylate kinase 10 186 6.2E-48 T 12-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit ALFP_2015 24bca765b980f00c0a76c72418039c71 214 Hamap MF_00328 Guanylate kinase [gmk]. 5 188 36.448 T 12-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 ALFP_2015 24bca765b980f00c0a76c72418039c71 214 Gene3D G3DSA:3.40.50.300 11 184 4.4E-66 T 12-10-2018 ALFP_2015 24bca765b980f00c0a76c72418039c71 214 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 8 185 2.1E-72 T 12-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 ALFP_2015 24bca765b980f00c0a76c72418039c71 214 ProSitePatterns PS00856 Guanylate kinase-like signature. 41 58 - T 12-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 ALFP_1901 31e1f5f2b663ae0b8026440c21ba91da 466 Gene3D G3DSA:1.20.200.10 142 409 1.5E-110 T 12-10-2018 ALFP_1901 31e1f5f2b663ae0b8026440c21ba91da 466 ProSitePatterns PS00163 Fumarate lyases signature. 320 329 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 ALFP_1901 31e1f5f2b663ae0b8026440c21ba91da 466 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 6 462 8.1E-218 T 12-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 ALFP_1901 31e1f5f2b663ae0b8026440c21ba91da 466 PRINTS PR00149 Fumarate lyase superfamily signature 183 201 7.5E-34 T 12-10-2018 IPR000362 Fumarate lyase family ALFP_1901 31e1f5f2b663ae0b8026440c21ba91da 466 PRINTS PR00149 Fumarate lyase superfamily signature 274 301 7.5E-34 T 12-10-2018 IPR000362 Fumarate lyase family ALFP_1901 31e1f5f2b663ae0b8026440c21ba91da 466 PRINTS PR00149 Fumarate lyase superfamily signature 137 155 7.5E-34 T 12-10-2018 IPR000362 Fumarate lyase family ALFP_1901 31e1f5f2b663ae0b8026440c21ba91da 466 PRINTS PR00149 Fumarate lyase superfamily signature 320 336 7.5E-34 T 12-10-2018 IPR000362 Fumarate lyase family ALFP_1901 31e1f5f2b663ae0b8026440c21ba91da 466 Pfam PF00206 Lyase 13 345 1.3E-110 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal ALFP_1901 31e1f5f2b663ae0b8026440c21ba91da 466 PRINTS PR00145 Argininosuccinate lyase family signature 178 198 9.1E-7 T 12-10-2018 ALFP_1901 31e1f5f2b663ae0b8026440c21ba91da 466 PRINTS PR00145 Argininosuccinate lyase family signature 320 336 9.1E-7 T 12-10-2018 ALFP_1901 31e1f5f2b663ae0b8026440c21ba91da 466 PRINTS PR00145 Argininosuccinate lyase family signature 136 158 9.1E-7 T 12-10-2018 ALFP_1901 31e1f5f2b663ae0b8026440c21ba91da 466 SUPERFAMILY SSF48557 5 463 6.77E-154 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 ALFP_1901 31e1f5f2b663ae0b8026440c21ba91da 466 Pfam PF10415 Fumarase C C-terminus 411 464 1.1E-23 T 12-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 ALFP_1901 31e1f5f2b663ae0b8026440c21ba91da 466 Gene3D G3DSA:1.10.275.10 3 141 8.1E-57 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal ALFP_1901 31e1f5f2b663ae0b8026440c21ba91da 466 Gene3D G3DSA:1.10.40.30 411 466 2.7E-26 T 12-10-2018 ALFP_1901 31e1f5f2b663ae0b8026440c21ba91da 466 Hamap MF_00743 Fumarate hydratase class II [fumC]. 5 465 88.678 T 12-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 ALFP_1398 7037fc992b2bfaeffe91c8c4749ed635 313 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 56 63 - T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ALFP_1398 7037fc992b2bfaeffe91c8c4749ed635 313 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 10 308 77.151 T 12-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 ALFP_1398 7037fc992b2bfaeffe91c8c4749ed635 313 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 56 75 4.0E-28 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ALFP_1398 7037fc992b2bfaeffe91c8c4749ed635 313 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 138 149 4.0E-28 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ALFP_1398 7037fc992b2bfaeffe91c8c4749ed635 313 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 260 269 4.0E-28 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ALFP_1398 7037fc992b2bfaeffe91c8c4749ed635 313 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 272 295 4.0E-28 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ALFP_1398 7037fc992b2bfaeffe91c8c4749ed635 313 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 157 305 3.5E-48 T 12-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 ALFP_1398 7037fc992b2bfaeffe91c8c4749ed635 313 Gene3D G3DSA:3.40.50.1370 12 304 1.3E-112 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 ALFP_1398 7037fc992b2bfaeffe91c8c4749ed635 313 PRINTS PR00102 Ornithine carbamoyltransferase signature 87 100 5.0E-30 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 ALFP_1398 7037fc992b2bfaeffe91c8c4749ed635 313 PRINTS PR00102 Ornithine carbamoyltransferase signature 224 234 5.0E-30 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 ALFP_1398 7037fc992b2bfaeffe91c8c4749ed635 313 PRINTS PR00102 Ornithine carbamoyltransferase signature 127 141 5.0E-30 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 ALFP_1398 7037fc992b2bfaeffe91c8c4749ed635 313 PRINTS PR00102 Ornithine carbamoyltransferase signature 286 297 5.0E-30 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 ALFP_1398 7037fc992b2bfaeffe91c8c4749ed635 313 PRINTS PR00102 Ornithine carbamoyltransferase signature 54 68 5.0E-30 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 ALFP_1398 7037fc992b2bfaeffe91c8c4749ed635 313 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 11 307 5.2E-114 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 ALFP_1398 7037fc992b2bfaeffe91c8c4749ed635 313 Gene3D G3DSA:3.40.50.1370 141 294 1.3E-112 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 ALFP_1398 7037fc992b2bfaeffe91c8c4749ed635 313 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 11 151 9.1E-51 T 12-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 ALFP_1398 7037fc992b2bfaeffe91c8c4749ed635 313 SUPERFAMILY SSF53671 10 307 1.7E-104 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 ALFP_0058 9fb2229dc1d24d39e805cb8b7d78c925 325 SUPERFAMILY SSF53850 95 284 8.14E-12 T 12-10-2018 ALFP_0058 9fb2229dc1d24d39e805cb8b7d78c925 325 PIRSF PIRSF017082 1 325 2.8E-77 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0058 9fb2229dc1d24d39e805cb8b7d78c925 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 321 1.6E-76 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0058 9fb2229dc1d24d39e805cb8b7d78c925 325 Gene3D G3DSA:3.40.190.10 125 248 1.2E-106 T 12-10-2018 ALFP_0058 9fb2229dc1d24d39e805cb8b7d78c925 325 Gene3D G3DSA:3.40.190.150 27 318 1.2E-106 T 12-10-2018 ALFP_1178 2afe2b0b701a0f225a1892e44cfe8a98 497 SUPERFAMILY SSF53067 252 494 2.33E-76 T 12-10-2018 ALFP_1178 2afe2b0b701a0f225a1892e44cfe8a98 497 SUPERFAMILY SSF53067 3 252 7.2E-92 T 12-10-2018 ALFP_1178 2afe2b0b701a0f225a1892e44cfe8a98 497 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 3 495 5.4E-205 T 12-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 ALFP_1178 2afe2b0b701a0f225a1892e44cfe8a98 497 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 359 379 - T 12-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 ALFP_1178 2afe2b0b701a0f225a1892e44cfe8a98 497 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 258 450 2.5E-56 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 ALFP_1178 2afe2b0b701a0f225a1892e44cfe8a98 497 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 249 6.4E-76 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 ALFP_1178 2afe2b0b701a0f225a1892e44cfe8a98 497 PIRSF PIRSF000538 1 497 6.2E-168 T 12-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 ALFP_1178 2afe2b0b701a0f225a1892e44cfe8a98 497 Gene3D G3DSA:3.30.420.40 251 497 2.4E-81 T 12-10-2018 ALFP_1178 2afe2b0b701a0f225a1892e44cfe8a98 497 Gene3D G3DSA:3.30.420.40 1 250 2.5E-106 T 12-10-2018 ALFP_1178 2afe2b0b701a0f225a1892e44cfe8a98 497 Hamap MF_00186 Glycerol kinase [glpK]. 1 497 53.013 T 12-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 ALFP_0575 57ffdfbd1e893ab4d47b2d121062d2f2 757 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 151 584 2.6E-150 T 12-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 ALFP_0575 57ffdfbd1e893ab4d47b2d121062d2f2 757 Gene3D G3DSA:3.40.50.2300 5 150 1.9E-20 T 12-10-2018 ALFP_0575 57ffdfbd1e893ab4d47b2d121062d2f2 757 PIRSF PIRSF009393 1 753 8.9E-274 T 12-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 ALFP_0575 57ffdfbd1e893ab4d47b2d121062d2f2 757 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 392 406 - T 12-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 ALFP_0575 57ffdfbd1e893ab4d47b2d121062d2f2 757 Gene3D G3DSA:3.40.640.10 151 456 2.3E-96 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_0575 57ffdfbd1e893ab4d47b2d121062d2f2 757 Gene3D G3DSA:3.90.100.10 631 751 3.8E-37 T 12-10-2018 ALFP_0575 57ffdfbd1e893ab4d47b2d121062d2f2 757 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 20 145 1.2E-38 T 12-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 ALFP_0575 57ffdfbd1e893ab4d47b2d121062d2f2 757 SUPERFAMILY SSF53383 151 604 2.52E-115 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_0575 57ffdfbd1e893ab4d47b2d121062d2f2 757 Gene3D G3DSA:3.90.1150.10 459 630 2.9E-69 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_0575 57ffdfbd1e893ab4d47b2d121062d2f2 757 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 611 735 2.3E-44 T 12-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 ALFP_0575 57ffdfbd1e893ab4d47b2d121062d2f2 757 SUPERFAMILY SSF55904 606 750 1.02E-43 T 12-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 ALFP_0156 d99b26dd3fedb45860539f200ead3baa 470 Gene3D G3DSA:3.30.499.20 6 288 1.8E-91 T 12-10-2018 ALFP_0156 d99b26dd3fedb45860539f200ead3baa 470 Pfam PF00330 Aconitase family (aconitate hydratase) 9 459 2.3E-153 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_0156 d99b26dd3fedb45860539f200ead3baa 470 PRINTS PR00415 Aconitase family signature 110 118 8.5E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_0156 d99b26dd3fedb45860539f200ead3baa 470 PRINTS PR00415 Aconitase family signature 344 355 8.5E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_0156 d99b26dd3fedb45860539f200ead3baa 470 PRINTS PR00415 Aconitase family signature 135 150 8.5E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_0156 d99b26dd3fedb45860539f200ead3baa 470 PRINTS PR00415 Aconitase family signature 401 414 8.5E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_0156 d99b26dd3fedb45860539f200ead3baa 470 PRINTS PR00415 Aconitase family signature 197 210 8.5E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_0156 d99b26dd3fedb45860539f200ead3baa 470 PRINTS PR00415 Aconitase family signature 211 224 8.5E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_0156 d99b26dd3fedb45860539f200ead3baa 470 PRINTS PR00415 Aconitase family signature 121 134 8.5E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_0156 d99b26dd3fedb45860539f200ead3baa 470 PRINTS PR00415 Aconitase family signature 84 97 8.5E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_0156 d99b26dd3fedb45860539f200ead3baa 470 PRINTS PR00415 Aconitase family signature 288 302 8.5E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_0156 d99b26dd3fedb45860539f200ead3baa 470 ProSitePatterns PS01244 Aconitase family signature 2. 401 414 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 ALFP_0156 d99b26dd3fedb45860539f200ead3baa 470 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 4 466 1.1E-214 T 12-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 ALFP_0156 d99b26dd3fedb45860539f200ead3baa 470 SUPERFAMILY SSF53732 5 468 5.1E-156 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 ALFP_0156 d99b26dd3fedb45860539f200ead3baa 470 Gene3D G3DSA:3.30.499.10 327 470 1.2E-49 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 ALFP_0156 d99b26dd3fedb45860539f200ead3baa 470 ProSitePatterns PS00450 Aconitase family signature 1. 340 356 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 ALFP_0156 d99b26dd3fedb45860539f200ead3baa 470 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 3 468 56.23 T 12-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 ALFP_2916 e7af6a1ca7decf6026e9d93e5f6a4dbc 946 Gene3D G3DSA:1.10.760.10 817 945 3.3E-18 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2916 e7af6a1ca7decf6026e9d93e5f6a4dbc 946 SUPERFAMILY SSF46626 838 935 3.1E-16 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2916 e7af6a1ca7decf6026e9d93e5f6a4dbc 946 SUPERFAMILY SSF56003 119 496 7.24E-26 T 12-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 ALFP_2916 e7af6a1ca7decf6026e9d93e5f6a4dbc 946 Gene3D G3DSA:3.30.365.10 286 406 1.1E-14 T 12-10-2018 ALFP_2916 e7af6a1ca7decf6026e9d93e5f6a4dbc 946 Gene3D G3DSA:1.10.760.10 509 663 1.5E-9 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2916 e7af6a1ca7decf6026e9d93e5f6a4dbc 946 Gene3D G3DSA:1.10.760.10 676 816 6.3E-8 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2916 e7af6a1ca7decf6026e9d93e5f6a4dbc 946 SMART SM01008 8 94 0.0053 T 12-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead ALFP_2916 e7af6a1ca7decf6026e9d93e5f6a4dbc 946 SUPERFAMILY SSF46626 692 810 2.27E-14 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2916 e7af6a1ca7decf6026e9d93e5f6a4dbc 946 Pfam PF00034 Cytochrome c 555 654 8.2E-7 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2916 e7af6a1ca7decf6026e9d93e5f6a4dbc 946 Pfam PF00034 Cytochrome c 703 806 3.7E-4 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2916 e7af6a1ca7decf6026e9d93e5f6a4dbc 946 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 837 918 2.5E-8 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2916 e7af6a1ca7decf6026e9d93e5f6a4dbc 946 SUPERFAMILY SSF46626 553 676 7.84E-22 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1607 0dc3c561d9c2084da2c6ad58760cd1fc 267 Pfam PF00561 alpha/beta hydrolase fold 28 253 6.7E-20 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_1607 0dc3c561d9c2084da2c6ad58760cd1fc 267 Gene3D G3DSA:3.40.50.1820 12 265 2.1E-65 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1607 0dc3c561d9c2084da2c6ad58760cd1fc 267 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 22 264 2.5E-85 T 12-10-2018 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 ALFP_1607 0dc3c561d9c2084da2c6ad58760cd1fc 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 1.2E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_1607 0dc3c561d9c2084da2c6ad58760cd1fc 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 211 225 1.2E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_1607 0dc3c561d9c2084da2c6ad58760cd1fc 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 51 66 1.2E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_1607 0dc3c561d9c2084da2c6ad58760cd1fc 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 95 108 1.2E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_1607 0dc3c561d9c2084da2c6ad58760cd1fc 267 SUPERFAMILY SSF53474 18 265 3.71E-62 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1607 0dc3c561d9c2084da2c6ad58760cd1fc 267 PRINTS PR00412 Epoxide hydrolase signature 209 225 1.8E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 ALFP_1607 0dc3c561d9c2084da2c6ad58760cd1fc 267 PRINTS PR00412 Epoxide hydrolase signature 51 66 1.8E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 ALFP_1607 0dc3c561d9c2084da2c6ad58760cd1fc 267 PRINTS PR00412 Epoxide hydrolase signature 241 263 1.8E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 ALFP_3565 d2f3ec8ee8cc89f78ec06c9fa10c59a4 269 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 166 176 - T 12-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 ALFP_3565 d2f3ec8ee8cc89f78ec06c9fa10c59a4 269 Gene3D G3DSA:3.90.190.10 33 268 5.2E-55 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like ALFP_3565 d2f3ec8ee8cc89f78ec06c9fa10c59a4 269 Pfam PF13350 Tyrosine phosphatase family 33 268 4.1E-62 T 12-10-2018 IPR026893 Tyrosine/serine-protein phosphatase IphP-type ALFP_3565 d2f3ec8ee8cc89f78ec06c9fa10c59a4 269 SUPERFAMILY SSF52799 33 267 2.4E-48 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like ALFP_1060 6a9b8f6bac25f8a8fe379efa551cad52 330 Gene3D G3DSA:3.40.190.170 19 330 4.7E-59 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_1060 6a9b8f6bac25f8a8fe379efa551cad52 330 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 33 304 4.8E-42 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_3073 5e16102bce15ce59d2345993e95a21b3 354 Gene3D G3DSA:3.30.360.10 154 322 2.9E-127 T 12-10-2018 ALFP_3073 5e16102bce15ce59d2345993e95a21b3 354 Gene3D G3DSA:3.40.50.720 10 340 2.9E-127 T 12-10-2018 ALFP_3073 5e16102bce15ce59d2345993e95a21b3 354 SUPERFAMILY SSF55347 156 322 1.7E-47 T 12-10-2018 ALFP_3073 5e16102bce15ce59d2345993e95a21b3 354 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 151 167 - T 12-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 ALFP_3073 5e16102bce15ce59d2345993e95a21b3 354 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 10 148 9.7E-38 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 ALFP_3073 5e16102bce15ce59d2345993e95a21b3 354 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 9 354 1.5E-127 T 12-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 ALFP_3073 5e16102bce15ce59d2345993e95a21b3 354 SUPERFAMILY SSF51735 8 173 2.75E-56 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3073 5e16102bce15ce59d2345993e95a21b3 354 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 174 325 1.3E-16 T 12-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 ALFP_3073 5e16102bce15ce59d2345993e95a21b3 354 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 9 348 42.518 T 12-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 ALFP_3073 5e16102bce15ce59d2345993e95a21b3 354 SMART SM00859 10 148 4.7E-59 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 ALFP_1121 d398c3e3ccd367d29150c4e92deba9d5 239 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 44 233 5.1E-38 T 12-10-2018 ALFP_1121 d398c3e3ccd367d29150c4e92deba9d5 239 SUPERFAMILY SSF56112 58 234 1.24E-18 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily ALFP_1121 d398c3e3ccd367d29150c4e92deba9d5 239 Gene3D G3DSA:1.10.510.10 152 239 3.5E-11 T 12-10-2018 ALFP_1121 d398c3e3ccd367d29150c4e92deba9d5 239 Hamap MF_00521 3-deoxy-D-manno-octulosonic acid kinase [kdkA]. 6 239 24.162 T 12-10-2018 IPR022826 3-deoxy-D-manno-octulosonic acid kinase GO:0016773 KEGG: 00540+2.7.1.166|MetaCyc: PWY-7675|MetaCyc: PWY-7676 ALFP_2657 84af627b3d19dbad15b180e0640d73bf 337 Pfam PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding 7 70 4.9E-7 T 12-10-2018 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain GO:0003677|GO:0006355 ALFP_2657 84af627b3d19dbad15b180e0640d73bf 337 SUPERFAMILY SSF46785 1 77 8.04E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2657 84af627b3d19dbad15b180e0640d73bf 337 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 2 330 9.0E-92 T 12-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 ALFP_2657 84af627b3d19dbad15b180e0640d73bf 337 Gene3D G3DSA:3.30.390.60 123 221 1.1E-37 T 12-10-2018 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily ALFP_2657 84af627b3d19dbad15b180e0640d73bf 337 Pfam PF01628 HrcA protein C terminal domain 101 317 2.7E-57 T 12-10-2018 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 ALFP_2657 84af627b3d19dbad15b180e0640d73bf 337 SUPERFAMILY SSF55781 68 333 1.02E-60 T 12-10-2018 ALFP_2657 84af627b3d19dbad15b180e0640d73bf 337 Gene3D G3DSA:3.30.450.40 102 330 1.1E-37 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_2657 84af627b3d19dbad15b180e0640d73bf 337 PIRSF PIRSF005485 1 335 1.1E-104 T 12-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 ALFP_2657 84af627b3d19dbad15b180e0640d73bf 337 Gene3D G3DSA:1.10.10.10 1 81 1.9E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2657 84af627b3d19dbad15b180e0640d73bf 337 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 1 324 25.952 T 12-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 ALFP_2475 79335dee147b809059c2618dd8b940cb 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 54 6.2E-25 T 12-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2475 79335dee147b809059c2618dd8b940cb 55 Gene3D G3DSA:2.20.28.120 1 55 2.5E-29 T 12-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2475 79335dee147b809059c2618dd8b940cb 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 14.811 T 12-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2475 79335dee147b809059c2618dd8b940cb 55 SUPERFAMILY SSF57829 1 53 1.1E-19 T 12-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 ALFP_2475 79335dee147b809059c2618dd8b940cb 55 Pfam PF00471 Ribosomal protein L33 7 53 3.8E-18 T 12-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2475 79335dee147b809059c2618dd8b940cb 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 12-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_2050 4329f204f5a058d9b0967b4b77ffdda3 253 Pfam PF01061 ABC-2 type transporter 5 216 7.6E-35 T 12-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 ALFP_2050 4329f204f5a058d9b0967b4b77ffdda3 253 PIRSF PIRSF006648 10 252 1.5E-30 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 ALFP_2050 4329f204f5a058d9b0967b4b77ffdda3 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 99 124 4.1E-11 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 ALFP_2050 4329f204f5a058d9b0967b4b77ffdda3 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 193 212 4.1E-11 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 ALFP_2050 4329f204f5a058d9b0967b4b77ffdda3 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 173 192 4.1E-11 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 ALFP_2050 4329f204f5a058d9b0967b4b77ffdda3 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 21 42 4.1E-11 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 ALFP_2050 4329f204f5a058d9b0967b4b77ffdda3 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 136 160 4.1E-11 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 769 847 1.5E-26 T 12-10-2018 IPR019489 Clp ATPase, C-terminal ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 Pfam PF07724 AAA domain (Cdc48 subfamily) 600 763 2.3E-57 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 Gene3D G3DSA:3.40.50.300 343 548 1.9E-66 T 12-10-2018 ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 SUPERFAMILY SSF81923 4 141 4.51E-36 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 Gene3D G3DSA:1.10.8.60 769 862 1.5E-28 T 12-10-2018 ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 Gene3D G3DSA:1.10.1780.10 1 147 5.7E-32 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 95 145 9.7E-11 T 12-10-2018 IPR004176 Clp, N-terminal ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 9.8E-10 T 12-10-2018 IPR004176 Clp, N-terminal ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 Gene3D G3DSA:3.40.50.300 148 342 6.4E-74 T 12-10-2018 ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 Gene3D G3DSA:3.40.50.300 553 767 9.0E-88 T 12-10-2018 ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 858 0.0 T 12-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 SUPERFAMILY SSF52540 159 548 2.01E-98 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 SMART SM01086 769 858 6.2E-39 T 12-10-2018 IPR019489 Clp ATPase, C-terminal ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 12-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 605 623 6.9E-43 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 712 726 6.9E-43 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 650 668 6.9E-43 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 679 697 6.9E-43 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 SUPERFAMILY SSF52540 550 858 2.41E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 SMART SM00382 198 344 7.3E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 SMART SM00382 601 755 1.5E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 336 9.9E-14 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 ALFP_2267 8a5524f1a5f2811999fedea25fa02da8 863 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 635 653 - T 12-10-2018 IPR028299 ClpA/B, conserved site 2 ALFP_3585 35b05f8df859862a85c5b17c6653c2a3 182 PRINTS PR00601 Bacterioferritin signature 80 100 5.8E-7 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_3585 35b05f8df859862a85c5b17c6653c2a3 182 PRINTS PR00601 Bacterioferritin signature 39 58 5.8E-7 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_3585 35b05f8df859862a85c5b17c6653c2a3 182 PRINTS PR00601 Bacterioferritin signature 170 182 5.8E-7 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_3585 35b05f8df859862a85c5b17c6653c2a3 182 PIRSF PIRSF018063 19 182 1.6E-55 T 12-10-2018 IPR014490 DNA-binding protein from starved cells-like ALFP_3585 35b05f8df859862a85c5b17c6653c2a3 182 SUPERFAMILY SSF47240 39 181 4.7E-40 T 12-10-2018 IPR009078 Ferritin-like superfamily ALFP_3585 35b05f8df859862a85c5b17c6653c2a3 182 Gene3D G3DSA:1.20.1260.10 33 182 6.2E-53 T 12-10-2018 IPR012347 Ferritin-like ALFP_3585 35b05f8df859862a85c5b17c6653c2a3 182 Pfam PF00210 Ferritin-like domain 44 181 3.3E-28 T 12-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 ALFP_2450 40d3555d4774831341d3106910088e02 205 TIGRFAM TIGR00172 maf: septum formation protein Maf 5 194 2.5E-42 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 ALFP_2450 40d3555d4774831341d3106910088e02 205 SUPERFAMILY SSF52972 3 194 6.15E-51 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like ALFP_2450 40d3555d4774831341d3106910088e02 205 PIRSF PIRSF006305 3 203 5.3E-47 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 ALFP_2450 40d3555d4774831341d3106910088e02 205 Gene3D G3DSA:3.90.950.10 2 201 9.0E-59 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like ALFP_2450 40d3555d4774831341d3106910088e02 205 Hamap MF_00528 Septum formation protein Maf [maf]. 5 201 27.772 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 ALFP_2450 40d3555d4774831341d3106910088e02 205 Pfam PF02545 Maf-like protein 6 195 3.4E-48 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 ALFP_1698 b5a66f97df0afdf5bac311fd5d5ce8d1 320 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 128 301 2.6E-75 T 12-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 ALFP_1698 b5a66f97df0afdf5bac311fd5d5ce8d1 320 Hamap MF_00162 Glutathione synthetase [gshB]. 1 320 150.727 T 12-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 ALFP_1698 b5a66f97df0afdf5bac311fd5d5ce8d1 320 SUPERFAMILY SSF52440 1 126 9.49E-31 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily ALFP_1698 b5a66f97df0afdf5bac311fd5d5ce8d1 320 Gene3D G3DSA:3.30.470.20 119 299 3.1E-101 T 12-10-2018 ALFP_1698 b5a66f97df0afdf5bac311fd5d5ce8d1 320 SUPERFAMILY SSF56059 128 315 2.6E-59 T 12-10-2018 ALFP_1698 b5a66f97df0afdf5bac311fd5d5ce8d1 320 TIGRFAM TIGR01380 glut_syn: glutathione synthase 1 316 1.2E-120 T 12-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 ALFP_1698 b5a66f97df0afdf5bac311fd5d5ce8d1 320 Gene3D G3DSA:3.30.1490.20 141 205 3.1E-101 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 ALFP_1698 b5a66f97df0afdf5bac311fd5d5ce8d1 320 Gene3D G3DSA:3.40.50.20 6 118 3.1E-101 T 12-10-2018 ALFP_1698 b5a66f97df0afdf5bac311fd5d5ce8d1 320 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 1 124 4.3E-35 T 12-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 ALFP_3164 38c5b6f5c544ecc73f32220bba554c39 381 Gene3D G3DSA:2.60.40.420 41 197 3.0E-41 T 12-10-2018 IPR008972 Cupredoxin ALFP_3164 38c5b6f5c544ecc73f32220bba554c39 381 Pfam PF07732 Multicopper oxidase 92 198 2.6E-11 T 12-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 ALFP_3164 38c5b6f5c544ecc73f32220bba554c39 381 Pfam PF00394 Multicopper oxidase 214 365 1.6E-17 T 12-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 ALFP_3164 38c5b6f5c544ecc73f32220bba554c39 381 SUPERFAMILY SSF49503 51 202 2.65E-35 T 12-10-2018 IPR008972 Cupredoxin ALFP_3164 38c5b6f5c544ecc73f32220bba554c39 381 TIGRFAM TIGR02376 Cu_nitrite_red: nitrite reductase, copper-containing 52 376 1.7E-152 T 12-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 ALFP_3164 38c5b6f5c544ecc73f32220bba554c39 381 SUPERFAMILY SSF49503 206 374 8.6E-72 T 12-10-2018 IPR008972 Cupredoxin ALFP_3164 38c5b6f5c544ecc73f32220bba554c39 381 Gene3D G3DSA:2.60.40.420 198 378 9.7E-53 T 12-10-2018 IPR008972 Cupredoxin ALFP_3164 38c5b6f5c544ecc73f32220bba554c39 381 PRINTS PR00695 Copper containing nitrite reductase signature 162 177 2.9E-54 T 12-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 ALFP_3164 38c5b6f5c544ecc73f32220bba554c39 381 PRINTS PR00695 Copper containing nitrite reductase signature 120 137 2.9E-54 T 12-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 ALFP_3164 38c5b6f5c544ecc73f32220bba554c39 381 PRINTS PR00695 Copper containing nitrite reductase signature 102 118 2.9E-54 T 12-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 ALFP_3164 38c5b6f5c544ecc73f32220bba554c39 381 PRINTS PR00695 Copper containing nitrite reductase signature 75 93 2.9E-54 T 12-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 ALFP_3164 38c5b6f5c544ecc73f32220bba554c39 381 PRINTS PR00695 Copper containing nitrite reductase signature 137 156 2.9E-54 T 12-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 ALFP_3164 38c5b6f5c544ecc73f32220bba554c39 381 PRINTS PR00695 Copper containing nitrite reductase signature 180 196 2.9E-54 T 12-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 ALFP_2166 8282a915f417a9110f715ffe130da60b 248 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 3 246 42.324 T 12-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB ALFP_2166 8282a915f417a9110f715ffe130da60b 248 SUPERFAMILY SSF55315 4 75 1.1E-14 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like ALFP_2166 8282a915f417a9110f715ffe130da60b 248 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 3 245 6.2E-73 T 12-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 ALFP_2166 8282a915f417a9110f715ffe130da60b 248 SUPERFAMILY SSF75217 90 246 1.96E-47 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases ALFP_2166 8282a915f417a9110f715ffe130da60b 248 SMART SM00967 5 81 1.5E-11 T 12-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 ALFP_2166 8282a915f417a9110f715ffe130da60b 248 Pfam PF00588 SpoU rRNA Methylase family 99 239 4.3E-37 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 ALFP_2166 8282a915f417a9110f715ffe130da60b 248 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 6 75 5.8E-12 T 12-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 ALFP_2166 8282a915f417a9110f715ffe130da60b 248 Gene3D G3DSA:3.30.1330.30 1 75 2.6E-16 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like ALFP_2166 8282a915f417a9110f715ffe130da60b 248 Gene3D G3DSA:3.40.1280.10 82 246 1.8E-57 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal ALFP_1670 b67a4cd476b2b8295435c182b578b6a0 446 Pfam PF00355 Rieske [2Fe-2S] domain 48 133 7.6E-21 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ALFP_1670 b67a4cd476b2b8295435c182b578b6a0 446 Gene3D G3DSA:3.90.380.10 27 395 1.3E-108 T 12-10-2018 ALFP_1670 b67a4cd476b2b8295435c182b578b6a0 446 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 91 114 - T 12-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 ALFP_1670 b67a4cd476b2b8295435c182b578b6a0 446 SUPERFAMILY SSF55961 167 442 1.33E-67 T 12-10-2018 ALFP_1670 b67a4cd476b2b8295435c182b578b6a0 446 SUPERFAMILY SSF50022 10 167 1.02E-45 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_1670 b67a4cd476b2b8295435c182b578b6a0 446 Gene3D G3DSA:2.102.10.10 48 175 1.3E-108 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_1670 b67a4cd476b2b8295435c182b578b6a0 446 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 63 78 3.0E-46 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_1670 b67a4cd476b2b8295435c182b578b6a0 446 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 105 125 3.0E-46 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_1670 b67a4cd476b2b8295435c182b578b6a0 446 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 192 214 3.0E-46 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_1670 b67a4cd476b2b8295435c182b578b6a0 446 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 33 58 3.0E-46 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_1670 b67a4cd476b2b8295435c182b578b6a0 446 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 151 177 3.0E-46 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_1670 b67a4cd476b2b8295435c182b578b6a0 446 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 84 104 3.0E-46 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_1670 b67a4cd476b2b8295435c182b578b6a0 446 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 199 396 1.9E-17 T 12-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 ALFP_2161 599f2ec15d7c90846bc46b29a177ec50 326 Gene3D G3DSA:3.40.50.720 1 111 1.5E-29 T 12-10-2018 ALFP_2161 599f2ec15d7c90846bc46b29a177ec50 326 SUPERFAMILY SSF75615 114 209 1.96E-23 T 12-10-2018 ALFP_2161 599f2ec15d7c90846bc46b29a177ec50 326 Gene3D G3DSA:3.30.160.110 113 148 2.6E-16 T 12-10-2018 ALFP_2161 599f2ec15d7c90846bc46b29a177ec50 326 Pfam PF13241 Putative NAD(P)-binding 6 115 7.2E-26 T 12-10-2018 ALFP_2161 599f2ec15d7c90846bc46b29a177ec50 326 Pfam PF10414 Sirohaem synthase dimerisation region 150 207 1.5E-14 T 12-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 ALFP_2161 599f2ec15d7c90846bc46b29a177ec50 326 Pfam PF14824 Sirohaem biosynthesis protein central 119 145 9.6E-7 T 12-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 ALFP_2161 599f2ec15d7c90846bc46b29a177ec50 326 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 207 3.1E-64 T 12-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 ALFP_2161 599f2ec15d7c90846bc46b29a177ec50 326 SUPERFAMILY SSF53790 228 268 5.38E-6 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 ALFP_2161 599f2ec15d7c90846bc46b29a177ec50 326 SUPERFAMILY SSF51735 1 109 2.31E-25 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 9.8E-39 T 12-10-2018 ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 149 167 9.8E-39 T 12-10-2018 ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 237 253 9.8E-39 T 12-10-2018 ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 267 289 9.8E-39 T 12-10-2018 ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 9.8E-39 T 12-10-2018 ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 SUPERFAMILY SSF51905 1 314 2.27E-51 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 7.4E-73 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 7.4E-73 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 130 142 7.4E-73 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 108 116 7.4E-73 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 200 216 7.4E-73 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 145 169 7.4E-73 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 277 295 7.4E-73 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 7.4E-73 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 239 260 7.4E-73 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 Gene3D G3DSA:3.50.50.60 119 245 7.8E-118 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 303 1.1E-47 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 Gene3D G3DSA:3.50.50.60 10 313 7.8E-118 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 137 157 - T 12-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 ALFP_2613 57650710d67f5ceb1c174f8c5c408f53 318 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 314 3.1E-116 T 12-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 ALFP_3554 7e0a1120f4fdc67f9ef653673e91d3ac 120 SUPERFAMILY SSF47413 14 78 1.01E-11 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_3554 7e0a1120f4fdc67f9ef653673e91d3ac 120 Pfam PF13560 Helix-turn-helix domain 19 71 9.0E-11 T 12-10-2018 ALFP_3554 7e0a1120f4fdc67f9ef653673e91d3ac 120 Gene3D G3DSA:1.10.260.40 14 85 1.2E-13 T 12-10-2018 ALFP_3554 7e0a1120f4fdc67f9ef653673e91d3ac 120 SMART SM00530 23 78 1.7E-4 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_0813 20b71969c62059a6e6b9ee7c2af6c864 263 Gene3D G3DSA:3.40.190.10 27 260 1.2E-103 T 12-10-2018 ALFP_0813 20b71969c62059a6e6b9ee7c2af6c864 263 Gene3D G3DSA:3.40.190.10 109 213 1.2E-103 T 12-10-2018 ALFP_0813 20b71969c62059a6e6b9ee7c2af6c864 263 SUPERFAMILY SSF53850 27 263 1.05E-86 T 12-10-2018 ALFP_0813 20b71969c62059a6e6b9ee7c2af6c864 263 Pfam PF03180 NLPA lipoprotein 28 263 4.6E-100 T 12-10-2018 IPR004872 Lipoprotein NlpA family ALFP_0813 20b71969c62059a6e6b9ee7c2af6c864 263 PIRSF PIRSF002854 2 263 2.4E-106 T 12-10-2018 IPR004872 Lipoprotein NlpA family ALFP_2028 d32dd4deab559818be7ff8edb1bb1d57 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 104 6.9E-43 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ALFP_2028 d32dd4deab559818be7ff8edb1bb1d57 112 SMART SM00938 4 105 4.3E-66 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ALFP_2028 d32dd4deab559818be7ff8edb1bb1d57 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 12-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 ALFP_2028 d32dd4deab559818be7ff8edb1bb1d57 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 12-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 ALFP_2028 d32dd4deab559818be7ff8edb1bb1d57 112 Gene3D G3DSA:3.30.70.120 1 112 2.0E-47 T 12-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal ALFP_2028 d32dd4deab559818be7ff8edb1bb1d57 112 PRINTS PR00340 P-II protein signature 2 17 7.6E-41 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ALFP_2028 d32dd4deab559818be7ff8edb1bb1d57 112 PRINTS PR00340 P-II protein signature 23 41 7.6E-41 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ALFP_2028 d32dd4deab559818be7ff8edb1bb1d57 112 PRINTS PR00340 P-II protein signature 52 75 7.6E-41 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ALFP_2028 d32dd4deab559818be7ff8edb1bb1d57 112 PRINTS PR00340 P-II protein signature 83 103 7.6E-41 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ALFP_2028 d32dd4deab559818be7ff8edb1bb1d57 112 PIRSF PIRSF039144 1 112 4.1E-55 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ALFP_2028 d32dd4deab559818be7ff8edb1bb1d57 112 SUPERFAMILY SSF54913 1 112 2.7E-45 T 12-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta ALFP_2415 aaf768cba25b9a48c4883baee62c917e 261 Gene3D G3DSA:3.40.50.300 5 260 2.9E-79 T 12-10-2018 ALFP_2415 aaf768cba25b9a48c4883baee62c917e 261 Pfam PF00005 ABC transporter 24 182 5.8E-37 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2415 aaf768cba25b9a48c4883baee62c917e 261 PIRSF PIRSF039085 5 259 3.5E-108 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 ALFP_2415 aaf768cba25b9a48c4883baee62c917e 261 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_2415 aaf768cba25b9a48c4883baee62c917e 261 SUPERFAMILY SSF52540 8 253 3.99E-79 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2415 aaf768cba25b9a48c4883baee62c917e 261 TIGRFAM TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA 9 258 3.9E-119 T 12-10-2018 IPR014343 Ectoine/hydroxyectoine ABC transporter, ATP-binding protein ALFP_2415 aaf768cba25b9a48c4883baee62c917e 261 SMART SM00382 33 231 3.7E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3595 4d640bc816e223b6ce8bc85a01b337d9 374 Gene3D G3DSA:1.10.3210.10 1 372 3.1E-126 T 12-10-2018 ALFP_3595 4d640bc816e223b6ce8bc85a01b337d9 374 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 27 163 6.4E-54 T 12-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 ALFP_3595 4d640bc816e223b6ce8bc85a01b337d9 374 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 4 372 36.475 T 12-10-2018 IPR023023 dNTP triphosphohydrolase, type 2 GO:0016793 ALFP_3595 4d640bc816e223b6ce8bc85a01b337d9 374 Pfam PF01966 HD domain 64 197 4.7E-14 T 12-10-2018 IPR006674 HD domain ALFP_3595 4d640bc816e223b6ce8bc85a01b337d9 374 SUPERFAMILY SSF109604 16 372 2.03E-83 T 12-10-2018 ALFP_3595 4d640bc816e223b6ce8bc85a01b337d9 374 Pfam PF13286 Phosphohydrolase-associated domain 285 369 4.2E-27 T 12-10-2018 IPR026875 Phosphohydrolase-associated domain ALFP_3595 4d640bc816e223b6ce8bc85a01b337d9 374 SMART SM00471 60 208 7.1E-11 T 12-10-2018 IPR003607 HD/PDEase domain ALFP_2669 8d2236f574e754fa264b03796e2c2dc5 223 SUPERFAMILY SSF48008 80 218 7.06E-19 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_2669 8d2236f574e754fa264b03796e2c2dc5 223 Pfam PF07729 FCD domain 85 212 1.6E-15 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_2669 8d2236f574e754fa264b03796e2c2dc5 223 SUPERFAMILY SSF46785 7 78 1.82E-9 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2669 8d2236f574e754fa264b03796e2c2dc5 223 Gene3D G3DSA:1.10.10.10 9 75 1.8E-7 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2669 8d2236f574e754fa264b03796e2c2dc5 223 SMART SM00895 84 213 6.5E-10 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_2669 8d2236f574e754fa264b03796e2c2dc5 223 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 74 4.2E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2669 8d2236f574e754fa264b03796e2c2dc5 223 SMART SM00345 16 74 3.2E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2669 8d2236f574e754fa264b03796e2c2dc5 223 Gene3D G3DSA:1.20.120.530 77 218 3.5E-19 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_2216 a76ea79e636c4e556fac22805ae2e6e7 431 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 12-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 ALFP_2216 a76ea79e636c4e556fac22805ae2e6e7 431 SMART SM00788 4 424 8.8E-292 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 ALFP_2216 a76ea79e636c4e556fac22805ae2e6e7 431 SUPERFAMILY SSF52540 3 429 9.86E-175 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2216 a76ea79e636c4e556fac22805ae2e6e7 431 Gene3D G3DSA:3.40.440.10 6 248 1.8E-99 T 12-10-2018 ALFP_2216 a76ea79e636c4e556fac22805ae2e6e7 431 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 12-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 ALFP_2216 a76ea79e636c4e556fac22805ae2e6e7 431 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 431 207.958 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 ALFP_2216 a76ea79e636c4e556fac22805ae2e6e7 431 Gene3D G3DSA:3.90.170.10 267 431 1.0E-65 T 12-10-2018 ALFP_2216 a76ea79e636c4e556fac22805ae2e6e7 431 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 429 7.0E-175 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 ALFP_2216 a76ea79e636c4e556fac22805ae2e6e7 431 Gene3D G3DSA:1.10.300.10 102 201 1.8E-99 T 12-10-2018 ALFP_2216 a76ea79e636c4e556fac22805ae2e6e7 431 Pfam PF00709 Adenylosuccinate synthetase 6 423 6.2E-174 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 ALFP_2210 9558ae94b40da45b334fe625d9e443de 224 SMART SM00862 147 220 1.3E-12 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_2210 9558ae94b40da45b334fe625d9e443de 224 Gene3D G3DSA:3.40.50.2300 1 121 1.4E-33 T 12-10-2018 ALFP_2210 9558ae94b40da45b334fe625d9e443de 224 SUPERFAMILY SSF52172 1 181 2.7E-35 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_2210 9558ae94b40da45b334fe625d9e443de 224 SMART SM00448 1 113 1.1E-34 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2210 9558ae94b40da45b334fe625d9e443de 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 220 1.8E-12 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_2210 9558ae94b40da45b334fe625d9e443de 224 Gene3D G3DSA:1.10.10.10 125 224 3.0E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2210 9558ae94b40da45b334fe625d9e443de 224 Pfam PF00072 Response regulator receiver domain 3 113 4.2E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_1422 0eb3fec08f08cffb8c9707df97a090e7 1257 Gene3D G3DSA:3.20.20.220 85 178 2.0E-15 T 12-10-2018 ALFP_1422 0eb3fec08f08cffb8c9707df97a090e7 1257 Pfam PF01619 Proline dehydrogenase 261 560 6.9E-101 T 12-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 ALFP_1422 0eb3fec08f08cffb8c9707df97a090e7 1257 Gene3D G3DSA:3.20.20.220 210 597 5.4E-152 T 12-10-2018 ALFP_1422 0eb3fec08f08cffb8c9707df97a090e7 1257 Gene3D G3DSA:3.40.309.10 877 1068 4.6E-145 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_1422 0eb3fec08f08cffb8c9707df97a090e7 1257 PIRSF PIRSF000197 72 1257 0.0 T 12-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 ALFP_1422 0eb3fec08f08cffb8c9707df97a090e7 1257 Pfam PF00171 Aldehyde dehydrogenase family 651 1094 1.0E-114 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_1422 0eb3fec08f08cffb8c9707df97a090e7 1257 Gene3D G3DSA:3.40.605.10 625 1097 4.6E-145 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_1422 0eb3fec08f08cffb8c9707df97a090e7 1257 SUPERFAMILY SSF53720 631 1097 8.38E-128 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_1422 0eb3fec08f08cffb8c9707df97a090e7 1257 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 902 913 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 ALFP_1422 0eb3fec08f08cffb8c9707df97a090e7 1257 Gene3D G3DSA:1.10.1220.10 11 50 1.7E-11 T 12-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 ALFP_1422 0eb3fec08f08cffb8c9707df97a090e7 1257 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 602 1097 2.3E-220 T 12-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 ALFP_1422 0eb3fec08f08cffb8c9707df97a090e7 1257 SUPERFAMILY SSF47598 4 45 5.78E-6 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 ALFP_1422 0eb3fec08f08cffb8c9707df97a090e7 1257 SUPERFAMILY SSF51730 253 602 3.22E-121 T 12-10-2018 IPR029041 FAD-linked oxidoreductase-like ALFP_1422 0eb3fec08f08cffb8c9707df97a090e7 1257 SUPERFAMILY SSF81935 85 252 3.53E-63 T 12-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 ALFP_1422 0eb3fec08f08cffb8c9707df97a090e7 1257 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 139 250 5.4E-47 T 12-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 ProSitePatterns PS01047 Heavy-metal-associated domain. 65 94 - T 12-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 201 797 1.4E-180 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 Gene3D G3DSA:3.40.50.1000 469 739 1.3E-91 T 12-10-2018 IPR023214 HAD superfamily ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 SUPERFAMILY SSF55008 60 127 1.83E-18 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 Gene3D G3DSA:3.30.70.100 1 60 1.7E-18 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 488 502 3.1E-29 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 336 350 3.1E-29 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 710 722 3.1E-29 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 634 644 3.1E-29 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 687 706 3.1E-29 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 612 623 3.1E-29 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 SUPERFAMILY SSF55008 1 57 5.76E-17 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 Pfam PF00122 E1-E2 ATPase 286 467 1.1E-58 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 1 56 7.4E-13 T 12-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 63 122 8.4E-10 T 12-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 SUPERFAMILY SSF81653 288 386 7.32E-30 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 Gene3D G3DSA:3.30.70.100 62 128 7.5E-20 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 490 496 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 SUPERFAMILY SSF81665 252 775 2.48E-14 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 Pfam PF00403 Heavy-metal-associated domain 1 55 8.1E-14 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 Pfam PF00403 Heavy-metal-associated domain 62 121 3.0E-14 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 SUPERFAMILY SSF56784 486 794 2.42E-61 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 Gene3D G3DSA:3.40.1110.10 499 619 1.3E-91 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 219 796 1.4E-191 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 PRINTS PR00943 Copper-transporting ATPase signature 276 294 2.3E-15 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 PRINTS PR00943 Copper-transporting ATPase signature 664 681 2.3E-15 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 PRINTS PR00943 Copper-transporting ATPase signature 409 423 2.3E-15 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 PRINTS PR00943 Copper-transporting ATPase signature 204 223 2.3E-15 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 PRINTS PR00943 Copper-transporting ATPase signature 721 735 2.3E-15 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 PRINTS PR00943 Copper-transporting ATPase signature 256 275 2.3E-15 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 PRINTS PR00943 Copper-transporting ATPase signature 75 89 2.3E-15 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 PRINTS PR00943 Copper-transporting ATPase signature 760 774 2.3E-15 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 PRINTS PR00943 Copper-transporting ATPase signature 471 486 2.3E-15 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 Gene3D G3DSA:2.70.150.20 279 391 2.4E-43 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 Pfam PF00702 haloacid dehalogenase-like hydrolase 484 701 1.9E-43 T 12-10-2018 ALFP_1915 39969a0f15f9003c53fd8da8d51c4bcd 802 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 258 765 7.7E-95 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 ALFP_1982 c0a6524c341300f7c453e6cb2369c4c5 463 Gene3D G3DSA:3.40.1190.10 2 291 8.9E-92 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 ALFP_1982 c0a6524c341300f7c453e6cb2369c4c5 463 SUPERFAMILY SSF53244 291 455 1.58E-28 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 ALFP_1982 c0a6524c341300f7c453e6cb2369c4c5 463 Pfam PF02875 Mur ligase family, glutamate ligase domain 291 359 2.7E-6 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 ALFP_1982 c0a6524c341300f7c453e6cb2369c4c5 463 TIGRFAM TIGR01499 folC: bifunctional protein FolC 31 455 4.4E-101 T 12-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 ALFP_1982 c0a6524c341300f7c453e6cb2369c4c5 463 Pfam PF08245 Mur ligase middle domain 52 266 6.4E-13 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 ALFP_1982 c0a6524c341300f7c453e6cb2369c4c5 463 PIRSF PIRSF001563 387 463 0.088 T 12-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 ALFP_1982 c0a6524c341300f7c453e6cb2369c4c5 463 PIRSF PIRSF001563 5 400 2.9E-101 T 12-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 ALFP_1982 c0a6524c341300f7c453e6cb2369c4c5 463 SUPERFAMILY SSF53623 11 289 2.63E-87 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 ALFP_1019 dbc26edafc2426761d7638c63a5504c3 185 SUPERFAMILY SSF50249 65 126 1.5E-15 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_1019 dbc26edafc2426761d7638c63a5504c3 185 Gene3D G3DSA:2.30.30.30 1 62 6.9E-19 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 ALFP_1019 dbc26edafc2426761d7638c63a5504c3 185 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 2.4E-18 T 12-10-2018 IPR013185 Translation elongation factor, KOW-like ALFP_1019 dbc26edafc2426761d7638c63a5504c3 185 Gene3D G3DSA:2.40.50.140 64 126 4.7E-22 T 12-10-2018 ALFP_1019 dbc26edafc2426761d7638c63a5504c3 185 Pfam PF09285 Elongation factor P, C-terminal 128 183 2.0E-25 T 12-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 ALFP_1019 dbc26edafc2426761d7638c63a5504c3 185 SUPERFAMILY SSF50249 128 184 1.37E-17 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_1019 dbc26edafc2426761d7638c63a5504c3 185 SMART SM00841 128 183 2.9E-29 T 12-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 ALFP_1019 dbc26edafc2426761d7638c63a5504c3 185 TIGRFAM TIGR00038 efp: translation elongation factor P 3 184 1.4E-65 T 12-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 ALFP_1019 dbc26edafc2426761d7638c63a5504c3 185 SUPERFAMILY SSF50104 1 63 4.06E-16 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily ALFP_1019 dbc26edafc2426761d7638c63a5504c3 185 Gene3D G3DSA:2.40.50.140 127 185 6.0E-29 T 12-10-2018 ALFP_1019 dbc26edafc2426761d7638c63a5504c3 185 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 120 5.8E-18 T 12-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 ALFP_1019 dbc26edafc2426761d7638c63a5504c3 185 ProSitePatterns PS01275 Elongation factor P signature. 149 168 - T 12-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site ALFP_1019 dbc26edafc2426761d7638c63a5504c3 185 SMART SM01185 67 120 6.7E-21 T 12-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 ALFP_1019 dbc26edafc2426761d7638c63a5504c3 185 Hamap MF_00141 Elongation factor P [efp]. 1 184 47.541 T 12-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 ALFP_1019 dbc26edafc2426761d7638c63a5504c3 185 PIRSF PIRSF005901 1 185 7.5E-57 T 12-10-2018 IPR020599 Translation elongation factor P/YeiP ALFP_0390 faeaa12274f5ea557cd1a91311f35386 219 Pfam PF01810 LysE type translocator 20 211 4.0E-33 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 ALFP_0390 faeaa12274f5ea557cd1a91311f35386 219 PIRSF PIRSF006324 5 213 1.1E-44 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 ALFP_0303 9aa1d38980fd0a6edd7be4daa0d7256e 338 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 10 195 8.0E-40 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 ALFP_0303 9aa1d38980fd0a6edd7be4daa0d7256e 338 Gene3D G3DSA:1.10.1040.10 203 322 3.6E-30 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ALFP_0303 9aa1d38980fd0a6edd7be4daa0d7256e 338 Gene3D G3DSA:3.40.50.720 1 202 1.1E-45 T 12-10-2018 ALFP_0303 9aa1d38980fd0a6edd7be4daa0d7256e 338 SUPERFAMILY SSF48179 199 312 2.3E-26 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_0303 9aa1d38980fd0a6edd7be4daa0d7256e 338 SUPERFAMILY SSF51735 6 196 1.82E-35 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0303 9aa1d38980fd0a6edd7be4daa0d7256e 338 PIRSF PIRSF000105 2 325 2.9E-71 T 12-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 ALFP_0303 9aa1d38980fd0a6edd7be4daa0d7256e 338 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 200 299 9.5E-22 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 ALFP_2388 5e2836ff4a8537977e88627bda491019 208 Gene3D G3DSA:3.40.50.360 1 204 2.4E-56 T 12-10-2018 IPR029039 Flavoprotein-like superfamily ALFP_2388 5e2836ff4a8537977e88627bda491019 208 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 1 203 29.804 T 12-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 ALFP_2388 5e2836ff4a8537977e88627bda491019 208 SUPERFAMILY SSF52218 1 204 1.71E-51 T 12-10-2018 IPR029039 Flavoprotein-like superfamily ALFP_2388 5e2836ff4a8537977e88627bda491019 208 Pfam PF02525 Flavodoxin-like fold 1 199 2.7E-46 T 12-10-2018 IPR003680 Flavodoxin-like fold ALFP_1818 3b2a350141b4f283071968e8769da55f 365 SUPERFAMILY SSF51905 1 353 1.21E-34 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1818 3b2a350141b4f283071968e8769da55f 365 Pfam PF01266 FAD dependent oxidoreductase 2 336 1.8E-40 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 ALFP_1818 3b2a350141b4f283071968e8769da55f 365 Gene3D G3DSA:3.50.50.60 2 337 2.2E-106 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1818 3b2a350141b4f283071968e8769da55f 365 Gene3D G3DSA:3.30.9.10 72 298 2.2E-106 T 12-10-2018 ALFP_3441 31e7d1f293d11eddde7d3f4b1c1971a4 383 Pfam PF13180 PDZ domain 287 375 3.6E-17 T 12-10-2018 IPR001478 PDZ domain GO:0005515 ALFP_3441 31e7d1f293d11eddde7d3f4b1c1971a4 383 SUPERFAMILY SSF50156 242 367 4.73E-23 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 ALFP_3441 31e7d1f293d11eddde7d3f4b1c1971a4 383 Pfam PF13365 Trypsin-like peptidase domain 111 245 2.4E-31 T 12-10-2018 ALFP_3441 31e7d1f293d11eddde7d3f4b1c1971a4 383 Gene3D G3DSA:2.30.42.10 279 381 2.6E-25 T 12-10-2018 ALFP_3441 31e7d1f293d11eddde7d3f4b1c1971a4 383 SUPERFAMILY SSF50494 59 280 1.05E-60 T 12-10-2018 IPR009003 Peptidase S1, PA clan ALFP_3441 31e7d1f293d11eddde7d3f4b1c1971a4 383 Gene3D G3DSA:2.40.10.120 57 277 2.5E-73 T 12-10-2018 ALFP_3441 31e7d1f293d11eddde7d3f4b1c1971a4 383 PRINTS PR00834 HtrA/DegQ protease family signature 141 161 1.7E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ALFP_3441 31e7d1f293d11eddde7d3f4b1c1971a4 383 PRINTS PR00834 HtrA/DegQ protease family signature 181 205 1.7E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ALFP_3441 31e7d1f293d11eddde7d3f4b1c1971a4 383 PRINTS PR00834 HtrA/DegQ protease family signature 216 233 1.7E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ALFP_3441 31e7d1f293d11eddde7d3f4b1c1971a4 383 PRINTS PR00834 HtrA/DegQ protease family signature 324 336 1.7E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ALFP_3441 31e7d1f293d11eddde7d3f4b1c1971a4 383 PRINTS PR00834 HtrA/DegQ protease family signature 238 255 1.7E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ALFP_3441 31e7d1f293d11eddde7d3f4b1c1971a4 383 PRINTS PR00834 HtrA/DegQ protease family signature 120 132 1.7E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ALFP_3441 31e7d1f293d11eddde7d3f4b1c1971a4 383 SMART SM00228 284 366 4.1E-9 T 12-10-2018 IPR001478 PDZ domain GO:0005515 ALFP_0074 64e89a6787b9b95c770a34ea7f88f033 262 SUPERFAMILY SSF102198 18 260 1.24E-54 T 12-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 ALFP_0074 64e89a6787b9b95c770a34ea7f88f033 262 Gene3D G3DSA:3.50.30.50 1 262 3.7E-93 T 12-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 ALFP_0074 64e89a6787b9b95c770a34ea7f88f033 262 Pfam PF04199 Putative cyclase 22 199 1.3E-34 T 12-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 ALFP_0127 2b22ba4504c87bd240cfbc4481eb462b 589 Gene3D G3DSA:3.40.50.1220 204 374 4.5E-55 T 12-10-2018 ALFP_0127 2b22ba4504c87bd240cfbc4481eb462b 589 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 409 557 7.5E-51 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 ALFP_0127 2b22ba4504c87bd240cfbc4481eb462b 589 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 15 179 1.4E-57 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 ALFP_0127 2b22ba4504c87bd240cfbc4481eb462b 589 SUPERFAMILY SSF52518 12 185 5.89E-61 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_0127 2b22ba4504c87bd240cfbc4481eb462b 589 Gene3D G3DSA:3.40.50.970 6 193 1.7E-68 T 12-10-2018 ALFP_0127 2b22ba4504c87bd240cfbc4481eb462b 589 SUPERFAMILY SSF52467 207 376 7.64E-57 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily ALFP_0127 2b22ba4504c87bd240cfbc4481eb462b 589 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 210 347 4.4E-41 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 ALFP_0127 2b22ba4504c87bd240cfbc4481eb462b 589 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 15 580 9.0E-213 T 12-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 ALFP_0127 2b22ba4504c87bd240cfbc4481eb462b 589 SUPERFAMILY SSF52518 387 579 3.69E-66 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_0127 2b22ba4504c87bd240cfbc4481eb462b 589 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 446 465 - T 12-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 ALFP_0127 2b22ba4504c87bd240cfbc4481eb462b 589 Gene3D G3DSA:3.40.50.970 378 586 1.1E-70 T 12-10-2018 ALFP_1970 9dc0d436025603a795c9f0d6745543ba 173 SUPERFAMILY SSF55194 1 172 2.75E-67 T 12-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 ALFP_1970 9dc0d436025603a795c9f0d6745543ba 173 Gene3D G3DSA:1.10.132.20 1 170 1.8E-65 T 12-10-2018 ALFP_1970 9dc0d436025603a795c9f0d6745543ba 173 TIGRFAM TIGR00496 frr: ribosome recycling factor 1 173 7.1E-68 T 12-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 ALFP_1970 9dc0d436025603a795c9f0d6745543ba 173 Hamap MF_00040 Ribosome-recycling factor [frr]. 1 173 24.337 T 12-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 ALFP_1970 9dc0d436025603a795c9f0d6745543ba 173 Pfam PF01765 Ribosome recycling factor 8 171 1.8E-62 T 12-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 ALFP_1970 9dc0d436025603a795c9f0d6745543ba 173 Gene3D G3DSA:3.30.1360.40 19 93 1.8E-65 T 12-10-2018 ALFP_2322 18a38b7079030da11a4bdd8afd1780bb 363 PIRSF PIRSF001500 2 363 9.0E-134 T 12-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 ALFP_2322 18a38b7079030da11a4bdd8afd1780bb 363 TIGRFAM TIGR01807 CM_P2: chorismate mutase 9 84 2.5E-21 T 12-10-2018 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 ALFP_2322 18a38b7079030da11a4bdd8afd1780bb 363 Gene3D G3DSA:3.40.190.10 176 259 5.4E-56 T 12-10-2018 ALFP_2322 18a38b7079030da11a4bdd8afd1780bb 363 Gene3D G3DSA:3.40.190.10 96 266 5.4E-56 T 12-10-2018 ALFP_2322 18a38b7079030da11a4bdd8afd1780bb 363 Pfam PF01842 ACT domain 282 345 2.0E-6 T 12-10-2018 IPR002912 ACT domain ALFP_2322 18a38b7079030da11a4bdd8afd1780bb 363 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 308 315 - T 12-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 ALFP_2322 18a38b7079030da11a4bdd8afd1780bb 363 SUPERFAMILY SSF53850 95 278 4.45E-56 T 12-10-2018 ALFP_2322 18a38b7079030da11a4bdd8afd1780bb 363 SUPERFAMILY SSF48600 8 88 1.83E-17 T 12-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 ALFP_2322 18a38b7079030da11a4bdd8afd1780bb 363 Pfam PF01817 Chorismate mutase type II 13 91 2.6E-20 T 12-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 ALFP_2322 18a38b7079030da11a4bdd8afd1780bb 363 Gene3D G3DSA:3.30.70.260 275 362 5.0E-28 T 12-10-2018 ALFP_2322 18a38b7079030da11a4bdd8afd1780bb 363 Gene3D G3DSA:1.20.59.10 5 93 2.9E-24 T 12-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 ALFP_2322 18a38b7079030da11a4bdd8afd1780bb 363 Pfam PF00800 Prephenate dehydratase 96 270 4.5E-60 T 12-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 ALFP_2322 18a38b7079030da11a4bdd8afd1780bb 363 SUPERFAMILY SSF55021 265 360 1.72E-26 T 12-10-2018 ALFP_2322 18a38b7079030da11a4bdd8afd1780bb 363 SMART SM00830 13 94 1.4E-22 T 12-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 ALFP_0281 41a099a1cc7d79ad283ff0c8889ad9dc 538 SUPERFAMILY SSF46894 147 231 1.25E-12 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ALFP_0281 41a099a1cc7d79ad283ff0c8889ad9dc 538 Gene3D G3DSA:1.10.10.10 125 230 2.4E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0281 41a099a1cc7d79ad283ff0c8889ad9dc 538 SMART SM00862 157 230 1.4E-11 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_0281 41a099a1cc7d79ad283ff0c8889ad9dc 538 SUPERFAMILY SSF141868 280 516 4.32E-24 T 12-10-2018 IPR035919 EAL domain superfamily ALFP_0281 41a099a1cc7d79ad283ff0c8889ad9dc 538 Pfam PF00486 Transcriptional regulatory protein, C terminal 160 230 1.2E-9 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_0281 41a099a1cc7d79ad283ff0c8889ad9dc 538 Pfam PF00563 EAL domain 280 504 8.0E-24 T 12-10-2018 IPR001633 EAL domain ALFP_0281 41a099a1cc7d79ad283ff0c8889ad9dc 538 Gene3D G3DSA:3.20.20.450 274 518 3.2E-27 T 12-10-2018 IPR035919 EAL domain superfamily ALFP_0281 41a099a1cc7d79ad283ff0c8889ad9dc 538 SMART SM00052 257 511 4.8E-5 T 12-10-2018 IPR001633 EAL domain ALFP_3540 c0f50d2c2ed53288008dc02e474411fa 201 Pfam PF05962 HutD 17 186 1.4E-51 T 12-10-2018 IPR010282 Uncharacterised protein family HutD/Ves ALFP_3540 c0f50d2c2ed53288008dc02e474411fa 201 SUPERFAMILY SSF51182 11 187 1.96E-48 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_3540 c0f50d2c2ed53288008dc02e474411fa 201 Gene3D G3DSA:2.60.120.10 122 172 3.6E-44 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_3540 c0f50d2c2ed53288008dc02e474411fa 201 Gene3D G3DSA:2.60.120.10 19 121 3.6E-44 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_2275 d3cf7defa44f01587c0d2fe6b8f506e1 495 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 14 469 2.4E-228 T 12-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 ALFP_2275 d3cf7defa44f01587c0d2fe6b8f506e1 495 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 18 447 1.3E-115 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2275 d3cf7defa44f01587c0d2fe6b8f506e1 495 SUPERFAMILY SSF81442 15 472 3.4E-126 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2275 d3cf7defa44f01587c0d2fe6b8f506e1 495 Gene3D G3DSA:1.20.210.10 7 472 5.6E-204 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2275 d3cf7defa44f01587c0d2fe6b8f506e1 495 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 208 263 - T 12-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2634 fa2d152e04a137efc4dc1397d8b90bc1 322 SUPERFAMILY SSF48452 85 211 5.22E-18 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2634 fa2d152e04a137efc4dc1397d8b90bc1 322 Pfam PF14559 Tetratricopeptide repeat 132 191 1.6E-10 T 12-10-2018 ALFP_2634 fa2d152e04a137efc4dc1397d8b90bc1 322 Gene3D G3DSA:1.25.40.10 60 217 6.3E-22 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2634 fa2d152e04a137efc4dc1397d8b90bc1 322 SMART SM00028 153 186 0.15 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_2634 fa2d152e04a137efc4dc1397d8b90bc1 322 SMART SM00028 119 152 0.062 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_1193 0c3883070da102781f98483ccf7933cf 703 Gene3D G3DSA:1.10.490.80 606 699 3.3E-6 T 12-10-2018 ALFP_1193 0c3883070da102781f98483ccf7933cf 703 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 144 167 - T 12-10-2018 IPR025505 FHIPEP conserved site ALFP_1193 0c3883070da102781f98483ccf7933cf 703 Gene3D G3DSA:3.40.30.60 362 505 1.1E-52 T 12-10-2018 ALFP_1193 0c3883070da102781f98483ccf7933cf 703 PIRSF PIRSF005419 9 703 2.6E-244 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 ALFP_1193 0c3883070da102781f98483ccf7933cf 703 Pfam PF00771 FHIPEP family 28 690 8.8E-268 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 ALFP_1193 0c3883070da102781f98483ccf7933cf 703 Gene3D G3DSA:1.10.8.540 506 603 1.6E-20 T 12-10-2018 ALFP_1193 0c3883070da102781f98483ccf7933cf 703 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 35 48 1.4E-56 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 ALFP_1193 0c3883070da102781f98483ccf7933cf 703 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 139 155 1.4E-56 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 ALFP_1193 0c3883070da102781f98483ccf7933cf 703 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 188 205 1.4E-56 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 ALFP_1193 0c3883070da102781f98483ccf7933cf 703 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 72 91 1.4E-56 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 ALFP_1193 0c3883070da102781f98483ccf7933cf 703 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 158 176 1.4E-56 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 ALFP_1193 0c3883070da102781f98483ccf7933cf 703 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 239 253 1.4E-56 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 ALFP_1193 0c3883070da102781f98483ccf7933cf 703 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 20 698 1.3E-268 T 12-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 ALFP_3272 fc2000e256e9643ef19802c4ddfc7a73 253 Pfam PF01177 Asp/Glu/Hydantoin racemase 6 226 3.4E-8 T 12-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 ALFP_3272 fc2000e256e9643ef19802c4ddfc7a73 253 Hamap MF_00943 Maleate isomerase [maiA]. 4 250 50.945 T 12-10-2018 IPR028615 Maleate isomerase GO:0050076 KEGG: 00650+5.2.1.1|KEGG: 00760+5.2.1.1|MetaCyc: PWY-5033|MetaCyc: PWY-6993|MetaCyc: PWY-7128|MetaCyc: PWY-722 ALFP_3272 fc2000e256e9643ef19802c4ddfc7a73 253 PIRSF PIRSF015736 1 251 1.1E-61 T 12-10-2018 IPR026286 Maleate isomerase/Arylmalonate decarboxylase ALFP_3272 fc2000e256e9643ef19802c4ddfc7a73 253 Gene3D G3DSA:3.40.50.12500 3 252 1.8E-80 T 12-10-2018 ALFP_1631 0f18cddc3351f9a06e5aedda644dab4c 761 Gene3D G3DSA:3.40.50.300 551 758 4.2E-44 T 12-10-2018 ALFP_1631 0f18cddc3351f9a06e5aedda644dab4c 761 Gene3D G3DSA:1.10.275.30 384 498 2.8E-44 T 12-10-2018 ALFP_1631 0f18cddc3351f9a06e5aedda644dab4c 761 Gene3D G3DSA:3.40.50.300 185 535 2.8E-44 T 12-10-2018 ALFP_1631 0f18cddc3351f9a06e5aedda644dab4c 761 Pfam PF13307 Helicase C-terminal domain 583 746 4.6E-32 T 12-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 ALFP_1631 0f18cddc3351f9a06e5aedda644dab4c 761 SMART SM00488 175 412 4.0E-5 T 12-10-2018 IPR006554 Helicase-like, DEXD box c2 type GO:0004003|GO:0016818 ALFP_1631 0f18cddc3351f9a06e5aedda644dab4c 761 Pfam PF06733 DEAD_2 272 392 2.6E-17 T 12-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 ALFP_1631 0f18cddc3351f9a06e5aedda644dab4c 761 SUPERFAMILY SSF52540 201 728 2.6E-14 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1631 0f18cddc3351f9a06e5aedda644dab4c 761 SMART SM00491 597 734 3.3E-11 T 12-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 ALFP_0954 63d03ec3594aa5220c6e7594a0a16f5b 308 Pfam PF03466 LysR substrate binding domain 93 298 6.4E-34 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0954 63d03ec3594aa5220c6e7594a0a16f5b 308 Gene3D G3DSA:1.10.10.10 6 94 1.7E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0954 63d03ec3594aa5220c6e7594a0a16f5b 308 SUPERFAMILY SSF46785 6 116 7.26E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0954 63d03ec3594aa5220c6e7594a0a16f5b 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 6.2E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0954 63d03ec3594aa5220c6e7594a0a16f5b 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 4.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0954 63d03ec3594aa5220c6e7594a0a16f5b 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 4.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0954 63d03ec3594aa5220c6e7594a0a16f5b 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 4.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0954 63d03ec3594aa5220c6e7594a0a16f5b 308 Gene3D G3DSA:3.40.190.290 96 302 9.8E-32 T 12-10-2018 ALFP_0954 63d03ec3594aa5220c6e7594a0a16f5b 308 SUPERFAMILY SSF53850 95 299 9.96E-35 T 12-10-2018 ALFP_1721 08330c0290b6b3b4fda6a53f8295c1f7 150 TIGRFAM TIGR01994 SUF_scaf_2: SUF system FeS assembly protein, NifU family 8 140 4.2E-44 T 12-10-2018 ALFP_1721 08330c0290b6b3b4fda6a53f8295c1f7 150 SUPERFAMILY SSF82649 7 144 6.8E-47 T 12-10-2018 ALFP_1721 08330c0290b6b3b4fda6a53f8295c1f7 150 Pfam PF01592 NifU-like N terminal domain 12 128 2.9E-18 T 12-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 ALFP_1721 08330c0290b6b3b4fda6a53f8295c1f7 150 Gene3D G3DSA:3.90.1010.10 4 147 3.2E-49 T 12-10-2018 ALFP_1374 ba6bc9e536cad390fdc745141aab4d1d 218 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 179 204 1.1E-4 T 12-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor ALFP_1374 ba6bc9e536cad390fdc745141aab4d1d 218 SUPERFAMILY SSF53098 4 200 6.42E-27 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily ALFP_1374 ba6bc9e536cad390fdc745141aab4d1d 218 SMART SM00479 2 161 6.7E-5 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III ALFP_1374 ba6bc9e536cad390fdc745141aab4d1d 218 Pfam PF00929 Exonuclease 5 151 1.2E-4 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III ALFP_1374 ba6bc9e536cad390fdc745141aab4d1d 218 Gene3D G3DSA:3.30.420.10 4 176 4.4E-25 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 ALFP_0920 2782985dee86b383a745507d79f9fb80 629 Gene3D G3DSA:3.30.1120.80 545 621 1.4E-126 T 12-10-2018 ALFP_0920 2782985dee86b383a745507d79f9fb80 629 Pfam PF00884 Sulfatase 269 536 1.5E-42 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 ALFP_0920 2782985dee86b383a745507d79f9fb80 629 PIRSF PIRSF005091 36 599 4.1E-85 T 12-10-2018 IPR012160 Lipoteichoic acid synthase-like ALFP_0920 2782985dee86b383a745507d79f9fb80 629 Gene3D G3DSA:3.40.720.10 260 543 1.4E-126 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 ALFP_0920 2782985dee86b383a745507d79f9fb80 629 SUPERFAMILY SSF53649 267 591 1.57E-65 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 ALFP_1507 8b9e4831e2c239cd4d96cdeda20e119e 486 SMART SM00116 95 142 2.5E-12 T 12-10-2018 IPR000644 CBS domain ALFP_1507 8b9e4831e2c239cd4d96cdeda20e119e 486 SMART SM00116 156 204 3.1E-6 T 12-10-2018 IPR000644 CBS domain ALFP_1507 8b9e4831e2c239cd4d96cdeda20e119e 486 SUPERFAMILY SSF51412 2 476 1.27E-127 T 12-10-2018 ALFP_1507 8b9e4831e2c239cd4d96cdeda20e119e 486 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 7 453 1.0E-192 T 12-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 ALFP_1507 8b9e4831e2c239cd4d96cdeda20e119e 486 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 293 305 - T 12-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 ALFP_1507 8b9e4831e2c239cd4d96cdeda20e119e 486 Pfam PF00571 CBS domain 95 138 3.1E-11 T 12-10-2018 IPR000644 CBS domain ALFP_1507 8b9e4831e2c239cd4d96cdeda20e119e 486 Pfam PF00571 CBS domain 148 201 5.8E-5 T 12-10-2018 IPR000644 CBS domain ALFP_1507 8b9e4831e2c239cd4d96cdeda20e119e 486 Gene3D G3DSA:3.20.20.70 1 485 1.4E-218 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_1507 8b9e4831e2c239cd4d96cdeda20e119e 486 SUPERFAMILY SSF54631 94 201 1.77E-28 T 12-10-2018 ALFP_1507 8b9e4831e2c239cd4d96cdeda20e119e 486 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 7 485 87.302 T 12-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 ALFP_1507 8b9e4831e2c239cd4d96cdeda20e119e 486 PIRSF PIRSF000130 1 486 2.0E-206 T 12-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 ALFP_1507 8b9e4831e2c239cd4d96cdeda20e119e 486 SMART SM01240 6 472 0.0 T 12-10-2018 ALFP_1507 8b9e4831e2c239cd4d96cdeda20e119e 486 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 7 472 4.8E-165 T 12-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 ALFP_0356 67fc91fa505ae009d10b300ef99138df 358 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 11 350 4.7E-129 T 12-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 ALFP_0356 67fc91fa505ae009d10b300ef99138df 358 SUPERFAMILY SSF51726 5 355 2.44E-115 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 ALFP_0356 67fc91fa505ae009d10b300ef99138df 358 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 143 159 - T 12-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 ALFP_0356 67fc91fa505ae009d10b300ef99138df 358 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 24 33 - T 12-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 ALFP_0356 67fc91fa505ae009d10b300ef99138df 358 Gene3D G3DSA:3.20.20.210 2 358 2.0E-150 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 ALFP_0356 67fc91fa505ae009d10b300ef99138df 358 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 8 352 48.528 T 12-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 ALFP_0356 67fc91fa505ae009d10b300ef99138df 358 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 7 351 8.3E-133 T 12-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 ALFP_3231 5cb5a6a7f4726e6a9ffc9e1daab9a7ec 329 Pfam PF01380 SIS domain 47 177 1.5E-32 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 ALFP_3231 5cb5a6a7f4726e6a9ffc9e1daab9a7ec 329 SMART SM00116 215 263 0.17 T 12-10-2018 IPR000644 CBS domain ALFP_3231 5cb5a6a7f4726e6a9ffc9e1daab9a7ec 329 SMART SM00116 280 328 23.0 T 12-10-2018 IPR000644 CBS domain ALFP_3231 5cb5a6a7f4726e6a9ffc9e1daab9a7ec 329 Pfam PF00571 CBS domain 206 263 2.4E-6 T 12-10-2018 IPR000644 CBS domain ALFP_3231 5cb5a6a7f4726e6a9ffc9e1daab9a7ec 329 Pfam PF00571 CBS domain 277 326 0.0011 T 12-10-2018 IPR000644 CBS domain ALFP_3231 5cb5a6a7f4726e6a9ffc9e1daab9a7ec 329 Gene3D G3DSA:3.10.580.10 202 326 3.3E-39 T 12-10-2018 ALFP_3231 5cb5a6a7f4726e6a9ffc9e1daab9a7ec 329 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 50 319 8.7E-104 T 12-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 ALFP_3231 5cb5a6a7f4726e6a9ffc9e1daab9a7ec 329 Gene3D G3DSA:3.40.50.10490 8 201 2.0E-65 T 12-10-2018 ALFP_3231 5cb5a6a7f4726e6a9ffc9e1daab9a7ec 329 PIRSF PIRSF004692 2 329 1.5E-126 T 12-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 ALFP_3231 5cb5a6a7f4726e6a9ffc9e1daab9a7ec 329 SUPERFAMILY SSF53697 13 327 2.11E-66 T 12-10-2018 ALFP_3011 5326e704d37456bd5b209c1c0aa5e816 353 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 1 330 6.3E-90 T 12-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 ALFP_3011 5326e704d37456bd5b209c1c0aa5e816 353 SUPERFAMILY SSF51395 1 351 1.34E-116 T 12-10-2018 ALFP_3011 5326e704d37456bd5b209c1c0aa5e816 353 Gene3D G3DSA:3.20.20.70 1 353 5.3E-133 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_3424 29d338dd5344f3cb640f47326dd28d76 223 Gene3D G3DSA:3.10.450.50 58 193 1.8E-54 T 12-10-2018 ALFP_3424 29d338dd5344f3cb640f47326dd28d76 223 PIRSF PIRSF004649 19 223 3.1E-50 T 12-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC ALFP_3424 29d338dd5344f3cb640f47326dd28d76 223 Pfam PF05494 MlaC protein 56 220 1.1E-54 T 12-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC ALFP_3424 29d338dd5344f3cb640f47326dd28d76 223 Gene3D G3DSA:1.10.10.640 93 218 1.8E-54 T 12-10-2018 ALFP_1929 1fc1011da896ae74c97e71d25435320e 253 SUPERFAMILY SSF51735 9 252 4.35E-78 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1929 1fc1011da896ae74c97e71d25435320e 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_1929 1fc1011da896ae74c97e71d25435320e 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 184 0.0039 T 12-10-2018 ALFP_1929 1fc1011da896ae74c97e71d25435320e 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.5E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1929 1fc1011da896ae74c97e71d25435320e 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 2.5E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1929 1fc1011da896ae74c97e71d25435320e 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 2.5E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1929 1fc1011da896ae74c97e71d25435320e 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 2.5E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1929 1fc1011da896ae74c97e71d25435320e 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 2.5E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1929 1fc1011da896ae74c97e71d25435320e 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 2.5E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1929 1fc1011da896ae74c97e71d25435320e 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 8.0E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1929 1fc1011da896ae74c97e71d25435320e 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 8.0E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1929 1fc1011da896ae74c97e71d25435320e 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 8.0E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1929 1fc1011da896ae74c97e71d25435320e 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 252 2.9E-61 T 12-10-2018 ALFP_1929 1fc1011da896ae74c97e71d25435320e 253 Gene3D G3DSA:3.40.50.720 5 253 5.9E-82 T 12-10-2018 ALFP_3145 a0f5c5afebc11a90733696e7e5f117ac 395 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 87 151 4.0E-17 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 ALFP_3145 a0f5c5afebc11a90733696e7e5f117ac 395 SUPERFAMILY SSF161098 189 376 9.68E-28 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3145 a0f5c5afebc11a90733696e7e5f117ac 395 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 390 3.4E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_3145 a0f5c5afebc11a90733696e7e5f117ac 395 Gene3D G3DSA:1.10.3720.10 185 391 8.4E-35 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3145 a0f5c5afebc11a90733696e7e5f117ac 395 Gene3D G3DSA:1.10.3720.10 75 181 1.5E-14 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3145 a0f5c5afebc11a90733696e7e5f117ac 395 SUPERFAMILY SSF161098 88 155 1.57E-13 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1473 36e2362e9a75302f0a9ee5959d1bb762 433 SMART SM01086 316 411 2.1E-31 T 12-10-2018 IPR019489 Clp ATPase, C-terminal ALFP_1473 36e2362e9a75302f0a9ee5959d1bb762 433 Pfam PF06689 ClpX C4-type zinc finger 12 49 8.9E-19 T 12-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 ALFP_1473 36e2362e9a75302f0a9ee5959d1bb762 433 Pfam PF07724 AAA domain (Cdc48 subfamily) 113 309 9.4E-47 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 ALFP_1473 36e2362e9a75302f0a9ee5959d1bb762 433 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 414 52.593 T 12-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 ALFP_1473 36e2362e9a75302f0a9ee5959d1bb762 433 Gene3D G3DSA:1.10.8.60 315 423 4.5E-38 T 12-10-2018 ALFP_1473 36e2362e9a75302f0a9ee5959d1bb762 433 Gene3D G3DSA:3.30.50.30 2 52 9.5E-22 T 12-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily ALFP_1473 36e2362e9a75302f0a9ee5959d1bb762 433 SMART SM00382 112 332 3.7E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1473 36e2362e9a75302f0a9ee5959d1bb762 433 SMART SM00994 11 51 3.8E-22 T 12-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 ALFP_1473 36e2362e9a75302f0a9ee5959d1bb762 433 SUPERFAMILY SSF52540 63 401 1.61E-71 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1473 36e2362e9a75302f0a9ee5959d1bb762 433 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 7 411 3.0E-200 T 12-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 ALFP_1473 36e2362e9a75302f0a9ee5959d1bb762 433 Gene3D G3DSA:3.40.50.300 58 314 1.4E-107 T 12-10-2018 ALFP_1473 36e2362e9a75302f0a9ee5959d1bb762 433 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 316 394 6.2E-17 T 12-10-2018 IPR019489 Clp ATPase, C-terminal ALFP_1473 36e2362e9a75302f0a9ee5959d1bb762 433 SUPERFAMILY SSF57716 12 48 7.84E-10 T 12-10-2018 ALFP_3500 55dfc5abf94466b1e65b010ec0162979 605 Gene3D G3DSA:3.10.450.50 7 127 8.1E-10 T 12-10-2018 ALFP_3500 55dfc5abf94466b1e65b010ec0162979 605 SUPERFAMILY SSF54427 16 121 1.69E-11 T 12-10-2018 IPR032710 NTF2-like domain superfamily ALFP_3500 55dfc5abf94466b1e65b010ec0162979 605 Pfam PF12680 SnoaL-like domain 19 119 1.8E-6 T 12-10-2018 IPR037401 SnoaL-like domain ALFP_3500 55dfc5abf94466b1e65b010ec0162979 605 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 174 369 3.7E-20 T 12-10-2018 ALFP_3500 55dfc5abf94466b1e65b010ec0162979 605 Gene3D G3DSA:3.50.50.60 457 597 1.7E-6 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_3500 55dfc5abf94466b1e65b010ec0162979 605 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 296 305 2.6E-7 T 12-10-2018 ALFP_3500 55dfc5abf94466b1e65b010ec0162979 605 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 194 2.6E-7 T 12-10-2018 ALFP_3500 55dfc5abf94466b1e65b010ec0162979 605 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 337 362 2.6E-7 T 12-10-2018 ALFP_3500 55dfc5abf94466b1e65b010ec0162979 605 SUPERFAMILY SSF51905 171 375 1.99E-36 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_3500 55dfc5abf94466b1e65b010ec0162979 605 SUPERFAMILY SSF51905 336 573 5.02E-10 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_3500 55dfc5abf94466b1e65b010ec0162979 605 Gene3D G3DSA:3.50.50.60 159 425 6.8E-63 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1609 1b892f4b2176e4920dad6f7a0abda6e6 387 Pfam PF03594 Benzoate membrane transport protein 8 380 2.7E-139 T 12-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 ALFP_1609 1b892f4b2176e4920dad6f7a0abda6e6 387 TIGRFAM TIGR00843 benE: benzoate transporter 7 382 8.3E-134 T 12-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 ALFP_3172 f9a746dc30b49360187a25326ba73adc 333 Pfam PF00293 NUDIX domain 8 110 4.5E-20 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 ALFP_3172 f9a746dc30b49360187a25326ba73adc 333 Pfam PF02581 Thiamine monophosphate synthase 135 325 2.1E-32 T 12-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 ALFP_3172 f9a746dc30b49360187a25326ba73adc 333 Gene3D G3DSA:3.90.79.10 4 129 2.4E-33 T 12-10-2018 ALFP_3172 f9a746dc30b49360187a25326ba73adc 333 SUPERFAMILY SSF55811 2 116 2.84E-34 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 ALFP_3172 f9a746dc30b49360187a25326ba73adc 333 ProSitePatterns PS00893 Nudix box signature. 40 61 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 ALFP_3172 f9a746dc30b49360187a25326ba73adc 333 PRINTS PR00502 NUDIX hydrolase family signature 35 49 3.0E-7 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 ALFP_3172 f9a746dc30b49360187a25326ba73adc 333 PRINTS PR00502 NUDIX hydrolase family signature 49 64 3.0E-7 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 ALFP_3172 f9a746dc30b49360187a25326ba73adc 333 Gene3D G3DSA:3.20.20.70 130 333 4.8E-40 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_3172 f9a746dc30b49360187a25326ba73adc 333 TIGRFAM TIGR00586 mutt: mutator mutT protein 5 109 6.7E-31 T 12-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 ALFP_3172 f9a746dc30b49360187a25326ba73adc 333 SUPERFAMILY SSF51391 119 330 1.57E-36 T 12-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 ALFP_1912 2ba05811bd9deb0f1d9a558313335ea3 220 SMART SM00248 122 151 0.17 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 ALFP_1912 2ba05811bd9deb0f1d9a558313335ea3 220 SMART SM00248 89 118 1800.0 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 ALFP_1912 2ba05811bd9deb0f1d9a558313335ea3 220 SMART SM00248 20 52 1300.0 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 ALFP_1912 2ba05811bd9deb0f1d9a558313335ea3 220 SMART SM00248 56 85 0.28 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 ALFP_1912 2ba05811bd9deb0f1d9a558313335ea3 220 SMART SM00248 155 189 0.0076 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 ALFP_1912 2ba05811bd9deb0f1d9a558313335ea3 220 Pfam PF12796 Ankyrin repeats (3 copies) 99 191 2.7E-13 T 12-10-2018 IPR020683 Ankyrin repeat-containing domain ALFP_1912 2ba05811bd9deb0f1d9a558313335ea3 220 SUPERFAMILY SSF48403 19 219 2.62E-45 T 12-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily ALFP_1912 2ba05811bd9deb0f1d9a558313335ea3 220 Gene3D G3DSA:1.25.40.20 20 219 4.9E-52 T 12-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily ALFP_1912 2ba05811bd9deb0f1d9a558313335ea3 220 PRINTS PR01415 Ankyrin repeat signature 123 138 1.1E-5 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 ALFP_1912 2ba05811bd9deb0f1d9a558313335ea3 220 PRINTS PR01415 Ankyrin repeat signature 176 190 1.1E-5 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 ALFP_2572 ccdd8c38b0adaafe16c5333f36984cdd 233 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 107 114 - T 12-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 ALFP_2572 ccdd8c38b0adaafe16c5333f36984cdd 233 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 4 233 39.702 T 12-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 ALFP_2572 ccdd8c38b0adaafe16c5333f36984cdd 233 SUPERFAMILY SSF53448 6 233 2.7E-50 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_2572 ccdd8c38b0adaafe16c5333f36984cdd 233 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 7 231 2.7E-61 T 12-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 ALFP_2572 ccdd8c38b0adaafe16c5333f36984cdd 233 Gene3D G3DSA:3.90.550.10 1 233 1.7E-63 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_2572 ccdd8c38b0adaafe16c5333f36984cdd 233 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 6 231 1.4E-60 T 12-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 ALFP_3091 dadeaf9a3e410755bcb0fd458aa57b44 324 Gene3D G3DSA:3.10.20.30 228 324 1.1E-25 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_3091 dadeaf9a3e410755bcb0fd458aa57b44 324 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 273 281 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ALFP_3091 dadeaf9a3e410755bcb0fd458aa57b44 324 SUPERFAMILY SSF54292 214 318 6.29E-28 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_3091 dadeaf9a3e410755bcb0fd458aa57b44 324 PRINTS PR00409 Phthalate dioxygenase reductase family signature 37 49 1.4E-33 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_3091 dadeaf9a3e410755bcb0fd458aa57b44 324 PRINTS PR00409 Phthalate dioxygenase reductase family signature 109 128 1.4E-33 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_3091 dadeaf9a3e410755bcb0fd458aa57b44 324 PRINTS PR00409 Phthalate dioxygenase reductase family signature 134 143 1.4E-33 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_3091 dadeaf9a3e410755bcb0fd458aa57b44 324 PRINTS PR00409 Phthalate dioxygenase reductase family signature 193 201 1.4E-33 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_3091 dadeaf9a3e410755bcb0fd458aa57b44 324 PRINTS PR00409 Phthalate dioxygenase reductase family signature 27 37 1.4E-33 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_3091 dadeaf9a3e410755bcb0fd458aa57b44 324 PRINTS PR00409 Phthalate dioxygenase reductase family signature 72 86 1.4E-33 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_3091 dadeaf9a3e410755bcb0fd458aa57b44 324 Gene3D G3DSA:3.40.50.80 98 223 3.4E-28 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_3091 dadeaf9a3e410755bcb0fd458aa57b44 324 Pfam PF00175 Oxidoreductase NAD-binding domain 110 207 2.2E-11 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ALFP_3091 dadeaf9a3e410755bcb0fd458aa57b44 324 SUPERFAMILY SSF52343 94 228 1.96E-30 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_3091 dadeaf9a3e410755bcb0fd458aa57b44 324 SUPERFAMILY SSF63380 3 96 1.5E-21 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_3091 dadeaf9a3e410755bcb0fd458aa57b44 324 Gene3D G3DSA:2.40.30.10 2 97 1.1E-23 T 12-10-2018 ALFP_3091 dadeaf9a3e410755bcb0fd458aa57b44 324 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 245 314 1.2E-9 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_0302 a6585276d334f50eed8603b0d876b49a 324 Gene3D G3DSA:3.40.190.10 26 308 5.7E-48 T 12-10-2018 ALFP_0302 a6585276d334f50eed8603b0d876b49a 324 Gene3D G3DSA:1.10.8.450 245 278 5.7E-48 T 12-10-2018 ALFP_0302 a6585276d334f50eed8603b0d876b49a 324 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 32 191 1.3E-14 T 12-10-2018 ALFP_0302 a6585276d334f50eed8603b0d876b49a 324 Gene3D G3DSA:3.40.190.10 108 212 5.7E-48 T 12-10-2018 ALFP_0302 a6585276d334f50eed8603b0d876b49a 324 SUPERFAMILY SSF53850 25 251 5.3E-33 T 12-10-2018 ALFP_1125 ca837661dfddfb2372de31d292b86402 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 267 9.1E-21 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_1125 ca837661dfddfb2372de31d292b86402 268 Gene3D G3DSA:1.10.3720.10 12 267 1.1E-48 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1125 ca837661dfddfb2372de31d292b86402 268 SUPERFAMILY SSF161098 5 265 5.61E-57 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0410 145dcc794441f612b5feae0c9df4b3a7 346 SUPERFAMILY SSF56349 28 328 1.59E-47 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 ALFP_0410 145dcc794441f612b5feae0c9df4b3a7 346 Pfam PF00589 Phage integrase family 133 320 8.6E-37 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 ALFP_0410 145dcc794441f612b5feae0c9df4b3a7 346 Gene3D G3DSA:1.10.443.10 131 328 2.4E-51 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 ALFP_0410 145dcc794441f612b5feae0c9df4b3a7 346 Gene3D G3DSA:1.10.150.130 28 119 1.3E-13 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal ALFP_0410 145dcc794441f612b5feae0c9df4b3a7 346 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 28 334 54.602 T 12-10-2018 IPR023009 Tyrosine recombinase XerC/XerD ALFP_0410 145dcc794441f612b5feae0c9df4b3a7 346 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 31 105 6.5E-15 T 12-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 ALFP_0253 35541f38dbb735b2f7031ce3da1b59a4 290 SUPERFAMILY SSF56752 8 282 2.75E-74 T 12-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 ALFP_0253 35541f38dbb735b2f7031ce3da1b59a4 290 Pfam PF01063 Amino-transferase class IV 37 256 2.8E-42 T 12-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 ALFP_0253 35541f38dbb735b2f7031ce3da1b59a4 290 Gene3D G3DSA:3.30.470.10 6 126 2.5E-37 T 12-10-2018 ALFP_0253 35541f38dbb735b2f7031ce3da1b59a4 290 Gene3D G3DSA:3.20.10.10 128 289 6.2E-54 T 12-10-2018 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 Gene3D G3DSA:1.10.287.470 182 269 2.2E-5 T 12-10-2018 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 Gene3D G3DSA:1.10.287.470 114 140 1.2E-9 T 12-10-2018 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 Gene3D G3DSA:1.10.287.470 275 298 7.9E-13 T 12-10-2018 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 432 452 6.4E-49 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 92 112 6.4E-49 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 50 73 6.4E-49 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 376 399 6.4E-49 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 352 376 6.4E-49 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 319 340 6.4E-49 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 417 432 6.4E-49 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 Gene3D G3DSA:2.40.50.100 299 337 7.9E-13 T 12-10-2018 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 ProSitePatterns PS00543 HlyD family secretion proteins signature. 417 439 - T 12-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 Gene3D G3DSA:2.40.30.170 68 78 1.2E-9 T 12-10-2018 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 Pfam PF13437 HlyD family secretion protein 307 420 1.0E-15 T 12-10-2018 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 Gene3D G3DSA:2.40.30.170 338 429 7.9E-13 T 12-10-2018 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 SUPERFAMILY SSF111369 72 144 3.01E-6 T 12-10-2018 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 42 453 7.0E-124 T 12-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 Pfam PF13533 Biotin-lipoyl like 80 116 3.7E-7 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain ALFP_3634 e40820e59907a5197dfd355ddda375d5 453 Gene3D G3DSA:2.40.50.100 79 113 1.2E-9 T 12-10-2018 ALFP_1133 65a9da87595c6a3979bcf76488db5db4 451 SUPERFAMILY SSF55729 307 431 1.51E-19 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_1133 65a9da87595c6a3979bcf76488db5db4 451 Gene3D G3DSA:3.40.630.30 304 451 8.9E-37 T 12-10-2018 ALFP_1133 65a9da87595c6a3979bcf76488db5db4 451 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 22 451 1.3E-169 T 12-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 ALFP_1133 65a9da87595c6a3979bcf76488db5db4 451 Pfam PF13508 Acetyltransferase (GNAT) domain 344 423 8.5E-7 T 12-10-2018 IPR000182 GNAT domain ALFP_1133 65a9da87595c6a3979bcf76488db5db4 451 PIRSF PIRSF000423 13 451 5.8E-173 T 12-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 ALFP_1133 65a9da87595c6a3979bcf76488db5db4 451 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 451 185.755 T 12-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 ALFP_1133 65a9da87595c6a3979bcf76488db5db4 451 Pfam PF00696 Amino acid kinase family 39 222 4.1E-19 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 ALFP_1133 65a9da87595c6a3979bcf76488db5db4 451 SUPERFAMILY SSF53633 19 302 5.86E-56 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily ALFP_1133 65a9da87595c6a3979bcf76488db5db4 451 Gene3D G3DSA:3.40.1160.10 20 303 6.0E-77 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily ALFP_0681 4331a487c14f5edc129256374f8924e9 656 SUPERFAMILY SSF55785 282 408 5.23E-21 T 12-10-2018 IPR035965 PAS domain superfamily ALFP_0681 4331a487c14f5edc129256374f8924e9 656 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 292 415 2.4E-22 T 12-10-2018 IPR000014 PAS domain ALFP_0681 4331a487c14f5edc129256374f8924e9 656 Pfam PF00512 His Kinase A (phospho-acceptor) domain 433 499 4.3E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_0681 4331a487c14f5edc129256374f8924e9 656 SMART SM00388 432 502 1.1E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_0681 4331a487c14f5edc129256374f8924e9 656 Gene3D G3DSA:3.30.450.20 281 436 1.4E-21 T 12-10-2018 ALFP_0681 4331a487c14f5edc129256374f8924e9 656 SMART SM00086 368 410 9.4E-5 T 12-10-2018 IPR001610 PAC motif ALFP_0681 4331a487c14f5edc129256374f8924e9 656 PRINTS PR00344 Bacterial sensor protein C-terminal signature 585 599 1.8E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_0681 4331a487c14f5edc129256374f8924e9 656 PRINTS PR00344 Bacterial sensor protein C-terminal signature 614 632 1.8E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_0681 4331a487c14f5edc129256374f8924e9 656 PRINTS PR00344 Bacterial sensor protein C-terminal signature 603 613 1.8E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_0681 4331a487c14f5edc129256374f8924e9 656 PRINTS PR00344 Bacterial sensor protein C-terminal signature 638 651 1.8E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_0681 4331a487c14f5edc129256374f8924e9 656 SUPERFAMILY SSF55874 494 652 8.64E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_0681 4331a487c14f5edc129256374f8924e9 656 Gene3D G3DSA:1.10.287.130 437 499 1.3E-19 T 12-10-2018 ALFP_0681 4331a487c14f5edc129256374f8924e9 656 Gene3D G3DSA:3.30.565.10 503 656 1.5E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_0681 4331a487c14f5edc129256374f8924e9 656 SUPERFAMILY SSF47384 429 501 2.75E-9 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_0681 4331a487c14f5edc129256374f8924e9 656 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 544 652 4.1E-17 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_0681 4331a487c14f5edc129256374f8924e9 656 SMART SM00091 294 362 2.4E-6 T 12-10-2018 IPR000014 PAS domain ALFP_0681 4331a487c14f5edc129256374f8924e9 656 Pfam PF00989 PAS fold 296 407 1.2E-13 T 12-10-2018 IPR013767 PAS fold GO:0006355 ALFP_0681 4331a487c14f5edc129256374f8924e9 656 SMART SM00387 544 654 2.2E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_3249 9838928e6163fe449e0912ace419959b 309 SUPERFAMILY SSF46689 255 302 1.34E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_3249 9838928e6163fe449e0912ace419959b 309 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 272 287 1.2E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_3249 9838928e6163fe449e0912ace419959b 309 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 287 303 1.2E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_3249 9838928e6163fe449e0912ace419959b 309 Pfam PF12833 Helix-turn-helix domain 226 302 1.1E-21 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_3249 9838928e6163fe449e0912ace419959b 309 Pfam PF14525 AraC-binding-like domain 21 192 1.9E-15 T 12-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like ALFP_3249 9838928e6163fe449e0912ace419959b 309 SMART SM00342 220 303 4.6E-28 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_3249 9838928e6163fe449e0912ace419959b 309 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 256 299 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ALFP_3249 9838928e6163fe449e0912ace419959b 309 Gene3D G3DSA:1.10.10.60 201 305 2.4E-26 T 12-10-2018 ALFP_2066 b8a7d4c825ec625062709a04bc6af8ba 214 SUPERFAMILY SSF52016 1 200 3.14E-59 T 12-10-2018 ALFP_2066 b8a7d4c825ec625062709a04bc6af8ba 214 Gene3D G3DSA:3.20.19.10 1 188 2.3E-75 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 ALFP_2066 b8a7d4c825ec625062709a04bc6af8ba 214 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 210 42.604 T 12-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 ALFP_2066 b8a7d4c825ec625062709a04bc6af8ba 214 Pfam PF00694 Aconitase C-terminal domain 1 131 1.0E-37 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 ALFP_2066 b8a7d4c825ec625062709a04bc6af8ba 214 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 196 4.5E-78 T 12-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 ALFP_2420 a3b3475c96f71a0f7eefe43eff94333d 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 44 59 3.4E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_2420 a3b3475c96f71a0f7eefe43eff94333d 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 89 102 3.4E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_2420 a3b3475c96f71a0f7eefe43eff94333d 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 116 3.4E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_2420 a3b3475c96f71a0f7eefe43eff94333d 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 204 218 3.4E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_2420 a3b3475c96f71a0f7eefe43eff94333d 267 SUPERFAMILY SSF53474 8 254 8.04E-42 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2420 a3b3475c96f71a0f7eefe43eff94333d 267 Gene3D G3DSA:3.40.50.1820 5 255 1.5E-43 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2420 a3b3475c96f71a0f7eefe43eff94333d 267 Pfam PF12697 Alpha/beta hydrolase family 22 247 1.2E-16 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_2766 ad41a1a7951fcc659b1f16b1453139a0 429 SMART SM00052 153 398 1.5E-23 T 12-10-2018 IPR001633 EAL domain ALFP_2766 ad41a1a7951fcc659b1f16b1453139a0 429 Gene3D G3DSA:3.20.20.450 151 393 9.9E-49 T 12-10-2018 IPR035919 EAL domain superfamily ALFP_2766 ad41a1a7951fcc659b1f16b1453139a0 429 SUPERFAMILY SSF141868 164 393 1.96E-47 T 12-10-2018 IPR035919 EAL domain superfamily ALFP_2766 ad41a1a7951fcc659b1f16b1453139a0 429 Pfam PF00563 EAL domain 163 391 1.6E-47 T 12-10-2018 IPR001633 EAL domain ALFP_0117 584385f0995dd30f6988a30b2444881f 221 Gene3D G3DSA:1.10.3720.10 4 221 3.0E-53 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0117 584385f0995dd30f6988a30b2444881f 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 210 9.5E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0117 584385f0995dd30f6988a30b2444881f 221 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 14 209 3.0E-55 T 12-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 ALFP_0117 584385f0995dd30f6988a30b2444881f 221 SUPERFAMILY SSF161098 11 217 1.96E-48 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1932 4ba66c0259d43cec6991f8fed94bff9d 170 PIRSF PIRSF031551 1 170 1.3E-53 T 12-10-2018 IPR012550 Protein of unknown function DUF1706 ALFP_1932 4ba66c0259d43cec6991f8fed94bff9d 170 Gene3D G3DSA:1.20.120.450 1 170 1.9E-59 T 12-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes ALFP_1932 4ba66c0259d43cec6991f8fed94bff9d 170 Pfam PF08020 Protein of unknown function (DUF1706) 1 165 1.5E-53 T 12-10-2018 IPR012550 Protein of unknown function DUF1706 ALFP_1117 a237d76a83355b3e191eee64168412fc 376 SUPERFAMILY SSF51419 9 251 1.13E-52 T 12-10-2018 IPR029066 PLP-binding barrel ALFP_1117 a237d76a83355b3e191eee64168412fc 376 Gene3D G3DSA:2.40.37.10 9 373 5.7E-102 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 ALFP_1117 a237d76a83355b3e191eee64168412fc 376 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 41 51 - T 12-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 ALFP_1117 a237d76a83355b3e191eee64168412fc 376 PRINTS PR00992 Alanine racemase signature 266 281 2.6E-58 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 ALFP_1117 a237d76a83355b3e191eee64168412fc 376 PRINTS PR00992 Alanine racemase signature 167 178 2.6E-58 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 ALFP_1117 a237d76a83355b3e191eee64168412fc 376 PRINTS PR00992 Alanine racemase signature 209 236 2.6E-58 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 ALFP_1117 a237d76a83355b3e191eee64168412fc 376 PRINTS PR00992 Alanine racemase signature 357 370 2.6E-58 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 ALFP_1117 a237d76a83355b3e191eee64168412fc 376 PRINTS PR00992 Alanine racemase signature 304 321 2.6E-58 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 ALFP_1117 a237d76a83355b3e191eee64168412fc 376 PRINTS PR00992 Alanine racemase signature 36 52 2.6E-58 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 ALFP_1117 a237d76a83355b3e191eee64168412fc 376 PRINTS PR00992 Alanine racemase signature 130 142 2.6E-58 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 ALFP_1117 a237d76a83355b3e191eee64168412fc 376 PRINTS PR00992 Alanine racemase signature 283 298 2.6E-58 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 ALFP_1117 a237d76a83355b3e191eee64168412fc 376 PRINTS PR00992 Alanine racemase signature 70 88 2.6E-58 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 ALFP_1117 a237d76a83355b3e191eee64168412fc 376 SMART SM01005 250 375 3.7E-61 T 12-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 ALFP_1117 a237d76a83355b3e191eee64168412fc 376 SUPERFAMILY SSF50621 244 375 1.46E-44 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 ALFP_1117 a237d76a83355b3e191eee64168412fc 376 Hamap MF_01201 Alanine racemase. 2 375 31.811 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 ALFP_1117 a237d76a83355b3e191eee64168412fc 376 Pfam PF00842 Alanine racemase, C-terminal domain 251 373 1.5E-41 T 12-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 ALFP_1117 a237d76a83355b3e191eee64168412fc 376 Pfam PF01168 Alanine racemase, N-terminal domain 9 236 2.0E-56 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 ALFP_1117 a237d76a83355b3e191eee64168412fc 376 Gene3D G3DSA:3.20.20.10 11 234 5.7E-102 T 12-10-2018 IPR029066 PLP-binding barrel ALFP_1117 a237d76a83355b3e191eee64168412fc 376 TIGRFAM TIGR00492 alr: alanine racemase 5 373 3.0E-94 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 ALFP_3446 5fe28aceadc4d93cdf29e5e285eceadd 284 Gene3D G3DSA:1.10.760.10 25 184 4.9E-15 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_3446 5fe28aceadc4d93cdf29e5e285eceadd 284 SUPERFAMILY SSF46626 20 248 1.75E-46 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_3446 5fe28aceadc4d93cdf29e5e285eceadd 284 Pfam PF02167 Cytochrome C1 family 38 282 1.3E-18 T 12-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 ALFP_3446 5fe28aceadc4d93cdf29e5e285eceadd 284 PRINTS PR00603 Cytochrome C1 signature 249 264 6.9E-6 T 12-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 ALFP_3446 5fe28aceadc4d93cdf29e5e285eceadd 284 PRINTS PR00603 Cytochrome C1 signature 230 249 6.9E-6 T 12-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 ALFP_3446 5fe28aceadc4d93cdf29e5e285eceadd 284 PRINTS PR00603 Cytochrome C1 signature 46 65 6.9E-6 T 12-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 ALFP_2300 9c106de7d312b6680e3a4531ddf9fb4d 136 PIRSF PIRSF002191 4 136 4.4E-49 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2300 9c106de7d312b6680e3a4531ddf9fb4d 136 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 13 130 29.586 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2300 9c106de7d312b6680e3a4531ddf9fb4d 136 ProSitePatterns PS01015 Ribosomal protein L19 signature. 102 117 - T 12-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_2300 9c106de7d312b6680e3a4531ddf9fb4d 136 PRINTS PR00061 Ribosomal protein L19 signature 20 49 3.8E-32 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2300 9c106de7d312b6680e3a4531ddf9fb4d 136 PRINTS PR00061 Ribosomal protein L19 signature 104 129 3.8E-32 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2300 9c106de7d312b6680e3a4531ddf9fb4d 136 PRINTS PR00061 Ribosomal protein L19 signature 50 79 3.8E-32 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2300 9c106de7d312b6680e3a4531ddf9fb4d 136 Gene3D G3DSA:2.30.30.790 10 134 3.5E-16 T 12-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2300 9c106de7d312b6680e3a4531ddf9fb4d 136 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 16 129 1.0E-45 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2300 9c106de7d312b6680e3a4531ddf9fb4d 136 SUPERFAMILY SSF50104 16 130 1.1E-42 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily ALFP_2300 9c106de7d312b6680e3a4531ddf9fb4d 136 Pfam PF01245 Ribosomal protein L19 30 129 6.8E-45 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1821 82aff675c354509efca2c81bc6c5b247 272 SUPERFAMILY SSF56436 1 207 5.89E-32 T 12-10-2018 IPR016187 C-type lectin fold ALFP_1821 82aff675c354509efca2c81bc6c5b247 272 Gene3D G3DSA:3.90.1580.10 1 206 4.0E-27 T 12-10-2018 ALFP_1821 82aff675c354509efca2c81bc6c5b247 272 Pfam PF03781 Sulfatase-modifying factor enzyme 1 1 176 1.8E-22 T 12-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 ALFP_0577 ca899e98ec1743575020e5215a16b727 124 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 47 76 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 ALFP_0577 ca899e98ec1743575020e5215a16b727 124 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 122 3.1E-35 T 12-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 ALFP_0577 ca899e98ec1743575020e5215a16b727 124 Pfam PF01597 Glycine cleavage H-protein 7 122 9.8E-37 T 12-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate ALFP_0577 ca899e98ec1743575020e5215a16b727 124 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 4 124 33.289 T 12-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 ALFP_0577 ca899e98ec1743575020e5215a16b727 124 SUPERFAMILY SSF51230 2 122 7.59E-35 T 12-10-2018 IPR011053 Single hybrid motif ALFP_0577 ca899e98ec1743575020e5215a16b727 124 Gene3D G3DSA:2.40.50.100 1 124 5.8E-39 T 12-10-2018 ALFP_1339 7469db97d0abd309e75c44db4a2fb4c5 323 SUPERFAMILY SSF46689 270 317 2.82E-6 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1339 7469db97d0abd309e75c44db4a2fb4c5 323 SMART SM00342 234 319 7.3E-25 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1339 7469db97d0abd309e75c44db4a2fb4c5 323 SUPERFAMILY SSF46689 217 268 3.84E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1339 7469db97d0abd309e75c44db4a2fb4c5 323 Pfam PF12833 Helix-turn-helix domain 240 317 1.2E-21 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1339 7469db97d0abd309e75c44db4a2fb4c5 323 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 271 315 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ALFP_1339 7469db97d0abd309e75c44db4a2fb4c5 323 Gene3D G3DSA:1.10.10.60 217 322 2.4E-33 T 12-10-2018 ALFP_1339 7469db97d0abd309e75c44db4a2fb4c5 323 Pfam PF14525 AraC-binding-like domain 30 195 1.6E-31 T 12-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like ALFP_2363 08f0cf64be0c8c8e3c8977561937b162 383 Gene3D G3DSA:3.90.220.20 9 379 8.7E-77 T 12-10-2018 ALFP_2363 08f0cf64be0c8c8e3c8977561937b162 383 Gene3D G3DSA:3.90.220.20 165 363 8.7E-77 T 12-10-2018 ALFP_2363 08f0cf64be0c8c8e3c8977561937b162 383 Pfam PF01420 Type I restriction modification DNA specificity domain 69 162 4.0E-5 T 12-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 ALFP_2363 08f0cf64be0c8c8e3c8977561937b162 383 Pfam PF01420 Type I restriction modification DNA specificity domain 198 355 2.4E-11 T 12-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 ALFP_2363 08f0cf64be0c8c8e3c8977561937b162 383 SUPERFAMILY SSF116734 196 380 8.99E-29 T 12-10-2018 ALFP_2363 08f0cf64be0c8c8e3c8977561937b162 383 SUPERFAMILY SSF116734 25 189 8.01E-27 T 12-10-2018 ALFP_0558 013725121314c5b63607f99077b3883e 349 Pfam PF01699 Sodium/calcium exchanger protein 17 169 1.1E-14 T 12-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 ALFP_0558 013725121314c5b63607f99077b3883e 349 Pfam PF01699 Sodium/calcium exchanger protein 208 345 1.5E-5 T 12-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 ALFP_0345 75b85ce9275e139cb0ef30721bde0e80 342 Pfam PF02371 Transposase IS116/IS110/IS902 family 213 291 1.7E-25 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 ALFP_0345 75b85ce9275e139cb0ef30721bde0e80 342 Pfam PF01548 Transposase 6 145 1.1E-15 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 ALFP_2758 75b85ce9275e139cb0ef30721bde0e80 342 Pfam PF02371 Transposase IS116/IS110/IS902 family 213 291 1.7E-25 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 ALFP_2758 75b85ce9275e139cb0ef30721bde0e80 342 Pfam PF01548 Transposase 6 145 1.1E-15 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 ALFP_1310 75b85ce9275e139cb0ef30721bde0e80 342 Pfam PF02371 Transposase IS116/IS110/IS902 family 213 291 1.7E-25 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 ALFP_1310 75b85ce9275e139cb0ef30721bde0e80 342 Pfam PF01548 Transposase 6 145 1.1E-15 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 ALFP_0360 75b85ce9275e139cb0ef30721bde0e80 342 Pfam PF02371 Transposase IS116/IS110/IS902 family 213 291 1.7E-25 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 ALFP_0360 75b85ce9275e139cb0ef30721bde0e80 342 Pfam PF01548 Transposase 6 145 1.1E-15 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 ALFP_1859 fc51dbde72cb43a0aeff490640596d01 367 Pfam PF07690 Major Facilitator Superfamily 12 335 9.4E-34 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_1859 fc51dbde72cb43a0aeff490640596d01 367 Gene3D G3DSA:1.20.1720.10 1 364 5.6E-68 T 12-10-2018 ALFP_1859 fc51dbde72cb43a0aeff490640596d01 367 SUPERFAMILY SSF103473 9 361 3.27E-47 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_3630 0f4738ddf531c5eb44b997410f99c496 628 SMART SM00267 212 382 3.9E-7 T 12-10-2018 IPR000160 GGDEF domain ALFP_3630 0f4738ddf531c5eb44b997410f99c496 628 Gene3D G3DSA:3.30.1040.50 87 135 4.1E-12 T 12-10-2018 ALFP_3630 0f4738ddf531c5eb44b997410f99c496 628 Gene3D G3DSA:3.20.20.450 394 619 6.4E-23 T 12-10-2018 IPR035919 EAL domain superfamily ALFP_3630 0f4738ddf531c5eb44b997410f99c496 628 Pfam PF00990 Diguanylate cyclase, GGDEF domain 224 376 8.2E-13 T 12-10-2018 IPR000160 GGDEF domain ALFP_3630 0f4738ddf531c5eb44b997410f99c496 628 SUPERFAMILY SSF55073 229 380 3.37E-15 T 12-10-2018 IPR029787 Nucleotide cyclase ALFP_3630 0f4738ddf531c5eb44b997410f99c496 628 Gene3D G3DSA:3.30.70.270 207 381 2.0E-23 T 12-10-2018 ALFP_3630 0f4738ddf531c5eb44b997410f99c496 628 SUPERFAMILY SSF141868 402 601 3.14E-16 T 12-10-2018 IPR035919 EAL domain superfamily ALFP_3630 0f4738ddf531c5eb44b997410f99c496 628 SMART SM00052 396 623 3.7E-4 T 12-10-2018 IPR001633 EAL domain ALFP_3630 0f4738ddf531c5eb44b997410f99c496 628 Pfam PF16448 LapD/MoxY periplasmic domain 6 130 9.4E-35 T 12-10-2018 IPR032244 LapD/MoxY, periplasmic domain ALFP_3630 0f4738ddf531c5eb44b997410f99c496 628 Pfam PF00563 EAL domain 403 602 5.5E-13 T 12-10-2018 IPR001633 EAL domain ALFP_2559 021f986988c4866b2e5c98c34f778755 131 SUPERFAMILY SSF51316 5 130 3.77E-60 T 12-10-2018 IPR011057 Mss4-like superfamily ALFP_2559 021f986988c4866b2e5c98c34f778755 131 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 6 129 1.7E-56 T 12-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 ALFP_2559 021f986988c4866b2e5c98c34f778755 131 Gene3D G3DSA:2.170.150.20 1 131 2.0E-62 T 12-10-2018 ALFP_2559 021f986988c4866b2e5c98c34f778755 131 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 7 130 38.097 T 12-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 ALFP_2559 021f986988c4866b2e5c98c34f778755 131 Pfam PF01641 SelR domain 10 129 5.5E-55 T 12-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 ALFP_0648 aa4add3b7d2e07d06331f419bb25cfb1 354 SUPERFAMILY SSF57884 6 93 1.44E-26 T 12-10-2018 IPR035451 Ada-like domain superfamily ALFP_0648 aa4add3b7d2e07d06331f419bb25cfb1 354 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 322 328 - T 12-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 ALFP_0648 aa4add3b7d2e07d06331f419bb25cfb1 354 Pfam PF02805 Metal binding domain of Ada 12 74 4.2E-28 T 12-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 ALFP_0648 aa4add3b7d2e07d06331f419bb25cfb1 354 Pfam PF12833 Helix-turn-helix domain 107 185 4.4E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0648 aa4add3b7d2e07d06331f419bb25cfb1 354 SUPERFAMILY SSF53155 191 269 4.12E-22 T 12-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 ALFP_0648 aa4add3b7d2e07d06331f419bb25cfb1 354 SUPERFAMILY SSF46689 87 133 8.17E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0648 aa4add3b7d2e07d06331f419bb25cfb1 354 SMART SM00342 101 184 3.3E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0648 aa4add3b7d2e07d06331f419bb25cfb1 354 SUPERFAMILY SSF46767 271 352 4.45E-30 T 12-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 ALFP_0648 aa4add3b7d2e07d06331f419bb25cfb1 354 Gene3D G3DSA:1.10.10.60 80 136 1.4E-23 T 12-10-2018 ALFP_0648 aa4add3b7d2e07d06331f419bb25cfb1 354 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 273 351 2.5E-32 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 ALFP_0648 aa4add3b7d2e07d06331f419bb25cfb1 354 Gene3D G3DSA:1.10.10.60 137 182 1.1E-5 T 12-10-2018 ALFP_0648 aa4add3b7d2e07d06331f419bb25cfb1 354 Gene3D G3DSA:1.10.10.10 271 354 6.8E-35 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0648 aa4add3b7d2e07d06331f419bb25cfb1 354 Gene3D G3DSA:3.40.10.10 3 77 3.7E-27 T 12-10-2018 IPR035451 Ada-like domain superfamily ALFP_0648 aa4add3b7d2e07d06331f419bb25cfb1 354 Gene3D G3DSA:3.30.160.70 183 270 8.5E-31 T 12-10-2018 ALFP_0648 aa4add3b7d2e07d06331f419bb25cfb1 354 PIRSF PIRSF000409 1 354 8.6E-138 T 12-10-2018 IPR016221 Bifunctional regulatory protein Ada ALFP_0648 aa4add3b7d2e07d06331f419bb25cfb1 354 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 272 351 2.5E-33 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 ALFP_1099 beca22d50ece92910849aee8ae3656e1 269 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 13 269 33.247 T 12-10-2018 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 ALFP_1099 beca22d50ece92910849aee8ae3656e1 269 Gene3D G3DSA:3.10.270.10 11 268 2.7E-85 T 12-10-2018 ALFP_1099 beca22d50ece92910849aee8ae3656e1 269 Pfam PF02649 Type I GTP cyclohydrolase folE2 13 265 8.0E-83 T 12-10-2018 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 ALFP_3648 423ad0a0f48869263808e7441b4e263e 569 Gene3D G3DSA:3.30.413.10 198 331 1.8E-48 T 12-10-2018 ALFP_3648 423ad0a0f48869263808e7441b4e263e 569 SUPERFAMILY SSF56014 422 553 3.93E-30 T 12-10-2018 ALFP_3648 423ad0a0f48869263808e7441b4e263e 569 PRINTS PR00397 Sirohaem Fe-binding site signature 425 443 7.5E-8 T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 ALFP_3648 423ad0a0f48869263808e7441b4e263e 569 PRINTS PR00397 Sirohaem Fe-binding site signature 473 491 7.5E-8 T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 ALFP_3648 423ad0a0f48869263808e7441b4e263e 569 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 473 489 - T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 ALFP_3648 423ad0a0f48869263808e7441b4e263e 569 SUPERFAMILY SSF56014 139 338 3.53E-54 T 12-10-2018 ALFP_3648 423ad0a0f48869263808e7441b4e263e 569 Gene3D G3DSA:3.30.413.10 422 559 3.5E-31 T 12-10-2018 ALFP_3648 423ad0a0f48869263808e7441b4e263e 569 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 1 567 54.173 T 12-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 ALFP_3648 423ad0a0f48869263808e7441b4e263e 569 SUPERFAMILY SSF55124 6 138 5.56E-26 T 12-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 ALFP_3648 423ad0a0f48869263808e7441b4e263e 569 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 163 323 8.6E-51 T 12-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 ALFP_3648 423ad0a0f48869263808e7441b4e263e 569 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 10 554 3.3E-244 T 12-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 ALFP_3648 423ad0a0f48869263808e7441b4e263e 569 Gene3D G3DSA:3.90.480.10 332 417 7.8E-28 T 12-10-2018 ALFP_3648 423ad0a0f48869263808e7441b4e263e 569 Gene3D G3DSA:3.90.480.10 72 152 1.8E-19 T 12-10-2018 ALFP_3648 423ad0a0f48869263808e7441b4e263e 569 SUPERFAMILY SSF55124 340 417 1.52E-19 T 12-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 ALFP_3648 423ad0a0f48869263808e7441b4e263e 569 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 71 129 2.7E-9 T 12-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 ALFP_3648 423ad0a0f48869263808e7441b4e263e 569 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 347 410 1.8E-14 T 12-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 ALFP_2639 136271d9198ea57ac6acb9c4e8fdf84b 444 Pfam PF00263 Bacterial type II and III secretion system protein 239 401 3.3E-43 T 12-10-2018 IPR004846 Type II/III secretion system GO:0009306 ALFP_2639 136271d9198ea57ac6acb9c4e8fdf84b 444 Pfam PF13629 Pilus formation protein N terminal region 40 114 6.2E-16 T 12-10-2018 IPR032789 Pilus formation protein, N-terminal ALFP_2639 136271d9198ea57ac6acb9c4e8fdf84b 444 PRINTS PR00811 Bacterial general secretion pathway protein D signature 388 402 4.5E-14 T 12-10-2018 IPR001775 GspD/PilQ family ALFP_2639 136271d9198ea57ac6acb9c4e8fdf84b 444 PRINTS PR00811 Bacterial general secretion pathway protein D signature 235 259 4.5E-14 T 12-10-2018 IPR001775 GspD/PilQ family ALFP_2639 136271d9198ea57ac6acb9c4e8fdf84b 444 PRINTS PR00811 Bacterial general secretion pathway protein D signature 179 189 4.5E-14 T 12-10-2018 IPR001775 GspD/PilQ family ALFP_2639 136271d9198ea57ac6acb9c4e8fdf84b 444 PRINTS PR00811 Bacterial general secretion pathway protein D signature 365 383 4.5E-14 T 12-10-2018 IPR001775 GspD/PilQ family ALFP_2639 136271d9198ea57ac6acb9c4e8fdf84b 444 PRINTS PR00811 Bacterial general secretion pathway protein D signature 272 282 4.5E-14 T 12-10-2018 IPR001775 GspD/PilQ family ALFP_0290 8296acb0af0dba6b34e8b0fd9887523e 81 Gene3D G3DSA:1.10.1200.10 2 77 2.6E-26 T 12-10-2018 IPR036736 ACP-like superfamily ALFP_0290 8296acb0af0dba6b34e8b0fd9887523e 81 SUPERFAMILY SSF47336 2 77 1.57E-12 T 12-10-2018 IPR036736 ACP-like superfamily ALFP_0290 8296acb0af0dba6b34e8b0fd9887523e 81 Pfam PF00550 Phosphopantetheine attachment site 9 68 7.3E-8 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain ALFP_1839 ab728547a8a65576c521bf1f18d65d10 112 Pfam PF06366 Flagellar protein FlhE 18 111 5.0E-8 T 12-10-2018 IPR009420 Flagellar protein FlhE ALFP_0607 28cda54558b17ca3b5bba2826de00131 789 Pfam PF00534 Glycosyl transferases group 1 201 353 1.2E-24 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 ALFP_0607 28cda54558b17ca3b5bba2826de00131 789 Pfam PF00534 Glycosyl transferases group 1 599 764 1.3E-30 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 ALFP_0607 28cda54558b17ca3b5bba2826de00131 789 Gene3D G3DSA:3.40.50.2000 63 386 1.7E-51 T 12-10-2018 ALFP_0607 28cda54558b17ca3b5bba2826de00131 789 Gene3D G3DSA:3.40.50.2000 437 784 9.5E-53 T 12-10-2018 ALFP_0607 28cda54558b17ca3b5bba2826de00131 789 Pfam PF13477 Glycosyl transferase 4-like 420 569 9.0E-26 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 ALFP_0607 28cda54558b17ca3b5bba2826de00131 789 SUPERFAMILY SSF53756 20 389 1.49E-68 T 12-10-2018 ALFP_0607 28cda54558b17ca3b5bba2826de00131 789 Gene3D G3DSA:3.40.50.2000 189 375 1.7E-51 T 12-10-2018 ALFP_0607 28cda54558b17ca3b5bba2826de00131 789 Gene3D G3DSA:3.40.50.2000 595 771 9.5E-53 T 12-10-2018 ALFP_0607 28cda54558b17ca3b5bba2826de00131 789 Pfam PF13439 Glycosyltransferase Family 4 31 193 3.6E-13 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 ALFP_0607 28cda54558b17ca3b5bba2826de00131 789 SUPERFAMILY SSF53756 437 785 4.08E-66 T 12-10-2018 ALFP_0422 07e0f0f839a95c6acfd99e1274ff8569 404 SUPERFAMILY SSF53335 30 394 1.54E-83 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_0422 07e0f0f839a95c6acfd99e1274ff8569 404 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 91 328 5.1E-46 T 12-10-2018 IPR003788 Protein arginine methyltransferase NDUFAF7 Reactome: R-HSA-6799198 ALFP_0422 07e0f0f839a95c6acfd99e1274ff8569 404 Gene3D G3DSA:3.40.50.12710 12 404 2.3E-117 T 12-10-2018 IPR038375 Protein arginine methyltransferase NDUFAF7 superfamily Reactome: R-HSA-6799198 ALFP_1635 51892d01ea631f869fdca1ec4f908089 348 Pfam PF00248 Aldo/keto reductase family 16 339 8.9E-76 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain ALFP_1635 51892d01ea631f869fdca1ec4f908089 348 SUPERFAMILY SSF51430 1 346 3.8E-106 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily ALFP_1635 51892d01ea631f869fdca1ec4f908089 348 Gene3D G3DSA:3.20.20.100 1 348 1.6E-131 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily ALFP_0221 7a4487fdf6d3bbdbd7ad3792f4a5bbe2 322 Gene3D G3DSA:3.40.190.10 124 247 1.6E-109 T 12-10-2018 ALFP_0221 7a4487fdf6d3bbdbd7ad3792f4a5bbe2 322 PIRSF PIRSF017082 4 322 1.0E-82 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0221 7a4487fdf6d3bbdbd7ad3792f4a5bbe2 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 318 3.5E-77 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0221 7a4487fdf6d3bbdbd7ad3792f4a5bbe2 322 Gene3D G3DSA:3.40.190.150 27 312 1.6E-109 T 12-10-2018 ALFP_0221 7a4487fdf6d3bbdbd7ad3792f4a5bbe2 322 SUPERFAMILY SSF53850 113 291 5.8E-16 T 12-10-2018 ALFP_1685 6634aa91d050aa36439df4fd1e1818b4 308 SUPERFAMILY SSF117892 52 186 1.57E-37 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily ALFP_1685 6634aa91d050aa36439df4fd1e1818b4 308 Pfam PF01145 SPFH domain / Band 7 family 25 195 4.8E-28 T 12-10-2018 IPR001107 Band 7 domain ALFP_1685 6634aa91d050aa36439df4fd1e1818b4 308 SMART SM00244 21 179 1.4E-54 T 12-10-2018 IPR001107 Band 7 domain ALFP_1685 6634aa91d050aa36439df4fd1e1818b4 308 Gene3D G3DSA:3.30.479.30 49 181 5.1E-39 T 12-10-2018 ALFP_1685 6634aa91d050aa36439df4fd1e1818b4 308 PRINTS PR00721 Stomatin signature 155 173 4.0E-29 T 12-10-2018 IPR001972 Stomatin family GO:0016020 ALFP_1685 6634aa91d050aa36439df4fd1e1818b4 308 PRINTS PR00721 Stomatin signature 28 50 4.0E-29 T 12-10-2018 IPR001972 Stomatin family GO:0016020 ALFP_1685 6634aa91d050aa36439df4fd1e1818b4 308 PRINTS PR00721 Stomatin signature 76 97 4.0E-29 T 12-10-2018 IPR001972 Stomatin family GO:0016020 ALFP_1685 6634aa91d050aa36439df4fd1e1818b4 308 PRINTS PR00721 Stomatin signature 131 154 4.0E-29 T 12-10-2018 IPR001972 Stomatin family GO:0016020 ALFP_1685 6634aa91d050aa36439df4fd1e1818b4 308 PRINTS PR00721 Stomatin signature 111 128 4.0E-29 T 12-10-2018 IPR001972 Stomatin family GO:0016020 ALFP_1685 6634aa91d050aa36439df4fd1e1818b4 308 PRINTS PR00721 Stomatin signature 174 195 4.0E-29 T 12-10-2018 IPR001972 Stomatin family GO:0016020 ALFP_1685 6634aa91d050aa36439df4fd1e1818b4 308 ProSitePatterns PS01270 Band 7 protein family signature. 135 163 - T 12-10-2018 IPR018080 Band 7/stomatin-like, conserved site ALFP_0407 728239affc382cd96323da2a02a12d36 240 SMART SM00382 32 214 1.4E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0407 728239affc382cd96323da2a02a12d36 240 Gene3D G3DSA:3.40.50.300 1 233 5.5E-54 T 12-10-2018 ALFP_0407 728239affc382cd96323da2a02a12d36 240 Pfam PF00005 ABC transporter 23 165 4.3E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0407 728239affc382cd96323da2a02a12d36 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0407 728239affc382cd96323da2a02a12d36 240 SUPERFAMILY SSF52540 4 229 7.73E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0666 1fbef2fe6e0a5620d2361a967fee3bb4 153 Pfam PF00582 Universal stress protein family 1 148 6.4E-30 T 12-10-2018 IPR006016 UspA ALFP_0666 1fbef2fe6e0a5620d2361a967fee3bb4 153 SUPERFAMILY SSF52402 1 148 1.34E-35 T 12-10-2018 ALFP_0666 1fbef2fe6e0a5620d2361a967fee3bb4 153 PRINTS PR01438 Universal stress protein signature 108 120 4.3E-19 T 12-10-2018 IPR006015 Universal stress protein A ALFP_0666 1fbef2fe6e0a5620d2361a967fee3bb4 153 PRINTS PR01438 Universal stress protein signature 126 148 4.3E-19 T 12-10-2018 IPR006015 Universal stress protein A ALFP_0666 1fbef2fe6e0a5620d2361a967fee3bb4 153 PRINTS PR01438 Universal stress protein signature 2 20 4.3E-19 T 12-10-2018 IPR006015 Universal stress protein A ALFP_0666 1fbef2fe6e0a5620d2361a967fee3bb4 153 Gene3D G3DSA:3.40.50.620 1 149 5.1E-37 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_0666 1fbef2fe6e0a5620d2361a967fee3bb4 153 PIRSF PIRSF006276 1 151 4.0E-18 T 12-10-2018 IPR006015 Universal stress protein A ALFP_2247 7240b54a3c5cd521b3a16e8a32e7094d 417 Pfam PF01266 FAD dependent oxidoreductase 2 403 4.8E-64 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 ALFP_2247 7240b54a3c5cd521b3a16e8a32e7094d 417 SUPERFAMILY SSF51905 1 412 5.7E-50 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2247 7240b54a3c5cd521b3a16e8a32e7094d 417 Gene3D G3DSA:3.50.50.60 107 410 8.3E-48 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2247 7240b54a3c5cd521b3a16e8a32e7094d 417 SUPERFAMILY SSF54373 275 364 1.44E-14 T 12-10-2018 ALFP_2247 7240b54a3c5cd521b3a16e8a32e7094d 417 Gene3D G3DSA:3.50.50.60 1 75 3.3E-12 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2247 7240b54a3c5cd521b3a16e8a32e7094d 417 Gene3D G3DSA:3.30.9.10 134 367 8.3E-48 T 12-10-2018 ALFP_2644 4ad4751f2aaae0a383dd6e0b09ef0947 70 Pfam PF04964 Flp/Fap pilin component 12 57 3.0E-20 T 12-10-2018 IPR007047 Flp/Fap pilin component ALFP_3087 9bbabc26de99235b415ba58908becb22 462 Pfam PF00860 Permease family 19 399 1.6E-102 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 ALFP_3087 9bbabc26de99235b415ba58908becb22 462 TIGRFAM TIGR03173 pbuX: xanthine permease 22 432 3.4E-147 T 12-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 ALFP_3087 9bbabc26de99235b415ba58908becb22 462 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 13 429 3.3E-113 T 12-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 ALFP_3266 0aeda5ca9c6bbf09d87b90a9c086a522 231 Pfam PF00072 Response regulator receiver domain 4 114 1.3E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_3266 0aeda5ca9c6bbf09d87b90a9c086a522 231 Pfam PF02954 Bacterial regulatory protein, Fis family 180 220 1.6E-4 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_3266 0aeda5ca9c6bbf09d87b90a9c086a522 231 SUPERFAMILY SSF46689 159 223 3.58E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_3266 0aeda5ca9c6bbf09d87b90a9c086a522 231 Gene3D G3DSA:3.40.50.2300 1 132 1.3E-35 T 12-10-2018 ALFP_3266 0aeda5ca9c6bbf09d87b90a9c086a522 231 Gene3D G3DSA:1.10.10.60 169 225 2.9E-14 T 12-10-2018 ALFP_3266 0aeda5ca9c6bbf09d87b90a9c086a522 231 SMART SM00448 2 114 3.5E-34 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_3266 0aeda5ca9c6bbf09d87b90a9c086a522 231 SUPERFAMILY SSF52172 1 130 9.39E-39 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_0654 b67e0be98d3e2a085b8efc294285548b 273 Pfam PF00005 ABC transporter 34 190 2.4E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0654 b67e0be98d3e2a085b8efc294285548b 273 SUPERFAMILY SSF52540 17 260 2.33E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0654 b67e0be98d3e2a085b8efc294285548b 273 Gene3D G3DSA:3.40.50.300 14 261 8.6E-55 T 12-10-2018 ALFP_0654 b67e0be98d3e2a085b8efc294285548b 273 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 238 259 3.8E-9 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal ALFP_0654 b67e0be98d3e2a085b8efc294285548b 273 SMART SM00382 42 262 6.0E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3271 3a162535552bfff02c86fa988632a3f8 174 Gene3D G3DSA:2.160.10.10 1 173 3.1E-62 T 12-10-2018 ALFP_3271 3a162535552bfff02c86fa988632a3f8 174 SUPERFAMILY SSF51161 2 170 7.9E-45 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily ALFP_3271 3a162535552bfff02c86fa988632a3f8 174 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 122 4.5E-9 T 12-10-2018 IPR001451 Hexapeptide repeat ALFP_1236 990d002bb923eb0ac1474ab21ad375b5 133 SUPERFAMILY SSF160214 41 129 3.79E-18 T 12-10-2018 IPR035924 FlaG-like superfamily ALFP_1236 990d002bb923eb0ac1474ab21ad375b5 133 Pfam PF03646 FlaG protein 53 127 7.3E-16 T 12-10-2018 IPR005186 FlaG protein ALFP_1236 990d002bb923eb0ac1474ab21ad375b5 133 Gene3D G3DSA:3.30.160.170 33 129 3.5E-11 T 12-10-2018 IPR035924 FlaG-like superfamily ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 Gene3D G3DSA:2.60.34.10 384 524 4.0E-66 T 12-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 Pfam PF00012 Hsp70 protein 4 604 1.2E-262 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 Gene3D G3DSA:3.90.640.10 230 317 2.1E-164 T 12-10-2018 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 SUPERFAMILY SSF100920 386 541 4.84E-60 T 12-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 Gene3D G3DSA:3.30.420.40 180 367 2.1E-164 T 12-10-2018 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 PRINTS PR00301 70kDa heat shock protein signature 3 16 4.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 PRINTS PR00301 70kDa heat shock protein signature 31 43 4.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 PRINTS PR00301 70kDa heat shock protein signature 199 209 4.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 PRINTS PR00301 70kDa heat shock protein signature 366 386 4.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 PRINTS PR00301 70kDa heat shock protein signature 54 62 4.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 PRINTS PR00301 70kDa heat shock protein signature 138 158 4.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 PRINTS PR00301 70kDa heat shock protein signature 335 351 4.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 PRINTS PR00301 70kDa heat shock protein signature 389 408 4.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 PRINTS PR00301 70kDa heat shock protein signature 470 486 4.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 Gene3D G3DSA:1.20.1270.10 525 608 1.5E-23 T 12-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 Gene3D G3DSA:3.30.420.40 5 380 2.1E-164 T 12-10-2018 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 604 7.3E-286 T 12-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 SUPERFAMILY SSF53067 4 183 7.96E-65 T 12-10-2018 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 SUPERFAMILY SSF100934 508 607 3.14E-20 T 12-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 193 206 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 SUPERFAMILY SSF53067 188 383 9.88E-68 T 12-10-2018 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 637 36.555 T 12-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 ALFP_2654 d5874b9b6f01f4c25ceaf24ffc250410 641 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 338 352 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 ALFP_0524 6dc57ec8b68403b5847246fd21f627a7 384 Pfam PF13378 Enolase C-terminal domain-like 153 366 1.5E-42 T 12-10-2018 IPR029065 Enolase C-terminal domain-like ALFP_0524 6dc57ec8b68403b5847246fd21f627a7 384 Gene3D G3DSA:3.30.390.10 1 121 4.6E-37 T 12-10-2018 IPR029017 Enolase-like, N-terminal ALFP_0524 6dc57ec8b68403b5847246fd21f627a7 384 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 98 123 - T 12-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 ALFP_0524 6dc57ec8b68403b5847246fd21f627a7 384 Gene3D G3DSA:3.20.20.120 122 363 1.7E-59 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily ALFP_0524 6dc57ec8b68403b5847246fd21f627a7 384 SUPERFAMILY SSF51604 111 373 2.36E-55 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily ALFP_0524 6dc57ec8b68403b5847246fd21f627a7 384 SMART SM00922 142 252 2.7E-10 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal ALFP_0524 6dc57ec8b68403b5847246fd21f627a7 384 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 30 123 4.6E-20 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain ALFP_0524 6dc57ec8b68403b5847246fd21f627a7 384 SUPERFAMILY SSF54826 1 127 6.19E-35 T 12-10-2018 ALFP_0782 f75124ef3d7ebd62660cc8590ba25acf 360 Pfam PF00268 Ribonucleotide reductase, small chain 15 316 5.7E-49 T 12-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 ALFP_0782 f75124ef3d7ebd62660cc8590ba25acf 360 SUPERFAMILY SSF47240 1 324 4.98E-107 T 12-10-2018 IPR009078 Ferritin-like superfamily ALFP_0782 f75124ef3d7ebd62660cc8590ba25acf 360 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 98 114 - T 12-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 ALFP_0782 f75124ef3d7ebd62660cc8590ba25acf 360 Gene3D G3DSA:1.10.620.20 1 324 3.5E-138 T 12-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 ALFP_2844 aa3d8476978951f18ba37d5dd03b939a 372 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 314 358 3.9E-8 T 12-10-2018 IPR006260 TonB/TolA, C-terminal ALFP_2844 aa3d8476978951f18ba37d5dd03b939a 372 Pfam PF13103 TonB C terminal 283 359 3.1E-12 T 12-10-2018 ALFP_2844 aa3d8476978951f18ba37d5dd03b939a 372 SUPERFAMILY SSF74653 282 363 1.57E-9 T 12-10-2018 ALFP_2844 aa3d8476978951f18ba37d5dd03b939a 372 TIGRFAM TIGR02794 tolA_full: protein TolA 23 359 1.9E-55 T 12-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 ALFP_0787 e0487f3df6157aa38dd83fa5475f4de9 100 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 2 84 4.6E-22 T 12-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 ALFP_0787 e0487f3df6157aa38dd83fa5475f4de9 100 Hamap MF_00910 Cell division protein FtsL [ftsL]. 1 84 15.061 T 12-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 ALFP_0787 e0487f3df6157aa38dd83fa5475f4de9 100 Pfam PF04999 Cell division protein FtsL 3 84 9.6E-16 T 12-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 ALFP_1390 ee2217972aa1f979cf996dc5cff13578 355 ProSitePatterns PS00356 LacI-type HTH domain signature. 6 24 - T 12-10-2018 ALFP_1390 ee2217972aa1f979cf996dc5cff13578 355 SUPERFAMILY SSF47413 3 61 8.04E-17 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_1390 ee2217972aa1f979cf996dc5cff13578 355 Gene3D G3DSA:3.40.50.2300 58 319 4.4E-63 T 12-10-2018 ALFP_1390 ee2217972aa1f979cf996dc5cff13578 355 Gene3D G3DSA:1.10.260.40 1 57 6.5E-22 T 12-10-2018 ALFP_1390 ee2217972aa1f979cf996dc5cff13578 355 SMART SM00354 3 73 9.5E-28 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 ALFP_1390 ee2217972aa1f979cf996dc5cff13578 355 Gene3D G3DSA:3.40.50.2300 161 303 4.4E-63 T 12-10-2018 ALFP_1390 ee2217972aa1f979cf996dc5cff13578 355 SUPERFAMILY SSF53822 60 327 8.64E-56 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_1390 ee2217972aa1f979cf996dc5cff13578 355 Pfam PF13377 Periplasmic binding protein-like domain 170 345 5.0E-29 T 12-10-2018 ALFP_1390 ee2217972aa1f979cf996dc5cff13578 355 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 50 4.1E-16 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 ALFP_0891 83d251fc55aca44d9d5dbdc8804f35ec 256 SUPERFAMILY SSF51735 2 248 3.71E-59 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0891 83d251fc55aca44d9d5dbdc8804f35ec 256 Pfam PF00106 short chain dehydrogenase 2 189 1.0E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0891 83d251fc55aca44d9d5dbdc8804f35ec 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 3.2E-25 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0891 83d251fc55aca44d9d5dbdc8804f35ec 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 3.2E-25 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0891 83d251fc55aca44d9d5dbdc8804f35ec 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 3.2E-25 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0891 83d251fc55aca44d9d5dbdc8804f35ec 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 3.2E-25 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0891 83d251fc55aca44d9d5dbdc8804f35ec 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 3.2E-25 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0891 83d251fc55aca44d9d5dbdc8804f35ec 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2 180 6.2E-4 T 12-10-2018 ALFP_0891 83d251fc55aca44d9d5dbdc8804f35ec 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 1.9E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0891 83d251fc55aca44d9d5dbdc8804f35ec 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 1.9E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0891 83d251fc55aca44d9d5dbdc8804f35ec 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 1.9E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0891 83d251fc55aca44d9d5dbdc8804f35ec 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_0891 83d251fc55aca44d9d5dbdc8804f35ec 256 Gene3D G3DSA:3.40.50.720 1 252 1.1E-54 T 12-10-2018 ALFP_3726 bde5dd01003cb0bee9f2c9ea8115fa39 235 Gene3D G3DSA:1.10.357.10 29 229 6.1E-64 T 12-10-2018 ALFP_3726 bde5dd01003cb0bee9f2c9ea8115fa39 235 SUPERFAMILY SSF48498 105 226 2.45E-26 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily ALFP_3726 bde5dd01003cb0bee9f2c9ea8115fa39 235 Pfam PF00440 Bacterial regulatory proteins, tetR family 32 78 1.1E-15 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_3726 bde5dd01003cb0bee9f2c9ea8115fa39 235 SUPERFAMILY SSF46689 23 98 7.18E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_3726 bde5dd01003cb0bee9f2c9ea8115fa39 235 ProSitePatterns PS01081 TetR-type HTH domain signature. 44 74 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site ALFP_3726 bde5dd01003cb0bee9f2c9ea8115fa39 235 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 45 5.4E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_3726 bde5dd01003cb0bee9f2c9ea8115fa39 235 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 53 76 5.4E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_0571 cace59efc9cb595ff89ec5b445263fee 361 SUPERFAMILY SSF52540 98 344 6.32E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0571 cace59efc9cb595ff89ec5b445263fee 361 Pfam PF01883 Iron-sulfur cluster assembly protein 6 68 9.0E-6 T 12-10-2018 IPR002744 MIP18 family-like ALFP_0571 cace59efc9cb595ff89ec5b445263fee 361 Gene3D G3DSA:3.40.50.300 86 337 3.7E-83 T 12-10-2018 ALFP_0571 cace59efc9cb595ff89ec5b445263fee 361 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 95 338 7.6E-100 T 12-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 ALFP_0571 cace59efc9cb595ff89ec5b445263fee 361 SUPERFAMILY SSF117916 1 68 4.25E-5 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily ALFP_0571 cace59efc9cb595ff89ec5b445263fee 361 Hamap MF_02040 Iron-sulfur cluster carrier protein. 91 339 36.557 T 12-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein ALFP_0571 cace59efc9cb595ff89ec5b445263fee 361 ProSitePatterns PS01215 Mrp family signature. 202 218 - T 12-10-2018 IPR000808 Mrp, conserved site GO:0005524 ALFP_1059 8874cbc7c56b7a079a7ccd246a6b3a91 441 Pfam PF01266 FAD dependent oxidoreductase 38 395 5.6E-41 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 ALFP_1059 8874cbc7c56b7a079a7ccd246a6b3a91 441 Gene3D G3DSA:3.50.50.60 38 395 1.2E-50 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1059 8874cbc7c56b7a079a7ccd246a6b3a91 441 SUPERFAMILY SSF51905 37 404 1.65E-30 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1059 8874cbc7c56b7a079a7ccd246a6b3a91 441 Gene3D G3DSA:3.30.9.10 130 357 1.2E-50 T 12-10-2018 ALFP_0180 fa9deac5d13b63b0b8a2780fbdde8d91 199 Gene3D G3DSA:3.90.1140.10 15 193 1.6E-29 T 12-10-2018 ALFP_0180 fa9deac5d13b63b0b8a2780fbdde8d91 199 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 20 189 6.7E-22 T 12-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 ALFP_0180 fa9deac5d13b63b0b8a2780fbdde8d91 199 SUPERFAMILY SSF55144 20 189 8.11E-24 T 12-10-2018 IPR009097 Cyclic phosphodiesterase ALFP_0180 fa9deac5d13b63b0b8a2780fbdde8d91 199 Pfam PF13563 2'-5' RNA ligase superfamily 51 150 4.7E-7 T 12-10-2018 ALFP_0499 b5e75852b820a5470e428c2daeb6087f 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 50 5.3E-20 T 12-10-2018 ALFP_0499 b5e75852b820a5470e428c2daeb6087f 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 7.1E-15 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 ALFP_0499 b5e75852b820a5470e428c2daeb6087f 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 7.1E-15 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 ALFP_0499 b5e75852b820a5470e428c2daeb6087f 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 7.1E-15 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 ALFP_0499 b5e75852b820a5470e428c2daeb6087f 153 Gene3D G3DSA:3.30.70.920 56 150 1.7E-19 T 12-10-2018 ALFP_0499 b5e75852b820a5470e428c2daeb6087f 153 SUPERFAMILY SSF46785 2 63 1.27E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0499 b5e75852b820a5470e428c2daeb6087f 153 Pfam PF01037 Lrp/AsnC ligand binding domain 77 142 1.6E-15 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain ALFP_0499 b5e75852b820a5470e428c2daeb6087f 153 SMART SM00344 3 112 4.9E-37 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 ALFP_0499 b5e75852b820a5470e428c2daeb6087f 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 21 47 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site ALFP_0499 b5e75852b820a5470e428c2daeb6087f 153 Gene3D G3DSA:1.10.10.10 4 54 1.6E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0499 b5e75852b820a5470e428c2daeb6087f 153 SUPERFAMILY SSF54909 66 147 2.01E-15 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel ALFP_1038 295558984b007db0a941a6785d8ebe32 592 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 14 591 4.2E-238 T 12-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1038 295558984b007db0a941a6785d8ebe32 592 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 48 57 - T 12-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1038 295558984b007db0a941a6785d8ebe32 592 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 11 592 7.6E-274 T 12-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1038 295558984b007db0a941a6785d8ebe32 592 PIRSF PIRSF000171 4 582 1.2E-39 T 12-10-2018 ALFP_1038 295558984b007db0a941a6785d8ebe32 592 SUPERFAMILY SSF46977 457 592 3.53E-44 T 12-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1038 295558984b007db0a941a6785d8ebe32 592 Gene3D G3DSA:4.10.80.40 552 592 1.0E-10 T 12-10-2018 ALFP_1038 295558984b007db0a941a6785d8ebe32 592 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 179 204 4.9E-7 T 12-10-2018 ALFP_1038 295558984b007db0a941a6785d8ebe32 592 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 383 398 4.9E-7 T 12-10-2018 ALFP_1038 295558984b007db0a941a6785d8ebe32 592 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 14 36 4.9E-7 T 12-10-2018 ALFP_1038 295558984b007db0a941a6785d8ebe32 592 Gene3D G3DSA:3.50.50.60 14 419 2.3E-163 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1038 295558984b007db0a941a6785d8ebe32 592 SUPERFAMILY SSF56425 241 358 5.38E-42 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1038 295558984b007db0a941a6785d8ebe32 592 Gene3D G3DSA:3.90.700.10 251 353 2.3E-163 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1038 295558984b007db0a941a6785d8ebe32 592 Pfam PF02910 Fumarate reductase flavoprotein C-term 466 591 1.6E-38 T 12-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1038 295558984b007db0a941a6785d8ebe32 592 SUPERFAMILY SSF51905 9 428 1.21E-79 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1038 295558984b007db0a941a6785d8ebe32 592 Pfam PF00890 FAD binding domain 14 408 3.0E-118 T 12-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1038 295558984b007db0a941a6785d8ebe32 592 Gene3D G3DSA:1.20.58.100 435 551 1.6E-32 T 12-10-2018 ALFP_2797 c24200e6c36f374a82751b43abd42976 414 Pfam PF00271 Helicase conserved C-terminal domain 203 309 1.5E-28 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_2797 c24200e6c36f374a82751b43abd42976 414 Gene3D G3DSA:3.40.50.300 183 362 3.0E-49 T 12-10-2018 ALFP_2797 c24200e6c36f374a82751b43abd42976 414 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 123 131 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site ALFP_2797 c24200e6c36f374a82751b43abd42976 414 Pfam PF00270 DEAD/DEAH box helicase 2 166 3.9E-45 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ALFP_2797 c24200e6c36f374a82751b43abd42976 414 SMART SM00487 1 192 1.2E-47 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain ALFP_2797 c24200e6c36f374a82751b43abd42976 414 SMART SM00490 228 309 3.3E-32 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_2797 c24200e6c36f374a82751b43abd42976 414 SUPERFAMILY SSF52540 44 330 1.07E-75 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2797 c24200e6c36f374a82751b43abd42976 414 Gene3D G3DSA:3.40.50.300 1 181 2.9E-66 T 12-10-2018 ALFP_1971 5610caf2b212b5c59fc0f848cd4fa1c9 238 Pfam PF00696 Amino acid kinase family 7 216 3.4E-28 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 ALFP_1971 5610caf2b212b5c59fc0f848cd4fa1c9 238 PIRSF PIRSF005650 1 238 9.7E-92 T 12-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 ALFP_1971 5610caf2b212b5c59fc0f848cd4fa1c9 238 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 6 237 4.2E-99 T 12-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 ALFP_1971 5610caf2b212b5c59fc0f848cd4fa1c9 238 Gene3D G3DSA:3.40.1160.10 2 238 5.3E-78 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily ALFP_1971 5610caf2b212b5c59fc0f848cd4fa1c9 238 Hamap MF_01220_B Uridylate kinase [pyrH]. 4 237 44.271 T 12-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 ALFP_1971 5610caf2b212b5c59fc0f848cd4fa1c9 238 SUPERFAMILY SSF53633 4 237 4.32E-72 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily ALFP_3218 80b5b467225c3ac5d21e2a233ee88a4a 502 Gene3D G3DSA:3.40.1020.10 328 502 2.2E-72 T 12-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 ALFP_3218 80b5b467225c3ac5d21e2a233ee88a4a 502 SUPERFAMILY SSF53686 5 355 1.57E-99 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme ALFP_3218 80b5b467225c3ac5d21e2a233ee88a4a 502 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 320 408 1.8E-22 T 12-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 ALFP_3218 80b5b467225c3ac5d21e2a233ee88a4a 502 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 416 502 2.2E-24 T 12-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 ALFP_3218 80b5b467225c3ac5d21e2a233ee88a4a 502 Gene3D G3DSA:3.40.50.1100 14 317 8.8E-139 T 12-10-2018 ALFP_3218 80b5b467225c3ac5d21e2a233ee88a4a 502 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 4 502 2.4E-243 T 12-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 ALFP_3218 80b5b467225c3ac5d21e2a233ee88a4a 502 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 42 55 - T 12-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 ALFP_3218 80b5b467225c3ac5d21e2a233ee88a4a 502 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 305 3.1E-82 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme ALFP_3218 80b5b467225c3ac5d21e2a233ee88a4a 502 Gene3D G3DSA:3.40.50.1100 50 146 8.8E-139 T 12-10-2018 ALFP_3218 80b5b467225c3ac5d21e2a233ee88a4a 502 SUPERFAMILY SSF55021 409 502 6.64E-28 T 12-10-2018 ALFP_0794 1507877d89174b4b05d8865db304f74d 468 Gene3D G3DSA:3.90.190.20 312 467 5.6E-43 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 ALFP_0794 1507877d89174b4b05d8865db304f74d 468 Pfam PF08245 Mur ligase middle domain 110 294 2.1E-26 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 ALFP_0794 1507877d89174b4b05d8865db304f74d 468 Gene3D G3DSA:3.40.1190.10 94 311 3.6E-76 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 ALFP_0794 1507877d89174b4b05d8865db304f74d 468 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 5 468 42.53 T 12-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_0794 1507877d89174b4b05d8865db304f74d 468 Pfam PF02875 Mur ligase family, glutamate ligase domain 315 405 8.3E-20 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 ALFP_0794 1507877d89174b4b05d8865db304f74d 468 Gene3D G3DSA:3.40.50.720 6 92 1.6E-30 T 12-10-2018 ALFP_0794 1507877d89174b4b05d8865db304f74d 468 SUPERFAMILY SSF53244 313 463 7.33E-45 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 ALFP_0794 1507877d89174b4b05d8865db304f74d 468 SUPERFAMILY SSF53623 91 311 1.27E-71 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 ALFP_0794 1507877d89174b4b05d8865db304f74d 468 SUPERFAMILY SSF51984 6 92 3.79E-27 T 12-10-2018 ALFP_0794 1507877d89174b4b05d8865db304f74d 468 Pfam PF01225 Mur ligase family, catalytic domain 7 105 3.6E-26 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 ALFP_0794 1507877d89174b4b05d8865db304f74d 468 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 7 463 1.1E-166 T 12-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_1874 e00e0a874aadaf35aeb89bd3a4ae4d30 305 Gene3D G3DSA:1.10.10.10 5 92 1.5E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1874 e00e0a874aadaf35aeb89bd3a4ae4d30 305 Pfam PF03466 LysR substrate binding domain 92 297 9.9E-35 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1874 e00e0a874aadaf35aeb89bd3a4ae4d30 305 SUPERFAMILY SSF46785 5 115 1.48E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1874 e00e0a874aadaf35aeb89bd3a4ae4d30 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 2.4E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1874 e00e0a874aadaf35aeb89bd3a4ae4d30 305 SUPERFAMILY SSF53850 93 298 1.99E-36 T 12-10-2018 ALFP_1874 e00e0a874aadaf35aeb89bd3a4ae4d30 305 Gene3D G3DSA:3.40.190.290 94 298 5.6E-45 T 12-10-2018 ALFP_1478 33c241a18c258996404fff7897d58936 400 PRINTS PR00799 Aspartate aminotransferase signature 209 221 3.4E-40 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 ALFP_1478 33c241a18c258996404fff7897d58936 400 PRINTS PR00799 Aspartate aminotransferase signature 276 301 3.4E-40 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 ALFP_1478 33c241a18c258996404fff7897d58936 400 PRINTS PR00799 Aspartate aminotransferase signature 178 197 3.4E-40 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 ALFP_1478 33c241a18c258996404fff7897d58936 400 PRINTS PR00799 Aspartate aminotransferase signature 344 362 3.4E-40 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 ALFP_1478 33c241a18c258996404fff7897d58936 400 SUPERFAMILY SSF53383 1 400 2.07E-117 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_1478 33c241a18c258996404fff7897d58936 400 Pfam PF00155 Aminotransferase class I and II 31 395 4.0E-81 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_1478 33c241a18c258996404fff7897d58936 400 Gene3D G3DSA:3.90.1150.10 8 395 6.6E-168 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_1478 33c241a18c258996404fff7897d58936 400 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 246 259 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 ALFP_1478 33c241a18c258996404fff7897d58936 400 Gene3D G3DSA:3.40.640.10 63 303 6.6E-168 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_1265 1c6762db49b9f31b667c88521f9ae611 433 SUPERFAMILY SSF53649 3 411 1.6E-115 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 ALFP_1265 1c6762db49b9f31b667c88521f9ae611 433 Pfam PF00884 Sulfatase 3 320 2.4E-78 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 ALFP_1265 1c6762db49b9f31b667c88521f9ae611 433 Gene3D G3DSA:3.40.720.10 1 341 2.6E-103 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 ALFP_1265 1c6762db49b9f31b667c88521f9ae611 433 ProSitePatterns PS00149 Sulfatases signature 2. 101 111 - T 12-10-2018 IPR024607 Sulfatase, conserved site ALFP_1265 1c6762db49b9f31b667c88521f9ae611 433 Gene3D G3DSA:3.30.1120.10 344 416 5.5E-9 T 12-10-2018 ALFP_1265 1c6762db49b9f31b667c88521f9ae611 433 ProSitePatterns PS00523 Sulfatases signature 1. 48 60 - T 12-10-2018 IPR024607 Sulfatase, conserved site ALFP_1842 5d9dfa8fe0967e603c48c3c98369fe7c 537 Gene3D G3DSA:1.20.1730.10 81 526 1.0E-44 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily ALFP_1842 5d9dfa8fe0967e603c48c3c98369fe7c 537 Pfam PF00474 Sodium:solute symporter family 95 472 7.3E-20 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 ALFP_1046 88107854e174a2500195fb4cb07f4df2 955 SMART SM00861 601 798 6.1E-58 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain ALFP_1046 88107854e174a2500195fb4cb07f4df2 955 Gene3D G3DSA:3.40.50.970 173 535 1.4E-145 T 12-10-2018 ALFP_1046 88107854e174a2500195fb4cb07f4df2 955 Gene3D G3DSA:3.40.50.11610 735 942 1.2E-169 T 12-10-2018 ALFP_1046 88107854e174a2500195fb4cb07f4df2 955 PIRSF PIRSF000157 1 947 0.0 T 12-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 ALFP_1046 88107854e174a2500195fb4cb07f4df2 955 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 803 945 1.6E-51 T 12-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 ALFP_1046 88107854e174a2500195fb4cb07f4df2 955 Pfam PF00676 Dehydrogenase E1 component 221 524 2.0E-47 T 12-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 ALFP_1046 88107854e174a2500195fb4cb07f4df2 955 SUPERFAMILY SSF52518 126 548 2.36E-89 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_1046 88107854e174a2500195fb4cb07f4df2 955 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 11 49 1.9E-16 T 12-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 ALFP_1046 88107854e174a2500195fb4cb07f4df2 955 Gene3D G3DSA:1.10.287.1150 89 171 1.3E-21 T 12-10-2018 ALFP_1046 88107854e174a2500195fb4cb07f4df2 955 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 13 944 0.0 T 12-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 ALFP_1046 88107854e174a2500195fb4cb07f4df2 955 Gene3D G3DSA:3.40.50.12470 564 814 1.2E-169 T 12-10-2018 ALFP_1046 88107854e174a2500195fb4cb07f4df2 955 Pfam PF02779 Transketolase, pyrimidine binding domain 600 798 7.7E-65 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain ALFP_1046 88107854e174a2500195fb4cb07f4df2 955 SUPERFAMILY SSF52518 584 805 5.59E-48 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_3061 a758f0375f215bc8a87c94b97c2b4d31 289 SUPERFAMILY SSF46785 2 107 8.44E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3061 a758f0375f215bc8a87c94b97c2b4d31 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.6E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3061 a758f0375f215bc8a87c94b97c2b4d31 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.6E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3061 a758f0375f215bc8a87c94b97c2b4d31 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.6E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3061 a758f0375f215bc8a87c94b97c2b4d31 289 Gene3D G3DSA:3.40.190.10 89 270 1.7E-31 T 12-10-2018 ALFP_3061 a758f0375f215bc8a87c94b97c2b4d31 289 SUPERFAMILY SSF53850 87 287 1.15E-32 T 12-10-2018 ALFP_3061 a758f0375f215bc8a87c94b97c2b4d31 289 Gene3D G3DSA:3.40.190.10 159 262 1.7E-31 T 12-10-2018 ALFP_3061 a758f0375f215bc8a87c94b97c2b4d31 289 Gene3D G3DSA:1.10.10.10 1 83 1.6E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3061 a758f0375f215bc8a87c94b97c2b4d31 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.4E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3061 a758f0375f215bc8a87c94b97c2b4d31 289 Pfam PF03466 LysR substrate binding domain 86 286 3.2E-34 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_2320 d3b55fa3fc0c3cc544f8dc372d2a1bcd 440 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 13 440 33.276 T 12-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 ALFP_2320 d3b55fa3fc0c3cc544f8dc372d2a1bcd 440 ProSitePatterns PS00885 EPSP synthase signature 2. 350 368 - T 12-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 ALFP_2320 d3b55fa3fc0c3cc544f8dc372d2a1bcd 440 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 17 439 1.7E-133 T 12-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 ALFP_2320 d3b55fa3fc0c3cc544f8dc372d2a1bcd 440 Gene3D G3DSA:3.65.10.10 247 432 3.1E-132 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 ALFP_2320 d3b55fa3fc0c3cc544f8dc372d2a1bcd 440 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 11 433 5.0E-122 T 12-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 ALFP_2320 d3b55fa3fc0c3cc544f8dc372d2a1bcd 440 Gene3D G3DSA:3.65.10.10 23 246 3.1E-132 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 ALFP_2320 d3b55fa3fc0c3cc544f8dc372d2a1bcd 440 PIRSF PIRSF000505 6 440 1.6E-135 T 12-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 ALFP_2320 d3b55fa3fc0c3cc544f8dc372d2a1bcd 440 ProSitePatterns PS00104 EPSP synthase signature 1. 90 104 - T 12-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 ALFP_2320 d3b55fa3fc0c3cc544f8dc372d2a1bcd 440 SUPERFAMILY SSF55205 6 437 1.44E-118 T 12-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 Hamap MF_01382 Protein translocase subunit SecA [secA]. 4 839 19.92 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 SUPERFAMILY SSF81767 226 368 1.7E-41 T 12-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 SMART SM00957 5 402 1.8E-300 T 12-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 Gene3D G3DSA:3.90.1440.10 228 368 7.4E-173 T 12-10-2018 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 SUPERFAMILY SSF52540 4 415 3.28E-84 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 PRINTS PR00906 SecA protein signature 62 86 1.2E-71 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 PRINTS PR00906 SecA protein signature 339 361 1.2E-71 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 PRINTS PR00906 SecA protein signature 100 114 1.2E-71 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 PRINTS PR00906 SecA protein signature 116 126 1.2E-71 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 PRINTS PR00906 SecA protein signature 169 189 1.2E-71 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 PRINTS PR00906 SecA protein signature 413 426 1.2E-71 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 PRINTS PR00906 SecA protein signature 376 393 1.2E-71 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 ProSitePatterns PS01312 SecA family signature. 500 515 - T 12-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 27 824 0.0 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 SUPERFAMILY SSF52540 416 625 8.57E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 Pfam PF07516 SecA Wing and Scaffold domain 624 836 3.0E-66 T 12-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 Pfam PF01043 SecA preprotein cross-linking domain 232 358 6.3E-35 T 12-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 Gene3D G3DSA:3.40.50.300 417 626 2.7E-86 T 12-10-2018 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 Pfam PF02810 SEC-C motif 888 906 1.1E-10 T 12-10-2018 IPR004027 SEC-C motif ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 Gene3D G3DSA:3.10.450.50 850 907 9.8E-9 T 12-10-2018 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 SMART SM00958 227 358 5.3E-75 T 12-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 Gene3D G3DSA:3.40.50.300 21 415 7.4E-173 T 12-10-2018 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 Gene3D G3DSA:1.10.3060.10 628 840 8.6E-75 T 12-10-2018 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 Pfam PF07517 SecA DEAD-like domain 5 402 1.4E-129 T 12-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 ALFP_0802 d9c9bd4cce13dd16d180c55880223a22 908 SUPERFAMILY SSF81886 628 896 3.4E-80 T 12-10-2018 IPR036266 SecA, Wing/Scaffold superfamily ALFP_0849 ca4b6228e91449d85bc40a8632a7e552 166 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 11 136 4.9E-35 T 12-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 ALFP_0849 ca4b6228e91449d85bc40a8632a7e552 166 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 10 148 1.0E-35 T 12-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 ALFP_0849 ca4b6228e91449d85bc40a8632a7e552 166 Gene3D G3DSA:3.40.50.300 3 161 1.5E-41 T 12-10-2018 ALFP_0849 ca4b6228e91449d85bc40a8632a7e552 166 SUPERFAMILY SSF52540 34 140 4.11E-21 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0468 de52735a1f3f0f307f97d5ab8793c370 165 Pfam PF13279 Thioesterase-like superfamily 23 145 3.6E-9 T 12-10-2018 ALFP_0468 de52735a1f3f0f307f97d5ab8793c370 165 Gene3D G3DSA:3.10.129.10 8 149 1.9E-28 T 12-10-2018 ALFP_0468 de52735a1f3f0f307f97d5ab8793c370 165 SUPERFAMILY SSF54637 13 150 8.31E-30 T 12-10-2018 IPR029069 HotDog domain superfamily ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 8 478 2.7E-162 T 12-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 SUPERFAMILY SSF55424 356 477 6.01E-40 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 SUPERFAMILY SSF51905 5 351 2.59E-63 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 PIRSF PIRSF000350 4 478 1.6E-84 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 360 469 6.7E-36 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 306 328 2.1E-43 T 12-10-2018 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 277 293 2.1E-43 T 12-10-2018 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 189 207 2.1E-43 T 12-10-2018 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 150 168 2.1E-43 T 12-10-2018 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 11 30 2.1E-43 T 12-10-2018 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 Gene3D G3DSA:3.50.50.60 9 348 9.3E-111 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 Gene3D G3DSA:3.50.50.60 168 290 9.3E-111 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 Gene3D G3DSA:3.30.390.30 359 479 4.1E-44 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 10 32 8.5E-77 T 12-10-2018 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 443 463 8.5E-77 T 12-10-2018 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 189 214 8.5E-77 T 12-10-2018 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 49 64 8.5E-77 T 12-10-2018 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 278 292 8.5E-77 T 12-10-2018 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 321 328 8.5E-77 T 12-10-2018 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 421 436 8.5E-77 T 12-10-2018 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 356 377 8.5E-77 T 12-10-2018 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 153 162 8.5E-77 T 12-10-2018 ALFP_1048 46eae9cae81cf794c5ba3f29a1faf918 479 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 9 341 2.4E-71 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ALFP_3588 5d5b34cbe91f2349a3d0cd6ef0fae999 130 SUPERFAMILY SSF55298 2 128 2.67E-37 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_3588 5d5b34cbe91f2349a3d0cd6ef0fae999 130 Gene3D G3DSA:3.30.1330.40 1 129 1.9E-37 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_3588 5d5b34cbe91f2349a3d0cd6ef0fae999 130 Pfam PF01042 Endoribonuclease L-PSP 16 128 2.0E-29 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 ALFP_0494 479a2d46dcd4dab178949e0b65e6003a 259 SMART SM00895 94 225 1.1E-20 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_0494 479a2d46dcd4dab178949e0b65e6003a 259 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 40 4.2E-10 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0494 479a2d46dcd4dab178949e0b65e6003a 259 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 56 4.2E-10 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0494 479a2d46dcd4dab178949e0b65e6003a 259 Gene3D G3DSA:1.10.10.10 1 70 2.5E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0494 479a2d46dcd4dab178949e0b65e6003a 259 Pfam PF07729 FCD domain 94 223 1.7E-24 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_0494 479a2d46dcd4dab178949e0b65e6003a 259 Gene3D G3DSA:1.20.120.530 92 234 3.1E-30 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_0494 479a2d46dcd4dab178949e0b65e6003a 259 SUPERFAMILY SSF48008 92 232 2.09E-28 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_0494 479a2d46dcd4dab178949e0b65e6003a 259 SUPERFAMILY SSF46785 2 70 5.53E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0494 479a2d46dcd4dab178949e0b65e6003a 259 SMART SM00345 7 66 1.6E-21 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0494 479a2d46dcd4dab178949e0b65e6003a 259 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 65 1.5E-19 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0609 20b21b848409f28f68924fe64a1bb722 471 Gene3D G3DSA:3.30.70.2190 215 340 3.5E-31 T 12-10-2018 ALFP_0609 20b21b848409f28f68924fe64a1bb722 471 SUPERFAMILY SSF55103 219 471 4.58E-55 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 ALFP_0609 20b21b848409f28f68924fe64a1bb722 471 Pfam PF01565 FAD binding domain 38 176 6.8E-38 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 ALFP_0609 20b21b848409f28f68924fe64a1bb722 471 Gene3D G3DSA:3.30.70.2740 342 428 3.1E-28 T 12-10-2018 ALFP_0609 20b21b848409f28f68924fe64a1bb722 471 Pfam PF02913 FAD linked oxidases, C-terminal domain 216 468 1.6E-52 T 12-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 ALFP_0609 20b21b848409f28f68924fe64a1bb722 471 Gene3D G3DSA:1.10.45.10 429 469 1.8E-17 T 12-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 ALFP_0609 20b21b848409f28f68924fe64a1bb722 471 Gene3D G3DSA:3.30.465.10 93 214 4.6E-46 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 ALFP_0609 20b21b848409f28f68924fe64a1bb722 471 SUPERFAMILY SSF56176 2 215 8.56E-77 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 ALFP_0609 20b21b848409f28f68924fe64a1bb722 471 Gene3D G3DSA:3.30.43.10 1 91 1.9E-26 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 ALFP_2869 409f7ab98eda53f4cb2d09cffce45497 526 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 279 286 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 ALFP_2869 409f7ab98eda53f4cb2d09cffce45497 526 SUPERFAMILY SSF53720 49 513 2.36E-130 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_2869 409f7ab98eda53f4cb2d09cffce45497 526 Gene3D G3DSA:3.40.309.10 283 477 5.5E-138 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_2869 409f7ab98eda53f4cb2d09cffce45497 526 Gene3D G3DSA:3.40.605.10 50 502 5.5E-138 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_2869 409f7ab98eda53f4cb2d09cffce45497 526 Pfam PF00171 Aldehyde dehydrogenase family 49 505 8.4E-126 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_0296 65faec473914a5fab5c13cca7f00e491 293 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 278 2.7E-33 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_2065 c34234a32386856a673c3b0cc14d220e 358 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 12-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 ALFP_2065 c34234a32386856a673c3b0cc14d220e 358 SMART SM01329 4 353 2.2E-203 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 ALFP_2065 c34234a32386856a673c3b0cc14d220e 358 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 4 353 1.0E-131 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 ALFP_2065 c34234a32386856a673c3b0cc14d220e 358 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 357 50.737 T 12-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 ALFP_2065 c34234a32386856a673c3b0cc14d220e 358 SUPERFAMILY SSF53659 1 357 1.24E-121 T 12-10-2018 ALFP_2065 c34234a32386856a673c3b0cc14d220e 358 Gene3D G3DSA:3.40.718.10 1 357 3.5E-152 T 12-10-2018 ALFP_2065 c34234a32386856a673c3b0cc14d220e 358 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 352 2.5E-144 T 12-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 ALFP_1179 1347b05a8533c39b2954cf00a812c23e 518 Pfam PF01266 FAD dependent oxidoreductase 12 375 3.5E-58 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 ALFP_1179 1347b05a8533c39b2954cf00a812c23e 518 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 422 499 4.0E-15 T 12-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 ALFP_1179 1347b05a8533c39b2954cf00a812c23e 518 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 368 378 - T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 ALFP_1179 1347b05a8533c39b2954cf00a812c23e 518 Gene3D G3DSA:3.50.50.60 12 382 1.2E-129 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1179 1347b05a8533c39b2954cf00a812c23e 518 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 11 23 1.9E-29 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 ALFP_1179 1347b05a8533c39b2954cf00a812c23e 518 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 24 34 1.9E-29 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 ALFP_1179 1347b05a8533c39b2954cf00a812c23e 518 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 363 375 1.9E-29 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 ALFP_1179 1347b05a8533c39b2954cf00a812c23e 518 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 40 52 1.9E-29 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 ALFP_1179 1347b05a8533c39b2954cf00a812c23e 518 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 85 97 1.9E-29 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 ALFP_1179 1347b05a8533c39b2954cf00a812c23e 518 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 329 335 1.9E-29 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 ALFP_1179 1347b05a8533c39b2954cf00a812c23e 518 Gene3D G3DSA:3.30.9.10 89 336 1.2E-129 T 12-10-2018 ALFP_1179 1347b05a8533c39b2954cf00a812c23e 518 Gene3D G3DSA:1.10.8.870 419 515 4.9E-19 T 12-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 ALFP_1179 1347b05a8533c39b2954cf00a812c23e 518 SUPERFAMILY SSF51905 11 337 1.15E-40 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0185 d1385cbe5ae901592af862023a7afb5c 431 PIRSF PIRSF006066 5 431 7.2E-90 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_0185 d1385cbe5ae901592af862023a7afb5c 431 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 159 366 0.001 T 12-10-2018 ALFP_0185 d1385cbe5ae901592af862023a7afb5c 431 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 11 423 9.7E-87 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_0185 d1385cbe5ae901592af862023a7afb5c 431 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 428 8.2E-113 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_2724 e96e34b32678c9b7ac61cdd576901063 221 SUPERFAMILY SSF48498 106 212 5.78E-9 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily ALFP_2724 e96e34b32678c9b7ac61cdd576901063 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 51 74 1.7E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_2724 e96e34b32678c9b7ac61cdd576901063 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 43 1.7E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_2724 e96e34b32678c9b7ac61cdd576901063 221 Pfam PF16859 Bacterial transcriptional repressor C-terminal 105 194 3.8E-8 T 12-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal ALFP_2724 e96e34b32678c9b7ac61cdd576901063 221 Gene3D G3DSA:1.10.357.10 17 214 1.9E-36 T 12-10-2018 ALFP_2724 e96e34b32678c9b7ac61cdd576901063 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 75 5.1E-16 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_2724 e96e34b32678c9b7ac61cdd576901063 221 SUPERFAMILY SSF46689 18 79 1.84E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1957 50b6427de2bd9fda0ecb1eb29343cc17 482 Pfam PF01425 Amidase 31 456 1.9E-83 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_1957 50b6427de2bd9fda0ecb1eb29343cc17 482 SUPERFAMILY SSF75304 5 477 2.22E-105 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_1957 50b6427de2bd9fda0ecb1eb29343cc17 482 Gene3D G3DSA:3.90.1300.10 4 480 2.0E-122 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_0188 2f63f0a781367cd00ab554445b0ab3d9 265 SMART SM00382 34 232 3.4E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0188 2f63f0a781367cd00ab554445b0ab3d9 265 Pfam PF00005 ABC transporter 27 175 7.6E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0188 2f63f0a781367cd00ab554445b0ab3d9 265 Gene3D G3DSA:3.40.50.300 7 264 4.1E-63 T 12-10-2018 ALFP_0188 2f63f0a781367cd00ab554445b0ab3d9 265 SUPERFAMILY SSF52540 8 234 3.34E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0188 2f63f0a781367cd00ab554445b0ab3d9 265 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3154 77429c5419ac57e91657461a392cf65e 347 Gene3D G3DSA:3.90.640.10 191 264 2.5E-131 T 12-10-2018 ALFP_3154 77429c5419ac57e91657461a392cf65e 347 Pfam PF06723 MreB/Mbl protein 11 341 1.5E-147 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 ALFP_3154 77429c5419ac57e91657461a392cf65e 347 SUPERFAMILY SSF53067 9 153 2.11E-37 T 12-10-2018 ALFP_3154 77429c5419ac57e91657461a392cf65e 347 SUPERFAMILY SSF53067 156 337 1.56E-49 T 12-10-2018 ALFP_3154 77429c5419ac57e91657461a392cf65e 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 341 5.7E-154 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 ALFP_3154 77429c5419ac57e91657461a392cf65e 347 Gene3D G3DSA:3.30.420.40 159 322 2.5E-131 T 12-10-2018 ALFP_3154 77429c5419ac57e91657461a392cf65e 347 Gene3D G3DSA:3.30.420.40 13 332 2.5E-131 T 12-10-2018 ALFP_3154 77429c5419ac57e91657461a392cf65e 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 53 71 5.2E-62 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 ALFP_3154 77429c5419ac57e91657461a392cf65e 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 137 156 5.2E-62 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 ALFP_3154 77429c5419ac57e91657461a392cf65e 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 192 212 5.2E-62 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 ALFP_3154 77429c5419ac57e91657461a392cf65e 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 73 96 5.2E-62 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 ALFP_3154 77429c5419ac57e91657461a392cf65e 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 305 331 5.2E-62 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 ALFP_2334 8f77bafa9f47d93650ea5eb5314aab1c 268 SUPERFAMILY SSF56925 132 267 5.89E-6 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel ALFP_2334 8f77bafa9f47d93650ea5eb5314aab1c 268 Gene3D G3DSA:2.40.160.20 100 268 1.0E-5 T 12-10-2018 ALFP_0883 aa4164c61329e27c83bb05f8d79f1b86 167 Pfam PF04542 Sigma-70 region 2 13 74 1.7E-5 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_0883 aa4164c61329e27c83bb05f8d79f1b86 167 SUPERFAMILY SSF88659 89 164 1.33E-14 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like ALFP_0883 aa4164c61329e27c83bb05f8d79f1b86 167 SUPERFAMILY SSF88946 3 91 5.89E-10 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_0883 aa4164c61329e27c83bb05f8d79f1b86 167 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 162 6.5E-19 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 ALFP_0883 aa4164c61329e27c83bb05f8d79f1b86 167 Gene3D G3DSA:1.10.10.10 85 165 2.7E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0883 aa4164c61329e27c83bb05f8d79f1b86 167 Pfam PF08281 Sigma-70, region 4 107 158 9.4E-15 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 81 2.1E-16 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 Gene3D G3DSA:3.40.50.80 204 339 9.1E-33 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 212 231 2.5E-21 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 237 246 2.5E-21 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 304 312 2.5E-21 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 196 205 2.5E-21 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 148 155 2.5E-21 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 144 2.5E-21 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 Pfam PF00970 Oxidoreductase FAD-binding domain 107 201 5.4E-12 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 SUPERFAMILY SSF52343 205 338 4.58E-38 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 132 142 2.0E-7 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 304 312 2.0E-7 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 212 231 2.0E-7 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 148 155 2.0E-7 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 237 246 2.0E-7 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 SUPERFAMILY SSF54292 1 92 5.9E-29 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 SUPERFAMILY SSF63380 102 203 4.12E-21 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 Pfam PF00175 Oxidoreductase NAD-binding domain 213 319 1.1E-21 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 Gene3D G3DSA:3.10.20.30 1 102 3.9E-28 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 Gene3D G3DSA:2.40.30.10 103 203 2.6E-22 T 12-10-2018 ALFP_2248 9a9e6c09c330ddde54bbc305750b4ed8 344 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ALFP_2478 602b95ebefdf774a6e296bc106a4f1c9 353 Gene3D G3DSA:1.20.272.10 222 351 7.9E-29 T 12-10-2018 ALFP_2478 602b95ebefdf774a6e296bc106a4f1c9 353 SUPERFAMILY SSF52540 19 218 1.27E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2478 602b95ebefdf774a6e296bc106a4f1c9 353 SUPERFAMILY SSF48019 220 346 1.7E-27 T 12-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 ALFP_2478 602b95ebefdf774a6e296bc106a4f1c9 353 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 22 345 4.9E-80 T 12-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 ALFP_2478 602b95ebefdf774a6e296bc106a4f1c9 353 Gene3D G3DSA:1.10.8.60 151 221 4.6E-25 T 12-10-2018 ALFP_2478 602b95ebefdf774a6e296bc106a4f1c9 353 Gene3D G3DSA:3.40.50.300 6 148 2.9E-41 T 12-10-2018 ALFP_2478 602b95ebefdf774a6e296bc106a4f1c9 353 Pfam PF06144 DNA polymerase III, delta subunit 25 198 1.6E-25 T 12-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 ALFP_1228 974ba500bf9d213720ecac39a0bd9d3f 336 SUPERFAMILY SSF48029 118 328 5.75E-63 T 12-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical ALFP_1228 974ba500bf9d213720ecac39a0bd9d3f 336 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 11 328 1.8E-109 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 ALFP_1228 974ba500bf9d213720ecac39a0bd9d3f 336 Pfam PF14841 FliG middle domain 120 193 2.3E-24 T 12-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain ALFP_1228 974ba500bf9d213720ecac39a0bd9d3f 336 Pfam PF01706 FliG C-terminal domain 221 327 6.7E-37 T 12-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal ALFP_1228 974ba500bf9d213720ecac39a0bd9d3f 336 Gene3D G3DSA:1.10.220.30 198 336 2.5E-41 T 12-10-2018 ALFP_1228 974ba500bf9d213720ecac39a0bd9d3f 336 Gene3D G3DSA:1.10.220.30 4 88 1.7E-16 T 12-10-2018 ALFP_1228 974ba500bf9d213720ecac39a0bd9d3f 336 PIRSF PIRSF003161 2 336 2.4E-111 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 ALFP_1228 974ba500bf9d213720ecac39a0bd9d3f 336 SUPERFAMILY SSF48029 7 109 2.09E-21 T 12-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical ALFP_1228 974ba500bf9d213720ecac39a0bd9d3f 336 Gene3D G3DSA:1.10.220.30 93 197 6.0E-25 T 12-10-2018 ALFP_1228 974ba500bf9d213720ecac39a0bd9d3f 336 Pfam PF14842 FliG N-terminal domain 10 105 3.2E-27 T 12-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain ALFP_1228 974ba500bf9d213720ecac39a0bd9d3f 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 275 301 4.7E-58 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 ALFP_1228 974ba500bf9d213720ecac39a0bd9d3f 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 36 62 4.7E-58 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 ALFP_1228 974ba500bf9d213720ecac39a0bd9d3f 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 229 249 4.7E-58 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 ALFP_1228 974ba500bf9d213720ecac39a0bd9d3f 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 198 223 4.7E-58 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 ALFP_1228 974ba500bf9d213720ecac39a0bd9d3f 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 7 23 4.7E-58 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 ALFP_1228 974ba500bf9d213720ecac39a0bd9d3f 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 118 141 4.7E-58 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 ALFP_1228 974ba500bf9d213720ecac39a0bd9d3f 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 251 271 4.7E-58 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 ALFP_2993 ee9bc088106ccc6fc03e085e22e2c501 458 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 440 1.1E-110 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 ALFP_2993 ee9bc088106ccc6fc03e085e22e2c501 458 PIRSF PIRSF000774 1 444 5.3E-107 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 ALFP_2993 ee9bc088106ccc6fc03e085e22e2c501 458 Gene3D G3DSA:1.10.10.1330 84 206 7.3E-9 T 12-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily ALFP_2993 ee9bc088106ccc6fc03e085e22e2c501 458 Pfam PF04963 Sigma-54 factor, core binding domain 86 270 4.8E-33 T 12-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 ALFP_2993 ee9bc088106ccc6fc03e085e22e2c501 458 Pfam PF04552 Sigma-54, DNA binding domain 287 440 9.3E-51 T 12-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding ALFP_2993 ee9bc088106ccc6fc03e085e22e2c501 458 PRINTS PR00045 Sigma-54 factor signature 359 370 2.1E-15 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 ALFP_2993 ee9bc088106ccc6fc03e085e22e2c501 458 PRINTS PR00045 Sigma-54 factor signature 417 435 2.1E-15 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 ALFP_2993 ee9bc088106ccc6fc03e085e22e2c501 458 PRINTS PR00045 Sigma-54 factor signature 152 169 2.1E-15 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 ALFP_2993 ee9bc088106ccc6fc03e085e22e2c501 458 PRINTS PR00045 Sigma-54 factor signature 343 355 2.1E-15 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 ALFP_2993 ee9bc088106ccc6fc03e085e22e2c501 458 Gene3D G3DSA:1.10.10.60 384 441 7.6E-16 T 12-10-2018 ALFP_2993 ee9bc088106ccc6fc03e085e22e2c501 458 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 331 350 - T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 ALFP_2993 ee9bc088106ccc6fc03e085e22e2c501 458 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 8 48 1.2E-8 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 ALFP_2519 4657d11deb63ce6713aa8315a5dfc9c9 294 Pfam PF10502 Signal peptidase, peptidase S26 242 281 3.4E-8 T 12-10-2018 IPR019533 Peptidase S26 ALFP_2519 4657d11deb63ce6713aa8315a5dfc9c9 294 Gene3D G3DSA:2.170.230.10 165 243 9.6E-73 T 12-10-2018 ALFP_2519 4657d11deb63ce6713aa8315a5dfc9c9 294 ProSitePatterns PS00760 Signal peptidases I lysine active site. 156 168 - T 12-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 ALFP_2519 4657d11deb63ce6713aa8315a5dfc9c9 294 SUPERFAMILY SSF51306 88 290 1.78E-67 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily ALFP_2519 4657d11deb63ce6713aa8315a5dfc9c9 294 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 76 284 2.1E-51 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 ALFP_2519 4657d11deb63ce6713aa8315a5dfc9c9 294 ProSitePatterns PS00501 Signal peptidases I serine active site. 99 106 - T 12-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 ALFP_2519 4657d11deb63ce6713aa8315a5dfc9c9 294 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 90 106 1.3E-25 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 ALFP_2519 4657d11deb63ce6713aa8315a5dfc9c9 294 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 154 166 1.3E-25 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 ALFP_2519 4657d11deb63ce6713aa8315a5dfc9c9 294 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 244 263 1.3E-25 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 ALFP_2519 4657d11deb63ce6713aa8315a5dfc9c9 294 ProSitePatterns PS00761 Signal peptidases I signature 3. 249 262 - T 12-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 ALFP_2519 4657d11deb63ce6713aa8315a5dfc9c9 294 Pfam PF00717 Peptidase S24-like 96 177 1.3E-20 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C ALFP_2519 4657d11deb63ce6713aa8315a5dfc9c9 294 Gene3D G3DSA:2.10.109.10 88 284 9.6E-73 T 12-10-2018 ALFP_2721 534d8be591aca55e26de7bd04f30159d 359 SUPERFAMILY SSF111369 177 297 1.07E-7 T 12-10-2018 ALFP_2721 534d8be591aca55e26de7bd04f30159d 359 Gene3D G3DSA:2.40.50.100 51 84 1.4E-8 T 12-10-2018 ALFP_2721 534d8be591aca55e26de7bd04f30159d 359 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 50 296 1.4E-12 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain ALFP_2721 534d8be591aca55e26de7bd04f30159d 359 Gene3D G3DSA:2.40.30.170 230 326 5.7E-9 T 12-10-2018 ALFP_2721 534d8be591aca55e26de7bd04f30159d 359 Gene3D G3DSA:1.10.287.470 120 194 5.6E-9 T 12-10-2018 ALFP_2721 534d8be591aca55e26de7bd04f30159d 359 SUPERFAMILY SSF111369 44 109 1.83E-7 T 12-10-2018 ALFP_2721 534d8be591aca55e26de7bd04f30159d 359 Gene3D G3DSA:1.10.287.470 85 113 1.4E-8 T 12-10-2018 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 Gene3D G3DSA:3.30.499.10 373 614 1.0E-99 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 19 914 0.0 T 12-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 Gene3D G3DSA:3.30.499.20 6 372 9.2E-159 T 12-10-2018 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 Pfam PF00694 Aconitase C-terminal domain 716 845 4.3E-40 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 Gene3D G3DSA:1.10.1440.20 615 675 2.3E-18 T 12-10-2018 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 ProSitePatterns PS00450 Aconitase family signature 1. 451 467 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 SUPERFAMILY SSF52016 656 915 8.63E-80 T 12-10-2018 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 SUPERFAMILY SSF53732 4 651 4.58E-227 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 Gene3D G3DSA:3.20.19.10 677 916 5.2E-98 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 Pfam PF00330 Aconitase family (aconitate hydratase) 69 586 6.7E-183 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 PRINTS PR00415 Aconitase family signature 293 306 1.7E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 PRINTS PR00415 Aconitase family signature 372 386 1.7E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 PRINTS PR00415 Aconitase family signature 146 159 1.7E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 PRINTS PR00415 Aconitase family signature 217 232 1.7E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 PRINTS PR00415 Aconitase family signature 170 178 1.7E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 PRINTS PR00415 Aconitase family signature 203 216 1.7E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 PRINTS PR00415 Aconitase family signature 517 530 1.7E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 PRINTS PR00415 Aconitase family signature 455 466 1.7E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 PRINTS PR00415 Aconitase family signature 279 292 1.7E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_3482 2d286936215e96d4a75baae6ce8804ce 917 ProSitePatterns PS01244 Aconitase family signature 2. 517 530 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 ALFP_1605 a599b4fa3808d1aac3d5d63725028dd4 231 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 2 219 6.3E-110 T 12-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 ALFP_1605 a599b4fa3808d1aac3d5d63725028dd4 231 Pfam PF01144 Coenzyme A transferase 8 218 3.4E-64 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 ALFP_1605 a599b4fa3808d1aac3d5d63725028dd4 231 SMART SM00882 6 219 8.0E-74 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 ALFP_1605 a599b4fa3808d1aac3d5d63725028dd4 231 SUPERFAMILY SSF100950 2 222 3.11E-75 T 12-10-2018 IPR037171 NagB/RpiA transferase-like ALFP_1605 a599b4fa3808d1aac3d5d63725028dd4 231 Gene3D G3DSA:3.40.1080.10 1 226 3.4E-77 T 12-10-2018 ALFP_1605 a599b4fa3808d1aac3d5d63725028dd4 231 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 12-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 ALFP_2568 dc5cc9663f2312b40d0055998ec363da 410 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 268 400 2.6E-29 T 12-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 ALFP_2568 dc5cc9663f2312b40d0055998ec363da 410 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 5 233 1.4E-47 T 12-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 ALFP_2568 dc5cc9663f2312b40d0055998ec363da 410 SUPERFAMILY SSF53067 115 231 3.63E-12 T 12-10-2018 ALFP_2568 dc5cc9663f2312b40d0055998ec363da 410 Gene3D G3DSA:3.40.630.30 258 409 5.0E-40 T 12-10-2018 ALFP_2568 dc5cc9663f2312b40d0055998ec363da 410 Pfam PF00583 Acetyltransferase (GNAT) family 293 377 1.1E-15 T 12-10-2018 IPR000182 GNAT domain ALFP_2568 dc5cc9663f2312b40d0055998ec363da 410 Gene3D G3DSA:3.30.420.40 100 202 1.3E-58 T 12-10-2018 ALFP_2568 dc5cc9663f2312b40d0055998ec363da 410 Pfam PF00814 Glycoprotease family 38 145 7.8E-25 T 12-10-2018 IPR000905 Gcp-like domain ALFP_2568 dc5cc9663f2312b40d0055998ec363da 410 SUPERFAMILY SSF55729 258 404 7.38E-33 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_2568 dc5cc9663f2312b40d0055998ec363da 410 SUPERFAMILY SSF53067 5 107 1.29E-22 T 12-10-2018 ALFP_2568 dc5cc9663f2312b40d0055998ec363da 410 Gene3D G3DSA:3.30.420.40 5 236 1.3E-58 T 12-10-2018 ALFP_2283 534c9fa695da115412611e78eb3c1f48 607 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 8 587 2.9E-169 T 12-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 ALFP_2283 534c9fa695da115412611e78eb3c1f48 607 SUPERFAMILY SSF46600 191 242 5.1E-13 T 12-10-2018 IPR036876 UVR domain superfamily ALFP_2283 534c9fa695da115412611e78eb3c1f48 607 Gene3D G3DSA:4.10.860.10 202 241 4.9E-5 T 12-10-2018 ALFP_2283 534c9fa695da115412611e78eb3c1f48 607 Gene3D G3DSA:1.10.150.20 553 607 1.1E-20 T 12-10-2018 ALFP_2283 534c9fa695da115412611e78eb3c1f48 607 SMART SM00465 17 98 4.6E-19 T 12-10-2018 IPR000305 GIY-YIG endonuclease ALFP_2283 534c9fa695da115412611e78eb3c1f48 607 SUPERFAMILY SSF82771 16 100 4.18E-23 T 12-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 ALFP_2283 534c9fa695da115412611e78eb3c1f48 607 SUPERFAMILY SSF47781 522 607 3.81E-18 T 12-10-2018 IPR010994 RuvA domain 2-like ALFP_2283 534c9fa695da115412611e78eb3c1f48 607 Gene3D G3DSA:3.30.420.340 376 540 2.8E-45 T 12-10-2018 IPR038476 UvrC homology region 2 superfamily ALFP_2283 534c9fa695da115412611e78eb3c1f48 607 Gene3D G3DSA:3.40.1440.10 4 102 1.3E-32 T 12-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 ALFP_2283 534c9fa695da115412611e78eb3c1f48 607 Pfam PF02151 UvrB/uvrC motif 204 236 1.3E-8 T 12-10-2018 IPR001943 UVR domain GO:0005515 ALFP_2283 534c9fa695da115412611e78eb3c1f48 607 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 393 540 1.0E-45 T 12-10-2018 IPR001162 UvrC family homology region ALFP_2283 534c9fa695da115412611e78eb3c1f48 607 SMART SM00278 554 573 4.3 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 ALFP_2283 534c9fa695da115412611e78eb3c1f48 607 SMART SM00278 586 605 13.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 ALFP_2283 534c9fa695da115412611e78eb3c1f48 607 Hamap MF_00203 UvrABC system protein C [uvrC]. 4 605 26.587 T 12-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 ALFP_2283 534c9fa695da115412611e78eb3c1f48 607 Pfam PF01541 GIY-YIG catalytic domain 19 93 6.9E-10 T 12-10-2018 IPR000305 GIY-YIG endonuclease ALFP_2283 534c9fa695da115412611e78eb3c1f48 607 Pfam PF14520 Helix-hairpin-helix domain 555 607 1.6E-7 T 12-10-2018 ALFP_3676 e7e5b6d991794214b2cb0e2ba619ba54 628 SMART SM00387 511 623 7.7E-28 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_3676 e7e5b6d991794214b2cb0e2ba619ba54 628 Gene3D G3DSA:1.10.287.130 370 466 1.5E-7 T 12-10-2018 ALFP_3676 e7e5b6d991794214b2cb0e2ba619ba54 628 SMART SM01080 16 291 3.6E-69 T 12-10-2018 IPR007890 CHASE2 ALFP_3676 e7e5b6d991794214b2cb0e2ba619ba54 628 Pfam PF05226 CHASE2 domain 10 282 5.0E-49 T 12-10-2018 IPR007890 CHASE2 ALFP_3676 e7e5b6d991794214b2cb0e2ba619ba54 628 Gene3D G3DSA:3.30.565.10 477 626 3.5E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_3676 e7e5b6d991794214b2cb0e2ba619ba54 628 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 513 619 2.0E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_3676 e7e5b6d991794214b2cb0e2ba619ba54 628 SUPERFAMILY SSF47384 390 467 2.75E-7 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_3676 e7e5b6d991794214b2cb0e2ba619ba54 628 SUPERFAMILY SSF55874 458 619 1.83E-38 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_3676 e7e5b6d991794214b2cb0e2ba619ba54 628 PRINTS PR00344 Bacterial sensor protein C-terminal signature 566 576 1.6E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3676 e7e5b6d991794214b2cb0e2ba619ba54 628 PRINTS PR00344 Bacterial sensor protein C-terminal signature 583 601 1.6E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3676 e7e5b6d991794214b2cb0e2ba619ba54 628 PRINTS PR00344 Bacterial sensor protein C-terminal signature 548 562 1.6E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3676 e7e5b6d991794214b2cb0e2ba619ba54 628 PRINTS PR00344 Bacterial sensor protein C-terminal signature 607 620 1.6E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_0100 749a8fdc5903b2495895e0fbaaf43fda 334 SUPERFAMILY SSF52540 29 263 1.33E-74 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0100 749a8fdc5903b2495895e0fbaaf43fda 334 Gene3D G3DSA:3.40.50.300 27 334 2.5E-102 T 12-10-2018 ALFP_0100 749a8fdc5903b2495895e0fbaaf43fda 334 SMART SM00382 49 241 8.2E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0100 749a8fdc5903b2495895e0fbaaf43fda 334 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0100 749a8fdc5903b2495895e0fbaaf43fda 334 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 243 307 2.7E-18 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ALFP_0100 749a8fdc5903b2495895e0fbaaf43fda 334 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 241 325 1.3E-28 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ALFP_0100 749a8fdc5903b2495895e0fbaaf43fda 334 Pfam PF00005 ABC transporter 41 192 9.4E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2667 903c14f39bd81403f8186f7466129530 453 Gene3D G3DSA:1.20.1250.20 17 453 6.4E-96 T 12-10-2018 ALFP_2667 903c14f39bd81403f8186f7466129530 453 Pfam PF07690 Major Facilitator Superfamily 32 402 5.7E-53 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_2667 903c14f39bd81403f8186f7466129530 453 ProSitePatterns PS00216 Sugar transport proteins signature 1. 78 94 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ALFP_2667 903c14f39bd81403f8186f7466129530 453 SUPERFAMILY SSF103473 11 451 4.05E-94 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2305 1eec3fe1b2df9942a7166c64064172fe 605 SUPERFAMILY SSF56645 38 268 2.75E-57 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 ALFP_2305 1eec3fe1b2df9942a7166c64064172fe 605 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 161 266 1.8E-16 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 ALFP_2305 1eec3fe1b2df9942a7166c64064172fe 605 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 155 7.0E-16 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 ALFP_2305 1eec3fe1b2df9942a7166c64064172fe 605 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 2 33 1.8E-8 T 12-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria ALFP_2305 1eec3fe1b2df9942a7166c64064172fe 605 SUPERFAMILY SSF47203 292 467 3.54E-45 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 ALFP_2305 1eec3fe1b2df9942a7166c64064172fe 605 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 476 593 5.6E-26 T 12-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain ALFP_2305 1eec3fe1b2df9942a7166c64064172fe 605 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 288 451 4.6E-27 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 ALFP_2305 1eec3fe1b2df9942a7166c64064172fe 605 Gene3D G3DSA:1.20.140.10 294 458 1.4E-48 T 12-10-2018 ALFP_2305 1eec3fe1b2df9942a7166c64064172fe 605 Gene3D G3DSA:1.10.540.10 24 157 9.9E-20 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 ALFP_2305 1eec3fe1b2df9942a7166c64064172fe 605 Gene3D G3DSA:2.40.110.10 159 293 2.1E-25 T 12-10-2018 ALFP_1104 d16c02e49000e8682c66d6e7a9ebcfce 456 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 18 453 8.2E-173 T 12-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 ALFP_1104 d16c02e49000e8682c66d6e7a9ebcfce 456 Gene3D G3DSA:1.10.860.10 11 177 7.5E-51 T 12-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal ALFP_1104 d16c02e49000e8682c66d6e7a9ebcfce 456 Pfam PF03796 DnaB-like helicase C terminal domain 198 451 1.2E-112 T 12-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 ALFP_1104 d16c02e49000e8682c66d6e7a9ebcfce 456 SUPERFAMILY SSF52540 196 444 8.74E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1104 d16c02e49000e8682c66d6e7a9ebcfce 456 Gene3D G3DSA:3.40.50.300 178 455 4.8E-102 T 12-10-2018 ALFP_1104 d16c02e49000e8682c66d6e7a9ebcfce 456 Pfam PF00772 DnaB-like helicase N terminal domain 18 119 4.3E-33 T 12-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 ALFP_1104 d16c02e49000e8682c66d6e7a9ebcfce 456 SMART SM00382 215 412 2.2E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1104 d16c02e49000e8682c66d6e7a9ebcfce 456 SUPERFAMILY SSF48024 16 127 1.1E-35 T 12-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 ALFP_2182 726709ef5990bfbdfc5ca3679c149668 214 Pfam PF01478 Type IV leader peptidase family 71 178 7.6E-24 T 12-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 ALFP_2182 726709ef5990bfbdfc5ca3679c149668 214 Gene3D G3DSA:1.20.120.1220 64 189 3.0E-5 T 12-10-2018 ALFP_2182 726709ef5990bfbdfc5ca3679c149668 214 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 147 158 8.0E-23 T 12-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial ALFP_2182 726709ef5990bfbdfc5ca3679c149668 214 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 159 174 8.0E-23 T 12-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial ALFP_2182 726709ef5990bfbdfc5ca3679c149668 214 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 136 146 8.0E-23 T 12-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial ALFP_2182 726709ef5990bfbdfc5ca3679c149668 214 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 79 96 8.0E-23 T 12-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial ALFP_3527 1f4f9cb517952e6d5e20539ad4f2bcd7 874 Gene3D G3DSA:2.60.120.10 689 823 4.8E-18 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_3527 1f4f9cb517952e6d5e20539ad4f2bcd7 874 Pfam PF00999 Sodium/hydrogen exchanger family 13 414 1.2E-58 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 ALFP_3527 1f4f9cb517952e6d5e20539ad4f2bcd7 874 Pfam PF00027 Cyclic nucleotide-binding domain 740 800 6.8E-8 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain ALFP_3527 1f4f9cb517952e6d5e20539ad4f2bcd7 874 SUPERFAMILY SSF51206 694 819 5.63E-18 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like ALFP_0011 a9ee83294a62db803cc094d07f41a721 151 Gene3D G3DSA:2.170.150.70 13 129 8.5E-39 T 12-10-2018 ALFP_0011 a9ee83294a62db803cc094d07f41a721 151 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 36 112 4.2E-10 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 ALFP_0011 a9ee83294a62db803cc094d07f41a721 151 SUPERFAMILY SSF51316 10 132 3.35E-31 T 12-10-2018 IPR011057 Mss4-like superfamily ALFP_0984 43094bb73886d8bee83a0f635993fd25 307 SUPERFAMILY SSF117892 78 214 2.88E-13 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily ALFP_0984 43094bb73886d8bee83a0f635993fd25 307 SMART SM00244 47 213 1.2E-6 T 12-10-2018 IPR001107 Band 7 domain ALFP_0984 43094bb73886d8bee83a0f635993fd25 307 Gene3D G3DSA:3.30.479.30 75 211 3.3E-8 T 12-10-2018 ALFP_0984 43094bb73886d8bee83a0f635993fd25 307 Pfam PF01145 SPFH domain / Band 7 family 51 229 2.3E-30 T 12-10-2018 IPR001107 Band 7 domain ALFP_2218 0e0cd9e76489f2a7bc04f59433355223 295 TIGRFAM TIGR01932 hflC: HflC protein 141 283 2.1E-47 T 12-10-2018 IPR010200 HflC GO:0016021|GO:0052547 ALFP_2218 0e0cd9e76489f2a7bc04f59433355223 295 SUPERFAMILY SSF117892 54 191 5.1E-24 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily ALFP_2218 0e0cd9e76489f2a7bc04f59433355223 295 Pfam PF01145 SPFH domain / Band 7 family 24 200 1.8E-26 T 12-10-2018 IPR001107 Band 7 domain ALFP_2218 0e0cd9e76489f2a7bc04f59433355223 295 PIRSF PIRSF005651 1 293 2.8E-88 T 12-10-2018 IPR010200 HflC GO:0016021|GO:0052547 ALFP_2218 0e0cd9e76489f2a7bc04f59433355223 295 SMART SM00244 20 185 4.9E-24 T 12-10-2018 IPR001107 Band 7 domain ALFP_2218 0e0cd9e76489f2a7bc04f59433355223 295 Gene3D G3DSA:3.30.479.30 51 187 1.9E-17 T 12-10-2018 ALFP_1276 3ceb295941e3d24ecb7276985a439bff 500 ProSitePatterns PS00571 Amidases signature. 199 230 - T 12-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 ALFP_1276 3ceb295941e3d24ecb7276985a439bff 500 Pfam PF01425 Amidase 107 483 2.7E-96 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_1276 3ceb295941e3d24ecb7276985a439bff 500 SUPERFAMILY SSF75304 87 493 1.44E-110 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_1276 3ceb295941e3d24ecb7276985a439bff 500 Gene3D G3DSA:3.90.1300.10 65 493 1.2E-117 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_3640 4ac3225bb150dfe8a1d82d1822e938df 739 Gene3D G3DSA:1.10.540.10 40 153 2.1E-96 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 ALFP_3640 4ac3225bb150dfe8a1d82d1822e938df 739 SUPERFAMILY SSF47203 278 425 6.93E-25 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 ALFP_3640 4ac3225bb150dfe8a1d82d1822e938df 739 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 278 425 2.4E-12 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 ALFP_3640 4ac3225bb150dfe8a1d82d1822e938df 739 Pfam PF09317 Domain of unknown function (DUF1974) 432 720 4.6E-108 T 12-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 ALFP_3640 4ac3225bb150dfe8a1d82d1822e938df 739 Gene3D G3DSA:1.20.140.10 278 425 2.1E-96 T 12-10-2018 ALFP_3640 4ac3225bb150dfe8a1d82d1822e938df 739 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 150 2.0E-20 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 ALFP_3640 4ac3225bb150dfe8a1d82d1822e938df 739 SUPERFAMILY SSF56645 36 273 3.66E-47 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 ALFP_3640 4ac3225bb150dfe8a1d82d1822e938df 739 Gene3D G3DSA:2.40.110.10 154 277 2.1E-96 T 12-10-2018 ALFP_1424 033a544c97e0ea8d425c26024a121879 310 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 294 1.9E-46 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_2833 11a352881ec964dc8254741f890c58f7 561 Gene3D G3DSA:1.10.3720.10 8 280 8.3E-48 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2833 11a352881ec964dc8254741f890c58f7 561 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 373 550 2.2E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_2833 11a352881ec964dc8254741f890c58f7 561 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 275 1.4E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_2833 11a352881ec964dc8254741f890c58f7 561 Gene3D G3DSA:1.10.3720.10 294 548 4.3E-38 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2833 11a352881ec964dc8254741f890c58f7 561 SUPERFAMILY SSF161098 4 276 4.06E-47 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2833 11a352881ec964dc8254741f890c58f7 561 SUPERFAMILY SSF161098 297 548 6.15E-45 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3345 2193bdbe5ab1806fa8518b334ec76283 217 SUPERFAMILY SSF81342 7 213 3.07E-53 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 ALFP_3345 2193bdbe5ab1806fa8518b334ec76283 217 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 10 209 3.0E-57 T 12-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 ALFP_3345 2193bdbe5ab1806fa8518b334ec76283 217 Pfam PF01292 Prokaryotic cytochrome b561 12 189 3.1E-26 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 ALFP_3345 2193bdbe5ab1806fa8518b334ec76283 217 Gene3D G3DSA:1.20.950.20 5 217 8.2E-69 T 12-10-2018 ALFP_1209 dab46694c9b4bb7264d56e066a172824 321 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 181 315 2.8E-21 T 12-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 ALFP_1209 dab46694c9b4bb7264d56e066a172824 321 Gene3D G3DSA:2.10.70.40 208 260 1.4E-48 T 12-10-2018 ALFP_1209 dab46694c9b4bb7264d56e066a172824 321 Gene3D G3DSA:1.10.530.10 174 313 1.4E-48 T 12-10-2018 ALFP_1209 dab46694c9b4bb7264d56e066a172824 321 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 17 314 1.3E-100 T 12-10-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 ALFP_1209 dab46694c9b4bb7264d56e066a172824 321 SMART SM00047 166 321 2.9E-40 T 12-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 ALFP_1209 dab46694c9b4bb7264d56e066a172824 321 Pfam PF10135 Rod binding protein 57 103 5.3E-9 T 12-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal ALFP_1209 dab46694c9b4bb7264d56e066a172824 321 PRINTS PR01002 Flagellar protein FlgJ signature 213 234 1.8E-37 T 12-10-2018 ALFP_1209 dab46694c9b4bb7264d56e066a172824 321 PRINTS PR01002 Flagellar protein FlgJ signature 257 278 1.8E-37 T 12-10-2018 ALFP_1209 dab46694c9b4bb7264d56e066a172824 321 PRINTS PR01002 Flagellar protein FlgJ signature 235 256 1.8E-37 T 12-10-2018 ALFP_1209 dab46694c9b4bb7264d56e066a172824 321 PRINTS PR01002 Flagellar protein FlgJ signature 11 31 1.8E-37 T 12-10-2018 ALFP_1209 dab46694c9b4bb7264d56e066a172824 321 PRINTS PR01002 Flagellar protein FlgJ signature 193 211 1.8E-37 T 12-10-2018 ALFP_1209 dab46694c9b4bb7264d56e066a172824 321 PRINTS PR01002 Flagellar protein FlgJ signature 299 317 1.8E-37 T 12-10-2018 ALFP_1209 dab46694c9b4bb7264d56e066a172824 321 PRINTS PR01002 Flagellar protein FlgJ signature 279 298 1.8E-37 T 12-10-2018 ALFP_2876 cdbff9269943b86cd807aa17df0ad383 305 Gene3D G3DSA:1.10.10.10 5 88 5.2E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2876 cdbff9269943b86cd807aa17df0ad383 305 Gene3D G3DSA:3.40.190.10 94 292 7.0E-63 T 12-10-2018 ALFP_2876 cdbff9269943b86cd807aa17df0ad383 305 Gene3D G3DSA:3.40.190.10 166 266 7.0E-63 T 12-10-2018 ALFP_2876 cdbff9269943b86cd807aa17df0ad383 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 2.2E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2876 cdbff9269943b86cd807aa17df0ad383 305 SUPERFAMILY SSF46785 4 114 9.34E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2876 cdbff9269943b86cd807aa17df0ad383 305 Pfam PF03466 LysR substrate binding domain 91 293 2.5E-46 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_2876 cdbff9269943b86cd807aa17df0ad383 305 SUPERFAMILY SSF53850 93 300 7.14E-47 T 12-10-2018 ALFP_2876 cdbff9269943b86cd807aa17df0ad383 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.7E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2876 cdbff9269943b86cd807aa17df0ad383 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.7E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2876 cdbff9269943b86cd807aa17df0ad383 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.7E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1015 24504a1dda09e085bf5541c8aca5563e 401 Pfam PF00158 Sigma-54 interaction domain 68 227 1.6E-57 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 ALFP_1015 24504a1dda09e085bf5541c8aca5563e 401 SMART SM00382 83 227 1.0E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1015 24504a1dda09e085bf5541c8aca5563e 401 Gene3D G3DSA:1.10.8.60 235 308 9.3E-9 T 12-10-2018 ALFP_1015 24504a1dda09e085bf5541c8aca5563e 401 SUPERFAMILY SSF46689 319 383 5.38E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1015 24504a1dda09e085bf5541c8aca5563e 401 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 365 385 9.2E-11 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_1015 24504a1dda09e085bf5541c8aca5563e 401 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 348 365 9.2E-11 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_1015 24504a1dda09e085bf5541c8aca5563e 401 SUPERFAMILY SSF52540 70 304 1.98E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1015 24504a1dda09e085bf5541c8aca5563e 401 Gene3D G3DSA:1.10.10.60 336 383 1.5E-16 T 12-10-2018 ALFP_1015 24504a1dda09e085bf5541c8aca5563e 401 Gene3D G3DSA:3.40.50.300 52 234 9.3E-55 T 12-10-2018 ALFP_1015 24504a1dda09e085bf5541c8aca5563e 401 Pfam PF02954 Bacterial regulatory protein, Fis family 342 381 4.1E-14 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_2352 bad4e622a086ebcebd1433955d11cd7b 231 SUPERFAMILY SSF53335 15 225 8.44E-25 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_2352 bad4e622a086ebcebd1433955d11cd7b 231 Gene3D G3DSA:3.40.50.150 12 231 2.7E-32 T 12-10-2018 ALFP_2352 bad4e622a086ebcebd1433955d11cd7b 231 Pfam PF13649 Methyltransferase domain 51 144 6.7E-9 T 12-10-2018 ALFP_2768 29482dde451531d189ea49814066f27e 400 Pfam PF00482 Type II secretion system (T2SS), protein F 269 391 9.5E-26 T 12-10-2018 IPR018076 Type II secretion system F domain ALFP_2768 29482dde451531d189ea49814066f27e 400 Pfam PF00482 Type II secretion system (T2SS), protein F 67 189 4.7E-30 T 12-10-2018 IPR018076 Type II secretion system F domain ALFP_2768 29482dde451531d189ea49814066f27e 400 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 399 1.7E-145 T 12-10-2018 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 ALFP_2768 29482dde451531d189ea49814066f27e 400 Gene3D G3DSA:1.20.81.30 253 364 9.4E-23 T 12-10-2018 ALFP_2768 29482dde451531d189ea49814066f27e 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 364 378 3.1E-29 T 12-10-2018 IPR003004 GspF/PilC family ALFP_2768 29482dde451531d189ea49814066f27e 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 62 74 3.1E-29 T 12-10-2018 IPR003004 GspF/PilC family ALFP_2768 29482dde451531d189ea49814066f27e 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 161 189 3.1E-29 T 12-10-2018 IPR003004 GspF/PilC family ALFP_2768 29482dde451531d189ea49814066f27e 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 380 399 3.1E-29 T 12-10-2018 IPR003004 GspF/PilC family ALFP_2768 29482dde451531d189ea49814066f27e 400 Gene3D G3DSA:1.20.81.30 53 168 1.1E-28 T 12-10-2018 ALFP_0758 524c1e49c1a01abf11780384a2a20f04 170 SUPERFAMILY SSF50475 8 163 3.97E-43 T 12-10-2018 ALFP_0758 524c1e49c1a01abf11780384a2a20f04 170 Pfam PF01613 Flavin reductase like domain 18 163 9.6E-32 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 ALFP_0758 524c1e49c1a01abf11780384a2a20f04 170 SMART SM00903 17 165 1.7E-50 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 ALFP_0758 524c1e49c1a01abf11780384a2a20f04 170 Gene3D G3DSA:2.30.110.10 1 166 1.5E-45 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 ALFP_0675 2408d8c57eb6c80f8a71726bdf5cc2e4 401 Pfam PF03453 MoeA N-terminal region (domain I and II) 5 161 1.6E-41 T 12-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 ALFP_0675 2408d8c57eb6c80f8a71726bdf5cc2e4 401 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 247 281 - T 12-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 ALFP_0675 2408d8c57eb6c80f8a71726bdf5cc2e4 401 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 171 307 1.0E-29 T 12-10-2018 IPR001453 MoaB/Mog domain ALFP_0675 2408d8c57eb6c80f8a71726bdf5cc2e4 401 SUPERFAMILY SSF53218 171 316 2.22E-42 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily ALFP_0675 2408d8c57eb6c80f8a71726bdf5cc2e4 401 SMART SM00852 174 312 7.3E-43 T 12-10-2018 IPR001453 MoaB/Mog domain ALFP_0675 2408d8c57eb6c80f8a71726bdf5cc2e4 401 SUPERFAMILY SSF63882 1 169 1.96E-49 T 12-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 ALFP_0675 2408d8c57eb6c80f8a71726bdf5cc2e4 401 SUPERFAMILY SSF63867 323 397 1.96E-14 T 12-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 ALFP_0675 2408d8c57eb6c80f8a71726bdf5cc2e4 401 Pfam PF00994 Probable molybdopterin binding domain 174 311 3.9E-30 T 12-10-2018 IPR001453 MoaB/Mog domain ALFP_0675 2408d8c57eb6c80f8a71726bdf5cc2e4 401 Gene3D G3DSA:2.40.340.10 322 391 7.6E-127 T 12-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 ALFP_0675 2408d8c57eb6c80f8a71726bdf5cc2e4 401 Gene3D G3DSA:2.170.190.11 45 135 7.6E-127 T 12-10-2018 ALFP_0675 2408d8c57eb6c80f8a71726bdf5cc2e4 401 Gene3D G3DSA:3.40.980.10 20 321 7.6E-127 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily ALFP_0675 2408d8c57eb6c80f8a71726bdf5cc2e4 401 Gene3D G3DSA:3.90.105.10 21 168 7.6E-127 T 12-10-2018 ALFP_0675 2408d8c57eb6c80f8a71726bdf5cc2e4 401 Pfam PF03454 MoeA C-terminal region (domain IV) 328 393 2.2E-13 T 12-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 ALFP_1856 9849b7cf4257a8675ac7b48ff6281a70 149 Gene3D G3DSA:2.60.40.790 3 148 1.8E-30 T 12-10-2018 IPR008978 HSP20-like chaperone ALFP_1856 9849b7cf4257a8675ac7b48ff6281a70 149 Pfam PF00011 Hsp20/alpha crystallin family 47 146 5.4E-20 T 12-10-2018 IPR002068 Alpha crystallin/Hsp20 domain ALFP_1856 9849b7cf4257a8675ac7b48ff6281a70 149 SUPERFAMILY SSF49764 20 140 3.84E-32 T 12-10-2018 IPR008978 HSP20-like chaperone ALFP_0498 85515f4afdd62b2bfd1177dd66487fd2 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 59 3.6E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0498 85515f4afdd62b2bfd1177dd66487fd2 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 29 43 3.6E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0498 85515f4afdd62b2bfd1177dd66487fd2 234 SMART SM00866 88 226 8.8E-16 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ALFP_0498 85515f4afdd62b2bfd1177dd66487fd2 234 Pfam PF07702 UTRA domain 89 226 2.5E-24 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ALFP_0498 85515f4afdd62b2bfd1177dd66487fd2 234 SMART SM00345 10 69 1.1E-19 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0498 85515f4afdd62b2bfd1177dd66487fd2 234 Gene3D G3DSA:3.40.1410.10 82 232 1.4E-24 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily ALFP_0498 85515f4afdd62b2bfd1177dd66487fd2 234 SUPERFAMILY SSF46785 2 73 8.17E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0498 85515f4afdd62b2bfd1177dd66487fd2 234 SUPERFAMILY SSF64288 57 231 5.02E-29 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily ALFP_0498 85515f4afdd62b2bfd1177dd66487fd2 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 69 1.7E-20 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0498 85515f4afdd62b2bfd1177dd66487fd2 234 Gene3D G3DSA:1.10.10.10 1 75 1.6E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1257 f4329760b7161a55e3c76b0244f774dd 299 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 44 131 3.8E-24 T 12-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 ALFP_1257 f4329760b7161a55e3c76b0244f774dd 299 SUPERFAMILY SSF54675 19 132 1.53E-31 T 12-10-2018 ALFP_1257 f4329760b7161a55e3c76b0244f774dd 299 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 133 298 3.5E-57 T 12-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 ALFP_1257 f4329760b7161a55e3c76b0244f774dd 299 Gene3D G3DSA:3.90.1170.20 35 298 1.4E-99 T 12-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 ALFP_1257 f4329760b7161a55e3c76b0244f774dd 299 SUPERFAMILY SSF51690 133 298 7.46E-56 T 12-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 ALFP_1257 f4329760b7161a55e3c76b0244f774dd 299 PIRSF PIRSF006250 26 299 2.4E-88 T 12-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 ALFP_1257 f4329760b7161a55e3c76b0244f774dd 299 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 33 298 7.3E-96 T 12-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 ALFP_1257 f4329760b7161a55e3c76b0244f774dd 299 Gene3D G3DSA:3.20.20.70 136 289 1.4E-99 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_2387 8a07131c4dcfacca6669d2c8cebb14ba 302 Gene3D G3DSA:1.10.10.10 2 91 2.3E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2387 8a07131c4dcfacca6669d2c8cebb14ba 302 Gene3D G3DSA:3.40.190.10 165 266 3.3E-55 T 12-10-2018 ALFP_2387 8a07131c4dcfacca6669d2c8cebb14ba 302 SUPERFAMILY SSF46785 1 111 8.33E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2387 8a07131c4dcfacca6669d2c8cebb14ba 302 Gene3D G3DSA:3.40.190.10 92 291 3.3E-55 T 12-10-2018 ALFP_2387 8a07131c4dcfacca6669d2c8cebb14ba 302 SUPERFAMILY SSF53850 88 296 2.9E-40 T 12-10-2018 ALFP_2387 8a07131c4dcfacca6669d2c8cebb14ba 302 Pfam PF03466 LysR substrate binding domain 88 295 1.8E-39 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_2387 8a07131c4dcfacca6669d2c8cebb14ba 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 3.6E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3497 e3649253ad5d5055cb30cd37c1be84c7 311 Gene3D G3DSA:1.10.10.10 12 101 2.9E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3497 e3649253ad5d5055cb30cd37c1be84c7 311 Gene3D G3DSA:3.40.190.10 102 303 6.0E-57 T 12-10-2018 ALFP_3497 e3649253ad5d5055cb30cd37c1be84c7 311 Gene3D G3DSA:3.40.190.10 175 276 6.0E-57 T 12-10-2018 ALFP_3497 e3649253ad5d5055cb30cd37c1be84c7 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 73 8.6E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3497 e3649253ad5d5055cb30cd37c1be84c7 311 Pfam PF03466 LysR substrate binding domain 98 304 2.3E-38 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_3497 e3649253ad5d5055cb30cd37c1be84c7 311 SUPERFAMILY SSF53850 99 308 1.01E-38 T 12-10-2018 ALFP_3497 e3649253ad5d5055cb30cd37c1be84c7 311 SUPERFAMILY SSF46785 3 122 5.9E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0291 ee1bd904ef903d6d716785e0a1f4baf1 546 Gene3D G3DSA:2.30.38.10 361 436 8.6E-30 T 12-10-2018 ALFP_0291 ee1bd904ef903d6d716785e0a1f4baf1 546 Gene3D G3DSA:3.40.50.980 188 360 1.8E-55 T 12-10-2018 ALFP_0291 ee1bd904ef903d6d716785e0a1f4baf1 546 Pfam PF13193 AMP-binding enzyme C-terminal domain 451 523 7.3E-15 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain ALFP_0291 ee1bd904ef903d6d716785e0a1f4baf1 546 SUPERFAMILY SSF56801 8 540 1.2E-137 T 12-10-2018 ALFP_0291 ee1bd904ef903d6d716785e0a1f4baf1 546 Gene3D G3DSA:3.40.50.980 25 183 4.8E-48 T 12-10-2018 ALFP_0291 ee1bd904ef903d6d716785e0a1f4baf1 546 ProSitePatterns PS00455 Putative AMP-binding domain signature. 194 205 - T 12-10-2018 IPR020845 AMP-binding, conserved site ALFP_0291 ee1bd904ef903d6d716785e0a1f4baf1 546 Pfam PF00501 AMP-binding enzyme 35 441 1.0E-83 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_0291 ee1bd904ef903d6d716785e0a1f4baf1 546 TIGRFAM TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase 11 533 9.9E-219 T 12-10-2018 IPR011963 2,3-dihydroxybenzoate-AMP ligase GO:0008668|GO:0019290 ALFP_0291 ee1bd904ef903d6d716785e0a1f4baf1 546 Gene3D G3DSA:3.30.300.310 438 542 3.6E-29 T 12-10-2018 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 Gene3D G3DSA:3.30.2090.10 180 270 5.4E-284 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 Gene3D G3DSA:3.30.70.1440 655 855 5.4E-284 T 12-10-2018 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 Gene3D G3DSA:1.20.1640.10 510 1013 5.4E-284 T 12-10-2018 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 Gene3D G3DSA:1.20.1640.10 11 509 5.4E-284 T 12-10-2018 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 SUPERFAMILY SSF82866 795 1021 1.44E-41 T 12-10-2018 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 Gene3D G3DSA:3.30.70.1430 561 654 5.4E-284 T 12-10-2018 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 Gene3D G3DSA:3.30.70.1320 136 327 5.4E-284 T 12-10-2018 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 PRINTS PR00702 Acriflavin resistance protein family signature 358 379 2.8E-74 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 2.8E-74 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 2.8E-74 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 2.8E-74 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 PRINTS PR00702 Acriflavin resistance protein family signature 546 563 2.8E-74 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 2.8E-74 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 2.8E-74 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 PRINTS PR00702 Acriflavin resistance protein family signature 331 354 2.8E-74 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 PRINTS PR00702 Acriflavin resistance protein family signature 610 624 2.8E-74 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 SUPERFAMILY SSF82693 559 656 8.37E-14 T 12-10-2018 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 SUPERFAMILY SSF82714 184 267 8.11E-14 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 SUPERFAMILY SSF82866 291 491 9.02E-46 T 12-10-2018 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 Gene3D G3DSA:3.30.70.1430 41 804 5.4E-284 T 12-10-2018 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 SUPERFAMILY SSF82693 137 325 9.68E-21 T 12-10-2018 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 Gene3D G3DSA:3.30.2090.10 708 796 5.4E-284 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 Pfam PF00873 AcrB/AcrD/AcrF family 6 1016 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 SUPERFAMILY SSF82714 711 794 1.06E-14 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_3175 6f42f7c463840c7f24998123a63c292b 1034 SUPERFAMILY SSF82693 41 126 3.14E-23 T 12-10-2018 ALFP_2736 c37402b85e345043b2d783b0442045ce 288 Gene3D G3DSA:3.40.1190.20 4 284 2.3E-68 T 12-10-2018 IPR029056 Ribokinase-like ALFP_2736 c37402b85e345043b2d783b0442045ce 288 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 18 279 9.7E-46 T 12-10-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 ALFP_2736 c37402b85e345043b2d783b0442045ce 288 SUPERFAMILY SSF53613 19 276 8.57E-56 T 12-10-2018 IPR029056 Ribokinase-like ALFP_2736 c37402b85e345043b2d783b0442045ce 288 Pfam PF08543 Phosphomethylpyrimidine kinase 69 277 1.8E-20 T 12-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 ALFP_2858 cd71f7e58d1dcf1fb4e51d4b00c368f2 211 Pfam PF01810 LysE type translocator 19 209 6.1E-44 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 ALFP_2858 cd71f7e58d1dcf1fb4e51d4b00c368f2 211 PIRSF PIRSF006324 5 211 2.1E-53 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 ALFP_2010 614345514ae5b807f5746551da7ec9d4 297 Gene3D G3DSA:3.40.190.290 99 296 1.1E-31 T 12-10-2018 ALFP_2010 614345514ae5b807f5746551da7ec9d4 297 SUPERFAMILY SSF53850 98 296 5.61E-32 T 12-10-2018 ALFP_2010 614345514ae5b807f5746551da7ec9d4 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 4.8E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2010 614345514ae5b807f5746551da7ec9d4 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 4.8E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2010 614345514ae5b807f5746551da7ec9d4 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 4.8E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2010 614345514ae5b807f5746551da7ec9d4 297 Pfam PF03466 LysR substrate binding domain 96 291 2.0E-30 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_2010 614345514ae5b807f5746551da7ec9d4 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 70 6.4E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2010 614345514ae5b807f5746551da7ec9d4 297 Gene3D G3DSA:1.10.10.10 11 97 8.8E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2010 614345514ae5b807f5746551da7ec9d4 297 SUPERFAMILY SSF46785 12 116 1.63E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1893 ebb7e1903eb1402f24d68055091e9da6 407 Pfam PF11862 Domain of unknown function (DUF3382) 4 94 3.2E-18 T 12-10-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal ALFP_1893 ebb7e1903eb1402f24d68055091e9da6 407 Pfam PF02653 Branched-chain amino acid transport system / permease component 104 388 2.4E-51 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_1452 a35de84bee46aa4cb14d2509e4f12215 641 Pfam PF00005 ABC transporter 329 460 9.7E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1452 a35de84bee46aa4cb14d2509e4f12215 641 SUPERFAMILY SSF52540 2 226 1.28E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1452 a35de84bee46aa4cb14d2509e4f12215 641 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1452 a35de84bee46aa4cb14d2509e4f12215 641 SUPERFAMILY SSF52540 294 518 2.03E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1452 a35de84bee46aa4cb14d2509e4f12215 641 SMART SM00382 338 505 8.6E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1452 a35de84bee46aa4cb14d2509e4f12215 641 SMART SM00382 26 222 4.1E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1452 a35de84bee46aa4cb14d2509e4f12215 641 Gene3D G3DSA:3.40.50.300 275 539 3.9E-51 T 12-10-2018 ALFP_1452 a35de84bee46aa4cb14d2509e4f12215 641 Pfam PF00005 ABC transporter 17 177 9.4E-21 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1452 a35de84bee46aa4cb14d2509e4f12215 641 Gene3D G3DSA:3.40.50.300 7 274 4.4E-57 T 12-10-2018 ALFP_1452 a35de84bee46aa4cb14d2509e4f12215 641 Pfam PF12848 ABC transporter 216 295 7.3E-25 T 12-10-2018 IPR032781 ABC-transporter extension domain ALFP_1452 a35de84bee46aa4cb14d2509e4f12215 641 ProSitePatterns PS00211 ABC transporters family signature. 432 446 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3035 5051f8413931cd74e23009a620ddc0fc 238 Gene3D G3DSA:1.10.530.10 34 144 2.8E-8 T 12-10-2018 ALFP_3035 5051f8413931cd74e23009a620ddc0fc 238 SUPERFAMILY SSF53955 37 118 1.13E-10 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily ALFP_3035 5051f8413931cd74e23009a620ddc0fc 238 Pfam PF01464 Transglycosylase SLT domain 37 116 7.2E-10 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 ALFP_3116 952d3888ed94788702f39a222a1702df 254 SMART SM00563 68 180 1.5E-29 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 ALFP_3116 952d3888ed94788702f39a222a1702df 254 Pfam PF01553 Acyltransferase 63 177 4.1E-21 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 ALFP_3116 952d3888ed94788702f39a222a1702df 254 SUPERFAMILY SSF69593 13 181 1.57E-26 T 12-10-2018 ALFP_3454 7b0144ec74c6af671372f9e824ae79af 319 Gene3D G3DSA:3.40.190.150 26 306 1.5E-80 T 12-10-2018 ALFP_3454 7b0144ec74c6af671372f9e824ae79af 319 Gene3D G3DSA:3.40.190.10 120 244 1.5E-80 T 12-10-2018 ALFP_3454 7b0144ec74c6af671372f9e824ae79af 319 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 43 314 1.9E-54 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_3454 7b0144ec74c6af671372f9e824ae79af 319 SUPERFAMILY SSF53850 108 281 2.05E-8 T 12-10-2018 ALFP_3454 7b0144ec74c6af671372f9e824ae79af 319 PIRSF PIRSF017082 2 318 1.2E-62 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0621 6454cdb453c744dca7afca7b3f6b76b8 199 SUPERFAMILY SSF50715 1 180 5.58E-48 T 12-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 ALFP_0621 6454cdb453c744dca7afca7b3f6b76b8 199 Pfam PF01386 Ribosomal L25p family 4 90 3.8E-24 T 12-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 ALFP_0621 6454cdb453c744dca7afca7b3f6b76b8 199 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 1 93 1.0E-34 T 12-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 ALFP_0621 6454cdb453c744dca7afca7b3f6b76b8 199 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 1 184 27.933 T 12-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 ALFP_0621 6454cdb453c744dca7afca7b3f6b76b8 199 Gene3D G3DSA:2.170.120.20 96 185 7.4E-20 T 12-10-2018 IPR037121 Ribosomal protein L25, C-terminal ALFP_0621 6454cdb453c744dca7afca7b3f6b76b8 199 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 4 173 1.6E-37 T 12-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 ALFP_0621 6454cdb453c744dca7afca7b3f6b76b8 199 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 99 174 2.9E-21 T 12-10-2018 IPR020057 Ribosomal protein L25, beta domain ALFP_0621 6454cdb453c744dca7afca7b3f6b76b8 199 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 1 93 23.064 T 12-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 ALFP_0621 6454cdb453c744dca7afca7b3f6b76b8 199 Gene3D G3DSA:2.40.240.10 1 93 5.1E-32 T 12-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 ALFP_0587 190a25f602d441fccdff6812c5847c93 473 SUPERFAMILY SSF52935 320 470 6.93E-36 T 12-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 ALFP_0587 190a25f602d441fccdff6812c5847c93 473 Gene3D G3DSA:3.40.1380.20 333 465 9.8E-162 T 12-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 ALFP_0587 190a25f602d441fccdff6812c5847c93 473 Gene3D G3DSA:3.20.20.60 6 332 9.8E-162 T 12-10-2018 ALFP_0587 190a25f602d441fccdff6812c5847c93 473 ProSitePatterns PS00110 Pyruvate kinase active site signature. 212 224 - T 12-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 ALFP_0587 190a25f602d441fccdff6812c5847c93 473 Pfam PF00224 Pyruvate kinase, barrel domain 5 334 5.7E-111 T 12-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 ALFP_0587 190a25f602d441fccdff6812c5847c93 473 SUPERFAMILY SSF51621 3 339 2.65E-93 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 ALFP_0587 190a25f602d441fccdff6812c5847c93 473 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 470 1.9E-147 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 ALFP_0587 190a25f602d441fccdff6812c5847c93 473 Pfam PF02887 Pyruvate kinase, alpha/beta domain 355 467 1.6E-26 T 12-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 ALFP_0587 190a25f602d441fccdff6812c5847c93 473 PRINTS PR01050 Pyruvate kinase family signature 214 240 7.1E-62 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 ALFP_0587 190a25f602d441fccdff6812c5847c93 473 PRINTS PR01050 Pyruvate kinase family signature 241 265 7.1E-62 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 ALFP_0587 190a25f602d441fccdff6812c5847c93 473 PRINTS PR01050 Pyruvate kinase family signature 310 326 7.1E-62 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 ALFP_0587 190a25f602d441fccdff6812c5847c93 473 PRINTS PR01050 Pyruvate kinase family signature 266 290 7.1E-62 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 ALFP_0587 190a25f602d441fccdff6812c5847c93 473 PRINTS PR01050 Pyruvate kinase family signature 62 78 7.1E-62 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 ALFP_0587 190a25f602d441fccdff6812c5847c93 473 PRINTS PR01050 Pyruvate kinase family signature 187 201 7.1E-62 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 ALFP_0587 190a25f602d441fccdff6812c5847c93 473 PRINTS PR01050 Pyruvate kinase family signature 291 309 7.1E-62 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 ALFP_0587 190a25f602d441fccdff6812c5847c93 473 Gene3D G3DSA:2.40.33.10 73 169 9.8E-162 T 12-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 ALFP_0587 190a25f602d441fccdff6812c5847c93 473 SUPERFAMILY SSF50800 73 168 1.6E-25 T 12-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily ALFP_2344 4c926b2aba39615fcb3eb43ae6af2ee2 151 SUPERFAMILY SSF54637 5 150 1.96E-29 T 12-10-2018 IPR029069 HotDog domain superfamily ALFP_2344 4c926b2aba39615fcb3eb43ae6af2ee2 151 Pfam PF01575 MaoC like domain 16 124 4.9E-11 T 12-10-2018 IPR002539 MaoC-like dehydratase domain ALFP_2344 4c926b2aba39615fcb3eb43ae6af2ee2 151 Gene3D G3DSA:3.10.129.10 6 150 1.1E-37 T 12-10-2018 ALFP_0611 16258fc4088589e458bbca8ca9128641 441 TIGRFAM TIGR01266 fum_ac_acetase: fumarylacetoacetase 16 440 3.2E-156 T 12-10-2018 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 ALFP_0611 16258fc4088589e458bbca8ca9128641 441 SUPERFAMILY SSF56529 134 439 5.23E-91 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 ALFP_0611 16258fc4088589e458bbca8ca9128641 441 SUPERFAMILY SSF63433 15 132 1.44E-23 T 12-10-2018 IPR036462 Fumarylacetoacetase, N-terminal domain superfamily GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 ALFP_0611 16258fc4088589e458bbca8ca9128641 441 Gene3D G3DSA:3.90.850.10 130 440 1.4E-115 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 ALFP_0611 16258fc4088589e458bbca8ca9128641 441 Pfam PF09298 Fumarylacetoacetase N-terminal 31 132 3.6E-16 T 12-10-2018 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 ALFP_0611 16258fc4088589e458bbca8ca9128641 441 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 138 436 2.6E-52 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 ALFP_0611 16258fc4088589e458bbca8ca9128641 441 Gene3D G3DSA:2.30.30.230 2 127 5.7E-25 T 12-10-2018 IPR036462 Fumarylacetoacetase, N-terminal domain superfamily GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 ALFP_2369 7578955dab2f4b056b3b256f4929c8e5 408 SUPERFAMILY SSF118215 20 400 3.27E-93 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 ALFP_2369 7578955dab2f4b056b3b256f4929c8e5 408 Pfam PF00375 Sodium:dicarboxylate symporter family 20 399 6.0E-67 T 12-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 ALFP_2369 7578955dab2f4b056b3b256f4929c8e5 408 PRINTS PR00173 Glutamate-aspartate symporter signature 225 244 3.8E-16 T 12-10-2018 ALFP_2369 7578955dab2f4b056b3b256f4929c8e5 408 PRINTS PR00173 Glutamate-aspartate symporter signature 18 38 3.8E-16 T 12-10-2018 ALFP_2369 7578955dab2f4b056b3b256f4929c8e5 408 PRINTS PR00173 Glutamate-aspartate symporter signature 292 318 3.8E-16 T 12-10-2018 ALFP_2369 7578955dab2f4b056b3b256f4929c8e5 408 PRINTS PR00173 Glutamate-aspartate symporter signature 190 209 3.8E-16 T 12-10-2018 ALFP_2369 7578955dab2f4b056b3b256f4929c8e5 408 PRINTS PR00173 Glutamate-aspartate symporter signature 327 346 3.8E-16 T 12-10-2018 ALFP_2369 7578955dab2f4b056b3b256f4929c8e5 408 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 8 408 34.96 T 12-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 ALFP_2369 7578955dab2f4b056b3b256f4929c8e5 408 Gene3D G3DSA:1.10.3860.10 13 405 2.8E-74 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 ALFP_0821 76379eb0f830a21fb23c3effd902b3f4 483 Gene3D G3DSA:3.10.50.40 211 434 3.4E-72 T 12-10-2018 ALFP_0821 76379eb0f830a21fb23c3effd902b3f4 483 SUPERFAMILY SSF54534 327 429 2.68E-30 T 12-10-2018 ALFP_0821 76379eb0f830a21fb23c3effd902b3f4 483 Pfam PF13616 PPIC-type PPIASE domain 332 430 5.0E-27 T 12-10-2018 ALFP_0821 76379eb0f830a21fb23c3effd902b3f4 483 Pfam PF09312 SurA N-terminal domain 49 166 3.0E-29 T 12-10-2018 IPR015391 SurA N-terminal ALFP_0821 76379eb0f830a21fb23c3effd902b3f4 483 Pfam PF00639 PPIC-type PPIASE domain 213 304 7.8E-17 T 12-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 ALFP_0821 76379eb0f830a21fb23c3effd902b3f4 483 SUPERFAMILY SSF54534 208 307 4.32E-23 T 12-10-2018 ALFP_0821 76379eb0f830a21fb23c3effd902b3f4 483 Hamap MF_01183 Chaperone SurA [surA]. 18 475 30.278 T 12-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 ALFP_0821 76379eb0f830a21fb23c3effd902b3f4 483 SUPERFAMILY SSF109998 49 236 2.16E-38 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily ALFP_0821 76379eb0f830a21fb23c3effd902b3f4 483 Gene3D G3DSA:3.10.50.40 332 432 3.4E-72 T 12-10-2018 ALFP_0821 76379eb0f830a21fb23c3effd902b3f4 483 Gene3D G3DSA:1.10.4030.30 45 210 9.5E-42 T 12-10-2018 ALFP_0630 f8a442ec4ba8e258d2ea478bd1c706d7 258 Pfam PF13427 Domain of unknown function (DUF4111) 154 250 2.0E-21 T 12-10-2018 IPR025184 Domain of unknown function DUF4111 ALFP_0630 f8a442ec4ba8e258d2ea478bd1c706d7 258 SUPERFAMILY SSF81301 9 72 1.31E-9 T 12-10-2018 ALFP_0630 f8a442ec4ba8e258d2ea478bd1c706d7 258 PIRSF PIRSF000819 8 257 1.0E-60 T 12-10-2018 IPR024172 Streptomycin 3''-adenylyltransferase GO:0009012|GO:0046677 ALFP_0630 f8a442ec4ba8e258d2ea478bd1c706d7 258 Gene3D G3DSA:3.30.460.10 7 107 2.2E-7 T 12-10-2018 ALFP_0630 f8a442ec4ba8e258d2ea478bd1c706d7 258 Pfam PF01909 Nucleotidyltransferase domain 23 61 1.9E-5 T 12-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 ALFP_0810 4de5f780304892041db365d5fc7bfe6d 725 Gene3D G3DSA:2.60.40.1180 594 642 8.7E-12 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta ALFP_0810 4de5f780304892041db365d5fc7bfe6d 725 Pfam PF01055 Glycosyl hydrolases family 31 211 647 3.3E-66 T 12-10-2018 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 ALFP_0810 4de5f780304892041db365d5fc7bfe6d 725 SUPERFAMILY SSF51011 563 642 4.82E-19 T 12-10-2018 ALFP_0810 4de5f780304892041db365d5fc7bfe6d 725 Gene3D G3DSA:3.20.20.80 216 593 1.0E-60 T 12-10-2018 ALFP_0810 4de5f780304892041db365d5fc7bfe6d 725 Gene3D G3DSA:2.60.40.1760 12 215 3.1E-26 T 12-10-2018 ALFP_0810 4de5f780304892041db365d5fc7bfe6d 725 SUPERFAMILY SSF74650 23 216 5.34E-25 T 12-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 ALFP_0810 4de5f780304892041db365d5fc7bfe6d 725 SUPERFAMILY SSF51445 219 561 1.97E-28 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily ALFP_1337 6acf1b9246b318802d16171d468adb45 335 Pfam PF07729 FCD domain 161 284 1.6E-14 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_1337 6acf1b9246b318802d16171d468adb45 335 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 64 2.3E-11 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1337 6acf1b9246b318802d16171d468adb45 335 Gene3D G3DSA:1.10.10.10 1 71 1.3E-12 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1337 6acf1b9246b318802d16171d468adb45 335 SUPERFAMILY SSF46785 5 66 1.32E-10 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1337 6acf1b9246b318802d16171d468adb45 335 SMART SM00895 161 286 3.0E-11 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_1337 6acf1b9246b318802d16171d468adb45 335 SUPERFAMILY SSF48008 159 290 7.32E-18 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_1337 6acf1b9246b318802d16171d468adb45 335 SMART SM00345 93 149 1.1 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1337 6acf1b9246b318802d16171d468adb45 335 SMART SM00345 12 71 6.5E-4 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1337 6acf1b9246b318802d16171d468adb45 335 Gene3D G3DSA:1.10.10.10 86 150 7.8E-7 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1337 6acf1b9246b318802d16171d468adb45 335 Gene3D G3DSA:1.20.120.530 156 301 6.1E-18 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_3017 b636550ceacb766999e8b221a8538b04 296 SMART SM00062 36 265 0.0013 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_3017 b636550ceacb766999e8b221a8538b04 296 Gene3D G3DSA:3.40.190.10 39 258 3.1E-74 T 12-10-2018 ALFP_3017 b636550ceacb766999e8b221a8538b04 296 TIGRFAM TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein 11 288 3.8E-82 T 12-10-2018 IPR017797 Phosphonate ABC transporter, substrate-binding protein GO:0015716|GO:0043190 ALFP_3017 b636550ceacb766999e8b221a8538b04 296 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 39 278 1.7E-70 T 12-10-2018 ALFP_3017 b636550ceacb766999e8b221a8538b04 296 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 11 255 4.3E-76 T 12-10-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 ALFP_3017 b636550ceacb766999e8b221a8538b04 296 SUPERFAMILY SSF53850 58 247 3.46E-49 T 12-10-2018 ALFP_3017 b636550ceacb766999e8b221a8538b04 296 Gene3D G3DSA:3.40.190.10 123 231 3.1E-74 T 12-10-2018 ALFP_1094 fd2ea2e89d2ad087a9a1e65a1143013e 297 SUPERFAMILY SSF103481 34 130 1.96E-12 T 12-10-2018 ALFP_1094 fd2ea2e89d2ad087a9a1e65a1143013e 297 Pfam PF00892 EamA-like transporter family 137 267 5.3E-11 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_1094 fd2ea2e89d2ad087a9a1e65a1143013e 297 Pfam PF00892 EamA-like transporter family 1 127 8.3E-7 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_1094 fd2ea2e89d2ad087a9a1e65a1143013e 297 SUPERFAMILY SSF103481 181 272 6.15E-12 T 12-10-2018 ALFP_2306 dec8f7120fe6553479bed366fe16b30c 309 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 253 279 - T 12-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 ALFP_2306 dec8f7120fe6553479bed366fe16b30c 309 SUPERFAMILY SSF52467 189 308 1.25E-47 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily ALFP_2306 dec8f7120fe6553479bed366fe16b30c 309 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 272 6.9E-36 T 12-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 ALFP_2306 dec8f7120fe6553479bed366fe16b30c 309 SUPERFAMILY SSF52402 3 186 5.93E-60 T 12-10-2018 ALFP_2306 dec8f7120fe6553479bed366fe16b30c 309 Pfam PF01012 Electron transfer flavoprotein domain 4 170 7.0E-42 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 ALFP_2306 dec8f7120fe6553479bed366fe16b30c 309 PIRSF PIRSF000089 1 309 1.7E-107 T 12-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 ALFP_2306 dec8f7120fe6553479bed366fe16b30c 309 Gene3D G3DSA:3.40.50.1220 184 309 5.0E-57 T 12-10-2018 ALFP_2306 dec8f7120fe6553479bed366fe16b30c 309 Gene3D G3DSA:3.40.50.620 2 183 3.6E-58 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_2306 dec8f7120fe6553479bed366fe16b30c 309 SMART SM00893 3 182 3.5E-59 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 ALFP_2711 be954db364746193eb0dccd5628322ec 445 Pfam PF00155 Aminotransferase class I and II 96 439 1.6E-36 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_2711 be954db364746193eb0dccd5628322ec 445 Gene3D G3DSA:3.40.640.10 129 346 1.9E-74 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2711 be954db364746193eb0dccd5628322ec 445 Gene3D G3DSA:3.90.1150.10 90 438 1.9E-74 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_2711 be954db364746193eb0dccd5628322ec 445 Gene3D G3DSA:1.10.10.10 2 66 4.3E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2711 be954db364746193eb0dccd5628322ec 445 SUPERFAMILY SSF53383 87 439 3.71E-77 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2711 be954db364746193eb0dccd5628322ec 445 SUPERFAMILY SSF46785 4 72 3.77E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2711 be954db364746193eb0dccd5628322ec 445 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 62 4.4E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2711 be954db364746193eb0dccd5628322ec 445 SMART SM00345 3 62 2.9E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0138 02cf6f3bb3283297ff4ed606a086b2d4 379 Gene3D G3DSA:3.40.47.10 113 375 1.6E-139 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_0138 02cf6f3bb3283297ff4ed606a086b2d4 379 Gene3D G3DSA:3.40.47.10 2 262 1.6E-139 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_0138 02cf6f3bb3283297ff4ed606a086b2d4 379 ProSitePatterns PS00099 Thiolases active site. 360 373 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 ALFP_0138 02cf6f3bb3283297ff4ed606a086b2d4 379 Pfam PF02803 Thiolase, C-terminal domain 257 377 8.6E-45 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 ALFP_0138 02cf6f3bb3283297ff4ed606a086b2d4 379 SUPERFAMILY SSF53901 4 255 1.65E-73 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_0138 02cf6f3bb3283297ff4ed606a086b2d4 379 PIRSF PIRSF000429 1 379 3.0E-109 T 12-10-2018 IPR002155 Thiolase GO:0016747 ALFP_0138 02cf6f3bb3283297ff4ed606a086b2d4 379 SUPERFAMILY SSF53901 257 378 1.19E-41 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_0138 02cf6f3bb3283297ff4ed606a086b2d4 379 Pfam PF00108 Thiolase, N-terminal domain 2 249 4.0E-84 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 ALFP_0138 02cf6f3bb3283297ff4ed606a086b2d4 379 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 3 377 5.3E-127 T 12-10-2018 IPR002155 Thiolase GO:0016747 ALFP_0600 1eaa014c677643317519debcb2579f02 285 Gene3D G3DSA:3.40.190.10 61 266 8.9E-61 T 12-10-2018 ALFP_0600 1eaa014c677643317519debcb2579f02 285 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 2 37 1.8E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0600 1eaa014c677643317519debcb2579f02 285 SUPERFAMILY SSF53850 61 270 1.1E-41 T 12-10-2018 ALFP_0600 1eaa014c677643317519debcb2579f02 285 Pfam PF03466 LysR substrate binding domain 66 269 9.1E-25 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0600 1eaa014c677643317519debcb2579f02 285 SUPERFAMILY SSF46785 2 56 1.16E-9 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0600 1eaa014c677643317519debcb2579f02 285 Gene3D G3DSA:3.40.190.10 143 242 8.9E-61 T 12-10-2018 ALFP_0600 1eaa014c677643317519debcb2579f02 285 Gene3D G3DSA:1.10.10.10 1 57 3.2E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2770 296d5356581adbae9462600d9d987eb1 748 Pfam PF03958 Bacterial type II/III secretion system short domain 315 440 1.2E-15 T 12-10-2018 IPR005644 NolW-like ALFP_2770 296d5356581adbae9462600d9d987eb1 748 Pfam PF03958 Bacterial type II/III secretion system short domain 242 309 1.9E-12 T 12-10-2018 IPR005644 NolW-like ALFP_2770 296d5356581adbae9462600d9d987eb1 748 Pfam PF03958 Bacterial type II/III secretion system short domain 178 237 3.2E-11 T 12-10-2018 IPR005644 NolW-like ALFP_2770 296d5356581adbae9462600d9d987eb1 748 Gene3D G3DSA:3.30.1370.120 73 235 1.8E-52 T 12-10-2018 IPR038591 NolW-like superfamily ALFP_2770 296d5356581adbae9462600d9d987eb1 748 Gene3D G3DSA:3.30.1370.120 239 308 4.1E-11 T 12-10-2018 IPR038591 NolW-like superfamily ALFP_2770 296d5356581adbae9462600d9d987eb1 748 PRINTS PR00811 Bacterial general secretion pathway protein D signature 558 568 1.5E-31 T 12-10-2018 IPR001775 GspD/PilQ family ALFP_2770 296d5356581adbae9462600d9d987eb1 748 PRINTS PR00811 Bacterial general secretion pathway protein D signature 680 694 1.5E-31 T 12-10-2018 IPR001775 GspD/PilQ family ALFP_2770 296d5356581adbae9462600d9d987eb1 748 PRINTS PR00811 Bacterial general secretion pathway protein D signature 657 675 1.5E-31 T 12-10-2018 IPR001775 GspD/PilQ family ALFP_2770 296d5356581adbae9462600d9d987eb1 748 PRINTS PR00811 Bacterial general secretion pathway protein D signature 523 547 1.5E-31 T 12-10-2018 IPR001775 GspD/PilQ family ALFP_2770 296d5356581adbae9462600d9d987eb1 748 PRINTS PR00811 Bacterial general secretion pathway protein D signature 440 450 1.5E-31 T 12-10-2018 IPR001775 GspD/PilQ family ALFP_2770 296d5356581adbae9462600d9d987eb1 748 Pfam PF00263 Bacterial type II and III secretion system protein 527 693 5.0E-53 T 12-10-2018 IPR004846 Type II/III secretion system GO:0009306 ALFP_2770 296d5356581adbae9462600d9d987eb1 748 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 81 702 1.5E-192 T 12-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 ALFP_3252 b7f60c925c9c396ed47dde968b9c9b95 522 SUPERFAMILY SSF51261 394 520 2.25E-40 T 12-10-2018 IPR011055 Duplicated hybrid motif ALFP_3252 b7f60c925c9c396ed47dde968b9c9b95 522 Gene3D G3DSA:2.70.70.10 391 521 4.9E-31 T 12-10-2018 IPR011055 Duplicated hybrid motif ALFP_3252 b7f60c925c9c396ed47dde968b9c9b95 522 Pfam PF01551 Peptidase family M23 423 516 2.2E-24 T 12-10-2018 IPR016047 Peptidase M23 ALFP_2622 04682d3f352e44c305a713f4b9270096 411 Gene3D G3DSA:1.20.140.10 243 407 8.3E-29 T 12-10-2018 ALFP_2622 04682d3f352e44c305a713f4b9270096 411 Gene3D G3DSA:2.40.110.10 133 227 3.4E-27 T 12-10-2018 ALFP_2622 04682d3f352e44c305a713f4b9270096 411 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 257 388 5.2E-23 T 12-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain ALFP_2622 04682d3f352e44c305a713f4b9270096 411 PIRSF PIRSF016578 12 410 2.1E-90 T 12-10-2018 ALFP_2622 04682d3f352e44c305a713f4b9270096 411 Gene3D G3DSA:1.10.540.10 15 130 2.8E-19 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 ALFP_2622 04682d3f352e44c305a713f4b9270096 411 SUPERFAMILY SSF47203 257 386 4.0E-9 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 ALFP_2622 04682d3f352e44c305a713f4b9270096 411 SUPERFAMILY SSF56645 26 226 2.23E-27 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 ALFP_2618 3ac2cdcda3b87d2e3cd2f2f8ffca84b7 165 SMART SM00903 17 162 3.0E-36 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 ALFP_2618 3ac2cdcda3b87d2e3cd2f2f8ffca84b7 165 SUPERFAMILY SSF50475 10 161 6.87E-34 T 12-10-2018 ALFP_2618 3ac2cdcda3b87d2e3cd2f2f8ffca84b7 165 Gene3D G3DSA:2.30.110.10 8 165 1.3E-38 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 ALFP_2618 3ac2cdcda3b87d2e3cd2f2f8ffca84b7 165 Pfam PF01613 Flavin reductase like domain 18 163 6.8E-26 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 ALFP_1434 1a6f794f2561d7505ee0a750c13b11ba 394 Pfam PF02441 Flavoprotein 5 176 2.0E-43 T 12-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 ALFP_1434 1a6f794f2561d7505ee0a750c13b11ba 394 SUPERFAMILY SSF102645 175 393 3.92E-73 T 12-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 ALFP_1434 1a6f794f2561d7505ee0a750c13b11ba 394 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 185 365 1.8E-68 T 12-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 ALFP_1434 1a6f794f2561d7505ee0a750c13b11ba 394 Gene3D G3DSA:3.40.50.10300 184 394 5.2E-73 T 12-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 ALFP_1434 1a6f794f2561d7505ee0a750c13b11ba 394 Gene3D G3DSA:3.40.50.1950 1 183 1.8E-57 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 ALFP_1434 1a6f794f2561d7505ee0a750c13b11ba 394 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 2 390 1.6E-132 T 12-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 ALFP_1434 1a6f794f2561d7505ee0a750c13b11ba 394 SUPERFAMILY SSF52507 1 180 1.7E-59 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 ALFP_1902 37e5001d7c2c95039e366dbf76ee887b 393 SUPERFAMILY SSF50952 32 391 6.8E-49 T 12-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 ALFP_1902 37e5001d7c2c95039e366dbf76ee887b 393 Pfam PF07995 Glucose / Sorbosone dehydrogenase 53 388 3.7E-129 T 12-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase ALFP_1902 37e5001d7c2c95039e366dbf76ee887b 393 Gene3D G3DSA:2.120.10.30 39 392 7.6E-129 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like ALFP_0755 59650ad5155d92824e871f89f3d643c0 581 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 52 573 2.3E-119 T 12-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 ALFP_0755 59650ad5155d92824e871f89f3d643c0 581 Pfam PF01019 Gamma-glutamyltranspeptidase 66 576 2.7E-148 T 12-10-2018 ALFP_0755 59650ad5155d92824e871f89f3d643c0 581 Gene3D G3DSA:3.60.20.40 402 581 4.1E-54 T 12-10-2018 ALFP_0755 59650ad5155d92824e871f89f3d643c0 581 Gene3D G3DSA:1.10.246.130 280 401 2.9E-39 T 12-10-2018 ALFP_0755 59650ad5155d92824e871f89f3d643c0 581 SUPERFAMILY SSF56235 42 580 1.0E-157 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal ALFP_0755 59650ad5155d92824e871f89f3d643c0 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 264 280 1.8E-63 T 12-10-2018 ALFP_0755 59650ad5155d92824e871f89f3d643c0 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 294 313 1.8E-63 T 12-10-2018 ALFP_0755 59650ad5155d92824e871f89f3d643c0 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 423 441 1.8E-63 T 12-10-2018 ALFP_0755 59650ad5155d92824e871f89f3d643c0 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 164 183 1.8E-63 T 12-10-2018 ALFP_0755 59650ad5155d92824e871f89f3d643c0 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 484 501 1.8E-63 T 12-10-2018 ALFP_0755 59650ad5155d92824e871f89f3d643c0 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 401 419 1.8E-63 T 12-10-2018 ALFP_0755 59650ad5155d92824e871f89f3d643c0 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 146 164 1.8E-63 T 12-10-2018 ALFP_0755 59650ad5155d92824e871f89f3d643c0 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 460 475 1.8E-63 T 12-10-2018 ALFP_0755 59650ad5155d92824e871f89f3d643c0 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 73 98 1.8E-63 T 12-10-2018 ALFP_0318 d6bdb70fffebd4d52e508028bb11be47 245 Pfam PF04116 Fatty acid hydroxylase superfamily 105 234 2.7E-25 T 12-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 ALFP_0160 4d99ad252fb71ba825a2e2406cb8863b 172 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 31 158 7.1E-28 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_0195 8ad9b0fb593473d68cbeccbf10877fea 440 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 11 431 1.3E-75 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_0195 8ad9b0fb593473d68cbeccbf10877fea 440 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 435 1.2E-83 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_0195 8ad9b0fb593473d68cbeccbf10877fea 440 PIRSF PIRSF006066 5 440 1.3E-80 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 SUPERFAMILY SSF56801 428 970 4.84E-154 T 12-10-2018 ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 SUPERFAMILY SSF53474 1032 1291 2.6E-49 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 Gene3D G3DSA:3.30.300.30 846 951 4.8E-36 T 12-10-2018 ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 Gene3D G3DSA:3.30.559.30 210 439 1.2E-58 T 12-10-2018 ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 Pfam PF00668 Condensation domain 12 427 1.1E-54 T 12-10-2018 IPR001242 Condensation domain ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 485 875 8.0E-130 T 12-10-2018 IPR010071 Amino acid adenylation domain ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 Gene3D G3DSA:3.40.50.12780 450 845 6.4E-133 T 12-10-2018 ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 Pfam PF00550 Phosphopantetheine attachment site 961 1025 3.5E-12 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 SMART SM00823 Phosphopantetheine attachment site 959 1029 9.2E-4 T 12-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 SUPERFAMILY SSF47336 956 1026 1.19E-14 T 12-10-2018 IPR036736 ACP-like superfamily ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 SUPERFAMILY SSF52777 13 178 5.78E-30 T 12-10-2018 ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 Pfam PF00975 Thioesterase domain 1052 1278 7.9E-24 T 12-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 Gene3D G3DSA:3.30.559.10 13 209 1.6E-48 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 SUPERFAMILY SSF52777 193 430 5.0E-35 T 12-10-2018 ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 ProSitePatterns PS00455 Putative AMP-binding domain signature. 596 607 - T 12-10-2018 IPR020845 AMP-binding, conserved site ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 Gene3D G3DSA:3.40.50.1820 952 1294 1.2E-91 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 Pfam PF13193 AMP-binding enzyme C-terminal domain 859 934 3.2E-15 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain ALFP_0289 add9cea1f4f3f8c0cb7f8841f2600c0b 1307 Pfam PF00501 AMP-binding enzyme 467 851 1.1E-94 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_2057 1ab0a53858a5633647888447d52c44a0 334 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 10 319 2.3E-92 T 12-10-2018 IPR016833 Putative sodium bile acid cotransporter ALFP_2057 1ab0a53858a5633647888447d52c44a0 334 Gene3D G3DSA:1.20.1530.20 6 328 6.5E-35 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily ALFP_2057 1ab0a53858a5633647888447d52c44a0 334 PIRSF PIRSF026166 1 334 7.2E-127 T 12-10-2018 IPR016833 Putative sodium bile acid cotransporter ALFP_0338 b0f1556e2276df69e676fd3a9d17ede5 302 SUPERFAMILY SSF53850 92 295 3.26E-39 T 12-10-2018 ALFP_0338 b0f1556e2276df69e676fd3a9d17ede5 302 Pfam PF03466 LysR substrate binding domain 91 290 6.0E-39 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0338 b0f1556e2276df69e676fd3a9d17ede5 302 SUPERFAMILY SSF46785 1 111 1.01E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0338 b0f1556e2276df69e676fd3a9d17ede5 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.6E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0338 b0f1556e2276df69e676fd3a9d17ede5 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 9.3E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0338 b0f1556e2276df69e676fd3a9d17ede5 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 9.3E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0338 b0f1556e2276df69e676fd3a9d17ede5 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 9.3E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0338 b0f1556e2276df69e676fd3a9d17ede5 302 Gene3D G3DSA:3.40.190.290 92 297 4.2E-38 T 12-10-2018 ALFP_0338 b0f1556e2276df69e676fd3a9d17ede5 302 Gene3D G3DSA:1.10.10.10 2 85 6.8E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1308 f64c4653579f51c43d2b59aab3f39295 362 SUPERFAMILY SSF46626 103 216 4.4E-23 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1308 f64c4653579f51c43d2b59aab3f39295 362 SUPERFAMILY SSF46626 230 325 4.94E-21 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1308 f64c4653579f51c43d2b59aab3f39295 362 Gene3D G3DSA:1.10.760.10 224 341 1.4E-41 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1308 f64c4653579f51c43d2b59aab3f39295 362 Pfam PF00034 Cytochrome c 237 319 2.2E-10 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_1308 f64c4653579f51c43d2b59aab3f39295 362 Gene3D G3DSA:1.10.760.10 88 223 5.7E-37 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_3186 8a0763794645cb169799d195e5f12003 255 Pfam PF13560 Helix-turn-helix domain 1 79 2.6E-16 T 12-10-2018 ALFP_3186 8a0763794645cb169799d195e5f12003 255 Gene3D G3DSA:3.30.450.180 99 248 3.9E-13 T 12-10-2018 ALFP_3186 8a0763794645cb169799d195e5f12003 255 SUPERFAMILY SSF47413 23 72 1.93E-5 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_3186 8a0763794645cb169799d195e5f12003 255 SMART SM00530 4 76 1.1E-4 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_3186 8a0763794645cb169799d195e5f12003 255 Gene3D G3DSA:1.10.260.40 1 76 3.0E-6 T 12-10-2018 ALFP_0431 017948f39a0c98e32724644dacb53dd2 409 Gene3D G3DSA:3.40.50.10540 11 395 8.8E-119 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_0431 017948f39a0c98e32724644dacb53dd2 409 SUPERFAMILY SSF89796 7 398 1.44E-124 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_0431 017948f39a0c98e32724644dacb53dd2 409 Pfam PF02515 CoA-transferase family III 12 379 1.0E-111 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 ALFP_0431 017948f39a0c98e32724644dacb53dd2 409 Gene3D G3DSA:3.30.1540.10 239 330 8.8E-119 T 12-10-2018 ALFP_2677 2555dc38793d4b4facf482707e544f61 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 1.4E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_2677 2555dc38793d4b4facf482707e544f61 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.4E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_2677 2555dc38793d4b4facf482707e544f61 199 SUPERFAMILY SSF46689 9 78 5.99E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2677 2555dc38793d4b4facf482707e544f61 199 Gene3D G3DSA:1.10.357.10 1 193 1.7E-31 T 12-10-2018 ALFP_2677 2555dc38793d4b4facf482707e544f61 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 64 1.8E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1246 5eeb775ce6f0dede92619053b088c995 662 Pfam PF00092 von Willebrand factor type A domain 236 411 7.7E-6 T 12-10-2018 IPR002035 von Willebrand factor, type A ALFP_1246 5eeb775ce6f0dede92619053b088c995 662 Gene3D G3DSA:3.40.50.410 236 447 1.8E-10 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily ALFP_1246 5eeb775ce6f0dede92619053b088c995 662 SUPERFAMILY SSF53300 235 441 2.7E-15 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily ALFP_2063 c3ac936a1cfaa2f0ac11ab00b0800304 468 Gene3D G3DSA:3.10.350.10 161 242 3.1E-6 T 12-10-2018 IPR036779 LysM domain superfamily ALFP_2063 c3ac936a1cfaa2f0ac11ab00b0800304 468 TIGRFAM TIGR03505 FimV_core: FimV N-terminal domain 179 250 7.9E-22 T 12-10-2018 IPR020012 Motility protein FimV, N-terminal ALFP_2063 c3ac936a1cfaa2f0ac11ab00b0800304 468 Pfam PF01476 LysM domain 174 227 7.3E-5 T 12-10-2018 IPR018392 LysM domain ALFP_2513 ad36dbd9762aa63fe80899b65ba2be19 309 Gene3D G3DSA:2.160.10.10 190 301 2.0E-29 T 12-10-2018 ALFP_2513 ad36dbd9762aa63fe80899b65ba2be19 309 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 249 283 4.3E-6 T 12-10-2018 IPR001451 Hexapeptide repeat ALFP_2513 ad36dbd9762aa63fe80899b65ba2be19 309 Pfam PF06426 Serine acetyltransferase, N-terminal 81 158 2.8E-4 T 12-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 ALFP_2513 ad36dbd9762aa63fe80899b65ba2be19 309 Gene3D G3DSA:1.10.3130.10 33 189 2.9E-46 T 12-10-2018 ALFP_2513 ad36dbd9762aa63fe80899b65ba2be19 309 PIRSF PIRSF000441 122 296 5.3E-51 T 12-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 ALFP_2513 ad36dbd9762aa63fe80899b65ba2be19 309 SUPERFAMILY SSF51161 112 292 1.52E-44 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily ALFP_1505 f42d78c4c485fcb258c9f0cc564763ce 197 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 28 183 1.0E-65 T 12-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 ALFP_1505 f42d78c4c485fcb258c9f0cc564763ce 197 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 108 182 5.0E-25 T 12-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 ALFP_1505 f42d78c4c485fcb258c9f0cc564763ce 197 Hamap MF_00105 Transcription elongation factor GreA [greA]. 28 181 27.16 T 12-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 ALFP_1505 f42d78c4c485fcb258c9f0cc564763ce 197 SUPERFAMILY SSF46557 29 103 4.05E-26 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 ALFP_1505 f42d78c4c485fcb258c9f0cc564763ce 197 Gene3D G3DSA:3.10.50.30 106 185 8.0E-27 T 12-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 ALFP_1505 f42d78c4c485fcb258c9f0cc564763ce 197 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 43 74 - T 12-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 ALFP_1505 f42d78c4c485fcb258c9f0cc564763ce 197 SUPERFAMILY SSF54534 107 182 1.7E-20 T 12-10-2018 ALFP_1505 f42d78c4c485fcb258c9f0cc564763ce 197 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 146 162 - T 12-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 ALFP_1505 f42d78c4c485fcb258c9f0cc564763ce 197 Hamap MF_00930 Transcription elongation factor GreB [greB]. 27 183 50.326 T 12-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 ALFP_1505 f42d78c4c485fcb258c9f0cc564763ce 197 Pfam PF03449 Transcription elongation factor, N-terminal 30 100 1.1E-23 T 12-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 ALFP_1505 f42d78c4c485fcb258c9f0cc564763ce 197 Gene3D G3DSA:1.10.287.180 28 102 2.6E-26 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 ALFP_1505 f42d78c4c485fcb258c9f0cc564763ce 197 PIRSF PIRSF006092 26 184 7.7E-43 T 12-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 ALFP_3174 a3daba39793c7e4da5ff647637c86988 485 Gene3D G3DSA:1.20.1600.10 57 462 2.1E-130 T 12-10-2018 ALFP_3174 a3daba39793c7e4da5ff647637c86988 485 Pfam PF02321 Outer membrane efflux protein 277 459 7.9E-25 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_3174 a3daba39793c7e4da5ff647637c86988 485 Pfam PF02321 Outer membrane efflux protein 67 252 1.8E-23 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_3174 a3daba39793c7e4da5ff647637c86988 485 SUPERFAMILY SSF56954 2 463 6.8E-106 T 12-10-2018 ALFP_3174 a3daba39793c7e4da5ff647637c86988 485 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 12 461 7.3E-117 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 ALFP_3174 a3daba39793c7e4da5ff647637c86988 485 Gene3D G3DSA:2.20.200.10 104 350 2.1E-130 T 12-10-2018 ALFP_3484 b70347322df1995f62d419a9be840079 282 SUPERFAMILY SSF53335 14 250 5.84E-29 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_3484 b70347322df1995f62d419a9be840079 282 Pfam PF13649 Methyltransferase domain 100 184 1.5E-9 T 12-10-2018 ALFP_3484 b70347322df1995f62d419a9be840079 282 Gene3D G3DSA:3.40.50.150 11 282 6.9E-63 T 12-10-2018 ALFP_3484 b70347322df1995f62d419a9be840079 282 PIRSF PIRSF018249 6 282 1.9E-70 T 12-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 ALFP_0270 c9e772a50c47a8e03f450b9000a7cfbd 266 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 12-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 ALFP_0270 c9e772a50c47a8e03f450b9000a7cfbd 266 Gene3D G3DSA:3.20.20.70 1 265 3.4E-103 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0270 c9e772a50c47a8e03f450b9000a7cfbd 266 SUPERFAMILY SSF51366 12 262 5.18E-90 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 ALFP_0270 c9e772a50c47a8e03f450b9000a7cfbd 266 Pfam PF00218 Indole-3-glycerol phosphate synthase 5 259 2.8E-95 T 12-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 ALFP_0270 c9e772a50c47a8e03f450b9000a7cfbd 266 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 3 262 35.91 T 12-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 ALFP_2011 77cae45d5c7c5fe3cce6ffaea6a3f1da 755 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 149 587 3.9E-143 T 12-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 ALFP_2011 77cae45d5c7c5fe3cce6ffaea6a3f1da 755 Gene3D G3DSA:3.90.100.10 634 755 1.4E-34 T 12-10-2018 ALFP_2011 77cae45d5c7c5fe3cce6ffaea6a3f1da 755 Gene3D G3DSA:3.90.1150.10 459 633 3.7E-66 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_2011 77cae45d5c7c5fe3cce6ffaea6a3f1da 755 SUPERFAMILY SSF53383 149 607 4.29E-110 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2011 77cae45d5c7c5fe3cce6ffaea6a3f1da 755 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 20 143 4.9E-36 T 12-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 ALFP_2011 77cae45d5c7c5fe3cce6ffaea6a3f1da 755 PIRSF PIRSF009393 1 755 3.3E-265 T 12-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 ALFP_2011 77cae45d5c7c5fe3cce6ffaea6a3f1da 755 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 392 406 - T 12-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 ALFP_2011 77cae45d5c7c5fe3cce6ffaea6a3f1da 755 SUPERFAMILY SSF55904 609 754 8.24E-41 T 12-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 ALFP_2011 77cae45d5c7c5fe3cce6ffaea6a3f1da 755 Gene3D G3DSA:3.40.50.2300 5 147 8.0E-21 T 12-10-2018 ALFP_2011 77cae45d5c7c5fe3cce6ffaea6a3f1da 755 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 614 739 3.5E-42 T 12-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 ALFP_2011 77cae45d5c7c5fe3cce6ffaea6a3f1da 755 Gene3D G3DSA:3.40.640.10 149 457 2.5E-93 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2826 24c5b74edaa15874f99efb647ce8e69e 159 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 1 142 25.787 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 ALFP_2826 24c5b74edaa15874f99efb647ce8e69e 159 SUPERFAMILY SSF55068 1 149 1.19E-58 T 12-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 ALFP_2826 24c5b74edaa15874f99efb647ce8e69e 159 Pfam PF01625 Peptide methionine sulfoxide reductase 1 138 1.1E-50 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 ALFP_2826 24c5b74edaa15874f99efb647ce8e69e 159 Gene3D G3DSA:3.30.1060.10 1 147 2.7E-56 T 12-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 ALFP_2826 24c5b74edaa15874f99efb647ce8e69e 159 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 2 137 3.1E-47 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 ALFP_2610 2e9dda818de5166760a918f834f4a4ab 437 SMART SM00382 46 162 2.0E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2610 2e9dda818de5166760a918f834f4a4ab 437 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 50 158 3.7E-15 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 ALFP_2610 2e9dda818de5166760a918f834f4a4ab 437 Gene3D G3DSA:3.40.50.300 4 161 7.1E-46 T 12-10-2018 ALFP_2610 2e9dda818de5166760a918f834f4a4ab 437 Pfam PF16193 AAA C-terminal domain 183 258 4.4E-23 T 12-10-2018 IPR032423 AAA C-terminal domain ALFP_2610 2e9dda818de5166760a918f834f4a4ab 437 Pfam PF12002 MgsA AAA+ ATPase C terminal 259 425 5.4E-65 T 12-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal ALFP_2610 2e9dda818de5166760a918f834f4a4ab 437 SUPERFAMILY SSF48019 243 425 2.47E-72 T 12-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 ALFP_2610 2e9dda818de5166760a918f834f4a4ab 437 SUPERFAMILY SSF52540 8 227 2.74E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2610 2e9dda818de5166760a918f834f4a4ab 437 Gene3D G3DSA:1.20.272.10 233 336 1.9E-40 T 12-10-2018 ALFP_2610 2e9dda818de5166760a918f834f4a4ab 437 Gene3D G3DSA:1.10.8.60 162 231 1.0E-5 T 12-10-2018 ALFP_2610 2e9dda818de5166760a918f834f4a4ab 437 Gene3D G3DSA:1.10.3710.10 337 437 4.3E-34 T 12-10-2018 ALFP_0093 e43399def4430bc84efaafc21202bc57 205 Pfam PF01613 Flavin reductase like domain 30 165 5.3E-13 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 ALFP_0093 e43399def4430bc84efaafc21202bc57 205 Gene3D G3DSA:2.30.110.10 12 205 4.9E-47 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 ALFP_0093 e43399def4430bc84efaafc21202bc57 205 SUPERFAMILY SSF50475 4 188 1.96E-40 T 12-10-2018 ALFP_0093 e43399def4430bc84efaafc21202bc57 205 SMART SM00903 25 174 2.6E-6 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 ALFP_1378 58779f00b7b2910dc56bdcdafe2d9d4c 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 1.6E-14 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 ALFP_1378 58779f00b7b2910dc56bdcdafe2d9d4c 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 1.6E-14 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 ALFP_1378 58779f00b7b2910dc56bdcdafe2d9d4c 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 1.6E-14 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 ALFP_1378 58779f00b7b2910dc56bdcdafe2d9d4c 153 SUPERFAMILY SSF46785 1 60 4.01E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1378 58779f00b7b2910dc56bdcdafe2d9d4c 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 49 2.0E-19 T 12-10-2018 ALFP_1378 58779f00b7b2910dc56bdcdafe2d9d4c 153 SMART SM00344 2 111 5.4E-44 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 ALFP_1378 58779f00b7b2910dc56bdcdafe2d9d4c 153 Pfam PF01037 Lrp/AsnC ligand binding domain 68 141 1.0E-19 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain ALFP_1378 58779f00b7b2910dc56bdcdafe2d9d4c 153 Gene3D G3DSA:3.30.70.920 55 138 1.5E-23 T 12-10-2018 ALFP_1378 58779f00b7b2910dc56bdcdafe2d9d4c 153 Gene3D G3DSA:1.10.10.10 3 54 5.6E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1378 58779f00b7b2910dc56bdcdafe2d9d4c 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 20 46 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site ALFP_1378 58779f00b7b2910dc56bdcdafe2d9d4c 153 SUPERFAMILY SSF54909 63 150 3.62E-19 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel ALFP_1751 e426fa95a9d3902ee3577bb73392a601 410 Gene3D G3DSA:2.40.30.10 151 261 1.9E-36 T 12-10-2018 ALFP_1751 e426fa95a9d3902ee3577bb73392a601 410 SUPERFAMILY SSF63380 150 261 1.33E-26 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_1751 e426fa95a9d3902ee3577bb73392a601 410 Pfam PF00970 Oxidoreductase FAD-binding domain 158 261 8.0E-11 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 ALFP_1751 e426fa95a9d3902ee3577bb73392a601 410 Gene3D G3DSA:3.40.50.80 262 404 1.5E-30 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_1751 e426fa95a9d3902ee3577bb73392a601 410 PRINTS PR00406 Cytochrome B5 reductase signature 366 374 8.5E-5 T 12-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 ALFP_1751 e426fa95a9d3902ee3577bb73392a601 410 PRINTS PR00406 Cytochrome B5 reductase signature 248 262 8.5E-5 T 12-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 ALFP_1751 e426fa95a9d3902ee3577bb73392a601 410 PRINTS PR00406 Cytochrome B5 reductase signature 273 292 8.5E-5 T 12-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 ALFP_1751 e426fa95a9d3902ee3577bb73392a601 410 Gene3D G3DSA:1.10.490.10 1 144 2.6E-57 T 12-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 ALFP_1751 e426fa95a9d3902ee3577bb73392a601 410 Hamap MF_01252 Flavohemoprotein [hmp]. 1 404 52.828 T 12-10-2018 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 ALFP_1751 e426fa95a9d3902ee3577bb73392a601 410 Pfam PF00175 Oxidoreductase NAD-binding domain 274 378 8.1E-15 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ALFP_1751 e426fa95a9d3902ee3577bb73392a601 410 SUPERFAMILY SSF46458 1 147 5.65E-40 T 12-10-2018 IPR009050 Globin-like superfamily ALFP_1751 e426fa95a9d3902ee3577bb73392a601 410 Pfam PF00042 Globin 8 102 1.6E-10 T 12-10-2018 IPR000971 Globin GO:0020037 ALFP_1751 e426fa95a9d3902ee3577bb73392a601 410 SUPERFAMILY SSF52343 267 400 1.28E-30 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_3341 0b178dbefe94656ff2318c3d1d7f0328 224 SUPERFAMILY SSF46458 11 119 5.04E-23 T 12-10-2018 IPR009050 Globin-like superfamily ALFP_3341 0b178dbefe94656ff2318c3d1d7f0328 224 Gene3D G3DSA:1.10.490.10 7 125 7.6E-35 T 12-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 ALFP_3341 0b178dbefe94656ff2318c3d1d7f0328 224 Gene3D G3DSA:2.60.120.10 130 224 4.0E-24 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_3341 0b178dbefe94656ff2318c3d1d7f0328 224 Pfam PF01152 Bacterial-like globin 12 107 8.8E-7 T 12-10-2018 IPR001486 Truncated hemoglobin GO:0019825 ALFP_3341 0b178dbefe94656ff2318c3d1d7f0328 224 Pfam PF09313 Domain of unknown function (DUF1971) 143 209 7.4E-18 T 12-10-2018 IPR015392 Domain of unknown function DUF1971 ALFP_3341 0b178dbefe94656ff2318c3d1d7f0328 224 SUPERFAMILY SSF51197 134 222 5.08E-22 T 12-10-2018 ALFP_3304 9db971718e7cf3b018be4aee58b1c1be 351 Pfam PF01171 PP-loop family 56 219 8.8E-16 T 12-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 ALFP_3304 9db971718e7cf3b018be4aee58b1c1be 351 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 8 286 56.558 T 12-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 ALFP_3304 9db971718e7cf3b018be4aee58b1c1be 351 SUPERFAMILY SSF52402 32 251 1.76E-56 T 12-10-2018 ALFP_3304 9db971718e7cf3b018be4aee58b1c1be 351 Gene3D G3DSA:3.40.50.620 14 279 4.5E-48 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_2900 0769c1984b9cd9c5802027da6eea18be 209 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 122 128 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 ALFP_2900 0769c1984b9cd9c5802027da6eea18be 209 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 4 180 4.0E-36 T 12-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 ALFP_2900 0769c1984b9cd9c5802027da6eea18be 209 PIRSF PIRSF004553 5 184 1.6E-36 T 12-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 ALFP_2900 0769c1984b9cd9c5802027da6eea18be 209 Pfam PF03602 Conserved hypothetical protein 95 6 180 4.0E-44 T 12-10-2018 ALFP_2900 0769c1984b9cd9c5802027da6eea18be 209 SUPERFAMILY SSF53335 6 178 8.37E-40 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_2900 0769c1984b9cd9c5802027da6eea18be 209 Gene3D G3DSA:3.40.50.150 1 192 2.6E-49 T 12-10-2018 ALFP_3181 c7cf9869873c049445116af54077ea8b 91 Gene3D G3DSA:1.10.10.10 11 72 6.7E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3181 c7cf9869873c049445116af54077ea8b 91 SUPERFAMILY SSF46894 7 71 1.05E-19 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ALFP_3181 c7cf9869873c049445116af54077ea8b 91 SMART SM00421 13 70 8.0E-22 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3181 c7cf9869873c049445116af54077ea8b 91 Pfam PF00196 Bacterial regulatory proteins, luxR family 14 69 2.1E-22 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3181 c7cf9869873c049445116af54077ea8b 91 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 30 46 9.8E-14 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3181 c7cf9869873c049445116af54077ea8b 91 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 46 58 9.8E-14 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3181 c7cf9869873c049445116af54077ea8b 91 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 16 30 9.8E-14 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3181 c7cf9869873c049445116af54077ea8b 91 ProSitePatterns PS00622 LuxR-type HTH domain signature. 30 57 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_0136 af7afc4a4c76158df98f8a8b789b8601 670 SMART SM01209 114 293 0.0048 T 12-10-2018 ALFP_0136 af7afc4a4c76158df98f8a8b789b8601 670 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ALFP_0136 af7afc4a4c76158df98f8a8b789b8601 670 SMART SM00878 336 447 4.8E-55 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 ALFP_0136 af7afc4a4c76158df98f8a8b789b8601 670 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 625 642 - T 12-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 ALFP_0136 af7afc4a4c76158df98f8a8b789b8601 670 SUPERFAMILY SSF51230 596 669 6.28E-21 T 12-10-2018 IPR011053 Single hybrid motif ALFP_0136 af7afc4a4c76158df98f8a8b789b8601 670 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 110 2.4E-43 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 ALFP_0136 af7afc4a4c76158df98f8a8b789b8601 670 Pfam PF02785 Biotin carboxylase C-terminal domain 336 446 2.3E-36 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 ALFP_0136 af7afc4a4c76158df98f8a8b789b8601 670 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ALFP_0136 af7afc4a4c76158df98f8a8b789b8601 670 SUPERFAMILY SSF56059 83 348 4.07E-69 T 12-10-2018 ALFP_0136 af7afc4a4c76158df98f8a8b789b8601 670 Pfam PF00364 Biotin-requiring enzyme 603 668 2.7E-17 T 12-10-2018 IPR000089 Biotin/lipoyl attachment ALFP_0136 af7afc4a4c76158df98f8a8b789b8601 670 Gene3D G3DSA:2.40.50.100 604 669 6.9E-23 T 12-10-2018 ALFP_0136 af7afc4a4c76158df98f8a8b789b8601 670 Gene3D G3DSA:3.30.470.130 1 455 1.6E-199 T 12-10-2018 ALFP_0136 af7afc4a4c76158df98f8a8b789b8601 670 SUPERFAMILY SSF52440 2 113 6.33E-47 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily ALFP_0136 af7afc4a4c76158df98f8a8b789b8601 670 SUPERFAMILY SSF51246 331 453 2.62E-39 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 ALFP_0136 af7afc4a4c76158df98f8a8b789b8601 670 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 323 3.2E-76 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ALFP_3089 25fd231b7bdfa2f5f0ec13d11279c4d9 352 SUPERFAMILY SSF55961 137 348 9.89E-32 T 12-10-2018 ALFP_3089 25fd231b7bdfa2f5f0ec13d11279c4d9 352 Pfam PF00355 Rieske [2Fe-2S] domain 27 108 6.0E-20 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ALFP_3089 25fd231b7bdfa2f5f0ec13d11279c4d9 352 Gene3D G3DSA:3.30.530.90 149 351 1.2E-16 T 12-10-2018 ALFP_3089 25fd231b7bdfa2f5f0ec13d11279c4d9 352 SUPERFAMILY SSF50022 19 137 1.05E-32 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_3089 25fd231b7bdfa2f5f0ec13d11279c4d9 352 Gene3D G3DSA:2.102.10.10 23 148 3.0E-33 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_1880 f6b284583e2b716b3603a68e62cf77d8 258 Gene3D G3DSA:3.40.50.80 100 254 7.2E-42 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_1880 f6b284583e2b716b3603a68e62cf77d8 258 PRINTS PR00410 Phenol hydroxylase reductase family signature 51 58 6.2E-5 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1880 f6b284583e2b716b3603a68e62cf77d8 258 PRINTS PR00410 Phenol hydroxylase reductase family signature 111 130 6.2E-5 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1880 f6b284583e2b716b3603a68e62cf77d8 258 PRINTS PR00410 Phenol hydroxylase reductase family signature 215 223 6.2E-5 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_1880 f6b284583e2b716b3603a68e62cf77d8 258 Pfam PF00175 Oxidoreductase NAD-binding domain 113 228 1.2E-7 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ALFP_1880 f6b284583e2b716b3603a68e62cf77d8 258 SUPERFAMILY SSF63380 6 99 2.15E-25 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_1880 f6b284583e2b716b3603a68e62cf77d8 258 Gene3D G3DSA:2.40.30.10 1 97 3.4E-28 T 12-10-2018 ALFP_1880 f6b284583e2b716b3603a68e62cf77d8 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 215 223 1.6E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_1880 f6b284583e2b716b3603a68e62cf77d8 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 136 145 1.6E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_1880 f6b284583e2b716b3603a68e62cf77d8 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 111 130 1.6E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_1880 f6b284583e2b716b3603a68e62cf77d8 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 51 58 1.6E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_1880 f6b284583e2b716b3603a68e62cf77d8 258 SUPERFAMILY SSF52343 103 256 1.13E-39 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_1880 f6b284583e2b716b3603a68e62cf77d8 258 Pfam PF00970 Oxidoreductase FAD-binding domain 16 98 5.8E-9 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 ALFP_0404 7a2bdd89cbfbd45388a89f86490bc33d 119 SUPERFAMILY SSF57716 79 117 2.42E-8 T 12-10-2018 ALFP_0404 7a2bdd89cbfbd45388a89f86490bc33d 119 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 1 109 1.3E-41 T 12-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 ALFP_0404 7a2bdd89cbfbd45388a89f86490bc33d 119 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 77 112 4.5E-11 T 12-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 ALFP_0404 7a2bdd89cbfbd45388a89f86490bc33d 119 Gene3D G3DSA:1.20.120.910 1 117 5.2E-33 T 12-10-2018 ALFP_0404 7a2bdd89cbfbd45388a89f86490bc33d 119 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 1 118 26.386 T 12-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 ALFP_0404 7a2bdd89cbfbd45388a89f86490bc33d 119 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 82 106 - T 12-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site ALFP_0404 7a2bdd89cbfbd45388a89f86490bc33d 119 SUPERFAMILY SSF109635 1 78 9.42E-22 T 12-10-2018 IPR037187 DksA, N-terminal domain superfamily ALFP_2599 bdf895cd01ab0da8c72fd2d2df37786f 255 Gene3D G3DSA:1.20.120.1760 9 156 1.0E-16 T 12-10-2018 ALFP_2599 bdf895cd01ab0da8c72fd2d2df37786f 255 Pfam PF01066 CDP-alcohol phosphatidyltransferase 18 81 4.4E-14 T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 ALFP_2599 bdf895cd01ab0da8c72fd2d2df37786f 255 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 23 164 3.8E-35 T 12-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 ALFP_2599 bdf895cd01ab0da8c72fd2d2df37786f 255 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 59 81 - T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 ALFP_3506 b40765816f12bf67607ce9b8b4732249 365 Pfam PF07715 TonB-dependent Receptor Plug Domain 171 267 1.4E-15 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_3506 b40765816f12bf67607ce9b8b4732249 365 Gene3D G3DSA:2.170.130.10 149 283 2.0E-36 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_3506 b40765816f12bf67607ce9b8b4732249 365 Pfam PF07660 Secretin and TonB N terminus short domain 88 125 1.0E-8 T 12-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 ALFP_3506 b40765816f12bf67607ce9b8b4732249 365 Gene3D G3DSA:3.55.50.30 50 148 1.1E-22 T 12-10-2018 ALFP_3506 b40765816f12bf67607ce9b8b4732249 365 SUPERFAMILY SSF56935 132 354 1.56E-45 T 12-10-2018 ALFP_3506 b40765816f12bf67607ce9b8b4732249 365 SMART SM00965 81 130 4.1E-8 T 12-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 ALFP_3506 b40765816f12bf67607ce9b8b4732249 365 Gene3D G3DSA:2.40.170.20 284 357 7.1E-21 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_1411 5d7842d2033a13166597cce5458b07a9 206 SUPERFAMILY SSF54719 96 205 1.7E-42 T 12-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1411 5d7842d2033a13166597cce5458b07a9 206 Gene3D G3DSA:1.10.287.990 34 96 1.4E-26 T 12-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1411 5d7842d2033a13166597cce5458b07a9 206 PRINTS PR01703 Manganese superoxide dismutase signature 132 140 1.3E-22 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1411 5d7842d2033a13166597cce5458b07a9 206 PRINTS PR01703 Manganese superoxide dismutase signature 41 54 1.3E-22 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1411 5d7842d2033a13166597cce5458b07a9 206 PRINTS PR01703 Manganese superoxide dismutase signature 79 92 1.3E-22 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1411 5d7842d2033a13166597cce5458b07a9 206 PRINTS PR01703 Manganese superoxide dismutase signature 169 181 1.3E-22 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1411 5d7842d2033a13166597cce5458b07a9 206 PRINTS PR01703 Manganese superoxide dismutase signature 20 31 1.3E-22 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1411 5d7842d2033a13166597cce5458b07a9 206 PIRSF PIRSF000349 5 206 2.8E-86 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1411 5d7842d2033a13166597cce5458b07a9 206 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 103 203 3.1E-38 T 12-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1411 5d7842d2033a13166597cce5458b07a9 206 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 171 178 - T 12-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1411 5d7842d2033a13166597cce5458b07a9 206 Gene3D G3DSA:2.40.500.20 97 206 1.2E-41 T 12-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1411 5d7842d2033a13166597cce5458b07a9 206 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 17 96 2.4E-35 T 12-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1411 5d7842d2033a13166597cce5458b07a9 206 SUPERFAMILY SSF46609 13 97 1.28E-36 T 12-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_2822 b9bb913c973f476781a6113a1cdc905b 321 Pfam PF00581 Rhodanese-like domain 182 297 1.5E-7 T 12-10-2018 IPR001763 Rhodanese-like domain ALFP_2822 b9bb913c973f476781a6113a1cdc905b 321 Pfam PF00581 Rhodanese-like domain 39 152 1.7E-15 T 12-10-2018 IPR001763 Rhodanese-like domain ALFP_2822 b9bb913c973f476781a6113a1cdc905b 321 Gene3D G3DSA:3.40.250.10 186 306 6.4E-24 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_2822 b9bb913c973f476781a6113a1cdc905b 321 SUPERFAMILY SSF52821 174 303 4.71E-22 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_2822 b9bb913c973f476781a6113a1cdc905b 321 SMART SM00450 38 156 5.0E-18 T 12-10-2018 IPR001763 Rhodanese-like domain ALFP_2822 b9bb913c973f476781a6113a1cdc905b 321 SMART SM00450 180 301 8.9E-9 T 12-10-2018 IPR001763 Rhodanese-like domain ALFP_2822 b9bb913c973f476781a6113a1cdc905b 321 Gene3D G3DSA:3.40.250.10 23 174 4.8E-35 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_2822 b9bb913c973f476781a6113a1cdc905b 321 SUPERFAMILY SSF52821 32 174 2.75E-30 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_0283 0851b62c474387e2d8aaa1ff5e9243ea 525 Pfam PF11806 Domain of unknown function (DUF3327) 164 266 2.0E-14 T 12-10-2018 IPR021764 Enterochelin esterase, N-terminal GO:0005506|GO:0005737|GO:0006826|GO:0008849 ALFP_0283 0851b62c474387e2d8aaa1ff5e9243ea 525 SUPERFAMILY SSF53474 272 513 4.35E-41 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0283 0851b62c474387e2d8aaa1ff5e9243ea 525 Pfam PF00756 Putative esterase 287 508 5.6E-30 T 12-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 ALFP_0283 0851b62c474387e2d8aaa1ff5e9243ea 525 SUPERFAMILY SSF81296 140 264 7.0E-24 T 12-10-2018 IPR014756 Immunoglobulin E-set ALFP_0283 0851b62c474387e2d8aaa1ff5e9243ea 525 Gene3D G3DSA:3.40.50.1820 260 515 3.0E-61 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0283 0851b62c474387e2d8aaa1ff5e9243ea 525 Gene3D G3DSA:2.60.40.10 133 253 5.5E-7 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_2147 af0d657be4f35638946d0eb91d411d7c 339 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 21 335 4.8E-148 T 12-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 ALFP_2147 af0d657be4f35638946d0eb91d411d7c 339 Pfam PF13531 Bacterial extracellular solute-binding protein 38 289 6.0E-46 T 12-10-2018 ALFP_2147 af0d657be4f35638946d0eb91d411d7c 339 Gene3D G3DSA:3.40.190.10 36 304 1.5E-134 T 12-10-2018 ALFP_2147 af0d657be4f35638946d0eb91d411d7c 339 SUPERFAMILY SSF53850 29 336 1.12E-89 T 12-10-2018 ALFP_2147 af0d657be4f35638946d0eb91d411d7c 339 Gene3D G3DSA:3.40.190.10 123 333 1.5E-134 T 12-10-2018 ALFP_0402 d997c9072fd0b7634e4853477f22789e 440 SUPERFAMILY SSF52540 2 435 2.04E-83 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0402 d997c9072fd0b7634e4853477f22789e 440 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 1 440 5.1E-199 T 12-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 ALFP_0402 d997c9072fd0b7634e4853477f22789e 440 Pfam PF07724 AAA domain (Cdc48 subfamily) 182 326 2.7E-38 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 ALFP_0402 d997c9072fd0b7634e4853477f22789e 440 Gene3D G3DSA:1.10.8.60 332 437 1.2E-34 T 12-10-2018 ALFP_0402 d997c9072fd0b7634e4853477f22789e 440 SMART SM00382 46 329 4.6E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0402 d997c9072fd0b7634e4853477f22789e 440 SMART SM01086 332 428 4.5E-15 T 12-10-2018 IPR019489 Clp ATPase, C-terminal ALFP_0402 d997c9072fd0b7634e4853477f22789e 440 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 440 41.604 T 12-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 ALFP_0402 d997c9072fd0b7634e4853477f22789e 440 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 50 96 2.1E-6 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 ALFP_3428 296fb5da8dc0926e4d7774e56c76630f 419 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 414 44.223 T 12-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_3428 296fb5da8dc0926e4d7774e56c76630f 419 Gene3D G3DSA:3.65.10.10 6 411 1.7E-167 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 ALFP_3428 296fb5da8dc0926e4d7774e56c76630f 419 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 404 1.2E-106 T 12-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 ALFP_3428 296fb5da8dc0926e4d7774e56c76630f 419 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 413 1.3E-175 T 12-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_3428 296fb5da8dc0926e4d7774e56c76630f 419 SUPERFAMILY SSF55205 1 415 4.41E-142 T 12-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 ALFP_3428 296fb5da8dc0926e4d7774e56c76630f 419 Gene3D G3DSA:3.65.10.10 21 227 1.7E-167 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 ALFP_0684 177eb8ba9de85899a288b35e05d19d36 441 PIRSF PIRSF006066 1 441 9.5E-151 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_0684 177eb8ba9de85899a288b35e05d19d36 441 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 430 3.3E-124 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_0684 177eb8ba9de85899a288b35e05d19d36 441 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 435 4.9E-150 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_0521 673a598543012d633bdf691615a036d8 124 Pfam PF12643 MazG-like family 43 124 1.3E-16 T 12-10-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 ALFP_0521 673a598543012d633bdf691615a036d8 124 PIRSF PIRSF029826 2 124 1.9E-48 T 12-10-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 ALFP_0521 673a598543012d633bdf691615a036d8 124 Gene3D G3DSA:1.10.287.1080 4 117 4.4E-36 T 12-10-2018 ALFP_0521 673a598543012d633bdf691615a036d8 124 SUPERFAMILY SSF101386 6 123 1.0E-38 T 12-10-2018 ALFP_1453 b121b16dc8dfc1d9dc531e08c07f7af8 307 Pfam PF05175 Methyltransferase small domain 125 223 7.2E-17 T 12-10-2018 IPR007848 Methyltransferase small domain GO:0008168 ALFP_1453 b121b16dc8dfc1d9dc531e08c07f7af8 307 Gene3D G3DSA:3.40.50.150 111 298 6.9E-46 T 12-10-2018 ALFP_1453 b121b16dc8dfc1d9dc531e08c07f7af8 307 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 11 307 49.283 T 12-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 ALFP_1453 b121b16dc8dfc1d9dc531e08c07f7af8 307 SUPERFAMILY SSF53335 21 276 1.15E-48 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_1453 b121b16dc8dfc1d9dc531e08c07f7af8 307 PIRSF PIRSF037167 6 307 1.6E-122 T 12-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 ALFP_1453 b121b16dc8dfc1d9dc531e08c07f7af8 307 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 211 217 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 ALFP_1453 b121b16dc8dfc1d9dc531e08c07f7af8 307 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 18 301 3.8E-118 T 12-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 ALFP_1453 b121b16dc8dfc1d9dc531e08c07f7af8 307 Gene3D G3DSA:1.10.8.10 20 110 1.2E-7 T 12-10-2018 ALFP_1453 b121b16dc8dfc1d9dc531e08c07f7af8 307 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 20 306 1.8E-70 T 12-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 ALFP_3100 e3fa0214a36fac2800368bb586c645df 163 Pfam PF05433 Glycine zipper 2TM domain 71 111 1.6E-6 T 12-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 ALFP_3098 bc201905a16accaae64f0f89faae4000 187 Pfam PF02325 YGGT family 12 80 1.5E-11 T 12-10-2018 IPR003425 CCB3/YggT GO:0016020 ALFP_3098 bc201905a16accaae64f0f89faae4000 187 Pfam PF02325 YGGT family 110 177 1.7E-16 T 12-10-2018 IPR003425 CCB3/YggT GO:0016020 ALFP_0099 7e8935212a4769c52cb280828f13b1fc 186 Gene3D G3DSA:1.10.1740.10 4 76 2.8E-9 T 12-10-2018 ALFP_0099 7e8935212a4769c52cb280828f13b1fc 186 Gene3D G3DSA:1.10.10.10 81 169 3.2E-8 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0099 7e8935212a4769c52cb280828f13b1fc 186 Pfam PF04542 Sigma-70 region 2 13 79 1.5E-13 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_0099 7e8935212a4769c52cb280828f13b1fc 186 Pfam PF08281 Sigma-70, region 4 110 162 9.5E-12 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ALFP_0099 7e8935212a4769c52cb280828f13b1fc 186 SUPERFAMILY SSF88946 11 94 1.69E-15 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_0099 7e8935212a4769c52cb280828f13b1fc 186 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 159 5.3E-22 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 ALFP_0099 7e8935212a4769c52cb280828f13b1fc 186 SUPERFAMILY SSF88659 103 164 5.23E-11 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like ALFP_3015 7eea3404fbb67ea074da12ae3e5e1f70 271 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 21 265 3.8E-91 T 12-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 ALFP_3015 7eea3404fbb67ea074da12ae3e5e1f70 271 SUPERFAMILY SSF161098 71 260 1.09E-31 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3015 7eea3404fbb67ea074da12ae3e5e1f70 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 265 8.5E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_3015 7eea3404fbb67ea074da12ae3e5e1f70 271 Gene3D G3DSA:1.10.3720.10 68 267 1.9E-30 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3387 d900990010a7641e5c2e6e2012b077db 446 Gene3D G3DSA:3.40.640.10 111 347 1.5E-136 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_3387 d900990010a7641e5c2e6e2012b077db 446 SUPERFAMILY SSF53383 68 445 1.71E-101 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_3387 d900990010a7641e5c2e6e2012b077db 446 Pfam PF00155 Aminotransferase class I and II 96 439 4.5E-52 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_3387 d900990010a7641e5c2e6e2012b077db 446 Gene3D G3DSA:3.90.1150.10 91 440 1.5E-136 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_1030 784849758939842f12fb6563c407b5b8 299 Gene3D G3DSA:3.20.20.60 6 299 8.8E-106 T 12-10-2018 ALFP_1030 784849758939842f12fb6563c407b5b8 299 SUPERFAMILY SSF51621 5 293 7.63E-101 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 ALFP_1030 784849758939842f12fb6563c407b5b8 299 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 10 294 1.3E-127 T 12-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 ALFP_1030 784849758939842f12fb6563c407b5b8 299 ProSitePatterns PS00161 Isocitrate lyase signature. 124 129 - T 12-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 ALFP_1030 784849758939842f12fb6563c407b5b8 299 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 7 295 48.841 T 12-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 ALFP_1030 784849758939842f12fb6563c407b5b8 299 Pfam PF13714 Phosphoenolpyruvate phosphomutase 13 257 9.0E-52 T 12-10-2018 ALFP_2790 7b4b82acbbf7efd0e922c3f60758668d 344 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 300 320 - T 12-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 ALFP_2790 7b4b82acbbf7efd0e922c3f60758668d 344 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 8 342 1.9E-128 T 12-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 ALFP_2790 7b4b82acbbf7efd0e922c3f60758668d 344 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 85 104 - T 12-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 ALFP_2790 7b4b82acbbf7efd0e922c3f60758668d 344 Pfam PF01180 Dihydroorotate dehydrogenase 54 343 1.5E-89 T 12-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 ALFP_2790 7b4b82acbbf7efd0e922c3f60758668d 344 Gene3D G3DSA:3.20.20.70 7 343 2.2E-133 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_2790 7b4b82acbbf7efd0e922c3f60758668d 344 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 7 344 49.5 T 12-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 ALFP_2790 7b4b82acbbf7efd0e922c3f60758668d 344 SUPERFAMILY SSF51395 8 343 5.86E-103 T 12-10-2018 ALFP_2790 7b4b82acbbf7efd0e922c3f60758668d 344 PIRSF PIRSF000164 15 344 6.3E-97 T 12-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 ALFP_1313 4fc9999a650001678d5e62b9353e47df 222 SUPERFAMILY SSF56300 12 215 3.48E-33 T 12-10-2018 ALFP_1313 4fc9999a650001678d5e62b9353e47df 222 Pfam PF00149 Calcineurin-like phosphoesterase 16 155 4.9E-11 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 ALFP_1313 4fc9999a650001678d5e62b9353e47df 222 Gene3D G3DSA:3.60.21.10 3 218 1.9E-43 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like ALFP_2769 d7dba316a64fdf7ba7a284cddbc9026b 472 SUPERFAMILY SSF160246 2 64 7.32E-8 T 12-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily ALFP_2769 d7dba316a64fdf7ba7a284cddbc9026b 472 Pfam PF00437 Type II/IV secretion system protein 113 377 2.4E-84 T 12-10-2018 IPR001482 Type II/IV secretion system protein ALFP_2769 d7dba316a64fdf7ba7a284cddbc9026b 472 Gene3D G3DSA:3.40.50.300 211 472 1.6E-109 T 12-10-2018 ALFP_2769 d7dba316a64fdf7ba7a284cddbc9026b 472 SUPERFAMILY SSF52540 87 469 3.46E-102 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2769 d7dba316a64fdf7ba7a284cddbc9026b 472 Gene3D G3DSA:3.30.450.90 74 210 2.7E-50 T 12-10-2018 ALFP_2769 d7dba316a64fdf7ba7a284cddbc9026b 472 SMART SM00382 238 359 2.6E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2769 d7dba316a64fdf7ba7a284cddbc9026b 472 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 305 319 - T 12-10-2018 IPR001482 Type II/IV secretion system protein ALFP_2769 d7dba316a64fdf7ba7a284cddbc9026b 472 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 2 469 4.9E-205 T 12-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 ALFP_1138 499b8948a62533b4cc8ba0d91bc79398 255 Pfam PF00535 Glycosyl transferase family 2 9 128 1.4E-18 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 ALFP_1138 499b8948a62533b4cc8ba0d91bc79398 255 Gene3D G3DSA:3.90.550.10 3 159 3.6E-29 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_1138 499b8948a62533b4cc8ba0d91bc79398 255 SUPERFAMILY SSF53448 7 151 2.81E-29 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_1243 c48ce35c08800e484caa7e69751c09d7 1072 PIRSF PIRSF034585 1 1072 0.0 T 12-10-2018 IPR009216 Virulence factor SrfB ALFP_1243 c48ce35c08800e484caa7e69751c09d7 1072 Pfam PF07520 Virulence factor SrfB 1 1069 0.0 T 12-10-2018 IPR009216 Virulence factor SrfB ALFP_1216 4045fcb327f79b9931059c92f3190bbc 229 SMART SM00479 35 205 5.1E-22 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III ALFP_1216 4045fcb327f79b9931059c92f3190bbc 229 Pfam PF00929 Exonuclease 38 195 5.3E-14 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III ALFP_1216 4045fcb327f79b9931059c92f3190bbc 229 SUPERFAMILY SSF53098 31 209 5.57E-38 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily ALFP_1216 4045fcb327f79b9931059c92f3190bbc 229 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 31 219 1.2E-20 T 12-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_1216 4045fcb327f79b9931059c92f3190bbc 229 Gene3D G3DSA:3.30.420.10 30 213 2.1E-33 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 ALFP_2197 f1898abc1ffd2d46d92502884d9dcf6e 262 Pfam PF00795 Carbon-nitrogen hydrolase 2 245 9.9E-45 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 ALFP_2197 f1898abc1ffd2d46d92502884d9dcf6e 262 SUPERFAMILY SSF56317 1 254 9.29E-68 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily ALFP_2197 f1898abc1ffd2d46d92502884d9dcf6e 262 Gene3D G3DSA:3.60.110.10 1 257 4.6E-72 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily ALFP_2197 f1898abc1ffd2d46d92502884d9dcf6e 262 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 143 163 - T 12-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site ALFP_2693 802bb5578e53aa80768caa96b384840a 491 Pfam PF00171 Aldehyde dehydrogenase family 28 486 2.6E-172 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_2693 802bb5578e53aa80768caa96b384840a 491 Gene3D G3DSA:3.40.309.10 270 459 6.1E-185 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_2693 802bb5578e53aa80768caa96b384840a 491 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 263 270 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 ALFP_2693 802bb5578e53aa80768caa96b384840a 491 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 291 302 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 ALFP_2693 802bb5578e53aa80768caa96b384840a 491 Gene3D G3DSA:3.40.605.10 28 482 6.1E-185 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_2693 802bb5578e53aa80768caa96b384840a 491 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 39 485 2.6E-212 T 12-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 ALFP_2693 802bb5578e53aa80768caa96b384840a 491 SUPERFAMILY SSF53720 18 490 6.28E-171 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_0635 52e66328b7c2d1f3f515bbcd02dea85f 295 SUPERFAMILY SSF46785 3 86 7.87E-27 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0635 52e66328b7c2d1f3f515bbcd02dea85f 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.6E-13 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0635 52e66328b7c2d1f3f515bbcd02dea85f 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.6E-13 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0635 52e66328b7c2d1f3f515bbcd02dea85f 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.6E-13 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0635 52e66328b7c2d1f3f515bbcd02dea85f 295 Gene3D G3DSA:1.10.10.10 1 90 5.3E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0635 52e66328b7c2d1f3f515bbcd02dea85f 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.1E-25 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0635 52e66328b7c2d1f3f515bbcd02dea85f 295 Pfam PF03466 LysR substrate binding domain 88 287 2.5E-45 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0635 52e66328b7c2d1f3f515bbcd02dea85f 295 SUPERFAMILY SSF53850 90 291 6.88E-44 T 12-10-2018 ALFP_0635 52e66328b7c2d1f3f515bbcd02dea85f 295 Gene3D G3DSA:3.40.190.290 91 293 3.0E-61 T 12-10-2018 ALFP_0881 40ee5d3f789bbb7fd239405fbe029139 268 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0881 40ee5d3f789bbb7fd239405fbe029139 268 Gene3D G3DSA:3.40.50.300 4 220 3.6E-63 T 12-10-2018 ALFP_0881 40ee5d3f789bbb7fd239405fbe029139 268 SUPERFAMILY SSF52540 6 232 1.09E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0881 40ee5d3f789bbb7fd239405fbe029139 268 Pfam PF00005 ABC transporter 28 166 3.1E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0881 40ee5d3f789bbb7fd239405fbe029139 268 SMART SM00382 36 216 5.2E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1495 4001989b7dbb3bbde2c0764945c182a9 311 Gene3D G3DSA:1.20.1530.20 1 306 2.4E-111 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily ALFP_1495 4001989b7dbb3bbde2c0764945c182a9 311 Pfam PF01758 Sodium Bile acid symporter family 42 219 7.5E-42 T 12-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 540 550 1.8E-23 T 12-10-2018 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 616 628 1.8E-23 T 12-10-2018 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 397 411 1.8E-23 T 12-10-2018 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 246 260 1.8E-23 T 12-10-2018 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 592 611 1.8E-23 T 12-10-2018 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 168 676 4.9E-72 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 PRINTS PR00941 Cadmium-transporting ATPase signature 126 138 1.6E-6 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 PRINTS PR00941 Cadmium-transporting ATPase signature 262 278 1.6E-6 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 PRINTS PR00941 Cadmium-transporting ATPase signature 180 200 1.6E-6 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 SUPERFAMILY SSF55008 10 73 1.15E-9 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 SUPERFAMILY SSF81665 146 383 3.66E-14 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 Gene3D G3DSA:3.40.1110.10 408 525 1.5E-74 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 Pfam PF00702 haloacid dehalogenase-like hydrolase 396 606 7.5E-32 T 12-10-2018 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 SUPERFAMILY SSF56784 396 693 1.48E-49 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 Gene3D G3DSA:3.40.50.1000 378 644 1.5E-74 T 12-10-2018 IPR023214 HAD superfamily ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 Gene3D G3DSA:3.30.70.100 7 75 1.5E-5 T 12-10-2018 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 Gene3D G3DSA:2.70.150.20 184 300 1.7E-30 T 12-10-2018 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 399 405 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 Pfam PF00122 E1-E2 ATPase 196 376 5.7E-47 T 12-10-2018 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 SUPERFAMILY SSF81653 206 296 3.27E-19 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 ALFP_1173 eed39c1e9c2dd642e9899e9a83096a8f 701 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 145 695 1.1E-166 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 ALFP_0935 08dd40f4428ef40a271613d44b69f1aa 230 Gene3D G3DSA:3.40.50.300 2 223 6.0E-66 T 12-10-2018 ALFP_0935 08dd40f4428ef40a271613d44b69f1aa 230 PIRSF PIRSF006755 1 230 5.8E-70 T 12-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 ALFP_0935 08dd40f4428ef40a271613d44b69f1aa 230 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 5 175 2.5E-45 T 12-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 ALFP_0935 08dd40f4428ef40a271613d44b69f1aa 230 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 1 220 28.508 T 12-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 ALFP_0935 08dd40f4428ef40a271613d44b69f1aa 230 SUPERFAMILY SSF52540 1 215 1.41E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0935 08dd40f4428ef40a271613d44b69f1aa 230 Pfam PF13500 AAA domain 3 209 2.6E-41 T 12-10-2018 ALFP_0710 028d303301419319d5fa0813d8deb7dd 378 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 6 371 2.9E-163 T 12-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 ALFP_0710 028d303301419319d5fa0813d8deb7dd 378 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 6 371 3.2E-157 T 12-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 ALFP_0710 028d303301419319d5fa0813d8deb7dd 378 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 4 372 54.226 T 12-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 ALFP_0710 028d303301419319d5fa0813d8deb7dd 378 Gene3D G3DSA:3.20.20.105 1 375 1.6E-164 T 12-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 ALFP_0710 028d303301419319d5fa0813d8deb7dd 378 SUPERFAMILY SSF51713 4 371 2.75E-154 T 12-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 ALFP_0710 028d303301419319d5fa0813d8deb7dd 378 Pfam PF01702 Queuine tRNA-ribosyltransferase 130 369 2.9E-90 T 12-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 Pfam PF00330 Aconitase family (aconitate hydratase) 64 551 1.8E-154 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 SUPERFAMILY SSF53732 26 614 4.58E-186 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 Gene3D G3DSA:3.30.499.20 3 363 1.8E-131 T 12-10-2018 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 Gene3D G3DSA:1.10.1440.20 580 641 4.8E-12 T 12-10-2018 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 Gene3D G3DSA:3.20.19.10 644 883 2.9E-93 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 PRINTS PR00415 Aconitase family signature 160 168 1.3E-38 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 PRINTS PR00415 Aconitase family signature 136 149 1.3E-38 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 PRINTS PR00415 Aconitase family signature 420 431 1.3E-38 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 PRINTS PR00415 Aconitase family signature 207 222 1.3E-38 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 PRINTS PR00415 Aconitase family signature 283 296 1.3E-38 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 PRINTS PR00415 Aconitase family signature 269 282 1.3E-38 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 PRINTS PR00415 Aconitase family signature 363 377 1.3E-38 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 PRINTS PR00415 Aconitase family signature 482 495 1.3E-38 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 PRINTS PR00415 Aconitase family signature 193 206 1.3E-38 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 Pfam PF00694 Aconitase C-terminal domain 682 809 6.9E-41 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 25 881 0.0 T 12-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 Gene3D G3DSA:3.30.499.10 364 579 4.1E-85 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 ALFP_1336 56ab49977885b9f539ee9cf2e349a15b 884 SUPERFAMILY SSF52016 621 882 1.02E-78 T 12-10-2018 ALFP_0543 0ab79355bffcad8e4075f12bfa3a885d 474 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 453 33.53 T 12-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 ALFP_0543 0ab79355bffcad8e4075f12bfa3a885d 474 SMART SM00963 1 86 1.1E-32 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 ALFP_0543 0ab79355bffcad8e4075f12bfa3a885d 474 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 282 295 - T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 ALFP_0543 0ab79355bffcad8e4075f12bfa3a885d 474 Gene3D G3DSA:1.20.120.140 4 319 6.8E-119 T 12-10-2018 ALFP_0543 0ab79355bffcad8e4075f12bfa3a885d 474 SUPERFAMILY SSF47446 341 445 4.25E-35 T 12-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 ALFP_0543 0ab79355bffcad8e4075f12bfa3a885d 474 SMART SM00962 104 309 6.7E-114 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 ALFP_0543 0ab79355bffcad8e4075f12bfa3a885d 474 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 4.7E-18 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 ALFP_0543 0ab79355bffcad8e4075f12bfa3a885d 474 Gene3D G3DSA:1.10.260.30 341 466 5.3E-43 T 12-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 ALFP_0543 0ab79355bffcad8e4075f12bfa3a885d 474 SUPERFAMILY SSF52540 42 370 3.32E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0543 0ab79355bffcad8e4075f12bfa3a885d 474 SMART SM00382 103 283 5.1E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0543 0ab79355bffcad8e4075f12bfa3a885d 474 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 443 6.1E-172 T 12-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 ALFP_0543 0ab79355bffcad8e4075f12bfa3a885d 474 Pfam PF02978 Signal peptide binding domain 341 441 3.0E-32 T 12-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 ALFP_0543 0ab79355bffcad8e4075f12bfa3a885d 474 Gene3D G3DSA:3.40.50.300 95 298 6.8E-119 T 12-10-2018 ALFP_0543 0ab79355bffcad8e4075f12bfa3a885d 474 Pfam PF00448 SRP54-type protein, GTPase domain 105 308 5.9E-69 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 ALFP_3624 a37d079a4825b330d86fc7985c31e886 177 SUPERFAMILY SSF56053 83 177 7.77E-35 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3624 a37d079a4825b330d86fc7985c31e886 177 SUPERFAMILY SSF56053 1 82 5.04E-23 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3624 a37d079a4825b330d86fc7985c31e886 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 35.376 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 ALFP_3624 a37d079a4825b330d86fc7985c31e886 177 Pfam PF00347 Ribosomal protein L6 12 82 5.5E-15 T 12-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3624 a37d079a4825b330d86fc7985c31e886 177 Pfam PF00347 Ribosomal protein L6 90 164 2.5E-17 T 12-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3624 a37d079a4825b330d86fc7985c31e886 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 4.0E-32 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 ALFP_3624 a37d079a4825b330d86fc7985c31e886 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 4.0E-32 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 ALFP_3624 a37d079a4825b330d86fc7985c31e886 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 4.0E-32 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 ALFP_3624 a37d079a4825b330d86fc7985c31e886 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 7.9E-71 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 ALFP_3624 a37d079a4825b330d86fc7985c31e886 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 12-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3624 a37d079a4825b330d86fc7985c31e886 177 Gene3D G3DSA:3.90.930.12 83 177 4.1E-38 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3624 a37d079a4825b330d86fc7985c31e886 177 PIRSF PIRSF002162 1 177 8.1E-47 T 12-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3624 a37d079a4825b330d86fc7985c31e886 177 Gene3D G3DSA:3.90.930.12 1 82 4.4E-26 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_0598 714652c8b2bf3f2bafe179a96766df53 170 Gene3D G3DSA:2.60.120.480 3 169 4.0E-59 T 12-10-2018 IPR024060 Ureidoglycolate lyase domain superfamily GO:0004848 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 ALFP_0598 714652c8b2bf3f2bafe179a96766df53 170 Pfam PF04115 Ureidoglycolate lyase 3 161 2.0E-52 T 12-10-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 ALFP_0598 714652c8b2bf3f2bafe179a96766df53 170 Hamap MF_00616 Ureidoglycolate lyase [allA]. 3 164 36.342 T 12-10-2018 IPR023525 Ureidoglycolate lyase, bacterial GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 ALFP_0598 714652c8b2bf3f2bafe179a96766df53 170 SUPERFAMILY SSF51182 4 162 3.2E-55 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_0598 714652c8b2bf3f2bafe179a96766df53 170 PIRSF PIRSF017306 3 163 1.3E-45 T 12-10-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 ALFP_3563 a342b2f0769dd506dfe02b2d4538ac66 397 Gene3D G3DSA:3.90.1150.10 9 392 5.7E-156 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_3563 a342b2f0769dd506dfe02b2d4538ac66 397 PRINTS PR00799 Aspartate aminotransferase signature 273 298 3.5E-37 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 ALFP_3563 a342b2f0769dd506dfe02b2d4538ac66 397 PRINTS PR00799 Aspartate aminotransferase signature 206 218 3.5E-37 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 ALFP_3563 a342b2f0769dd506dfe02b2d4538ac66 397 PRINTS PR00799 Aspartate aminotransferase signature 341 359 3.5E-37 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 ALFP_3563 a342b2f0769dd506dfe02b2d4538ac66 397 PRINTS PR00799 Aspartate aminotransferase signature 175 194 3.5E-37 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 ALFP_3563 a342b2f0769dd506dfe02b2d4538ac66 397 Pfam PF00155 Aminotransferase class I and II 27 392 1.2E-82 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_3563 a342b2f0769dd506dfe02b2d4538ac66 397 SUPERFAMILY SSF53383 1 396 1.55E-113 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_3563 a342b2f0769dd506dfe02b2d4538ac66 397 Gene3D G3DSA:3.40.640.10 60 300 5.7E-156 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_1654 ef2dffc03dc4f785afa161f431588894 269 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 252 3.7E-57 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_1654 ef2dffc03dc4f785afa161f431588894 269 Gene3D G3DSA:3.40.190.10 121 212 2.8E-63 T 12-10-2018 ALFP_1654 ef2dffc03dc4f785afa161f431588894 269 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 57 70 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site ALFP_1654 ef2dffc03dc4f785afa161f431588894 269 Gene3D G3DSA:3.40.190.10 25 247 2.8E-63 T 12-10-2018 ALFP_1654 ef2dffc03dc4f785afa161f431588894 269 SUPERFAMILY SSF53850 1 253 2.29E-66 T 12-10-2018 ALFP_1654 ef2dffc03dc4f785afa161f431588894 269 SMART SM00062 33 254 4.4E-62 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_3297 c3b2abb85751134f8f12d5477021197b 146 SUPERFAMILY SSF81573 57 111 4.71E-9 T 12-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily ALFP_3297 c3b2abb85751134f8f12d5477021197b 146 Gene3D G3DSA:1.20.5.620 54 112 2.1E-11 T 12-10-2018 ALFP_3297 c3b2abb85751134f8f12d5477021197b 146 Pfam PF00430 ATP synthase B/B' CF(0) 2 126 8.4E-26 T 12-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 ALFP_3297 c3b2abb85751134f8f12d5477021197b 146 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 128 9.834 T 12-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 ALFP_3297 c3b2abb85751134f8f12d5477021197b 146 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 2 146 1.2E-38 T 12-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 ALFP_1005 b4f6f0b7e1a2f25b9587f481ed7807f0 345 SUPERFAMILY SSF51556 10 341 3.26E-89 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_1005 b4f6f0b7e1a2f25b9587f481ed7807f0 345 Hamap MF_01962 Adenine deaminase. 11 327 80.847 T 12-10-2018 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 ALFP_1005 b4f6f0b7e1a2f25b9587f481ed7807f0 345 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 15 338 5.6E-115 T 12-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 ALFP_1005 b4f6f0b7e1a2f25b9587f481ed7807f0 345 Gene3D G3DSA:3.20.20.140 4 342 1.9E-103 T 12-10-2018 ALFP_1005 b4f6f0b7e1a2f25b9587f481ed7807f0 345 Pfam PF00962 Adenosine/AMP deaminase 15 336 1.1E-76 T 12-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 ALFP_3570 654b89edab4553f3988bbe2a67bb7312 314 Gene3D G3DSA:3.40.50.720 115 285 2.3E-90 T 12-10-2018 ALFP_3570 654b89edab4553f3988bbe2a67bb7312 314 PIRSF PIRSF001439 1 311 2.4E-60 T 12-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 ALFP_3570 654b89edab4553f3988bbe2a67bb7312 314 SUPERFAMILY SSF51735 1 301 4.04E-67 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3570 654b89edab4553f3988bbe2a67bb7312 314 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 7 301 4.6E-39 T 12-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 ALFP_3570 654b89edab4553f3988bbe2a67bb7312 314 Gene3D G3DSA:3.30.1780.10 17 300 2.3E-90 T 12-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 ALFP_2963 dba83c908b49e58d7ff89518bced44c7 495 SUPERFAMILY SSF51338 1 67 7.07E-7 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_2963 dba83c908b49e58d7ff89518bced44c7 495 Pfam PF01979 Amidohydrolase family 55 443 1.9E-28 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 ALFP_2963 dba83c908b49e58d7ff89518bced44c7 495 Gene3D G3DSA:2.30.40.10 17 448 5.4E-85 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_2963 dba83c908b49e58d7ff89518bced44c7 495 SUPERFAMILY SSF51338 366 468 1.93E-23 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_2963 dba83c908b49e58d7ff89518bced44c7 495 SUPERFAMILY SSF51556 57 392 2.02E-53 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_2963 dba83c908b49e58d7ff89518bced44c7 495 Gene3D G3DSA:3.20.20.140 59 390 5.4E-85 T 12-10-2018 ALFP_2292 a116c5f19d246df606e3f3874712fbf6 254 TIGRFAM TIGR02158 PA_CoA_Oxy3: phenylacetate-CoA oxygenase, PaaI subunit 12 254 1.6E-75 T 12-10-2018 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 ALFP_2292 a116c5f19d246df606e3f3874712fbf6 254 SUPERFAMILY SSF47240 3 247 3.78E-68 T 12-10-2018 IPR009078 Ferritin-like superfamily ALFP_2292 a116c5f19d246df606e3f3874712fbf6 254 Pfam PF05138 Phenylacetic acid catabolic protein 3 254 3.4E-82 T 12-10-2018 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 ALFP_2292 a116c5f19d246df606e3f3874712fbf6 254 Gene3D G3DSA:1.20.1260.10 1 254 1.9E-86 T 12-10-2018 IPR012347 Ferritin-like ALFP_2292 a116c5f19d246df606e3f3874712fbf6 254 PIRSF PIRSF037834 1 254 1.1E-86 T 12-10-2018 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 ALFP_1231 c15018530eb6f5c3dfb09af21f451110 106 SUPERFAMILY SSF160544 8 87 1.83E-24 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal ALFP_1231 c15018530eb6f5c3dfb09af21f451110 106 Gene3D G3DSA:3.40.1690.10 8 88 2.2E-25 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal ALFP_1231 c15018530eb6f5c3dfb09af21f451110 106 Pfam PF01312 FlhB HrpN YscU SpaS Family 11 83 1.3E-19 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 ALFP_3144 905f683bd7d2dcadee79b9ecd86c37d1 350 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 158 344 1.4E-21 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_3144 905f683bd7d2dcadee79b9ecd86c37d1 350 Gene3D G3DSA:1.10.3720.10 131 348 2.3E-51 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3144 905f683bd7d2dcadee79b9ecd86c37d1 350 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 138 236 1.2E-19 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 ALFP_3144 905f683bd7d2dcadee79b9ecd86c37d1 350 SUPERFAMILY SSF161098 137 330 1.01E-42 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1633 813d260c388a94139eee1b49d94c2818 580 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 7 404 1.4E-147 T 12-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 ALFP_1633 813d260c388a94139eee1b49d94c2818 580 SUPERFAMILY SSF51905 5 396 5.05E-65 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1633 813d260c388a94139eee1b49d94c2818 580 Pfam PF00890 FAD binding domain 9 380 7.5E-94 T 12-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1633 813d260c388a94139eee1b49d94c2818 580 SUPERFAMILY SSF56425 227 340 2.24E-39 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1633 813d260c388a94139eee1b49d94c2818 580 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 343 365 1.9E-6 T 12-10-2018 ALFP_1633 813d260c388a94139eee1b49d94c2818 580 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 1.9E-6 T 12-10-2018 ALFP_1633 813d260c388a94139eee1b49d94c2818 580 SUPERFAMILY SSF46977 507 580 9.42E-13 T 12-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1633 813d260c388a94139eee1b49d94c2818 580 Gene3D G3DSA:3.90.700.10 237 346 4.4E-144 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1633 813d260c388a94139eee1b49d94c2818 580 Gene3D G3DSA:3.50.50.60 9 392 4.4E-144 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1633 813d260c388a94139eee1b49d94c2818 580 Gene3D G3DSA:1.20.58.100 493 580 6.4E-14 T 12-10-2018 ALFP_2077 658740754d51370036db6328333e487c 459 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 48 302 1.3E-67 T 12-10-2018 IPR017039 Virulence factor BrkB ALFP_2077 658740754d51370036db6328333e487c 459 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 38 332 22.303 T 12-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial ALFP_2077 658740754d51370036db6328333e487c 459 Pfam PF03631 Virulence factor BrkB 55 303 7.7E-55 T 12-10-2018 IPR017039 Virulence factor BrkB ALFP_3373 09eabab74d0b6b9e0a01bd2ac892a09b 492 Pfam PF13641 Glycosyltransferase like family 2 59 288 4.9E-31 T 12-10-2018 ALFP_3373 09eabab74d0b6b9e0a01bd2ac892a09b 492 Gene3D G3DSA:3.90.550.10 49 272 6.6E-61 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_3373 09eabab74d0b6b9e0a01bd2ac892a09b 492 SUPERFAMILY SSF53448 58 326 9.38E-47 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_3009 fe51b869ce08231eb55ab2cfc562cbaa 175 Pfam PF10649 Protein of unknown function (DUF2478) 10 167 8.7E-51 T 12-10-2018 IPR018912 Protein of unknown function DUF2478 ALFP_0207 8d559c98e6ee64e115dca9941c88b549 100 Pfam PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system 19 91 2.9E-32 T 12-10-2018 IPR018669 Toxin-antitoxin system, toxin component, HigB, putative GO:0016788 ALFP_2162 2318dd01100e53bd3490612e06edcc1a 114 Pfam PF00034 Cytochrome c 48 113 1.3E-5 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2162 2318dd01100e53bd3490612e06edcc1a 114 Gene3D G3DSA:1.10.760.10 38 113 8.3E-23 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2162 2318dd01100e53bd3490612e06edcc1a 114 SUPERFAMILY SSF46626 40 113 6.59E-19 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_3317 60113ad7cc1ac0d2c32fef10a71bcb20 328 Pfam PF16344 Domain of unknown function (DUF4974) 243 307 3.8E-9 T 12-10-2018 IPR032508 Protein FecR, C-terminal ALFP_3317 60113ad7cc1ac0d2c32fef10a71bcb20 328 PIRSF PIRSF018266 4 328 1.6E-78 T 12-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component ALFP_3317 60113ad7cc1ac0d2c32fef10a71bcb20 328 Pfam PF04773 FecR protein 119 211 9.3E-24 T 12-10-2018 IPR006860 FecR protein ALFP_3317 60113ad7cc1ac0d2c32fef10a71bcb20 328 Pfam PF16220 Domain of unknown function (DUF4880) 15 57 3.3E-8 T 12-10-2018 IPR032623 FecR, N-terminal ALFP_3317 60113ad7cc1ac0d2c32fef10a71bcb20 328 Gene3D G3DSA:2.60.120.1440 106 248 1.9E-27 T 12-10-2018 ALFP_2789 e59d452bb0e7fe217fd3cc0aa2514648 241 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 21 91 1.4E-19 T 12-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 ALFP_2789 e59d452bb0e7fe217fd3cc0aa2514648 241 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 11 238 39.877 T 12-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 ALFP_2789 e59d452bb0e7fe217fd3cc0aa2514648 241 PIRSF PIRSF037208 5 241 7.2E-87 T 12-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 ALFP_2789 e59d452bb0e7fe217fd3cc0aa2514648 241 SUPERFAMILY SSF55729 89 239 3.36E-15 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_2789 e59d452bb0e7fe217fd3cc0aa2514648 241 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 111 232 2.6E-38 T 12-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 ALFP_2068 d96a3f9cff9638034bf9f76f02a689ea 477 Gene3D G3DSA:3.40.640.10 105 465 2.2E-115 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2068 d96a3f9cff9638034bf9f76f02a689ea 477 SUPERFAMILY SSF53383 93 470 8.77E-86 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2068 d96a3f9cff9638034bf9f76f02a689ea 477 SUPERFAMILY SSF46785 10 82 4.08E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2068 d96a3f9cff9638034bf9f76f02a689ea 477 SMART SM00345 20 79 3.9E-10 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2068 d96a3f9cff9638034bf9f76f02a689ea 477 Pfam PF00155 Aminotransferase class I and II 140 434 1.1E-20 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_2068 d96a3f9cff9638034bf9f76f02a689ea 477 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 79 6.4E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2068 d96a3f9cff9638034bf9f76f02a689ea 477 Gene3D G3DSA:1.10.10.10 13 100 1.4E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0990 3550b2035abef69a8216e0eacdae32fe 334 Gene3D G3DSA:3.40.190.10 130 310 9.5E-67 T 12-10-2018 ALFP_0990 3550b2035abef69a8216e0eacdae32fe 334 SUPERFAMILY SSF53850 35 326 1.51E-50 T 12-10-2018 ALFP_0990 3550b2035abef69a8216e0eacdae32fe 334 Gene3D G3DSA:3.40.190.10 34 298 9.5E-67 T 12-10-2018 ALFP_0990 3550b2035abef69a8216e0eacdae32fe 334 PIRSF PIRSF002825 3 330 4.8E-65 T 12-10-2018 IPR026045 Ferric binding protein ALFP_0990 3550b2035abef69a8216e0eacdae32fe 334 Pfam PF13343 Bacterial extracellular solute-binding protein 78 306 3.9E-31 T 12-10-2018 ALFP_3106 a5a9289ee2264b7f5daa56c4a74fd722 144 PIRSF PIRSF001399 1 144 2.2E-60 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 ALFP_3106 a5a9289ee2264b7f5daa56c4a74fd722 144 ProSitePatterns PS01029 Dehydroquinase class II signature. 8 25 - T 12-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 ALFP_3106 a5a9289ee2264b7f5daa56c4a74fd722 144 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 142 3.5E-62 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 ALFP_3106 a5a9289ee2264b7f5daa56c4a74fd722 144 SUPERFAMILY SSF52304 4 143 7.46E-63 T 12-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 ALFP_3106 a5a9289ee2264b7f5daa56c4a74fd722 144 Gene3D G3DSA:3.40.50.9100 1 144 1.3E-67 T 12-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 ALFP_3106 a5a9289ee2264b7f5daa56c4a74fd722 144 Pfam PF01220 Dehydroquinase class II 5 141 1.7E-62 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 ALFP_3106 a5a9289ee2264b7f5daa56c4a74fd722 144 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 144 72.457 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 ALFP_3106 a5a9289ee2264b7f5daa56c4a74fd722 144 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 19 142 3.0E-44 T 12-10-2018 ALFP_0907 d66031ef71edab8b472a326d3badd6d5 541 SUPERFAMILY SSF56801 12 539 8.77E-141 T 12-10-2018 ALFP_0907 d66031ef71edab8b472a326d3badd6d5 541 Pfam PF00501 AMP-binding enzyme 38 442 9.2E-84 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_0907 d66031ef71edab8b472a326d3badd6d5 541 Gene3D G3DSA:3.40.50.12780 14 439 7.2E-112 T 12-10-2018 ALFP_0907 d66031ef71edab8b472a326d3badd6d5 541 Pfam PF13193 AMP-binding enzyme C-terminal domain 453 530 5.7E-20 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain ALFP_0907 d66031ef71edab8b472a326d3badd6d5 541 ProSitePatterns PS00455 Putative AMP-binding domain signature. 192 203 - T 12-10-2018 IPR020845 AMP-binding, conserved site ALFP_0907 d66031ef71edab8b472a326d3badd6d5 541 Gene3D G3DSA:3.30.300.30 440 541 3.8E-29 T 12-10-2018 ALFP_2013 8bdd1184bd8a731ef5930d98e17f78ef 260 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 257 1.9E-77 T 12-10-2018 ALFP_2013 8bdd1184bd8a731ef5930d98e17f78ef 260 SUPERFAMILY SSF56219 1 258 8.77E-81 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily ALFP_2013 8bdd1184bd8a731ef5930d98e17f78ef 260 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 250 8.9E-19 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase ALFP_2013 8bdd1184bd8a731ef5930d98e17f78ef 260 Gene3D G3DSA:3.60.10.10 1 258 1.0E-73 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily ALFP_2013 8bdd1184bd8a731ef5930d98e17f78ef 260 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 257 2.1E-75 T 12-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 ALFP_2481 d53829e241eb1a968bcea7242b190a55 861 SMART SM00981 524 622 5.4E-15 T 12-10-2018 IPR004114 THUMP domain GO:0003723 ALFP_2481 d53829e241eb1a968bcea7242b190a55 861 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 663 674 - T 12-10-2018 IPR000241 Putative RNA methylase domain ALFP_2481 d53829e241eb1a968bcea7242b190a55 861 Pfam PF02926 THUMP domain 508 621 3.9E-7 T 12-10-2018 IPR004114 THUMP domain GO:0003723 ALFP_2481 d53829e241eb1a968bcea7242b190a55 861 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 768 774 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 ALFP_2481 d53829e241eb1a968bcea7242b190a55 861 SUPERFAMILY SSF53335 617 836 2.43E-41 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_2481 d53829e241eb1a968bcea7242b190a55 861 Gene3D G3DSA:3.30.2130.30 473 719 3.6E-127 T 12-10-2018 ALFP_2481 d53829e241eb1a968bcea7242b190a55 861 Gene3D G3DSA:3.40.50.150 637 832 3.6E-127 T 12-10-2018 ALFP_2481 d53829e241eb1a968bcea7242b190a55 861 Pfam PF01170 Putative RNA methylase family UPF0020 630 833 3.6E-48 T 12-10-2018 IPR000241 Putative RNA methylase domain ALFP_0081 3d79fdce6640c9bfff91595eed039515 243 Gene3D G3DSA:3.40.50.720 3 240 1.9E-61 T 12-10-2018 ALFP_0081 3d79fdce6640c9bfff91595eed039515 243 SUPERFAMILY SSF51735 7 238 1.82E-60 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0081 3d79fdce6640c9bfff91595eed039515 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 6.6E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0081 3d79fdce6640c9bfff91595eed039515 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 162 6.6E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0081 3d79fdce6640c9bfff91595eed039515 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.6E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0081 3d79fdce6640c9bfff91595eed039515 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 200 220 6.6E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0081 3d79fdce6640c9bfff91595eed039515 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 118 134 6.6E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0081 3d79fdce6640c9bfff91595eed039515 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 181 6.6E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0081 3d79fdce6640c9bfff91595eed039515 243 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 236 1.2E-41 T 12-10-2018 ALFP_0081 3d79fdce6640c9bfff91595eed039515 243 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 130 158 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_0746 3a1cd919658d7724d418502fa7c85942 349 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 324 2.1E-102 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 ALFP_0746 3a1cd919658d7724d418502fa7c85942 349 SUPERFAMILY SSF51569 1 324 5.13E-109 T 12-10-2018 ALFP_0746 3a1cd919658d7724d418502fa7c85942 349 Pfam PF01116 Fructose-bisphosphate aldolase class-II 1 323 7.9E-99 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 ALFP_0746 3a1cd919658d7724d418502fa7c85942 349 PIRSF PIRSF001359 1 324 8.5E-86 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 ALFP_0746 3a1cd919658d7724d418502fa7c85942 349 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 134 145 - T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 ALFP_0746 3a1cd919658d7724d418502fa7c85942 349 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 68 80 - T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 ALFP_0746 3a1cd919658d7724d418502fa7c85942 349 Gene3D G3DSA:3.20.20.70 1 349 9.1E-150 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0746 3a1cd919658d7724d418502fa7c85942 349 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 1 344 1.2E-184 T 12-10-2018 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 ALFP_3214 05714c1b6d9fde5716d0ea48553e4f99 432 Pfam PF00512 His Kinase A (phospho-acceptor) domain 202 269 1.2E-18 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_3214 05714c1b6d9fde5716d0ea48553e4f99 432 SMART SM00387 313 426 4.2E-34 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_3214 05714c1b6d9fde5716d0ea48553e4f99 432 Gene3D G3DSA:1.10.287.130 195 270 4.0E-21 T 12-10-2018 ALFP_3214 05714c1b6d9fde5716d0ea48553e4f99 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 404 4.0E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3214 05714c1b6d9fde5716d0ea48553e4f99 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 351 365 4.0E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3214 05714c1b6d9fde5716d0ea48553e4f99 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 369 379 4.0E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3214 05714c1b6d9fde5716d0ea48553e4f99 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 423 4.0E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3214 05714c1b6d9fde5716d0ea48553e4f99 432 Gene3D G3DSA:3.30.565.10 272 431 1.3E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_3214 05714c1b6d9fde5716d0ea48553e4f99 432 SUPERFAMILY SSF55874 260 424 8.25E-40 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_3214 05714c1b6d9fde5716d0ea48553e4f99 432 SUPERFAMILY SSF47384 188 269 6.28E-18 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_3214 05714c1b6d9fde5716d0ea48553e4f99 432 SMART SM00388 201 270 4.4E-20 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_3214 05714c1b6d9fde5716d0ea48553e4f99 432 SUPERFAMILY SSF55785 98 194 4.36E-7 T 12-10-2018 IPR035965 PAS domain superfamily ALFP_3214 05714c1b6d9fde5716d0ea48553e4f99 432 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 315 424 9.5E-22 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_3214 05714c1b6d9fde5716d0ea48553e4f99 432 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 92 422 2.2E-116 T 12-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 ALFP_3214 05714c1b6d9fde5716d0ea48553e4f99 432 Pfam PF11808 Domain of unknown function (DUF3329) 8 84 3.2E-10 T 12-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 ALFP_1068 66ba7254dae69f5e86953d2cbccf3b90 247 Pfam PF00106 short chain dehydrogenase 6 198 5.3E-62 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1068 66ba7254dae69f5e86953d2cbccf3b90 247 Gene3D G3DSA:3.40.50.720 1 247 3.0E-79 T 12-10-2018 ALFP_1068 66ba7254dae69f5e86953d2cbccf3b90 247 SUPERFAMILY SSF51735 5 246 5.16E-77 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1068 66ba7254dae69f5e86953d2cbccf3b90 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_1068 66ba7254dae69f5e86953d2cbccf3b90 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 2.1E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1068 66ba7254dae69f5e86953d2cbccf3b90 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.1E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1068 66ba7254dae69f5e86953d2cbccf3b90 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 2.1E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1068 66ba7254dae69f5e86953d2cbccf3b90 247 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 6 246 1.4E-115 T 12-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 ALFP_1068 66ba7254dae69f5e86953d2cbccf3b90 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 190 0.0053 T 12-10-2018 ALFP_1068 66ba7254dae69f5e86953d2cbccf3b90 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 9.6E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1068 66ba7254dae69f5e86953d2cbccf3b90 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 9.6E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1068 66ba7254dae69f5e86953d2cbccf3b90 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 9.6E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1068 66ba7254dae69f5e86953d2cbccf3b90 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 9.6E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1068 66ba7254dae69f5e86953d2cbccf3b90 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 9.6E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1068 66ba7254dae69f5e86953d2cbccf3b90 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 9.6E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2971 f08a46a5a2debb1a30d77976fc4d55ec 466 Pfam PF01476 LysM domain 324 353 0.0012 T 12-10-2018 IPR018392 LysM domain ALFP_2971 f08a46a5a2debb1a30d77976fc4d55ec 466 Pfam PF01476 LysM domain 418 460 4.6E-12 T 12-10-2018 IPR018392 LysM domain ALFP_2971 f08a46a5a2debb1a30d77976fc4d55ec 466 Gene3D G3DSA:3.10.350.10 415 460 3.1E-15 T 12-10-2018 IPR036779 LysM domain superfamily ALFP_2971 f08a46a5a2debb1a30d77976fc4d55ec 466 SUPERFAMILY SSF54106 319 364 7.72E-6 T 12-10-2018 ALFP_2971 f08a46a5a2debb1a30d77976fc4d55ec 466 SUPERFAMILY SSF54106 416 460 1.57E-10 T 12-10-2018 ALFP_2971 f08a46a5a2debb1a30d77976fc4d55ec 466 Gene3D G3DSA:1.10.530.10 74 229 2.1E-32 T 12-10-2018 ALFP_2971 f08a46a5a2debb1a30d77976fc4d55ec 466 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 112 140 - T 12-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 ALFP_2971 f08a46a5a2debb1a30d77976fc4d55ec 466 SUPERFAMILY SSF53955 91 249 5.48E-42 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily ALFP_2971 f08a46a5a2debb1a30d77976fc4d55ec 466 Gene3D G3DSA:3.10.350.10 310 370 3.9E-8 T 12-10-2018 IPR036779 LysM domain superfamily ALFP_2971 f08a46a5a2debb1a30d77976fc4d55ec 466 SMART SM00257 417 460 5.4E-13 T 12-10-2018 IPR018392 LysM domain ALFP_2971 f08a46a5a2debb1a30d77976fc4d55ec 466 SMART SM00257 320 364 0.17 T 12-10-2018 IPR018392 LysM domain ALFP_2971 f08a46a5a2debb1a30d77976fc4d55ec 466 Pfam PF01464 Transglycosylase SLT domain 103 201 9.6E-24 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 ALFP_2549 d549088d7ad16ba84ac31d494096eb4d 407 SUPERFAMILY SSF53474 90 404 2.42E-31 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2549 d549088d7ad16ba84ac31d494096eb4d 407 PIRSF PIRSF020818 1 407 3.8E-195 T 12-10-2018 IPR010915 Polyhydroxyalkanoate depolymerase ALFP_2549 d549088d7ad16ba84ac31d494096eb4d 407 Gene3D G3DSA:3.40.50.1820 88 404 3.0E-6 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2549 d549088d7ad16ba84ac31d494096eb4d 407 TIGRFAM TIGR01849 PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular 2 405 1.6E-180 T 12-10-2018 IPR010915 Polyhydroxyalkanoate depolymerase ALFP_2549 d549088d7ad16ba84ac31d494096eb4d 407 Pfam PF06850 PHB de-polymerase C-terminus 205 406 1.3E-93 T 12-10-2018 IPR009656 PHB de-polymerase, C-terminal ALFP_0246 f10f2b7f4593cd09992c80c35c649346 72 SUPERFAMILY SSF50249 5 71 6.64E-24 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_0246 f10f2b7f4593cd09992c80c35c649346 72 ProSitePatterns PS00352 'Cold-shock' domain signature. 20 39 - T 12-10-2018 IPR019844 Cold-shock conserved site ALFP_0246 f10f2b7f4593cd09992c80c35c649346 72 PRINTS PR00050 Cold shock protein signature 30 39 2.0E-14 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ALFP_0246 f10f2b7f4593cd09992c80c35c649346 72 PRINTS PR00050 Cold shock protein signature 9 24 2.0E-14 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ALFP_0246 f10f2b7f4593cd09992c80c35c649346 72 PRINTS PR00050 Cold shock protein signature 45 63 2.0E-14 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ALFP_0246 f10f2b7f4593cd09992c80c35c649346 72 SMART SM00357 8 72 6.0E-27 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 ALFP_0246 f10f2b7f4593cd09992c80c35c649346 72 Gene3D G3DSA:2.40.50.140 7 71 3.0E-27 T 12-10-2018 ALFP_0246 f10f2b7f4593cd09992c80c35c649346 72 Pfam PF00313 'Cold-shock' DNA-binding domain 8 71 4.0E-27 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ALFP_0246 f10f2b7f4593cd09992c80c35c649346 72 PIRSF PIRSF002599 2 72 4.5E-23 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 ALFP_1083 89200392ffa0e7a21b309a0174b8b5c6 229 Gene3D G3DSA:1.10.3720.10 2 222 8.7E-51 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1083 89200392ffa0e7a21b309a0174b8b5c6 229 SUPERFAMILY SSF161098 8 206 2.4E-42 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1083 89200392ffa0e7a21b309a0174b8b5c6 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 220 6.5E-24 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_1083 89200392ffa0e7a21b309a0174b8b5c6 229 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 8 115 6.1E-21 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 SUPERFAMILY SSF46689 546 636 1.33E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 SUPERFAMILY SSF159800 13 192 2.09E-39 T 12-10-2018 ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 TIGRFAM TIGR02329 propionate_PrpR: propionate catabolism operon regulatory protein PrpR 14 635 1.4E-170 T 12-10-2018 IPR012704 Signal transduction response regulator, propionate catabolism, transcriptional regulator PrpR GO:0000156|GO:0000160|GO:0003677|GO:0005737|GO:0019629 ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 546 555 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 603 620 1.8E-8 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 620 637 1.8E-8 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 Gene3D G3DSA:3.40.50.300 315 501 4.1E-63 T 12-10-2018 ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 SUPERFAMILY SSF55785 200 294 2.27E-12 T 12-10-2018 IPR035965 PAS domain superfamily ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 Gene3D G3DSA:1.10.8.60 502 584 1.0E-15 T 12-10-2018 ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 SUPERFAMILY SSF52540 328 563 1.06E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 Pfam PF06506 Propionate catabolism activator 34 196 8.9E-43 T 12-10-2018 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal GO:0000156|GO:0000160|GO:0003677|GO:0005524 ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 SMART SM00382 349 494 5.2E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 Pfam PF02954 Bacterial regulatory protein, Fis family 598 636 5.5E-14 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 Gene3D G3DSA:1.10.10.60 585 637 1.8E-15 T 12-10-2018 ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 Gene3D G3DSA:3.40.50.10660 88 173 2.0E-51 T 12-10-2018 ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 Pfam PF00158 Sigma-54 interaction domain 329 495 7.6E-66 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 Gene3D G3DSA:3.40.50.2300 20 189 2.0E-51 T 12-10-2018 ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 198 256 1.1E-5 T 12-10-2018 IPR000014 PAS domain ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 Pfam PF08448 PAS fold 207 265 2.2E-7 T 12-10-2018 IPR013656 PAS fold-4 ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 SMART SM00091 201 267 2.5E-8 T 12-10-2018 IPR000014 PAS domain ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 Gene3D G3DSA:3.30.450.20 190 300 3.7E-17 T 12-10-2018 ALFP_1031 0ef0fd5487ce8b50865d3beb97562354 637 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 416 431 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 ALFP_2059 5738e2cb5ce2c87ee5ffd1fb71ba8158 220 Gene3D G3DSA:3.20.20.70 4 217 1.4E-59 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_2059 5738e2cb5ce2c87ee5ffd1fb71ba8158 220 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 5 219 35.719 T 12-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 ALFP_2059 5738e2cb5ce2c87ee5ffd1fb71ba8158 220 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 7 214 5.5E-40 T 12-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 ALFP_2059 5738e2cb5ce2c87ee5ffd1fb71ba8158 220 SUPERFAMILY SSF51366 5 216 8.0E-53 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 ALFP_3504 1bfd50e06b460632ccac6a34b044c4bd 395 Gene3D G3DSA:2.130.10.10 24 395 4.8E-70 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 ALFP_3504 1bfd50e06b460632ccac6a34b044c4bd 395 SUPERFAMILY SSF50969 62 379 7.06E-30 T 12-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like ALFP_2221 16bdc38db55ea2979457d561b0206efe 78 SUPERFAMILY SSF50182 8 70 4.15E-24 T 12-10-2018 IPR010920 LSM domain superfamily ALFP_2221 16bdc38db55ea2979457d561b0206efe 78 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 8 65 5.1E-29 T 12-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 ALFP_2221 16bdc38db55ea2979457d561b0206efe 78 Pfam PF17209 Hfq protein 8 69 4.1E-32 T 12-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 ALFP_2221 16bdc38db55ea2979457d561b0206efe 78 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 1 65 28.273 T 12-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 ALFP_2221 16bdc38db55ea2979457d561b0206efe 78 Gene3D G3DSA:2.30.30.100 1 78 9.5E-34 T 12-10-2018 ALFP_2838 16f2b55825fd1ced5849d291e271e8bd 217 SMART SM00862 134 207 8.4E-16 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_2838 16f2b55825fd1ced5849d291e271e8bd 217 Pfam PF00486 Transcriptional regulatory protein, C terminal 137 207 1.1E-16 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_2838 16f2b55825fd1ced5849d291e271e8bd 217 SMART SM00448 1 101 9.1E-20 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2838 16f2b55825fd1ced5849d291e271e8bd 217 SUPERFAMILY SSF52172 3 161 1.66E-30 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_2838 16f2b55825fd1ced5849d291e271e8bd 217 Gene3D G3DSA:1.10.10.10 108 213 3.3E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2838 16f2b55825fd1ced5849d291e271e8bd 217 Pfam PF00072 Response regulator receiver domain 5 101 6.6E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2838 16f2b55825fd1ced5849d291e271e8bd 217 Gene3D G3DSA:3.40.50.2300 1 107 8.2E-30 T 12-10-2018 ALFP_3189 6bee8e179c3e8cb39c85485e28da1692 318 SUPERFAMILY SSF53807 64 310 3.49E-40 T 12-10-2018 ALFP_3189 6bee8e179c3e8cb39c85485e28da1692 318 Pfam PF01497 Periplasmic binding protein 68 261 6.6E-15 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain ALFP_3189 6bee8e179c3e8cb39c85485e28da1692 318 Gene3D G3DSA:3.40.50.1980 63 181 7.6E-29 T 12-10-2018 ALFP_3189 6bee8e179c3e8cb39c85485e28da1692 318 Gene3D G3DSA:3.40.50.1980 185 312 3.4E-19 T 12-10-2018 ALFP_2327 a75aa4f5b787ca51f490a7c33ab9a138 231 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 90 179 6.6E-9 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 ALFP_2327 a75aa4f5b787ca51f490a7c33ab9a138 231 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 184 1.5E-37 T 12-10-2018 ALFP_2327 a75aa4f5b787ca51f490a7c33ab9a138 231 SUPERFAMILY SSF56784 1 217 6.43E-56 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_2327 a75aa4f5b787ca51f490a7c33ab9a138 231 Gene3D G3DSA:3.40.50.1000 5 190 5.0E-56 T 12-10-2018 IPR023214 HAD superfamily ALFP_2327 a75aa4f5b787ca51f490a7c33ab9a138 231 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 5 210 8.9E-60 T 12-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 ALFP_2327 a75aa4f5b787ca51f490a7c33ab9a138 231 Gene3D G3DSA:1.10.150.240 17 84 5.0E-56 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 ALFP_2327 a75aa4f5b787ca51f490a7c33ab9a138 231 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 72 183 2.3E-10 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 ALFP_2865 092d07c2a1e9422460966c29117266b5 245 SUPERFAMILY SSF52402 19 198 8.37E-39 T 12-10-2018 ALFP_2865 092d07c2a1e9422460966c29117266b5 245 PIRSF PIRSF000857 7 241 2.1E-76 T 12-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 ALFP_2865 092d07c2a1e9422460966c29117266b5 245 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 37 210 5.8E-38 T 12-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 ALFP_2865 092d07c2a1e9422460966c29117266b5 245 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 41 234 7.1E-76 T 12-10-2018 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 ALFP_2865 092d07c2a1e9422460966c29117266b5 245 Gene3D G3DSA:3.40.50.620 10 243 9.4E-61 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_2664 866cd94d7422945f3c3cc8f266778d47 240 Pfam PF00392 Bacterial regulatory proteins, gntR family 35 92 1.7E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2664 866cd94d7422945f3c3cc8f266778d47 240 SMART SM00895 103 227 5.7E-6 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_2664 866cd94d7422945f3c3cc8f266778d47 240 Pfam PF07729 FCD domain 104 221 2.8E-13 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_2664 866cd94d7422945f3c3cc8f266778d47 240 SMART SM00345 35 93 1.1E-12 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2664 866cd94d7422945f3c3cc8f266778d47 240 Gene3D G3DSA:1.10.10.10 28 95 3.2E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2664 866cd94d7422945f3c3cc8f266778d47 240 SUPERFAMILY SSF46785 28 117 9.07E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2664 866cd94d7422945f3c3cc8f266778d47 240 SUPERFAMILY SSF48008 104 231 4.18E-12 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_2664 866cd94d7422945f3c3cc8f266778d47 240 Gene3D G3DSA:1.20.120.530 102 230 3.3E-12 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_3046 e36e4b98643df6f331d3674f19c96bfe 333 Gene3D G3DSA:3.30.450.90 11 112 1.3E-23 T 12-10-2018 ALFP_3046 e36e4b98643df6f331d3674f19c96bfe 333 Gene3D G3DSA:3.40.50.300 115 331 9.0E-61 T 12-10-2018 ALFP_3046 e36e4b98643df6f331d3674f19c96bfe 333 TIGRFAM TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 21 324 8.0E-91 T 12-10-2018 IPR014155 Type IV secretion system protein VirB11 GO:0043684|GO:0044097 ALFP_3046 e36e4b98643df6f331d3674f19c96bfe 333 SUPERFAMILY SSF52540 11 313 1.7E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3046 e36e4b98643df6f331d3674f19c96bfe 333 Pfam PF00437 Type II/IV secretion system protein 17 311 1.3E-48 T 12-10-2018 IPR001482 Type II/IV secretion system protein ALFP_3561 9f3e1a7eda1adbc1e9935562e933eaec 347 Gene3D G3DSA:3.30.530.90 132 345 2.3E-49 T 12-10-2018 ALFP_3561 9f3e1a7eda1adbc1e9935562e933eaec 347 Pfam PF00355 Rieske [2Fe-2S] domain 14 90 8.0E-17 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ALFP_3561 9f3e1a7eda1adbc1e9935562e933eaec 347 SUPERFAMILY SSF50022 2 112 5.5E-31 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_3561 9f3e1a7eda1adbc1e9935562e933eaec 347 Gene3D G3DSA:2.102.10.10 3 131 4.8E-37 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_3561 9f3e1a7eda1adbc1e9935562e933eaec 347 SUPERFAMILY SSF55961 103 339 2.86E-42 T 12-10-2018 ALFP_0022 6edccdf6136eab39b62e07a572171db6 382 PIRSF PIRSF016578 10 83 7.7E-6 T 12-10-2018 ALFP_0022 6edccdf6136eab39b62e07a572171db6 382 PIRSF PIRSF016578 219 382 2.7E-11 T 12-10-2018 ALFP_0022 6edccdf6136eab39b62e07a572171db6 382 Gene3D G3DSA:2.40.110.10 120 229 7.2E-119 T 12-10-2018 ALFP_0022 6edccdf6136eab39b62e07a572171db6 382 SUPERFAMILY SSF47203 229 380 4.19E-49 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 ALFP_0022 6edccdf6136eab39b62e07a572171db6 382 Gene3D G3DSA:1.20.140.10 230 375 7.2E-119 T 12-10-2018 ALFP_0022 6edccdf6136eab39b62e07a572171db6 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 ALFP_0022 6edccdf6136eab39b62e07a572171db6 382 Gene3D G3DSA:1.10.540.10 5 119 7.2E-119 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 ALFP_0022 6edccdf6136eab39b62e07a572171db6 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 378 1.2E-46 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 ALFP_0022 6edccdf6136eab39b62e07a572171db6 382 SUPERFAMILY SSF56645 9 241 3.01E-72 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 ALFP_0022 6edccdf6136eab39b62e07a572171db6 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 217 1.8E-25 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 ALFP_0022 6edccdf6136eab39b62e07a572171db6 382 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 ALFP_0022 6edccdf6136eab39b62e07a572171db6 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 117 2.9E-25 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 ALFP_1263 b9228fad167e808c506ef535448719b2 310 PIRSF PIRSF017082 12 309 2.6E-55 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_1263 b9228fad167e808c506ef535448719b2 310 Gene3D G3DSA:3.40.190.10 115 235 6.2E-71 T 12-10-2018 ALFP_1263 b9228fad167e808c506ef535448719b2 310 SUPERFAMILY SSF53850 102 264 4.04E-12 T 12-10-2018 ALFP_1263 b9228fad167e808c506ef535448719b2 310 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 36 307 3.8E-51 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_1263 b9228fad167e808c506ef535448719b2 310 Gene3D G3DSA:3.40.190.150 19 299 6.2E-71 T 12-10-2018 ALFP_1712 6e86d035d087861973934a7c47335455 134 Pfam PF13411 MerR HTH family regulatory protein 19 85 2.9E-20 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1712 6e86d035d087861973934a7c47335455 134 Gene3D G3DSA:1.10.1660.10 13 132 1.5E-19 T 12-10-2018 ALFP_1712 6e86d035d087861973934a7c47335455 134 SMART SM00422 19 89 3.3E-5 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1712 6e86d035d087861973934a7c47335455 134 SUPERFAMILY SSF46955 17 123 4.58E-18 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily ALFP_0957 226c4e46e6d9b67ab5c6abd6206c0004 277 Pfam PF00924 Mechanosensitive ion channel 66 259 1.8E-48 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 ALFP_0957 226c4e46e6d9b67ab5c6abd6206c0004 277 SUPERFAMILY SSF50182 104 171 3.14E-13 T 12-10-2018 IPR010920 LSM domain superfamily ALFP_0957 226c4e46e6d9b67ab5c6abd6206c0004 277 Gene3D G3DSA:2.30.30.60 120 170 3.5E-11 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily ALFP_0957 226c4e46e6d9b67ab5c6abd6206c0004 277 SUPERFAMILY SSF82861 19 103 1.7E-16 T 12-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 ALFP_0957 226c4e46e6d9b67ab5c6abd6206c0004 277 Gene3D G3DSA:3.30.70.100 171 264 1.1E-21 T 12-10-2018 ALFP_0957 226c4e46e6d9b67ab5c6abd6206c0004 277 SUPERFAMILY SSF82689 172 268 2.22E-27 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 ALFP_3063 d74fe431b585ea4e312c3895bbb6d75e 405 Gene3D G3DSA:1.10.443.10 183 379 1.3E-37 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 ALFP_3063 d74fe431b585ea4e312c3895bbb6d75e 405 Gene3D G3DSA:1.10.150.130 80 182 1.7E-18 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal ALFP_3063 d74fe431b585ea4e312c3895bbb6d75e 405 SUPERFAMILY SSF56349 84 367 1.0E-48 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 ALFP_3063 d74fe431b585ea4e312c3895bbb6d75e 405 Pfam PF12167 Arm DNA-binding domain 7 68 1.3E-23 T 12-10-2018 IPR022000 Min27-like integrase, DNA-binding domain ALFP_3063 d74fe431b585ea4e312c3895bbb6d75e 405 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 84 137 4.2E-7 T 12-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 ALFP_3063 d74fe431b585ea4e312c3895bbb6d75e 405 Pfam PF00589 Phage integrase family 195 362 1.4E-18 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 ALFP_0497 4c0916fa6bb1ca472313a66c9b2bfc28 142 Gene3D G3DSA:3.30.530.20 5 141 1.8E-12 T 12-10-2018 IPR023393 START-like domain superfamily ALFP_0638 2ad37d7503c0439b2e1406fd8fe49edf 222 PIRSF PIRSF002764 1 222 3.5E-73 T 12-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria ALFP_0638 2ad37d7503c0439b2e1406fd8fe49edf 222 Pfam PF03379 CcmB protein 6 218 3.5E-68 T 12-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0638 2ad37d7503c0439b2e1406fd8fe49edf 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 78 101 1.5E-53 T 12-10-2018 ALFP_0638 2ad37d7503c0439b2e1406fd8fe49edf 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 134 157 1.5E-53 T 12-10-2018 ALFP_0638 2ad37d7503c0439b2e1406fd8fe49edf 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 103 121 1.5E-53 T 12-10-2018 ALFP_0638 2ad37d7503c0439b2e1406fd8fe49edf 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 29 50 1.5E-53 T 12-10-2018 ALFP_0638 2ad37d7503c0439b2e1406fd8fe49edf 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 55 72 1.5E-53 T 12-10-2018 ALFP_0638 2ad37d7503c0439b2e1406fd8fe49edf 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 195 218 1.5E-53 T 12-10-2018 ALFP_0638 2ad37d7503c0439b2e1406fd8fe49edf 222 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 8 218 2.7E-68 T 12-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria ALFP_3053 e379c00971709deb60f724cf4057e294 974 SUPERFAMILY SSF52540 424 617 5.41E-18 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3053 e379c00971709deb60f724cf4057e294 974 Pfam PF13604 AAA domain 479 663 1.9E-42 T 12-10-2018 ALFP_3053 e379c00971709deb60f724cf4057e294 974 TIGRFAM TIGR02686 relax_trwC: conjugative relaxase domain 17 297 5.9E-76 T 12-10-2018 IPR014059 Conjugative relaxase, N-terminal ALFP_3053 e379c00971709deb60f724cf4057e294 974 Pfam PF08751 TrwC relaxase 13 292 1.6E-74 T 12-10-2018 IPR014862 TrwC relaxase ALFP_3053 e379c00971709deb60f724cf4057e294 974 Gene3D G3DSA:3.40.50.300 446 650 7.7E-31 T 12-10-2018 ALFP_3053 e379c00971709deb60f724cf4057e294 974 SUPERFAMILY SSF55464 3 297 1.28E-73 T 12-10-2018 ALFP_3053 e379c00971709deb60f724cf4057e294 974 Gene3D G3DSA:3.40.50.300 769 939 1.1E-7 T 12-10-2018 ALFP_3053 e379c00971709deb60f724cf4057e294 974 SUPERFAMILY SSF52540 588 937 2.18E-29 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0795 11b3d7b92a5623d96c7f925a2ae2d1ed 316 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 248 276 - T 12-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_0795 11b3d7b92a5623d96c7f925a2ae2d1ed 316 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 66 77 - T 12-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_0795 11b3d7b92a5623d96c7f925a2ae2d1ed 316 SUPERFAMILY SSF56059 99 307 6.73E-58 T 12-10-2018 ALFP_0795 11b3d7b92a5623d96c7f925a2ae2d1ed 316 Gene3D G3DSA:3.30.470.20 88 300 4.0E-71 T 12-10-2018 ALFP_0795 11b3d7b92a5623d96c7f925a2ae2d1ed 316 Gene3D G3DSA:3.40.50.20 1 87 2.5E-30 T 12-10-2018 ALFP_0795 11b3d7b92a5623d96c7f925a2ae2d1ed 316 PIRSF PIRSF039102 5 56 4.6E-9 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_0795 11b3d7b92a5623d96c7f925a2ae2d1ed 316 PIRSF PIRSF039102 47 312 1.2E-83 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_0795 11b3d7b92a5623d96c7f925a2ae2d1ed 316 Pfam PF07478 D-ala D-ala ligase C-terminus 107 302 1.3E-55 T 12-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_0795 11b3d7b92a5623d96c7f925a2ae2d1ed 316 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 7 305 3.2E-98 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_0795 11b3d7b92a5623d96c7f925a2ae2d1ed 316 Pfam PF01820 D-ala D-ala ligase N-terminus 7 89 6.8E-20 T 12-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_0795 11b3d7b92a5623d96c7f925a2ae2d1ed 316 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 6 306 35.149 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_0795 11b3d7b92a5623d96c7f925a2ae2d1ed 316 Gene3D G3DSA:3.30.1490.20 114 179 4.0E-71 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 ALFP_0795 11b3d7b92a5623d96c7f925a2ae2d1ed 316 SUPERFAMILY SSF52440 7 99 4.22E-31 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily ALFP_2296 ccddab8a7b01826a9416cfd4414c64db 181 Pfam PF00929 Exonuclease 9 170 5.9E-33 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III ALFP_2296 ccddab8a7b01826a9416cfd4414c64db 181 SMART SM00479 7 180 2.6E-26 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III ALFP_2296 ccddab8a7b01826a9416cfd4414c64db 181 SUPERFAMILY SSF53098 3 180 1.9E-47 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily ALFP_2296 ccddab8a7b01826a9416cfd4414c64db 181 Gene3D G3DSA:3.30.420.10 2 180 5.7E-71 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 ALFP_2296 ccddab8a7b01826a9416cfd4414c64db 181 Hamap MF_00045 Oligoribonuclease [orn]. 3 181 42.384 T 12-10-2018 IPR022894 Oligoribonuclease GO:0000175 ALFP_2601 6754767edfe210debfaa9dfc9d5f0680 163 SUPERFAMILY SSF55021 79 162 1.22E-25 T 12-10-2018 ALFP_2601 6754767edfe210debfaa9dfc9d5f0680 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 158 4.4E-64 T 12-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 ALFP_2601 6754767edfe210debfaa9dfc9d5f0680 163 Gene3D G3DSA:3.30.70.260 1 78 2.0E-35 T 12-10-2018 ALFP_2601 6754767edfe210debfaa9dfc9d5f0680 163 Pfam PF13710 ACT domain 12 73 3.0E-16 T 12-10-2018 ALFP_2601 6754767edfe210debfaa9dfc9d5f0680 163 Pfam PF10369 Small subunit of acetolactate synthase 84 157 1.2E-26 T 12-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 ALFP_2601 6754767edfe210debfaa9dfc9d5f0680 163 Gene3D G3DSA:3.30.70.1150 83 163 7.4E-30 T 12-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal ALFP_2601 6754767edfe210debfaa9dfc9d5f0680 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 1.0E-33 T 12-10-2018 ALFP_2601 6754767edfe210debfaa9dfc9d5f0680 163 SUPERFAMILY SSF55021 1 76 1.75E-22 T 12-10-2018 ALFP_1995 76b3061cf0a6c79b98eaa1db06fd65cc 189 PIRSF PIRSF000232 1 189 1.3E-51 T 12-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like ALFP_1995 76b3061cf0a6c79b98eaa1db06fd65cc 189 Gene3D G3DSA:3.40.109.10 4 166 1.8E-34 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 ALFP_1995 76b3061cf0a6c79b98eaa1db06fd65cc 189 Pfam PF00881 Nitroreductase family 8 165 2.1E-22 T 12-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 ALFP_1995 76b3061cf0a6c79b98eaa1db06fd65cc 189 SUPERFAMILY SSF55469 1 185 1.7E-33 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 ALFP_0057 903c20306b25416ea4291306fe3d4cfe 407 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 13 193 1.3E-43 T 12-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain ALFP_0057 903c20306b25416ea4291306fe3d4cfe 407 SUPERFAMILY SSF90002 306 396 2.48E-14 T 12-10-2018 ALFP_0057 903c20306b25416ea4291306fe3d4cfe 407 SMART SM00833 306 397 0.0054 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal ALFP_0057 903c20306b25416ea4291306fe3d4cfe 407 SUPERFAMILY SSF52540 11 192 1.12E-31 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0057 903c20306b25416ea4291306fe3d4cfe 407 Gene3D G3DSA:3.30.1220.10 290 400 4.3E-14 T 12-10-2018 IPR036627 CobW-like, C-terminal domain superfamily ALFP_0057 903c20306b25416ea4291306fe3d4cfe 407 Gene3D G3DSA:3.40.50.300 10 211 1.3E-55 T 12-10-2018 ALFP_0057 903c20306b25416ea4291306fe3d4cfe 407 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 308 397 1.4E-12 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal ALFP_0237 b4e281efb0fd42cd9900e725fc0d8676 451 Gene3D G3DSA:3.90.1300.10 3 446 6.2E-127 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_0237 b4e281efb0fd42cd9900e725fc0d8676 451 SUPERFAMILY SSF75304 3 449 1.7E-119 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_0237 b4e281efb0fd42cd9900e725fc0d8676 451 Pfam PF01425 Amidase 21 436 4.6E-86 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_0237 b4e281efb0fd42cd9900e725fc0d8676 451 ProSitePatterns PS00571 Amidases signature. 153 184 - T 12-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 ALFP_1315 3f6ebcafd73476a5c0ae52ff1c7bf058 328 PIRSF PIRSF018266 4 328 2.9E-86 T 12-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component ALFP_1315 3f6ebcafd73476a5c0ae52ff1c7bf058 328 Gene3D G3DSA:2.60.120.1440 107 251 8.0E-29 T 12-10-2018 ALFP_1315 3f6ebcafd73476a5c0ae52ff1c7bf058 328 Gene3D G3DSA:3.55.50.30 252 325 3.7E-7 T 12-10-2018 ALFP_1315 3f6ebcafd73476a5c0ae52ff1c7bf058 328 Pfam PF16220 Domain of unknown function (DUF4880) 16 55 1.2E-14 T 12-10-2018 IPR032623 FecR, N-terminal ALFP_1315 3f6ebcafd73476a5c0ae52ff1c7bf058 328 Pfam PF04773 FecR protein 119 210 1.5E-22 T 12-10-2018 IPR006860 FecR protein ALFP_1315 3f6ebcafd73476a5c0ae52ff1c7bf058 328 Pfam PF16344 Domain of unknown function (DUF4974) 227 316 9.8E-9 T 12-10-2018 IPR032508 Protein FecR, C-terminal ALFP_0151 dcf1b4294659e407e47a4115d36c3e45 564 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 40 56 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 ALFP_0151 dcf1b4294659e407e47a4115d36c3e45 564 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 243 256 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 ALFP_0151 dcf1b4294659e407e47a4115d36c3e45 564 Pfam PF00682 HMGL-like 33 311 1.3E-77 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 ALFP_0151 dcf1b4294659e407e47a4115d36c3e45 564 Gene3D G3DSA:3.20.20.70 14 376 1.3E-155 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0151 dcf1b4294659e407e47a4115d36c3e45 564 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 5 552 5.1E-243 T 12-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 ALFP_0151 dcf1b4294659e407e47a4115d36c3e45 564 SUPERFAMILY SSF51569 22 330 7.14E-100 T 12-10-2018 ALFP_0151 dcf1b4294659e407e47a4115d36c3e45 564 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 6 554 53.127 T 12-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 ALFP_0151 dcf1b4294659e407e47a4115d36c3e45 564 SUPERFAMILY SSF110921 451 551 1.26E-30 T 12-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 ALFP_0151 dcf1b4294659e407e47a4115d36c3e45 564 Pfam PF08502 LeuA allosteric (dimerisation) domain 422 551 3.0E-27 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 ALFP_0151 dcf1b4294659e407e47a4115d36c3e45 564 Gene3D G3DSA:3.30.160.270 377 552 3.4E-57 T 12-10-2018 ALFP_0151 dcf1b4294659e407e47a4115d36c3e45 564 SUPERFAMILY SSF89000 388 438 3.92E-15 T 12-10-2018 ALFP_0151 dcf1b4294659e407e47a4115d36c3e45 564 SMART SM00917 422 553 1.0E-27 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 ALFP_1745 a3be7dd70f505166c98e9e21dee84a9f 510 Pfam PF07171 MlrC C-terminus 304 481 6.1E-53 T 12-10-2018 IPR010799 Microcystin LR degradation protein MlrC, C-terminal ALFP_1745 a3be7dd70f505166c98e9e21dee84a9f 510 Pfam PF07364 Metallopeptidase family M81 2 293 9.0E-101 T 12-10-2018 IPR015995 Microcystin LR degradation protein MlrC, N-terminal ALFP_1745 a3be7dd70f505166c98e9e21dee84a9f 510 PIRSF PIRSF012702 1 498 2.2E-168 T 12-10-2018 IPR009197 Microcystin LR degradation protein MlrC ALFP_3394 46fd2fe7959f9657d68270c67865fa41 543 SUPERFAMILY SSF56112 12 165 6.28E-9 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily ALFP_3394 46fd2fe7959f9657d68270c67865fa41 543 Pfam PF08308 PEGA domain 488 542 3.1E-6 T 12-10-2018 IPR013229 PEGA ALFP_3394 46fd2fe7959f9657d68270c67865fa41 543 Gene3D G3DSA:1.10.510.10 7 185 7.5E-6 T 12-10-2018 ALFP_0040 54023dfb00131e9ea1b5f7c57c110545 535 Pfam PF00005 ABC transporter 310 455 5.3E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0040 54023dfb00131e9ea1b5f7c57c110545 535 SUPERFAMILY SSF52540 5 250 4.22E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0040 54023dfb00131e9ea1b5f7c57c110545 535 SMART SM00382 29 227 5.7E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0040 54023dfb00131e9ea1b5f7c57c110545 535 SMART SM00382 319 504 4.9E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0040 54023dfb00131e9ea1b5f7c57c110545 535 Pfam PF00005 ABC transporter 21 179 8.6E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0040 54023dfb00131e9ea1b5f7c57c110545 535 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 228 250 1.3E-9 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal ALFP_0040 54023dfb00131e9ea1b5f7c57c110545 535 SUPERFAMILY SSF52540 293 526 2.36E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0040 54023dfb00131e9ea1b5f7c57c110545 535 Gene3D G3DSA:3.40.50.300 291 528 6.2E-62 T 12-10-2018 ALFP_0040 54023dfb00131e9ea1b5f7c57c110545 535 Gene3D G3DSA:3.40.50.300 2 252 1.1E-53 T 12-10-2018 ALFP_2122 7abc4be8fb868c657ff9f5d700977ffe 1969 Pfam PF00207 Alpha-2-macroglobulin family 1268 1355 1.1E-12 T 12-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 ALFP_2122 7abc4be8fb868c657ff9f5d700977ffe 1969 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 530 644 4.2E-27 T 12-10-2018 ALFP_2122 7abc4be8fb868c657ff9f5d700977ffe 1969 SMART SM01359 1025 1208 1.7E-37 T 12-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 ALFP_2122 7abc4be8fb868c657ff9f5d700977ffe 1969 SMART SM01360 1266 1356 3.6E-21 T 12-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 ALFP_2122 7abc4be8fb868c657ff9f5d700977ffe 1969 Pfam PF01835 MG2 domain 652 751 5.4E-14 T 12-10-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 ALFP_2122 7abc4be8fb868c657ff9f5d700977ffe 1969 SUPERFAMILY SSF48239 1494 1747 1.73E-8 T 12-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid ALFP_2122 7abc4be8fb868c657ff9f5d700977ffe 1969 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 1025 1208 3.5E-20 T 12-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 ALFP_2145 9635fb471492dafd78d937e0c746f0d5 290 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 27 276 8.6E-94 T 12-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 ALFP_2145 9635fb471492dafd78d937e0c746f0d5 290 Gene3D G3DSA:1.10.3720.10 26 286 1.8E-59 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2145 9635fb471492dafd78d937e0c746f0d5 290 SUPERFAMILY SSF161098 26 278 5.63E-51 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2145 9635fb471492dafd78d937e0c746f0d5 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 283 3.0E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_2145 9635fb471492dafd78d937e0c746f0d5 290 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 25 283 8.7E-119 T 12-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 ALFP_0816 1afb64278137f76d55ad7ee287ffce25 242 PIRSF PIRSF039085 1 242 7.1E-109 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 ALFP_0816 1afb64278137f76d55ad7ee287ffce25 242 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0816 1afb64278137f76d55ad7ee287ffce25 242 SUPERFAMILY SSF52540 3 237 2.54E-79 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0816 1afb64278137f76d55ad7ee287ffce25 242 Pfam PF00005 ABC transporter 19 167 3.3E-36 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0816 1afb64278137f76d55ad7ee287ffce25 242 SMART SM00382 28 215 1.3E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0816 1afb64278137f76d55ad7ee287ffce25 242 Gene3D G3DSA:3.40.50.300 2 242 9.9E-80 T 12-10-2018 ALFP_3010 66600c2d0766f8446d5e9805100bdeb6 340 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 151 172 - T 12-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 ALFP_3010 66600c2d0766f8446d5e9805100bdeb6 340 SUPERFAMILY SSF51735 118 287 9.97E-36 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3010 66600c2d0766f8446d5e9805100bdeb6 340 Gene3D G3DSA:3.40.50.720 129 274 1.5E-103 T 12-10-2018 ALFP_3010 66600c2d0766f8446d5e9805100bdeb6 340 SMART SM00829 13 335 1.2E-11 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 ALFP_3010 66600c2d0766f8446d5e9805100bdeb6 340 SUPERFAMILY SSF50129 12 147 1.34E-31 T 12-10-2018 IPR011032 GroES-like superfamily ALFP_3010 66600c2d0766f8446d5e9805100bdeb6 340 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 91 2.1E-5 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ALFP_3010 66600c2d0766f8446d5e9805100bdeb6 340 Gene3D G3DSA:3.90.180.10 22 335 1.5E-103 T 12-10-2018 ALFP_3010 66600c2d0766f8446d5e9805100bdeb6 340 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 338 6.9E-169 T 12-10-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 ALFP_3010 66600c2d0766f8446d5e9805100bdeb6 340 Pfam PF13602 Zinc-binding dehydrogenase 195 335 5.2E-22 T 12-10-2018 ALFP_2232 ba65281db3ddf08994180669da0a0db3 252 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 252 106.825 T 12-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 ALFP_2232 ba65281db3ddf08994180669da0a0db3 252 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 224 2.1E-58 T 12-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 ALFP_2232 ba65281db3ddf08994180669da0a0db3 252 SUPERFAMILY SSF75217 1 235 7.19E-94 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases ALFP_2232 ba65281db3ddf08994180669da0a0db3 252 Gene3D G3DSA:1.10.1270.20 172 251 1.6E-28 T 12-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 ALFP_2232 ba65281db3ddf08994180669da0a0db3 252 PIRSF PIRSF000386 1 249 1.2E-92 T 12-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 ALFP_2232 ba65281db3ddf08994180669da0a0db3 252 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 233 8.8E-88 T 12-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 ALFP_2232 ba65281db3ddf08994180669da0a0db3 252 Gene3D G3DSA:3.40.1280.10 1 171 2.1E-64 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal ALFP_0004 0079c82799f548108c2ec4ab8d323905 233 Pfam PF01479 S4 domain 1 47 2.6E-8 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_0004 0079c82799f548108c2ec4ab8d323905 233 Pfam PF00849 RNA pseudouridylate synthase 61 191 1.5E-17 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_0004 0079c82799f548108c2ec4ab8d323905 233 SUPERFAMILY SSF55120 60 226 1.53E-43 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_0004 0079c82799f548108c2ec4ab8d323905 233 Gene3D G3DSA:3.10.290.10 1 56 4.5E-18 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 ALFP_0004 0079c82799f548108c2ec4ab8d323905 233 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 98 112 - T 12-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 ALFP_0004 0079c82799f548108c2ec4ab8d323905 233 SUPERFAMILY SSF55174 1 55 1.61E-13 T 12-10-2018 ALFP_0004 0079c82799f548108c2ec4ab8d323905 233 SMART SM00363 1 62 6.5E-11 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_0004 0079c82799f548108c2ec4ab8d323905 233 Gene3D G3DSA:3.30.70.1560 127 208 3.9E-55 T 12-10-2018 ALFP_0004 0079c82799f548108c2ec4ab8d323905 233 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 65 222 3.0E-41 T 12-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 ALFP_0004 0079c82799f548108c2ec4ab8d323905 233 Gene3D G3DSA:3.30.70.580 61 226 3.9E-55 T 12-10-2018 ALFP_0754 151b071b73da8e130df8a8a99ecf76f8 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0754 151b071b73da8e130df8a8a99ecf76f8 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0754 151b071b73da8e130df8a8a99ecf76f8 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0754 151b071b73da8e130df8a8a99ecf76f8 293 SUPERFAMILY SSF46785 5 81 8.18E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0754 151b071b73da8e130df8a8a99ecf76f8 293 SUPERFAMILY SSF53850 94 290 7.24E-30 T 12-10-2018 ALFP_0754 151b071b73da8e130df8a8a99ecf76f8 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 5.7E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0754 151b071b73da8e130df8a8a99ecf76f8 293 Gene3D G3DSA:3.40.190.10 104 285 4.0E-45 T 12-10-2018 ALFP_0754 151b071b73da8e130df8a8a99ecf76f8 293 Pfam PF03466 LysR substrate binding domain 91 288 7.3E-29 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0754 151b071b73da8e130df8a8a99ecf76f8 293 Gene3D G3DSA:1.10.10.10 7 87 4.4E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0754 151b071b73da8e130df8a8a99ecf76f8 293 Gene3D G3DSA:3.40.190.10 164 258 4.0E-45 T 12-10-2018 ALFP_1201 fcc95e5b818f2bb1be3b468cea95f13f 138 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site ALFP_1201 fcc95e5b818f2bb1be3b468cea95f13f 138 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 8 137 4.9E-36 T 12-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 ALFP_1201 fcc95e5b818f2bb1be3b468cea95f13f 138 Pfam PF00460 Flagella basal body rod protein 13 39 1.3E-9 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 ALFP_1201 fcc95e5b818f2bb1be3b468cea95f13f 138 PIRSF PIRSF002889 1 138 4.7E-41 T 12-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 ALFP_2200 67c3290ff5075d7d39930b60be5d6c35 254 Pfam PF02311 AraC-like ligand binding domain 26 97 1.7E-6 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 ALFP_2200 67c3290ff5075d7d39930b60be5d6c35 254 SUPERFAMILY SSF51182 4 180 2.08E-13 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_2200 67c3290ff5075d7d39930b60be5d6c35 254 SUPERFAMILY SSF46689 206 250 2.2E-6 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2200 67c3290ff5075d7d39930b60be5d6c35 254 Pfam PF12833 Helix-turn-helix domain 172 249 4.0E-19 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_2200 67c3290ff5075d7d39930b60be5d6c35 254 Gene3D G3DSA:1.10.10.60 146 253 6.3E-20 T 12-10-2018 ALFP_2200 67c3290ff5075d7d39930b60be5d6c35 254 Gene3D G3DSA:2.60.120.10 12 88 1.0E-6 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_2200 67c3290ff5075d7d39930b60be5d6c35 254 SMART SM00342 166 248 1.1E-17 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_3308 7c6d4e42ec5fd199417a28fe94e86538 359 Gene3D G3DSA:3.30.160.20 210 297 1.2E-97 T 12-10-2018 ALFP_3308 7c6d4e42ec5fd199417a28fe94e86538 359 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 357 1.6E-160 T 12-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 ALFP_3308 7c6d4e42ec5fd199417a28fe94e86538 359 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 41.318 T 12-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 ALFP_3308 7c6d4e42ec5fd199417a28fe94e86538 359 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 ALFP_3308 7c6d4e42ec5fd199417a28fe94e86538 359 SUPERFAMILY SSF75620 12 352 7.06E-136 T 12-10-2018 ALFP_3308 7c6d4e42ec5fd199417a28fe94e86538 359 Pfam PF03462 PCRF domain 13 203 9.1E-73 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 ALFP_3308 7c6d4e42ec5fd199417a28fe94e86538 359 Pfam PF00472 RF-1 domain 214 321 6.5E-43 T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 ALFP_3308 7c6d4e42ec5fd199417a28fe94e86538 359 Gene3D G3DSA:3.30.70.1660 111 342 1.2E-97 T 12-10-2018 ALFP_3308 7c6d4e42ec5fd199417a28fe94e86538 359 SMART SM00937 63 178 4.9E-64 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 ALFP_2220 afb4ea8b429478ce263ed5e97ac5e96f 368 Hamap MF_00900 GTPase HflX [hflX]. 25 367 46.334 T 12-10-2018 IPR016496 GTPase HflX GO:0005525 ALFP_2220 afb4ea8b429478ce263ed5e97ac5e96f 368 Pfam PF16360 GTP-binding GTPase Middle Region 112 190 5.8E-30 T 12-10-2018 IPR032305 GTP-binding protein, middle domain ALFP_2220 afb4ea8b429478ce263ed5e97ac5e96f 368 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 219 237 1.0E-8 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_2220 afb4ea8b429478ce263ed5e97ac5e96f 368 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 265 283 1.0E-8 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_2220 afb4ea8b429478ce263ed5e97ac5e96f 368 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 198 218 1.0E-8 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_2220 afb4ea8b429478ce263ed5e97ac5e96f 368 Pfam PF01926 50S ribosome-binding GTPase 198 316 4.1E-21 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_2220 afb4ea8b429478ce263ed5e97ac5e96f 368 SUPERFAMILY SSF52540 196 356 6.51E-40 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2220 afb4ea8b429478ce263ed5e97ac5e96f 368 Gene3D G3DSA:3.40.50.300 197 361 1.4E-39 T 12-10-2018 ALFP_2220 afb4ea8b429478ce263ed5e97ac5e96f 368 PIRSF PIRSF006809 3 366 2.5E-135 T 12-10-2018 IPR016496 GTPase HflX GO:0005525 ALFP_2220 afb4ea8b429478ce263ed5e97ac5e96f 368 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 8 356 1.4E-147 T 12-10-2018 IPR016496 GTPase HflX GO:0005525 ALFP_2220 afb4ea8b429478ce263ed5e97ac5e96f 368 Pfam PF13167 GTP-binding GTPase N-terminal 24 110 1.9E-29 T 12-10-2018 IPR025121 GTPase HflX, N-terminal ALFP_2220 afb4ea8b429478ce263ed5e97ac5e96f 368 Gene3D G3DSA:3.40.50.11060 15 136 1.9E-36 T 12-10-2018 ALFP_2064 35832c74774532c46d44bb4e3d40fee4 374 SUPERFAMILY SSF55347 135 358 1.57E-73 T 12-10-2018 ALFP_2064 35832c74774532c46d44bb4e3d40fee4 374 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 145 357 2.2E-54 T 12-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 ALFP_2064 35832c74774532c46d44bb4e3d40fee4 374 SMART SM00859 4 123 8.7E-24 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 ALFP_2064 35832c74774532c46d44bb4e3d40fee4 374 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 4 369 5.2E-182 T 12-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 ALFP_2064 35832c74774532c46d44bb4e3d40fee4 374 PIRSF PIRSF000148 2 374 7.1E-62 T 12-10-2018 ALFP_2064 35832c74774532c46d44bb4e3d40fee4 374 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 265 279 - T 12-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 ALFP_2064 35832c74774532c46d44bb4e3d40fee4 374 Gene3D G3DSA:3.30.360.10 140 354 4.3E-82 T 12-10-2018 ALFP_2064 35832c74774532c46d44bb4e3d40fee4 374 Gene3D G3DSA:3.40.50.720 1 139 5.3E-56 T 12-10-2018 ALFP_2064 35832c74774532c46d44bb4e3d40fee4 374 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 122 3.3E-21 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 ALFP_2064 35832c74774532c46d44bb4e3d40fee4 374 SUPERFAMILY SSF51735 4 148 2.36E-47 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2064 35832c74774532c46d44bb4e3d40fee4 374 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 2 371 32.033 T 12-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 ALFP_0096 66431adebc650d47a8934727a0b574eb 186 Pfam PF02261 Aspartate decarboxylase 2 114 3.0E-39 T 12-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 ALFP_0096 66431adebc650d47a8934727a0b574eb 186 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 4 92 4.0E-37 T 12-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 ALFP_0096 66431adebc650d47a8934727a0b574eb 186 SUPERFAMILY SSF50692 3 121 1.74E-40 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily ALFP_0096 66431adebc650d47a8934727a0b574eb 186 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 3 125 2.7E-34 T 12-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 ALFP_0096 66431adebc650d47a8934727a0b574eb 186 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 127 51.772 T 12-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 ALFP_0096 66431adebc650d47a8934727a0b574eb 186 Gene3D G3DSA:2.40.40.20 1 126 1.1E-39 T 12-10-2018 ALFP_2567 e8ef0485eff3d9ac2eb3f6044748df5a 306 Gene3D G3DSA:3.40.470.10 121 306 3.8E-49 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 ALFP_2567 e8ef0485eff3d9ac2eb3f6044748df5a 306 Pfam PF03167 Uracil DNA glycosylase superfamily 152 296 4.7E-31 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 ALFP_2567 e8ef0485eff3d9ac2eb3f6044748df5a 306 SUPERFAMILY SSF52141 121 304 5.56E-44 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 ALFP_2567 e8ef0485eff3d9ac2eb3f6044748df5a 306 SMART SM00987 146 297 8.6E-29 T 12-10-2018 ALFP_2567 e8ef0485eff3d9ac2eb3f6044748df5a 306 SMART SM00986 146 297 8.6E-29 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 ALFP_2567 e8ef0485eff3d9ac2eb3f6044748df5a 306 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 132 304 3.5E-42 T 12-10-2018 IPR005273 Uracil-DNA glycosylase family 4 ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 Pfam PF00970 Oxidoreductase FAD-binding domain 108 198 8.6E-11 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 SUPERFAMILY SSF52343 202 331 3.14E-33 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 SUPERFAMILY SSF63380 101 197 5.28E-20 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 Gene3D G3DSA:3.40.50.80 205 331 2.4E-27 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 SUPERFAMILY SSF54292 5 90 5.77E-22 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 PRINTS PR00410 Phenol hydroxylase reductase family signature 234 243 8.5E-20 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 PRINTS PR00410 Phenol hydroxylase reductase family signature 298 306 8.5E-20 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 PRINTS PR00410 Phenol hydroxylase reductase family signature 134 146 8.5E-20 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 PRINTS PR00410 Phenol hydroxylase reductase family signature 209 228 8.5E-20 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 PRINTS PR00410 Phenol hydroxylase reductase family signature 150 157 8.5E-20 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 PRINTS PR00410 Phenol hydroxylase reductase family signature 193 202 8.5E-20 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 Gene3D G3DSA:2.40.30.10 100 196 1.1E-20 T 12-10-2018 ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 8 82 3.1E-13 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 Gene3D G3DSA:3.10.20.30 3 91 2.1E-23 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 234 243 3.9E-5 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 209 228 3.9E-5 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 150 157 3.9E-5 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_0482 75304ccce56562681e1a29b50a00ea50 333 Pfam PF00175 Oxidoreductase NAD-binding domain 211 310 5.5E-15 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ALFP_3487 fef59e5758761da71fe57ae0f20f4766 281 Pfam PF13354 Beta-lactamase enzyme family 44 245 1.0E-57 T 12-10-2018 ALFP_3487 fef59e5758761da71fe57ae0f20f4766 281 SUPERFAMILY SSF56601 17 253 1.15E-49 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like ALFP_3487 fef59e5758761da71fe57ae0f20f4766 281 Gene3D G3DSA:3.40.710.10 13 278 5.6E-63 T 12-10-2018 ALFP_3195 7fa382ed5dd741ea3cd5b39ed9968007 300 Gene3D G3DSA:1.20.58.340 228 299 9.3E-11 T 12-10-2018 ALFP_3195 7fa382ed5dd741ea3cd5b39ed9968007 300 SUPERFAMILY SSF144083 238 295 1.11E-9 T 12-10-2018 ALFP_3195 7fa382ed5dd741ea3cd5b39ed9968007 300 Pfam PF01544 CorA-like Mg2+ transporter protein 11 295 2.8E-13 T 12-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 ALFP_2652 6f76b6060f63efa7afca283a9a704ac9 949 Pfam PF00675 Insulinase (Peptidase family M16) 56 199 5.5E-22 T 12-10-2018 IPR011765 Peptidase M16, N-terminal ALFP_2652 6f76b6060f63efa7afca283a9a704ac9 949 Pfam PF00675 Insulinase (Peptidase family M16) 516 635 6.4E-6 T 12-10-2018 IPR011765 Peptidase M16, N-terminal ALFP_2652 6f76b6060f63efa7afca283a9a704ac9 949 SUPERFAMILY SSF63411 42 254 6.81E-54 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 ALFP_2652 6f76b6060f63efa7afca283a9a704ac9 949 SUPERFAMILY SSF63411 735 919 2.9E-27 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 ALFP_2652 6f76b6060f63efa7afca283a9a704ac9 949 Gene3D G3DSA:3.30.830.10 260 467 5.1E-43 T 12-10-2018 ALFP_2652 6f76b6060f63efa7afca283a9a704ac9 949 Gene3D G3DSA:3.30.830.10 507 714 7.1E-29 T 12-10-2018 ALFP_2652 6f76b6060f63efa7afca283a9a704ac9 949 Gene3D G3DSA:3.30.830.10 39 257 4.3E-62 T 12-10-2018 ALFP_2652 6f76b6060f63efa7afca283a9a704ac9 949 Pfam PF05193 Peptidase M16 inactive domain 669 847 4.1E-23 T 12-10-2018 IPR007863 Peptidase M16, C-terminal ALFP_2652 6f76b6060f63efa7afca283a9a704ac9 949 Pfam PF05193 Peptidase M16 inactive domain 207 383 1.3E-27 T 12-10-2018 IPR007863 Peptidase M16, C-terminal ALFP_2652 6f76b6060f63efa7afca283a9a704ac9 949 Gene3D G3DSA:3.30.830.10 721 919 1.2E-34 T 12-10-2018 ALFP_2652 6f76b6060f63efa7afca283a9a704ac9 949 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 74 97 - T 12-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 ALFP_2652 6f76b6060f63efa7afca283a9a704ac9 949 SUPERFAMILY SSF63411 263 443 8.13E-24 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 ALFP_2652 6f76b6060f63efa7afca283a9a704ac9 949 SUPERFAMILY SSF63411 523 718 1.99E-30 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 ALFP_3340 3bdacf58b6b628ff8d7b2545dbd6b029 237 SMART SM00100 22 144 3.0E-16 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain ALFP_3340 3bdacf58b6b628ff8d7b2545dbd6b029 237 Pfam PF13545 Crp-like helix-turn-helix domain 161 229 4.1E-17 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 ALFP_3340 3bdacf58b6b628ff8d7b2545dbd6b029 237 SUPERFAMILY SSF46785 158 231 6.8E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3340 3bdacf58b6b628ff8d7b2545dbd6b029 237 SUPERFAMILY SSF51206 13 151 1.3E-28 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like ALFP_3340 3bdacf58b6b628ff8d7b2545dbd6b029 237 Gene3D G3DSA:1.10.10.10 158 236 7.9E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3340 3bdacf58b6b628ff8d7b2545dbd6b029 237 SMART SM00419 174 222 1.0E-7 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 ALFP_3340 3bdacf58b6b628ff8d7b2545dbd6b029 237 Gene3D G3DSA:2.60.120.10 12 156 7.8E-34 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_3340 3bdacf58b6b628ff8d7b2545dbd6b029 237 Pfam PF00027 Cyclic nucleotide-binding domain 42 127 3.9E-17 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain ALFP_2714 aee19080246d6afcfdce5f6bbea311e4 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_2714 aee19080246d6afcfdce5f6bbea311e4 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 4.6E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2714 aee19080246d6afcfdce5f6bbea311e4 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 4.6E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2714 aee19080246d6afcfdce5f6bbea311e4 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 4.6E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2714 aee19080246d6afcfdce5f6bbea311e4 250 SUPERFAMILY SSF51735 1 248 1.55E-79 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2714 aee19080246d6afcfdce5f6bbea311e4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.9E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2714 aee19080246d6afcfdce5f6bbea311e4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 3.9E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2714 aee19080246d6afcfdce5f6bbea311e4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 3.9E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2714 aee19080246d6afcfdce5f6bbea311e4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.9E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2714 aee19080246d6afcfdce5f6bbea311e4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 3.9E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2714 aee19080246d6afcfdce5f6bbea311e4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 3.9E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2714 aee19080246d6afcfdce5f6bbea311e4 250 Gene3D G3DSA:3.40.50.720 1 249 2.5E-79 T 12-10-2018 ALFP_2714 aee19080246d6afcfdce5f6bbea311e4 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 248 1.4E-69 T 12-10-2018 ALFP_2983 faf84ded00c43788ecb33d5fe3f85c0f 227 Gene3D G3DSA:3.40.30.10 5 82 7.2E-17 T 12-10-2018 ALFP_2983 faf84ded00c43788ecb33d5fe3f85c0f 227 Pfam PF13417 Glutathione S-transferase, N-terminal domain 9 77 7.9E-16 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 ALFP_2983 faf84ded00c43788ecb33d5fe3f85c0f 227 SUPERFAMILY SSF47616 95 215 1.39E-12 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily ALFP_2983 faf84ded00c43788ecb33d5fe3f85c0f 227 Pfam PF13410 Glutathione S-transferase, C-terminal domain 136 196 1.8E-7 T 12-10-2018 ALFP_2983 faf84ded00c43788ecb33d5fe3f85c0f 227 Gene3D G3DSA:1.20.1050.10 89 205 5.6E-9 T 12-10-2018 ALFP_2983 faf84ded00c43788ecb33d5fe3f85c0f 227 SUPERFAMILY SSF52833 8 88 1.93E-18 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_1112 37f891fdce926ae2bf31833f3552e4dd 469 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 106 351 8.3E-11 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme ALFP_1112 37f891fdce926ae2bf31833f3552e4dd 469 Gene3D G3DSA:3.40.50.1100 99 435 3.0E-137 T 12-10-2018 ALFP_1112 37f891fdce926ae2bf31833f3552e4dd 469 Pfam PF14821 Threonine synthase N terminus 2 79 6.4E-28 T 12-10-2018 IPR029144 Threonine synthase, N-terminal ALFP_1112 37f891fdce926ae2bf31833f3552e4dd 469 TIGRFAM TIGR00260 thrC: threonine synthase 98 429 4.4E-74 T 12-10-2018 IPR004450 Threonine synthase-like ALFP_1112 37f891fdce926ae2bf31833f3552e4dd 469 SUPERFAMILY SSF53686 1 466 1.23E-151 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme ALFP_1112 37f891fdce926ae2bf31833f3552e4dd 469 Gene3D G3DSA:3.90.1380.10 1 91 2.9E-28 T 12-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily ALFP_1112 37f891fdce926ae2bf31833f3552e4dd 469 Gene3D G3DSA:3.40.50.1100 109 448 3.0E-137 T 12-10-2018 ALFP_2021 fd29fcb674887d490c3efd8b3022d7fb 652 Pfam PF13624 SurA N-terminal domain 1 162 2.4E-40 T 12-10-2018 ALFP_2021 fd29fcb674887d490c3efd8b3022d7fb 652 Pfam PF00639 PPIC-type PPIASE domain 273 368 4.2E-24 T 12-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 ALFP_2021 fd29fcb674887d490c3efd8b3022d7fb 652 Gene3D G3DSA:3.10.50.40 267 371 1.8E-35 T 12-10-2018 ALFP_2021 fd29fcb674887d490c3efd8b3022d7fb 652 Gene3D G3DSA:1.10.4030.30 246 384 1.8E-35 T 12-10-2018 ALFP_2021 fd29fcb674887d490c3efd8b3022d7fb 652 Gene3D G3DSA:1.10.4030.30 39 174 1.2E-9 T 12-10-2018 ALFP_2021 fd29fcb674887d490c3efd8b3022d7fb 652 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 308 329 - T 12-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 ALFP_2021 fd29fcb674887d490c3efd8b3022d7fb 652 SUPERFAMILY SSF54534 259 367 7.85E-27 T 12-10-2018 ALFP_2021 fd29fcb674887d490c3efd8b3022d7fb 652 SUPERFAMILY SSF109998 39 239 1.14E-25 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily ALFP_3310 28600ee79a52af06e891a611267c5b21 216 Pfam PF04542 Sigma-70 region 2 32 92 3.1E-7 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_3310 28600ee79a52af06e891a611267c5b21 216 SUPERFAMILY SSF88659 105 184 2.24E-9 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like ALFP_3310 28600ee79a52af06e891a611267c5b21 216 Pfam PF08281 Sigma-70, region 4 128 178 5.9E-8 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ALFP_3310 28600ee79a52af06e891a611267c5b21 216 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 31 182 1.8E-13 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 ALFP_3310 28600ee79a52af06e891a611267c5b21 216 SUPERFAMILY SSF88946 26 89 1.1E-9 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_3310 28600ee79a52af06e891a611267c5b21 216 Gene3D G3DSA:1.10.10.10 101 183 7.9E-6 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2546 3bde905323cb14dbd1445a6c43a1dc51 172 Gene3D G3DSA:3.40.50.360 7 171 3.8E-15 T 12-10-2018 IPR029039 Flavoprotein-like superfamily ALFP_2546 3bde905323cb14dbd1445a6c43a1dc51 172 Pfam PF03358 NADPH-dependent FMN reductase 20 124 2.1E-6 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 ALFP_2546 3bde905323cb14dbd1445a6c43a1dc51 172 SUPERFAMILY SSF52218 9 170 1.21E-21 T 12-10-2018 IPR029039 Flavoprotein-like superfamily ALFP_2735 f66d27d959054b8db8d651047b203195 240 Pfam PF00117 Glutamine amidotransferase class-I 27 182 1.9E-16 T 12-10-2018 IPR017926 Glutamine amidotransferase ALFP_2735 f66d27d959054b8db8d651047b203195 240 SUPERFAMILY SSF52317 25 231 1.53E-41 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_2735 f66d27d959054b8db8d651047b203195 240 Gene3D G3DSA:3.40.50.880 1 239 2.2E-54 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_1700 85c873f1f579925a6af759ad264356a7 89 SUPERFAMILY SSF55594 1 87 1.44E-27 T 12-10-2018 IPR035895 HPr-like superfamily ALFP_1700 85c873f1f579925a6af759ad264356a7 89 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 12-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site ALFP_1700 85c873f1f579925a6af759ad264356a7 89 PRINTS PR00107 Phosphocarrier protein signature 38 53 2.8E-14 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like ALFP_1700 85c873f1f579925a6af759ad264356a7 89 PRINTS PR00107 Phosphocarrier protein signature 53 70 2.8E-14 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like ALFP_1700 85c873f1f579925a6af759ad264356a7 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 2.8E-14 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like ALFP_1700 85c873f1f579925a6af759ad264356a7 89 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 12-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site ALFP_1700 85c873f1f579925a6af759ad264356a7 89 Pfam PF00381 PTS HPr component phosphorylation site 5 82 2.9E-26 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like ALFP_1700 85c873f1f579925a6af759ad264356a7 89 Gene3D G3DSA:3.30.1340.10 1 88 1.2E-30 T 12-10-2018 IPR035895 HPr-like superfamily ALFP_1700 85c873f1f579925a6af759ad264356a7 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 4.0E-29 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like ALFP_2605 3fd92c1b00e32c77f40ebb65cbed2153 260 Pfam PF00106 short chain dehydrogenase 5 197 6.9E-57 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2605 3fd92c1b00e32c77f40ebb65cbed2153 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 5.5E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2605 3fd92c1b00e32c77f40ebb65cbed2153 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 5.5E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2605 3fd92c1b00e32c77f40ebb65cbed2153 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 5.5E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2605 3fd92c1b00e32c77f40ebb65cbed2153 260 Gene3D G3DSA:3.40.50.720 1 260 8.0E-83 T 12-10-2018 ALFP_2605 3fd92c1b00e32c77f40ebb65cbed2153 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 3.0E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2605 3fd92c1b00e32c77f40ebb65cbed2153 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 3.0E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2605 3fd92c1b00e32c77f40ebb65cbed2153 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 221 241 3.0E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2605 3fd92c1b00e32c77f40ebb65cbed2153 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 3.0E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2605 3fd92c1b00e32c77f40ebb65cbed2153 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.0E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2605 3fd92c1b00e32c77f40ebb65cbed2153 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 3.0E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2605 3fd92c1b00e32c77f40ebb65cbed2153 260 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 5 259 6.3E-105 T 12-10-2018 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 ALFP_2605 3fd92c1b00e32c77f40ebb65cbed2153 260 SUPERFAMILY SSF51735 3 259 4.0E-76 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2605 3fd92c1b00e32c77f40ebb65cbed2153 260 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_1733 df9e6419a56c5b099de3cd1982742633 1018 SUPERFAMILY SSF53623 648 870 1.44E-33 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 ALFP_1733 df9e6419a56c5b099de3cd1982742633 1018 SUPERFAMILY SSF56300 10 265 1.64E-27 T 12-10-2018 ALFP_1733 df9e6419a56c5b099de3cd1982742633 1018 Gene3D G3DSA:3.40.1190.10 637 870 2.6E-38 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 ALFP_1733 df9e6419a56c5b099de3cd1982742633 1018 Gene3D G3DSA:3.90.190.20 878 1018 5.3E-34 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 ALFP_1733 df9e6419a56c5b099de3cd1982742633 1018 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 12 258 4.1E-59 T 12-10-2018 IPR019079 Capsule synthesis protein, CapA ALFP_1733 df9e6419a56c5b099de3cd1982742633 1018 Pfam PF02875 Mur ligase family, glutamate ligase domain 885 953 1.5E-9 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 ALFP_1733 df9e6419a56c5b099de3cd1982742633 1018 Pfam PF08245 Mur ligase middle domain 661 851 4.0E-26 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 ALFP_1733 df9e6419a56c5b099de3cd1982742633 1018 SMART SM00854 12 259 4.3E-68 T 12-10-2018 IPR019079 Capsule synthesis protein, CapA ALFP_1733 df9e6419a56c5b099de3cd1982742633 1018 SUPERFAMILY SSF53244 883 1014 1.92E-31 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 SUPERFAMILY SSF47794 430 491 1.33E-12 T 12-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 Pfam PF00575 S1 RNA binding domain 139 194 1.2E-8 T 12-10-2018 IPR003029 S1 domain GO:0003676 ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 367 416 6.3E-18 T 12-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 Pfam PF08529 NusA N-terminal domain 4 127 2.1E-37 T 12-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 SUPERFAMILY SSF54814 202 279 4.58E-28 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 SUPERFAMILY SSF69705 1 129 2.09E-39 T 12-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 Gene3D G3DSA:3.30.300.20 280 348 2.8E-25 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 Pfam PF14520 Helix-hairpin-helix domain 432 486 1.2E-7 T 12-10-2018 ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 Gene3D G3DSA:2.40.50.140 129 200 5.0E-21 T 12-10-2018 ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 Gene3D G3DSA:3.30.1480.10 1 128 1.2E-42 T 12-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 SUPERFAMILY SSF47794 358 417 1.88E-15 T 12-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 Gene3D G3DSA:1.10.150.20 356 423 6.3E-26 T 12-10-2018 ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 SMART SM00316 136 202 5.5E-11 T 12-10-2018 IPR022967 RNA-binding domain, S1 ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 SUPERFAMILY SSF50249 136 201 2.11E-16 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 SUPERFAMILY SSF54814 281 344 4.9E-14 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 343 1.4E-122 T 12-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 412 28.951 T 12-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 SMART SM00322 303 376 0.0012 T 12-10-2018 IPR004087 K Homology domain GO:0003676 ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 Gene3D G3DSA:1.10.150.20 431 489 8.0E-17 T 12-10-2018 ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 Gene3D G3DSA:3.30.300.20 201 279 5.2E-30 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta ALFP_1075 067aaa8933a7be1c8768aa74a53fe26e 494 Pfam PF13184 NusA-like KH domain 232 299 1.2E-24 T 12-10-2018 IPR025249 KH domain, NusA-like GO:0003723 ALFP_0616 095d783c3342ef361d16b8d2427a61ae 275 SUPERFAMILY SSF46946 134 226 4.86E-27 T 12-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 ALFP_0616 095d783c3342ef361d16b8d2427a61ae 275 Pfam PF06827 Zinc finger found in FPG and IleRS 246 274 4.7E-11 T 12-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 ALFP_0616 095d783c3342ef361d16b8d2427a61ae 275 SUPERFAMILY SSF57716 221 273 1.48E-14 T 12-10-2018 ALFP_0616 095d783c3342ef361d16b8d2427a61ae 275 SMART SM01232 133 225 1.4E-42 T 12-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 ALFP_0616 095d783c3342ef361d16b8d2427a61ae 275 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 133 222 4.0E-22 T 12-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 ALFP_0616 095d783c3342ef361d16b8d2427a61ae 275 SUPERFAMILY SSF81624 2 142 4.84E-35 T 12-10-2018 IPR035937 MutM-like, N-terminal ALFP_0616 095d783c3342ef361d16b8d2427a61ae 275 Gene3D G3DSA:3.20.190.10 2 127 8.6E-34 T 12-10-2018 IPR035937 MutM-like, N-terminal ALFP_0616 095d783c3342ef361d16b8d2427a61ae 275 SMART SM00898 2 115 3.4E-42 T 12-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 ALFP_0616 095d783c3342ef361d16b8d2427a61ae 275 Gene3D G3DSA:1.10.8.50 143 274 2.8E-43 T 12-10-2018 ALFP_0616 095d783c3342ef361d16b8d2427a61ae 275 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 114 9.8E-28 T 12-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 ALFP_0616 095d783c3342ef361d16b8d2427a61ae 275 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 274 38.301 T 12-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 ALFP_0616 095d783c3342ef361d16b8d2427a61ae 275 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 273 1.0E-80 T 12-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 ALFP_1728 b3fa1f68c5449f62cb3058b91a858ffd 729 ProSitePatterns PS00211 ABC transporters family signature. 627 641 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1728 b3fa1f68c5449f62cb3058b91a858ffd 729 Gene3D G3DSA:3.40.50.300 480 729 1.4E-70 T 12-10-2018 ALFP_1728 b3fa1f68c5449f62cb3058b91a858ffd 729 SUPERFAMILY SSF90123 158 470 1.57E-51 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_1728 b3fa1f68c5449f62cb3058b91a858ffd 729 Gene3D G3DSA:1.20.1560.10 161 472 5.5E-55 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_1728 b3fa1f68c5449f62cb3058b91a858ffd 729 SMART SM00382 515 701 5.8E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1728 b3fa1f68c5449f62cb3058b91a858ffd 729 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 23 718 7.3E-234 T 12-10-2018 IPR017750 ATPase, type I secretion system ALFP_1728 b3fa1f68c5449f62cb3058b91a858ffd 729 Gene3D G3DSA:3.90.70.10 20 140 4.3E-8 T 12-10-2018 ALFP_1728 b3fa1f68c5449f62cb3058b91a858ffd 729 SUPERFAMILY SSF52540 477 709 6.5E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1728 b3fa1f68c5449f62cb3058b91a858ffd 729 Pfam PF00005 ABC transporter 510 655 3.0E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1728 b3fa1f68c5449f62cb3058b91a858ffd 729 Pfam PF00664 ABC transporter transmembrane region 176 431 2.7E-24 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 ALFP_2233 20633f4101ce30557ca32e95bbb91eb8 199 SUPERFAMILY SSF50447 9 106 1.69E-17 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily ALFP_2233 20633f4101ce30557ca32e95bbb91eb8 199 Pfam PF01782 RimM N-terminal domain 12 102 3.0E-22 T 12-10-2018 IPR002676 RimM, N-terminal GO:0006364 ALFP_2233 20633f4101ce30557ca32e95bbb91eb8 199 Gene3D G3DSA:2.30.30.240 107 199 1.3E-18 T 12-10-2018 ALFP_2233 20633f4101ce30557ca32e95bbb91eb8 199 SUPERFAMILY SSF50346 112 197 5.1E-10 T 12-10-2018 IPR011033 PRC-barrel-like superfamily ALFP_2233 20633f4101ce30557ca32e95bbb91eb8 199 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 11 197 8.2E-38 T 12-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 ALFP_2233 20633f4101ce30557ca32e95bbb91eb8 199 Gene3D G3DSA:2.40.30.60 1 106 3.1E-28 T 12-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 ALFP_2233 20633f4101ce30557ca32e95bbb91eb8 199 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 10 199 22.312 T 12-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 ALFP_2571 7285b87a7f66fa5e43ad21bb8ea3365e 161 Pfam PF02542 YgbB family 5 158 7.6E-63 T 12-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 ALFP_2571 7285b87a7f66fa5e43ad21bb8ea3365e 161 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 6 159 3.1E-64 T 12-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 ALFP_2571 7285b87a7f66fa5e43ad21bb8ea3365e 161 SUPERFAMILY SSF69765 3 160 4.19E-64 T 12-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 ALFP_2571 7285b87a7f66fa5e43ad21bb8ea3365e 161 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 5 160 35.345 T 12-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 ALFP_2571 7285b87a7f66fa5e43ad21bb8ea3365e 161 Gene3D G3DSA:3.30.1330.50 3 161 5.4E-67 T 12-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 ALFP_2571 7285b87a7f66fa5e43ad21bb8ea3365e 161 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 39 54 - T 12-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 ALFP_1629 5a821234aea988b905f0fcc260af679e 169 PRINTS PR00598 Bacterial regulatory protein MarR family signature 74 90 3.7E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1629 5a821234aea988b905f0fcc260af679e 169 PRINTS PR00598 Bacterial regulatory protein MarR family signature 140 160 3.7E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1629 5a821234aea988b905f0fcc260af679e 169 PRINTS PR00598 Bacterial regulatory protein MarR family signature 110 126 3.7E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1629 5a821234aea988b905f0fcc260af679e 169 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 106 3.7E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1629 5a821234aea988b905f0fcc260af679e 169 SMART SM00347 47 150 5.7E-16 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1629 5a821234aea988b905f0fcc260af679e 169 Gene3D G3DSA:1.10.10.10 2 165 3.2E-35 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1629 5a821234aea988b905f0fcc260af679e 169 SUPERFAMILY SSF46785 6 165 3.78E-31 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1629 5a821234aea988b905f0fcc260af679e 169 Pfam PF12802 MarR family 52 114 2.5E-12 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2266 2af236da2401112ecb91ac72e659cf0c 221 Hamap MF_02089 Epoxyqueuosine reductase QueH [queH]. 8 184 33.414 T 12-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 ALFP_2266 2af236da2401112ecb91ac72e659cf0c 221 Pfam PF02677 Uncharacterized BCR, COG1636 8 182 9.6E-66 T 12-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 ALFP_1615 8a88c3e4c83568517d19ed064f6deef6 311 Gene3D G3DSA:1.10.10.10 226 296 6.5E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1615 8a88c3e4c83568517d19ed064f6deef6 311 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 264 276 1.7E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_1615 8a88c3e4c83568517d19ed064f6deef6 311 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 248 264 1.7E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_1615 8a88c3e4c83568517d19ed064f6deef6 311 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 234 248 1.7E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_1615 8a88c3e4c83568517d19ed064f6deef6 311 SUPERFAMILY SSF46894 224 293 8.16E-18 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ALFP_1615 8a88c3e4c83568517d19ed064f6deef6 311 SMART SM00421 231 288 2.5E-22 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_1615 8a88c3e4c83568517d19ed064f6deef6 311 Pfam PF00196 Bacterial regulatory proteins, luxR family 233 286 4.5E-17 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3437 bdd6caf3f203ab4d231ed5dc773f10a0 122 Pfam PF01230 HIT domain 14 111 1.2E-26 T 12-10-2018 IPR001310 Histidine triad (HIT) protein ALFP_3437 bdd6caf3f203ab4d231ed5dc773f10a0 122 SUPERFAMILY SSF54197 1 110 2.13E-36 T 12-10-2018 IPR036265 HIT-like superfamily ALFP_3437 bdd6caf3f203ab4d231ed5dc773f10a0 122 PRINTS PR00332 Histidine triad family signature 98 108 1.3E-18 T 12-10-2018 IPR001310 Histidine triad (HIT) protein ALFP_3437 bdd6caf3f203ab4d231ed5dc773f10a0 122 PRINTS PR00332 Histidine triad family signature 6 22 1.3E-18 T 12-10-2018 IPR001310 Histidine triad (HIT) protein ALFP_3437 bdd6caf3f203ab4d231ed5dc773f10a0 122 PRINTS PR00332 Histidine triad family signature 27 45 1.3E-18 T 12-10-2018 IPR001310 Histidine triad (HIT) protein ALFP_3437 bdd6caf3f203ab4d231ed5dc773f10a0 122 Gene3D G3DSA:3.30.428.10 1 116 1.0E-38 T 12-10-2018 IPR036265 HIT-like superfamily ALFP_3437 bdd6caf3f203ab4d231ed5dc773f10a0 122 ProSitePatterns PS00892 HIT domain signature. 91 109 - T 12-10-2018 IPR019808 Histidine triad, conserved site ALFP_3357 8f5d5a1a34dcce95f06fe2cc7fb2781d 340 Gene3D G3DSA:3.40.190.10 140 263 5.5E-89 T 12-10-2018 ALFP_3357 8f5d5a1a34dcce95f06fe2cc7fb2781d 340 SUPERFAMILY SSF53850 127 304 3.67E-11 T 12-10-2018 ALFP_3357 8f5d5a1a34dcce95f06fe2cc7fb2781d 340 Gene3D G3DSA:3.40.190.150 42 331 5.5E-89 T 12-10-2018 ALFP_3357 8f5d5a1a34dcce95f06fe2cc7fb2781d 340 PIRSF PIRSF017082 8 339 2.8E-62 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_3357 8f5d5a1a34dcce95f06fe2cc7fb2781d 340 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 63 333 7.6E-57 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_3044 4e1fad2d4ec1b63b2aa908397a6a8ad0 373 Pfam PF03524 Conjugal transfer protein 35 242 1.5E-50 T 12-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX ALFP_3044 4e1fad2d4ec1b63b2aa908397a6a8ad0 373 Gene3D G3DSA:2.60.40.2500 137 269 7.6E-37 T 12-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily ALFP_1742 3f2fd5013970512a79c2ec3c7e78c637 534 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1742 3f2fd5013970512a79c2ec3c7e78c637 534 Pfam PF00005 ABC transporter 18 177 7.3E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1742 3f2fd5013970512a79c2ec3c7e78c637 534 Pfam PF00005 ABC transporter 294 443 8.2E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1742 3f2fd5013970512a79c2ec3c7e78c637 534 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 496 523 0.28 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ALFP_1742 3f2fd5013970512a79c2ec3c7e78c637 534 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 229 286 2.0E-6 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ALFP_1742 3f2fd5013970512a79c2ec3c7e78c637 534 ProSitePatterns PS00211 ABC transporters family signature. 417 431 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1742 3f2fd5013970512a79c2ec3c7e78c637 534 SMART SM00382 303 494 5.5E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1742 3f2fd5013970512a79c2ec3c7e78c637 534 SMART SM00382 26 227 1.2E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1742 3f2fd5013970512a79c2ec3c7e78c637 534 SUPERFAMILY SSF52540 14 249 2.93E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1742 3f2fd5013970512a79c2ec3c7e78c637 534 Gene3D G3DSA:3.40.50.300 1 277 3.7E-81 T 12-10-2018 ALFP_1742 3f2fd5013970512a79c2ec3c7e78c637 534 SUPERFAMILY SSF52540 270 516 1.96E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1742 3f2fd5013970512a79c2ec3c7e78c637 534 Gene3D G3DSA:3.40.50.300 281 523 2.3E-69 T 12-10-2018 ALFP_0593 76c78e1b06056706dbe33ed00681b88e 305 Pfam PF03466 LysR substrate binding domain 90 291 1.5E-44 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0593 76c78e1b06056706dbe33ed00681b88e 305 SUPERFAMILY SSF53850 90 295 2.48E-46 T 12-10-2018 ALFP_0593 76c78e1b06056706dbe33ed00681b88e 305 Gene3D G3DSA:3.40.190.10 91 289 1.7E-64 T 12-10-2018 ALFP_0593 76c78e1b06056706dbe33ed00681b88e 305 Gene3D G3DSA:1.10.10.10 3 89 6.1E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0593 76c78e1b06056706dbe33ed00681b88e 305 Gene3D G3DSA:3.40.190.10 163 264 1.7E-64 T 12-10-2018 ALFP_0593 76c78e1b06056706dbe33ed00681b88e 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 3.2E-12 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0593 76c78e1b06056706dbe33ed00681b88e 305 SUPERFAMILY SSF46785 5 85 1.36E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1397 91133febc7b9fab883d9acb702e4b38b 235 SMART SM00448 4 114 2.8E-34 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_1397 91133febc7b9fab883d9acb702e4b38b 235 Gene3D G3DSA:1.10.10.10 129 234 5.8E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1397 91133febc7b9fab883d9acb702e4b38b 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 228 7.5E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_1397 91133febc7b9fab883d9acb702e4b38b 235 Gene3D G3DSA:3.40.50.2300 1 122 1.4E-32 T 12-10-2018 ALFP_1397 91133febc7b9fab883d9acb702e4b38b 235 SMART SM00862 152 228 1.4E-16 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_1397 91133febc7b9fab883d9acb702e4b38b 235 Pfam PF00072 Response regulator receiver domain 6 115 3.5E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_1397 91133febc7b9fab883d9acb702e4b38b 235 SUPERFAMILY SSF52172 1 181 3.37E-37 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_3687 1aa1b3b66531c9796fcd0dfd24fcf26b 126 Hamap MF_00422 Protein translocase subunit SecE [secE]. 65 121 11.659 T 12-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 ALFP_3687 1aa1b3b66531c9796fcd0dfd24fcf26b 126 PRINTS PR01650 Bacterial translocase SecE signature 88 108 2.0E-8 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 ALFP_3687 1aa1b3b66531c9796fcd0dfd24fcf26b 126 PRINTS PR01650 Bacterial translocase SecE signature 43 64 2.0E-8 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 ALFP_3687 1aa1b3b66531c9796fcd0dfd24fcf26b 126 PRINTS PR01650 Bacterial translocase SecE signature 64 84 2.0E-8 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 ALFP_3687 1aa1b3b66531c9796fcd0dfd24fcf26b 126 Gene3D G3DSA:1.20.5.1030 63 121 2.0E-15 T 12-10-2018 IPR038379 SecE superfamily ALFP_3687 1aa1b3b66531c9796fcd0dfd24fcf26b 126 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 68 118 4.2E-18 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 ALFP_3687 1aa1b3b66531c9796fcd0dfd24fcf26b 126 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 69 119 7.7E-19 T 12-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 ALFP_1699 a8787acc333c8adcafa563dc661d308e 135 SUPERFAMILY SSF53062 3 132 6.54E-22 T 12-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 ALFP_1699 a8787acc333c8adcafa563dc661d308e 135 Gene3D G3DSA:3.40.50.510 2 134 3.8E-24 T 12-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 ALFP_1699 a8787acc333c8adcafa563dc661d308e 135 Pfam PF03610 PTS system fructose IIA component 6 111 2.3E-13 T 12-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 ALFP_0799 2f15b53ac3b45690cad359b19553c1d0 307 Gene3D G3DSA:3.30.1700.10 128 306 1.0E-64 T 12-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 ALFP_0799 2f15b53ac3b45690cad359b19553c1d0 307 SUPERFAMILY SSF54211 3 124 2.5E-40 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_0799 2f15b53ac3b45690cad359b19553c1d0 307 SUPERFAMILY SSF54211 134 280 1.59E-49 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_0799 2f15b53ac3b45690cad359b19553c1d0 307 Gene3D G3DSA:3.30.230.20 1 127 4.6E-47 T 12-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 ALFP_0799 2f15b53ac3b45690cad359b19553c1d0 307 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 279 1.3E-104 T 12-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 ALFP_0799 2f15b53ac3b45690cad359b19553c1d0 307 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 283 44.644 T 12-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 ALFP_0799 2f15b53ac3b45690cad359b19553c1d0 307 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3 301 6.3E-118 T 12-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 ALFP_1381 b9ed978781452a79c06d0f35fefa3825 137 Pfam PF00293 NUDIX domain 9 119 4.0E-19 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 ALFP_1381 b9ed978781452a79c06d0f35fefa3825 137 Gene3D G3DSA:3.90.79.10 2 133 3.6E-25 T 12-10-2018 ALFP_1381 b9ed978781452a79c06d0f35fefa3825 137 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 ALFP_1381 b9ed978781452a79c06d0f35fefa3825 137 SUPERFAMILY SSF55811 4 121 1.62E-25 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 ALFP_0142 2fb986bb2ffbf9d4a0a67fbe68544a9d 358 Gene3D G3DSA:3.60.15.10 23 299 9.5E-58 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_0142 2fb986bb2ffbf9d4a0a67fbe68544a9d 358 SUPERFAMILY SSF56281 15 355 3.66E-69 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_0142 2fb986bb2ffbf9d4a0a67fbe68544a9d 358 Pfam PF00753 Metallo-beta-lactamase superfamily 42 271 4.1E-26 T 12-10-2018 IPR001279 Metallo-beta-lactamase ALFP_0142 2fb986bb2ffbf9d4a0a67fbe68544a9d 358 SMART SM00849 42 271 1.8E-24 T 12-10-2018 IPR001279 Metallo-beta-lactamase ALFP_0812 726e336e24be79e59196849d6baf769d 219 SUPERFAMILY SSF161098 10 205 1.31E-39 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0812 726e336e24be79e59196849d6baf769d 219 Gene3D G3DSA:1.10.3720.10 6 219 1.9E-43 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0812 726e336e24be79e59196849d6baf769d 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 218 6.1E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0358 fadbee6e67857a1a73dc686e9adca79d 691 Pfam PF00580 UvrD/REP helicase N-terminal domain 16 275 1.8E-69 T 12-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 ALFP_0358 fadbee6e67857a1a73dc686e9adca79d 691 Gene3D G3DSA:3.40.50.300 16 277 4.1E-89 T 12-10-2018 ALFP_0358 fadbee6e67857a1a73dc686e9adca79d 691 Gene3D G3DSA:1.10.10.160 118 193 4.1E-89 T 12-10-2018 IPR013986 DExx box DNA helicase domain superfamily ALFP_0358 fadbee6e67857a1a73dc686e9adca79d 691 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 14 689 37.358 T 12-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 ALFP_0358 fadbee6e67857a1a73dc686e9adca79d 691 Pfam PF13361 UvrD-like helicase C-terminal domain 281 639 2.2E-60 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 ALFP_0358 fadbee6e67857a1a73dc686e9adca79d 691 SUPERFAMILY SSF52540 13 659 8.24E-155 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0358 fadbee6e67857a1a73dc686e9adca79d 691 Gene3D G3DSA:3.40.50.300 284 658 4.2E-108 T 12-10-2018 ALFP_0358 fadbee6e67857a1a73dc686e9adca79d 691 Gene3D G3DSA:1.10.486.10 387 558 4.2E-108 T 12-10-2018 ALFP_0564 6818bd4269c5bebb3df6753b123996ad 319 Gene3D G3DSA:2.130.10.10 1 316 6.8E-71 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 ALFP_0564 6818bd4269c5bebb3df6753b123996ad 319 SUPERFAMILY SSF50969 12 291 6.2E-36 T 12-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like ALFP_0280 16876ec9ae3e1c77f95e51c61a521d20 243 Gene3D G3DSA:3.40.30.10 84 243 2.2E-36 T 12-10-2018 ALFP_0280 16876ec9ae3e1c77f95e51c61a521d20 243 Pfam PF10411 Disulfide bond isomerase protein N-terminus 36 89 9.8E-16 T 12-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal ALFP_0280 16876ec9ae3e1c77f95e51c61a521d20 243 Pfam PF13098 Thioredoxin-like domain 118 237 2.0E-26 T 12-10-2018 IPR012336 Thioredoxin-like fold ALFP_0280 16876ec9ae3e1c77f95e51c61a521d20 243 SUPERFAMILY SSF52833 98 240 5.55E-32 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_0280 16876ec9ae3e1c77f95e51c61a521d20 243 SUPERFAMILY SSF54423 40 89 1.2E-8 T 12-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 ALFP_0280 16876ec9ae3e1c77f95e51c61a521d20 243 ProSitePatterns PS00194 Thioredoxin family active site. 125 143 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 ALFP_0299 ae8e03e14dab121e773d825baa0ee5c0 270 Gene3D G3DSA:1.10.3720.10 70 269 1.6E-17 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0299 ae8e03e14dab121e773d825baa0ee5c0 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 266 4.3E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0299 ae8e03e14dab121e773d825baa0ee5c0 270 SUPERFAMILY SSF161098 74 256 1.16E-22 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3092 b6d56b4c5d67efc53c64752b2a7b4177 288 Pfam PF03466 LysR substrate binding domain 77 280 7.9E-41 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_3092 b6d56b4c5d67efc53c64752b2a7b4177 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 51 1.8E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3092 b6d56b4c5d67efc53c64752b2a7b4177 288 Gene3D G3DSA:1.10.10.10 1 80 3.6E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3092 b6d56b4c5d67efc53c64752b2a7b4177 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 7 18 5.6E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3092 b6d56b4c5d67efc53c64752b2a7b4177 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 5.6E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3092 b6d56b4c5d67efc53c64752b2a7b4177 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 28 5.6E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3092 b6d56b4c5d67efc53c64752b2a7b4177 288 Gene3D G3DSA:3.40.190.290 81 286 2.6E-41 T 12-10-2018 ALFP_3092 b6d56b4c5d67efc53c64752b2a7b4177 288 SUPERFAMILY SSF53850 75 284 4.07E-40 T 12-10-2018 ALFP_3092 b6d56b4c5d67efc53c64752b2a7b4177 288 SUPERFAMILY SSF46785 1 99 1.36E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2394 cbc6124272ee5219c0ae3f57a31d6b65 436 Gene3D G3DSA:1.20.1250.20 5 204 5.4E-34 T 12-10-2018 ALFP_2394 cbc6124272ee5219c0ae3f57a31d6b65 436 Pfam PF07690 Major Facilitator Superfamily 19 335 3.5E-36 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_2394 cbc6124272ee5219c0ae3f57a31d6b65 436 SUPERFAMILY SSF103473 4 414 3.01E-63 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2394 cbc6124272ee5219c0ae3f57a31d6b65 436 Gene3D G3DSA:1.20.1250.20 212 418 1.9E-24 T 12-10-2018 ALFP_1476 6b3ecf03b1f39a726ef35966d6dd7159 219 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 129 139 3.3E-10 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 ALFP_1476 6b3ecf03b1f39a726ef35966d6dd7159 219 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 168 180 3.3E-10 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 ALFP_1476 6b3ecf03b1f39a726ef35966d6dd7159 219 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 140 151 3.3E-10 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 ALFP_1476 6b3ecf03b1f39a726ef35966d6dd7159 219 Gene3D G3DSA:2.10.109.10 98 217 4.2E-40 T 12-10-2018 ALFP_1476 6b3ecf03b1f39a726ef35966d6dd7159 219 Pfam PF01726 LexA DNA binding domain 4 66 1.2E-27 T 12-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 ALFP_1476 6b3ecf03b1f39a726ef35966d6dd7159 219 Gene3D G3DSA:1.10.10.10 2 70 1.7E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1476 6b3ecf03b1f39a726ef35966d6dd7159 219 TIGRFAM TIGR00498 lexA: repressor LexA 4 215 8.8E-69 T 12-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 ALFP_1476 6b3ecf03b1f39a726ef35966d6dd7159 219 Hamap MF_00015 LexA repressor [lexA]. 4 216 31.287 T 12-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 ALFP_1476 6b3ecf03b1f39a726ef35966d6dd7159 219 SUPERFAMILY SSF51306 93 214 2.44E-33 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily ALFP_1476 6b3ecf03b1f39a726ef35966d6dd7159 219 Pfam PF00717 Peptidase S24-like 132 198 1.8E-15 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C ALFP_1476 6b3ecf03b1f39a726ef35966d6dd7159 219 SUPERFAMILY SSF46785 4 71 6.65E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2439 900f3f75891f619625da99f693355d71 328 SMART SM00829 14 325 9.3E-43 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 ALFP_2439 900f3f75891f619625da99f693355d71 328 Pfam PF00107 Zinc-binding dehydrogenase 154 283 4.2E-30 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 ALFP_2439 900f3f75891f619625da99f693355d71 328 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 89 2.5E-10 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ALFP_2439 900f3f75891f619625da99f693355d71 328 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 143 164 - T 12-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 ALFP_2439 900f3f75891f619625da99f693355d71 328 SUPERFAMILY SSF51735 114 274 3.54E-49 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2439 900f3f75891f619625da99f693355d71 328 Gene3D G3DSA:3.90.180.10 15 321 1.2E-125 T 12-10-2018 ALFP_2439 900f3f75891f619625da99f693355d71 328 SUPERFAMILY SSF50129 3 147 9.28E-41 T 12-10-2018 IPR011032 GroES-like superfamily ALFP_2439 900f3f75891f619625da99f693355d71 328 Gene3D G3DSA:3.40.50.720 126 271 1.2E-125 T 12-10-2018 ALFP_3628 cbc87b36176ab18e7879ab58865c6740 106 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 96 18.983 T 12-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3628 cbc87b36176ab18e7879ab58865c6740 106 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 101 5.9E-24 T 12-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3628 cbc87b36176ab18e7879ab58865c6740 106 Gene3D G3DSA:2.30.30.30 1 103 1.7E-34 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 ALFP_3628 cbc87b36176ab18e7879ab58865c6740 106 SUPERFAMILY SSF50104 3 100 1.56E-29 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily ALFP_3628 cbc87b36176ab18e7879ab58865c6740 106 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 12-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3628 cbc87b36176ab18e7879ab58865c6740 106 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 102 1.2E-31 T 12-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_0565 48b1339b442dc1b2aef3682d75c25b0f 157 Gene3D G3DSA:3.40.140.10 1 155 1.4E-44 T 12-10-2018 ALFP_0565 48b1339b442dc1b2aef3682d75c25b0f 157 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 52 89 - T 12-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 ALFP_0565 48b1339b442dc1b2aef3682d75c25b0f 157 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 3 100 2.4E-21 T 12-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain ALFP_0565 48b1339b442dc1b2aef3682d75c25b0f 157 SUPERFAMILY SSF53927 2 139 5.86E-39 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 ALFP_1682 58bfbb8820fa21181d934555e80d367f 109 Gene3D G3DSA:2.60.120.10 6 109 1.4E-6 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_1682 58bfbb8820fa21181d934555e80d367f 109 SUPERFAMILY SSF51182 23 95 4.29E-10 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_2022 7df09cf95faef73e6abc897d9bc84268 248 SUPERFAMILY SSF51695 6 244 2.51E-61 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 ALFP_2022 7df09cf95faef73e6abc897d9bc84268 248 Gene3D G3DSA:3.20.20.190 10 238 4.8E-76 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 ALFP_2022 7df09cf95faef73e6abc897d9bc84268 248 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 13 241 5.0E-40 T 12-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 ALFP_3376 fa482b01a7d981fd92f574ad29e5e14f 320 SUPERFAMILY SSF88713 17 280 1.04E-7 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 ALFP_3376 fa482b01a7d981fd92f574ad29e5e14f 320 Gene3D G3DSA:3.20.20.370 1 292 2.3E-14 T 12-10-2018 ALFP_3302 606e264703168535564af4ddfba56bc9 591 Pfam PF05299 M61 glycyl aminopeptidase 288 404 2.8E-48 T 12-10-2018 IPR007963 Peptidase M61, catalytic domain ALFP_3302 606e264703168535564af4ddfba56bc9 591 Gene3D G3DSA:1.10.390.60 184 474 1.8E-102 T 12-10-2018 ALFP_3302 606e264703168535564af4ddfba56bc9 591 Pfam PF13180 PDZ domain 505 576 2.8E-11 T 12-10-2018 IPR001478 PDZ domain GO:0005515 ALFP_3302 606e264703168535564af4ddfba56bc9 591 Gene3D G3DSA:2.60.40.3650 6 182 8.3E-60 T 12-10-2018 ALFP_3302 606e264703168535564af4ddfba56bc9 591 SUPERFAMILY SSF55486 243 436 8.06E-8 T 12-10-2018 ALFP_3302 606e264703168535564af4ddfba56bc9 591 SUPERFAMILY SSF50156 511 578 2.63E-11 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 ALFP_3302 606e264703168535564af4ddfba56bc9 591 PIRSF PIRSF016493 2 591 6.5E-208 T 12-10-2018 IPR024191 Peptidase M61 ALFP_3302 606e264703168535564af4ddfba56bc9 591 Gene3D G3DSA:2.30.42.10 499 590 8.9E-17 T 12-10-2018 ALFP_2774 69c353baefa0d2f79d2c0a16449cd150 286 Pfam PF03934 Type II secretion system (T2SS), protein K 37 154 2.5E-21 T 12-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 ALFP_2774 69c353baefa0d2f79d2c0a16449cd150 286 Pfam PF03934 Type II secretion system (T2SS), protein K 173 280 1.6E-23 T 12-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 ALFP_2774 69c353baefa0d2f79d2c0a16449cd150 286 SUPERFAMILY SSF54523 43 283 5.18E-7 T 12-10-2018 ALFP_2774 69c353baefa0d2f79d2c0a16449cd150 286 PIRSF PIRSF002786 160 286 9.1E-22 T 12-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 ALFP_2774 69c353baefa0d2f79d2c0a16449cd150 286 PIRSF PIRSF002786 1 165 4.6E-29 T 12-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 ALFP_0772 61b506576f9620078f5c01060cd2c8ef 92 Pfam PF03776 Septum formation topological specificity factor MinE 14 82 1.4E-24 T 12-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 ALFP_0772 61b506576f9620078f5c01060cd2c8ef 92 SUPERFAMILY SSF55229 34 84 3.66E-15 T 12-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 ALFP_0772 61b506576f9620078f5c01060cd2c8ef 92 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 91 18.314 T 12-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 ALFP_0772 61b506576f9620078f5c01060cd2c8ef 92 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 82 1.3E-29 T 12-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 ALFP_0772 61b506576f9620078f5c01060cd2c8ef 92 Gene3D G3DSA:3.30.1070.10 1 83 2.2E-25 T 12-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 ALFP_2586 3fdfcb1038167e8680525e7b746d3b79 164 Gene3D G3DSA:1.10.10.1590 1 74 1.8E-24 T 12-10-2018 ALFP_2586 3fdfcb1038167e8680525e7b746d3b79 164 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 10 158 5.9E-57 T 12-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2586 3fdfcb1038167e8680525e7b746d3b79 164 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 12 158 4.9E-46 T 12-10-2018 ALFP_2586 3fdfcb1038167e8680525e7b746d3b79 164 PIRSF PIRSF000216 2 164 1.2E-52 T 12-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2586 3fdfcb1038167e8680525e7b746d3b79 164 SUPERFAMILY SSF52833 3 160 4.36E-48 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_2586 3fdfcb1038167e8680525e7b746d3b79 164 Gene3D G3DSA:3.40.30.10 75 164 1.5E-21 T 12-10-2018 ALFP_2187 8ea01adecc4d8a0bde956eb351550016 288 Pfam PF13419 Haloacid dehalogenase-like hydrolase 24 218 1.9E-8 T 12-10-2018 ALFP_2187 8ea01adecc4d8a0bde956eb351550016 288 Gene3D G3DSA:1.10.150.240 39 116 1.3E-87 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 ALFP_2187 8ea01adecc4d8a0bde956eb351550016 288 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 118 218 1.6E-10 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 ALFP_2187 8ea01adecc4d8a0bde956eb351550016 288 Hamap MF_01375 Phosphonoacetaldehyde hydrolase [phnX]. 1 288 107.526 T 12-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 ALFP_2187 8ea01adecc4d8a0bde956eb351550016 288 Gene3D G3DSA:3.40.50.1000 22 271 1.3E-87 T 12-10-2018 IPR023214 HAD superfamily ALFP_2187 8ea01adecc4d8a0bde956eb351550016 288 SUPERFAMILY SSF56784 22 273 6.05E-52 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_2187 8ea01adecc4d8a0bde956eb351550016 288 TIGRFAM TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase 21 272 7.6E-96 T 12-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 ALFP_1875 71ba8b03536eea1ab12e8e03338e7e29 397 Pfam PF07690 Major Facilitator Superfamily 17 342 3.0E-25 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_1875 71ba8b03536eea1ab12e8e03338e7e29 397 SUPERFAMILY SSF103473 10 379 6.54E-37 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_1875 71ba8b03536eea1ab12e8e03338e7e29 397 Gene3D G3DSA:1.20.1250.20 8 379 2.6E-33 T 12-10-2018 ALFP_0807 2688c0c1b2d09471199fc7c557edf263 565 Pfam PF13193 AMP-binding enzyme C-terminal domain 474 548 4.4E-19 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain ALFP_0807 2688c0c1b2d09471199fc7c557edf263 565 Gene3D G3DSA:3.40.50.12780 14 461 1.2E-111 T 12-10-2018 ALFP_0807 2688c0c1b2d09471199fc7c557edf263 565 SUPERFAMILY SSF56801 11 560 1.16E-145 T 12-10-2018 ALFP_0807 2688c0c1b2d09471199fc7c557edf263 565 ProSitePatterns PS00455 Putative AMP-binding domain signature. 212 223 - T 12-10-2018 IPR020845 AMP-binding, conserved site ALFP_0807 2688c0c1b2d09471199fc7c557edf263 565 Gene3D G3DSA:3.30.300.310 462 563 1.0E-31 T 12-10-2018 ALFP_0807 2688c0c1b2d09471199fc7c557edf263 565 Pfam PF00501 AMP-binding enzyme 34 465 1.5E-105 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_1622 6aba003df72c84591c490de803f235c3 159 SUPERFAMILY SSF46785 16 154 2.35E-30 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1622 6aba003df72c84591c490de803f235c3 159 Pfam PF01047 MarR family 45 103 3.1E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1622 6aba003df72c84591c490de803f235c3 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 98 114 1.1E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1622 6aba003df72c84591c490de803f235c3 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 128 148 1.1E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1622 6aba003df72c84591c490de803f235c3 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 62 78 1.1E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1622 6aba003df72c84591c490de803f235c3 159 SMART SM00347 38 138 1.4E-14 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1622 6aba003df72c84591c490de803f235c3 159 Gene3D G3DSA:1.10.10.10 11 155 5.2E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2351 94f243c0538cb0049024dacb2908e066 144 Gene3D G3DSA:1.10.10.10 1 135 2.3E-40 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2351 94f243c0538cb0049024dacb2908e066 144 SUPERFAMILY SSF46785 2 127 1.05E-30 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2351 94f243c0538cb0049024dacb2908e066 144 Pfam PF02082 Transcriptional regulator 2 72 2.7E-22 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type ALFP_0016 f9875ddcd2fc627e60972e8e6b4812f3 409 Gene3D G3DSA:3.30.9.10 116 350 4.4E-82 T 12-10-2018 ALFP_0016 f9875ddcd2fc627e60972e8e6b4812f3 409 Pfam PF01266 FAD dependent oxidoreductase 24 383 1.6E-55 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 ALFP_0016 f9875ddcd2fc627e60972e8e6b4812f3 409 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 366 382 4.1E-5 T 12-10-2018 ALFP_0016 f9875ddcd2fc627e60972e8e6b4812f3 409 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 24 46 4.1E-5 T 12-10-2018 ALFP_0016 f9875ddcd2fc627e60972e8e6b4812f3 409 Gene3D G3DSA:3.50.50.60 24 392 4.4E-82 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0016 f9875ddcd2fc627e60972e8e6b4812f3 409 SUPERFAMILY SSF51905 23 404 6.47E-51 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0519 52d986b9008ff6030aa8f39bdc250c78 88 SUPERFAMILY SSF47598 51 86 4.95E-5 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 ALFP_0727 e67e18599f1f09bd6bd7057b2c666cb0 311 Gene3D G3DSA:3.40.190.10 175 281 6.0E-45 T 12-10-2018 ALFP_0727 e67e18599f1f09bd6bd7057b2c666cb0 311 Gene3D G3DSA:1.10.10.10 10 101 1.7E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0727 e67e18599f1f09bd6bd7057b2c666cb0 311 SUPERFAMILY SSF46785 7 89 3.91E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0727 e67e18599f1f09bd6bd7057b2c666cb0 311 Gene3D G3DSA:3.40.190.10 103 301 6.0E-45 T 12-10-2018 ALFP_0727 e67e18599f1f09bd6bd7057b2c666cb0 311 Pfam PF03466 LysR substrate binding domain 100 303 1.5E-32 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0727 e67e18599f1f09bd6bd7057b2c666cb0 311 SUPERFAMILY SSF53850 99 305 1.55E-34 T 12-10-2018 ALFP_0727 e67e18599f1f09bd6bd7057b2c666cb0 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 70 1.2E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0727 e67e18599f1f09bd6bd7057b2c666cb0 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 48 59 3.8E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0727 e67e18599f1f09bd6bd7057b2c666cb0 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 27 38 3.8E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0727 e67e18599f1f09bd6bd7057b2c666cb0 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 48 3.8E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1110 7d999dc8ae21269b45f535ff2a605980 395 Pfam PF00155 Aminotransferase class I and II 31 377 5.1E-53 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_1110 7d999dc8ae21269b45f535ff2a605980 395 SUPERFAMILY SSF53383 2 389 1.48E-107 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_1110 7d999dc8ae21269b45f535ff2a605980 395 Gene3D G3DSA:3.40.640.10 64 287 4.1E-132 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_1110 7d999dc8ae21269b45f535ff2a605980 395 Gene3D G3DSA:3.90.1150.10 288 385 4.1E-132 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_3556 88ef5edd1b97b11af24eed8736fe75e7 158 Pfam PF00583 Acetyltransferase (GNAT) family 32 142 2.0E-13 T 12-10-2018 IPR000182 GNAT domain ALFP_3556 88ef5edd1b97b11af24eed8736fe75e7 158 SUPERFAMILY SSF55729 13 144 1.06E-25 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_3556 88ef5edd1b97b11af24eed8736fe75e7 158 Gene3D G3DSA:3.40.630.30 11 156 7.9E-34 T 12-10-2018 ALFP_2035 f23e0531d9304ce40a027508508c578c 453 Gene3D G3DSA:2.40.50.140 17 90 1.9E-23 T 12-10-2018 ALFP_2035 f23e0531d9304ce40a027508508c578c 453 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 21 453 65.49 T 12-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 ALFP_2035 f23e0531d9304ce40a027508508c578c 453 Gene3D G3DSA:3.40.50.150 91 448 2.7E-101 T 12-10-2018 ALFP_2035 f23e0531d9304ce40a027508508c578c 453 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 380 414 - T 12-10-2018 IPR030390 RNA methyltransferase TrmA, active site ALFP_2035 f23e0531d9304ce40a027508508c578c 453 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 260 448 3.5E-13 T 12-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 ALFP_2035 f23e0531d9304ce40a027508508c578c 453 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 436 446 - T 12-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site ALFP_2035 f23e0531d9304ce40a027508508c578c 453 Gene3D G3DSA:3.40.1350.30 138 280 2.7E-101 T 12-10-2018 ALFP_2035 f23e0531d9304ce40a027508508c578c 453 SUPERFAMILY SSF50249 22 76 9.71E-12 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2035 f23e0531d9304ce40a027508508c578c 453 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 27 446 1.9E-91 T 12-10-2018 ALFP_2035 f23e0531d9304ce40a027508508c578c 453 SUPERFAMILY SSF53335 79 453 4.64E-73 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_2341 447ef74d7270518178b4922698345a7a 294 Gene3D G3DSA:3.40.190.290 85 290 2.6E-57 T 12-10-2018 ALFP_2341 447ef74d7270518178b4922698345a7a 294 Pfam PF03466 LysR substrate binding domain 83 290 8.1E-40 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_2341 447ef74d7270518178b4922698345a7a 294 SUPERFAMILY SSF46785 1 106 8.06E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2341 447ef74d7270518178b4922698345a7a 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 56 8.6E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2341 447ef74d7270518178b4922698345a7a 294 SUPERFAMILY SSF53850 84 292 6.88E-41 T 12-10-2018 ALFP_2341 447ef74d7270518178b4922698345a7a 294 Gene3D G3DSA:1.10.10.10 1 83 2.2E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3090 16da44171a8a04b5f502c4f6fa7e2124 251 Gene3D G3DSA:3.40.50.720 1 249 3.6E-73 T 12-10-2018 ALFP_3090 16da44171a8a04b5f502c4f6fa7e2124 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_3090 16da44171a8a04b5f502c4f6fa7e2124 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 249 5.8E-56 T 12-10-2018 ALFP_3090 16da44171a8a04b5f502c4f6fa7e2124 251 SUPERFAMILY SSF51735 6 249 2.88E-71 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3090 16da44171a8a04b5f502c4f6fa7e2124 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.1E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3090 16da44171a8a04b5f502c4f6fa7e2124 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.1E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3090 16da44171a8a04b5f502c4f6fa7e2124 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.1E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3090 16da44171a8a04b5f502c4f6fa7e2124 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.1E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3090 16da44171a8a04b5f502c4f6fa7e2124 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.1E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3090 16da44171a8a04b5f502c4f6fa7e2124 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.1E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3090 16da44171a8a04b5f502c4f6fa7e2124 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 4.5E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3090 16da44171a8a04b5f502c4f6fa7e2124 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 4.5E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3090 16da44171a8a04b5f502c4f6fa7e2124 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 4.5E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1938 03b52953538003a4198e174751bd04d8 232 SUPERFAMILY SSF47616 90 207 6.82E-34 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily ALFP_1938 03b52953538003a4198e174751bd04d8 232 Gene3D G3DSA:1.20.1050.10 88 195 3.2E-82 T 12-10-2018 ALFP_1938 03b52953538003a4198e174751bd04d8 232 Pfam PF00043 Glutathione S-transferase, C-terminal domain 130 196 1.3E-11 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal ALFP_1938 03b52953538003a4198e174751bd04d8 232 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 81 8.1E-14 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 ALFP_1938 03b52953538003a4198e174751bd04d8 232 SUPERFAMILY SSF52833 1 84 4.75E-22 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_1938 03b52953538003a4198e174751bd04d8 232 Gene3D G3DSA:3.40.30.10 2 202 3.2E-82 T 12-10-2018 ALFP_2934 31b20aa077c9451fb0b052c860ed315c 534 SMART SM00155 424 451 1.4E-5 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 ALFP_2934 31b20aa077c9451fb0b052c860ed315c 534 SMART SM00155 184 211 0.0029 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 ALFP_2934 31b20aa077c9451fb0b052c860ed315c 534 SUPERFAMILY SSF56024 60 258 6.91E-42 T 12-10-2018 ALFP_2934 31b20aa077c9451fb0b052c860ed315c 534 Gene3D G3DSA:3.30.870.10 307 502 7.8E-35 T 12-10-2018 ALFP_2934 31b20aa077c9451fb0b052c860ed315c 534 SUPERFAMILY SSF56024 300 479 1.75E-29 T 12-10-2018 ALFP_2934 31b20aa077c9451fb0b052c860ed315c 534 Pfam PF13091 PLD-like domain 333 477 1.1E-21 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 ALFP_2934 31b20aa077c9451fb0b052c860ed315c 534 Pfam PF13091 PLD-like domain 100 243 3.1E-14 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 ALFP_2934 31b20aa077c9451fb0b052c860ed315c 534 Gene3D G3DSA:3.30.870.10 82 259 1.5E-35 T 12-10-2018 ALFP_3349 bf9df843066fe86b4d943e1c77ff2d5e 199 Gene3D G3DSA:2.60.120.10 76 183 1.8E-25 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_3349 bf9df843066fe86b4d943e1c77ff2d5e 199 SUPERFAMILY SSF47413 2 67 8.31E-18 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_3349 bf9df843066fe86b4d943e1c77ff2d5e 199 Gene3D G3DSA:1.10.260.40 4 75 5.4E-18 T 12-10-2018 ALFP_3349 bf9df843066fe86b4d943e1c77ff2d5e 199 Pfam PF07883 Cupin domain 111 181 2.2E-13 T 12-10-2018 IPR013096 Cupin 2, conserved barrel ALFP_3349 bf9df843066fe86b4d943e1c77ff2d5e 199 SUPERFAMILY SSF51182 71 181 3.52E-23 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_3349 bf9df843066fe86b4d943e1c77ff2d5e 199 Pfam PF01381 Helix-turn-helix 8 57 8.0E-17 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_3349 bf9df843066fe86b4d943e1c77ff2d5e 199 SMART SM00530 7 62 1.7E-17 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_2874 855a8e3dd9f458299280310405c517bd 329 PIRSF PIRSF000428 18 317 1.3E-83 T 12-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 ALFP_2874 855a8e3dd9f458299280310405c517bd 329 Gene3D G3DSA:3.40.718.10 18 315 1.4E-96 T 12-10-2018 ALFP_2874 855a8e3dd9f458299280310405c517bd 329 Pfam PF01515 Phosphate acetyl/butaryl transferase 99 311 1.0E-40 T 12-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 ALFP_2874 855a8e3dd9f458299280310405c517bd 329 SUPERFAMILY SSF53659 21 315 7.67E-65 T 12-10-2018 ALFP_0682 53c1265ee3cf45ba153aec18d11101ac 327 PIRSF PIRSF006470 1 327 1.3E-132 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 ALFP_0682 53c1265ee3cf45ba153aec18d11101ac 327 Gene3D G3DSA:3.40.190.170 24 324 3.5E-105 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_0682 53c1265ee3cf45ba153aec18d11101ac 327 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 28 283 2.2E-99 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 ALFP_0682 53c1265ee3cf45ba153aec18d11101ac 327 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 28 311 9.5E-108 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_2723 ff7b21ecc880c74a489efb3b69abfb01 547 SUPERFAMILY SSF53474 168 466 2.22E-39 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2723 ff7b21ecc880c74a489efb3b69abfb01 547 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 57 225 1.6E-57 T 12-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 ALFP_3593 57a0b5b5057085399347a47359c95c05 397 Gene3D G3DSA:1.20.1250.20 11 392 1.9E-77 T 12-10-2018 ALFP_3593 57a0b5b5057085399347a47359c95c05 397 Pfam PF07690 Major Facilitator Superfamily 24 324 4.6E-31 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_3593 57a0b5b5057085399347a47359c95c05 397 ProSitePatterns PS00216 Sugar transport proteins signature 1. 76 92 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ALFP_3593 57a0b5b5057085399347a47359c95c05 397 SUPERFAMILY SSF103473 16 393 4.71E-57 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_3188 5c692413f54d874ed3b3028257ed9b30 605 Gene3D G3DSA:2.170.130.10 20 147 4.5E-37 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_3188 5c692413f54d874ed3b3028257ed9b30 605 Gene3D G3DSA:2.40.170.20 156 604 5.5E-100 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_3188 5c692413f54d874ed3b3028257ed9b30 605 Pfam PF07715 TonB-dependent Receptor Plug Domain 37 142 6.3E-30 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_3188 5c692413f54d874ed3b3028257ed9b30 605 SUPERFAMILY SSF56935 23 603 5.07E-110 T 12-10-2018 ALFP_3188 5c692413f54d874ed3b3028257ed9b30 605 Pfam PF00593 TonB dependent receptor 169 603 2.0E-34 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_2603 55178df98eda134b1eb700de3a4132d7 761 Pfam PF12805 FUSC-like inner membrane protein yccS 75 350 1.5E-58 T 12-10-2018 IPR032692 Integral membrane protein YccS, N-terminal ALFP_2603 55178df98eda134b1eb700de3a4132d7 761 Pfam PF13515 Fusaric acid resistance protein-like 436 548 3.6E-14 T 12-10-2018 ALFP_1582 c88d4d77c466c923d6ec039d621e417f 344 Gene3D G3DSA:3.40.50.150 134 326 1.7E-38 T 12-10-2018 ALFP_1582 c88d4d77c466c923d6ec039d621e417f 344 Gene3D G3DSA:1.10.10.10 8 88 4.0E-5 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1582 c88d4d77c466c923d6ec039d621e417f 344 Pfam PF13489 Methyltransferase domain 171 322 4.1E-16 T 12-10-2018 ALFP_1582 c88d4d77c466c923d6ec039d621e417f 344 SUPERFAMILY SSF53335 166 338 3.99E-33 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_3130 068fcc9e91b1f71d00ed024e933b38e5 67 Gene3D G3DSA:1.10.1470.10 1 65 1.5E-28 T 12-10-2018 IPR036629 YjbJ superfamily ALFP_3130 068fcc9e91b1f71d00ed024e933b38e5 67 PIRSF PIRSF039008 1 66 1.4E-27 T 12-10-2018 IPR026042 Stress response protein YjbJ ALFP_3130 068fcc9e91b1f71d00ed024e933b38e5 67 SUPERFAMILY SSF69047 1 66 3.4E-24 T 12-10-2018 IPR036629 YjbJ superfamily ALFP_3130 068fcc9e91b1f71d00ed024e933b38e5 67 Pfam PF05532 CsbD-like 4 56 3.9E-17 T 12-10-2018 IPR008462 CsbD-like domain ALFP_0192 0556a7db9277007964cc3157de415aec 226 Gene3D G3DSA:3.40.50.1000 5 202 5.9E-52 T 12-10-2018 IPR023214 HAD superfamily ALFP_0192 0556a7db9277007964cc3157de415aec 226 SUPERFAMILY SSF56784 3 218 7.97E-47 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_0192 0556a7db9277007964cc3157de415aec 226 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 5 186 8.1E-14 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 ALFP_0192 0556a7db9277007964cc3157de415aec 226 Gene3D G3DSA:1.10.150.240 18 84 5.9E-52 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 ALFP_0192 0556a7db9277007964cc3157de415aec 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 186 2.5E-21 T 12-10-2018 ALFP_3293 003cce7df9480fda9a25cc048296726d 473 SUPERFAMILY SSF47917 357 472 3.14E-53 T 12-10-2018 ALFP_3293 003cce7df9480fda9a25cc048296726d 473 SMART SM00382 147 339 0.003 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3293 003cce7df9480fda9a25cc048296726d 473 SUPERFAMILY SSF50615 3 80 2.12E-23 T 12-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 ALFP_3293 003cce7df9480fda9a25cc048296726d 473 Gene3D G3DSA:3.40.50.300 81 356 1.7E-111 T 12-10-2018 ALFP_3293 003cce7df9480fda9a25cc048296726d 473 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 345 354 - T 12-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 ALFP_3293 003cce7df9480fda9a25cc048296726d 473 Gene3D G3DSA:1.10.1140.10 357 473 6.8E-58 T 12-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 ALFP_3293 003cce7df9480fda9a25cc048296726d 473 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 135 354 1.7E-59 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 ALFP_3293 003cce7df9480fda9a25cc048296726d 473 SUPERFAMILY SSF52540 82 359 5.14E-84 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3293 003cce7df9480fda9a25cc048296726d 473 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 76 6.9E-17 T 12-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 ALFP_3293 003cce7df9480fda9a25cc048296726d 473 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 472 55.986 T 12-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 ALFP_3293 003cce7df9480fda9a25cc048296726d 473 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 471 7.9E-244 T 12-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 ALFP_3293 003cce7df9480fda9a25cc048296726d 473 Gene3D G3DSA:2.40.10.170 1 80 1.9E-26 T 12-10-2018 ALFP_0064 626f1a5662d15c9a3018c1c71f7960f1 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 323 7.0E-63 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0064 626f1a5662d15c9a3018c1c71f7960f1 327 PIRSF PIRSF017082 1 326 1.8E-66 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0064 626f1a5662d15c9a3018c1c71f7960f1 327 SUPERFAMILY SSF53850 113 290 2.58E-9 T 12-10-2018 ALFP_0064 626f1a5662d15c9a3018c1c71f7960f1 327 Gene3D G3DSA:3.40.190.150 33 317 5.6E-85 T 12-10-2018 ALFP_0064 626f1a5662d15c9a3018c1c71f7960f1 327 Gene3D G3DSA:3.40.190.10 128 251 5.6E-85 T 12-10-2018 ALFP_1717 0825c80c08828ff64f23800fa7d6833a 482 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 15 473 3.0E-196 T 12-10-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 ALFP_1717 0825c80c08828ff64f23800fa7d6833a 482 SUPERFAMILY SSF101960 36 479 4.58E-139 T 12-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily ALFP_1717 0825c80c08828ff64f23800fa7d6833a 482 Pfam PF01458 Uncharacterized protein family (UPF0051) 220 453 1.4E-67 T 12-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 ALFP_3362 61930a10496035df0ed35c75a54bc0e2 656 TIGRFAM TIGR04244 nitrous_NosZ_RR: nitrous-oxide reductase, TAT-dependent 33 653 0.0 T 12-10-2018 IPR023644 Nitrous-oxide reductase GO:0005507|GO:0005509|GO:0050304|GO:0055114 KEGG: 00910+1.7.2.4|MetaCyc: PWY-6748|MetaCyc: PWY-7084 ALFP_3362 61930a10496035df0ed35c75a54bc0e2 656 SUPERFAMILY SSF49503 526 654 1.34E-35 T 12-10-2018 IPR008972 Cupredoxin ALFP_3362 61930a10496035df0ed35c75a54bc0e2 656 Gene3D G3DSA:2.130.10.10 71 534 1.2E-199 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 ALFP_3362 61930a10496035df0ed35c75a54bc0e2 656 Gene3D G3DSA:2.60.40.420 535 653 3.1E-34 T 12-10-2018 IPR008972 Cupredoxin ALFP_3362 61930a10496035df0ed35c75a54bc0e2 656 Hamap MF_00716 Nitrous-oxide reductase [nosZ]. 24 654 56.576 T 12-10-2018 IPR023644 Nitrous-oxide reductase GO:0005507|GO:0005509|GO:0050304|GO:0055114 KEGG: 00910+1.7.2.4|MetaCyc: PWY-6748|MetaCyc: PWY-7084 ALFP_3362 61930a10496035df0ed35c75a54bc0e2 656 SUPERFAMILY SSF50974 75 521 1.57E-139 T 12-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 ALFP_0797 d99e2454786d368525adbfc1d2aef406 408 Gene3D G3DSA:3.30.1490.110 86 168 2.6E-123 T 12-10-2018 ALFP_0797 d99e2454786d368525adbfc1d2aef406 408 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 8 376 1.9E-149 T 12-10-2018 IPR020823 Cell division protein FtsA ALFP_0797 d99e2454786d368525adbfc1d2aef406 408 SMART SM00842 9 195 1.3E-105 T 12-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 ALFP_0797 d99e2454786d368525adbfc1d2aef406 408 SUPERFAMILY SSF53067 198 375 5.94E-48 T 12-10-2018 ALFP_0797 d99e2454786d368525adbfc1d2aef406 408 SUPERFAMILY SSF53067 7 196 2.33E-62 T 12-10-2018 ALFP_0797 d99e2454786d368525adbfc1d2aef406 408 Pfam PF14450 Cell division protein FtsA 10 192 3.1E-10 T 12-10-2018 ALFP_0797 d99e2454786d368525adbfc1d2aef406 408 PIRSF PIRSF003101 1 408 3.7E-153 T 12-10-2018 IPR020823 Cell division protein FtsA ALFP_0797 d99e2454786d368525adbfc1d2aef406 408 Gene3D G3DSA:3.90.640.10 234 299 2.6E-123 T 12-10-2018 ALFP_0797 d99e2454786d368525adbfc1d2aef406 408 Pfam PF02491 SHS2 domain inserted in FTSA 84 161 1.4E-31 T 12-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 ALFP_0797 d99e2454786d368525adbfc1d2aef406 408 Hamap MF_02033 Cell division protein FtsA [ftsA]. 5 406 30.348 T 12-10-2018 IPR020823 Cell division protein FtsA ALFP_0797 d99e2454786d368525adbfc1d2aef406 408 Gene3D G3DSA:3.30.420.40 196 351 2.6E-123 T 12-10-2018 ALFP_0797 d99e2454786d368525adbfc1d2aef406 408 Gene3D G3DSA:3.30.420.40 12 371 2.6E-123 T 12-10-2018 ALFP_0797 d99e2454786d368525adbfc1d2aef406 408 Pfam PF14450 Cell division protein FtsA 206 373 4.3E-25 T 12-10-2018 ALFP_0286 8cc3e6b5fb0819418adcd5ab769d1917 401 Gene3D G3DSA:3.60.120.10 9 400 1.3E-114 T 12-10-2018 IPR005801 ADC synthase GO:0009058 ALFP_0286 8cc3e6b5fb0819418adcd5ab769d1917 401 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 121 393 2.7E-79 T 12-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 ALFP_0286 8cc3e6b5fb0819418adcd5ab769d1917 401 Pfam PF00425 chorismate binding enzyme 126 385 1.6E-70 T 12-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal ALFP_0286 8cc3e6b5fb0819418adcd5ab769d1917 401 SUPERFAMILY SSF56322 25 396 1.14E-86 T 12-10-2018 IPR005801 ADC synthase GO:0009058 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 SUPERFAMILY SSF47807 167 283 2.69E-32 T 12-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 SMART SM00482 664 869 3.4E-109 T 12-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 SMART SM00474 310 496 6.3E-30 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 167 255 5.3E-27 T 12-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 SUPERFAMILY SSF53098 309 496 1.39E-47 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 Gene3D G3DSA:3.40.50.1010 5 276 1.1E-91 T 12-10-2018 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 PRINTS PR00868 DNA-polymerase family A (pol I) signature 731 756 2.3E-66 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 PRINTS PR00868 DNA-polymerase family A (pol I) signature 852 865 2.3E-66 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 PRINTS PR00868 DNA-polymerase family A (pol I) signature 707 720 2.3E-66 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 PRINTS PR00868 DNA-polymerase family A (pol I) signature 677 700 2.3E-66 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 PRINTS PR00868 DNA-polymerase family A (pol I) signature 768 779 2.3E-66 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 PRINTS PR00868 DNA-polymerase family A (pol I) signature 822 838 2.3E-66 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 PRINTS PR00868 DNA-polymerase family A (pol I) signature 633 655 2.3E-66 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 PRINTS PR00868 DNA-polymerase family A (pol I) signature 790 801 2.3E-66 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 SUPERFAMILY SSF88723 1 166 2.09E-57 T 12-10-2018 IPR029060 PIN-like domain superfamily ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 ProSitePatterns PS00447 DNA polymerase family A signature. 731 750 - T 12-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 Pfam PF00476 DNA polymerase family A 529 902 1.8E-146 T 12-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 Gene3D G3DSA:1.10.150.20 170 242 1.1E-91 T 12-10-2018 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 Gene3D G3DSA:1.10.150.20 686 829 5.8E-104 T 12-10-2018 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 5 166 8.6E-53 T 12-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 Pfam PF01612 3'-5' exonuclease 310 495 4.3E-35 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 SMART SM00475 2 257 5.6E-119 T 12-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 Gene3D G3DSA:3.30.70.370 644 901 5.8E-104 T 12-10-2018 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 Gene3D G3DSA:3.30.420.10 308 520 1.2E-59 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 SMART SM00279 169 204 1.7E-15 T 12-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 Gene3D G3DSA:1.20.1060.10 521 636 1.2E-41 T 12-10-2018 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 SUPERFAMILY SSF56672 505 905 4.45E-146 T 12-10-2018 ALFP_1086 5450bab76d77789c22ece31be2f627e7 905 TIGRFAM TIGR00593 pola: DNA polymerase I 5 905 9.0E-267 T 12-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_2955 fd0911c87e3c93d5cb61732282d30e6b 323 Gene3D G3DSA:3.20.20.140 4 320 1.1E-96 T 12-10-2018 ALFP_2955 fd0911c87e3c93d5cb61732282d30e6b 323 SUPERFAMILY SSF51556 7 321 9.64E-81 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_2955 fd0911c87e3c93d5cb61732282d30e6b 323 Pfam PF04909 Amidohydrolase 41 320 3.6E-47 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 ALFP_3320 f5c09f99c6c80c04a398b05eb936d642 615 Gene3D G3DSA:1.20.1730.10 25 551 3.1E-51 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily ALFP_3320 f5c09f99c6c80c04a398b05eb936d642 615 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 176 201 - T 12-10-2018 IPR018212 Sodium/solute symporter, conserved site ALFP_3320 f5c09f99c6c80c04a398b05eb936d642 615 Pfam PF00474 Sodium:solute symporter family 61 487 2.0E-76 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 ALFP_1966 e688e5397a16f7fcd3122a56873ec946 440 Gene3D G3DSA:2.30.42.10 214 299 2.8E-14 T 12-10-2018 ALFP_1966 e688e5397a16f7fcd3122a56873ec946 440 Gene3D G3DSA:2.30.42.10 121 201 3.7E-11 T 12-10-2018 ALFP_1966 e688e5397a16f7fcd3122a56873ec946 440 SMART SM00228 114 184 0.0072 T 12-10-2018 IPR001478 PDZ domain GO:0005515 ALFP_1966 e688e5397a16f7fcd3122a56873ec946 440 SMART SM00228 208 275 9.9E-5 T 12-10-2018 IPR001478 PDZ domain GO:0005515 ALFP_1966 e688e5397a16f7fcd3122a56873ec946 440 Pfam PF02163 Peptidase family M50 7 426 2.5E-81 T 12-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 ALFP_1966 e688e5397a16f7fcd3122a56873ec946 440 Pfam PF13180 PDZ domain 126 181 5.8E-7 T 12-10-2018 IPR001478 PDZ domain GO:0005515 ALFP_1966 e688e5397a16f7fcd3122a56873ec946 440 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 2 439 3.6E-110 T 12-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 ALFP_1966 e688e5397a16f7fcd3122a56873ec946 440 SUPERFAMILY SSF50156 85 182 2.1E-14 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 ALFP_1966 e688e5397a16f7fcd3122a56873ec946 440 SUPERFAMILY SSF50156 218 285 8.68E-12 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 ALFP_3306 be6b14daa0d587c9efe237d35a287be6 108 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 5 102 7.1E-45 T 12-10-2018 IPR004480 Monothiol glutaredoxin-related ALFP_3306 be6b14daa0d587c9efe237d35a287be6 108 Gene3D G3DSA:3.40.30.10 8 104 1.3E-33 T 12-10-2018 ALFP_3306 be6b14daa0d587c9efe237d35a287be6 108 SUPERFAMILY SSF52833 1 106 1.12E-34 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_3306 be6b14daa0d587c9efe237d35a287be6 108 Pfam PF00462 Glutaredoxin 17 82 3.6E-18 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 ALFP_3306 be6b14daa0d587c9efe237d35a287be6 108 PIRSF PIRSF005894 1 108 1.2E-47 T 12-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 ALFP_2165 6fff4288f4f10fa176835704697dc7e1 417 SUPERFAMILY SSF53383 14 415 2.45E-84 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2165 6fff4288f4f10fa176835704697dc7e1 417 PIRSF PIRSF001434 1 417 1.1E-110 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 ALFP_2165 6fff4288f4f10fa176835704697dc7e1 417 Gene3D G3DSA:3.40.640.10 11 280 1.6E-62 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2165 6fff4288f4f10fa176835704697dc7e1 417 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 14 414 4.2E-98 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 ALFP_2165 6fff4288f4f10fa176835704697dc7e1 417 Gene3D G3DSA:3.90.1150.10 281 415 1.5E-39 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_1494 8a6b95e6e50054140b1e0dc096cefcc9 303 SUPERFAMILY SSF103481 46 146 3.79E-14 T 12-10-2018 ALFP_1494 8a6b95e6e50054140b1e0dc096cefcc9 303 SUPERFAMILY SSF103481 211 302 2.62E-12 T 12-10-2018 ALFP_1494 8a6b95e6e50054140b1e0dc096cefcc9 303 Pfam PF00892 EamA-like transporter family 15 145 3.3E-22 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_1494 8a6b95e6e50054140b1e0dc096cefcc9 303 Pfam PF00892 EamA-like transporter family 160 300 1.8E-14 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_1297 50b4ec2f49ef8108c1b7ad2216fe870b 431 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 39 151 1.6E-11 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ALFP_1297 50b4ec2f49ef8108c1b7ad2216fe870b 431 SUPERFAMILY SSF51905 39 356 2.95E-28 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1297 50b4ec2f49ef8108c1b7ad2216fe870b 431 Gene3D G3DSA:3.50.50.60 40 348 6.1E-110 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1297 50b4ec2f49ef8108c1b7ad2216fe870b 431 SUPERFAMILY SSF55424 360 428 9.06E-18 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 ALFP_1297 50b4ec2f49ef8108c1b7ad2216fe870b 431 Gene3D G3DSA:3.90.760.10 359 428 3.2E-22 T 12-10-2018 IPR037092 Flavocytochrome c sulphide dehydrogenase, flavin-binding domain superfamily GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 ALFP_1297 50b4ec2f49ef8108c1b7ad2216fe870b 431 SUPERFAMILY SSF51905 150 286 1.1E-41 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1297 50b4ec2f49ef8108c1b7ad2216fe870b 431 Gene3D G3DSA:3.50.50.60 152 286 6.1E-110 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1297 50b4ec2f49ef8108c1b7ad2216fe870b 431 Pfam PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding 360 427 1.0E-23 T 12-10-2018 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 ALFP_3649 137e49d9b751190b5b7e4c3bacebdcb8 484 Gene3D G3DSA:3.40.1010.10 216 334 7.0E-44 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 ALFP_3649 137e49d9b751190b5b7e4c3bacebdcb8 484 Pfam PF13241 Putative NAD(P)-binding 6 115 5.0E-29 T 12-10-2018 ALFP_3649 137e49d9b751190b5b7e4c3bacebdcb8 484 Hamap MF_01646 Siroheme synthase [cysG]. 1 463 46.699 T 12-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 ALFP_3649 137e49d9b751190b5b7e4c3bacebdcb8 484 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 299 332 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 ALFP_3649 137e49d9b751190b5b7e4c3bacebdcb8 484 Gene3D G3DSA:3.40.50.720 1 111 3.4E-36 T 12-10-2018 ALFP_3649 137e49d9b751190b5b7e4c3bacebdcb8 484 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 223 237 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 ALFP_3649 137e49d9b751190b5b7e4c3bacebdcb8 484 SUPERFAMILY SSF53790 216 460 4.71E-75 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 ALFP_3649 137e49d9b751190b5b7e4c3bacebdcb8 484 PIRSF PIRSF036426 1 469 1.9E-185 T 12-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 ALFP_3649 137e49d9b751190b5b7e4c3bacebdcb8 484 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 219 430 1.5E-49 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 ALFP_3649 137e49d9b751190b5b7e4c3bacebdcb8 484 SUPERFAMILY SSF75615 114 207 1.96E-21 T 12-10-2018 ALFP_3649 137e49d9b751190b5b7e4c3bacebdcb8 484 SUPERFAMILY SSF51735 1 112 1.89E-25 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3649 137e49d9b751190b5b7e4c3bacebdcb8 484 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 218 452 5.0E-89 T 12-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 ALFP_3649 137e49d9b751190b5b7e4c3bacebdcb8 484 Gene3D G3DSA:3.30.950.10 335 477 1.7E-43 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 ALFP_3649 137e49d9b751190b5b7e4c3bacebdcb8 484 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 207 9.8E-72 T 12-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 ALFP_3649 137e49d9b751190b5b7e4c3bacebdcb8 484 Pfam PF14824 Sirohaem biosynthesis protein central 119 145 4.7E-7 T 12-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 ALFP_3649 137e49d9b751190b5b7e4c3bacebdcb8 484 Pfam PF10414 Sirohaem synthase dimerisation region 150 207 4.9E-12 T 12-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 ALFP_3649 137e49d9b751190b5b7e4c3bacebdcb8 484 Gene3D G3DSA:3.30.160.110 113 147 1.2E-16 T 12-10-2018 ALFP_3263 fd41d8d34728f10a059cca25e2813b14 226 Gene3D G3DSA:3.40.50.2300 1 131 1.4E-31 T 12-10-2018 ALFP_3263 fd41d8d34728f10a059cca25e2813b14 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 223 7.9E-16 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_3263 fd41d8d34728f10a059cca25e2813b14 226 Pfam PF00072 Response regulator receiver domain 4 115 2.5E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_3263 fd41d8d34728f10a059cca25e2813b14 226 Gene3D G3DSA:1.10.10.10 132 225 4.6E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3263 fd41d8d34728f10a059cca25e2813b14 226 SMART SM00448 2 115 7.2E-36 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_3263 fd41d8d34728f10a059cca25e2813b14 226 SUPERFAMILY SSF52172 1 175 6.55E-37 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_3263 fd41d8d34728f10a059cca25e2813b14 226 SMART SM00862 148 223 1.5E-13 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_1868 674ec3acf31c1131b883fd4eca9e1721 873 Gene3D G3DSA:3.40.50.300 653 862 6.5E-13 T 12-10-2018 ALFP_1868 674ec3acf31c1131b883fd4eca9e1721 873 SUPERFAMILY SSF52540 1 855 7.23E-14 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1868 674ec3acf31c1131b883fd4eca9e1721 873 SUPERFAMILY SSF57997 565 744 2.35E-5 T 12-10-2018 ALFP_1868 674ec3acf31c1131b883fd4eca9e1721 873 Pfam PF13514 AAA domain 1 50 4.8E-6 T 12-10-2018 IPR038734 Uncharacterized protein YhaN, AAA domain ALFP_1450 468793de9c1104676ebc74bebb0b26f5 404 Gene3D G3DSA:1.20.1250.20 23 400 6.8E-41 T 12-10-2018 ALFP_1450 468793de9c1104676ebc74bebb0b26f5 404 Pfam PF07690 Major Facilitator Superfamily 232 399 1.2E-14 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_1450 468793de9c1104676ebc74bebb0b26f5 404 Pfam PF07690 Major Facilitator Superfamily 29 213 1.4E-12 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_1450 468793de9c1104676ebc74bebb0b26f5 404 SUPERFAMILY SSF103473 25 400 7.85E-48 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_1450 468793de9c1104676ebc74bebb0b26f5 404 Hamap MF_02091 Uncharacterized MFS-type transporter YfcJ [yfcJ]. 25 402 36.177 T 12-10-2018 IPR037541 Uncharacterized MFS-type transporter YfcJ ALFP_0241 74762c46a1d182e3a2be45ebcd49eb1d 348 Gene3D G3DSA:3.40.190.170 36 338 6.2E-69 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_0241 74762c46a1d182e3a2be45ebcd49eb1d 348 SUPERFAMILY SSF53850 116 234 3.68E-6 T 12-10-2018 ALFP_0241 74762c46a1d182e3a2be45ebcd49eb1d 348 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 49 280 9.6E-32 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_3422 63a4f48fa13f395bfe2c88959bb032d6 158 Pfam PF02470 MlaD protein 39 116 9.2E-21 T 12-10-2018 IPR003399 Mce/MlaD ALFP_3422 63a4f48fa13f395bfe2c88959bb032d6 158 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 3 147 4.6E-57 T 12-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 ALFP_0739 4ace1b3b450b563337ff7712679b6875 337 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 328 8.4E-126 T 12-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0739 4ace1b3b450b563337ff7712679b6875 337 SUPERFAMILY SSF55347 155 317 7.74E-69 T 12-10-2018 ALFP_0739 4ace1b3b450b563337ff7712679b6875 337 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 160 316 3.0E-63 T 12-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0739 4ace1b3b450b563337ff7712679b6875 337 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 149 167 5.5E-38 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0739 4ace1b3b450b563337ff7712679b6875 337 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 5.5E-38 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0739 4ace1b3b450b563337ff7712679b6875 337 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 176 192 5.5E-38 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0739 4ace1b3b450b563337ff7712679b6875 337 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 5.5E-38 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0739 4ace1b3b450b563337ff7712679b6875 337 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 5.5E-38 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0739 4ace1b3b450b563337ff7712679b6875 337 PIRSF PIRSF000149 1 337 1.3E-131 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0739 4ace1b3b450b563337ff7712679b6875 337 SMART SM00846 3 155 2.3E-87 T 12-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0739 4ace1b3b450b563337ff7712679b6875 337 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 106 7.3E-36 T 12-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0739 4ace1b3b450b563337ff7712679b6875 337 SUPERFAMILY SSF51735 1 154 7.14E-59 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0739 4ace1b3b450b563337ff7712679b6875 337 Gene3D G3DSA:3.40.50.720 4 328 2.6E-145 T 12-10-2018 ALFP_0739 4ace1b3b450b563337ff7712679b6875 337 Gene3D G3DSA:3.30.360.10 154 318 2.6E-145 T 12-10-2018 ALFP_0739 4ace1b3b450b563337ff7712679b6875 337 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 153 160 - T 12-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0951 978a950aee001a59e0988bc8855967be 614 ProSitePatterns PS00211 ABC transporters family signature. 503 517 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0951 978a950aee001a59e0988bc8855967be 614 Pfam PF00005 ABC transporter 378 531 1.0E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0951 978a950aee001a59e0988bc8855967be 614 SUPERFAMILY SSF52540 350 601 2.19E-87 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0951 978a950aee001a59e0988bc8855967be 614 SUPERFAMILY SSF90123 21 522 5.76E-47 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_0951 978a950aee001a59e0988bc8855967be 614 Pfam PF00664 ABC transporter transmembrane region 41 307 3.4E-17 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 ALFP_0951 978a950aee001a59e0988bc8855967be 614 Gene3D G3DSA:1.20.1560.10 15 348 1.0E-26 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_0951 978a950aee001a59e0988bc8855967be 614 SMART SM00382 386 577 2.0E-20 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0951 978a950aee001a59e0988bc8855967be 614 Gene3D G3DSA:3.40.50.300 350 604 9.2E-90 T 12-10-2018 ALFP_1701 d68566bd2c4388bc58d800cb4b4ed5b9 570 Pfam PF05524 PEP-utilising enzyme, N-terminal 5 128 1.5E-28 T 12-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 ALFP_1701 d68566bd2c4388bc58d800cb4b4ed5b9 570 SUPERFAMILY SSF52009 127 251 1.57E-32 T 12-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 ALFP_1701 d68566bd2c4388bc58d800cb4b4ed5b9 570 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 451 469 - T 12-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 ALFP_1701 d68566bd2c4388bc58d800cb4b4ed5b9 570 Gene3D G3DSA:1.10.274.10 23 148 2.3E-71 T 12-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 ALFP_1701 d68566bd2c4388bc58d800cb4b4ed5b9 570 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 189 200 - T 12-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 ALFP_1701 d68566bd2c4388bc58d800cb4b4ed5b9 570 Gene3D G3DSA:3.20.20.60 239 569 1.6E-111 T 12-10-2018 ALFP_1701 d68566bd2c4388bc58d800cb4b4ed5b9 570 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 256 542 6.8E-108 T 12-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 ALFP_1701 d68566bd2c4388bc58d800cb4b4ed5b9 570 PIRSF PIRSF000732 1 569 1.0E-201 T 12-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 ALFP_1701 d68566bd2c4388bc58d800cb4b4ed5b9 570 SUPERFAMILY SSF51621 254 545 4.71E-99 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 ALFP_1701 d68566bd2c4388bc58d800cb4b4ed5b9 570 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 504 516 1.0E-25 T 12-10-2018 ALFP_1701 d68566bd2c4388bc58d800cb4b4ed5b9 570 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 451 466 1.0E-25 T 12-10-2018 ALFP_1701 d68566bd2c4388bc58d800cb4b4ed5b9 570 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 298 317 1.0E-25 T 12-10-2018 ALFP_1701 d68566bd2c4388bc58d800cb4b4ed5b9 570 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 468 483 1.0E-25 T 12-10-2018 ALFP_1701 d68566bd2c4388bc58d800cb4b4ed5b9 570 Pfam PF00391 PEP-utilising enzyme, mobile domain 158 230 1.4E-21 T 12-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 ALFP_1701 d68566bd2c4388bc58d800cb4b4ed5b9 570 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 5 557 8.2E-164 T 12-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 ALFP_1701 d68566bd2c4388bc58d800cb4b4ed5b9 570 SUPERFAMILY SSF47831 26 145 2.22E-33 T 12-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 ALFP_1701 d68566bd2c4388bc58d800cb4b4ed5b9 570 Gene3D G3DSA:3.50.30.10 7 238 2.3E-71 T 12-10-2018 ALFP_2025 ed34873a0acf5fdd28032fa474c6d880 191 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 9 186 20.304 T 12-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 ALFP_2025 ed34873a0acf5fdd28032fa474c6d880 191 Gene3D G3DSA:3.40.1410.10 3 185 5.4E-32 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily ALFP_2025 ed34873a0acf5fdd28032fa474c6d880 191 Pfam PF04345 Chorismate lyase 19 186 3.8E-13 T 12-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 ALFP_2025 ed34873a0acf5fdd28032fa474c6d880 191 SUPERFAMILY SSF64288 9 184 3.77E-36 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily ALFP_3212 5413204c26851cc11ef77dc523bad4e9 282 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 49 280 35.506 T 12-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 ALFP_3212 5413204c26851cc11ef77dc523bad4e9 282 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 58 278 5.3E-75 T 12-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 ALFP_3212 5413204c26851cc11ef77dc523bad4e9 282 Gene3D G3DSA:3.40.50.150 64 281 6.2E-66 T 12-10-2018 ALFP_3212 5413204c26851cc11ef77dc523bad4e9 282 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 189 203 - T 12-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 ALFP_3212 5413204c26851cc11ef77dc523bad4e9 282 SUPERFAMILY SSF53335 51 277 7.19E-45 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_3212 5413204c26851cc11ef77dc523bad4e9 282 Pfam PF01209 ubiE/COQ5 methyltransferase family 54 279 4.0E-83 T 12-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 ALFP_3212 5413204c26851cc11ef77dc523bad4e9 282 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 69 84 - T 12-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 ALFP_2994 66c988c069b71ad7b6daac1380ea6771 466 SUPERFAMILY SSF53756 3 448 3.89E-118 T 12-10-2018 ALFP_2994 66c988c069b71ad7b6daac1380ea6771 466 Gene3D G3DSA:3.40.50.2000 19 444 1.7E-138 T 12-10-2018 ALFP_2994 66c988c069b71ad7b6daac1380ea6771 466 Pfam PF00982 Glycosyltransferase family 20 19 448 1.7E-115 T 12-10-2018 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 KEGG: 00500+2.4.1.15 ALFP_2994 66c988c069b71ad7b6daac1380ea6771 466 Gene3D G3DSA:3.40.50.2000 225 433 1.7E-138 T 12-10-2018 ALFP_0878 63cb600bad4ffeaa14ff277969512780 119 Gene3D G3DSA:3.30.1310.10 8 119 8.9E-45 T 12-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily ALFP_0878 63cb600bad4ffeaa14ff277969512780 119 Pfam PF02575 YbaB/EbfC DNA-binding family 21 109 1.2E-35 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family ALFP_0878 63cb600bad4ffeaa14ff277969512780 119 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 15 108 23.021 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family ALFP_0878 63cb600bad4ffeaa14ff277969512780 119 SUPERFAMILY SSF82607 21 113 5.75E-35 T 12-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily ALFP_0878 63cb600bad4ffeaa14ff277969512780 119 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 13 115 2.4E-32 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family ALFP_0878 63cb600bad4ffeaa14ff277969512780 119 PIRSF PIRSF004555 13 119 2.3E-37 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family ALFP_0701 f2e824bd7696a29553735f0afae38461 293 Pfam PF00571 CBS domain 141 190 2.7E-4 T 12-10-2018 IPR000644 CBS domain ALFP_0701 f2e824bd7696a29553735f0afae38461 293 Pfam PF00571 CBS domain 73 130 4.5E-4 T 12-10-2018 IPR000644 CBS domain ALFP_0701 f2e824bd7696a29553735f0afae38461 293 SUPERFAMILY SSF54631 68 204 3.54E-29 T 12-10-2018 ALFP_0701 f2e824bd7696a29553735f0afae38461 293 Gene3D G3DSA:3.10.580.10 51 197 7.3E-53 T 12-10-2018 ALFP_0701 f2e824bd7696a29553735f0afae38461 293 SUPERFAMILY SSF56176 204 288 1.23E-20 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 ALFP_0701 f2e824bd7696a29553735f0afae38461 293 SMART SM01091 206 284 3.4E-24 T 12-10-2018 IPR005170 Transporter-associated domain ALFP_0701 f2e824bd7696a29553735f0afae38461 293 Gene3D G3DSA:3.30.465.10 198 283 5.9E-25 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 ALFP_0701 f2e824bd7696a29553735f0afae38461 293 Pfam PF03471 Transporter associated domain 209 282 3.7E-18 T 12-10-2018 IPR005170 Transporter-associated domain ALFP_3510 78fc8700d2f51e359c03091c3c600339 608 Gene3D G3DSA:3.40.50.10490 446 593 2.6E-140 T 12-10-2018 ALFP_3510 78fc8700d2f51e359c03091c3c600339 608 Pfam PF01380 SIS domain 292 416 1.8E-26 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 ALFP_3510 78fc8700d2f51e359c03091c3c600339 608 Pfam PF01380 SIS domain 462 588 4.0E-26 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 ALFP_3510 78fc8700d2f51e359c03091c3c600339 608 Gene3D G3DSA:3.40.50.10490 250 607 2.6E-140 T 12-10-2018 ALFP_3510 78fc8700d2f51e359c03091c3c600339 608 Pfam PF13522 Glutamine amidotransferase domain 61 193 1.3E-22 T 12-10-2018 ALFP_3510 78fc8700d2f51e359c03091c3c600339 608 SUPERFAMILY SSF53697 246 608 5.2E-109 T 12-10-2018 ALFP_3510 78fc8700d2f51e359c03091c3c600339 608 SUPERFAMILY SSF56235 2 236 5.06E-73 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal ALFP_3510 78fc8700d2f51e359c03091c3c600339 608 Gene3D G3DSA:3.60.20.10 2 242 2.5E-76 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal ALFP_3510 78fc8700d2f51e359c03091c3c600339 608 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 608 39.406 T 12-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 ALFP_3510 78fc8700d2f51e359c03091c3c600339 608 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 608 6.7E-251 T 12-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 ALFP_1907 52ecf2c0fbeea64283d53af9a51ee8e0 257 SUPERFAMILY SSF53639 25 234 6.28E-60 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily ALFP_1907 52ecf2c0fbeea64283d53af9a51ee8e0 257 Gene3D G3DSA:3.40.225.10 15 254 4.7E-54 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily ALFP_1907 52ecf2c0fbeea64283d53af9a51ee8e0 257 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 30 208 3.5E-38 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal ALFP_1907 52ecf2c0fbeea64283d53af9a51ee8e0 257 SMART SM01007 29 208 4.8E-44 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal ALFP_2043 ef612a6cca2288b4f3061a428c0a8bfe 87 Gene3D G3DSA:3.10.510.10 1 87 2.4E-32 T 12-10-2018 IPR023122 NE1680-like superfamily ALFP_2043 ef612a6cca2288b4f3061a428c0a8bfe 87 SUPERFAMILY SSF160766 1 86 3.4E-32 T 12-10-2018 IPR023122 NE1680-like superfamily ALFP_2043 ef612a6cca2288b4f3061a428c0a8bfe 87 Pfam PF09630 Domain of unknown function (DUF2024) 1 83 4.3E-30 T 12-10-2018 IPR018592 Protein of unknown function DUF2024 ALFP_0963 280e92a7effcf02d4901c873a190089e 300 TIGRFAM TIGR03133 malonate_beta: biotin-independent malonate decarboxylase, beta subunit 2 253 5.4E-106 T 12-10-2018 IPR017556 Biotin-independent malonate decarboxylase, beta subunit GO:0016831|GO:0044262 MetaCyc: PWY-6060 ALFP_0963 280e92a7effcf02d4901c873a190089e 300 Pfam PF01039 Carboxyl transferase domain 9 191 1.5E-14 T 12-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 ALFP_0963 280e92a7effcf02d4901c873a190089e 300 Gene3D G3DSA:3.90.226.10 2 223 1.4E-41 T 12-10-2018 ALFP_0963 280e92a7effcf02d4901c873a190089e 300 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 69 83 2.4E-5 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_0963 280e92a7effcf02d4901c873a190089e 300 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 104 122 2.4E-5 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_0963 280e92a7effcf02d4901c873a190089e 300 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 171 182 2.4E-5 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_0963 280e92a7effcf02d4901c873a190089e 300 SUPERFAMILY SSF52096 7 203 2.67E-33 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_0445 36e8333b7c06f331eacbe8ba291b69ac 260 SUPERFAMILY SSF101082 28 221 4.58E-34 T 12-10-2018 ALFP_0445 36e8333b7c06f331eacbe8ba291b69ac 260 TIGRFAM TIGR02780 TrbJ_Ti: P-type conjugative transfer protein TrbJ 7 250 1.1E-57 T 12-10-2018 IPR014147 Type IV conjugative transfer protein TrbJ ALFP_0044 d7d66ad5457ac7790ed19327813fe650 255 SMART SM00866 97 239 8.2E-4 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ALFP_0044 d7d66ad5457ac7790ed19327813fe650 255 Gene3D G3DSA:3.40.1410.10 103 247 7.5E-15 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily ALFP_0044 d7d66ad5457ac7790ed19327813fe650 255 SUPERFAMILY SSF46785 10 81 2.36E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0044 d7d66ad5457ac7790ed19327813fe650 255 SUPERFAMILY SSF64288 65 246 7.54E-20 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily ALFP_0044 d7d66ad5457ac7790ed19327813fe650 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 8.2E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0044 d7d66ad5457ac7790ed19327813fe650 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 8.2E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0044 d7d66ad5457ac7790ed19327813fe650 255 Pfam PF07702 UTRA domain 151 238 1.1E-10 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ALFP_0044 d7d66ad5457ac7790ed19327813fe650 255 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 77 8.2E-21 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0044 d7d66ad5457ac7790ed19327813fe650 255 Gene3D G3DSA:1.10.10.10 3 77 6.7E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0044 d7d66ad5457ac7790ed19327813fe650 255 SMART SM00345 18 77 2.8E-20 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1122 24333ab807525942eb3a1fbaded8b489 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 46 67 4.9E-62 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 ALFP_1122 24333ab807525942eb3a1fbaded8b489 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 30 46 4.9E-62 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 ALFP_1122 24333ab807525942eb3a1fbaded8b489 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 153 167 4.9E-62 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 ALFP_1122 24333ab807525942eb3a1fbaded8b489 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 308 334 4.9E-62 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 ALFP_1122 24333ab807525942eb3a1fbaded8b489 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 73 87 4.9E-62 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 ALFP_1122 24333ab807525942eb3a1fbaded8b489 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 176 195 4.9E-62 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 ALFP_1122 24333ab807525942eb3a1fbaded8b489 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 122 138 4.9E-62 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 ALFP_1122 24333ab807525942eb3a1fbaded8b489 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 213 232 4.9E-62 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 ALFP_1122 24333ab807525942eb3a1fbaded8b489 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 89 102 4.9E-62 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 ALFP_1122 24333ab807525942eb3a1fbaded8b489 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 263 282 4.9E-62 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 ALFP_1122 24333ab807525942eb3a1fbaded8b489 364 Pfam PF13416 Bacterial extracellular solute-binding protein 44 329 6.5E-32 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein ALFP_1122 24333ab807525942eb3a1fbaded8b489 364 PIRSF PIRSF019574 3 364 4.6E-133 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 ALFP_1122 24333ab807525942eb3a1fbaded8b489 364 SUPERFAMILY SSF53850 25 363 7.65E-93 T 12-10-2018 ALFP_1122 24333ab807525942eb3a1fbaded8b489 364 Gene3D G3DSA:3.40.190.10 27 332 3.1E-125 T 12-10-2018 ALFP_1122 24333ab807525942eb3a1fbaded8b489 364 Gene3D G3DSA:3.40.190.10 131 357 3.1E-125 T 12-10-2018 ALFP_1849 8893fabd7b4678fc0dde6e86791f5f7e 343 Gene3D G3DSA:1.20.1630.10 7 229 2.1E-5 T 12-10-2018 ALFP_1849 8893fabd7b4678fc0dde6e86791f5f7e 343 Pfam PF03916 Polysulphide reductase, NrfD 11 289 3.7E-16 T 12-10-2018 IPR005614 NrfD family ALFP_2382 8c447bccd01a52b4a56aed8ba0ffd361 344 SUPERFAMILY SSF55874 196 335 2.75E-29 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_2382 8c447bccd01a52b4a56aed8ba0ffd361 344 SUPERFAMILY SSF47384 107 184 1.96E-11 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_2382 8c447bccd01a52b4a56aed8ba0ffd361 344 SMART SM00388 119 185 2.9E-7 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_2382 8c447bccd01a52b4a56aed8ba0ffd361 344 Gene3D G3DSA:3.30.450.20 1 115 3.9E-7 T 12-10-2018 ALFP_2382 8c447bccd01a52b4a56aed8ba0ffd361 344 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 231 334 1.4E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2382 8c447bccd01a52b4a56aed8ba0ffd361 344 SMART SM00387 228 338 9.4E-24 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2382 8c447bccd01a52b4a56aed8ba0ffd361 344 Pfam PF00512 His Kinase A (phospho-acceptor) domain 121 184 4.1E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_2382 8c447bccd01a52b4a56aed8ba0ffd361 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 284 294 2.4E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2382 8c447bccd01a52b4a56aed8ba0ffd361 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 322 335 2.4E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2382 8c447bccd01a52b4a56aed8ba0ffd361 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 266 280 2.4E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2382 8c447bccd01a52b4a56aed8ba0ffd361 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 298 316 2.4E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2382 8c447bccd01a52b4a56aed8ba0ffd361 344 Gene3D G3DSA:1.10.287.130 116 185 2.1E-10 T 12-10-2018 ALFP_2382 8c447bccd01a52b4a56aed8ba0ffd361 344 Gene3D G3DSA:3.30.565.10 192 339 3.1E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_0592 6762edcab686f6e5a0e165ad0eac60ad 588 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 169 3.9E-53 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 ALFP_0592 6762edcab686f6e5a0e165ad0eac60ad 588 Gene3D G3DSA:3.40.50.1220 190 355 1.9E-46 T 12-10-2018 ALFP_0592 6762edcab686f6e5a0e165ad0eac60ad 588 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 390 549 1.3E-33 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 ALFP_0592 6762edcab686f6e5a0e165ad0eac60ad 588 SUPERFAMILY SSF52467 158 345 2.7E-44 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily ALFP_0592 6762edcab686f6e5a0e165ad0eac60ad 588 Gene3D G3DSA:3.40.50.970 1 168 3.7E-67 T 12-10-2018 ALFP_0592 6762edcab686f6e5a0e165ad0eac60ad 588 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 191 324 7.2E-33 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 ALFP_0592 6762edcab686f6e5a0e165ad0eac60ad 588 SUPERFAMILY SSF52518 366 567 3.5E-50 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_0592 6762edcab686f6e5a0e165ad0eac60ad 588 Gene3D G3DSA:3.40.50.970 356 579 7.2E-64 T 12-10-2018 ALFP_0592 6762edcab686f6e5a0e165ad0eac60ad 588 TIGRFAM TIGR01504 glyox_carbo_lig: glyoxylate carboligase 1 587 0.0 T 12-10-2018 IPR006397 Glyoxylate carboligase GO:0009028|GO:0009436 KEGG: 00630+4.1.1.47 ALFP_0592 6762edcab686f6e5a0e165ad0eac60ad 588 SUPERFAMILY SSF52518 4 182 2.84E-49 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_0312 f81cb0833775d8e5d6b46b426faad872 189 Pfam PF04657 Putative inner membrane exporter, YdcZ 9 145 4.8E-39 T 12-10-2018 IPR006750 Putative inner membrane exporter, YdcZ ALFP_1836 857d2357b2841aa260b7aabf6e2bdcca 329 SUPERFAMILY SSF53850 88 293 1.55E-8 T 12-10-2018 ALFP_1836 857d2357b2841aa260b7aabf6e2bdcca 329 PIRSF PIRSF017082 1 328 2.6E-61 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_1836 857d2357b2841aa260b7aabf6e2bdcca 329 Gene3D G3DSA:3.40.190.10 130 255 8.6E-87 T 12-10-2018 ALFP_1836 857d2357b2841aa260b7aabf6e2bdcca 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 322 1.3E-57 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_1836 857d2357b2841aa260b7aabf6e2bdcca 329 Gene3D G3DSA:3.40.190.150 32 319 8.6E-87 T 12-10-2018 ALFP_2510 2254c5d73925b27054e3c9658661bb8c 497 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 183 489 1.1E-124 T 12-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 ALFP_2510 2254c5d73925b27054e3c9658661bb8c 497 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 4 497 36.631 T 12-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 ALFP_2510 2254c5d73925b27054e3c9658661bb8c 497 Gene3D G3DSA:3.40.220.10 1 178 4.6E-32 T 12-10-2018 ALFP_2510 2254c5d73925b27054e3c9658661bb8c 497 SUPERFAMILY SSF52949 1 182 8.83E-31 T 12-10-2018 ALFP_2510 2254c5d73925b27054e3c9658661bb8c 497 Gene3D G3DSA:3.40.630.10 179 497 1.1E-136 T 12-10-2018 ALFP_2510 2254c5d73925b27054e3c9658661bb8c 497 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 21 145 1.2E-20 T 12-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 ALFP_2510 2254c5d73925b27054e3c9658661bb8c 497 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 349 356 - T 12-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 ALFP_2510 2254c5d73925b27054e3c9658661bb8c 497 PRINTS PR00481 Cytosol aminopeptidase signature 264 281 1.6E-56 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 ALFP_2510 2254c5d73925b27054e3c9658661bb8c 497 PRINTS PR00481 Cytosol aminopeptidase signature 373 388 1.6E-56 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 ALFP_2510 2254c5d73925b27054e3c9658661bb8c 497 PRINTS PR00481 Cytosol aminopeptidase signature 345 365 1.6E-56 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 ALFP_2510 2254c5d73925b27054e3c9658661bb8c 497 PRINTS PR00481 Cytosol aminopeptidase signature 286 307 1.6E-56 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 ALFP_2510 2254c5d73925b27054e3c9658661bb8c 497 PRINTS PR00481 Cytosol aminopeptidase signature 323 344 1.6E-56 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 ALFP_2510 2254c5d73925b27054e3c9658661bb8c 497 SUPERFAMILY SSF53187 178 494 5.49E-123 T 12-10-2018 ALFP_3064 24838a8e85726a686f86c75baf70a6db 382 SUPERFAMILY SSF53597 151 362 1.64E-55 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 ALFP_3064 24838a8e85726a686f86c75baf70a6db 382 SUPERFAMILY SSF53927 6 151 1.95E-45 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 ALFP_3064 24838a8e85726a686f86c75baf70a6db 382 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 8 105 2.0E-20 T 12-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain ALFP_3064 24838a8e85726a686f86c75baf70a6db 382 Pfam PF01872 RibD C-terminal domain 153 333 1.6E-40 T 12-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 ALFP_3064 24838a8e85726a686f86c75baf70a6db 382 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 53 94 - T 12-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 ALFP_3064 24838a8e85726a686f86c75baf70a6db 382 Gene3D G3DSA:3.40.430.10 148 364 2.2E-59 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 ALFP_3064 24838a8e85726a686f86c75baf70a6db 382 Gene3D G3DSA:3.40.140.10 2 147 3.5E-45 T 12-10-2018 ALFP_3064 24838a8e85726a686f86c75baf70a6db 382 PIRSF PIRSF006769 1 364 2.9E-108 T 12-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 ALFP_3064 24838a8e85726a686f86c75baf70a6db 382 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 10 356 1.0E-101 T 12-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 ALFP_3064 24838a8e85726a686f86c75baf70a6db 382 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 152 360 6.1E-46 T 12-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 ALFP_0793 70588e6d89102e3b641ef84af8be7401 357 SUPERFAMILY SSF53756 5 354 3.87E-117 T 12-10-2018 ALFP_0793 70588e6d89102e3b641ef84af8be7401 357 Gene3D G3DSA:3.40.50.2000 7 343 4.2E-108 T 12-10-2018 ALFP_0793 70588e6d89102e3b641ef84af8be7401 357 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 183 341 1.4E-37 T 12-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 ALFP_0793 70588e6d89102e3b641ef84af8be7401 357 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 5 348 3.8E-99 T 12-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_0793 70588e6d89102e3b641ef84af8be7401 357 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 6 353 33.564 T 12-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_0793 70588e6d89102e3b641ef84af8be7401 357 Gene3D G3DSA:3.40.50.2000 160 337 4.2E-108 T 12-10-2018 ALFP_0793 70588e6d89102e3b641ef84af8be7401 357 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 6 143 1.3E-36 T 12-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_1502 77e67e1c72dc58335939ff0c1076ab32 822 Pfam PF13567 Domain of unknown function (DUF4131) 26 187 1.2E-15 T 12-10-2018 IPR025405 Domain of unknown function DUF4131 ALFP_1502 77e67e1c72dc58335939ff0c1076ab32 822 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 252 441 1.1E-14 T 12-10-2018 IPR004477 ComEC/Rec2-related protein ALFP_1502 77e67e1c72dc58335939ff0c1076ab32 822 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 146 792 1.9E-86 T 12-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 ALFP_1502 77e67e1c72dc58335939ff0c1076ab32 822 Pfam PF03772 Competence protein 230 514 1.3E-46 T 12-10-2018 IPR004477 ComEC/Rec2-related protein ALFP_1502 77e67e1c72dc58335939ff0c1076ab32 822 Gene3D G3DSA:3.60.15.10 545 802 8.5E-47 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_1502 77e67e1c72dc58335939ff0c1076ab32 822 SMART SM00849 552 738 4.5E-7 T 12-10-2018 IPR001279 Metallo-beta-lactamase ALFP_1502 77e67e1c72dc58335939ff0c1076ab32 822 Pfam PF00753 Metallo-beta-lactamase superfamily 551 645 6.8E-7 T 12-10-2018 IPR001279 Metallo-beta-lactamase ALFP_1502 77e67e1c72dc58335939ff0c1076ab32 822 SUPERFAMILY SSF56281 540 816 2.1E-38 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_0089 98d3bd61abd37e2cda466b1ba342ceaf 414 Gene3D G3DSA:3.30.9.40 65 272 2.0E-128 T 12-10-2018 ALFP_0089 98d3bd61abd37e2cda466b1ba342ceaf 414 Gene3D G3DSA:3.50.50.60 4 323 2.0E-128 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0089 98d3bd61abd37e2cda466b1ba342ceaf 414 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 286 301 3.1E-5 T 12-10-2018 ALFP_0089 98d3bd61abd37e2cda466b1ba342ceaf 414 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 3.1E-5 T 12-10-2018 ALFP_0089 98d3bd61abd37e2cda466b1ba342ceaf 414 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 301 317 3.1E-5 T 12-10-2018 ALFP_0089 98d3bd61abd37e2cda466b1ba342ceaf 414 SUPERFAMILY SSF51905 2 362 1.45E-22 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2943 854e59c7fc0e61a9cb4e561b34863557 395 SUPERFAMILY SSF47741 85 168 1.02E-23 T 12-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily ALFP_2943 854e59c7fc0e61a9cb4e561b34863557 395 SUPERFAMILY SSF54292 2 79 1.97E-23 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_2943 854e59c7fc0e61a9cb4e561b34863557 395 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ALFP_2943 854e59c7fc0e61a9cb4e561b34863557 395 Gene3D G3DSA:3.30.530.20 215 368 1.0E-32 T 12-10-2018 IPR023393 START-like domain superfamily ALFP_2943 854e59c7fc0e61a9cb4e561b34863557 395 Gene3D G3DSA:3.10.20.30 1 76 1.0E-28 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_2943 854e59c7fc0e61a9cb4e561b34863557 395 Pfam PF01799 [2Fe-2S] binding domain 74 146 1.3E-19 T 12-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 ALFP_2943 854e59c7fc0e61a9cb4e561b34863557 395 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 59 1.3E-5 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_2943 854e59c7fc0e61a9cb4e561b34863557 395 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 220 358 1.3E-14 T 12-10-2018 IPR010419 Carbon monoxide dehydrogenase subunit G ALFP_2943 854e59c7fc0e61a9cb4e561b34863557 395 SUPERFAMILY SSF55961 223 361 4.67E-20 T 12-10-2018 ALFP_2943 854e59c7fc0e61a9cb4e561b34863557 395 Gene3D G3DSA:1.10.150.120 77 190 5.0E-23 T 12-10-2018 ALFP_0989 3676e2096d6100cf84910976baa77802 197 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 13 42 1.1E-5 T 12-10-2018 IPR001451 Hexapeptide repeat ALFP_0989 3676e2096d6100cf84910976baa77802 197 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 89 123 2.9E-8 T 12-10-2018 IPR001451 Hexapeptide repeat ALFP_0989 3676e2096d6100cf84910976baa77802 197 SUPERFAMILY SSF51161 4 166 9.84E-44 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily ALFP_0989 3676e2096d6100cf84910976baa77802 197 Gene3D G3DSA:2.160.10.10 3 180 3.1E-50 T 12-10-2018 ALFP_2524 a9c42cbc229d28dcaad5ec736a60df17 200 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 186 5.9E-33 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 ALFP_2524 a9c42cbc229d28dcaad5ec736a60df17 200 SUPERFAMILY SSF88659 124 187 1.55E-17 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like ALFP_2524 a9c42cbc229d28dcaad5ec736a60df17 200 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 47 78 - T 12-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ALFP_2524 a9c42cbc229d28dcaad5ec736a60df17 200 Gene3D G3DSA:1.10.10.10 128 189 4.9E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2524 a9c42cbc229d28dcaad5ec736a60df17 200 Pfam PF08281 Sigma-70, region 4 134 182 3.9E-17 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ALFP_2524 a9c42cbc229d28dcaad5ec736a60df17 200 Pfam PF04542 Sigma-70 region 2 25 91 2.6E-18 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_2524 a9c42cbc229d28dcaad5ec736a60df17 200 SUPERFAMILY SSF88946 2 104 2.35E-32 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_2524 a9c42cbc229d28dcaad5ec736a60df17 200 Gene3D G3DSA:1.10.1740.10 1 122 1.0E-39 T 12-10-2018 ALFP_2524 a9c42cbc229d28dcaad5ec736a60df17 200 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 1 191 9.3E-93 T 12-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ALFP_3038 7e2c730ef7a0a71044dc4e49f4b0d9af 823 SUPERFAMILY SSF52540 377 750 1.51E-30 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3038 7e2c730ef7a0a71044dc4e49f4b0d9af 823 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 173 377 2.7E-24 T 12-10-2018 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 ALFP_3475 f0a5ca33c3192382bc3bb5c6784b89ba 290 TIGRFAM TIGR03036 trp_2_3_diox: tryptophan 2,3-dioxygenase 27 290 6.4E-132 T 12-10-2018 IPR017485 Tryptophan 2,3-dioxygenase, bacterial GO:0004833|GO:0019441 KEGG: 00380+1.13.11.11 ALFP_3475 f0a5ca33c3192382bc3bb5c6784b89ba 290 Gene3D G3DSA:1.20.58.480 31 290 3.0E-97 T 12-10-2018 ALFP_3475 f0a5ca33c3192382bc3bb5c6784b89ba 290 Pfam PF03301 Tryptophan 2,3-dioxygenase 21 290 3.8E-70 T 12-10-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 ALFP_3475 f0a5ca33c3192382bc3bb5c6784b89ba 290 Hamap MF_01972 Tryptophan 2,3-dioxygenase [kynA]. 27 290 41.285 T 12-10-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 ALFP_3475 f0a5ca33c3192382bc3bb5c6784b89ba 290 SUPERFAMILY SSF140959 33 290 1.05E-103 T 12-10-2018 IPR037217 Tryptophan/Indoleamine 2,3-dioxygenase-like GO:0019441|GO:0020037|GO:0046872 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 ALFP_1896 1777845ea43bf2b40636383a5874878c 204 Gene3D G3DSA:3.40.30.10 2 197 4.2E-64 T 12-10-2018 ALFP_1896 1777845ea43bf2b40636383a5874878c 204 Pfam PF14497 Glutathione S-transferase, C-terminal domain 112 196 8.2E-6 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal ALFP_1896 1777845ea43bf2b40636383a5874878c 204 SUPERFAMILY SSF52833 1 80 1.23E-20 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_1896 1777845ea43bf2b40636383a5874878c 204 Pfam PF02798 Glutathione S-transferase, N-terminal domain 1 70 4.5E-14 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 ALFP_1896 1777845ea43bf2b40636383a5874878c 204 Gene3D G3DSA:1.20.1050.10 80 189 4.2E-64 T 12-10-2018 ALFP_1896 1777845ea43bf2b40636383a5874878c 204 SUPERFAMILY SSF47616 74 197 1.81E-22 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily ALFP_0256 15e5a4118177eb068376fbc094de64f4 263 SUPERFAMILY SSF52096 7 262 8.58E-82 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_0256 15e5a4118177eb068376fbc094de64f4 263 Gene3D G3DSA:1.10.12.10 207 263 2.7E-24 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal ALFP_0256 15e5a4118177eb068376fbc094de64f4 263 Gene3D G3DSA:3.90.226.10 9 205 9.3E-67 T 12-10-2018 ALFP_0256 15e5a4118177eb068376fbc094de64f4 263 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 262 1.7E-55 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 ALFP_1302 777548f32bf80f78fb149873f66b7f3b 69 SMART SM00357 5 69 5.2E-22 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 ALFP_1302 777548f32bf80f78fb149873f66b7f3b 69 Gene3D G3DSA:2.40.50.140 5 68 1.5E-24 T 12-10-2018 ALFP_1302 777548f32bf80f78fb149873f66b7f3b 69 PIRSF PIRSF002599 1 69 6.2E-20 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 ALFP_1302 777548f32bf80f78fb149873f66b7f3b 69 PRINTS PR00050 Cold shock protein signature 27 36 1.2E-12 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ALFP_1302 777548f32bf80f78fb149873f66b7f3b 69 PRINTS PR00050 Cold shock protein signature 6 21 1.2E-12 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ALFP_1302 777548f32bf80f78fb149873f66b7f3b 69 PRINTS PR00050 Cold shock protein signature 42 60 1.2E-12 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ALFP_1302 777548f32bf80f78fb149873f66b7f3b 69 Pfam PF00313 'Cold-shock' DNA-binding domain 6 67 1.8E-25 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ALFP_1302 777548f32bf80f78fb149873f66b7f3b 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 12-10-2018 IPR019844 Cold-shock conserved site ALFP_1302 777548f32bf80f78fb149873f66b7f3b 69 SUPERFAMILY SSF50249 4 68 1.56E-22 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2897 1008504f3ea572585ba8cbda5e73a360 275 Gene3D G3DSA:3.30.450.40 94 262 9.1E-35 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_2897 1008504f3ea572585ba8cbda5e73a360 275 SUPERFAMILY SSF55781 74 267 1.7E-37 T 12-10-2018 ALFP_2897 1008504f3ea572585ba8cbda5e73a360 275 SUPERFAMILY SSF46785 16 89 2.24E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2897 1008504f3ea572585ba8cbda5e73a360 275 Pfam PF09339 IclR helix-turn-helix domain 18 68 7.7E-9 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_2897 1008504f3ea572585ba8cbda5e73a360 275 Pfam PF01614 Bacterial transcriptional regulator 135 262 1.1E-17 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal ALFP_2897 1008504f3ea572585ba8cbda5e73a360 275 Gene3D G3DSA:1.10.10.10 10 84 3.5E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2897 1008504f3ea572585ba8cbda5e73a360 275 SMART SM00346 16 106 3.6E-14 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_2713 0320f02ee9f11ae0b315b4e2238e24a5 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 8.2E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2713 0320f02ee9f11ae0b315b4e2238e24a5 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 8.2E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2713 0320f02ee9f11ae0b315b4e2238e24a5 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 8.2E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2713 0320f02ee9f11ae0b315b4e2238e24a5 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 8.2E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2713 0320f02ee9f11ae0b315b4e2238e24a5 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 8.2E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2713 0320f02ee9f11ae0b315b4e2238e24a5 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 8.2E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2713 0320f02ee9f11ae0b315b4e2238e24a5 250 Gene3D G3DSA:3.40.50.720 1 249 5.8E-79 T 12-10-2018 ALFP_2713 0320f02ee9f11ae0b315b4e2238e24a5 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_2713 0320f02ee9f11ae0b315b4e2238e24a5 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.1E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2713 0320f02ee9f11ae0b315b4e2238e24a5 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.1E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2713 0320f02ee9f11ae0b315b4e2238e24a5 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.1E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2713 0320f02ee9f11ae0b315b4e2238e24a5 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 248 3.1E-65 T 12-10-2018 ALFP_2713 0320f02ee9f11ae0b315b4e2238e24a5 250 SUPERFAMILY SSF51735 1 249 4.86E-78 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2523 54525fd79b054c8663241339f851d5e2 165 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 21 88 1.4E-9 T 12-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 ALFP_2523 54525fd79b054c8663241339f851d5e2 165 SUPERFAMILY SSF89069 18 79 9.81E-11 T 12-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 ALFP_2523 54525fd79b054c8663241339f851d5e2 165 Gene3D G3DSA:1.10.10.880 16 79 2.6E-7 T 12-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 ALFP_3644 0de4bae097f47fc5021e62c928f5351a 172 Gene3D G3DSA:3.10.129.10 21 162 2.5E-25 T 12-10-2018 ALFP_3644 0de4bae097f47fc5021e62c928f5351a 172 SUPERFAMILY SSF54637 15 162 1.98E-18 T 12-10-2018 IPR029069 HotDog domain superfamily ALFP_3644 0de4bae097f47fc5021e62c928f5351a 172 Pfam PF14539 Domain of unknown function (DUF4442) 27 159 1.9E-16 T 12-10-2018 IPR027961 Protein of unknown function DUF4442 ALFP_1139 9e174f4b76054c1725c89be495620ef0 238 Pfam PF01522 Polysaccharide deacetylase 51 186 1.8E-27 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 ALFP_1139 9e174f4b76054c1725c89be495620ef0 238 SUPERFAMILY SSF88713 15 209 3.61E-39 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 ALFP_1139 9e174f4b76054c1725c89be495620ef0 238 Gene3D G3DSA:3.20.20.370 1 226 6.7E-58 T 12-10-2018 ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 SUPERFAMILY SSF141868 670 919 2.35E-83 T 12-10-2018 IPR035919 EAL domain superfamily ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 SUPERFAMILY SSF55785 374 480 6.11E-25 T 12-10-2018 IPR035965 PAS domain superfamily ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 Gene3D G3DSA:3.30.450.20 367 491 1.4E-28 T 12-10-2018 ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 SMART SM00267 482 654 8.4E-66 T 12-10-2018 IPR000160 GGDEF domain ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 Pfam PF00563 EAL domain 670 906 8.4E-68 T 12-10-2018 IPR001633 EAL domain ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 SMART SM00086 440 482 67.0 T 12-10-2018 IPR001610 PAC motif ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 SMART SM00086 320 360 0.078 T 12-10-2018 IPR001610 PAC motif ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 491 651 1.5E-45 T 12-10-2018 IPR000160 GGDEF domain ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 SMART SM00052 664 911 6.9E-102 T 12-10-2018 IPR001633 EAL domain ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 SUPERFAMILY SSF55073 498 654 4.55E-51 T 12-10-2018 IPR029787 Nucleotide cyclase ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 Gene3D G3DSA:3.20.20.450 667 923 5.4E-91 T 12-10-2018 IPR035919 EAL domain superfamily ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 Gene3D G3DSA:3.30.70.270 492 666 5.4E-62 T 12-10-2018 ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 Pfam PF13426 PAS domain 264 359 3.7E-6 T 12-10-2018 IPR000014 PAS domain ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 Pfam PF13426 PAS domain 380 480 1.3E-14 T 12-10-2018 IPR000014 PAS domain ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 374 488 4.8E-17 T 12-10-2018 IPR000014 PAS domain ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 253 364 2.4E-13 T 12-10-2018 IPR000014 PAS domain ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 SUPERFAMILY SSF55785 262 364 6.63E-14 T 12-10-2018 IPR035965 PAS domain superfamily ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 Pfam PF00990 Diguanylate cyclase, GGDEF domain 493 650 2.3E-52 T 12-10-2018 IPR000160 GGDEF domain ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 SMART SM00091 244 314 0.48 T 12-10-2018 IPR000014 PAS domain ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 SMART SM00091 368 434 5.8E-6 T 12-10-2018 IPR000014 PAS domain ALFP_0699 e2c77c81928679f67e89969d25e0d658 940 Gene3D G3DSA:3.30.450.20 250 362 1.4E-13 T 12-10-2018 ALFP_1226 0db223acd7ff81d2d70c5d7b0faf10cb 480 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 34 474 2.2E-195 T 12-10-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 ALFP_1226 0db223acd7ff81d2d70c5d7b0faf10cb 480 SMART SM00382 193 380 9.9E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1226 0db223acd7ff81d2d70c5d7b0faf10cb 480 Gene3D G3DSA:3.40.50.12240 25 479 3.5E-155 T 12-10-2018 ALFP_1226 0db223acd7ff81d2d70c5d7b0faf10cb 480 SUPERFAMILY SSF52540 128 402 7.48E-95 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1226 0db223acd7ff81d2d70c5d7b0faf10cb 480 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 19 476 1.2E-176 T 12-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 ALFP_1226 0db223acd7ff81d2d70c5d7b0faf10cb 480 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 181 396 6.7E-73 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 ALFP_1226 0db223acd7ff81d2d70c5d7b0faf10cb 480 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 387 396 - T 12-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 ALFP_1323 afd6622b06e8e1305b0bfedb27ec4ffe 349 Pfam PF13533 Biotin-lipoyl like 51 99 4.8E-11 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain ALFP_1323 afd6622b06e8e1305b0bfedb27ec4ffe 349 Gene3D G3DSA:2.40.30.170 230 347 1.9E-28 T 12-10-2018 ALFP_1323 afd6622b06e8e1305b0bfedb27ec4ffe 349 SUPERFAMILY SSF111369 125 289 1.57E-8 T 12-10-2018 ALFP_1323 afd6622b06e8e1305b0bfedb27ec4ffe 349 Pfam PF13437 HlyD family secretion protein 214 296 1.2E-9 T 12-10-2018 ALFP_1323 afd6622b06e8e1305b0bfedb27ec4ffe 349 Gene3D G3DSA:1.10.287.470 85 186 4.0E-15 T 12-10-2018 ALFP_1323 afd6622b06e8e1305b0bfedb27ec4ffe 349 Gene3D G3DSA:2.40.50.100 50 188 4.0E-15 T 12-10-2018 ALFP_1323 afd6622b06e8e1305b0bfedb27ec4ffe 349 SUPERFAMILY SSF111369 50 115 5.62E-10 T 12-10-2018 ALFP_3472 345ff5c62340e7093f7ce15e41db163e 230 SUPERFAMILY SSF46785 21 90 1.47E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3472 345ff5c62340e7093f7ce15e41db163e 230 Gene3D G3DSA:1.20.120.530 91 222 6.5E-19 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_3472 345ff5c62340e7093f7ce15e41db163e 230 Pfam PF07729 FCD domain 96 217 1.0E-17 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_3472 345ff5c62340e7093f7ce15e41db163e 230 SUPERFAMILY SSF48008 95 226 1.78E-16 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_3472 345ff5c62340e7093f7ce15e41db163e 230 SMART SM00895 96 221 1.9E-10 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_3472 345ff5c62340e7093f7ce15e41db163e 230 Pfam PF00392 Bacterial regulatory proteins, gntR family 26 86 4.0E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_3472 345ff5c62340e7093f7ce15e41db163e 230 SMART SM00345 28 86 4.6E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_3472 345ff5c62340e7093f7ce15e41db163e 230 Gene3D G3DSA:1.10.10.10 21 87 3.5E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2289 b93f45b3f079db4bbdc1e96a8241c799 554 Gene3D G3DSA:3.40.605.10 84 307 1.5E-25 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_2289 b93f45b3f079db4bbdc1e96a8241c799 554 Pfam PF00171 Aldehyde dehydrogenase family 89 492 5.7E-37 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_2289 b93f45b3f079db4bbdc1e96a8241c799 554 Gene3D G3DSA:3.40.309.10 312 519 1.1E-25 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_2289 b93f45b3f079db4bbdc1e96a8241c799 554 SUPERFAMILY SSF53720 89 522 3.8E-58 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_2289 b93f45b3f079db4bbdc1e96a8241c799 554 TIGRFAM TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN 2 553 3.8E-274 T 12-10-2018 IPR011975 Phenylacetic acid degradation protein PaaN2 ALFP_1102 1112071e647ca3e9d26bb5a9782b729f 90 Gene3D G3DSA:4.10.640.10 4 90 1.9E-25 T 12-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1102 1112071e647ca3e9d26bb5a9782b729f 90 SUPERFAMILY SSF46911 15 89 3.14E-27 T 12-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1102 1112071e647ca3e9d26bb5a9782b729f 90 TIGRFAM TIGR00165 S18: ribosomal protein bS18 20 87 1.1E-32 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1102 1112071e647ca3e9d26bb5a9782b729f 90 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 36 87 4.0E-21 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1102 1112071e647ca3e9d26bb5a9782b729f 90 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 17 88 20.152 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1102 1112071e647ca3e9d26bb5a9782b729f 90 PRINTS PR00974 Ribosomal protein S18 family signature 53 60 1.8E-15 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1102 1112071e647ca3e9d26bb5a9782b729f 90 PRINTS PR00974 Ribosomal protein S18 family signature 75 85 1.8E-15 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1102 1112071e647ca3e9d26bb5a9782b729f 90 PRINTS PR00974 Ribosomal protein S18 family signature 43 53 1.8E-15 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1102 1112071e647ca3e9d26bb5a9782b729f 90 PRINTS PR00974 Ribosomal protein S18 family signature 61 75 1.8E-15 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1102 1112071e647ca3e9d26bb5a9782b729f 90 Pfam PF01084 Ribosomal protein S18 34 83 1.1E-22 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1102 1112071e647ca3e9d26bb5a9782b729f 90 ProSitePatterns PS00057 Ribosomal protein S18 signature. 36 59 - T 12-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1103 9f50852a37590eef254aa99308d28888 151 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 12-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1103 9f50852a37590eef254aa99308d28888 151 SUPERFAMILY SSF55658 1 56 9.24E-18 T 12-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal ALFP_1103 9f50852a37590eef254aa99308d28888 151 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 147 4.1E-45 T 12-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_1103 9f50852a37590eef254aa99308d28888 151 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 149 25.68 T 12-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_1103 9f50852a37590eef254aa99308d28888 151 SUPERFAMILY SSF55653 60 148 5.1E-24 T 12-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily ALFP_1103 9f50852a37590eef254aa99308d28888 151 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 147 2.4E-24 T 12-10-2018 IPR020069 Ribosomal protein L9, C-terminal ALFP_1103 9f50852a37590eef254aa99308d28888 151 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 2.9E-21 T 12-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1103 9f50852a37590eef254aa99308d28888 151 Gene3D G3DSA:3.40.5.10 1 65 2.9E-22 T 12-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1103 9f50852a37590eef254aa99308d28888 151 Gene3D G3DSA:3.10.430.100 66 148 8.6E-25 T 12-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily ALFP_2911 bdf7d253c1c28e753f5b861332d3b0dc 190 Gene3D G3DSA:3.40.50.850 3 189 7.4E-59 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_2911 bdf7d253c1c28e753f5b861332d3b0dc 190 Pfam PF00857 Isochorismatase family 8 183 5.1E-44 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 ALFP_2911 bdf7d253c1c28e753f5b861332d3b0dc 190 SUPERFAMILY SSF52499 8 186 6.93E-54 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_3463 526c04e269f96933ae786081a6c10b89 314 Gene3D G3DSA:3.40.50.720 16 306 3.0E-106 T 12-10-2018 ALFP_3463 526c04e269f96933ae786081a6c10b89 314 SUPERFAMILY SSF52283 1 133 8.08E-31 T 12-10-2018 ALFP_3463 526c04e269f96933ae786081a6c10b89 314 Gene3D G3DSA:3.40.50.720 100 284 3.0E-106 T 12-10-2018 ALFP_3463 526c04e269f96933ae786081a6c10b89 314 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 281 9.4E-49 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 ALFP_3463 526c04e269f96933ae786081a6c10b89 314 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 39 312 2.1E-22 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 ALFP_3463 526c04e269f96933ae786081a6c10b89 314 SUPERFAMILY SSF51735 100 282 3.22E-50 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3062 1683518ea9537cbcefdd0d570612af9d 262 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 154 168 6.3E-7 T 12-10-2018 ALFP_3062 1683518ea9537cbcefdd0d570612af9d 262 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 119 135 6.3E-7 T 12-10-2018 ALFP_3062 1683518ea9537cbcefdd0d570612af9d 262 SUPERFAMILY SSF53335 37 179 2.49E-11 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_3062 1683518ea9537cbcefdd0d570612af9d 262 Pfam PF02384 N-6 DNA Methylase 116 175 1.4E-6 T 12-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 ALFP_3062 1683518ea9537cbcefdd0d570612af9d 262 Gene3D G3DSA:3.40.50.150 101 197 1.0E-8 T 12-10-2018 ALFP_2272 0f2a4d55abfb3a044457095a4644d143 305 Gene3D G3DSA:1.10.760.10 186 272 1.4E-68 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2272 0f2a4d55abfb3a044457095a4644d143 305 SUPERFAMILY SSF46626 60 210 1.22E-31 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2272 0f2a4d55abfb3a044457095a4644d143 305 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 41 88 1.5E-21 T 12-10-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal ALFP_2272 0f2a4d55abfb3a044457095a4644d143 305 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 133 204 7.1E-13 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2272 0f2a4d55abfb3a044457095a4644d143 305 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 219 292 1.2E-12 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2272 0f2a4d55abfb3a044457095a4644d143 305 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 38 297 1.8E-76 T 12-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III ALFP_2272 0f2a4d55abfb3a044457095a4644d143 305 PIRSF PIRSF000006 5 299 2.7E-100 T 12-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III ALFP_2272 0f2a4d55abfb3a044457095a4644d143 305 SUPERFAMILY SSF46626 214 298 2.33E-23 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2272 0f2a4d55abfb3a044457095a4644d143 305 Gene3D G3DSA:1.20.58.1490 5 98 1.8E-28 T 12-10-2018 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily ALFP_2272 0f2a4d55abfb3a044457095a4644d143 305 Gene3D G3DSA:1.10.760.10 108 295 1.4E-68 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1511 13a3fe3a6b6216771c1c397c74a3251f 296 Gene3D G3DSA:3.40.50.1820 58 296 8.6E-44 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1511 13a3fe3a6b6216771c1c397c74a3251f 296 SUPERFAMILY SSF53474 58 293 2.41E-32 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1511 13a3fe3a6b6216771c1c397c74a3251f 296 Pfam PF12697 Alpha/beta hydrolase family 63 289 5.4E-16 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_3592 d31d09a3f65a6f0299534b0f047c3074 172 SUPERFAMILY SSF50249 3 172 4.8E-62 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_3592 d31d09a3f65a6f0299534b0f047c3074 172 PIRSF PIRSF002070 130 172 67.0 T 12-10-2018 ALFP_3592 d31d09a3f65a6f0299534b0f047c3074 172 PIRSF PIRSF002070 1 113 2.1E-35 T 12-10-2018 ALFP_3592 d31d09a3f65a6f0299534b0f047c3074 172 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 172 5.2E-56 T 12-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 ALFP_3592 d31d09a3f65a6f0299534b0f047c3074 172 Hamap MF_00984 Single-stranded DNA-binding protein. 4 112 37.853 T 12-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 ALFP_3592 d31d09a3f65a6f0299534b0f047c3074 172 Gene3D G3DSA:2.40.50.140 1 118 2.3E-47 T 12-10-2018 ALFP_3592 d31d09a3f65a6f0299534b0f047c3074 172 Pfam PF00436 Single-strand binding protein family 4 108 5.8E-42 T 12-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 ALFP_1150 d86d7368f22bb2c2bb9627b92827bbca 526 Gene3D G3DSA:3.50.50.60 188 335 3.8E-15 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1150 d86d7368f22bb2c2bb9627b92827bbca 526 Gene3D G3DSA:3.50.50.60 6 133 1.5E-13 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1150 d86d7368f22bb2c2bb9627b92827bbca 526 SUPERFAMILY SSF51905 8 524 7.69E-42 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1150 d86d7368f22bb2c2bb9627b92827bbca 526 Pfam PF01593 Flavin containing amine oxidoreductase 18 291 4.0E-18 T 12-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 ALFP_2988 67f672cfeefe256a8a95006684671626 110 Pfam PF13767 Domain of unknown function (DUF4168) 29 105 2.4E-16 T 12-10-2018 IPR025433 Domain of unknown function DUF4168 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 12 1062 0.0 T 12-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 SUPERFAMILY SSF82714 738 824 1.7E-17 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 Gene3D G3DSA:3.30.70.1320 144 344 0.0 T 12-10-2018 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 Gene3D G3DSA:3.30.70.1430 49 833 0.0 T 12-10-2018 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 SUPERFAMILY SSF82866 308 508 1.44E-52 T 12-10-2018 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 Gene3D G3DSA:3.30.2090.10 190 287 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 PRINTS PR00702 Acriflavin resistance protein family signature 403 427 6.2E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 PRINTS PR00702 Acriflavin resistance protein family signature 19 43 6.2E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 PRINTS PR00702 Acriflavin resistance protein family signature 456 479 6.2E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 PRINTS PR00702 Acriflavin resistance protein family signature 640 654 6.2E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 PRINTS PR00702 Acriflavin resistance protein family signature 348 371 6.2E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 PRINTS PR00702 Acriflavin resistance protein family signature 571 588 6.2E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 PRINTS PR00702 Acriflavin resistance protein family signature 47 65 6.2E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 PRINTS PR00702 Acriflavin resistance protein family signature 481 504 6.2E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 PRINTS PR00702 Acriflavin resistance protein family signature 375 396 6.2E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 SUPERFAMILY SSF82693 50 143 2.27E-27 T 12-10-2018 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 Gene3D G3DSA:3.30.2090.10 737 825 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 Gene3D G3DSA:3.30.70.1430 586 684 0.0 T 12-10-2018 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 Gene3D G3DSA:3.30.70.1440 685 883 0.0 T 12-10-2018 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 SUPERFAMILY SSF82714 194 283 5.49E-20 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 SUPERFAMILY SSF82693 147 342 1.44E-26 T 12-10-2018 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 Gene3D G3DSA:1.20.1640.10 532 1040 0.0 T 12-10-2018 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 Pfam PF00873 AcrB/AcrD/AcrF family 12 1043 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 SUPERFAMILY SSF82693 584 687 1.36E-24 T 12-10-2018 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 Gene3D G3DSA:1.20.1640.10 19 531 0.0 T 12-10-2018 ALFP_1268 a8132a1970635a6f67363c2a3b1a73fe 1064 SUPERFAMILY SSF82866 823 1045 1.06E-43 T 12-10-2018 ALFP_1485 074d5923a3e57bf1575ae0fd08e38961 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 12-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 ALFP_1485 074d5923a3e57bf1575ae0fd08e38961 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 1.2E-20 T 12-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 ALFP_1485 074d5923a3e57bf1575ae0fd08e38961 107 Gene3D G3DSA:2.60.300.12 2 107 1.1E-35 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 ALFP_1485 074d5923a3e57bf1575ae0fd08e38961 107 SUPERFAMILY SSF89360 1 96 3.01E-30 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 ALFP_1485 074d5923a3e57bf1575ae0fd08e38961 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 1.5E-33 T 12-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 ALFP_0553 9e6cb45094b8555e4591b61b72fd90fb 315 SUPERFAMILY SSF46689 263 308 1.39E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0553 9e6cb45094b8555e4591b61b72fd90fb 315 Gene3D G3DSA:1.10.10.60 205 312 6.6E-27 T 12-10-2018 ALFP_0553 9e6cb45094b8555e4591b61b72fd90fb 315 Pfam PF14525 AraC-binding-like domain 16 188 2.0E-18 T 12-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like ALFP_0553 9e6cb45094b8555e4591b61b72fd90fb 315 SMART SM00342 227 310 1.3E-24 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0553 9e6cb45094b8555e4591b61b72fd90fb 315 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 279 294 4.8E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_0553 9e6cb45094b8555e4591b61b72fd90fb 315 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 294 310 4.8E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_0553 9e6cb45094b8555e4591b61b72fd90fb 315 SUPERFAMILY SSF46689 209 259 9.33E-6 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0553 9e6cb45094b8555e4591b61b72fd90fb 315 Pfam PF12833 Helix-turn-helix domain 233 308 7.2E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0315 fcd4d58112adbce86c56de930c730469 519 Gene3D G3DSA:3.10.580.10 280 433 1.5E-43 T 12-10-2018 ALFP_0315 fcd4d58112adbce86c56de930c730469 519 Pfam PF03471 Transporter associated domain 432 511 1.6E-15 T 12-10-2018 IPR005170 Transporter-associated domain ALFP_0315 fcd4d58112adbce86c56de930c730469 519 SUPERFAMILY SSF56176 429 517 6.0E-17 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 ALFP_0315 fcd4d58112adbce86c56de930c730469 519 Pfam PF03741 Integral membrane protein TerC family 14 203 3.1E-49 T 12-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 ALFP_0315 fcd4d58112adbce86c56de930c730469 519 SMART SM01091 431 512 4.6E-17 T 12-10-2018 IPR005170 Transporter-associated domain ALFP_0315 fcd4d58112adbce86c56de930c730469 519 Gene3D G3DSA:3.30.465.10 437 511 3.0E-14 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 ALFP_0315 fcd4d58112adbce86c56de930c730469 519 SUPERFAMILY SSF54631 286 421 1.89E-23 T 12-10-2018 ALFP_0315 fcd4d58112adbce86c56de930c730469 519 Pfam PF00571 CBS domain 369 418 1.4E-5 T 12-10-2018 IPR000644 CBS domain ALFP_1220 abc628da0cfabd13b31d6c34e19156a6 100 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 13 79 2.6E-22 T 12-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 ALFP_1220 abc628da0cfabd13b31d6c34e19156a6 100 Pfam PF04347 Flagellar biosynthesis protein, FliO 25 86 8.8E-16 T 12-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 ALFP_1459 056cd3420bca31c3ecb2beff5ca568b2 645 Gene3D G3DSA:3.30.70.1450 357 434 3.4E-10 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 ALFP_1459 056cd3420bca31c3ecb2beff5ca568b2 645 Gene3D G3DSA:3.30.70.1450 268 343 2.1E-14 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 ALFP_1459 056cd3420bca31c3ecb2beff5ca568b2 645 SUPERFAMILY SSF116726 354 433 2.09E-12 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 ALFP_1459 056cd3420bca31c3ecb2beff5ca568b2 645 SUPERFAMILY SSF116726 265 344 1.7E-14 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 ALFP_1459 056cd3420bca31c3ecb2beff5ca568b2 645 Pfam PF03600 Citrate transporter 70 588 1.3E-44 T 12-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 ALFP_1459 056cd3420bca31c3ecb2beff5ca568b2 645 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 590 606 - T 12-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 ALFP_1459 056cd3420bca31c3ecb2beff5ca568b2 645 Pfam PF02080 TrkA-C domain 362 430 2.9E-8 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 ALFP_1459 056cd3420bca31c3ecb2beff5ca568b2 645 Pfam PF02080 TrkA-C domain 272 340 9.4E-9 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 ALFP_3471 65454cb96ef52bf813af4701d3dfac82 561 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 114 124 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 ALFP_3471 65454cb96ef52bf813af4701d3dfac82 561 Pfam PF00920 Dehydratase family 27 544 1.1E-187 T 12-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 ALFP_3471 65454cb96ef52bf813af4701d3dfac82 561 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 9 547 1.4E-186 T 12-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 ALFP_3471 65454cb96ef52bf813af4701d3dfac82 561 Gene3D G3DSA:3.50.30.80 369 518 3.6E-51 T 12-10-2018 ALFP_3471 65454cb96ef52bf813af4701d3dfac82 561 SUPERFAMILY SSF52016 369 547 1.49E-53 T 12-10-2018 ALFP_3471 65454cb96ef52bf813af4701d3dfac82 561 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 1 547 41.368 T 12-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 ALFP_3471 65454cb96ef52bf813af4701d3dfac82 561 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 455 466 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 ALFP_3471 65454cb96ef52bf813af4701d3dfac82 561 SUPERFAMILY SSF143975 2 368 3.01E-119 T 12-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 ALFP_3290 b5739d08354efe686edc2ef20e122ff7 182 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 167 1.0E-71 T 12-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 ALFP_3290 b5739d08354efe686edc2ef20e122ff7 182 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 2 176 1.2E-73 T 12-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 ALFP_3290 b5739d08354efe686edc2ef20e122ff7 182 Gene3D G3DSA:2.60.120.10 1 182 1.7E-71 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_3290 b5739d08354efe686edc2ef20e122ff7 182 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 5 174 2.0E-69 T 12-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 ALFP_3290 b5739d08354efe686edc2ef20e122ff7 182 SUPERFAMILY SSF51182 1 177 9.89E-73 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_3352 d62e95868caa1d800bc374073d0dab62 316 Gene3D G3DSA:3.40.190.150 21 306 2.7E-99 T 12-10-2018 ALFP_3352 d62e95868caa1d800bc374073d0dab62 316 Gene3D G3DSA:3.40.190.10 118 241 2.7E-99 T 12-10-2018 ALFP_3352 d62e95868caa1d800bc374073d0dab62 316 SUPERFAMILY SSF53850 107 278 9.41E-8 T 12-10-2018 ALFP_3352 d62e95868caa1d800bc374073d0dab62 316 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 40 311 2.5E-75 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_3352 d62e95868caa1d800bc374073d0dab62 316 PIRSF PIRSF017082 1 316 9.2E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0070 f634b7b29da7120c5e83c5001fba25d7 778 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 276 291 1.4E-9 T 12-10-2018 ALFP_0070 f634b7b29da7120c5e83c5001fba25d7 778 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 131 146 1.4E-9 T 12-10-2018 ALFP_0070 f634b7b29da7120c5e83c5001fba25d7 778 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 1.4E-9 T 12-10-2018 ALFP_0070 f634b7b29da7120c5e83c5001fba25d7 778 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 291 307 1.4E-9 T 12-10-2018 ALFP_0070 f634b7b29da7120c5e83c5001fba25d7 778 Gene3D G3DSA:3.20.20.70 406 763 1.2E-111 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0070 f634b7b29da7120c5e83c5001fba25d7 778 SUPERFAMILY SSF51905 1 353 1.72E-34 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0070 f634b7b29da7120c5e83c5001fba25d7 778 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 408 740 1.3E-66 T 12-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 ALFP_0070 f634b7b29da7120c5e83c5001fba25d7 778 Gene3D G3DSA:3.30.9.20 40 256 1.6E-124 T 12-10-2018 ALFP_0070 f634b7b29da7120c5e83c5001fba25d7 778 SUPERFAMILY SSF51395 405 759 4.23E-113 T 12-10-2018 ALFP_0070 f634b7b29da7120c5e83c5001fba25d7 778 Gene3D G3DSA:3.50.50.60 3 348 1.6E-124 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2732 6408a6145b0e1942c37f0412259eb897 431 Gene3D G3DSA:3.40.640.10 49 300 1.2E-154 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2732 6408a6145b0e1942c37f0412259eb897 431 SUPERFAMILY SSF53383 17 430 3.89E-145 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2732 6408a6145b0e1942c37f0412259eb897 431 Gene3D G3DSA:3.90.1150.10 22 403 1.2E-154 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_2732 6408a6145b0e1942c37f0412259eb897 431 PIRSF PIRSF000412 7 427 2.6E-143 T 12-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 ALFP_2732 6408a6145b0e1942c37f0412259eb897 431 Pfam PF00464 Serine hydroxymethyltransferase 20 396 6.2E-143 T 12-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 ALFP_2732 6408a6145b0e1942c37f0412259eb897 431 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 19 431 45.074 T 12-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 ALFP_1961 bbc14b8be6ffef4a9d6f91fb2d0742c3 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 1 261 43.871 T 12-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 ALFP_1961 bbc14b8be6ffef4a9d6f91fb2d0742c3 262 Gene3D G3DSA:1.20.1180.10 192 261 1.8E-23 T 12-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 ALFP_1961 bbc14b8be6ffef4a9d6f91fb2d0742c3 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 3 260 8.5E-102 T 12-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 ALFP_1961 bbc14b8be6ffef4a9d6f91fb2d0742c3 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 104 138 4.5E-9 T 12-10-2018 IPR001451 Hexapeptide repeat ALFP_1961 bbc14b8be6ffef4a9d6f91fb2d0742c3 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 2 34 1.0E-7 T 12-10-2018 IPR001451 Hexapeptide repeat ALFP_1961 bbc14b8be6ffef4a9d6f91fb2d0742c3 262 SUPERFAMILY SSF51161 2 261 2.92E-77 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily ALFP_1961 bbc14b8be6ffef4a9d6f91fb2d0742c3 262 PIRSF PIRSF000456 1 262 1.4E-102 T 12-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 ALFP_1961 bbc14b8be6ffef4a9d6f91fb2d0742c3 262 Gene3D G3DSA:2.160.10.10 1 191 2.6E-50 T 12-10-2018 ALFP_1961 bbc14b8be6ffef4a9d6f91fb2d0742c3 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 175 260 1.7E-25 T 12-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 ALFP_0689 aaebeba87d14c04298e4870be066b56d 338 TIGRFAM TIGR00433 bioB: biotin synthase 16 312 5.6E-123 T 12-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 ALFP_0689 aaebeba87d14c04298e4870be066b56d 338 SMART SM00729 45 257 2.4E-37 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 ALFP_0689 aaebeba87d14c04298e4870be066b56d 338 Pfam PF04055 Radical SAM superfamily 52 204 2.9E-16 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 ALFP_0689 aaebeba87d14c04298e4870be066b56d 338 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 222 312 7.3E-18 T 12-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 ALFP_0689 aaebeba87d14c04298e4870be066b56d 338 SMART SM00876 222 314 1.5E-42 T 12-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 ALFP_0689 aaebeba87d14c04298e4870be066b56d 338 PIRSF PIRSF001619 1 321 1.2E-132 T 12-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 ALFP_0689 aaebeba87d14c04298e4870be066b56d 338 SUPERFAMILY SSF102114 7 312 5.49E-90 T 12-10-2018 ALFP_0689 aaebeba87d14c04298e4870be066b56d 338 Hamap MF_01694 Biotin synthase [bioB]. 7 315 41.642 T 12-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 ALFP_0689 aaebeba87d14c04298e4870be066b56d 338 Gene3D G3DSA:3.20.20.70 7 317 2.5E-124 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0740 de378936632a1d0b1f8e3ce5606c583f 396 Gene3D G3DSA:3.40.50.1260 171 384 1.5E-149 T 12-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0740 de378936632a1d0b1f8e3ce5606c583f 396 PIRSF PIRSF000724 3 396 4.7E-137 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0740 de378936632a1d0b1f8e3ce5606c583f 396 SUPERFAMILY SSF53748 16 395 2.0E-143 T 12-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0740 de378936632a1d0b1f8e3ce5606c583f 396 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 13 394 39.705 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0740 de378936632a1d0b1f8e3ce5606c583f 396 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 21 31 - T 12-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0740 de378936632a1d0b1f8e3ce5606c583f 396 Pfam PF00162 Phosphoglycerate kinase 17 384 3.7E-140 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0740 de378936632a1d0b1f8e3ce5606c583f 396 Gene3D G3DSA:3.40.50.1260 17 392 1.5E-149 T 12-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0740 de378936632a1d0b1f8e3ce5606c583f 396 PRINTS PR00477 Phosphoglycerate kinase family signature 370 387 1.8E-80 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0740 de378936632a1d0b1f8e3ce5606c583f 396 PRINTS PR00477 Phosphoglycerate kinase family signature 314 339 1.8E-80 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0740 de378936632a1d0b1f8e3ce5606c583f 396 PRINTS PR00477 Phosphoglycerate kinase family signature 169 191 1.8E-80 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0740 de378936632a1d0b1f8e3ce5606c583f 396 PRINTS PR00477 Phosphoglycerate kinase family signature 347 358 1.8E-80 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0740 de378936632a1d0b1f8e3ce5606c583f 396 PRINTS PR00477 Phosphoglycerate kinase family signature 16 32 1.8E-80 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0740 de378936632a1d0b1f8e3ce5606c583f 396 PRINTS PR00477 Phosphoglycerate kinase family signature 138 160 1.8E-80 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0740 de378936632a1d0b1f8e3ce5606c583f 396 PRINTS PR00477 Phosphoglycerate kinase family signature 192 211 1.8E-80 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0740 de378936632a1d0b1f8e3ce5606c583f 396 PRINTS PR00477 Phosphoglycerate kinase family signature 37 59 1.8E-80 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_0740 de378936632a1d0b1f8e3ce5606c583f 396 PRINTS PR00477 Phosphoglycerate kinase family signature 110 125 1.8E-80 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_2884 64168d1c0e1be47a59cb5f4b03dc452b 548 SUPERFAMILY SSF52029 184 376 2.09E-83 T 12-10-2018 IPR027409 GroEL-like apical domain superfamily ALFP_2884 64168d1c0e1be47a59cb5f4b03dc452b 548 PRINTS PR00298 60kDa chaperonin signature 398 419 9.1E-75 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 ALFP_2884 64168d1c0e1be47a59cb5f4b03dc452b 548 PRINTS PR00298 60kDa chaperonin signature 83 110 9.1E-75 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 ALFP_2884 64168d1c0e1be47a59cb5f4b03dc452b 548 PRINTS PR00298 60kDa chaperonin signature 268 291 9.1E-75 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 ALFP_2884 64168d1c0e1be47a59cb5f4b03dc452b 548 PRINTS PR00298 60kDa chaperonin signature 27 53 9.1E-75 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 ALFP_2884 64168d1c0e1be47a59cb5f4b03dc452b 548 PRINTS PR00298 60kDa chaperonin signature 350 375 9.1E-75 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 ALFP_2884 64168d1c0e1be47a59cb5f4b03dc452b 548 SUPERFAMILY SSF48592 7 521 4.43E-77 T 12-10-2018 IPR027413 GroEL-like equatorial domain superfamily ALFP_2884 64168d1c0e1be47a59cb5f4b03dc452b 548 Gene3D G3DSA:3.30.260.10 136 410 2.4E-238 T 12-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily ALFP_2884 64168d1c0e1be47a59cb5f4b03dc452b 548 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 2.5E-256 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 ALFP_2884 64168d1c0e1be47a59cb5f4b03dc452b 548 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 521 7.7E-97 T 12-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 ALFP_2884 64168d1c0e1be47a59cb5f4b03dc452b 548 Hamap MF_00600 60 kDa chaperonin [groL]. 2 545 41.744 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 ALFP_2884 64168d1c0e1be47a59cb5f4b03dc452b 548 SUPERFAMILY SSF54849 137 203 9.61E-25 T 12-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily ALFP_2884 64168d1c0e1be47a59cb5f4b03dc452b 548 Gene3D G3DSA:3.50.7.10 192 372 2.4E-238 T 12-10-2018 IPR027409 GroEL-like apical domain superfamily ALFP_2884 64168d1c0e1be47a59cb5f4b03dc452b 548 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 12-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 ALFP_2884 64168d1c0e1be47a59cb5f4b03dc452b 548 Gene3D G3DSA:1.10.560.10 8 521 2.4E-238 T 12-10-2018 IPR027413 GroEL-like equatorial domain superfamily ALFP_3639 466ce2f988df2cba160b3b90de23339a 217 SUPERFAMILY SSF46689 3 70 1.74E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_3639 466ce2f988df2cba160b3b90de23339a 217 SUPERFAMILY SSF48498 83 214 1.33E-25 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily ALFP_3639 466ce2f988df2cba160b3b90de23339a 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 1.3E-5 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_3639 466ce2f988df2cba160b3b90de23339a 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 1.3E-5 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_3639 466ce2f988df2cba160b3b90de23339a 217 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 57 6.7E-13 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_3639 466ce2f988df2cba160b3b90de23339a 217 Gene3D G3DSA:1.10.357.10 9 214 1.8E-57 T 12-10-2018 ALFP_1736 d3f13d32e017d689b8367ac26e2de372 281 Pfam PF01418 Helix-turn-helix domain, rpiR family 11 71 1.7E-15 T 12-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 ALFP_1736 d3f13d32e017d689b8367ac26e2de372 281 SUPERFAMILY SSF46689 5 77 3.23E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1736 d3f13d32e017d689b8367ac26e2de372 281 Gene3D G3DSA:3.40.50.10490 95 274 3.1E-24 T 12-10-2018 ALFP_1736 d3f13d32e017d689b8367ac26e2de372 281 SUPERFAMILY SSF53697 98 262 2.72E-13 T 12-10-2018 ALFP_1736 d3f13d32e017d689b8367ac26e2de372 281 Gene3D G3DSA:1.10.10.10 3 77 2.7E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1736 d3f13d32e017d689b8367ac26e2de372 281 Pfam PF01380 SIS domain 127 250 7.7E-9 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 ALFP_0308 8d9bd03c9a6c56b4a35c96a988286168 350 SUPERFAMILY SSF81345 15 346 1.96E-78 T 12-10-2018 IPR037294 ABC transporter, BtuC-like ALFP_0308 8d9bd03c9a6c56b4a35c96a988286168 350 Pfam PF01032 FecCD transport family 32 346 6.5E-84 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 ALFP_0308 8d9bd03c9a6c56b4a35c96a988286168 350 Gene3D G3DSA:1.10.3470.10 19 350 2.1E-96 T 12-10-2018 IPR037294 ABC transporter, BtuC-like ALFP_2975 8e12d7d68f7b44b65dab6b2ab9821a15 291 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 181 280 6.0E-18 T 12-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal ALFP_2975 8e12d7d68f7b44b65dab6b2ab9821a15 291 SMART SM01092 181 282 6.4E-26 T 12-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal ALFP_2975 8e12d7d68f7b44b65dab6b2ab9821a15 291 SUPERFAMILY SSF55447 179 284 2.62E-23 T 12-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily ALFP_2975 8e12d7d68f7b44b65dab6b2ab9821a15 291 Gene3D G3DSA:3.30.465.10 58 174 1.8E-31 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 ALFP_2975 8e12d7d68f7b44b65dab6b2ab9821a15 291 Gene3D G3DSA:3.30.390.50 179 289 4.7E-26 T 12-10-2018 ALFP_2975 8e12d7d68f7b44b65dab6b2ab9821a15 291 SUPERFAMILY SSF56176 2 172 1.36E-46 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 ALFP_2975 8e12d7d68f7b44b65dab6b2ab9821a15 291 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 6 172 2.0E-42 T 12-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 ALFP_2975 8e12d7d68f7b44b65dab6b2ab9821a15 291 Gene3D G3DSA:3.30.43.10 1 56 3.6E-23 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 ALFP_0751 dc2bd057f76a1b094269e28c2d78ca3b 276 Gene3D G3DSA:3.40.50.1820 10 274 3.0E-43 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0751 dc2bd057f76a1b094269e28c2d78ca3b 276 Pfam PF12697 Alpha/beta hydrolase family 42 265 5.4E-17 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_0751 dc2bd057f76a1b094269e28c2d78ca3b 276 SUPERFAMILY SSF53474 24 273 1.14E-44 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2661 5c56e5078d33cc3306a3cc2b87583493 197 Gene3D G3DSA:3.30.1450.10 92 165 3.3E-29 T 12-10-2018 IPR037873 BamE-like ALFP_2661 5c56e5078d33cc3306a3cc2b87583493 197 Pfam PF04355 SmpA / OmlA family 86 155 3.9E-26 T 12-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 ALFP_2661 5c56e5078d33cc3306a3cc2b87583493 197 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 54 181 29.299 T 12-10-2018 IPR026592 Outer membrane protein assembly factor BamE ALFP_3019 633f9641f07a809b431aeb3c7a1c4d4b 548 Gene3D G3DSA:3.30.300.310 436 538 3.2E-29 T 12-10-2018 ALFP_3019 633f9641f07a809b431aeb3c7a1c4d4b 548 Pfam PF00501 AMP-binding enzyme 17 440 4.1E-91 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_3019 633f9641f07a809b431aeb3c7a1c4d4b 548 Pfam PF13193 AMP-binding enzyme C-terminal domain 449 524 4.7E-17 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain ALFP_3019 633f9641f07a809b431aeb3c7a1c4d4b 548 SUPERFAMILY SSF56801 4 537 4.97E-132 T 12-10-2018 ALFP_3019 633f9641f07a809b431aeb3c7a1c4d4b 548 ProSitePatterns PS00455 Putative AMP-binding domain signature. 183 194 - T 12-10-2018 IPR020845 AMP-binding, conserved site ALFP_3019 633f9641f07a809b431aeb3c7a1c4d4b 548 Gene3D G3DSA:3.40.50.12780 2 435 1.1E-123 T 12-10-2018 ALFP_1594 80c3f396b2af8bb8757b5bb96fb61539 103 Gene3D G3DSA:1.10.10.10 6 103 4.2E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1594 80c3f396b2af8bb8757b5bb96fb61539 103 SUPERFAMILY SSF46785 14 102 5.83E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1594 80c3f396b2af8bb8757b5bb96fb61539 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 1.4E-10 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_1594 80c3f396b2af8bb8757b5bb96fb61539 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 22 37 1.4E-10 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_1594 80c3f396b2af8bb8757b5bb96fb61539 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 70 85 1.4E-10 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_1594 80c3f396b2af8bb8757b5bb96fb61539 103 SMART SM00418 20 99 9.1E-24 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_1594 80c3f396b2af8bb8757b5bb96fb61539 103 Pfam PF01022 Bacterial regulatory protein, arsR family 27 74 3.9E-14 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_1729 b203ed5a5183ebeb1a72c232baf77069 419 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 399 419 1.8E-38 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 ALFP_1729 b203ed5a5183ebeb1a72c232baf77069 419 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 54 77 1.8E-38 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 ALFP_1729 b203ed5a5183ebeb1a72c232baf77069 419 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 280 301 1.8E-38 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 ALFP_1729 b203ed5a5183ebeb1a72c232baf77069 419 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 313 337 1.8E-38 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 ALFP_1729 b203ed5a5183ebeb1a72c232baf77069 419 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 337 360 1.8E-38 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 ALFP_1729 b203ed5a5183ebeb1a72c232baf77069 419 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 96 116 1.8E-38 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 ALFP_1729 b203ed5a5183ebeb1a72c232baf77069 419 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 384 399 1.8E-38 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 ALFP_1729 b203ed5a5183ebeb1a72c232baf77069 419 Pfam PF13437 HlyD family secretion protein 267 366 2.7E-16 T 12-10-2018 ALFP_1729 b203ed5a5183ebeb1a72c232baf77069 419 ProSitePatterns PS00543 HlyD family secretion proteins signature. 384 406 - T 12-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 ALFP_1729 b203ed5a5183ebeb1a72c232baf77069 419 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 215 419 7.5E-64 T 12-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 ALFP_1729 b203ed5a5183ebeb1a72c232baf77069 419 Gene3D G3DSA:2.40.50.100 84 304 1.6E-21 T 12-10-2018 ALFP_1729 b203ed5a5183ebeb1a72c232baf77069 419 Gene3D G3DSA:2.40.30.170 72 397 1.6E-21 T 12-10-2018 ALFP_1729 b203ed5a5183ebeb1a72c232baf77069 419 Gene3D G3DSA:1.10.287.470 118 267 1.6E-21 T 12-10-2018 ALFP_2647 a915e9d50d21bd1249a17844feca61d1 196 SMART SM00347 64 158 0.0013 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2647 a915e9d50d21bd1249a17844feca61d1 196 Pfam PF01047 MarR family 73 128 1.7E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2647 a915e9d50d21bd1249a17844feca61d1 196 SUPERFAMILY SSF46785 46 171 8.06E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2647 a915e9d50d21bd1249a17844feca61d1 196 Gene3D G3DSA:1.10.10.10 15 176 3.3E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1584 291ad0aa1147f3746713d6095f31dc72 390 SUPERFAMILY SSF69572 7 325 3.14E-92 T 12-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 ALFP_1584 291ad0aa1147f3746713d6095f31dc72 390 Gene3D G3DSA:3.40.250.10 276 387 4.8E-21 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_1584 291ad0aa1147f3746713d6095f31dc72 390 Gene3D G3DSA:3.40.50.720 13 263 3.7E-81 T 12-10-2018 ALFP_1584 291ad0aa1147f3746713d6095f31dc72 390 Pfam PF00899 ThiF family 21 255 1.0E-57 T 12-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 ALFP_1584 291ad0aa1147f3746713d6095f31dc72 390 SUPERFAMILY SSF52821 291 384 7.48E-11 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_1584 291ad0aa1147f3746713d6095f31dc72 390 SMART SM00450 288 385 5.0E-18 T 12-10-2018 IPR001763 Rhodanese-like domain ALFP_1584 291ad0aa1147f3746713d6095f31dc72 390 Pfam PF00581 Rhodanese-like domain 290 381 4.0E-10 T 12-10-2018 IPR001763 Rhodanese-like domain ALFP_2859 ec681bc981ba8a6e15a1e51162d6381a 507 SUPERFAMILY SSF100950 226 495 5.18E-80 T 12-10-2018 IPR037171 NagB/RpiA transferase-like ALFP_2859 ec681bc981ba8a6e15a1e51162d6381a 507 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 10 215 7.1E-27 T 12-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 ALFP_2859 ec681bc981ba8a6e15a1e51162d6381a 507 Gene3D G3DSA:3.40.1080.20 336 477 1.9E-38 T 12-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily ALFP_2859 ec681bc981ba8a6e15a1e51162d6381a 507 SUPERFAMILY SSF100950 3 222 3.69E-69 T 12-10-2018 IPR037171 NagB/RpiA transferase-like ALFP_2859 ec681bc981ba8a6e15a1e51162d6381a 507 Gene3D G3DSA:3.40.1080.10 13 182 1.2E-15 T 12-10-2018 ALFP_2859 ec681bc981ba8a6e15a1e51162d6381a 507 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 12 494 3.0E-225 T 12-10-2018 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 ALFP_2859 ec681bc981ba8a6e15a1e51162d6381a 507 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 321 463 3.1E-41 T 12-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain ALFP_2048 9fc192280cea025a2d03d7639d88206b 163 SUPERFAMILY SSF53927 1 147 2.51E-51 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 ALFP_2048 9fc192280cea025a2d03d7639d88206b 163 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 47 84 - T 12-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 ALFP_2048 9fc192280cea025a2d03d7639d88206b 163 Pfam PF14437 MafB19-like deaminase 2 143 2.2E-26 T 12-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 ALFP_2048 9fc192280cea025a2d03d7639d88206b 163 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 1 143 42.21 T 12-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 ALFP_2048 9fc192280cea025a2d03d7639d88206b 163 Gene3D G3DSA:3.40.140.10 1 157 4.5E-54 T 12-10-2018 ALFP_3720 4a483b2eb11511a5dd7023b54bba2f03 242 Gene3D G3DSA:3.40.50.300 5 242 1.7E-64 T 12-10-2018 ALFP_3720 4a483b2eb11511a5dd7023b54bba2f03 242 SMART SM00382 34 227 9.6E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3720 4a483b2eb11511a5dd7023b54bba2f03 242 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3720 4a483b2eb11511a5dd7023b54bba2f03 242 Pfam PF00005 ABC transporter 25 170 1.1E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3720 4a483b2eb11511a5dd7023b54bba2f03 242 SUPERFAMILY SSF52540 7 240 3.51E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0429 271eb8c2a6f08fb3dbf4b627483d8416 251 Pfam PF01614 Bacterial transcriptional regulator 130 248 4.9E-17 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal ALFP_0429 271eb8c2a6f08fb3dbf4b627483d8416 251 SMART SM00346 10 100 0.0014 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_0429 271eb8c2a6f08fb3dbf4b627483d8416 251 Gene3D G3DSA:1.10.10.10 8 82 9.8E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0429 271eb8c2a6f08fb3dbf4b627483d8416 251 Gene3D G3DSA:3.30.450.40 83 251 4.5E-36 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_0429 271eb8c2a6f08fb3dbf4b627483d8416 251 SUPERFAMILY SSF46785 10 81 4.77E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0429 271eb8c2a6f08fb3dbf4b627483d8416 251 SUPERFAMILY SSF55781 85 249 1.31E-34 T 12-10-2018 ALFP_0429 271eb8c2a6f08fb3dbf4b627483d8416 251 Pfam PF09339 IclR helix-turn-helix domain 14 61 1.4E-9 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_1407 b7c0dbf331270c9250b4fc71e3ffe908 359 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 43 345 8.3E-67 T 12-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 ALFP_1407 b7c0dbf331270c9250b4fc71e3ffe908 359 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 10 349 35.919 T 12-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 ALFP_1407 b7c0dbf331270c9250b4fc71e3ffe908 359 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 23 343 2.5E-94 T 12-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 ALFP_1407 b7c0dbf331270c9250b4fc71e3ffe908 359 SUPERFAMILY SSF52540 55 194 1.73E-10 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0696 7d05383ceadab949fa60555da682238f 376 Pfam PF04055 Radical SAM superfamily 97 245 3.2E-7 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 ALFP_0696 7d05383ceadab949fa60555da682238f 376 Gene3D G3DSA:3.20.20.70 91 350 2.1E-19 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0696 7d05383ceadab949fa60555da682238f 376 TIGRFAM TIGR03977 rSAM_pair_HxsC: His-Xaa-Ser system radical SAM maturase HxsC 68 358 9.6E-102 T 12-10-2018 IPR024032 His-Xaa-Ser system radical SAM maturase HxsC ALFP_0696 7d05383ceadab949fa60555da682238f 376 SUPERFAMILY SSF102114 96 353 2.49E-22 T 12-10-2018 ALFP_2640 8ed786e36a9ecac45de3c07a483a0bd1 317 SMART SM00858 51 111 1.1E-7 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 ALFP_2640 8ed786e36a9ecac45de3c07a483a0bd1 317 Pfam PF08666 SAF domain 53 108 4.9E-8 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 ALFP_2640 8ed786e36a9ecac45de3c07a483a0bd1 317 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 11 311 6.8E-46 T 12-10-2018 IPR017592 Pilus assembly, Flp-type CpaB ALFP_2640 8ed786e36a9ecac45de3c07a483a0bd1 317 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 113 226 2.5E-27 T 12-10-2018 IPR031571 Flp pilus assembly protein RcpC/CpaB domain ALFP_1532 ba2b8eebe20d3390b6c87ad25b77722c 342 Gene3D G3DSA:3.20.20.210 1 342 2.3E-132 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 ALFP_1532 ba2b8eebe20d3390b6c87ad25b77722c 342 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 5 330 2.4E-38 T 12-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 ALFP_1532 ba2b8eebe20d3390b6c87ad25b77722c 342 SUPERFAMILY SSF51726 7 340 3.4E-69 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 ALFP_1532 ba2b8eebe20d3390b6c87ad25b77722c 342 PIRSF PIRSF005632 1 342 5.8E-196 T 12-10-2018 IPR016456 Predicted cobalamin-independent methionine synthase, catalytic subunit ALFP_0896 a4363b9d7917c700270604f050ea9d22 212 PIRSF PIRSF005461 1 212 2.8E-64 T 12-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 ALFP_0896 a4363b9d7917c700270604f050ea9d22 212 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 12 210 28.063 T 12-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 ALFP_0896 a4363b9d7917c700270604f050ea9d22 212 Pfam PF01728 FtsJ-like methyltransferase 28 208 7.3E-50 T 12-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 ALFP_0896 a4363b9d7917c700270604f050ea9d22 212 Gene3D G3DSA:3.40.50.150 27 212 5.6E-51 T 12-10-2018 ALFP_0896 a4363b9d7917c700270604f050ea9d22 212 SUPERFAMILY SSF53335 3 211 3.8E-32 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_0999 00a61167434cd99b2955bec96d2de5d5 389 Pfam PF01070 FMN-dependent dehydrogenase 16 378 2.1E-131 T 12-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 ALFP_0999 00a61167434cd99b2955bec96d2de5d5 389 PIRSF PIRSF000138 1 382 1.7E-122 T 12-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 ALFP_0999 00a61167434cd99b2955bec96d2de5d5 389 Gene3D G3DSA:3.20.20.70 5 383 2.2E-132 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0999 00a61167434cd99b2955bec96d2de5d5 389 SUPERFAMILY SSF51395 5 378 4.21E-105 T 12-10-2018 ALFP_0999 00a61167434cd99b2955bec96d2de5d5 389 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 276 282 - T 12-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 ALFP_3030 88e8bdde822e8d4544c548295f7f2850 135 SUPERFAMILY SSF101756 34 133 1.7E-22 T 12-10-2018 IPR036700 Bacterial OB-fold superfamily ALFP_3030 88e8bdde822e8d4544c548295f7f2850 135 Pfam PF04076 Bacterial OB fold (BOF) protein 26 131 2.5E-18 T 12-10-2018 IPR005220 Bacterial OB-fold ALFP_3030 88e8bdde822e8d4544c548295f7f2850 135 Gene3D G3DSA:2.40.50.200 22 135 1.2E-25 T 12-10-2018 IPR036700 Bacterial OB-fold superfamily ALFP_1483 c98534984494c1bc30de3b8af21b0f2d 397 Pfam PF00266 Aminotransferase class-V 7 367 1.5E-83 T 12-10-2018 IPR000192 Aminotransferase class V domain ALFP_1483 c98534984494c1bc30de3b8af21b0f2d 397 PIRSF PIRSF005572 4 384 1.0E-127 T 12-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 ALFP_1483 c98534984494c1bc30de3b8af21b0f2d 397 Gene3D G3DSA:3.90.1150.10 7 376 1.3E-156 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_1483 c98534984494c1bc30de3b8af21b0f2d 397 SUPERFAMILY SSF53383 5 381 7.37E-114 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_1483 c98534984494c1bc30de3b8af21b0f2d 397 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 12-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site ALFP_1483 c98534984494c1bc30de3b8af21b0f2d 397 Gene3D G3DSA:3.40.640.10 18 262 1.3E-156 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_1483 c98534984494c1bc30de3b8af21b0f2d 397 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 3 395 50.338 T 12-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 ALFP_1740 5c9bba6c7de2dcb82c8cbc7e49f6d1b9 313 Gene3D G3DSA:1.10.3720.10 84 305 7.0E-26 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1740 5c9bba6c7de2dcb82c8cbc7e49f6d1b9 313 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 312 2.5E-40 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_1740 5c9bba6c7de2dcb82c8cbc7e49f6d1b9 313 SUPERFAMILY SSF161098 90 295 6.67E-19 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2800 d9b47a22b48391943e583a54bdb5f736 70 Gene3D G3DSA:2.60.260.40 10 62 1.6E-13 T 12-10-2018 ALFP_2800 d9b47a22b48391943e583a54bdb5f736 70 Pfam PF10276 Zinc-finger domain 24 59 4.0E-11 T 12-10-2018 IPR019401 Zinc finger, CHCC-type Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_1284 e3521b1259ebbcf5b392f07d97c4fb90 436 Pfam PF00324 Amino acid permease 2 425 6.4E-93 T 12-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 ALFP_1284 e3521b1259ebbcf5b392f07d97c4fb90 436 PIRSF PIRSF006060 2 433 1.6E-55 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 ALFP_1284 e3521b1259ebbcf5b392f07d97c4fb90 436 ProSitePatterns PS00218 Amino acid permeases signature. 10 40 - T 12-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 ALFP_1284 e3521b1259ebbcf5b392f07d97c4fb90 436 Gene3D G3DSA:1.20.1740.10 1 433 1.8E-54 T 12-10-2018 ALFP_2454 4b90e0ff0bf8e97e5ad8f7685da84896 125 SUPERFAMILY SSF55159 10 121 6.15E-25 T 12-10-2018 IPR036877 SUI1 domain superfamily GO:0003743|GO:0006413 ALFP_2454 4b90e0ff0bf8e97e5ad8f7685da84896 125 Gene3D G3DSA:3.30.780.10 44 124 3.5E-27 T 12-10-2018 ALFP_2454 4b90e0ff0bf8e97e5ad8f7685da84896 125 PIRSF PIRSF037511 2 124 2.4E-33 T 12-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 ALFP_2454 4b90e0ff0bf8e97e5ad8f7685da84896 125 Pfam PF01253 Translation initiation factor SUI1 46 116 3.2E-15 T 12-10-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 ALFP_3583 8c1ddc2cba34427b9189faf18031aaa6 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 5.2E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_3583 8c1ddc2cba34427b9189faf18031aaa6 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 9 22 5.2E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_3583 8c1ddc2cba34427b9189faf18031aaa6 196 Gene3D G3DSA:1.10.357.10 53 191 1.5E-10 T 12-10-2018 ALFP_3583 8c1ddc2cba34427b9189faf18031aaa6 196 Gene3D G3DSA:1.10.10.60 1 52 7.5E-17 T 12-10-2018 ALFP_3583 8c1ddc2cba34427b9189faf18031aaa6 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 54 1.5E-15 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_3583 8c1ddc2cba34427b9189faf18031aaa6 196 SUPERFAMILY SSF46689 3 77 1.99E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0260 aa851a9bd43f4c0d7daef4793e6da4dc 256 SUPERFAMILY SSF46785 179 248 3.42E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0260 aa851a9bd43f4c0d7daef4793e6da4dc 256 Pfam PF00027 Cyclic nucleotide-binding domain 63 145 2.1E-16 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain ALFP_0260 aa851a9bd43f4c0d7daef4793e6da4dc 256 Pfam PF13545 Crp-like helix-turn-helix domain 179 248 3.9E-14 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 ALFP_0260 aa851a9bd43f4c0d7daef4793e6da4dc 256 SMART SM00100 41 159 1.4E-16 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain ALFP_0260 aa851a9bd43f4c0d7daef4793e6da4dc 256 SUPERFAMILY SSF51206 36 170 7.99E-30 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like ALFP_0260 aa851a9bd43f4c0d7daef4793e6da4dc 256 Gene3D G3DSA:2.60.120.10 28 173 4.1E-37 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_0260 aa851a9bd43f4c0d7daef4793e6da4dc 256 SMART SM00419 193 241 1.9E-7 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 ALFP_0260 aa851a9bd43f4c0d7daef4793e6da4dc 256 Gene3D G3DSA:1.10.10.10 174 249 1.3E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2951 6f951225d15c5909a1f83ce0e6f2003a 316 Pfam PF01548 Transposase 9 145 4.7E-19 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 ALFP_2951 6f951225d15c5909a1f83ce0e6f2003a 316 Pfam PF02371 Transposase IS116/IS110/IS902 family 189 265 5.0E-20 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 ALFP_3661 698360ee0dd4853be0cb65a1c409662c 91 PIRSF PIRSF002144 1 91 1.1E-32 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3661 698360ee0dd4853be0cb65a1c409662c 91 SUPERFAMILY SSF54570 2 84 3.53E-36 T 12-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3661 698360ee0dd4853be0cb65a1c409662c 91 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.746 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3661 698360ee0dd4853be0cb65a1c409662c 91 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 5.4E-24 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3661 698360ee0dd4853be0cb65a1c409662c 91 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 5.4E-24 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3661 698360ee0dd4853be0cb65a1c409662c 91 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 5.4E-24 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3661 698360ee0dd4853be0cb65a1c409662c 91 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 6.3E-46 T 12-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 ALFP_3661 698360ee0dd4853be0cb65a1c409662c 91 Gene3D G3DSA:3.30.860.10 1 91 2.5E-41 T 12-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3661 698360ee0dd4853be0cb65a1c409662c 91 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 12-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3661 698360ee0dd4853be0cb65a1c409662c 91 Pfam PF00203 Ribosomal protein S19 3 83 2.6E-36 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_0978 40b193ee8f6f4e703c7dcc3d1d2c7b0d 223 SUPERFAMILY SSF48150 44 215 2.67E-40 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 ALFP_0978 40b193ee8f6f4e703c7dcc3d1d2c7b0d 223 SMART SM00478 64 217 1.6E-16 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 ALFP_0978 40b193ee8f6f4e703c7dcc3d1d2c7b0d 223 Gene3D G3DSA:1.10.340.30 54 164 2.7E-54 T 12-10-2018 ALFP_0978 40b193ee8f6f4e703c7dcc3d1d2c7b0d 223 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 60 190 3.5E-11 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 ALFP_0978 40b193ee8f6f4e703c7dcc3d1d2c7b0d 223 Gene3D G3DSA:1.10.1670.40 28 214 2.7E-54 T 12-10-2018 ALFP_1847 7fd0b828a44e4a8998f5f4cf820cad85 178 Gene3D G3DSA:3.40.50.300 6 170 2.6E-6 T 12-10-2018 ALFP_1847 7fd0b828a44e4a8998f5f4cf820cad85 178 SUPERFAMILY SSF52540 6 172 1.0E-13 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1847 7fd0b828a44e4a8998f5f4cf820cad85 178 Pfam PF13521 AAA domain 7 168 4.0E-40 T 12-10-2018 IPR038727 NadR/Ttd14, AAA domain ALFP_0124 5771bbda6fec80f1f65d067848fd42f3 433 PIRSF PIRSF006066 1 433 1.5E-117 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_0124 5771bbda6fec80f1f65d067848fd42f3 433 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 427 6.2E-98 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_0124 5771bbda6fec80f1f65d067848fd42f3 433 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 421 3.7E-94 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_3616 ab675b8dd345c9d733a42231a4180987 132 Pfam PF00411 Ribosomal protein S11 22 131 1.7E-50 T 12-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 ALFP_3616 ab675b8dd345c9d733a42231a4180987 132 SUPERFAMILY SSF53137 19 132 3.92E-47 T 12-10-2018 ALFP_3616 ab675b8dd345c9d733a42231a4180987 132 ProSitePatterns PS00054 Ribosomal protein S11 signature. 100 122 - T 12-10-2018 IPR018102 Ribosomal S11, conserved site ALFP_3616 ab675b8dd345c9d733a42231a4180987 132 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 13 129 8.2E-56 T 12-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3616 ab675b8dd345c9d733a42231a4180987 132 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 132 33.0 T 12-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 ALFP_3616 ab675b8dd345c9d733a42231a4180987 132 Gene3D G3DSA:3.30.420.80 4 132 5.3E-55 T 12-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 ALFP_3616 ab675b8dd345c9d733a42231a4180987 132 PIRSF PIRSF002131 1 132 2.8E-53 T 12-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 ALFP_1876 f92429538acd03e3696df16512be5d39 253 Pfam PF07291 Methylamine utilisation protein MauE 119 246 1.3E-4 T 12-10-2018 IPR009908 Methylamine utilisation protein, MauE GO:0016021|GO:0030416 ALFP_1876 f92429538acd03e3696df16512be5d39 253 Gene3D G3DSA:3.40.30.10 14 82 6.9E-11 T 12-10-2018 ALFP_1876 f92429538acd03e3696df16512be5d39 253 SUPERFAMILY SSF52833 7 81 2.37E-14 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_1876 f92429538acd03e3696df16512be5d39 253 Pfam PF00462 Glutaredoxin 20 71 1.8E-6 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 ALFP_2072 c99593d5e35eb74d17b15b68fbc7238d 488 SMART SM00387 374 484 2.5E-28 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2072 c99593d5e35eb74d17b15b68fbc7238d 488 SUPERFAMILY SSF47384 256 321 8.83E-8 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_2072 c99593d5e35eb74d17b15b68fbc7238d 488 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 443 7.8E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2072 c99593d5e35eb74d17b15b68fbc7238d 488 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 462 7.8E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2072 c99593d5e35eb74d17b15b68fbc7238d 488 PRINTS PR00344 Bacterial sensor protein C-terminal signature 468 481 7.8E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2072 c99593d5e35eb74d17b15b68fbc7238d 488 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 429 7.8E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2072 c99593d5e35eb74d17b15b68fbc7238d 488 SMART SM00388 260 329 2.3E-5 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_2072 c99593d5e35eb74d17b15b68fbc7238d 488 Gene3D G3DSA:3.30.565.10 331 487 7.0E-37 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_2072 c99593d5e35eb74d17b15b68fbc7238d 488 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 374 482 5.5E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2072 c99593d5e35eb74d17b15b68fbc7238d 488 Gene3D G3DSA:1.10.287.130 265 327 4.8E-16 T 12-10-2018 ALFP_2072 c99593d5e35eb74d17b15b68fbc7238d 488 SUPERFAMILY SSF55874 329 480 1.24E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_2072 c99593d5e35eb74d17b15b68fbc7238d 488 Pfam PF00512 His Kinase A (phospho-acceptor) domain 260 323 2.4E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_0053 eddfc5c51bfdf339543a38a5bdd0fd1c 354 Gene3D G3DSA:3.40.50.300 3 220 5.0E-66 T 12-10-2018 ALFP_0053 eddfc5c51bfdf339543a38a5bdd0fd1c 354 Gene3D G3DSA:2.40.50.940 221 348 1.7E-7 T 12-10-2018 ALFP_0053 eddfc5c51bfdf339543a38a5bdd0fd1c 354 Pfam PF08402 TOBE domain 276 350 8.6E-8 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 ALFP_0053 eddfc5c51bfdf339543a38a5bdd0fd1c 354 Gene3D G3DSA:2.40.50.140 283 344 1.7E-7 T 12-10-2018 ALFP_0053 eddfc5c51bfdf339543a38a5bdd0fd1c 354 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0053 eddfc5c51bfdf339543a38a5bdd0fd1c 354 SMART SM00382 27 210 2.9E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0053 eddfc5c51bfdf339543a38a5bdd0fd1c 354 Pfam PF00005 ABC transporter 20 160 5.9E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0053 eddfc5c51bfdf339543a38a5bdd0fd1c 354 SUPERFAMILY SSF52540 3 239 6.74E-82 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0053 eddfc5c51bfdf339543a38a5bdd0fd1c 354 SUPERFAMILY SSF50331 255 349 5.67E-6 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal ALFP_3477 bcf3f3d64e0b04120a77c9e249f8383e 125 Pfam PF01042 Endoribonuclease L-PSP 15 123 1.9E-19 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 ALFP_3477 bcf3f3d64e0b04120a77c9e249f8383e 125 SUPERFAMILY SSF55298 8 125 4.87E-26 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_3477 bcf3f3d64e0b04120a77c9e249f8383e 125 Gene3D G3DSA:3.30.1330.40 8 125 1.3E-25 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_3084 91ad9f5afd2399feafae44853798b866 469 SUPERFAMILY SSF52374 9 305 1.31E-111 T 12-10-2018 ALFP_3084 91ad9f5afd2399feafae44853798b866 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 41 54 3.6E-27 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 ALFP_3084 91ad9f5afd2399feafae44853798b866 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 12 24 3.6E-27 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 ALFP_3084 91ad9f5afd2399feafae44853798b866 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 205 213 3.6E-27 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 ALFP_3084 91ad9f5afd2399feafae44853798b866 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 189 199 3.6E-27 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 ALFP_3084 91ad9f5afd2399feafae44853798b866 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 26 37 3.6E-27 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 ALFP_3084 91ad9f5afd2399feafae44853798b866 469 Gene3D G3DSA:1.10.10.350 385 469 7.0E-15 T 12-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 ALFP_3084 91ad9f5afd2399feafae44853798b866 469 Gene3D G3DSA:3.40.50.620 7 324 1.5E-137 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_3084 91ad9f5afd2399feafae44853798b866 469 Gene3D G3DSA:1.10.8.70 325 384 6.4E-11 T 12-10-2018 IPR020752 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 1 GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 ALFP_3084 91ad9f5afd2399feafae44853798b866 469 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 9 466 9.0E-170 T 12-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 ALFP_3084 91ad9f5afd2399feafae44853798b866 469 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_3084 91ad9f5afd2399feafae44853798b866 469 SUPERFAMILY SSF48163 309 466 4.97E-37 T 12-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 ALFP_3084 91ad9f5afd2399feafae44853798b866 469 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 9 315 2.1E-106 T 12-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 ALFP_3084 91ad9f5afd2399feafae44853798b866 469 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 8 469 30.654 T 12-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 ALFP_2701 23b35100110c1ca6b6a7c6785d8b3cc3 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 146 171 2.6E-16 T 12-10-2018 ALFP_2701 23b35100110c1ca6b6a7c6785d8b3cc3 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 273 280 2.6E-16 T 12-10-2018 ALFP_2701 23b35100110c1ca6b6a7c6785d8b3cc3 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 2.6E-16 T 12-10-2018 ALFP_2701 23b35100110c1ca6b6a7c6785d8b3cc3 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 233 247 2.6E-16 T 12-10-2018 ALFP_2701 23b35100110c1ca6b6a7c6785d8b3cc3 429 SUPERFAMILY SSF51905 1 312 1.05E-44 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2701 23b35100110c1ca6b6a7c6785d8b3cc3 429 Gene3D G3DSA:3.30.390.30 321 410 5.2E-17 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 ALFP_2701 23b35100110c1ca6b6a7c6785d8b3cc3 429 Pfam PF14759 Reductase C-terminal 321 405 1.9E-16 T 12-10-2018 IPR028202 Reductase, C-terminal ALFP_2701 23b35100110c1ca6b6a7c6785d8b3cc3 429 Gene3D G3DSA:3.50.50.60 6 309 1.1E-95 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2701 23b35100110c1ca6b6a7c6785d8b3cc3 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 280 1.4E-24 T 12-10-2018 ALFP_2701 23b35100110c1ca6b6a7c6785d8b3cc3 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 1.4E-24 T 12-10-2018 ALFP_2701 23b35100110c1ca6b6a7c6785d8b3cc3 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 1.4E-24 T 12-10-2018 ALFP_2701 23b35100110c1ca6b6a7c6785d8b3cc3 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.4E-24 T 12-10-2018 ALFP_2701 23b35100110c1ca6b6a7c6785d8b3cc3 429 SUPERFAMILY SSF55424 319 410 1.04E-16 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 ALFP_2701 23b35100110c1ca6b6a7c6785d8b3cc3 429 Gene3D G3DSA:3.50.50.60 114 239 1.1E-95 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2701 23b35100110c1ca6b6a7c6785d8b3cc3 429 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 302 8.1E-66 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ALFP_0508 da85307b555ff57a6f2333625645ff64 256 Gene3D G3DSA:3.30.750.70 70 134 9.5E-9 T 12-10-2018 ALFP_0508 da85307b555ff57a6f2333625645ff64 256 SMART SM00420 6 58 2.7E-18 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 ALFP_0508 da85307b555ff57a6f2333625645ff64 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 5.7E-9 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 ALFP_0508 da85307b555ff57a6f2333625645ff64 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 5.7E-9 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 ALFP_0508 da85307b555ff57a6f2333625645ff64 256 SMART SM01134 72 233 9.0E-57 T 12-10-2018 ALFP_0508 da85307b555ff57a6f2333625645ff64 256 Gene3D G3DSA:1.10.10.10 4 66 5.4E-6 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0508 da85307b555ff57a6f2333625645ff64 256 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 12-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 ALFP_0508 da85307b555ff57a6f2333625645ff64 256 Pfam PF00455 DeoR C terminal sensor domain 74 232 2.1E-42 T 12-10-2018 IPR014036 DeoR C-terminal sensor domain ALFP_0508 da85307b555ff57a6f2333625645ff64 256 SUPERFAMILY SSF100950 73 233 3.01E-24 T 12-10-2018 IPR037171 NagB/RpiA transferase-like ALFP_0508 da85307b555ff57a6f2333625645ff64 256 Pfam PF08220 DeoR-like helix-turn-helix domain 6 59 1.0E-17 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 ALFP_0508 da85307b555ff57a6f2333625645ff64 256 SUPERFAMILY SSF46785 3 72 3.95E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1115 3506c267905140f36c7e70badca2138e 287 Gene3D G3DSA:1.10.600.10 3 275 8.3E-91 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily ALFP_1115 3506c267905140f36c7e70badca2138e 287 TIGRFAM TIGR03465 HpnD: squalene synthase HpnD 10 275 1.6E-118 T 12-10-2018 IPR017828 Squalene synthase HpnD-like GO:0016117|GO:0016767 ALFP_1115 3506c267905140f36c7e70badca2138e 287 SUPERFAMILY SSF48576 3 277 5.61E-92 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily ALFP_1115 3506c267905140f36c7e70badca2138e 287 Pfam PF00494 Squalene/phytoene synthase 13 263 3.0E-83 T 12-10-2018 ALFP_1115 3506c267905140f36c7e70badca2138e 287 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 152 177 - T 12-10-2018 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 ALFP_2498 169270556c30daba47dfc7297e3d9a9a 140 SUPERFAMILY SSF54637 11 136 4.35E-29 T 12-10-2018 IPR029069 HotDog domain superfamily ALFP_2498 169270556c30daba47dfc7297e3d9a9a 140 Gene3D G3DSA:3.10.129.10 11 135 1.9E-31 T 12-10-2018 ALFP_2498 169270556c30daba47dfc7297e3d9a9a 140 Pfam PF13279 Thioesterase-like superfamily 17 122 1.1E-13 T 12-10-2018 ALFP_2919 2031f70429bf73c4d57e3bf5f3db0182 255 SMART SM00382 28 222 7.0E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2919 2031f70429bf73c4d57e3bf5f3db0182 255 Pfam PF00005 ABC transporter 20 173 1.8E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2919 2031f70429bf73c4d57e3bf5f3db0182 255 Gene3D G3DSA:3.40.50.300 1 253 3.5E-58 T 12-10-2018 ALFP_2919 2031f70429bf73c4d57e3bf5f3db0182 255 SUPERFAMILY SSF52540 3 244 3.13E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2502 322d34828aed6f20a5b49accb7ca9b2c 412 Pfam PF11700 Vacuole effluxer Atg22 like 40 400 2.0E-26 T 12-10-2018 IPR024671 Autophagy-related protein 22-like ALFP_2502 322d34828aed6f20a5b49accb7ca9b2c 412 SUPERFAMILY SSF103473 14 395 1.15E-36 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2502 322d34828aed6f20a5b49accb7ca9b2c 412 Gene3D G3DSA:1.20.1250.20 5 198 4.2E-11 T 12-10-2018 ALFP_2502 322d34828aed6f20a5b49accb7ca9b2c 412 Gene3D G3DSA:1.20.1250.20 215 397 1.2E-15 T 12-10-2018 ALFP_3159 cf6b1a46c911e1361e17ed5f54093b31 296 Gene3D G3DSA:3.40.190.10 91 288 3.3E-57 T 12-10-2018 ALFP_3159 cf6b1a46c911e1361e17ed5f54093b31 296 Pfam PF03466 LysR substrate binding domain 89 291 9.8E-38 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_3159 cf6b1a46c911e1361e17ed5f54093b31 296 SUPERFAMILY SSF46785 3 111 9.09E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3159 cf6b1a46c911e1361e17ed5f54093b31 296 Gene3D G3DSA:1.10.10.10 3 89 1.8E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3159 cf6b1a46c911e1361e17ed5f54093b31 296 Gene3D G3DSA:3.40.190.10 163 262 3.3E-57 T 12-10-2018 ALFP_3159 cf6b1a46c911e1361e17ed5f54093b31 296 SUPERFAMILY SSF53850 89 294 3.62E-42 T 12-10-2018 ALFP_3159 cf6b1a46c911e1361e17ed5f54093b31 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.8E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3227 53e4ee29fe3014028b455103ebf42a1d 46 Pfam PF08173 Membrane bound YbgT-like protein 1 27 4.9E-16 T 12-10-2018 IPR012994 Membrane bound YbgT-like ALFP_3227 53e4ee29fe3014028b455103ebf42a1d 46 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 29 1.7E-19 T 12-10-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 ALFP_1289 9baad3657efc87c425b45dfaafaeb198 139 ProDom PD498860 RC0070 103 134 0.002 T 12-10-2018 ALFP_1289 9baad3657efc87c425b45dfaafaeb198 139 Pfam PF07007 Lysozyme inhibitor LprI 32 118 4.8E-22 T 12-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal ALFP_1289 9baad3657efc87c425b45dfaafaeb198 139 Gene3D G3DSA:1.20.1270.180 19 135 7.9E-27 T 12-10-2018 ALFP_0949 51bb51d63f4fe9d65f793eaa42c11bfe 466 Gene3D G3DSA:2.20.200.10 92 336 2.5E-104 T 12-10-2018 ALFP_0949 51bb51d63f4fe9d65f793eaa42c11bfe 466 Gene3D G3DSA:1.20.1600.10 46 448 2.5E-104 T 12-10-2018 ALFP_0949 51bb51d63f4fe9d65f793eaa42c11bfe 466 SUPERFAMILY SSF56954 46 449 3.14E-85 T 12-10-2018 ALFP_0949 51bb51d63f4fe9d65f793eaa42c11bfe 466 Pfam PF02321 Outer membrane efflux protein 264 445 1.6E-18 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_0949 51bb51d63f4fe9d65f793eaa42c11bfe 466 Pfam PF02321 Outer membrane efflux protein 55 240 1.0E-18 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_0949 51bb51d63f4fe9d65f793eaa42c11bfe 466 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 3 447 1.4E-86 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 ALFP_0104 e63d110363a7a499dcc14c9752992bb1 539 Gene3D G3DSA:3.10.105.10 305 509 3.1E-52 T 12-10-2018 ALFP_0104 e63d110363a7a499dcc14c9752992bb1 539 PIRSF PIRSF002741 35 536 1.5E-92 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 ALFP_0104 e63d110363a7a499dcc14c9752992bb1 539 Gene3D G3DSA:3.40.190.10 35 304 5.8E-65 T 12-10-2018 ALFP_0104 e63d110363a7a499dcc14c9752992bb1 539 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 81 455 6.9E-83 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain ALFP_0104 e63d110363a7a499dcc14c9752992bb1 539 SUPERFAMILY SSF53850 38 530 5.79E-128 T 12-10-2018 ALFP_0104 e63d110363a7a499dcc14c9752992bb1 539 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 87 108 - T 12-10-2018 IPR023765 Solute-binding protein family 5, conserved site ALFP_1101 5014d0c6209fc2afc9ae8a6160a3dc18 105 PIRSF PIRSF003135 1 96 9.8E-19 T 12-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 ALFP_1101 5014d0c6209fc2afc9ae8a6160a3dc18 105 SUPERFAMILY SSF50249 1 95 1.2E-15 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_1101 5014d0c6209fc2afc9ae8a6160a3dc18 105 Gene3D G3DSA:2.40.50.140 1 103 6.3E-33 T 12-10-2018 ALFP_1101 5014d0c6209fc2afc9ae8a6160a3dc18 105 TIGRFAM TIGR04418 PriB_gamma: primosomal replication protein PriB 2 95 2.2E-28 T 12-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 ALFP_1101 5014d0c6209fc2afc9ae8a6160a3dc18 105 Hamap MF_00720 Primosomal replication protein N [priB]. 1 96 22.079 T 12-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 ALFP_1572 5a76e2caaf3710b6f0d5b0393f6fde46 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.7E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1572 5a76e2caaf3710b6f0d5b0393f6fde46 293 Gene3D G3DSA:3.40.190.290 91 290 3.0E-51 T 12-10-2018 ALFP_1572 5a76e2caaf3710b6f0d5b0393f6fde46 293 Pfam PF03466 LysR substrate binding domain 88 289 4.9E-40 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1572 5a76e2caaf3710b6f0d5b0393f6fde46 293 SUPERFAMILY SSF46785 3 111 1.87E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1572 5a76e2caaf3710b6f0d5b0393f6fde46 293 Gene3D G3DSA:1.10.10.10 3 89 1.3E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1572 5a76e2caaf3710b6f0d5b0393f6fde46 293 SUPERFAMILY SSF53850 88 292 8.14E-42 T 12-10-2018 ALFP_2070 b92f2541d1945c4665aab9ac38a6caac 166 SUPERFAMILY SSF143744 26 161 2.62E-32 T 12-10-2018 IPR038084 GlcG-like domain superfamily ALFP_2070 b92f2541d1945c4665aab9ac38a6caac 166 Gene3D G3DSA:3.30.450.150 18 162 1.4E-37 T 12-10-2018 IPR038084 GlcG-like domain superfamily ALFP_2070 b92f2541d1945c4665aab9ac38a6caac 166 Pfam PF03928 Haem-degrading 33 158 1.6E-25 T 12-10-2018 IPR005624 Haem-degrading ALFP_3679 a362bacd33d7a212520682f1b7c39baf 148 Gene3D G3DSA:2.60.40.420 20 147 2.5E-47 T 12-10-2018 IPR008972 Cupredoxin ALFP_3679 a362bacd33d7a212520682f1b7c39baf 148 SUPERFAMILY SSF49503 21 146 5.88E-46 T 12-10-2018 IPR008972 Cupredoxin ALFP_3679 a362bacd33d7a212520682f1b7c39baf 148 TIGRFAM TIGR02695 azurin: azurin 22 146 1.4E-64 T 12-10-2018 IPR014068 Azurin ALFP_3679 a362bacd33d7a212520682f1b7c39baf 148 ProDom PD003655 COPPER ELECTRON AZURIN METAL-BINDING PERIPLASMIC PRECURSOR SIGNAL SEQUENCING DIRECT MEMBRANE 24 147 2.0E-62 T 12-10-2018 ALFP_3679 a362bacd33d7a212520682f1b7c39baf 148 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 21 146 6.6E-30 T 12-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 ALFP_3679 a362bacd33d7a212520682f1b7c39baf 148 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 124 140 - T 12-10-2018 IPR028871 Blue (type 1) copper protein, binding site ALFP_1462 31003c6c76f4585d1f3230892aab9cf3 118 Pfam PF06476 Protein of unknown function (DUF1090) 7 104 5.8E-27 T 12-10-2018 IPR009468 Protein of unknown function DUF1090 ALFP_1462 31003c6c76f4585d1f3230892aab9cf3 118 SUPERFAMILY SSF58100 52 114 7.32E-5 T 12-10-2018 ALFP_1666 784c77a8deb12bf46fb74dfac372e237 501 Gene3D G3DSA:1.10.620.20 1 501 6.1E-218 T 12-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 ALFP_1666 784c77a8deb12bf46fb74dfac372e237 501 SUPERFAMILY SSF47240 4 498 2.87E-163 T 12-10-2018 IPR009078 Ferritin-like superfamily ALFP_1666 784c77a8deb12bf46fb74dfac372e237 501 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 21 248 5.2E-69 T 12-10-2018 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 ALFP_1666 784c77a8deb12bf46fb74dfac372e237 501 Pfam PF04945 YHS domain 416 449 5.5E-11 T 12-10-2018 IPR007029 YHS domain ALFP_1885 854506f76c39a183d5df558c27bf72a5 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 91 101 1.8E-37 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_1885 854506f76c39a183d5df558c27bf72a5 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 333 348 1.8E-37 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_1885 854506f76c39a183d5df558c27bf72a5 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 70 88 1.8E-37 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_1885 854506f76c39a183d5df558c27bf72a5 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 29 45 1.8E-37 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_1885 854506f76c39a183d5df558c27bf72a5 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 258 276 1.8E-37 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_1885 854506f76c39a183d5df558c27bf72a5 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 51 67 1.8E-37 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_1885 854506f76c39a183d5df558c27bf72a5 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 281 294 1.8E-37 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_1885 854506f76c39a183d5df558c27bf72a5 374 Pfam PF13458 Periplasmic binding protein 29 355 4.9E-60 T 12-10-2018 IPR028081 Leucine-binding protein domain ALFP_1885 854506f76c39a183d5df558c27bf72a5 374 Gene3D G3DSA:3.40.50.2300 148 276 4.2E-112 T 12-10-2018 ALFP_1885 854506f76c39a183d5df558c27bf72a5 374 SUPERFAMILY SSF53822 27 371 2.96E-91 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_1885 854506f76c39a183d5df558c27bf72a5 374 Gene3D G3DSA:3.40.50.2300 30 349 4.2E-112 T 12-10-2018 ALFP_2364 e7012eb682daf13c3ab0b18ed73d6091 512 Pfam PF12161 HsdM N-terminal domain 6 137 8.1E-16 T 12-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain ALFP_2364 e7012eb682daf13c3ab0b18ed73d6091 512 Gene3D G3DSA:3.40.50.150 168 475 3.4E-70 T 12-10-2018 ALFP_2364 e7012eb682daf13c3ab0b18ed73d6091 512 Pfam PF02384 N-6 DNA Methylase 144 479 4.7E-59 T 12-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 ALFP_2364 e7012eb682daf13c3ab0b18ed73d6091 512 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 274 286 1.4E-18 T 12-10-2018 ALFP_2364 e7012eb682daf13c3ab0b18ed73d6091 512 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 166 182 1.4E-18 T 12-10-2018 ALFP_2364 e7012eb682daf13c3ab0b18ed73d6091 512 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 190 204 1.4E-18 T 12-10-2018 ALFP_2364 e7012eb682daf13c3ab0b18ed73d6091 512 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 304 328 1.4E-18 T 12-10-2018 ALFP_2364 e7012eb682daf13c3ab0b18ed73d6091 512 SUPERFAMILY SSF53335 5 512 3.8E-120 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_2364 e7012eb682daf13c3ab0b18ed73d6091 512 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 277 283 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 ALFP_2364 e7012eb682daf13c3ab0b18ed73d6091 512 Gene3D G3DSA:1.20.1260.30 1 167 7.7E-29 T 12-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily ALFP_1050 0349710d2168c3d40a85111dffef0f24 440 Gene3D G3DSA:3.40.50.620 4 334 1.1E-109 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_1050 0349710d2168c3d40a85111dffef0f24 440 Pfam PF00579 tRNA synthetases class I (W and Y) 3 286 4.6E-52 T 12-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_1050 0349710d2168c3d40a85111dffef0f24 440 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 1 334 1.4E-89 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 ALFP_1050 0349710d2168c3d40a85111dffef0f24 440 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 150 171 2.8E-19 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 ALFP_1050 0349710d2168c3d40a85111dffef0f24 440 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 204 214 2.8E-19 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 ALFP_1050 0349710d2168c3d40a85111dffef0f24 440 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 67 86 2.8E-19 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 ALFP_1050 0349710d2168c3d40a85111dffef0f24 440 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 15 31 2.8E-19 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 ALFP_1050 0349710d2168c3d40a85111dffef0f24 440 SUPERFAMILY SSF52374 4 334 2.82E-77 T 12-10-2018 ALFP_1050 0349710d2168c3d40a85111dffef0f24 440 SUPERFAMILY SSF160113 352 399 6.67E-9 T 12-10-2018 IPR036913 YegP-like superfamily ALFP_1050 0349710d2168c3d40a85111dffef0f24 440 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 2 335 34.808 T 12-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 ALFP_1050 0349710d2168c3d40a85111dffef0f24 440 Gene3D G3DSA:1.10.240.10 199 302 1.1E-109 T 12-10-2018 ALFP_3654 e607379421ce22fdc54fdbf8c2f84843 186 Gene3D G3DSA:1.20.1290.10 13 184 1.2E-38 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 ALFP_3654 e607379421ce22fdc54fdbf8c2f84843 186 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 58 104 5.3E-8 T 12-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 ALFP_3654 e607379421ce22fdc54fdbf8c2f84843 186 Pfam PF02627 Carboxymuconolactone decarboxylase family 43 119 1.4E-10 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 ALFP_3654 e607379421ce22fdc54fdbf8c2f84843 186 SUPERFAMILY SSF69118 1 183 5.76E-45 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 ALFP_3240 4e514ae0a9e3da07c905c5ff4c1d68e2 363 Pfam PF03330 Lytic transglycolase 99 189 1.3E-25 T 12-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain ALFP_3240 4e514ae0a9e3da07c905c5ff4c1d68e2 363 Gene3D G3DSA:3.30.70.1070 289 361 2.8E-10 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 ALFP_3240 4e514ae0a9e3da07c905c5ff4c1d68e2 363 SUPERFAMILY SSF50685 90 181 8.37E-10 T 12-10-2018 IPR036908 RlpA-like domain superfamily ALFP_3240 4e514ae0a9e3da07c905c5ff4c1d68e2 363 Pfam PF05036 Sporulation related domain 287 360 1.3E-12 T 12-10-2018 IPR007730 Sporulation-like domain GO:0042834 ALFP_3240 4e514ae0a9e3da07c905c5ff4c1d68e2 363 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 11 192 24.0 T 12-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 ALFP_3240 4e514ae0a9e3da07c905c5ff4c1d68e2 363 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 102 215 7.0E-41 T 12-10-2018 IPR012997 Rare lipoprotein A ALFP_3240 4e514ae0a9e3da07c905c5ff4c1d68e2 363 SUPERFAMILY SSF110997 285 360 6.28E-12 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 ALFP_3240 4e514ae0a9e3da07c905c5ff4c1d68e2 363 Gene3D G3DSA:2.40.40.10 99 193 2.0E-35 T 12-10-2018 IPR036908 RlpA-like domain superfamily ALFP_0265 6285b6e92882819ec2248f7df55b90f1 133 Pfam PF02036 SCP-2 sterol transfer family 12 98 7.6E-14 T 12-10-2018 IPR003033 SCP2 sterol-binding domain ALFP_0265 6285b6e92882819ec2248f7df55b90f1 133 SUPERFAMILY SSF55718 16 105 2.03E-17 T 12-10-2018 IPR036527 SCP2 sterol-binding domain superfamily ALFP_0155 cefb275827da43277bbd6bb153ee89a6 212 SUPERFAMILY SSF52016 4 205 1.81E-54 T 12-10-2018 ALFP_0155 cefb275827da43277bbd6bb153ee89a6 212 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 4 196 1.3E-61 T 12-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 ALFP_0155 cefb275827da43277bbd6bb153ee89a6 212 Gene3D G3DSA:3.20.19.10 1 184 9.5E-63 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 ALFP_0155 cefb275827da43277bbd6bb153ee89a6 212 Pfam PF00694 Aconitase C-terminal domain 13 133 7.8E-29 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 ALFP_0155 cefb275827da43277bbd6bb153ee89a6 212 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 2 210 35.12 T 12-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 ALFP_3253 6fbae25dce0851b4943643f9ba185cd3 277 SMART SM00855 32 218 8.4E-29 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 ALFP_3253 6fbae25dce0851b4943643f9ba185cd3 277 SUPERFAMILY SSF53254 30 274 1.24E-79 T 12-10-2018 IPR029033 Histidine phosphatase superfamily ALFP_3253 6fbae25dce0851b4943643f9ba185cd3 277 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 157 248 1.2E-7 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 ALFP_3253 6fbae25dce0851b4943643f9ba185cd3 277 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 33 150 7.9E-29 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 ALFP_3253 6fbae25dce0851b4943643f9ba185cd3 277 Gene3D G3DSA:3.40.50.1240 30 277 3.5E-91 T 12-10-2018 IPR029033 Histidine phosphatase superfamily ALFP_3253 6fbae25dce0851b4943643f9ba185cd3 277 PIRSF PIRSF000709 163 268 0.31 T 12-10-2018 ALFP_3253 6fbae25dce0851b4943643f9ba185cd3 277 PIRSF PIRSF000709 21 140 1.2E-8 T 12-10-2018 ALFP_3253 6fbae25dce0851b4943643f9ba185cd3 277 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 30 257 45.043 T 12-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 ALFP_3253 6fbae25dce0851b4943643f9ba185cd3 277 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 35 44 - T 12-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 ALFP_3253 6fbae25dce0851b4943643f9ba185cd3 277 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 32 275 3.0E-116 T 12-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 ALFP_2872 3b8fcaa566cdb8b78da4b1bc874b3002 301 Gene3D G3DSA:1.10.10.10 10 95 1.4E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2872 3b8fcaa566cdb8b78da4b1bc874b3002 301 SUPERFAMILY SSF53850 96 297 3.08E-38 T 12-10-2018 ALFP_2872 3b8fcaa566cdb8b78da4b1bc874b3002 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 1.4E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2872 3b8fcaa566cdb8b78da4b1bc874b3002 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 1.4E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2872 3b8fcaa566cdb8b78da4b1bc874b3002 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 1.4E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2872 3b8fcaa566cdb8b78da4b1bc874b3002 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 69 4.7E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2872 3b8fcaa566cdb8b78da4b1bc874b3002 301 Pfam PF03466 LysR substrate binding domain 94 294 2.2E-34 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_2872 3b8fcaa566cdb8b78da4b1bc874b3002 301 SUPERFAMILY SSF46785 8 86 4.32E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2872 3b8fcaa566cdb8b78da4b1bc874b3002 301 Gene3D G3DSA:3.40.190.10 106 290 2.7E-54 T 12-10-2018 ALFP_2872 3b8fcaa566cdb8b78da4b1bc874b3002 301 Gene3D G3DSA:3.40.190.10 166 263 2.7E-54 T 12-10-2018 ALFP_1002 fcd8e630b78ceab677aa427bb557894f 135 Gene3D G3DSA:3.10.129.10 3 135 2.3E-35 T 12-10-2018 ALFP_1002 fcd8e630b78ceab677aa427bb557894f 135 SUPERFAMILY SSF54637 14 134 6.84E-29 T 12-10-2018 IPR029069 HotDog domain superfamily ALFP_1002 fcd8e630b78ceab677aa427bb557894f 135 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 17 131 1.7E-17 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 ALFP_1002 fcd8e630b78ceab677aa427bb557894f 135 Pfam PF03061 Thioesterase superfamily 48 124 1.4E-13 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 ALFP_1136 f2db0f003cbcd4c8415ccac97fbecb5a 368 Pfam PF13439 Glycosyltransferase Family 4 15 164 2.0E-19 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 ALFP_1136 f2db0f003cbcd4c8415ccac97fbecb5a 368 Gene3D G3DSA:3.40.50.2000 170 339 2.5E-45 T 12-10-2018 ALFP_1136 f2db0f003cbcd4c8415ccac97fbecb5a 368 Pfam PF00534 Glycosyl transferases group 1 175 338 1.4E-32 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 ALFP_1136 f2db0f003cbcd4c8415ccac97fbecb5a 368 SUPERFAMILY SSF53756 6 359 7.27E-74 T 12-10-2018 ALFP_1136 f2db0f003cbcd4c8415ccac97fbecb5a 368 Gene3D G3DSA:3.40.50.2000 1 169 2.2E-18 T 12-10-2018 ALFP_2268 25848d03c91a21ef7d09fc95b0a3a6fa 215 SMART SM00419 154 202 1.3E-14 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 ALFP_2268 25848d03c91a21ef7d09fc95b0a3a6fa 215 Pfam PF13545 Crp-like helix-turn-helix domain 135 208 1.6E-18 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 ALFP_2268 25848d03c91a21ef7d09fc95b0a3a6fa 215 ProSitePatterns PS00042 Crp-type HTH domain signature. 162 185 - T 12-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 ALFP_2268 25848d03c91a21ef7d09fc95b0a3a6fa 215 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 176 191 1.2E-11 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 ALFP_2268 25848d03c91a21ef7d09fc95b0a3a6fa 215 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 160 176 1.2E-11 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 ALFP_2268 25848d03c91a21ef7d09fc95b0a3a6fa 215 SMART SM00100 1 115 1.2E-5 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain ALFP_2268 25848d03c91a21ef7d09fc95b0a3a6fa 215 SUPERFAMILY SSF46785 134 211 1.91E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2268 25848d03c91a21ef7d09fc95b0a3a6fa 215 Gene3D G3DSA:2.60.120.10 10 130 8.9E-34 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_2268 25848d03c91a21ef7d09fc95b0a3a6fa 215 SUPERFAMILY SSF51206 2 129 7.2E-26 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like ALFP_2268 25848d03c91a21ef7d09fc95b0a3a6fa 215 Pfam PF00027 Cyclic nucleotide-binding domain 17 100 3.1E-13 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain ALFP_2268 25848d03c91a21ef7d09fc95b0a3a6fa 215 Gene3D G3DSA:1.10.10.10 133 214 2.1E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1900 3b6f43e9b8d3018e666de3aa49cbcc1b 347 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 166 321 1.8E-46 T 12-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_1900 3b6f43e9b8d3018e666de3aa49cbcc1b 347 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 7 109 1.4E-32 T 12-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_1900 3b6f43e9b8d3018e666de3aa49cbcc1b 347 SUPERFAMILY SSF55347 161 323 4.76E-53 T 12-10-2018 ALFP_1900 3b6f43e9b8d3018e666de3aa49cbcc1b 347 Gene3D G3DSA:3.40.50.720 8 334 2.1E-119 T 12-10-2018 ALFP_1900 3b6f43e9b8d3018e666de3aa49cbcc1b 347 SUPERFAMILY SSF51735 6 188 2.96E-49 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1900 3b6f43e9b8d3018e666de3aa49cbcc1b 347 Gene3D G3DSA:3.30.360.10 160 324 2.1E-119 T 12-10-2018 ALFP_1900 3b6f43e9b8d3018e666de3aa49cbcc1b 347 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 155 173 3.9E-19 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_1900 3b6f43e9b8d3018e666de3aa49cbcc1b 347 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 182 198 3.9E-19 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_1900 3b6f43e9b8d3018e666de3aa49cbcc1b 347 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 239 256 3.9E-19 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_1900 3b6f43e9b8d3018e666de3aa49cbcc1b 347 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 116 129 3.9E-19 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_1900 3b6f43e9b8d3018e666de3aa49cbcc1b 347 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 278 293 3.9E-19 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_1900 3b6f43e9b8d3018e666de3aa49cbcc1b 347 PIRSF PIRSF000149 5 343 2.9E-125 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_1900 3b6f43e9b8d3018e666de3aa49cbcc1b 347 SMART SM00846 7 161 2.9E-66 T 12-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_1900 3b6f43e9b8d3018e666de3aa49cbcc1b 347 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 159 166 - T 12-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_3392 57b69a60d1b72d78815ac93038f7c08b 463 SUPERFAMILY SSF46785 3 72 4.65E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3392 57b69a60d1b72d78815ac93038f7c08b 463 SMART SM00345 10 69 8.7E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_3392 57b69a60d1b72d78815ac93038f7c08b 463 Gene3D G3DSA:1.10.10.10 6 103 4.5E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3392 57b69a60d1b72d78815ac93038f7c08b 463 Pfam PF00155 Aminotransferase class I and II 135 449 2.7E-35 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_3392 57b69a60d1b72d78815ac93038f7c08b 463 SUPERFAMILY SSF53383 94 452 5.71E-82 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_3392 57b69a60d1b72d78815ac93038f7c08b 463 Gene3D G3DSA:3.90.1150.10 118 448 7.9E-81 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_3392 57b69a60d1b72d78815ac93038f7c08b 463 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 69 7.9E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_3392 57b69a60d1b72d78815ac93038f7c08b 463 Gene3D G3DSA:3.40.640.10 140 357 7.9E-81 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2151 3697418f511d41b6d733a390af047a99 90 SUPERFAMILY SSF47729 1 90 3.83E-33 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 ALFP_2151 3697418f511d41b6d733a390af047a99 90 SMART SM00411 1 90 1.3E-43 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 ALFP_2151 3697418f511d41b6d733a390af047a99 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 9.5E-20 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 ALFP_2151 3697418f511d41b6d733a390af047a99 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 9.5E-20 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 ALFP_2151 3697418f511d41b6d733a390af047a99 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 9.5E-20 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 ALFP_2151 3697418f511d41b6d733a390af047a99 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 12-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 ALFP_2151 3697418f511d41b6d733a390af047a99 90 Gene3D G3DSA:4.10.520.10 1 90 5.9E-36 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 ALFP_2151 3697418f511d41b6d733a390af047a99 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 6.8E-34 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 ALFP_0396 7d5c0bc1a7a13e0f9fdb971867cde0a5 441 SUPERFAMILY SSF53383 8 436 5.34E-123 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_0396 7d5c0bc1a7a13e0f9fdb971867cde0a5 441 Gene3D G3DSA:3.90.1150.10 16 435 3.0E-152 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_0396 7d5c0bc1a7a13e0f9fdb971867cde0a5 441 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 274 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_0396 7d5c0bc1a7a13e0f9fdb971867cde0a5 441 Pfam PF00202 Aminotransferase class-III 9 435 4.0E-99 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_0396 7d5c0bc1a7a13e0f9fdb971867cde0a5 441 PIRSF PIRSF000521 115 435 3.3E-26 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_0396 7d5c0bc1a7a13e0f9fdb971867cde0a5 441 PIRSF PIRSF000521 3 124 7.6E-8 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_0396 7d5c0bc1a7a13e0f9fdb971867cde0a5 441 Gene3D G3DSA:3.40.640.10 48 326 3.0E-152 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2492 792746ca4ded55f2dbbda017449c6caa 283 Pfam PF00793 DAHP synthetase I family 8 274 1.1E-66 T 12-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 ALFP_2492 792746ca4ded55f2dbbda017449c6caa 283 SUPERFAMILY SSF51569 3 275 1.1E-99 T 12-10-2018 ALFP_2492 792746ca4ded55f2dbbda017449c6caa 283 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 8 276 52.413 T 12-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 ALFP_2492 792746ca4ded55f2dbbda017449c6caa 283 Gene3D G3DSA:3.20.20.70 4 281 2.0E-102 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_2492 792746ca4ded55f2dbbda017449c6caa 283 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 13 274 6.9E-121 T 12-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 ALFP_3256 c81d755012c973c7a1e5887bb52cb41b 164 Gene3D G3DSA:3.10.420.10 1 161 2.3E-52 T 12-10-2018 IPR035958 SecB-like superfamily ALFP_3256 c81d755012c973c7a1e5887bb52cb41b 164 Pfam PF02556 Preprotein translocase subunit SecB 12 151 1.5E-51 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 ALFP_3256 c81d755012c973c7a1e5887bb52cb41b 164 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 104 126 2.9E-27 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 ALFP_3256 c81d755012c973c7a1e5887bb52cb41b 164 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 80 100 2.9E-27 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 ALFP_3256 c81d755012c973c7a1e5887bb52cb41b 164 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 130 148 2.9E-27 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 ALFP_3256 c81d755012c973c7a1e5887bb52cb41b 164 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 20 37 2.9E-27 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 ALFP_3256 c81d755012c973c7a1e5887bb52cb41b 164 Hamap MF_00821 Protein-export protein SecB [secB]. 1 152 31.215 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 ALFP_3256 c81d755012c973c7a1e5887bb52cb41b 164 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 13 147 6.8E-44 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 ALFP_3256 c81d755012c973c7a1e5887bb52cb41b 164 SUPERFAMILY SSF54611 7 148 8.94E-47 T 12-10-2018 IPR035958 SecB-like superfamily ALFP_3521 50abdb2999c271b4e78db8d676412d52 291 SUPERFAMILY SSF81452 12 290 3.77E-77 T 12-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3521 50abdb2999c271b4e78db8d676412d52 291 Pfam PF00510 Cytochrome c oxidase subunit III 18 291 4.3E-57 T 12-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3521 50abdb2999c271b4e78db8d676412d52 291 Gene3D G3DSA:1.20.120.80 79 291 1.4E-66 T 12-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3521 50abdb2999c271b4e78db8d676412d52 291 Gene3D G3DSA:1.10.287.70 7 77 5.4E-13 T 12-10-2018 ALFP_1795 4dd3dbf26407bb062fa0260105b91272 1185 TIGRFAM TIGR02675 tape_meas_nterm: tape measure domain 173 233 3.2E-8 T 12-10-2018 IPR013491 Caudovirus, tape measure, N-terminal ALFP_1795 4dd3dbf26407bb062fa0260105b91272 1185 Pfam PF09718 Lambda phage tail tape-measure protein (Tape_meas_lam_C) 909 994 4.5E-11 T 12-10-2018 IPR006431 Bacteriophage lambda, GpH, tail tape measure, C-terminal ALFP_2873 6350de0ec68b1bbed202026aad7b7bf0 395 TIGRFAM TIGR00016 ackA: acetate kinase 2 390 1.3E-98 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 ALFP_2873 6350de0ec68b1bbed202026aad7b7bf0 395 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 205 222 - T 12-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 ALFP_2873 6350de0ec68b1bbed202026aad7b7bf0 395 PIRSF PIRSF000722 1 395 1.1E-129 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 ALFP_2873 6350de0ec68b1bbed202026aad7b7bf0 395 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 12-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 ALFP_2873 6350de0ec68b1bbed202026aad7b7bf0 395 SUPERFAMILY SSF53067 162 391 1.3E-71 T 12-10-2018 ALFP_2873 6350de0ec68b1bbed202026aad7b7bf0 395 SUPERFAMILY SSF53067 4 197 5.5E-50 T 12-10-2018 ALFP_2873 6350de0ec68b1bbed202026aad7b7bf0 395 Gene3D G3DSA:3.30.420.40 1 196 2.1E-52 T 12-10-2018 ALFP_2873 6350de0ec68b1bbed202026aad7b7bf0 395 Gene3D G3DSA:3.30.420.40 201 395 8.2E-69 T 12-10-2018 ALFP_2873 6350de0ec68b1bbed202026aad7b7bf0 395 PRINTS PR00471 Acetate kinase family signature 176 189 1.8E-37 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 ALFP_2873 6350de0ec68b1bbed202026aad7b7bf0 395 PRINTS PR00471 Acetate kinase family signature 372 384 1.8E-37 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 ALFP_2873 6350de0ec68b1bbed202026aad7b7bf0 395 PRINTS PR00471 Acetate kinase family signature 298 311 1.8E-37 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 ALFP_2873 6350de0ec68b1bbed202026aad7b7bf0 395 PRINTS PR00471 Acetate kinase family signature 205 226 1.8E-37 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 ALFP_2873 6350de0ec68b1bbed202026aad7b7bf0 395 PRINTS PR00471 Acetate kinase family signature 320 336 1.8E-37 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 ALFP_2873 6350de0ec68b1bbed202026aad7b7bf0 395 PRINTS PR00471 Acetate kinase family signature 5 16 1.8E-37 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 ALFP_2873 6350de0ec68b1bbed202026aad7b7bf0 395 Pfam PF00871 Acetokinase family 5 385 3.2E-95 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 ALFP_2873 6350de0ec68b1bbed202026aad7b7bf0 395 Hamap MF_00020 Acetate kinase [ackA]. 1 394 140.553 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 ALFP_3028 7b4851e7ad4ae8b3331ae71449a11674 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 219 4.0E-22 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_3028 7b4851e7ad4ae8b3331ae71449a11674 222 Gene3D G3DSA:1.10.10.10 126 222 8.8E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3028 7b4851e7ad4ae8b3331ae71449a11674 222 SUPERFAMILY SSF52172 1 178 1.66E-37 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_3028 7b4851e7ad4ae8b3331ae71449a11674 222 SMART SM00448 1 115 1.0E-35 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_3028 7b4851e7ad4ae8b3331ae71449a11674 222 SMART SM00862 148 219 2.2E-24 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_3028 7b4851e7ad4ae8b3331ae71449a11674 222 Gene3D G3DSA:3.40.50.2300 1 125 5.9E-36 T 12-10-2018 ALFP_3028 7b4851e7ad4ae8b3331ae71449a11674 222 Pfam PF00072 Response regulator receiver domain 3 115 3.3E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_0556 002c6812815fdd24e9405d1c95fd123e 257 Gene3D G3DSA:3.40.50.720 1 257 9.8E-66 T 12-10-2018 ALFP_0556 002c6812815fdd24e9405d1c95fd123e 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 8.9E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0556 002c6812815fdd24e9405d1c95fd123e 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 8.9E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0556 002c6812815fdd24e9405d1c95fd123e 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 8.9E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0556 002c6812815fdd24e9405d1c95fd123e 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 8.9E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0556 002c6812815fdd24e9405d1c95fd123e 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 255 6.8E-40 T 12-10-2018 ALFP_0556 002c6812815fdd24e9405d1c95fd123e 257 SUPERFAMILY SSF51735 5 256 6.44E-50 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3027 7700957a343f317e5001e04b37f20357 244 SUPERFAMILY SSF52218 11 231 3.77E-67 T 12-10-2018 IPR029039 Flavoprotein-like superfamily ALFP_3027 7700957a343f317e5001e04b37f20357 244 TIGRFAM TIGR02690 resist_ArsH: arsenical resistance protein ArsH 13 230 6.6E-124 T 12-10-2018 IPR014063 Arsenate resistance ArsH ALFP_3027 7700957a343f317e5001e04b37f20357 244 Pfam PF03358 NADPH-dependent FMN reductase 38 181 2.7E-29 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 ALFP_3027 7700957a343f317e5001e04b37f20357 244 Gene3D G3DSA:3.40.50.360 6 244 6.4E-79 T 12-10-2018 IPR029039 Flavoprotein-like superfamily ALFP_1082 00eefb339039687a64a74d2b9abb7893 233 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 226 4.0E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_1082 00eefb339039687a64a74d2b9abb7893 233 SUPERFAMILY SSF161098 17 213 1.24E-38 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1082 00eefb339039687a64a74d2b9abb7893 233 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 19 121 2.0E-15 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 ALFP_1082 00eefb339039687a64a74d2b9abb7893 233 Gene3D G3DSA:1.10.3720.10 9 228 3.0E-46 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2905 447d8169092fb158945a618b748b9201 426 PIRSF PIRSF001434 1 424 2.2E-134 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 ALFP_2905 447d8169092fb158945a618b748b9201 426 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 421 3.6E-147 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 ALFP_2905 447d8169092fb158945a618b748b9201 426 SUPERFAMILY SSF53383 1 421 7.5E-136 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2905 447d8169092fb158945a618b748b9201 426 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 196 210 - T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 ALFP_2905 447d8169092fb158945a618b748b9201 426 Gene3D G3DSA:3.40.640.10 1 285 6.2E-104 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2905 447d8169092fb158945a618b748b9201 426 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 2 421 2.6E-204 T 12-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 ALFP_2905 447d8169092fb158945a618b748b9201 426 Gene3D G3DSA:3.90.1150.10 289 426 2.2E-54 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_1738 14cc186581592775ee01a2c32cea195c 414 Pfam PF01546 Peptidase family M20/M25/M40 83 409 9.6E-32 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 ALFP_1738 14cc186581592775ee01a2c32cea195c 414 Gene3D G3DSA:3.30.70.360 216 330 4.3E-145 T 12-10-2018 ALFP_1738 14cc186581592775ee01a2c32cea195c 414 SUPERFAMILY SSF55031 216 331 1.47E-25 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain ALFP_1738 14cc186581592775ee01a2c32cea195c 414 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 14 410 5.0E-130 T 12-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 ALFP_1738 14cc186581592775ee01a2c32cea195c 414 Pfam PF07687 Peptidase dimerisation domain 213 315 5.3E-6 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain ALFP_1738 14cc186581592775ee01a2c32cea195c 414 Gene3D G3DSA:3.40.630.10 23 405 4.3E-145 T 12-10-2018 ALFP_1738 14cc186581592775ee01a2c32cea195c 414 PIRSF PIRSF001235 10 414 7.8E-132 T 12-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 ALFP_1738 14cc186581592775ee01a2c32cea195c 414 SUPERFAMILY SSF53187 2 412 9.71E-94 T 12-10-2018 ALFP_1225 b644177d8b495b1695da7a98ac8bb851 149 PIRSF PIRSF019404 1 148 4.1E-42 T 12-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 ALFP_1225 b644177d8b495b1695da7a98ac8bb851 149 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 6 144 4.1E-30 T 12-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 ALFP_1225 b644177d8b495b1695da7a98ac8bb851 149 Pfam PF02050 Flagellar FliJ protein 19 142 3.2E-33 T 12-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 ALFP_1225 b644177d8b495b1695da7a98ac8bb851 149 PRINTS PR01004 Flagellar FliJ protein signature 63 84 1.9E-15 T 12-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 ALFP_1225 b644177d8b495b1695da7a98ac8bb851 149 PRINTS PR01004 Flagellar FliJ protein signature 44 61 1.9E-15 T 12-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 ALFP_1225 b644177d8b495b1695da7a98ac8bb851 149 PRINTS PR01004 Flagellar FliJ protein signature 126 146 1.9E-15 T 12-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 ALFP_1225 b644177d8b495b1695da7a98ac8bb851 149 PRINTS PR01004 Flagellar FliJ protein signature 27 43 1.9E-15 T 12-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 ALFP_1225 b644177d8b495b1695da7a98ac8bb851 149 PRINTS PR01004 Flagellar FliJ protein signature 4 26 1.9E-15 T 12-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 ALFP_1225 b644177d8b495b1695da7a98ac8bb851 149 PRINTS PR01004 Flagellar FliJ protein signature 108 126 1.9E-15 T 12-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 ALFP_1711 3e0841c002315222d63481fb40c73369 107 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 6 97 1.2E-40 T 12-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 ALFP_1711 3e0841c002315222d63481fb40c73369 107 SMART SM00411 7 96 1.8E-39 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 ALFP_1711 3e0841c002315222d63481fb40c73369 107 Pfam PF00216 Bacterial DNA-binding protein 7 95 5.4E-29 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 ALFP_1711 3e0841c002315222d63481fb40c73369 107 Gene3D G3DSA:4.10.520.10 5 100 5.5E-34 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 ALFP_1711 3e0841c002315222d63481fb40c73369 107 SUPERFAMILY SSF47729 7 97 2.5E-31 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 ALFP_1711 3e0841c002315222d63481fb40c73369 107 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 5 101 29.246 T 12-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 ALFP_1711 3e0841c002315222d63481fb40c73369 107 PRINTS PR01727 Prokaryotic integration host factor signature 80 94 9.4E-13 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 ALFP_1711 3e0841c002315222d63481fb40c73369 107 PRINTS PR01727 Prokaryotic integration host factor signature 46 61 9.4E-13 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 ALFP_1711 3e0841c002315222d63481fb40c73369 107 PRINTS PR01727 Prokaryotic integration host factor signature 64 77 9.4E-13 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 ALFP_1711 3e0841c002315222d63481fb40c73369 107 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 52 71 - T 12-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 ALFP_2000 9eb87c1c8f4aca7b55dfd15337d36370 264 SUPERFAMILY SSF52540 2 233 1.7E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2000 9eb87c1c8f4aca7b55dfd15337d36370 264 SMART SM00382 31 226 3.5E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2000 9eb87c1c8f4aca7b55dfd15337d36370 264 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_2000 9eb87c1c8f4aca7b55dfd15337d36370 264 Gene3D G3DSA:3.40.50.300 1 257 6.4E-57 T 12-10-2018 ALFP_2000 9eb87c1c8f4aca7b55dfd15337d36370 264 Pfam PF00005 ABC transporter 22 177 2.4E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2555 2c902fe6d001d8b5bd94803108d0dfb8 597 Pfam PF00005 ABC transporter 348 505 8.1E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2555 2c902fe6d001d8b5bd94803108d0dfb8 597 Gene3D G3DSA:3.40.50.300 328 577 4.7E-61 T 12-10-2018 ALFP_2555 2c902fe6d001d8b5bd94803108d0dfb8 597 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 555 576 6.3E-9 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal ALFP_2555 2c902fe6d001d8b5bd94803108d0dfb8 597 SMART SM00382 356 554 1.8E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2555 2c902fe6d001d8b5bd94803108d0dfb8 597 SUPERFAMILY SSF52540 331 575 5.43E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2555 2c902fe6d001d8b5bd94803108d0dfb8 597 Pfam PF02653 Branched-chain amino acid transport system / permease component 17 284 9.3E-36 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_2675 15434a1de3529821da12adf330cdf2c1 393 Gene3D G3DSA:2.40.50.100 88 151 1.1E-13 T 12-10-2018 ALFP_2675 15434a1de3529821da12adf330cdf2c1 393 SUPERFAMILY SSF111369 90 169 6.54E-12 T 12-10-2018 ALFP_2675 15434a1de3529821da12adf330cdf2c1 393 Gene3D G3DSA:1.10.287.470 152 249 4.4E-5 T 12-10-2018 ALFP_2675 15434a1de3529821da12adf330cdf2c1 393 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 98 118 7.3E-8 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 ALFP_2675 15434a1de3529821da12adf330cdf2c1 393 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 369 384 7.3E-8 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 ALFP_2675 15434a1de3529821da12adf330cdf2c1 393 Gene3D G3DSA:2.40.30.170 267 391 2.6E-35 T 12-10-2018 ALFP_2675 15434a1de3529821da12adf330cdf2c1 393 SUPERFAMILY SSF111369 207 303 3.14E-11 T 12-10-2018 ALFP_2675 15434a1de3529821da12adf330cdf2c1 393 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 85 329 1.7E-17 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain ALFP_1088 6c64bf2d4314135531ce37bdb1d2a810 149 SUPERFAMILY SSF46785 4 141 2.21E-29 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1088 6c64bf2d4314135531ce37bdb1d2a810 149 Pfam PF12802 MarR family 35 92 6.1E-14 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1088 6c64bf2d4314135531ce37bdb1d2a810 149 ProSitePatterns PS01117 MarR-type HTH domain signature. 67 101 - T 12-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site ALFP_1088 6c64bf2d4314135531ce37bdb1d2a810 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 2.9E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1088 6c64bf2d4314135531ce37bdb1d2a810 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 52 68 2.9E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1088 6c64bf2d4314135531ce37bdb1d2a810 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 2.9E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1088 6c64bf2d4314135531ce37bdb1d2a810 149 Gene3D G3DSA:1.10.10.10 1 146 6.2E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1088 6c64bf2d4314135531ce37bdb1d2a810 149 SMART SM00347 25 129 4.5E-11 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_3659 ab1dd366f3332ab05aef478733f03c16 226 Pfam PF00189 Ribosomal protein S3, C-terminal domain 89 171 1.2E-40 T 12-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3659 ab1dd366f3332ab05aef478733f03c16 226 SUPERFAMILY SSF54821 77 175 3.01E-40 T 12-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3659 ab1dd366f3332ab05aef478733f03c16 226 SUPERFAMILY SSF54814 3 85 4.45E-25 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 ALFP_3659 ab1dd366f3332ab05aef478733f03c16 226 Gene3D G3DSA:3.30.300.20 1 76 2.8E-20 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta ALFP_3659 ab1dd366f3332ab05aef478733f03c16 226 ProSitePatterns PS00548 Ribosomal protein S3 signature. 132 166 - T 12-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3659 ab1dd366f3332ab05aef478733f03c16 226 Gene3D G3DSA:3.30.1140.32 77 177 1.2E-44 T 12-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3659 ab1dd366f3332ab05aef478733f03c16 226 SMART SM00322 29 94 1.6E-7 T 12-10-2018 IPR004087 K Homology domain GO:0003676 ALFP_3659 ab1dd366f3332ab05aef478733f03c16 226 Pfam PF07650 KH domain 8 79 5.5E-20 T 12-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3659 ab1dd366f3332ab05aef478733f03c16 226 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 175 28.142 T 12-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 ALFP_3659 ab1dd366f3332ab05aef478733f03c16 226 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 2 178 3.4E-76 T 12-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 ALFP_3264 47336570c8c95c169e513870d7a4e6d0 449 SUPERFAMILY SSF47384 211 287 1.08E-10 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_3264 47336570c8c95c169e513870d7a4e6d0 449 SMART SM00304 174 227 4.2E-5 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 ALFP_3264 47336570c8c95c169e513870d7a4e6d0 449 Pfam PF00512 His Kinase A (phospho-acceptor) domain 231 287 1.5E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_3264 47336570c8c95c169e513870d7a4e6d0 449 SUPERFAMILY SSF55874 296 437 1.83E-21 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_3264 47336570c8c95c169e513870d7a4e6d0 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 418 1.5E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3264 47336570c8c95c169e513870d7a4e6d0 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 397 1.5E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3264 47336570c8c95c169e513870d7a4e6d0 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 369 383 1.5E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3264 47336570c8c95c169e513870d7a4e6d0 449 SMART SM00387 333 438 7.0E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_3264 47336570c8c95c169e513870d7a4e6d0 449 SMART SM00388 228 288 2.8E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_3264 47336570c8c95c169e513870d7a4e6d0 449 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 335 437 5.0E-12 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_3264 47336570c8c95c169e513870d7a4e6d0 449 Gene3D G3DSA:3.30.565.10 293 442 4.3E-21 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_3264 47336570c8c95c169e513870d7a4e6d0 449 Gene3D G3DSA:1.10.287.130 178 290 1.8E-18 T 12-10-2018 ALFP_1706 a7a01f32cb275f1fa1214b4c84e10d7c 506 SUPERFAMILY SSF54211 11 181 9.1E-26 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_1706 a7a01f32cb275f1fa1214b4c84e10d7c 506 SUPERFAMILY SSF52540 204 501 1.01E-38 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1706 a7a01f32cb275f1fa1214b4c84e10d7c 506 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 8 502 1.4E-146 T 12-10-2018 IPR004482 Mg chelatase-related protein ALFP_1706 a7a01f32cb275f1fa1214b4c84e10d7c 506 Gene3D G3DSA:3.40.50.300 197 504 1.4E-51 T 12-10-2018 ALFP_1706 a7a01f32cb275f1fa1214b4c84e10d7c 506 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 411 502 3.6E-22 T 12-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain ALFP_1706 a7a01f32cb275f1fa1214b4c84e10d7c 506 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 145 1.5E-34 T 12-10-2018 ALFP_1706 a7a01f32cb275f1fa1214b4c84e10d7c 506 Pfam PF01078 Magnesium chelatase, subunit ChlI 204 403 7.9E-87 T 12-10-2018 IPR000523 Magnesium chelatase ChlI domain ALFP_1706 a7a01f32cb275f1fa1214b4c84e10d7c 506 SMART SM00382 223 394 4.2E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0489 85c9741c63c8786d095d7ec58a3536b9 588 SUPERFAMILY SSF52540 326 569 2.25E-83 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0489 85c9741c63c8786d095d7ec58a3536b9 588 Gene3D G3DSA:1.20.1560.10 4 322 1.2E-29 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_0489 85c9741c63c8786d095d7ec58a3536b9 588 Gene3D G3DSA:3.40.50.300 328 581 2.5E-85 T 12-10-2018 ALFP_0489 85c9741c63c8786d095d7ec58a3536b9 588 SMART SM00382 361 547 2.4E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0489 85c9741c63c8786d095d7ec58a3536b9 588 Pfam PF00664 ABC transporter transmembrane region 54 283 8.4E-18 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 ALFP_0489 85c9741c63c8786d095d7ec58a3536b9 588 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0489 85c9741c63c8786d095d7ec58a3536b9 588 SUPERFAMILY SSF90123 4 327 3.92E-37 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_0489 85c9741c63c8786d095d7ec58a3536b9 588 Pfam PF00005 ABC transporter 352 501 3.1E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0493 7eed3bc723ef50c047cbc5ac96cd83d2 379 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 12-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 ALFP_0493 7eed3bc723ef50c047cbc5ac96cd83d2 379 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 379 72.104 T 12-10-2018 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 ALFP_0493 7eed3bc723ef50c047cbc5ac96cd83d2 379 SUPERFAMILY SSF51395 5 376 7.33E-97 T 12-10-2018 ALFP_0493 7eed3bc723ef50c047cbc5ac96cd83d2 379 Pfam PF01070 FMN-dependent dehydrogenase 13 375 1.5E-125 T 12-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 ALFP_0493 7eed3bc723ef50c047cbc5ac96cd83d2 379 Gene3D G3DSA:3.20.20.70 2 379 2.4E-125 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0493 7eed3bc723ef50c047cbc5ac96cd83d2 379 PIRSF PIRSF000138 1 379 4.3E-121 T 12-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 ALFP_0329 327019756f62e6cb87d9d91e40edbbb2 256 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 95 252 7.8E-8 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 ALFP_0329 327019756f62e6cb87d9d91e40edbbb2 256 Gene3D G3DSA:3.90.850.10 7 254 2.3E-56 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 ALFP_0329 327019756f62e6cb87d9d91e40edbbb2 256 SUPERFAMILY SSF56529 11 253 2.75E-37 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 ALFP_1723 40a46715e0a04b02376f6c7d765c4e8a 170 Gene3D G3DSA:1.10.260.40 32 95 2.3E-9 T 12-10-2018 ALFP_1723 40a46715e0a04b02376f6c7d765c4e8a 170 SUPERFAMILY SSF47413 29 93 7.93E-9 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_0391 55025aa6e816ae9f866c010446eb80ff 244 Gene3D G3DSA:2.60.120.620 96 231 6.4E-8 T 12-10-2018 ALFP_0391 55025aa6e816ae9f866c010446eb80ff 244 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 120 231 2.6E-10 T 12-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 ALFP_0711 093c1f10744678edce4c043705a0d747 354 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 8 349 6.2E-132 T 12-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 ALFP_0711 093c1f10744678edce4c043705a0d747 354 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 350 45.265 T 12-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 ALFP_0711 093c1f10744678edce4c043705a0d747 354 Gene3D G3DSA:3.40.1780.10 20 349 2.5E-113 T 12-10-2018 ALFP_0711 093c1f10744678edce4c043705a0d747 354 Pfam PF02547 Queuosine biosynthesis protein 10 349 1.4E-131 T 12-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 ALFP_0711 093c1f10744678edce4c043705a0d747 354 SUPERFAMILY SSF111337 8 349 9.02E-130 T 12-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 ALFP_0711 093c1f10744678edce4c043705a0d747 354 Gene3D G3DSA:2.40.10.240 69 165 2.5E-113 T 12-10-2018 ALFP_0492 2d281a11bd4cffc122c80ffe7dbfce91 573 Gene3D G3DSA:3.30.1370.20 432 516 1.6E-38 T 12-10-2018 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 ALFP_0492 2d281a11bd4cffc122c80ffe7dbfce91 573 SUPERFAMILY SSF55103 275 564 1.16E-105 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 ALFP_0492 2d281a11bd4cffc122c80ffe7dbfce91 573 Gene3D G3DSA:3.30.70.610 360 431 1.3E-16 T 12-10-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 ALFP_0492 2d281a11bd4cffc122c80ffe7dbfce91 573 Gene3D G3DSA:3.30.70.610 268 346 2.8E-15 T 12-10-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 ALFP_0492 2d281a11bd4cffc122c80ffe7dbfce91 573 Pfam PF09330 D-lactate dehydrogenase, membrane binding 276 564 9.2E-134 T 12-10-2018 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 ALFP_0492 2d281a11bd4cffc122c80ffe7dbfce91 573 PIRSF PIRSF000101 2 566 4.3E-273 T 12-10-2018 IPR012256 D-lactate dehydrogenase GO:0005887|GO:0016901|GO:0019516|GO:0022904|GO:0050660 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 ALFP_0492 2d281a11bd4cffc122c80ffe7dbfce91 573 Pfam PF01565 FAD binding domain 45 183 8.8E-8 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 ALFP_0492 2d281a11bd4cffc122c80ffe7dbfce91 573 Gene3D G3DSA:3.30.43.10 1 99 6.0E-13 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 ALFP_0492 2d281a11bd4cffc122c80ffe7dbfce91 573 Hamap MF_02092 Quinone-dependent D-lactate dehydrogenase [dld]. 8 565 57.689 T 12-10-2018 IPR012256 D-lactate dehydrogenase GO:0005887|GO:0016901|GO:0019516|GO:0022904|GO:0050660 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 ALFP_0492 2d281a11bd4cffc122c80ffe7dbfce91 573 SUPERFAMILY SSF56176 9 271 2.34E-71 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 ALFP_0492 2d281a11bd4cffc122c80ffe7dbfce91 573 Gene3D G3DSA:3.30.465.10 104 267 1.5E-74 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 ALFP_0538 1e4b630ffeca8b41e229356b2da61cbe 226 Gene3D G3DSA:2.60.120.620 1 178 2.1E-43 T 12-10-2018 ALFP_0538 1e4b630ffeca8b41e229356b2da61cbe 226 Hamap MF_00657 PKHD-type hydroxylase YbiX [ybiX]. 1 226 44.78 T 12-10-2018 IPR023550 PKHD-type hydroxylase GO:0016706|GO:0055114 ALFP_0538 1e4b630ffeca8b41e229356b2da61cbe 226 SMART SM00702 1 177 3.8E-23 T 12-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 ALFP_0538 1e4b630ffeca8b41e229356b2da61cbe 226 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 84 176 1.5E-14 T 12-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 ALFP_0538 1e4b630ffeca8b41e229356b2da61cbe 226 Gene3D G3DSA:4.10.860.20 180 226 3.3E-19 T 12-10-2018 ALFP_0538 1e4b630ffeca8b41e229356b2da61cbe 226 SUPERFAMILY SSF51197 4 177 2.61E-6 T 12-10-2018 ALFP_3445 b488dd675f894bca7b7a6e620a1f60c6 438 PIRSF PIRSF038885 1 314 5.6E-127 T 12-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 ALFP_3445 b488dd675f894bca7b7a6e620a1f60c6 438 PIRSF PIRSF038885 317 437 7.2E-25 T 12-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 ALFP_3445 b488dd675f894bca7b7a6e620a1f60c6 438 SUPERFAMILY SSF81648 331 423 8.24E-20 T 12-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 ALFP_3445 b488dd675f894bca7b7a6e620a1f60c6 438 SUPERFAMILY SSF81342 3 264 3.45E-97 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 ALFP_3445 b488dd675f894bca7b7a6e620a1f60c6 438 Pfam PF00033 Cytochrome b/b6/petB 7 195 1.0E-67 T 12-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 ALFP_3445 b488dd675f894bca7b7a6e620a1f60c6 438 SUPERFAMILY SSF81648 266 308 1.4E-8 T 12-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 ALFP_3445 b488dd675f894bca7b7a6e620a1f60c6 438 Gene3D G3DSA:1.20.810.10 313 436 9.1E-25 T 12-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 ALFP_3445 b488dd675f894bca7b7a6e620a1f60c6 438 Gene3D G3DSA:1.20.810.10 1 312 1.3E-125 T 12-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 ALFP_3445 b488dd675f894bca7b7a6e620a1f60c6 438 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 262 305 2.6E-13 T 12-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 ALFP_3445 b488dd675f894bca7b7a6e620a1f60c6 438 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 331 410 7.4E-29 T 12-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 ALFP_2990 7b674049025fec212827fc19b62ec0d5 158 SUPERFAMILY SSF55826 5 151 1.23E-39 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 ALFP_2990 7b674049025fec212827fc19b62ec0d5 158 Gene3D G3DSA:3.90.960.10 1 153 2.1E-42 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 ALFP_2990 7b674049025fec212827fc19b62ec0d5 158 Pfam PF04073 Aminoacyl-tRNA editing domain 23 141 1.5E-24 T 12-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 ALFP_1403 7ef7615ce5803767224a2221be192401 254 SUPERFAMILY SSF51735 3 249 9.94E-59 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1403 7ef7615ce5803767224a2221be192401 254 Gene3D G3DSA:3.40.50.720 1 254 8.2E-74 T 12-10-2018 ALFP_1403 7ef7615ce5803767224a2221be192401 254 Pfam PF00106 short chain dehydrogenase 6 198 2.8E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1403 7ef7615ce5803767224a2221be192401 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 2.3E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1403 7ef7615ce5803767224a2221be192401 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 2.3E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1403 7ef7615ce5803767224a2221be192401 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 2.3E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1403 7ef7615ce5803767224a2221be192401 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.4E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1403 7ef7615ce5803767224a2221be192401 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.4E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1403 7ef7615ce5803767224a2221be192401 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 2.4E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1403 7ef7615ce5803767224a2221be192401 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 2.4E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1403 7ef7615ce5803767224a2221be192401 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 2.4E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1403 7ef7615ce5803767224a2221be192401 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 2.4E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1403 7ef7615ce5803767224a2221be192401 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_0707 dc2c472f926279824c928e9d725d5b16 312 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 10 294 28.085 T 12-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 ALFP_0707 dc2c472f926279824c928e9d725d5b16 312 Pfam PF07549 SecD/SecF GG Motif 32 59 6.8E-9 T 12-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site ALFP_0707 dc2c472f926279824c928e9d725d5b16 312 PRINTS PR01755 Bacterial translocase SecF protein signature 151 165 1.0E-24 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial ALFP_0707 dc2c472f926279824c928e9d725d5b16 312 PRINTS PR01755 Bacterial translocase SecF protein signature 231 246 1.0E-24 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial ALFP_0707 dc2c472f926279824c928e9d725d5b16 312 PRINTS PR01755 Bacterial translocase SecF protein signature 37 52 1.0E-24 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial ALFP_0707 dc2c472f926279824c928e9d725d5b16 312 PRINTS PR01755 Bacterial translocase SecF protein signature 199 217 1.0E-24 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial ALFP_0707 dc2c472f926279824c928e9d725d5b16 312 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 38 283 8.6E-76 T 12-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 ALFP_0707 dc2c472f926279824c928e9d725d5b16 312 Gene3D G3DSA:1.20.1640.10 102 299 4.3E-13 T 12-10-2018 ALFP_0707 dc2c472f926279824c928e9d725d5b16 312 SUPERFAMILY SSF82866 74 294 3.53E-38 T 12-10-2018 ALFP_0707 dc2c472f926279824c928e9d725d5b16 312 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 94 280 1.7E-49 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial ALFP_0707 dc2c472f926279824c928e9d725d5b16 312 Pfam PF02355 Protein export membrane protein 107 291 3.5E-63 T 12-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial ALFP_1037 431fe953d8b6407b65889c478aea39ad 127 PIRSF PIRSF000169 8 127 1.3E-36 T 12-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 ALFP_1037 431fe953d8b6407b65889c478aea39ad 127 SUPERFAMILY SSF81343 11 127 1.16E-25 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1037 431fe953d8b6407b65889c478aea39ad 127 Gene3D G3DSA:1.20.1300.10 10 127 8.9E-27 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1037 431fe953d8b6407b65889c478aea39ad 127 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 16 125 2.7E-33 T 12-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 ALFP_1037 431fe953d8b6407b65889c478aea39ad 127 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 4 118 9.4E-13 T 12-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 304 322 9.4E-30 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 78 95 9.4E-30 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 167 176 9.4E-30 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 386 408 9.4E-30 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 Gene3D G3DSA:3.20.20.10 37 281 4.0E-145 T 12-10-2018 IPR029066 PLP-binding barrel ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 52 285 1.6E-67 T 12-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 SUPERFAMILY SSF51419 29 288 3.79E-77 T 12-10-2018 IPR029066 PLP-binding barrel ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 Gene3D G3DSA:2.40.37.10 17 416 4.0E-145 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 SUPERFAMILY SSF50621 263 420 2.72E-51 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 80 92 2.9E-24 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 60 78 2.9E-24 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 193 206 2.9E-24 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 276 295 2.9E-24 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 376 389 2.9E-24 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 231 244 - T 12-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 33 376 3.0E-25 T 12-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 18 419 41.15 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 ALFP_3600 6cf464332f6b4cb5d9f777286eec9fde 422 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 10 418 6.4E-153 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 ALFP_1713 a7b0cdcc19fdd4b8eca08fb39e522926 270 Pfam PF04305 Protein of unknown function (DUF455) 14 253 3.9E-88 T 12-10-2018 IPR007402 Protein of unknown function DUF455 ALFP_1713 a7b0cdcc19fdd4b8eca08fb39e522926 270 SUPERFAMILY SSF47240 70 217 1.42E-18 T 12-10-2018 IPR009078 Ferritin-like superfamily ALFP_1713 a7b0cdcc19fdd4b8eca08fb39e522926 270 PIRSF PIRSF012318 1 267 2.2E-88 T 12-10-2018 IPR011197 Uncharacterised conserved protein UCP012318 ALFP_1999 bdaeac5a0309965c5fccaeeb775cab60 421 SUPERFAMILY SSF111369 64 312 7.45E-78 T 12-10-2018 ALFP_1999 bdaeac5a0309965c5fccaeeb775cab60 421 Gene3D G3DSA:1.10.287.470 110 183 4.7E-78 T 12-10-2018 ALFP_1999 bdaeac5a0309965c5fccaeeb775cab60 421 Gene3D G3DSA:2.40.50.100 75 219 4.7E-78 T 12-10-2018 ALFP_1999 bdaeac5a0309965c5fccaeeb775cab60 421 Pfam PF13533 Biotin-lipoyl like 77 124 5.8E-12 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain ALFP_1999 bdaeac5a0309965c5fccaeeb775cab60 421 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 51 385 1.8E-85 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 ALFP_1999 bdaeac5a0309965c5fccaeeb775cab60 421 Gene3D G3DSA:2.40.30.170 69 295 4.7E-78 T 12-10-2018 ALFP_1999 bdaeac5a0309965c5fccaeeb775cab60 421 Gene3D G3DSA:2.40.420.20 296 388 1.3E-24 T 12-10-2018 ALFP_1709 58dd8f6d48a0784995e4078cf6e94c5f 340 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 40 339 1.3E-95 T 12-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 ALFP_1709 58dd8f6d48a0784995e4078cf6e94c5f 340 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 21 88 1.9E-20 T 12-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 ALFP_1709 58dd8f6d48a0784995e4078cf6e94c5f 340 SUPERFAMILY SSF46589 17 100 2.09E-18 T 12-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 ALFP_1709 58dd8f6d48a0784995e4078cf6e94c5f 340 Pfam PF01409 tRNA synthetases class II core domain (F) 93 338 4.0E-92 T 12-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 ALFP_1709 58dd8f6d48a0784995e4078cf6e94c5f 340 Gene3D G3DSA:3.30.930.10 9 340 1.7E-112 T 12-10-2018 ALFP_1709 58dd8f6d48a0784995e4078cf6e94c5f 340 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 9 338 45.211 T 12-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 ALFP_1709 58dd8f6d48a0784995e4078cf6e94c5f 340 SUPERFAMILY SSF55681 93 339 9.95E-73 T 12-10-2018 ALFP_3237 ffc89cf6a48415a45bc24874d822f650 169 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 55 71 - T 12-10-2018 IPR002178 PTS EIIA type-2 domain ALFP_3237 ffc89cf6a48415a45bc24874d822f650 169 SUPERFAMILY SSF55804 4 150 2.88E-37 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 ALFP_3237 ffc89cf6a48415a45bc24874d822f650 169 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 14 151 3.6E-32 T 12-10-2018 IPR002178 PTS EIIA type-2 domain ALFP_3237 ffc89cf6a48415a45bc24874d822f650 169 Gene3D G3DSA:3.40.930.10 2 153 3.3E-49 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 ALFP_1722 7e174d1eb00e79cd45fe2c95849e0655 186 Pfam PF01883 Iron-sulfur cluster assembly protein 88 162 5.6E-14 T 12-10-2018 IPR002744 MIP18 family-like ALFP_1722 7e174d1eb00e79cd45fe2c95849e0655 186 Gene3D G3DSA:3.30.300.130 79 185 8.0E-34 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily ALFP_1722 7e174d1eb00e79cd45fe2c95849e0655 186 SUPERFAMILY SSF117916 84 185 4.9E-26 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily ALFP_1722 7e174d1eb00e79cd45fe2c95849e0655 186 TIGRFAM TIGR03406 FeS_long_SufT: probable FeS assembly SUF system protein SufT 9 185 2.3E-65 T 12-10-2018 IPR017776 FeS assembly SUF system protein SufT, putative ALFP_0906 dbfc4b43ebcb32ddd7340f03a033fbfd 259 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0906 dbfc4b43ebcb32ddd7340f03a033fbfd 259 Gene3D G3DSA:3.40.50.300 11 257 1.8E-67 T 12-10-2018 ALFP_0906 dbfc4b43ebcb32ddd7340f03a033fbfd 259 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 13 259 3.3E-122 T 12-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 ALFP_0906 dbfc4b43ebcb32ddd7340f03a033fbfd 259 Pfam PF00005 ABC transporter 28 183 2.4E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0906 dbfc4b43ebcb32ddd7340f03a033fbfd 259 SMART SM00382 37 247 4.8E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0906 dbfc4b43ebcb32ddd7340f03a033fbfd 259 SUPERFAMILY SSF52540 12 244 6.17E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0071 cf9a33832e2a945a32a261d1fd82ed77 374 Pfam PF07883 Cupin domain 279 345 1.8E-10 T 12-10-2018 IPR013096 Cupin 2, conserved barrel ALFP_0071 cf9a33832e2a945a32a261d1fd82ed77 374 Pfam PF07883 Cupin domain 107 180 9.9E-17 T 12-10-2018 IPR013096 Cupin 2, conserved barrel ALFP_0071 cf9a33832e2a945a32a261d1fd82ed77 374 Gene3D G3DSA:2.60.120.10 20 374 4.5E-130 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_0071 cf9a33832e2a945a32a261d1fd82ed77 374 SUPERFAMILY SSF51182 21 371 1.86E-120 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_1871 1d56e7adc805b8599f90f86d360229a9 404 Pfam PF06969 HemN C-terminal domain 327 388 1.4E-11 T 12-10-2018 IPR010723 HemN, C-terminal ALFP_1871 1d56e7adc805b8599f90f86d360229a9 404 SMART SM00729 25 244 7.6E-48 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 ALFP_1871 1d56e7adc805b8599f90f86d360229a9 404 SUPERFAMILY SSF102114 18 399 1.44E-103 T 12-10-2018 ALFP_1871 1d56e7adc805b8599f90f86d360229a9 404 Gene3D G3DSA:3.80.30.20 16 320 5.9E-94 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe ALFP_1871 1d56e7adc805b8599f90f86d360229a9 404 Pfam PF04055 Radical SAM superfamily 30 192 3.1E-17 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 ALFP_1871 1d56e7adc805b8599f90f86d360229a9 404 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 27 372 2.7E-104 T 12-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 ALFP_1563 e665badad8edd5a3e9da50510f06b22e 325 Gene3D G3DSA:1.10.10.10 4 92 1.4E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1563 e665badad8edd5a3e9da50510f06b22e 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 3.9E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1563 e665badad8edd5a3e9da50510f06b22e 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 3.9E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1563 e665badad8edd5a3e9da50510f06b22e 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 3.9E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1563 e665badad8edd5a3e9da50510f06b22e 325 SUPERFAMILY SSF53850 88 296 7.19E-37 T 12-10-2018 ALFP_1563 e665badad8edd5a3e9da50510f06b22e 325 Pfam PF03466 LysR substrate binding domain 89 292 4.8E-41 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1563 e665badad8edd5a3e9da50510f06b22e 325 SUPERFAMILY SSF46785 4 113 1.16E-26 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1563 e665badad8edd5a3e9da50510f06b22e 325 Gene3D G3DSA:3.40.190.290 93 298 5.3E-36 T 12-10-2018 ALFP_1563 e665badad8edd5a3e9da50510f06b22e 325 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 4.7E-23 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0852 1f43eb70555c2ad858b8d9ce5b6197e2 791 Gene3D G3DSA:3.40.50.10950 481 785 4.5E-93 T 12-10-2018 ALFP_0852 1f43eb70555c2ad858b8d9ce5b6197e2 791 PIRSF PIRSF036684 28 791 0.0 T 12-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 ALFP_0852 1f43eb70555c2ad858b8d9ce5b6197e2 791 Pfam PF01515 Phosphate acetyl/butaryl transferase 459 785 1.2E-91 T 12-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 ALFP_0852 1f43eb70555c2ad858b8d9ce5b6197e2 791 SUPERFAMILY SSF53659 460 789 1.48E-84 T 12-10-2018 ALFP_0852 1f43eb70555c2ad858b8d9ce5b6197e2 791 Gene3D G3DSA:3.40.50.10750 607 761 4.5E-93 T 12-10-2018 ALFP_0852 1f43eb70555c2ad858b8d9ce5b6197e2 791 Gene3D G3DSA:3.40.50.10380 27 190 5.3E-66 T 12-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 ALFP_0852 1f43eb70555c2ad858b8d9ce5b6197e2 791 SUPERFAMILY SSF51735 193 468 6.09E-82 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0852 1f43eb70555c2ad858b8d9ce5b6197e2 791 Gene3D G3DSA:3.40.50.720 191 480 7.9E-78 T 12-10-2018 ALFP_0852 1f43eb70555c2ad858b8d9ce5b6197e2 791 Pfam PF00390 Malic enzyme, N-terminal domain 50 181 2.4E-24 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 ALFP_0852 1f43eb70555c2ad858b8d9ce5b6197e2 791 Pfam PF03949 Malic enzyme, NAD binding domain 195 390 2.6E-21 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 ALFP_0852 1f43eb70555c2ad858b8d9ce5b6197e2 791 SMART SM01274 48 181 1.0E-73 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 ALFP_0852 1f43eb70555c2ad858b8d9ce5b6197e2 791 SMART SM00919 193 430 5.6E-130 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 ALFP_0852 1f43eb70555c2ad858b8d9ce5b6197e2 791 SUPERFAMILY SSF53223 40 191 1.22E-50 T 12-10-2018 ALFP_1825 03000168ff33988c68b652d334bcb62a 217 SUPERFAMILY SSF116726 130 212 1.11E-13 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 ALFP_1825 03000168ff33988c68b652d334bcb62a 217 Pfam PF02080 TrkA-C domain 148 213 7.8E-8 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 ALFP_1825 03000168ff33988c68b652d334bcb62a 217 Gene3D G3DSA:3.30.70.1450 137 212 1.4E-12 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 ALFP_1825 03000168ff33988c68b652d334bcb62a 217 Pfam PF02254 TrkA-N domain 4 119 1.0E-24 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 ALFP_1825 03000168ff33988c68b652d334bcb62a 217 Gene3D G3DSA:3.40.50.720 2 136 9.2E-34 T 12-10-2018 ALFP_1825 03000168ff33988c68b652d334bcb62a 217 SUPERFAMILY SSF51735 3 133 3.94E-34 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0986 2e5476fb681632f2b1086e5d1f82b7f5 309 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 279 295 1.3E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_0986 2e5476fb681632f2b1086e5d1f82b7f5 309 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 264 279 1.3E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_0986 2e5476fb681632f2b1086e5d1f82b7f5 309 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 246 291 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ALFP_0986 2e5476fb681632f2b1086e5d1f82b7f5 309 Pfam PF12833 Helix-turn-helix domain 216 296 1.5E-16 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0986 2e5476fb681632f2b1086e5d1f82b7f5 309 Gene3D G3DSA:1.10.10.60 192 306 2.1E-24 T 12-10-2018 ALFP_0986 2e5476fb681632f2b1086e5d1f82b7f5 309 SUPERFAMILY SSF46689 255 301 1.43E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0986 2e5476fb681632f2b1086e5d1f82b7f5 309 SMART SM00342 210 295 2.7E-17 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0986 2e5476fb681632f2b1086e5d1f82b7f5 309 Pfam PF14525 AraC-binding-like domain 2 177 2.5E-24 T 12-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like ALFP_2656 446890c7c273772f1d6c735faa53897a 361 ProSitePatterns PS00534 Ferrochelatase signature. 218 237 - T 12-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 ALFP_2656 446890c7c273772f1d6c735faa53897a 361 Hamap MF_00323 Ferrochelatase [hemH]. 29 349 36.484 T 12-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 ALFP_2656 446890c7c273772f1d6c735faa53897a 361 SUPERFAMILY SSF53800 30 354 4.58E-105 T 12-10-2018 ALFP_2656 446890c7c273772f1d6c735faa53897a 361 TIGRFAM TIGR00109 hemH: ferrochelatase 30 349 2.9E-90 T 12-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 ALFP_2656 446890c7c273772f1d6c735faa53897a 361 Gene3D G3DSA:3.40.50.1400 31 350 7.2E-97 T 12-10-2018 ALFP_2656 446890c7c273772f1d6c735faa53897a 361 Pfam PF00762 Ferrochelatase 31 348 1.4E-109 T 12-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 ALFP_2656 446890c7c273772f1d6c735faa53897a 361 Gene3D G3DSA:3.40.50.1400 192 330 7.2E-97 T 12-10-2018 ALFP_2898 0d5dad6bc4c1aa8366f5b8f8245d8a19 509 SMART SM01118 1 193 1.3E-19 T 12-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 ALFP_2898 0d5dad6bc4c1aa8366f5b8f8245d8a19 509 ProDom PD009560 CYCLASE ADENYLATE CYCLASE ADENYLYL CYAB LYASE CLASS CYAB-TYPE THERMOPHILIC MJ0240 1 74 0.009 T 12-10-2018 ALFP_2898 0d5dad6bc4c1aa8366f5b8f8245d8a19 509 Gene3D G3DSA:1.40.20.10 233 508 1.6E-23 T 12-10-2018 IPR038186 CHAD domain superfamily ALFP_2898 0d5dad6bc4c1aa8366f5b8f8245d8a19 509 SMART SM00880 247 497 3.0E-15 T 12-10-2018 IPR007899 CHAD domain ALFP_2898 0d5dad6bc4c1aa8366f5b8f8245d8a19 509 Pfam PF05235 CHAD domain 265 462 7.2E-22 T 12-10-2018 IPR007899 CHAD domain ALFP_2898 0d5dad6bc4c1aa8366f5b8f8245d8a19 509 Pfam PF01928 CYTH domain 3 185 5.2E-19 T 12-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 ALFP_2898 0d5dad6bc4c1aa8366f5b8f8245d8a19 509 Gene3D G3DSA:2.40.320.10 1 188 3.4E-26 T 12-10-2018 ALFP_2898 0d5dad6bc4c1aa8366f5b8f8245d8a19 509 SUPERFAMILY SSF55154 2 208 7.19E-34 T 12-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 ALFP_0872 f90b05d367b543539caf6f6e543592e4 226 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 25 217 2.9E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0872 f90b05d367b543539caf6f6e543592e4 226 Gene3D G3DSA:1.10.3720.10 1 218 3.8E-57 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0872 f90b05d367b543539caf6f6e543592e4 226 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 9 215 1.9E-72 T 12-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 ALFP_0872 f90b05d367b543539caf6f6e543592e4 226 SUPERFAMILY SSF161098 4 209 3.66E-49 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1439 27a5b463f8e84101748fe6ed63fae34a 421 Gene3D G3DSA:3.40.50.150 114 416 1.2E-76 T 12-10-2018 ALFP_1439 27a5b463f8e84101748fe6ed63fae34a 421 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 295 307 3.6E-22 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase ALFP_1439 27a5b463f8e84101748fe6ed63fae34a 421 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 197 211 3.6E-22 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase ALFP_1439 27a5b463f8e84101748fe6ed63fae34a 421 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 226 236 3.6E-22 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase ALFP_1439 27a5b463f8e84101748fe6ed63fae34a 421 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 345 361 3.6E-22 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase ALFP_1439 27a5b463f8e84101748fe6ed63fae34a 421 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 399 416 3.6E-22 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase ALFP_1439 27a5b463f8e84101748fe6ed63fae34a 421 Pfam PF01189 16S rRNA methyltransferase RsmB/F 216 414 3.9E-45 T 12-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 ALFP_1439 27a5b463f8e84101748fe6ed63fae34a 421 SUPERFAMILY SSF53335 109 416 5.31E-62 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_3366 08f5bf2a5a8273ae4f1e62c8b571ff33 171 Gene3D G3DSA:3.30.70.2060 55 116 6.5E-22 T 12-10-2018 ALFP_3366 08f5bf2a5a8273ae4f1e62c8b571ff33 171 SUPERFAMILY SSF160387 55 164 1.07E-28 T 12-10-2018 ALFP_3366 08f5bf2a5a8273ae4f1e62c8b571ff33 171 Gene3D G3DSA:3.30.70.2050 117 171 1.3E-15 T 12-10-2018 ALFP_3366 08f5bf2a5a8273ae4f1e62c8b571ff33 171 Pfam PF05573 NosL 15 163 1.5E-45 T 12-10-2018 IPR008719 Nitrous oxide reductase accessory protein NosL ALFP_1939 2b8830e4971b377b175607294a655cd1 263 Pfam PF11738 Protein of unknown function (DUF3298) 202 249 7.0E-10 T 12-10-2018 IPR021729 Domain of unknown function DUF3298 ALFP_1939 2b8830e4971b377b175607294a655cd1 263 Gene3D G3DSA:3.30.565.40 38 166 8.5E-20 T 12-10-2018 ALFP_1939 2b8830e4971b377b175607294a655cd1 263 Gene3D G3DSA:3.90.640.20 168 263 1.6E-25 T 12-10-2018 IPR037126 PdaC/RsiV-like superfamily ALFP_1149 7e90715ddd9aaaef1af413eba3e2b252 487 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 424 1.4E-149 T 12-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 ALFP_1149 7e90715ddd9aaaef1af413eba3e2b252 487 Gene3D G3DSA:2.40.50.140 31 124 8.7E-29 T 12-10-2018 ALFP_1149 7e90715ddd9aaaef1af413eba3e2b252 487 SUPERFAMILY SSF50249 39 124 4.29E-16 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_1149 7e90715ddd9aaaef1af413eba3e2b252 487 SMART SM00316 37 118 2.1E-7 T 12-10-2018 IPR022967 RNA-binding domain, S1 ALFP_1149 7e90715ddd9aaaef1af413eba3e2b252 487 Pfam PF10150 Ribonuclease E/G family 120 391 9.4E-98 T 12-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 ALFP_3217 0b440300ed9b74265ea997461b7aeb1b 337 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 25 300 1.6E-81 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B ALFP_3217 0b440300ed9b74265ea997461b7aeb1b 337 SUPERFAMILY SSF50891 193 307 1.78E-8 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily ALFP_3217 0b440300ed9b74265ea997461b7aeb1b 337 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 2 323 1.4E-85 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B ALFP_3217 0b440300ed9b74265ea997461b7aeb1b 337 SMART SM00797 24 317 1.1E-114 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B ALFP_3217 0b440300ed9b74265ea997461b7aeb1b 337 Gene3D G3DSA:2.40.100.10 192 327 4.1E-46 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily ALFP_1872 226a1efc901427a2e2467a51fdab8207 470 Gene3D G3DSA:3.30.590.10 106 458 9.1E-143 T 12-10-2018 ALFP_1872 226a1efc901427a2e2467a51fdab8207 470 Pfam PF00120 Glutamine synthetase, catalytic domain 104 467 5.3E-135 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ALFP_1872 226a1efc901427a2e2467a51fdab8207 470 SMART SM01230 103 380 1.3E-142 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ALFP_1872 226a1efc901427a2e2467a51fdab8207 470 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 16 96 5.0E-29 T 12-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 ALFP_1872 226a1efc901427a2e2467a51fdab8207 470 ProSitePatterns PS00180 Glutamine synthetase signature 1. 51 69 - T 12-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 ALFP_1872 226a1efc901427a2e2467a51fdab8207 470 SUPERFAMILY SSF55931 103 469 1.67E-136 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 ALFP_1872 226a1efc901427a2e2467a51fdab8207 470 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 5 469 1.1E-193 T 12-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ALFP_1872 226a1efc901427a2e2467a51fdab8207 470 Gene3D G3DSA:3.10.20.70 3 105 2.0E-36 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ALFP_1872 226a1efc901427a2e2467a51fdab8207 470 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 260 275 - T 12-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 ALFP_1872 226a1efc901427a2e2467a51fdab8207 470 SUPERFAMILY SSF54368 4 98 3.27E-34 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ALFP_1872 226a1efc901427a2e2467a51fdab8207 470 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 387 399 - T 12-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ALFP_2738 edea31e497e4f34fe7c9cb1a5489e364 158 SMART SM00422 11 79 1.1E-22 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_2738 edea31e497e4f34fe7c9cb1a5489e364 158 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 12 23 7.0E-12 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_2738 edea31e497e4f34fe7c9cb1a5489e364 158 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 46 66 7.0E-12 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_2738 edea31e497e4f34fe7c9cb1a5489e364 158 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 23 36 7.0E-12 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_2738 edea31e497e4f34fe7c9cb1a5489e364 158 SUPERFAMILY SSF46955 11 133 1.58E-27 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily ALFP_2738 edea31e497e4f34fe7c9cb1a5489e364 158 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 11 150 3.0E-62 T 12-10-2018 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 ALFP_2738 edea31e497e4f34fe7c9cb1a5489e364 158 Gene3D G3DSA:1.10.1660.10 3 134 7.9E-33 T 12-10-2018 ALFP_2738 edea31e497e4f34fe7c9cb1a5489e364 158 Pfam PF00376 MerR family regulatory protein 12 48 8.9E-14 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_2738 edea31e497e4f34fe7c9cb1a5489e364 158 Pfam PF09278 MerR, DNA binding 54 118 1.2E-16 T 12-10-2018 IPR015358 Transcription regulator MerR, DNA binding ALFP_3243 4605747e2a628961afbf2b44a9aeb5bb 191 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 186 35.88 T 12-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 ALFP_3243 4605747e2a628961afbf2b44a9aeb5bb 191 Pfam PF13580 SIS domain 6 140 4.7E-36 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 ALFP_3243 4605747e2a628961afbf2b44a9aeb5bb 191 Gene3D G3DSA:3.40.50.10490 1 189 4.0E-75 T 12-10-2018 ALFP_3243 4605747e2a628961afbf2b44a9aeb5bb 191 SUPERFAMILY SSF53697 2 185 3.24E-56 T 12-10-2018 ALFP_1564 8f84e6659ccfa4cdeb6e1bb704cb3209 261 SMART SM00342 176 258 1.3E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1564 8f84e6659ccfa4cdeb6e1bb704cb3209 261 SUPERFAMILY SSF46689 213 260 2.8E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1564 8f84e6659ccfa4cdeb6e1bb704cb3209 261 Pfam PF12833 Helix-turn-helix domain 182 259 7.7E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1564 8f84e6659ccfa4cdeb6e1bb704cb3209 261 Gene3D G3DSA:1.10.10.60 160 261 2.7E-21 T 12-10-2018 ALFP_1564 8f84e6659ccfa4cdeb6e1bb704cb3209 261 SUPERFAMILY SSF51182 32 190 3.11E-8 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_1564 8f84e6659ccfa4cdeb6e1bb704cb3209 261 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 213 254 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ALFP_1564 8f84e6659ccfa4cdeb6e1bb704cb3209 261 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 242 258 8.3E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_1564 8f84e6659ccfa4cdeb6e1bb704cb3209 261 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 227 242 8.3E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_3167 702cdcd487ae82a6163ef4c4c135b201 232 Pfam PF00027 Cyclic nucleotide-binding domain 34 120 5.4E-14 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain ALFP_3167 702cdcd487ae82a6163ef4c4c135b201 232 SUPERFAMILY SSF51206 9 145 3.14E-27 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like ALFP_3167 702cdcd487ae82a6163ef4c4c135b201 232 Gene3D G3DSA:2.60.120.10 3 150 8.2E-28 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_3167 702cdcd487ae82a6163ef4c4c135b201 232 SUPERFAMILY SSF46785 151 228 8.91E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3167 702cdcd487ae82a6163ef4c4c135b201 232 SMART SM00419 172 220 8.5E-10 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 ALFP_3167 702cdcd487ae82a6163ef4c4c135b201 232 Pfam PF13545 Crp-like helix-turn-helix domain 153 224 1.3E-14 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 ALFP_3167 702cdcd487ae82a6163ef4c4c135b201 232 SMART SM00100 15 133 3.3E-14 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain ALFP_3167 702cdcd487ae82a6163ef4c4c135b201 232 Gene3D G3DSA:1.10.10.10 151 231 1.8E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3530 2c31e4c0fb59b779745b1664e5a249bb 298 Gene3D G3DSA:1.20.140.160 153 296 1.2E-14 T 12-10-2018 ALFP_3530 2c31e4c0fb59b779745b1664e5a249bb 298 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 90 103 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_3530 2c31e4c0fb59b779745b1664e5a249bb 298 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 28 295 5.1E-121 T 12-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 ALFP_3530 2c31e4c0fb59b779745b1664e5a249bb 298 SUPERFAMILY SSF88659 200 295 2.99E-18 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like ALFP_3530 2c31e4c0fb59b779745b1664e5a249bb 298 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 10 296 51.286 T 12-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 ALFP_3530 2c31e4c0fb59b779745b1664e5a249bb 298 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 61 294 5.4E-31 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 ALFP_3530 2c31e4c0fb59b779745b1664e5a249bb 298 PRINTS PR00046 Major sigma-70 factor signature 264 279 2.8E-18 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_3530 2c31e4c0fb59b779745b1664e5a249bb 298 PRINTS PR00046 Major sigma-70 factor signature 90 103 2.8E-18 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_3530 2c31e4c0fb59b779745b1664e5a249bb 298 PRINTS PR00046 Major sigma-70 factor signature 244 256 2.8E-18 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_3530 2c31e4c0fb59b779745b1664e5a249bb 298 PRINTS PR00046 Major sigma-70 factor signature 279 290 2.8E-18 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_3530 2c31e4c0fb59b779745b1664e5a249bb 298 Pfam PF00140 Sigma-70 factor, region 1.2 29 59 1.0E-4 T 12-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ALFP_3530 2c31e4c0fb59b779745b1664e5a249bb 298 Pfam PF04545 Sigma-70, region 4 240 291 1.4E-14 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 ALFP_3530 2c31e4c0fb59b779745b1664e5a249bb 298 Pfam PF04542 Sigma-70 region 2 66 135 7.7E-19 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_3530 2c31e4c0fb59b779745b1664e5a249bb 298 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 264 290 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 ALFP_3530 2c31e4c0fb59b779745b1664e5a249bb 298 Gene3D G3DSA:1.10.601.10 17 138 4.6E-31 T 12-10-2018 ALFP_3530 2c31e4c0fb59b779745b1664e5a249bb 298 SUPERFAMILY SSF88946 28 135 4.06E-40 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_3533 eb95b0d5ea90cc9ac38848258517a8e0 413 Hamap MF_01917 Cardiolipin synthase B [clsB]. 7 413 43.385 T 12-10-2018 IPR030872 Cardiolipin synthase B GO:0008808|GO:0032049 ALFP_3533 eb95b0d5ea90cc9ac38848258517a8e0 413 Gene3D G3DSA:3.30.870.10 216 371 3.4E-24 T 12-10-2018 ALFP_3533 eb95b0d5ea90cc9ac38848258517a8e0 413 SUPERFAMILY SSF56024 225 384 1.95E-33 T 12-10-2018 ALFP_3533 eb95b0d5ea90cc9ac38848258517a8e0 413 PIRSF PIRSF000850 4 293 1.7E-9 T 12-10-2018 ALFP_3533 eb95b0d5ea90cc9ac38848258517a8e0 413 PIRSF PIRSF000850 291 385 0.12 T 12-10-2018 ALFP_3533 eb95b0d5ea90cc9ac38848258517a8e0 413 SUPERFAMILY SSF56024 8 183 2.46E-41 T 12-10-2018 ALFP_3533 eb95b0d5ea90cc9ac38848258517a8e0 413 Gene3D G3DSA:3.30.870.10 6 215 1.3E-37 T 12-10-2018 ALFP_3533 eb95b0d5ea90cc9ac38848258517a8e0 413 SMART SM00155 116 143 0.0074 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 ALFP_3533 eb95b0d5ea90cc9ac38848258517a8e0 413 SMART SM00155 316 342 0.014 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 ALFP_3533 eb95b0d5ea90cc9ac38848258517a8e0 413 Pfam PF13091 PLD-like domain 29 139 2.0E-15 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 ALFP_3533 eb95b0d5ea90cc9ac38848258517a8e0 413 Pfam PF13091 PLD-like domain 244 367 7.4E-23 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 ALFP_2312 630997586c344fe46eb07b528e9240c9 128 Pfam PF12836 Helix-hairpin-helix motif 43 96 3.6E-16 T 12-10-2018 ALFP_2312 630997586c344fe46eb07b528e9240c9 128 SUPERFAMILY SSF47781 42 96 4.11E-19 T 12-10-2018 IPR010994 RuvA domain 2-like ALFP_2312 630997586c344fe46eb07b528e9240c9 128 SMART SM00278 83 102 770.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 ALFP_2312 630997586c344fe46eb07b528e9240c9 128 SMART SM00278 52 71 0.0072 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 ALFP_2312 630997586c344fe46eb07b528e9240c9 128 Gene3D G3DSA:1.10.150.280 39 109 5.3E-18 T 12-10-2018 ALFP_0118 fef2c551d5d3cd9768e064a7bb604936 236 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 30 235 4.0E-21 T 12-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 ALFP_0118 fef2c551d5d3cd9768e064a7bb604936 236 SUPERFAMILY SSF53850 22 236 1.5E-34 T 12-10-2018 ALFP_0118 fef2c551d5d3cd9768e064a7bb604936 236 Pfam PF13531 Bacterial extracellular solute-binding protein 23 235 3.6E-24 T 12-10-2018 ALFP_0118 fef2c551d5d3cd9768e064a7bb604936 236 Gene3D G3DSA:3.40.190.10 27 235 6.9E-30 T 12-10-2018 ALFP_0118 fef2c551d5d3cd9768e064a7bb604936 236 Gene3D G3DSA:3.40.190.10 96 198 6.9E-30 T 12-10-2018 ALFP_2285 20888521cfd18d6545c9ce2bea8221b4 145 Gene3D G3DSA:3.90.470.20 1 129 4.8E-32 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 ALFP_2285 20888521cfd18d6545c9ce2bea8221b4 145 SUPERFAMILY SSF56214 2 128 6.54E-28 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 ALFP_2285 20888521cfd18d6545c9ce2bea8221b4 145 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 103 5.3E-19 T 12-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 ALFP_2285 20888521cfd18d6545c9ce2bea8221b4 145 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 129 24.964 T 12-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 ALFP_2285 20888521cfd18d6545c9ce2bea8221b4 145 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 2 129 2.0E-28 T 12-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 ALFP_2285 20888521cfd18d6545c9ce2bea8221b4 145 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 22 112 1.0E-33 T 12-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 ALFP_2285 20888521cfd18d6545c9ce2bea8221b4 145 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 2 129 1.0E-21 T 12-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 ALFP_0244 95841d25ad82756376a154ceaca826bf 375 Gene3D G3DSA:3.40.50.2000 45 204 1.9E-56 T 12-10-2018 ALFP_0244 95841d25ad82756376a154ceaca826bf 375 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 46 358 8.1E-114 T 12-10-2018 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 ALFP_0244 95841d25ad82756376a154ceaca826bf 375 Gene3D G3DSA:3.40.50.2000 208 361 3.2E-32 T 12-10-2018 ALFP_0244 95841d25ad82756376a154ceaca826bf 375 SUPERFAMILY SSF53756 46 360 1.13E-62 T 12-10-2018 ALFP_0244 95841d25ad82756376a154ceaca826bf 375 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 119 347 1.9E-56 T 12-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 ALFP_1891 da3df4cc74ca10b0076997e209821239 373 Pfam PF13458 Periplasmic binding protein 28 365 9.3E-52 T 12-10-2018 IPR028081 Leucine-binding protein domain ALFP_1891 da3df4cc74ca10b0076997e209821239 373 Gene3D G3DSA:3.40.50.2300 30 348 1.3E-103 T 12-10-2018 ALFP_1891 da3df4cc74ca10b0076997e209821239 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 70 88 9.7E-34 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_1891 da3df4cc74ca10b0076997e209821239 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 281 294 9.7E-34 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_1891 da3df4cc74ca10b0076997e209821239 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 91 101 9.7E-34 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_1891 da3df4cc74ca10b0076997e209821239 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 29 45 9.7E-34 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_1891 da3df4cc74ca10b0076997e209821239 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 258 276 9.7E-34 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_1891 da3df4cc74ca10b0076997e209821239 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 332 347 9.7E-34 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_1891 da3df4cc74ca10b0076997e209821239 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 51 67 9.7E-34 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_1891 da3df4cc74ca10b0076997e209821239 373 SUPERFAMILY SSF53822 27 371 3.83E-85 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_1891 da3df4cc74ca10b0076997e209821239 373 Gene3D G3DSA:3.40.50.2300 148 276 1.3E-103 T 12-10-2018 ALFP_0346 13b33fe1977bae50a6dbb93d382c1129 185 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 84 163 6.3E-35 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 ALFP_0346 13b33fe1977bae50a6dbb93d382c1129 185 SUPERFAMILY SSF53155 8 89 5.69E-14 T 12-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 ALFP_0346 13b33fe1977bae50a6dbb93d382c1129 185 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 8 80 2.0E-6 T 12-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 ALFP_0346 13b33fe1977bae50a6dbb93d382c1129 185 Gene3D G3DSA:1.10.10.10 81 165 2.7E-36 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0346 13b33fe1977bae50a6dbb93d382c1129 185 Gene3D G3DSA:3.30.160.70 7 79 2.0E-13 T 12-10-2018 ALFP_0346 13b33fe1977bae50a6dbb93d382c1129 185 SUPERFAMILY SSF46767 83 164 4.71E-32 T 12-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 ALFP_0346 13b33fe1977bae50a6dbb93d382c1129 185 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 11 164 38.824 T 12-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 ALFP_0346 13b33fe1977bae50a6dbb93d382c1129 185 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 85 163 1.3E-33 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 ALFP_0242 26d7752c39e786f2461af49524a4a42d 267 Gene3D G3DSA:3.40.1640.10 21 254 9.1E-92 T 12-10-2018 ALFP_0242 26d7752c39e786f2461af49524a4a42d 267 Hamap MF_01830 Putative hydro-lyase . 12 266 53.454 T 12-10-2018 IPR016938 Uncharacterised protein family UPF0317 ALFP_0242 26d7752c39e786f2461af49524a4a42d 267 PIRSF PIRSF029755 4 267 5.6E-120 T 12-10-2018 IPR016938 Uncharacterised protein family UPF0317 ALFP_0242 26d7752c39e786f2461af49524a4a42d 267 Pfam PF07286 Protein of unknown function (DUF1445) 116 258 1.5E-62 T 12-10-2018 IPR009906 D-glutamate cyclase ALFP_0242 26d7752c39e786f2461af49524a4a42d 267 SUPERFAMILY SSF160920 13 259 1.44E-110 T 12-10-2018 IPR038021 Putative hydro-lyase ALFP_0242 26d7752c39e786f2461af49524a4a42d 267 Gene3D G3DSA:3.30.2040.10 126 238 9.1E-92 T 12-10-2018 ALFP_1222 e2ad833073630463c0aaedb6921ac137 335 SUPERFAMILY SSF103039 51 231 3.4E-18 T 12-10-2018 IPR028976 CheC-like superfamily ALFP_1222 e2ad833073630463c0aaedb6921ac137 335 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 6 320 4.8E-96 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 ALFP_1222 e2ad833073630463c0aaedb6921ac137 335 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 254 322 4.8E-15 T 12-10-2018 IPR001543 Surface presentation of antigen (SpoA) ALFP_1222 e2ad833073630463c0aaedb6921ac137 335 Pfam PF02154 Flagellar motor switch protein FliM 39 231 1.0E-68 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 ALFP_1222 e2ad833073630463c0aaedb6921ac137 335 SUPERFAMILY SSF101801 251 326 1.01E-10 T 12-10-2018 IPR036429 SpoA-like superfamily ALFP_1222 e2ad833073630463c0aaedb6921ac137 335 Gene3D G3DSA:3.40.1550.10 45 233 2.9E-54 T 12-10-2018 IPR028976 CheC-like superfamily ALFP_1222 e2ad833073630463c0aaedb6921ac137 335 PIRSF PIRSF002888 3 331 1.8E-89 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 ALFP_1222 e2ad833073630463c0aaedb6921ac137 335 PRINTS PR00955 Flagellar motor switch protein FliM signature 213 231 3.1E-27 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 ALFP_1222 e2ad833073630463c0aaedb6921ac137 335 PRINTS PR00955 Flagellar motor switch protein FliM signature 4 17 3.1E-27 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 ALFP_1222 e2ad833073630463c0aaedb6921ac137 335 PRINTS PR00955 Flagellar motor switch protein FliM signature 115 134 3.1E-27 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 ALFP_1222 e2ad833073630463c0aaedb6921ac137 335 PRINTS PR00955 Flagellar motor switch protein FliM signature 90 106 3.1E-27 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 ALFP_3425 063245e5ddfa015ddba1b2c967aaf461 263 Pfam PF00005 ABC transporter 37 178 1.4E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3425 063245e5ddfa015ddba1b2c967aaf461 263 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3425 063245e5ddfa015ddba1b2c967aaf461 263 SMART SM00382 45 225 4.6E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3425 063245e5ddfa015ddba1b2c967aaf461 263 Gene3D G3DSA:3.40.50.300 2 259 9.1E-65 T 12-10-2018 ALFP_3425 063245e5ddfa015ddba1b2c967aaf461 263 SUPERFAMILY SSF52540 31 241 8.67E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3646 d9562f8c8dea7c4ff6e6e4c5edcfdcf9 554 Gene3D G3DSA:3.30.300.310 460 554 1.6E-29 T 12-10-2018 ALFP_3646 d9562f8c8dea7c4ff6e6e4c5edcfdcf9 554 Pfam PF00501 AMP-binding enzyme 31 463 8.6E-110 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_3646 d9562f8c8dea7c4ff6e6e4c5edcfdcf9 554 SUPERFAMILY SSF56801 16 553 2.88E-150 T 12-10-2018 ALFP_3646 d9562f8c8dea7c4ff6e6e4c5edcfdcf9 554 ProSitePatterns PS00455 Putative AMP-binding domain signature. 212 223 - T 12-10-2018 IPR020845 AMP-binding, conserved site ALFP_3646 d9562f8c8dea7c4ff6e6e4c5edcfdcf9 554 Pfam PF13193 AMP-binding enzyme C-terminal domain 472 546 3.5E-18 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain ALFP_3646 d9562f8c8dea7c4ff6e6e4c5edcfdcf9 554 Gene3D G3DSA:3.40.50.12780 15 459 4.7E-120 T 12-10-2018 ALFP_3469 32b57be27ae6324a13881a5e4ba5d474 276 PIRSF PIRSF006241 1 257 9.3E-61 T 12-10-2018 IPR026040 Hydroxypyruvate isomerase-like ALFP_3469 32b57be27ae6324a13881a5e4ba5d474 276 Gene3D G3DSA:3.20.20.150 1 259 6.2E-57 T 12-10-2018 ALFP_3469 32b57be27ae6324a13881a5e4ba5d474 276 Pfam PF01261 Xylose isomerase-like TIM barrel 20 207 2.2E-21 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain ALFP_3469 32b57be27ae6324a13881a5e4ba5d474 276 SUPERFAMILY SSF51658 1 254 1.93E-57 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily ALFP_2811 b891c5adf8c04aed38381cb48a627203 181 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 12-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 ALFP_2811 b891c5adf8c04aed38381cb48a627203 181 Gene3D G3DSA:3.30.420.10 3 157 4.9E-47 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 ALFP_2811 b891c5adf8c04aed38381cb48a627203 181 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 1 153 45.744 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 ALFP_2811 b891c5adf8c04aed38381cb48a627203 181 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 3 154 4.9E-47 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 ALFP_2811 b891c5adf8c04aed38381cb48a627203 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 4 17 3.4E-31 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 ALFP_2811 b891c5adf8c04aed38381cb48a627203 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 3.4E-31 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 ALFP_2811 b891c5adf8c04aed38381cb48a627203 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 3.4E-31 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 ALFP_2811 b891c5adf8c04aed38381cb48a627203 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 3.4E-31 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 ALFP_2811 b891c5adf8c04aed38381cb48a627203 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 3.4E-31 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 ALFP_2811 b891c5adf8c04aed38381cb48a627203 181 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 3 150 2.3E-49 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 ALFP_2811 b891c5adf8c04aed38381cb48a627203 181 SUPERFAMILY SSF53098 1 155 4.3E-50 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily ALFP_0841 1bf3345ec1aa4ca4acd1b6aae6760c04 233 Pfam PF12710 haloacid dehalogenase-like hydrolase 8 196 8.2E-40 T 12-10-2018 ALFP_0841 1bf3345ec1aa4ca4acd1b6aae6760c04 233 Gene3D G3DSA:1.20.1440.100 19 93 7.9E-81 T 12-10-2018 ALFP_0841 1bf3345ec1aa4ca4acd1b6aae6760c04 233 Gene3D G3DSA:3.40.50.1000 7 221 7.9E-81 T 12-10-2018 IPR023214 HAD superfamily ALFP_0841 1bf3345ec1aa4ca4acd1b6aae6760c04 233 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 7 209 5.0E-42 T 12-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like ALFP_0841 1bf3345ec1aa4ca4acd1b6aae6760c04 233 SUPERFAMILY SSF56784 7 220 2.85E-33 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_0841 1bf3345ec1aa4ca4acd1b6aae6760c04 233 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 8 197 3.3E-25 T 12-10-2018 ALFP_0230 054576cc5f464bf7ef14debdf8024f88 338 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 247 1.1E-28 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_0230 054576cc5f464bf7ef14debdf8024f88 338 Gene3D G3DSA:3.40.190.10 28 243 5.1E-48 T 12-10-2018 ALFP_0230 054576cc5f464bf7ef14debdf8024f88 338 Gene3D G3DSA:3.40.190.10 120 226 5.1E-48 T 12-10-2018 ALFP_0230 054576cc5f464bf7ef14debdf8024f88 338 SMART SM00062 33 263 2.8E-36 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_0230 054576cc5f464bf7ef14debdf8024f88 338 SUPERFAMILY SSF53850 24 255 6.29E-43 T 12-10-2018 ALFP_1091 1eb5184f642fb8713251f9fb3be3f478 152 Gene3D G3DSA:3.40.630.30 3 148 1.0E-21 T 12-10-2018 ALFP_1091 1eb5184f642fb8713251f9fb3be3f478 152 SUPERFAMILY SSF55729 1 147 7.77E-23 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_1091 1eb5184f642fb8713251f9fb3be3f478 152 Pfam PF13673 Acetyltransferase (GNAT) domain 29 141 6.0E-13 T 12-10-2018 IPR000182 GNAT domain ALFP_0910 7b2095f3a6b59be23127a9ccbfd62001 221 SMART SM00448 1 112 2.4E-42 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_0910 7b2095f3a6b59be23127a9ccbfd62001 221 Gene3D G3DSA:3.40.50.2300 1 122 1.0E-42 T 12-10-2018 ALFP_0910 7b2095f3a6b59be23127a9ccbfd62001 221 SUPERFAMILY SSF52172 1 178 1.42E-41 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_0910 7b2095f3a6b59be23127a9ccbfd62001 221 SMART SM00862 145 216 4.6E-26 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_0910 7b2095f3a6b59be23127a9ccbfd62001 221 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 216 4.5E-24 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_0910 7b2095f3a6b59be23127a9ccbfd62001 221 Pfam PF00072 Response regulator receiver domain 3 112 1.7E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_0910 7b2095f3a6b59be23127a9ccbfd62001 221 Gene3D G3DSA:1.10.10.10 123 221 4.3E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2417 e6d258488a56aa671aa5f61b42e89f22 488 Pfam PF00171 Aldehyde dehydrogenase family 10 474 3.0E-167 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_2417 e6d258488a56aa671aa5f61b42e89f22 488 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 274 285 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 ALFP_2417 e6d258488a56aa671aa5f61b42e89f22 488 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 246 253 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 ALFP_2417 e6d258488a56aa671aa5f61b42e89f22 488 Gene3D G3DSA:3.40.605.10 12 469 9.7E-167 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_2417 e6d258488a56aa671aa5f61b42e89f22 488 SUPERFAMILY SSF53720 4 478 1.83E-154 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_2417 e6d258488a56aa671aa5f61b42e89f22 488 Gene3D G3DSA:3.40.309.10 251 444 9.7E-167 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_2006 4f6999aca37e09186c8aad8df697bb1a 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 391 1.8E-136 T 12-10-2018 IPR002155 Thiolase GO:0016747 ALFP_2006 4f6999aca37e09186c8aad8df697bb1a 393 Gene3D G3DSA:3.40.47.10 6 276 3.3E-150 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2006 4f6999aca37e09186c8aad8df697bb1a 393 PIRSF PIRSF000429 1 393 8.1E-127 T 12-10-2018 IPR002155 Thiolase GO:0016747 ALFP_2006 4f6999aca37e09186c8aad8df697bb1a 393 SUPERFAMILY SSF53901 271 392 7.93E-44 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2006 4f6999aca37e09186c8aad8df697bb1a 393 Pfam PF00108 Thiolase, N-terminal domain 4 261 9.0E-88 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 ALFP_2006 4f6999aca37e09186c8aad8df697bb1a 393 Pfam PF02803 Thiolase, C-terminal domain 270 392 3.6E-45 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 ALFP_2006 4f6999aca37e09186c8aad8df697bb1a 393 SUPERFAMILY SSF53901 3 270 2.15E-83 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2006 4f6999aca37e09186c8aad8df697bb1a 393 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 85 103 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 ALFP_2006 4f6999aca37e09186c8aad8df697bb1a 393 Gene3D G3DSA:3.40.47.10 127 389 3.3E-150 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2006 4f6999aca37e09186c8aad8df697bb1a 393 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 ALFP_2367 133e9f5dd6e2dd11d8808f22c917b8d0 333 SMART SM00382 42 249 9.5E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2367 133e9f5dd6e2dd11d8808f22c917b8d0 333 SUPERFAMILY SSF52540 27 229 4.1E-14 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2367 133e9f5dd6e2dd11d8808f22c917b8d0 333 Pfam PF13401 AAA domain 44 204 1.3E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0678 5d8723deb9acde108c5666a9f2458c3d 85 SUPERFAMILY SSF54285 7 85 5.23E-16 T 12-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp ALFP_0678 5d8723deb9acde108c5666a9f2458c3d 85 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 8 85 3.8E-20 T 12-10-2018 ALFP_0678 5d8723deb9acde108c5666a9f2458c3d 85 Gene3D G3DSA:3.10.20.30 7 85 4.4E-20 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_0678 5d8723deb9acde108c5666a9f2458c3d 85 Pfam PF02597 ThiS family 9 85 2.3E-16 T 12-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 ALFP_3485 20113236ef3f941e8577ceb2b6d80c0d 267 Pfam PF05013 N-formylglutamate amidohydrolase 14 233 1.3E-69 T 12-10-2018 IPR007709 N-formylglutamate amidohydrolase ALFP_3485 20113236ef3f941e8577ceb2b6d80c0d 267 SUPERFAMILY SSF53187 1 263 7.53E-81 T 12-10-2018 ALFP_3485 20113236ef3f941e8577ceb2b6d80c0d 267 Gene3D G3DSA:3.40.630.40 5 264 6.0E-75 T 12-10-2018 ALFP_3485 20113236ef3f941e8577ceb2b6d80c0d 267 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 7 265 4.1E-108 T 12-10-2018 IPR010247 N-formylglutamate deformylase ALFP_3712 c167c591bd8f02060a9d27f642cc52cc 398 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 18 391 2.1E-122 T 12-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 ALFP_3712 c167c591bd8f02060a9d27f642cc52cc 398 Pfam PF01546 Peptidase family M20/M25/M40 80 392 1.8E-36 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 ALFP_3712 c167c591bd8f02060a9d27f642cc52cc 398 Gene3D G3DSA:3.30.70.360 187 309 8.5E-107 T 12-10-2018 ALFP_3712 c167c591bd8f02060a9d27f642cc52cc 398 SUPERFAMILY SSF53187 11 393 2.51E-57 T 12-10-2018 ALFP_3712 c167c591bd8f02060a9d27f642cc52cc 398 Gene3D G3DSA:3.40.630.10 21 381 8.5E-107 T 12-10-2018 ALFP_3712 c167c591bd8f02060a9d27f642cc52cc 398 SUPERFAMILY SSF55031 187 290 4.78E-21 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain ALFP_3712 c167c591bd8f02060a9d27f642cc52cc 398 Pfam PF07687 Peptidase dimerisation domain 183 290 1.8E-25 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain ALFP_2937 fe6227e20b7cb81b616c4ec6af7b477b 340 Pfam PF13478 XdhC Rossmann domain 171 313 2.4E-36 T 12-10-2018 IPR027051 XdhC Rossmann domain ALFP_2937 fe6227e20b7cb81b616c4ec6af7b477b 340 Gene3D G3DSA:3.40.50.720 170 319 7.7E-43 T 12-10-2018 ALFP_2937 fe6227e20b7cb81b616c4ec6af7b477b 340 Pfam PF02625 XdhC and CoxI family 15 89 1.7E-20 T 12-10-2018 IPR003777 XdhC- CoxI ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 Gene3D G3DSA:3.10.20.30 1 95 4.6E-20 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 Pfam PF00175 Oxidoreductase NAD-binding domain 209 312 1.3E-23 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 SUPERFAMILY SSF52343 201 331 1.44E-37 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 Pfam PF00970 Oxidoreductase FAD-binding domain 106 197 2.0E-13 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 245 256 1.9E-9 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 132 142 1.9E-9 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 298 306 1.9E-9 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 208 227 1.9E-9 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 SUPERFAMILY SSF63380 102 198 2.33E-22 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 Gene3D G3DSA:3.40.50.80 201 333 4.0E-34 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 SUPERFAMILY SSF54292 2 90 3.41E-19 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 8 82 1.5E-12 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 Gene3D G3DSA:2.40.30.10 102 199 9.9E-23 T 12-10-2018 ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 233 242 6.8E-18 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 208 227 6.8E-18 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 298 306 6.8E-18 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 148 155 6.8E-18 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 144 6.8E-18 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_3575 8138a0dc00a1c34c8d177655c333ba56 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 192 201 6.8E-18 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 ALFP_3464 8d0be591485d3d4f0286208f3a482b1d 109 SUPERFAMILY SSF54909 1 102 6.17E-26 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel ALFP_3464 8d0be591485d3d4f0286208f3a482b1d 109 Gene3D G3DSA:3.30.70.100 1 104 2.3E-32 T 12-10-2018 ALFP_3464 8d0be591485d3d4f0286208f3a482b1d 109 Pfam PF07978 NIPSNAP 6 102 1.3E-25 T 12-10-2018 IPR012577 NIPSNAP ALFP_0137 7561de529f98c0ee6913409abb7c31f2 535 Gene3D G3DSA:3.90.226.10 1 272 8.9E-96 T 12-10-2018 ALFP_0137 7561de529f98c0ee6913409abb7c31f2 535 SUPERFAMILY SSF52096 28 268 7.17E-68 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_0137 7561de529f98c0ee6913409abb7c31f2 535 Pfam PF01039 Carboxyl transferase domain 50 525 1.1E-148 T 12-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 ALFP_0137 7561de529f98c0ee6913409abb7c31f2 535 SUPERFAMILY SSF52096 275 535 2.71E-87 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_0137 7561de529f98c0ee6913409abb7c31f2 535 Gene3D G3DSA:3.90.226.10 274 535 2.7E-104 T 12-10-2018 ALFP_0332 3300bdc65ce6cdf3ce31610f463241eb 420 Gene3D G3DSA:3.30.70.360 216 333 9.9E-130 T 12-10-2018 ALFP_0332 3300bdc65ce6cdf3ce31610f463241eb 420 SUPERFAMILY SSF53187 3 413 7.78E-83 T 12-10-2018 ALFP_0332 3300bdc65ce6cdf3ce31610f463241eb 420 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 11 412 1.5E-113 T 12-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 ALFP_0332 3300bdc65ce6cdf3ce31610f463241eb 420 Pfam PF01546 Peptidase family M20/M25/M40 82 411 5.2E-27 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 ALFP_0332 3300bdc65ce6cdf3ce31610f463241eb 420 Gene3D G3DSA:3.40.630.10 27 409 9.9E-130 T 12-10-2018 ALFP_0332 3300bdc65ce6cdf3ce31610f463241eb 420 PIRSF PIRSF001235 7 419 3.6E-137 T 12-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 ALFP_0332 3300bdc65ce6cdf3ce31610f463241eb 420 SUPERFAMILY SSF55031 216 334 2.39E-22 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain ALFP_0322 dd52d07258a8cab8c12697104cb78244 280 SUPERFAMILY SSF56752 3 276 2.88E-69 T 12-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 ALFP_0322 dd52d07258a8cab8c12697104cb78244 280 Pfam PF01063 Amino-transferase class IV 34 254 3.6E-43 T 12-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 ALFP_0322 dd52d07258a8cab8c12697104cb78244 280 Gene3D G3DSA:3.20.10.10 128 279 1.4E-40 T 12-10-2018 ALFP_0322 dd52d07258a8cab8c12697104cb78244 280 Gene3D G3DSA:3.30.470.10 1 125 1.7E-29 T 12-10-2018 ALFP_2881 fd91c96b5e899db802b845c954b14737 93 SUPERFAMILY SSF160379 16 81 4.18E-10 T 12-10-2018 ALFP_1457 55cfbbf82d8292bbf3a45a20587ad8a9 255 SUPERFAMILY SSF51182 11 163 1.25E-15 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_1457 55cfbbf82d8292bbf3a45a20587ad8a9 255 Gene3D G3DSA:2.60.120.10 18 95 1.4E-8 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_1457 55cfbbf82d8292bbf3a45a20587ad8a9 255 Gene3D G3DSA:1.10.10.60 155 254 3.5E-18 T 12-10-2018 ALFP_1457 55cfbbf82d8292bbf3a45a20587ad8a9 255 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 221 236 6.8E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_1457 55cfbbf82d8292bbf3a45a20587ad8a9 255 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 236 252 6.8E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_1457 55cfbbf82d8292bbf3a45a20587ad8a9 255 SMART SM00342 170 252 3.3E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1457 55cfbbf82d8292bbf3a45a20587ad8a9 255 SUPERFAMILY SSF46689 213 252 3.0E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1457 55cfbbf82d8292bbf3a45a20587ad8a9 255 Pfam PF02311 AraC-like ligand binding domain 25 93 2.0E-5 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 ALFP_1457 55cfbbf82d8292bbf3a45a20587ad8a9 255 Pfam PF12833 Helix-turn-helix domain 176 252 1.4E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1457 55cfbbf82d8292bbf3a45a20587ad8a9 255 SUPERFAMILY SSF46689 171 205 1.03E-5 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1267 0837267c7e87078a0345806fdbddc02d 384 Gene3D G3DSA:2.40.420.20 285 354 2.7E-98 T 12-10-2018 ALFP_1267 0837267c7e87078a0345806fdbddc02d 384 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 24 356 1.4E-80 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 ALFP_1267 0837267c7e87078a0345806fdbddc02d 384 Gene3D G3DSA:2.40.30.170 39 284 2.7E-98 T 12-10-2018 ALFP_1267 0837267c7e87078a0345806fdbddc02d 384 Gene3D G3DSA:1.10.287.470 83 156 2.7E-98 T 12-10-2018 ALFP_1267 0837267c7e87078a0345806fdbddc02d 384 Gene3D G3DSA:2.40.50.100 48 191 2.7E-98 T 12-10-2018 ALFP_1267 0837267c7e87078a0345806fdbddc02d 384 SUPERFAMILY SSF111369 39 278 5.1E-69 T 12-10-2018 ALFP_1267 0837267c7e87078a0345806fdbddc02d 384 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 50 274 1.6E-19 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain ALFP_2413 8230a7852cf7ae06b13e625f4d324b98 223 Gene3D G3DSA:1.10.3720.10 2 217 8.7E-50 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2413 8230a7852cf7ae06b13e625f4d324b98 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 214 2.2E-23 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_2413 8230a7852cf7ae06b13e625f4d324b98 223 SUPERFAMILY SSF161098 8 207 2.09E-42 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2413 8230a7852cf7ae06b13e625f4d324b98 223 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 8 110 1.5E-23 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 ALFP_2413 8230a7852cf7ae06b13e625f4d324b98 223 TIGRFAM TIGR03004 ectoine_ehuC: ectoine/hydroxyectoine ABC transporter, permease protein EhuC 7 221 2.4E-82 T 12-10-2018 IPR014342 Ectoine/hydroxyectoine ABC transporter, permease protein EhuC ALFP_1737 09a8087edb2de34c3bfc36593f3a7705 415 SUPERFAMILY SSF53686 16 402 1.96E-65 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme ALFP_1737 09a8087edb2de34c3bfc36593f3a7705 415 TIGRFAM TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family 39 402 3.3E-97 T 12-10-2018 IPR010081 Diaminopropionate ammonia-lyase GO:0008838|GO:0030170 ALFP_1737 09a8087edb2de34c3bfc36593f3a7705 415 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 50 386 1.4E-64 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme ALFP_1737 09a8087edb2de34c3bfc36593f3a7705 415 Gene3D G3DSA:3.40.50.1100 48 402 2.1E-137 T 12-10-2018 ALFP_1737 09a8087edb2de34c3bfc36593f3a7705 415 Gene3D G3DSA:3.40.50.1100 87 211 2.1E-137 T 12-10-2018 ALFP_1416 6c6876ebbc0d02760073737372beef21 107 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 22 99 1.0E-35 T 12-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 ALFP_1416 6c6876ebbc0d02760073737372beef21 107 Gene3D G3DSA:3.30.1390.10 2 105 2.5E-42 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like ALFP_1416 6c6876ebbc0d02760073737372beef21 107 SUPERFAMILY SSF54736 20 103 1.46E-31 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like ALFP_1416 6c6876ebbc0d02760073737372beef21 107 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 10 99 27.644 T 12-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS ALFP_1369 e9227e1ab86cb329017454afa46ff30a 114 SUPERFAMILY SSF103481 13 112 4.32E-5 T 12-10-2018 ALFP_1369 e9227e1ab86cb329017454afa46ff30a 114 PIRSF PIRSF021239 1 112 1.4E-49 T 12-10-2018 IPR007437 Protein of unknown function DUF486 ALFP_1369 e9227e1ab86cb329017454afa46ff30a 114 Pfam PF04342 Putative member of DMT superfamily (DUF486) 7 109 2.6E-45 T 12-10-2018 IPR007437 Protein of unknown function DUF486 ALFP_0867 63d61df9a645587ea8f26fb52768e0f6 409 Gene3D G3DSA:1.20.1250.20 5 198 1.8E-20 T 12-10-2018 ALFP_0867 63d61df9a645587ea8f26fb52768e0f6 409 Gene3D G3DSA:1.20.1250.20 214 406 1.2E-18 T 12-10-2018 ALFP_0867 63d61df9a645587ea8f26fb52768e0f6 409 SUPERFAMILY SSF103473 11 400 3.66E-53 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_0867 63d61df9a645587ea8f26fb52768e0f6 409 Pfam PF07690 Major Facilitator Superfamily 15 247 5.8E-21 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_1623 9f2ae7e4913e5b35ca671401cbc06363 379 SUPERFAMILY SSF51905 5 371 4.02E-60 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1623 9f2ae7e4913e5b35ca671401cbc06363 379 Pfam PF01494 FAD binding domain 5 347 8.3E-26 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 ALFP_1623 9f2ae7e4913e5b35ca671401cbc06363 379 SUPERFAMILY SSF54373 176 277 2.12E-7 T 12-10-2018 ALFP_1623 9f2ae7e4913e5b35ca671401cbc06363 379 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 1.0E-19 T 12-10-2018 ALFP_1623 9f2ae7e4913e5b35ca671401cbc06363 379 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 336 352 1.0E-19 T 12-10-2018 ALFP_1623 9f2ae7e4913e5b35ca671401cbc06363 379 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 286 301 1.0E-19 T 12-10-2018 ALFP_1623 9f2ae7e4913e5b35ca671401cbc06363 379 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 1.0E-19 T 12-10-2018 ALFP_1623 9f2ae7e4913e5b35ca671401cbc06363 379 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 301 317 1.0E-19 T 12-10-2018 ALFP_1623 9f2ae7e4913e5b35ca671401cbc06363 379 Gene3D G3DSA:3.50.50.60 6 379 2.4E-158 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_3012 efc6d1518fa24a7b75647980aaf97cc5 314 SUPERFAMILY SSF53850 89 298 2.17E-39 T 12-10-2018 ALFP_3012 efc6d1518fa24a7b75647980aaf97cc5 314 Pfam PF03466 LysR substrate binding domain 89 295 4.0E-37 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_3012 efc6d1518fa24a7b75647980aaf97cc5 314 SUPERFAMILY SSF46785 4 112 1.16E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3012 efc6d1518fa24a7b75647980aaf97cc5 314 Gene3D G3DSA:3.40.190.290 91 294 2.0E-54 T 12-10-2018 ALFP_3012 efc6d1518fa24a7b75647980aaf97cc5 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.2E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3012 efc6d1518fa24a7b75647980aaf97cc5 314 Gene3D G3DSA:1.10.10.10 2 87 1.2E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1558 f1a19eba1ce0796ae3cff62aa87eee22 505 Pfam PF00171 Aldehyde dehydrogenase family 19 485 1.2E-143 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_1558 f1a19eba1ce0796ae3cff62aa87eee22 505 SUPERFAMILY SSF53720 5 490 1.05E-151 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_1558 f1a19eba1ce0796ae3cff62aa87eee22 505 Gene3D G3DSA:3.40.605.10 27 466 1.3E-152 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_1558 f1a19eba1ce0796ae3cff62aa87eee22 505 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 9 489 3.2E-211 T 12-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 ALFP_1558 f1a19eba1ce0796ae3cff62aa87eee22 505 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 278 289 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 ALFP_1558 f1a19eba1ce0796ae3cff62aa87eee22 505 Gene3D G3DSA:3.40.309.10 253 458 1.3E-152 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_2189 08db7d380afa4edf89d32082b5d1a150 376 SUPERFAMILY SSF51905 5 293 3.95E-31 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2189 08db7d380afa4edf89d32082b5d1a150 376 Pfam PF01266 FAD dependent oxidoreductase 7 368 2.8E-33 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 ALFP_2189 08db7d380afa4edf89d32082b5d1a150 376 Gene3D G3DSA:3.50.50.60 7 368 2.5E-33 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2189 08db7d380afa4edf89d32082b5d1a150 376 TIGRFAM TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364 6 369 2.0E-124 T 12-10-2018 IPR017741 FAD-dependent oxidoreductase, HpnW ALFP_2189 08db7d380afa4edf89d32082b5d1a150 376 Gene3D G3DSA:3.30.9.10 85 335 2.5E-33 T 12-10-2018 ALFP_2517 498caf399d5ceaa0b1a45978f1fe327e 296 Pfam PF01926 50S ribosome-binding GTPase 11 124 7.4E-24 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_2517 498caf399d5ceaa0b1a45978f1fe327e 296 SUPERFAMILY SSF52540 11 202 1.31E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2517 498caf399d5ceaa0b1a45978f1fe327e 296 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 165 3.3E-24 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 ALFP_2517 498caf399d5ceaa0b1a45978f1fe327e 296 TIGRFAM TIGR00436 era: GTP-binding protein Era 9 278 4.5E-77 T 12-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2517 498caf399d5ceaa0b1a45978f1fe327e 296 SUPERFAMILY SSF54814 182 296 1.11E-34 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 ALFP_2517 498caf399d5ceaa0b1a45978f1fe327e 296 Gene3D G3DSA:3.40.50.300 6 183 1.8E-45 T 12-10-2018 ALFP_2517 498caf399d5ceaa0b1a45978f1fe327e 296 Gene3D G3DSA:3.30.300.20 185 296 1.5E-34 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta ALFP_2517 498caf399d5ceaa0b1a45978f1fe327e 296 Hamap MF_00367 GTPase Era [era]. 6 295 33.254 T 12-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2517 498caf399d5ceaa0b1a45978f1fe327e 296 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 79 97 6.5E-7 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_2517 498caf399d5ceaa0b1a45978f1fe327e 296 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 11 31 6.5E-7 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_2517 498caf399d5ceaa0b1a45978f1fe327e 296 Pfam PF07650 KH domain 208 283 7.0E-14 T 12-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_1063 1268210593bde86ad40fd5234e2dfd21 226 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 41 4.1E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1063 1268210593bde86ad40fd5234e2dfd21 226 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 4.1E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1063 1268210593bde86ad40fd5234e2dfd21 226 Gene3D G3DSA:1.10.357.10 17 202 4.5E-19 T 12-10-2018 ALFP_1063 1268210593bde86ad40fd5234e2dfd21 226 SUPERFAMILY SSF46689 23 81 2.62E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1063 1268210593bde86ad40fd5234e2dfd21 226 Pfam PF00440 Bacterial regulatory proteins, tetR family 29 72 8.7E-11 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_2645 48ec26f10aec55783467d5f5beb87242 585 Gene3D G3DSA:3.10.20.310 73 161 2.4E-16 T 12-10-2018 ALFP_2645 48ec26f10aec55783467d5f5beb87242 585 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 224 544 6.5E-15 T 12-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal ALFP_2645 48ec26f10aec55783467d5f5beb87242 585 Pfam PF08479 POTRA domain, ShlB-type 88 161 6.9E-19 T 12-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type ALFP_2645 48ec26f10aec55783467d5f5beb87242 585 Gene3D G3DSA:2.40.160.50 195 580 1.6E-64 T 12-10-2018 ALFP_3625 3d5f0c3dd7e95fc814e1e91ac619eda1 131 Pfam PF00410 Ribosomal protein S8 5 130 4.3E-51 T 12-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3625 3d5f0c3dd7e95fc814e1e91ac619eda1 131 Gene3D G3DSA:3.30.1370.30 2 73 8.5E-29 T 12-10-2018 ALFP_3625 3d5f0c3dd7e95fc814e1e91ac619eda1 131 Gene3D G3DSA:3.30.1490.10 74 131 1.4E-24 T 12-10-2018 ALFP_3625 3d5f0c3dd7e95fc814e1e91ac619eda1 131 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 131 32.786 T 12-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3625 3d5f0c3dd7e95fc814e1e91ac619eda1 131 SUPERFAMILY SSF56047 2 130 2.22E-48 T 12-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3625 3d5f0c3dd7e95fc814e1e91ac619eda1 131 ProSitePatterns PS00053 Ribosomal protein S8 signature. 101 118 - T 12-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_2932 19505c4797d97af09de18a86e048dadb 248 SMART SM00345 21 80 8.1E-22 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2932 19505c4797d97af09de18a86e048dadb 248 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 80 1.8E-20 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2932 19505c4797d97af09de18a86e048dadb 248 SMART SM00866 97 239 6.9E-7 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ALFP_2932 19505c4797d97af09de18a86e048dadb 248 SUPERFAMILY SSF64288 68 245 6.44E-22 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily ALFP_2932 19505c4797d97af09de18a86e048dadb 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 54 3.4E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2932 19505c4797d97af09de18a86e048dadb 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 54 70 3.4E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2932 19505c4797d97af09de18a86e048dadb 248 Pfam PF07702 UTRA domain 131 237 2.9E-12 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ALFP_2932 19505c4797d97af09de18a86e048dadb 248 SUPERFAMILY SSF46785 11 82 1.94E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2932 19505c4797d97af09de18a86e048dadb 248 Gene3D G3DSA:1.10.10.10 5 80 1.9E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2932 19505c4797d97af09de18a86e048dadb 248 Gene3D G3DSA:3.40.1410.10 123 244 8.2E-17 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily ALFP_0712 4d22cb38232f05fb2e391ef02a58f995 482 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 39 479 3.1E-80 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ALFP_0712 4d22cb38232f05fb2e391ef02a58f995 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 439 452 6.8E-19 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ALFP_0712 4d22cb38232f05fb2e391ef02a58f995 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 74 93 6.8E-19 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ALFP_0712 4d22cb38232f05fb2e391ef02a58f995 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 304 326 6.8E-19 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ALFP_0712 4d22cb38232f05fb2e391ef02a58f995 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 362 376 6.8E-19 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ALFP_0712 4d22cb38232f05fb2e391ef02a58f995 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 377 391 6.8E-19 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ALFP_0712 4d22cb38232f05fb2e391ef02a58f995 482 SUPERFAMILY SSF56601 33 479 4.54E-86 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like ALFP_0712 4d22cb38232f05fb2e391ef02a58f995 482 Gene3D G3DSA:3.40.710.10 283 478 2.3E-55 T 12-10-2018 ALFP_0712 4d22cb38232f05fb2e391ef02a58f995 482 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 71 462 5.0E-58 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ALFP_0712 4d22cb38232f05fb2e391ef02a58f995 482 Gene3D G3DSA:3.50.80.20 98 173 1.9E-10 T 12-10-2018 ALFP_2036 c8c41440541e5d05dc7b459eb638f0c9 255 Pfam PF01476 LysM domain 48 90 1.6E-13 T 12-10-2018 IPR018392 LysM domain ALFP_2036 c8c41440541e5d05dc7b459eb638f0c9 255 Gene3D G3DSA:2.70.70.10 122 253 2.4E-33 T 12-10-2018 IPR011055 Duplicated hybrid motif ALFP_2036 c8c41440541e5d05dc7b459eb638f0c9 255 Gene3D G3DSA:3.10.350.10 45 89 1.3E-16 T 12-10-2018 IPR036779 LysM domain superfamily ALFP_2036 c8c41440541e5d05dc7b459eb638f0c9 255 SMART SM00257 47 91 2.0E-15 T 12-10-2018 IPR018392 LysM domain ALFP_2036 c8c41440541e5d05dc7b459eb638f0c9 255 Pfam PF01551 Peptidase family M23 155 248 2.3E-28 T 12-10-2018 IPR016047 Peptidase M23 ALFP_2036 c8c41440541e5d05dc7b459eb638f0c9 255 SUPERFAMILY SSF51261 48 252 2.82E-45 T 12-10-2018 IPR011055 Duplicated hybrid motif ALFP_1223 30d0e28208959779e0619944544e4955 173 Pfam PF03748 Flagellar basal body-associated protein FliL 74 173 4.6E-20 T 12-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 ALFP_2710 3910be44ecbef169135512ee2f0cc794 470 ProSitePatterns PS00571 Amidases signature. 154 185 - T 12-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 ALFP_2710 3910be44ecbef169135512ee2f0cc794 470 Pfam PF01425 Amidase 26 449 1.9E-120 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_2710 3910be44ecbef169135512ee2f0cc794 470 Gene3D G3DSA:3.90.1300.10 5 468 1.7E-151 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_2710 3910be44ecbef169135512ee2f0cc794 470 SUPERFAMILY SSF75304 4 466 2.35E-146 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_2836 d733fd46ed0c916e63d379b8f232c995 316 Gene3D G3DSA:1.10.1040.10 187 315 1.5E-41 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ALFP_2836 d733fd46ed0c916e63d379b8f232c995 316 SUPERFAMILY SSF51735 25 187 3.94E-49 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2836 d733fd46ed0c916e63d379b8f232c995 316 PIRSF PIRSF000103 20 316 6.1E-75 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 ALFP_2836 d733fd46ed0c916e63d379b8f232c995 316 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 29 42 - T 12-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 ALFP_2836 d733fd46ed0c916e63d379b8f232c995 316 SUPERFAMILY SSF48179 187 314 3.63E-39 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_2836 d733fd46ed0c916e63d379b8f232c995 316 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 26 186 2.9E-47 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 ALFP_2836 d733fd46ed0c916e63d379b8f232c995 316 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 189 308 2.2E-34 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 ALFP_2836 d733fd46ed0c916e63d379b8f232c995 316 Gene3D G3DSA:3.40.50.720 22 186 1.1E-51 T 12-10-2018 ALFP_0530 42a6da917adb69363d07ad9a61a2a210 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 326 1.8E-80 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0530 42a6da917adb69363d07ad9a61a2a210 330 Gene3D G3DSA:3.40.190.150 32 320 1.1E-103 T 12-10-2018 ALFP_0530 42a6da917adb69363d07ad9a61a2a210 330 SUPERFAMILY SSF53850 115 293 2.06E-9 T 12-10-2018 ALFP_0530 42a6da917adb69363d07ad9a61a2a210 330 Gene3D G3DSA:3.40.190.10 131 255 1.1E-103 T 12-10-2018 ALFP_0530 42a6da917adb69363d07ad9a61a2a210 330 PIRSF PIRSF017082 1 330 2.8E-82 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0073 b06e031c0f505b20a6ad51a8f7640e95 343 ProSitePatterns PS00920 Nitrilases / cyanide hydratase signature 1. 40 55 - T 12-10-2018 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 ALFP_0073 b06e031c0f505b20a6ad51a8f7640e95 343 SUPERFAMILY SSF56317 6 311 7.19E-66 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily ALFP_0073 b06e031c0f505b20a6ad51a8f7640e95 343 Gene3D G3DSA:3.60.110.10 1 295 1.2E-96 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily ALFP_0073 b06e031c0f505b20a6ad51a8f7640e95 343 Pfam PF00795 Carbon-nitrogen hydrolase 9 288 2.4E-38 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 ALFP_3652 902b290436d40ad43f7f49aea25117f3 269 Pfam PF00005 ABC transporter 32 174 8.7E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3652 902b290436d40ad43f7f49aea25117f3 269 Gene3D G3DSA:3.40.50.300 14 244 6.3E-63 T 12-10-2018 ALFP_3652 902b290436d40ad43f7f49aea25117f3 269 SMART SM00382 41 225 3.1E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3652 902b290436d40ad43f7f49aea25117f3 269 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3652 902b290436d40ad43f7f49aea25117f3 269 SUPERFAMILY SSF52540 17 226 4.72E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0023 7a3b537449c36e4e251e3e5a40bc8989 269 SUPERFAMILY SSF55781 80 266 9.16E-33 T 12-10-2018 ALFP_0023 7a3b537449c36e4e251e3e5a40bc8989 269 Pfam PF09339 IclR helix-turn-helix domain 25 75 9.4E-15 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_0023 7a3b537449c36e4e251e3e5a40bc8989 269 Pfam PF01614 Bacterial transcriptional regulator 145 262 1.6E-11 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal ALFP_0023 7a3b537449c36e4e251e3e5a40bc8989 269 SUPERFAMILY SSF46785 25 95 1.77E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0023 7a3b537449c36e4e251e3e5a40bc8989 269 SMART SM00346 22 112 5.9E-25 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_0023 7a3b537449c36e4e251e3e5a40bc8989 269 Gene3D G3DSA:1.10.10.10 12 90 5.1E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0023 7a3b537449c36e4e251e3e5a40bc8989 269 Gene3D G3DSA:3.30.450.40 95 263 5.7E-29 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_0869 8156f6b5c10629e0905b61e65a2ba2c3 164 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 10 154 5.9E-46 T 12-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC ALFP_0869 8156f6b5c10629e0905b61e65a2ba2c3 164 SUPERFAMILY SSF55826 10 157 2.49E-40 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 ALFP_0869 8156f6b5c10629e0905b61e65a2ba2c3 164 Pfam PF04073 Aminoacyl-tRNA editing domain 36 149 8.8E-26 T 12-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 ALFP_0869 8156f6b5c10629e0905b61e65a2ba2c3 164 PIRSF PIRSF006181 5 161 1.7E-45 T 12-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC ALFP_0869 8156f6b5c10629e0905b61e65a2ba2c3 164 Gene3D G3DSA:3.90.960.10 9 159 7.1E-45 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 ALFP_3059 5d0280acfa3c2eff55f0e5aa53bd8a03 266 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 6 244 3.9E-81 T 12-10-2018 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 ALFP_3059 5d0280acfa3c2eff55f0e5aa53bd8a03 266 Gene3D G3DSA:3.40.50.300 1 258 1.3E-62 T 12-10-2018 ALFP_3059 5d0280acfa3c2eff55f0e5aa53bd8a03 266 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3059 5d0280acfa3c2eff55f0e5aa53bd8a03 266 SMART SM00382 30 226 1.5E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3059 5d0280acfa3c2eff55f0e5aa53bd8a03 266 SUPERFAMILY SSF52540 3 228 1.55E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3059 5d0280acfa3c2eff55f0e5aa53bd8a03 266 Pfam PF00005 ABC transporter 21 176 3.8E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0967 e7e0efe5be9e2e6112b714d77581634f 256 Pfam PF09339 IclR helix-turn-helix domain 17 66 6.9E-11 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_0967 e7e0efe5be9e2e6112b714d77581634f 256 Gene3D G3DSA:1.10.10.10 11 79 1.5E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0967 e7e0efe5be9e2e6112b714d77581634f 256 SUPERFAMILY SSF55781 89 252 4.64E-33 T 12-10-2018 ALFP_0967 e7e0efe5be9e2e6112b714d77581634f 256 SUPERFAMILY SSF46785 17 77 4.62E-10 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0967 e7e0efe5be9e2e6112b714d77581634f 256 Pfam PF01614 Bacterial transcriptional regulator 136 251 8.9E-11 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal ALFP_0967 e7e0efe5be9e2e6112b714d77581634f 256 Gene3D G3DSA:3.30.450.40 90 253 4.1E-29 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_0967 e7e0efe5be9e2e6112b714d77581634f 256 SMART SM00346 15 102 0.0012 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_2078 e1952c83a1d6f1313239cb11ac89a28f 153 Gene3D G3DSA:3.10.580.10 1 149 1.7E-31 T 12-10-2018 ALFP_2078 e1952c83a1d6f1313239cb11ac89a28f 153 SUPERFAMILY SSF54631 2 128 2.02E-27 T 12-10-2018 ALFP_2078 e1952c83a1d6f1313239cb11ac89a28f 153 SMART SM00116 14 61 5.1E-6 T 12-10-2018 IPR000644 CBS domain ALFP_2078 e1952c83a1d6f1313239cb11ac89a28f 153 SMART SM00116 79 126 0.03 T 12-10-2018 IPR000644 CBS domain ALFP_2078 e1952c83a1d6f1313239cb11ac89a28f 153 Pfam PF00571 CBS domain 72 127 1.0E-7 T 12-10-2018 IPR000644 CBS domain ALFP_2078 e1952c83a1d6f1313239cb11ac89a28f 153 Pfam PF00571 CBS domain 19 60 7.5E-6 T 12-10-2018 IPR000644 CBS domain ALFP_1258 8ef3b53d65c74e63cb4d92905509fbce 339 SUPERFAMILY SSF53850 115 294 6.88E-7 T 12-10-2018 ALFP_1258 8ef3b53d65c74e63cb4d92905509fbce 339 Gene3D G3DSA:3.40.190.10 139 260 8.2E-98 T 12-10-2018 ALFP_1258 8ef3b53d65c74e63cb4d92905509fbce 339 Gene3D G3DSA:3.40.190.150 42 329 8.2E-98 T 12-10-2018 ALFP_1258 8ef3b53d65c74e63cb4d92905509fbce 339 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 62 334 7.4E-70 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_1258 8ef3b53d65c74e63cb4d92905509fbce 339 PIRSF PIRSF017082 4 338 1.3E-68 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_2419 39f7f2c06654948786d888cd4828b452 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 8.0E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2419 39f7f2c06654948786d888cd4828b452 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 8.0E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2419 39f7f2c06654948786d888cd4828b452 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 8.0E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2419 39f7f2c06654948786d888cd4828b452 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 8.0E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2419 39f7f2c06654948786d888cd4828b452 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 8.0E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2419 39f7f2c06654948786d888cd4828b452 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 224 244 8.0E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2419 39f7f2c06654948786d888cd4828b452 264 Gene3D G3DSA:3.40.50.720 1 263 6.1E-69 T 12-10-2018 ALFP_2419 39f7f2c06654948786d888cd4828b452 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 2.8E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2419 39f7f2c06654948786d888cd4828b452 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 2.8E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2419 39f7f2c06654948786d888cd4828b452 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 2.8E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2419 39f7f2c06654948786d888cd4828b452 264 SUPERFAMILY SSF51735 7 261 1.13E-67 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2419 39f7f2c06654948786d888cd4828b452 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 261 1.0E-44 T 12-10-2018 ALFP_1067 3b12a3f8ce76ebfdd565d50036fc966c 543 TIGRFAM TIGR01838 PHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I 18 540 5.9E-190 T 12-10-2018 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I GO:0005737|GO:0016746|GO:0042619 ALFP_1067 3b12a3f8ce76ebfdd565d50036fc966c 543 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 47 213 1.1E-62 T 12-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 ALFP_1067 3b12a3f8ce76ebfdd565d50036fc966c 543 Gene3D G3DSA:3.40.50.1820 207 464 8.1E-11 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1067 3b12a3f8ce76ebfdd565d50036fc966c 543 SUPERFAMILY SSF53474 172 474 2.98E-39 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_3115 b55d4b24e6dc5cedae16f4fefdb5f252 278 SUPERFAMILY SSF56300 6 260 1.55E-53 T 12-10-2018 ALFP_3115 b55d4b24e6dc5cedae16f4fefdb5f252 278 Pfam PF00149 Calcineurin-like phosphoesterase 9 179 5.6E-12 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 ALFP_3115 b55d4b24e6dc5cedae16f4fefdb5f252 278 Gene3D G3DSA:3.60.21.10 8 277 5.5E-70 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like ALFP_3115 b55d4b24e6dc5cedae16f4fefdb5f252 278 PIRSF PIRSF000903 7 277 4.6E-99 T 12-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 ALFP_3115 b55d4b24e6dc5cedae16f4fefdb5f252 278 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 8 266 1.2E-74 T 12-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 ALFP_1489 d8165cf3ad5660665358d5461ca4167b 507 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 20 506 43.649 T 12-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 ALFP_1489 d8165cf3ad5660665358d5461ca4167b 507 SUPERFAMILY SSF50249 12 153 4.16E-45 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_1489 d8165cf3ad5660665358d5461ca4167b 507 Pfam PF01336 OB-fold nucleic acid binding domain 67 144 1.9E-16 T 12-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 ALFP_1489 d8165cf3ad5660665358d5461ca4167b 507 SUPERFAMILY SSF55681 160 504 2.84E-113 T 12-10-2018 ALFP_1489 d8165cf3ad5660665358d5461ca4167b 507 Pfam PF00152 tRNA synthetases class II (D, K and N) 160 503 1.9E-81 T 12-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_1489 d8165cf3ad5660665358d5461ca4167b 507 Gene3D G3DSA:2.40.50.140 14 152 8.3E-44 T 12-10-2018 ALFP_1489 d8165cf3ad5660665358d5461ca4167b 507 PRINTS PR00982 Lysyl-tRNA synthetase signature 260 277 2.9E-38 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 ALFP_1489 d8165cf3ad5660665358d5461ca4167b 507 PRINTS PR00982 Lysyl-tRNA synthetase signature 388 404 2.9E-38 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 ALFP_1489 d8165cf3ad5660665358d5461ca4167b 507 PRINTS PR00982 Lysyl-tRNA synthetase signature 213 229 2.9E-38 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 ALFP_1489 d8165cf3ad5660665358d5461ca4167b 507 PRINTS PR00982 Lysyl-tRNA synthetase signature 242 255 2.9E-38 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 ALFP_1489 d8165cf3ad5660665358d5461ca4167b 507 PRINTS PR00982 Lysyl-tRNA synthetase signature 197 207 2.9E-38 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 ALFP_1489 d8165cf3ad5660665358d5461ca4167b 507 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 15 505 2.5E-199 T 12-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 ALFP_1489 d8165cf3ad5660665358d5461ca4167b 507 Gene3D G3DSA:3.30.930.10 160 504 3.1E-127 T 12-10-2018 ALFP_1455 cedffdc4f028cacffb622bb50b861abc 272 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 3 69 1.7E-25 T 12-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 ALFP_1455 cedffdc4f028cacffb622bb50b861abc 272 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 4 271 1.2E-138 T 12-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 ALFP_1455 cedffdc4f028cacffb622bb50b861abc 272 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 272 55.471 T 12-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 ALFP_1455 cedffdc4f028cacffb622bb50b861abc 272 Gene3D G3DSA:2.160.10.10 87 257 1.1E-56 T 12-10-2018 ALFP_1455 cedffdc4f028cacffb622bb50b861abc 272 Gene3D G3DSA:1.10.166.10 1 70 3.6E-30 T 12-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 ALFP_1455 cedffdc4f028cacffb622bb50b861abc 272 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 ALFP_1455 cedffdc4f028cacffb622bb50b861abc 272 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 209 4.0E-13 T 12-10-2018 IPR001451 Hexapeptide repeat ALFP_1455 cedffdc4f028cacffb622bb50b861abc 272 SUPERFAMILY SSF51161 2 256 9.98E-73 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily ALFP_1455 cedffdc4f028cacffb622bb50b861abc 272 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 132 166 1.3E-4 T 12-10-2018 IPR001451 Hexapeptide repeat ALFP_0314 156c90625d83d50e857426eff1e576ab 324 Pfam PF16220 Domain of unknown function (DUF4880) 17 58 9.9E-9 T 12-10-2018 IPR032623 FecR, N-terminal ALFP_0314 156c90625d83d50e857426eff1e576ab 324 PIRSF PIRSF018266 8 324 1.5E-56 T 12-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component ALFP_0314 156c90625d83d50e857426eff1e576ab 324 Gene3D G3DSA:2.60.120.1440 110 244 3.7E-5 T 12-10-2018 ALFP_0314 156c90625d83d50e857426eff1e576ab 324 Pfam PF16344 Domain of unknown function (DUF4974) 223 308 2.2E-10 T 12-10-2018 IPR032508 Protein FecR, C-terminal ALFP_0314 156c90625d83d50e857426eff1e576ab 324 Pfam PF04773 FecR protein 118 210 1.4E-9 T 12-10-2018 IPR006860 FecR protein ALFP_0314 156c90625d83d50e857426eff1e576ab 324 Gene3D G3DSA:3.55.50.30 248 321 1.2E-6 T 12-10-2018 ALFP_0461 7b2e62fc5fa72986887a40d5687a1042 301 Pfam PF13557 Putative MetA-pathway of phenol degradation 64 296 7.3E-63 T 12-10-2018 IPR025737 MetA-pathway of phenol degradation, putative ALFP_0103 aebd607fce3af58c01a8f823686b0541 328 Gene3D G3DSA:1.10.3720.10 84 312 4.4E-22 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0103 aebd607fce3af58c01a8f823686b0541 328 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 319 2.4E-40 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0103 aebd607fce3af58c01a8f823686b0541 328 SUPERFAMILY SSF161098 92 306 6.76E-18 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2311 1d39e0b34eaebcdb51474a5adfe8768b 301 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 8 289 6.4E-59 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme ALFP_2311 1d39e0b34eaebcdb51474a5adfe8768b 301 SUPERFAMILY SSF53686 2 299 5.63E-82 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme ALFP_2311 1d39e0b34eaebcdb51474a5adfe8768b 301 Gene3D G3DSA:3.40.50.1100 10 296 2.7E-103 T 12-10-2018 ALFP_2311 1d39e0b34eaebcdb51474a5adfe8768b 301 TIGRFAM TIGR01138 cysM: cysteine synthase B 6 300 1.4E-133 T 12-10-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 ALFP_2311 1d39e0b34eaebcdb51474a5adfe8768b 301 Gene3D G3DSA:3.40.50.1100 42 148 2.7E-103 T 12-10-2018 ALFP_2311 1d39e0b34eaebcdb51474a5adfe8768b 301 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 37 55 - T 12-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 ALFP_2311 1d39e0b34eaebcdb51474a5adfe8768b 301 TIGRFAM TIGR01136 cysKM: cysteine synthase 7 300 2.6E-114 T 12-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 ALFP_3347 4b579a907e7cbfa0b04baf66f18bbfe7 473 SUPERFAMILY SSF53383 79 349 1.19E-45 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_3347 4b579a907e7cbfa0b04baf66f18bbfe7 473 Pfam PF12390 Selenocysteine synthase N terminal 12 49 2.0E-5 T 12-10-2018 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 ALFP_3347 4b579a907e7cbfa0b04baf66f18bbfe7 473 Gene3D G3DSA:3.40.640.10 98 362 9.7E-155 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_3347 4b579a907e7cbfa0b04baf66f18bbfe7 473 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 473 232.708 T 12-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 ALFP_3347 4b579a907e7cbfa0b04baf66f18bbfe7 473 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 12 462 8.0E-182 T 12-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 ALFP_3347 4b579a907e7cbfa0b04baf66f18bbfe7 473 Pfam PF03841 L-seryl-tRNA selenium transferase 86 456 7.9E-165 T 12-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 ALFP_3347 4b579a907e7cbfa0b04baf66f18bbfe7 473 Gene3D G3DSA:3.90.1150.110 13 457 9.7E-155 T 12-10-2018 ALFP_2186 3008f4bed106d1b4e9e1beecdefeb2b0 603 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 137 307 1.1E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_2186 3008f4bed106d1b4e9e1beecdefeb2b0 603 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 418 580 1.2E-7 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_2186 3008f4bed106d1b4e9e1beecdefeb2b0 603 SUPERFAMILY SSF161098 48 300 1.12E-43 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2186 3008f4bed106d1b4e9e1beecdefeb2b0 603 Gene3D G3DSA:1.10.3720.10 327 591 3.2E-28 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2186 3008f4bed106d1b4e9e1beecdefeb2b0 603 Gene3D G3DSA:1.10.3720.10 48 310 3.3E-49 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2186 3008f4bed106d1b4e9e1beecdefeb2b0 603 TIGRFAM TIGR03262 PhnU2: putative 2-aminoethylphosphonate ABC transporter, permease protein 49 595 2.4E-230 T 12-10-2018 IPR017664 2-aminoethylphosphonate ABC transport system, permease protein, putative ALFP_2186 3008f4bed106d1b4e9e1beecdefeb2b0 603 SUPERFAMILY SSF161098 325 582 1.83E-31 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3545 0107eed70be83410457e5222e186bf65 229 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 2 228 1.1E-85 T 12-10-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 ALFP_3545 0107eed70be83410457e5222e186bf65 229 Gene3D G3DSA:1.10.10.10 1 70 5.8E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3545 0107eed70be83410457e5222e186bf65 229 SMART SM00866 87 224 2.0E-26 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ALFP_3545 0107eed70be83410457e5222e186bf65 229 SUPERFAMILY SSF64288 55 226 1.73E-38 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily ALFP_3545 0107eed70be83410457e5222e186bf65 229 SMART SM00345 7 66 1.8E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_3545 0107eed70be83410457e5222e186bf65 229 Pfam PF07702 UTRA domain 87 224 1.9E-26 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ALFP_3545 0107eed70be83410457e5222e186bf65 229 SUPERFAMILY SSF46785 1 70 1.33E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3545 0107eed70be83410457e5222e186bf65 229 Gene3D G3DSA:3.40.1410.10 71 228 4.3E-28 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily ALFP_3545 0107eed70be83410457e5222e186bf65 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 40 7.4E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_3545 0107eed70be83410457e5222e186bf65 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 56 7.4E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_3545 0107eed70be83410457e5222e186bf65 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 5.9E-19 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_3635 bfa3a59597cba5a704067431557e511a 652 SUPERFAMILY SSF90123 85 397 1.28E-54 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_3635 bfa3a59597cba5a704067431557e511a 652 ProSitePatterns PS00211 ABC transporters family signature. 552 566 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3635 bfa3a59597cba5a704067431557e511a 652 Gene3D G3DSA:3.90.70.10 1 70 6.7E-13 T 12-10-2018 ALFP_3635 bfa3a59597cba5a704067431557e511a 652 Pfam PF00664 ABC transporter transmembrane region 105 360 4.5E-24 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 ALFP_3635 bfa3a59597cba5a704067431557e511a 652 Gene3D G3DSA:1.20.1560.10 87 398 1.3E-53 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_3635 bfa3a59597cba5a704067431557e511a 652 Pfam PF00005 ABC transporter 431 579 1.6E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3635 bfa3a59597cba5a704067431557e511a 652 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 3 643 2.0E-276 T 12-10-2018 IPR017750 ATPase, type I secretion system ALFP_3635 bfa3a59597cba5a704067431557e511a 652 Gene3D G3DSA:3.40.50.300 407 648 1.5E-82 T 12-10-2018 ALFP_3635 bfa3a59597cba5a704067431557e511a 652 SUPERFAMILY SSF52540 404 638 1.97E-75 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3635 bfa3a59597cba5a704067431557e511a 652 SMART SM00382 440 628 3.1E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1626 75ce59ebeee28806affa0bc68dbea293 267 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 24 250 2.4E-60 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 ALFP_1626 75ce59ebeee28806affa0bc68dbea293 267 PIRSF PIRSF004848 14 256 1.3E-73 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 ALFP_1626 75ce59ebeee28806affa0bc68dbea293 267 SUPERFAMILY SSF51419 16 248 1.14E-75 T 12-10-2018 IPR029066 PLP-binding barrel ALFP_1626 75ce59ebeee28806affa0bc68dbea293 267 Pfam PF01168 Alanine racemase, N-terminal domain 42 250 2.8E-24 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 ALFP_1626 75ce59ebeee28806affa0bc68dbea293 267 Gene3D G3DSA:3.20.20.10 8 261 1.1E-87 T 12-10-2018 IPR029066 PLP-binding barrel ALFP_1626 75ce59ebeee28806affa0bc68dbea293 267 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 25 249 29.84 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 ALFP_2443 b52bdd090be12b0ce491678be9b1af33 501 Gene3D G3DSA:3.40.50.300 8 130 3.4E-9 T 12-10-2018 ALFP_2443 b52bdd090be12b0ce491678be9b1af33 501 Pfam PF05872 Bacterial protein of unknown function (DUF853) 5 501 2.2E-227 T 12-10-2018 IPR033186 Helicase HerA-like C-terminal ALFP_2443 b52bdd090be12b0ce491678be9b1af33 501 SUPERFAMILY SSF52540 11 369 8.87E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2443 b52bdd090be12b0ce491678be9b1af33 501 Gene3D G3DSA:3.40.50.300 201 377 5.4E-21 T 12-10-2018 ALFP_0222 3337ea33b7332481035180f5a7d032d2 228 Gene3D G3DSA:2.60.120.10 6 140 2.4E-19 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_0222 3337ea33b7332481035180f5a7d032d2 228 SUPERFAMILY SSF46785 150 224 3.59E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0222 3337ea33b7332481035180f5a7d032d2 228 SMART SM00100 13 134 2.6E-4 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain ALFP_0222 3337ea33b7332481035180f5a7d032d2 228 SUPERFAMILY SSF51206 11 140 3.01E-23 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like ALFP_0222 3337ea33b7332481035180f5a7d032d2 228 Pfam PF13545 Crp-like helix-turn-helix domain 151 222 1.1E-11 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 ALFP_0222 3337ea33b7332481035180f5a7d032d2 228 Gene3D G3DSA:1.10.10.10 150 225 1.0E-12 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0222 3337ea33b7332481035180f5a7d032d2 228 Pfam PF00027 Cyclic nucleotide-binding domain 33 118 4.0E-14 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain ALFP_3711 87d83d6dcd5b2510a7b703fc7da4d1c5 200 SUPERFAMILY SSF47413 15 81 1.63E-13 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_3711 87d83d6dcd5b2510a7b703fc7da4d1c5 200 SUPERFAMILY SSF51182 93 196 2.17E-19 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_3711 87d83d6dcd5b2510a7b703fc7da4d1c5 200 Pfam PF13560 Helix-turn-helix domain 18 74 6.4E-10 T 12-10-2018 ALFP_3711 87d83d6dcd5b2510a7b703fc7da4d1c5 200 SMART SM00530 21 76 4.9E-10 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_3711 87d83d6dcd5b2510a7b703fc7da4d1c5 200 Gene3D G3DSA:2.60.120.10 92 196 2.6E-23 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_3711 87d83d6dcd5b2510a7b703fc7da4d1c5 200 Gene3D G3DSA:1.10.260.40 13 91 5.6E-13 T 12-10-2018 ALFP_3711 87d83d6dcd5b2510a7b703fc7da4d1c5 200 Pfam PF07883 Cupin domain 134 196 1.5E-13 T 12-10-2018 IPR013096 Cupin 2, conserved barrel ALFP_2375 0b5df9232cf1f75f9fe049adc40fa936 554 Pfam PF00474 Sodium:solute symporter family 58 473 5.1E-110 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 ALFP_2375 0b5df9232cf1f75f9fe049adc40fa936 554 Gene3D G3DSA:1.20.1730.10 47 548 1.2E-59 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily ALFP_2375 0b5df9232cf1f75f9fe049adc40fa936 554 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 58 472 1.1E-58 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 ALFP_2375 0b5df9232cf1f75f9fe049adc40fa936 554 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 173 198 - T 12-10-2018 IPR018212 Sodium/solute symporter, conserved site ALFP_0855 10bc6811186b81fb8e346da66d1217c4 295 Gene3D G3DSA:3.20.20.70 1 293 1.3E-89 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0855 10bc6811186b81fb8e346da66d1217c4 295 SMART SM01130 2 290 1.2E-97 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0855 10bc6811186b81fb8e346da66d1217c4 295 SUPERFAMILY SSF51569 2 288 1.47E-87 T 12-10-2018 ALFP_0855 10bc6811186b81fb8e346da66d1217c4 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 3.2E-14 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0855 10bc6811186b81fb8e346da66d1217c4 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 3.2E-14 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0855 10bc6811186b81fb8e346da66d1217c4 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 129 146 3.2E-14 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0855 10bc6811186b81fb8e346da66d1217c4 295 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 6 281 6.9E-63 T 12-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 ALFP_0855 10bc6811186b81fb8e346da66d1217c4 295 Pfam PF00701 Dihydrodipicolinate synthetase family 3 287 1.9E-64 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0855 10bc6811186b81fb8e346da66d1217c4 295 PIRSF PIRSF001365 1 295 2.3E-83 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_2024 a83a9592af3b4c242c13468dfe7582f2 235 SUPERFAMILY SSF55120 56 231 3.84E-37 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_2024 a83a9592af3b4c242c13468dfe7582f2 235 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 98 229 4.0E-36 T 12-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 ALFP_2024 a83a9592af3b4c242c13468dfe7582f2 235 SUPERFAMILY SSF55174 2 73 4.19E-12 T 12-10-2018 ALFP_2024 a83a9592af3b4c242c13468dfe7582f2 235 Pfam PF01479 S4 domain 2 33 3.5E-5 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_2024 a83a9592af3b4c242c13468dfe7582f2 235 Pfam PF00849 RNA pseudouridylate synthase 57 150 3.3E-8 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_2024 a83a9592af3b4c242c13468dfe7582f2 235 Gene3D G3DSA:3.30.2350.10 51 235 4.4E-43 T 12-10-2018 ALFP_2024 a83a9592af3b4c242c13468dfe7582f2 235 Gene3D G3DSA:3.10.290.10 1 47 3.0E-12 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 ALFP_1272 77d59688f25608171ce4eb6b19640344 296 Gene3D G3DSA:1.10.3720.10 93 288 2.3E-27 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1272 77d59688f25608171ce4eb6b19640344 296 SUPERFAMILY SSF161098 97 283 1.7E-35 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1272 77d59688f25608171ce4eb6b19640344 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 287 3.4E-21 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_3598 c6a4421bdd9fcf4ea6dc0d7079461fd3 815 Gene3D G3DSA:1.10.3810.10 69 266 5.8E-73 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_3598 c6a4421bdd9fcf4ea6dc0d7079461fd3 815 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 85 735 1.4E-177 T 12-10-2018 ALFP_3598 c6a4421bdd9fcf4ea6dc0d7079461fd3 815 Pfam PF00912 Transglycosylase 76 249 3.8E-60 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_3598 c6a4421bdd9fcf4ea6dc0d7079461fd3 815 Pfam PF00905 Penicillin binding protein transpeptidase domain 451 697 2.7E-38 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 ALFP_3598 c6a4421bdd9fcf4ea6dc0d7079461fd3 815 SUPERFAMILY SSF53955 62 271 4.5E-74 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily ALFP_3598 c6a4421bdd9fcf4ea6dc0d7079461fd3 815 Gene3D G3DSA:2.40.50.140 375 446 5.1E-15 T 12-10-2018 ALFP_3598 c6a4421bdd9fcf4ea6dc0d7079461fd3 815 Pfam PF17092 Penicillin-binding protein OB-like domain 340 448 5.1E-13 T 12-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_3598 c6a4421bdd9fcf4ea6dc0d7079461fd3 815 SUPERFAMILY SSF56601 231 763 9.82E-116 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like ALFP_0851 06c0537e7043b71fbbba7de69c673702 312 Gene3D G3DSA:3.40.190.10 114 237 1.1E-116 T 12-10-2018 ALFP_0851 06c0537e7043b71fbbba7de69c673702 312 PIRSF PIRSF017082 1 311 3.2E-83 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0851 06c0537e7043b71fbbba7de69c673702 312 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 34 308 1.4E-82 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0851 06c0537e7043b71fbbba7de69c673702 312 Gene3D G3DSA:3.40.190.150 14 297 1.1E-116 T 12-10-2018 ALFP_0851 06c0537e7043b71fbbba7de69c673702 312 SUPERFAMILY SSF53850 100 276 1.27E-9 T 12-10-2018 ALFP_0412 1536fb9b17c7c777746ebd0eac9f8251 307 Gene3D G3DSA:3.10.310.10 16 290 7.2E-91 T 12-10-2018 ALFP_0412 1536fb9b17c7c777746ebd0eac9f8251 307 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 77 91 - T 12-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 ALFP_0412 1536fb9b17c7c777746ebd0eac9f8251 307 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 15 292 1.5E-80 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 ALFP_0412 1536fb9b17c7c777746ebd0eac9f8251 307 Gene3D G3DSA:3.10.310.10 128 281 7.2E-91 T 12-10-2018 ALFP_0412 1536fb9b17c7c777746ebd0eac9f8251 307 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 14 294 35.732 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 ALFP_0412 1536fb9b17c7c777746ebd0eac9f8251 307 SUPERFAMILY SSF54506 170 293 9.68E-44 T 12-10-2018 ALFP_0412 1536fb9b17c7c777746ebd0eac9f8251 307 Pfam PF01678 Diaminopimelate epimerase 175 286 6.8E-25 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 ALFP_0412 1536fb9b17c7c777746ebd0eac9f8251 307 Pfam PF01678 Diaminopimelate epimerase 16 135 8.5E-31 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 ALFP_0412 1536fb9b17c7c777746ebd0eac9f8251 307 SUPERFAMILY SSF54506 15 141 8.75E-40 T 12-10-2018 ALFP_2326 4bd2396fe61e605b0451687d41af1ba8 240 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 15 239 37.402 T 12-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 ALFP_2326 4bd2396fe61e605b0451687d41af1ba8 240 SUPERFAMILY SSF53335 17 220 1.38E-48 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_2326 4bd2396fe61e605b0451687d41af1ba8 240 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 15 233 7.5E-85 T 12-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 ALFP_2326 4bd2396fe61e605b0451687d41af1ba8 240 Pfam PF13489 Methyltransferase domain 55 206 1.2E-23 T 12-10-2018 ALFP_2326 4bd2396fe61e605b0451687d41af1ba8 240 Gene3D G3DSA:3.40.50.150 15 239 2.1E-74 T 12-10-2018 ALFP_1054 ab1bb3748d4b33023e27ae2cadc02e92 684 SUPERFAMILY SSF52540 16 620 7.04E-25 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1054 ab1bb3748d4b33023e27ae2cadc02e92 684 Gene3D G3DSA:3.40.50.300 469 664 6.4E-37 T 12-10-2018 ALFP_1054 ab1bb3748d4b33023e27ae2cadc02e92 684 SMART SM00491 503 633 2.2E-36 T 12-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 ALFP_1054 ab1bb3748d4b33023e27ae2cadc02e92 684 Pfam PF13307 Helicase C-terminal domain 484 646 4.2E-35 T 12-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 ALFP_1054 ab1bb3748d4b33023e27ae2cadc02e92 684 SUPERFAMILY SSF52540 474 623 1.39E-9 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1054 ab1bb3748d4b33023e27ae2cadc02e92 684 Gene3D G3DSA:3.40.50.300 23 293 5.1E-45 T 12-10-2018 ALFP_1054 ab1bb3748d4b33023e27ae2cadc02e92 684 SMART SM00487 21 284 0.0061 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain ALFP_1423 20b63926d6037f421173df6a1d7aed27 385 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 97 107 4.2E-5 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_1423 20b63926d6037f421173df6a1d7aed27 385 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 32 48 4.2E-5 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_1423 20b63926d6037f421173df6a1d7aed27 385 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 262 280 4.2E-5 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_1423 20b63926d6037f421173df6a1d7aed27 385 SUPERFAMILY SSF53822 31 378 3.61E-88 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_1423 20b63926d6037f421173df6a1d7aed27 385 Gene3D G3DSA:3.40.50.2300 152 280 1.2E-93 T 12-10-2018 ALFP_1423 20b63926d6037f421173df6a1d7aed27 385 Gene3D G3DSA:3.40.50.2300 33 347 1.2E-93 T 12-10-2018 ALFP_1423 20b63926d6037f421173df6a1d7aed27 385 Pfam PF13458 Periplasmic binding protein 32 373 3.1E-60 T 12-10-2018 IPR028081 Leucine-binding protein domain ALFP_3170 e0a7a40b3fe1e2ae0cece32cb2639ed1 321 SUPERFAMILY SSF48576 6 320 8.8E-98 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily ALFP_3170 e0a7a40b3fe1e2ae0cece32cb2639ed1 321 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site ALFP_3170 e0a7a40b3fe1e2ae0cece32cb2639ed1 321 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site ALFP_3170 e0a7a40b3fe1e2ae0cece32cb2639ed1 321 Pfam PF00348 Polyprenyl synthetase 32 275 2.2E-76 T 12-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 ALFP_3170 e0a7a40b3fe1e2ae0cece32cb2639ed1 321 Gene3D G3DSA:1.10.600.10 1 321 2.1E-111 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily ALFP_0690 1bd5d5bfdaa578ff0b0874debe805dbb 140 SUPERFAMILY SSF54637 1 113 2.93E-29 T 12-10-2018 IPR029069 HotDog domain superfamily ALFP_0690 1bd5d5bfdaa578ff0b0874debe805dbb 140 Gene3D G3DSA:3.10.129.10 1 137 4.1E-29 T 12-10-2018 ALFP_0690 1bd5d5bfdaa578ff0b0874debe805dbb 140 Pfam PF03061 Thioesterase superfamily 19 104 2.2E-8 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 ALFP_0752 6bcdf3500b34197dd4fcfa2ed44651b6 148 Gene3D G3DSA:3.10.129.10 1 145 4.4E-37 T 12-10-2018 ALFP_0752 6bcdf3500b34197dd4fcfa2ed44651b6 148 SUPERFAMILY SSF54637 2 142 7.84E-31 T 12-10-2018 IPR029069 HotDog domain superfamily ALFP_0752 6bcdf3500b34197dd4fcfa2ed44651b6 148 Pfam PF01575 MaoC like domain 13 109 1.7E-11 T 12-10-2018 IPR002539 MaoC-like dehydratase domain ALFP_1000 644c15b590556be136e5d212aa375f23 337 Pfam PF13410 Glutathione S-transferase, C-terminal domain 202 273 3.1E-11 T 12-10-2018 ALFP_1000 644c15b590556be136e5d212aa375f23 337 Pfam PF13409 Glutathione S-transferase, N-terminal domain 62 157 2.8E-21 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 ALFP_1000 644c15b590556be136e5d212aa375f23 337 Gene3D G3DSA:3.40.30.130 22 316 4.6E-133 T 12-10-2018 ALFP_1000 644c15b590556be136e5d212aa375f23 337 PIRSF PIRSF015753 4 323 1.3E-128 T 12-10-2018 IPR016639 Glutathione S-transferase Omega/GSH GO:0004364 ALFP_1000 644c15b590556be136e5d212aa375f23 337 SUPERFAMILY SSF47616 177 323 1.09E-32 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily ALFP_1000 644c15b590556be136e5d212aa375f23 337 SUPERFAMILY SSF52833 41 161 1.23E-13 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_1000 644c15b590556be136e5d212aa375f23 337 Gene3D G3DSA:1.20.1050.10 173 283 4.6E-133 T 12-10-2018 ALFP_3318 40f2b6b235806b3c56da1d4919eacf9f 168 Pfam PF08281 Sigma-70, region 4 106 158 2.3E-16 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ALFP_3318 40f2b6b235806b3c56da1d4919eacf9f 168 Gene3D G3DSA:1.10.10.10 80 165 2.2E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3318 40f2b6b235806b3c56da1d4919eacf9f 168 SUPERFAMILY SSF88946 12 93 7.06E-10 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_3318 40f2b6b235806b3c56da1d4919eacf9f 168 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 162 1.7E-26 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 ALFP_3318 40f2b6b235806b3c56da1d4919eacf9f 168 Pfam PF04542 Sigma-70 region 2 14 75 6.0E-6 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_3318 40f2b6b235806b3c56da1d4919eacf9f 168 SUPERFAMILY SSF88659 90 165 7.48E-17 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like ALFP_2592 8bc4b80e5fe8a7eba6e97097c06da550 397 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 354 371 2.0E-6 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 ALFP_2592 8bc4b80e5fe8a7eba6e97097c06da550 397 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 108 118 2.0E-6 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 ALFP_2592 8bc4b80e5fe8a7eba6e97097c06da550 397 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 168 179 2.0E-6 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 ALFP_2592 8bc4b80e5fe8a7eba6e97097c06da550 397 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 213 225 2.0E-6 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 ALFP_2592 8bc4b80e5fe8a7eba6e97097c06da550 397 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 64 75 2.0E-6 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 ALFP_2592 8bc4b80e5fe8a7eba6e97097c06da550 397 SUPERFAMILY SSF56935 21 397 9.94E-67 T 12-10-2018 ALFP_2592 8bc4b80e5fe8a7eba6e97097c06da550 397 Pfam PF13609 Gram-negative porin 7 377 2.2E-51 T 12-10-2018 ALFP_2592 8bc4b80e5fe8a7eba6e97097c06da550 397 Gene3D G3DSA:2.40.160.10 11 397 7.4E-83 T 12-10-2018 IPR023614 Porin domain superfamily ALFP_2592 8bc4b80e5fe8a7eba6e97097c06da550 397 PRINTS PR00184 Neisseria sp. porin signature 167 184 1.6E-8 T 12-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 ALFP_2592 8bc4b80e5fe8a7eba6e97097c06da550 397 PRINTS PR00184 Neisseria sp. porin signature 66 91 1.6E-8 T 12-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 ALFP_2592 8bc4b80e5fe8a7eba6e97097c06da550 397 PRINTS PR00184 Neisseria sp. porin signature 351 375 1.6E-8 T 12-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 ALFP_2105 c999709d20ea7a5fcbb4f459948eab1a 139 Pfam PF02631 RecX family 19 133 5.4E-25 T 12-10-2018 IPR003783 Regulatory protein RecX GO:0006282 ALFP_2105 c999709d20ea7a5fcbb4f459948eab1a 139 Gene3D G3DSA:1.10.10.10 89 136 3.8E-11 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2105 c999709d20ea7a5fcbb4f459948eab1a 139 Gene3D G3DSA:1.10.10.10 1 40 6.1E-6 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2105 c999709d20ea7a5fcbb4f459948eab1a 139 Gene3D G3DSA:1.10.10.10 43 88 2.7E-7 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1435 125b7b04c3e0a49d362ca9fb9a43c49b 177 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 64 72 7.4E-18 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 ALFP_1435 125b7b04c3e0a49d362ca9fb9a43c49b 177 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 147 163 7.4E-18 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 ALFP_1435 125b7b04c3e0a49d362ca9fb9a43c49b 177 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 111 126 7.4E-18 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 ALFP_1435 125b7b04c3e0a49d362ca9fb9a43c49b 177 Pfam PF01252 Signal peptidase (SPase) II 27 166 2.1E-37 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 ALFP_1435 125b7b04c3e0a49d362ca9fb9a43c49b 177 ProSitePatterns PS00855 Signal peptidases II signature. 114 126 - T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 ALFP_1435 125b7b04c3e0a49d362ca9fb9a43c49b 177 TIGRFAM TIGR00077 lspA: signal peptidase II 17 174 2.8E-39 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 ALFP_1435 125b7b04c3e0a49d362ca9fb9a43c49b 177 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 18 172 16.372 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 ALFP_2239 0be28c7a3d7e59c20bc9b6f05e2dc025 98 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 1 98 2.4E-29 T 12-10-2018 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 ALFP_2239 0be28c7a3d7e59c20bc9b6f05e2dc025 98 Gene3D G3DSA:2.60.40.180 1 98 2.8E-28 T 12-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 ALFP_2239 0be28c7a3d7e59c20bc9b6f05e2dc025 98 Pfam PF00576 HIUase/Transthyretin family 1 97 5.6E-25 T 12-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 ALFP_2239 0be28c7a3d7e59c20bc9b6f05e2dc025 98 SUPERFAMILY SSF49472 1 98 6.15E-30 T 12-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 ALFP_1151 65b266c321feace66b06d2c26cfb3904 254 SMART SM00895 100 229 2.9E-22 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_1151 65b266c321feace66b06d2c26cfb3904 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 2.8E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1151 65b266c321feace66b06d2c26cfb3904 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 2.8E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1151 65b266c321feace66b06d2c26cfb3904 254 SUPERFAMILY SSF46785 13 78 1.69E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1151 65b266c321feace66b06d2c26cfb3904 254 Gene3D G3DSA:1.20.120.530 82 246 1.8E-29 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_1151 65b266c321feace66b06d2c26cfb3904 254 SUPERFAMILY SSF48008 98 236 1.05E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_1151 65b266c321feace66b06d2c26cfb3904 254 Pfam PF07729 FCD domain 100 228 4.6E-24 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_1151 65b266c321feace66b06d2c26cfb3904 254 SMART SM00345 16 75 2.5E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1151 65b266c321feace66b06d2c26cfb3904 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 4.2E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1151 65b266c321feace66b06d2c26cfb3904 254 Gene3D G3DSA:1.10.10.10 8 81 3.2E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1116 891b51ba2556784b9127b21c08396de6 286 Pfam PF00494 Squalene/phytoene synthase 5 269 7.8E-55 T 12-10-2018 ALFP_1116 891b51ba2556784b9127b21c08396de6 286 SUPERFAMILY SSF48576 5 282 2.16E-64 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily ALFP_1116 891b51ba2556784b9127b21c08396de6 286 Gene3D G3DSA:1.10.600.10 1 260 5.6E-69 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily ALFP_1116 891b51ba2556784b9127b21c08396de6 286 TIGRFAM TIGR03464 HpnC: squalene synthase HpnC 2 279 1.2E-96 T 12-10-2018 IPR017827 Hydroxysqualene synthase HpnC MetaCyc: PWY-7072 ALFP_1675 2ae6b95879e1af459f499a5b44271a94 248 PIRSF PIRSF006324 42 247 2.8E-51 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 ALFP_1675 2ae6b95879e1af459f499a5b44271a94 248 Pfam PF01810 LysE type translocator 57 244 6.7E-29 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 ALFP_2728 a11b08d1d7aa53ad19b9322087aea197 164 Gene3D G3DSA:3.90.1150.10 61 160 2.5E-51 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_2728 a11b08d1d7aa53ad19b9322087aea197 164 Pfam PF00266 Aminotransferase class-V 28 152 4.2E-11 T 12-10-2018 IPR000192 Aminotransferase class V domain ALFP_2728 a11b08d1d7aa53ad19b9322087aea197 164 Gene3D G3DSA:3.40.640.10 1 60 2.5E-51 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2728 a11b08d1d7aa53ad19b9322087aea197 164 SUPERFAMILY SSF53383 1 161 7.09E-40 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_3334 c73ad139519f5a199b488d30d5bed2bf 139 SMART SM00530 69 124 1.7E-6 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_3334 c73ad139519f5a199b488d30d5bed2bf 139 Pfam PF13560 Helix-turn-helix domain 69 125 3.7E-8 T 12-10-2018 ALFP_3334 c73ad139519f5a199b488d30d5bed2bf 139 Gene3D G3DSA:1.10.260.40 68 133 2.4E-6 T 12-10-2018 ALFP_3334 c73ad139519f5a199b488d30d5bed2bf 139 SUPERFAMILY SSF47413 60 124 1.21E-8 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_3645 c68e59713843e9c2d75f394212d38612 190 Pfam PF16036 Chalcone isomerase-like 22 188 1.9E-46 T 12-10-2018 IPR016087 Chalcone isomerase GO:0016872 ALFP_3645 c68e59713843e9c2d75f394212d38612 190 Gene3D G3DSA:3.50.70.10 24 172 3.9E-20 T 12-10-2018 IPR016088 Chalcone isomerase, 3-layer sandwich KEGG: 00941+5.5.1.6|MetaCyc: PWY-2002|MetaCyc: PWY-5059|MetaCyc: PWY-6325|MetaCyc: PWY-6787|MetaCyc: PWY-7397|MetaCyc: PWY-7897 ALFP_3645 c68e59713843e9c2d75f394212d38612 190 SUPERFAMILY SSF54626 22 187 8.63E-19 T 12-10-2018 IPR036298 Chalcone isomerase superfamily GO:0016872 ALFP_2787 6a637f9eb8168cf8ed0265d795169d62 196 Gene3D G3DSA:2.20.70.10 15 50 4.2E-15 T 12-10-2018 ALFP_2787 6a637f9eb8168cf8ed0265d795169d62 196 Pfam PF00293 NUDIX domain 53 157 2.2E-15 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 ALFP_2787 6a637f9eb8168cf8ed0265d795169d62 196 Pfam PF14803 Nudix N-terminal 17 50 5.1E-16 T 12-10-2018 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.13|KEGG: 00740+3.6.1.18 ALFP_2787 6a637f9eb8168cf8ed0265d795169d62 196 SUPERFAMILY SSF55811 17 179 7.72E-41 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 ALFP_2787 6a637f9eb8168cf8ed0265d795169d62 196 ProSitePatterns PS00893 Nudix box signature. 86 107 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 ALFP_2787 6a637f9eb8168cf8ed0265d795169d62 196 Gene3D G3DSA:3.90.79.10 51 195 1.1E-36 T 12-10-2018 ALFP_0239 1261b28ff8df0394c2c27850f8d400ba 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 417 1.1E-92 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_0239 1261b28ff8df0394c2c27850f8d400ba 427 PIRSF PIRSF006066 1 427 5.6E-94 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_0239 1261b28ff8df0394c2c27850f8d400ba 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 423 2.8E-99 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_0035 a664da8563dab8eb5aadd2db324df20a 279 SMART SM01007 47 229 2.5E-48 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal ALFP_0035 a664da8563dab8eb5aadd2db324df20a 279 SUPERFAMILY SSF53639 43 247 4.51E-50 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily ALFP_0035 a664da8563dab8eb5aadd2db324df20a 279 Gene3D G3DSA:3.40.225.10 28 279 8.0E-66 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily ALFP_0035 a664da8563dab8eb5aadd2db324df20a 279 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 47 229 5.6E-39 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal ALFP_1930 f9327bf4e813288edd7901ee1b55f504 153 SUPERFAMILY SSF55729 3 146 8.27E-27 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_1930 f9327bf4e813288edd7901ee1b55f504 153 Gene3D G3DSA:3.40.630.30 6 153 1.1E-38 T 12-10-2018 ALFP_1930 f9327bf4e813288edd7901ee1b55f504 153 Pfam PF00583 Acetyltransferase (GNAT) family 39 142 4.6E-16 T 12-10-2018 IPR000182 GNAT domain ALFP_1883 eef60f6793bfe501a4f5d1746feba56e 321 SUPERFAMILY SSF53850 88 296 6.27E-40 T 12-10-2018 ALFP_1883 eef60f6793bfe501a4f5d1746feba56e 321 SUPERFAMILY SSF46785 1 86 1.05E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1883 eef60f6793bfe501a4f5d1746feba56e 321 Gene3D G3DSA:3.40.190.10 161 271 4.4E-76 T 12-10-2018 ALFP_1883 eef60f6793bfe501a4f5d1746feba56e 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.8E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1883 eef60f6793bfe501a4f5d1746feba56e 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.8E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1883 eef60f6793bfe501a4f5d1746feba56e 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.8E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1883 eef60f6793bfe501a4f5d1746feba56e 321 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 3.9E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1883 eef60f6793bfe501a4f5d1746feba56e 321 Gene3D G3DSA:3.40.190.10 92 293 4.4E-76 T 12-10-2018 ALFP_1883 eef60f6793bfe501a4f5d1746feba56e 321 Pfam PF03466 LysR substrate binding domain 87 294 4.0E-47 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1883 eef60f6793bfe501a4f5d1746feba56e 321 Gene3D G3DSA:1.10.10.10 1 85 6.5E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3359 e7972a60451d0cf42e703df2a810d284 334 SUPERFAMILY SSF53850 109 318 8.53E-31 T 12-10-2018 ALFP_3359 e7972a60451d0cf42e703df2a810d284 334 Gene3D G3DSA:3.40.190.10 187 287 1.5E-37 T 12-10-2018 ALFP_3359 e7972a60451d0cf42e703df2a810d284 334 SUPERFAMILY SSF46785 18 131 3.97E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3359 e7972a60451d0cf42e703df2a810d284 334 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 24 83 1.4E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3359 e7972a60451d0cf42e703df2a810d284 334 Gene3D G3DSA:3.40.190.10 114 186 1.5E-37 T 12-10-2018 ALFP_3359 e7972a60451d0cf42e703df2a810d284 334 Pfam PF03466 LysR substrate binding domain 108 315 4.3E-32 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_3359 e7972a60451d0cf42e703df2a810d284 334 Gene3D G3DSA:1.10.10.10 22 109 1.5E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0576 1e184b0dedc89f4e1d8fbb1ab37da077 409 Gene3D G3DSA:3.50.50.60 9 396 7.2E-118 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0576 1e184b0dedc89f4e1d8fbb1ab37da077 409 Gene3D G3DSA:1.10.8.260 266 330 7.2E-118 T 12-10-2018 IPR023166 HI0933-like insert domain superfamily ALFP_0576 1e184b0dedc89f4e1d8fbb1ab37da077 409 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 156 165 1.1E-8 T 12-10-2018 ALFP_0576 1e184b0dedc89f4e1d8fbb1ab37da077 409 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 322 329 1.1E-8 T 12-10-2018 ALFP_0576 1e184b0dedc89f4e1d8fbb1ab37da077 409 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.1E-8 T 12-10-2018 ALFP_0576 1e184b0dedc89f4e1d8fbb1ab37da077 409 Pfam PF03486 HI0933-like protein 5 400 2.1E-133 T 12-10-2018 ALFP_0576 1e184b0dedc89f4e1d8fbb1ab37da077 409 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 7 399 2.5E-116 T 12-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like ALFP_0576 1e184b0dedc89f4e1d8fbb1ab37da077 409 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 318 334 1.8E-6 T 12-10-2018 ALFP_0576 1e184b0dedc89f4e1d8fbb1ab37da077 409 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 355 377 1.8E-6 T 12-10-2018 ALFP_0576 1e184b0dedc89f4e1d8fbb1ab37da077 409 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.8E-6 T 12-10-2018 ALFP_0576 1e184b0dedc89f4e1d8fbb1ab37da077 409 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 1.8E-6 T 12-10-2018 ALFP_0576 1e184b0dedc89f4e1d8fbb1ab37da077 409 SUPERFAMILY SSF160996 190 347 2.22E-35 T 12-10-2018 ALFP_0576 1e184b0dedc89f4e1d8fbb1ab37da077 409 SUPERFAMILY SSF51905 5 402 1.08E-49 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0576 1e184b0dedc89f4e1d8fbb1ab37da077 409 Gene3D G3DSA:2.40.30.10 189 347 7.2E-118 T 12-10-2018 ALFP_2620 15230ab6dea3b50a760c23631a1a4029 298 Pfam PF07848 PaaX-like protein 28 91 9.5E-13 T 12-10-2018 IPR012906 PaaX-like, N-terminal ALFP_2620 15230ab6dea3b50a760c23631a1a4029 298 Pfam PF08223 PaaX-like protein C-terminal domain 187 286 4.4E-26 T 12-10-2018 IPR013225 PaaX-like, C-terminal ALFP_2620 15230ab6dea3b50a760c23631a1a4029 298 Gene3D G3DSA:1.10.10.10 23 105 3.7E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2620 15230ab6dea3b50a760c23631a1a4029 298 PIRSF PIRSF020623 4 296 1.3E-66 T 12-10-2018 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 ALFP_2222 b4b26fedc1274b61a65d80a9cf977a18 360 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 4 356 54.739 T 12-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 ALFP_2222 b4b26fedc1274b61a65d80a9cf977a18 360 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 212 221 - T 12-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 ALFP_2222 b4b26fedc1274b61a65d80a9cf977a18 360 SUPERFAMILY SSF53383 4 356 1.03E-77 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2222 b4b26fedc1274b61a65d80a9cf977a18 360 Gene3D G3DSA:3.40.640.10 38 264 3.8E-104 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2222 b4b26fedc1274b61a65d80a9cf977a18 360 Gene3D G3DSA:3.90.1150.10 23 345 3.8E-104 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_2222 b4b26fedc1274b61a65d80a9cf977a18 360 Pfam PF00155 Aminotransferase class I and II 25 352 1.4E-60 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_2222 b4b26fedc1274b61a65d80a9cf977a18 360 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 7 355 8.2E-93 T 12-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 376 433 6.0E-13 T 12-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 Gene3D G3DSA:3.30.310.50 373 444 1.0E-19 T 12-10-2018 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 Gene3D G3DSA:3.40.120.10 3 158 2.9E-50 T 12-10-2018 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 Gene3D G3DSA:3.40.120.10 178 365 1.0E-64 T 12-10-2018 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 SUPERFAMILY SSF53738 160 260 1.18E-30 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 SUPERFAMILY SSF55957 360 440 1.28E-19 T 12-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 SUPERFAMILY SSF53738 2 185 3.49E-50 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 262 369 5.2E-32 T 12-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 SUPERFAMILY SSF53738 262 368 6.67E-32 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 161 258 5.7E-20 T 12-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 7 441 9.5E-179 T 12-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 100 109 - T 12-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 Gene3D G3DSA:3.40.120.10 261 342 1.0E-64 T 12-10-2018 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 139 5.3E-45 T 12-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 3 447 45.729 T 12-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 99 113 1.5E-13 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 238 253 1.5E-13 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_0899 074f958355eb3bba888823c60c4f73cc 447 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 178 197 1.5E-13 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 Gene3D G3DSA:3.40.50.10050 812 919 8.4E-37 T 12-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 SUPERFAMILY SSF52156 797 925 4.32E-36 T 12-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 SUPERFAMILY SSF50447 920 1016 1.66E-30 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 523 678 4.9E-32 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 Gene3D G3DSA:3.30.56.50 3 51 2.5E-5 T 12-10-2018 ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 SUPERFAMILY SSF52540 514 689 1.0E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 Pfam PF00009 Elongation factor Tu GTP binding domain 524 679 4.4E-35 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 Pfam PF11987 Translation-initiation factor 2 804 908 9.9E-36 T 12-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 ProSitePatterns PS01176 Initiation factor 2 signature. 969 991 - T 12-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 SUPERFAMILY SSF46955 4 51 2.56E-9 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 SUPERFAMILY SSF50447 692 774 5.41E-25 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 51 4.1E-9 T 12-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 442 493 1.1E-15 T 12-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 Gene3D G3DSA:3.40.50.300 516 690 2.4E-71 T 12-10-2018 ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 60 97 2.8E-14 T 12-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 436 1018 5.9E-253 T 12-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 Gene3D G3DSA:2.40.30.10 920 1017 2.9E-29 T 12-10-2018 ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 1016 17.308 T 12-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 ALFP_1076 5a074437bab7fd57b186377d8715d9ef 1018 Gene3D G3DSA:2.40.30.10 691 809 4.4E-38 T 12-10-2018 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 SUPERFAMILY SSF82693 135 323 4.88E-22 T 12-10-2018 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 Gene3D G3DSA:1.20.1640.10 10 501 0.0 T 12-10-2018 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 SUPERFAMILY SSF82693 554 649 9.42E-23 T 12-10-2018 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 SUPERFAMILY SSF82714 700 785 1.22E-18 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 Gene3D G3DSA:3.30.70.1430 556 648 0.0 T 12-10-2018 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 Gene3D G3DSA:3.30.70.1320 134 325 0.0 T 12-10-2018 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 PRINTS PR00702 Acriflavin resistance protein family signature 604 618 1.2E-80 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.2E-80 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 1.2E-80 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.2E-80 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 1.2E-80 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 1.2E-80 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 1.2E-80 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 PRINTS PR00702 Acriflavin resistance protein family signature 541 558 1.2E-80 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 1.2E-80 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 SUPERFAMILY SSF82866 786 1008 3.92E-49 T 12-10-2018 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 SUPERFAMILY SSF82866 291 490 2.49E-50 T 12-10-2018 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 Gene3D G3DSA:1.20.1640.10 502 1001 0.0 T 12-10-2018 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 SUPERFAMILY SSF82693 40 134 3.66E-26 T 12-10-2018 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 Gene3D G3DSA:3.30.70.1430 40 795 0.0 T 12-10-2018 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 Gene3D G3DSA:3.30.2090.10 699 787 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 Gene3D G3DSA:3.30.70.1440 649 844 0.0 T 12-10-2018 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 Pfam PF00873 AcrB/AcrD/AcrF family 4 1004 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 SUPERFAMILY SSF82714 182 264 1.31E-18 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_2966 b511cb07ac8236a365223449eae64f36 1025 Gene3D G3DSA:3.30.2090.10 178 268 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains ALFP_2662 6d72ea43f9edcb978e1d04330e5aa8c9 263 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 1 262 34.136 T 12-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 ALFP_2662 6d72ea43f9edcb978e1d04330e5aa8c9 263 SUPERFAMILY SSF55347 124 233 6.54E-35 T 12-10-2018 ALFP_2662 6d72ea43f9edcb978e1d04330e5aa8c9 263 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 125 261 9.6E-43 T 12-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 ALFP_2662 6d72ea43f9edcb978e1d04330e5aa8c9 263 Gene3D G3DSA:3.30.360.10 124 231 2.0E-100 T 12-10-2018 ALFP_2662 6d72ea43f9edcb978e1d04330e5aa8c9 263 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 1 262 4.9E-91 T 12-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 ALFP_2662 6d72ea43f9edcb978e1d04330e5aa8c9 263 PIRSF PIRSF000161 1 263 1.4E-84 T 12-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 ALFP_2662 6d72ea43f9edcb978e1d04330e5aa8c9 263 SUPERFAMILY SSF51735 1 263 3.51E-46 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2662 6d72ea43f9edcb978e1d04330e5aa8c9 263 Gene3D G3DSA:3.40.50.720 2 260 2.0E-100 T 12-10-2018 ALFP_2662 6d72ea43f9edcb978e1d04330e5aa8c9 263 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 147 164 - T 12-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 ALFP_2662 6d72ea43f9edcb978e1d04330e5aa8c9 263 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 1 122 5.0E-39 T 12-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 ALFP_1123 c489005552735260ea575ee566a3efa8 376 SUPERFAMILY SSF50331 252 374 2.15E-15 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal ALFP_1123 c489005552735260ea575ee566a3efa8 376 Pfam PF00005 ABC transporter 35 176 6.5E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1123 c489005552735260ea575ee566a3efa8 376 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 49 374 4.6E-121 T 12-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 ALFP_1123 c489005552735260ea575ee566a3efa8 376 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1123 c489005552735260ea575ee566a3efa8 376 Gene3D G3DSA:2.40.50.940 237 300 2.5E-10 T 12-10-2018 ALFP_1123 c489005552735260ea575ee566a3efa8 376 SMART SM00382 43 232 1.7E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1123 c489005552735260ea575ee566a3efa8 376 SUPERFAMILY SSF52540 19 257 6.08E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1123 c489005552735260ea575ee566a3efa8 376 Gene3D G3DSA:3.40.50.300 19 236 2.6E-66 T 12-10-2018 ALFP_1123 c489005552735260ea575ee566a3efa8 376 Gene3D G3DSA:2.40.50.140 301 338 2.5E-10 T 12-10-2018 ALFP_1123 c489005552735260ea575ee566a3efa8 376 Pfam PF08402 TOBE domain 294 374 5.6E-16 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 ALFP_2776 7acc510d6f3cef5c80ce2a22a8255789 119 SUPERFAMILY SSF54523 38 111 5.89E-9 T 12-10-2018 ALFP_2776 7acc510d6f3cef5c80ce2a22a8255789 119 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 4 24 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site ALFP_2776 7acc510d6f3cef5c80ce2a22a8255789 119 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 25 3.2E-6 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site ALFP_2776 7acc510d6f3cef5c80ce2a22a8255789 119 TIGRFAM TIGR01707 gspI: type II secretion system protein I 5 104 2.6E-14 T 12-10-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 ALFP_2776 7acc510d6f3cef5c80ce2a22a8255789 119 Gene3D G3DSA:3.30.1300.30 33 117 1.3E-6 T 12-10-2018 ALFP_2776 7acc510d6f3cef5c80ce2a22a8255789 119 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 26 2.3E-7 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site ALFP_2776 7acc510d6f3cef5c80ce2a22a8255789 119 Pfam PF02501 Type II secretion system (T2SS), protein I 39 111 2.9E-11 T 12-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 ALFP_3270 7be317b9e9db47ddf5827178c1ff9d05 439 Gene3D G3DSA:3.80.30.20 135 376 2.5E-70 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe ALFP_3270 7be317b9e9db47ddf5827178c1ff9d05 439 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 141 161 - T 12-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 ALFP_3270 7be317b9e9db47ddf5827178c1ff9d05 439 Gene3D G3DSA:3.40.50.12160 5 124 4.5E-27 T 12-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily ALFP_3270 7be317b9e9db47ddf5827178c1ff9d05 439 SUPERFAMILY SSF102114 120 367 1.15E-48 T 12-10-2018 ALFP_3270 7be317b9e9db47ddf5827178c1ff9d05 439 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 5 436 1.3E-173 T 12-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 ALFP_3270 7be317b9e9db47ddf5827178c1ff9d05 439 Pfam PF00919 Uncharacterized protein family UPF0004 5 81 6.8E-20 T 12-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 ALFP_3270 7be317b9e9db47ddf5827178c1ff9d05 439 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 4 438 61.039 T 12-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 ALFP_3270 7be317b9e9db47ddf5827178c1ff9d05 439 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 5 436 4.6E-102 T 12-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 ALFP_3270 7be317b9e9db47ddf5827178c1ff9d05 439 Pfam PF01938 TRAM domain 375 437 2.9E-7 T 12-10-2018 IPR002792 TRAM domain ALFP_3270 7be317b9e9db47ddf5827178c1ff9d05 439 Gene3D G3DSA:2.40.50.140 377 439 1.1E-19 T 12-10-2018 ALFP_3270 7be317b9e9db47ddf5827178c1ff9d05 439 SMART SM00729 137 362 1.5E-51 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 ALFP_3270 7be317b9e9db47ddf5827178c1ff9d05 439 Pfam PF04055 Radical SAM superfamily 143 319 4.3E-25 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 ALFP_2459 5172f45700954322d431afbcf2325a8a 139 Gene3D G3DSA:3.10.50.40 13 136 1.0E-32 T 12-10-2018 ALFP_2459 5172f45700954322d431afbcf2325a8a 139 SUPERFAMILY SSF54534 2 138 1.79E-25 T 12-10-2018 ALFP_2459 5172f45700954322d431afbcf2325a8a 139 Gene3D G3DSA:2.40.10.330 64 124 1.0E-32 T 12-10-2018 ALFP_2459 5172f45700954322d431afbcf2325a8a 139 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 2 71 5.3E-9 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain ALFP_0694 77c14201d299163a2da7ad47ade6c010 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 1.4E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_0694 77c14201d299163a2da7ad47ade6c010 203 SUPERFAMILY SSF48498 87 198 8.53E-6 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily ALFP_0694 77c14201d299163a2da7ad47ade6c010 203 Gene3D G3DSA:1.10.357.10 63 202 4.8E-10 T 12-10-2018 ALFP_0694 77c14201d299163a2da7ad47ade6c010 203 SUPERFAMILY SSF46689 10 92 4.0E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0694 77c14201d299163a2da7ad47ade6c010 203 Gene3D G3DSA:1.10.10.60 2 62 8.4E-13 T 12-10-2018 ALFP_0694 77c14201d299163a2da7ad47ade6c010 203 ProSitePatterns PS01081 TetR-type HTH domain signature. 32 62 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site ALFP_3333 7f81a7d39e22c1caad742d83badc723e 316 Pfam PF00795 Carbon-nitrogen hydrolase 3 278 2.2E-48 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 ALFP_3333 7f81a7d39e22c1caad742d83badc723e 316 SUPERFAMILY SSF56317 3 300 8.5E-69 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily ALFP_3333 7f81a7d39e22c1caad742d83badc723e 316 Gene3D G3DSA:3.60.110.10 1 285 6.9E-90 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily ALFP_2093 574a8960b54be38141550cfb2380c407 178 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 173 33.442 T 12-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 ALFP_2093 574a8960b54be38141550cfb2380c407 178 Pfam PF00719 Inorganic pyrophosphatase 18 171 9.7E-50 T 12-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 ALFP_2093 574a8960b54be38141550cfb2380c407 178 SUPERFAMILY SSF50324 4 173 8.5E-63 T 12-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 ALFP_2093 574a8960b54be38141550cfb2380c407 178 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 65 71 - T 12-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 ALFP_2093 574a8960b54be38141550cfb2380c407 178 Gene3D G3DSA:3.90.80.10 1 174 7.7E-66 T 12-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 ALFP_0087 9739c16f20cc875650f7ca2741592d58 298 Pfam PF13557 Putative MetA-pathway of phenol degradation 63 293 4.9E-61 T 12-10-2018 IPR025737 MetA-pathway of phenol degradation, putative ALFP_1029 d064368625d75f66b8a849c2ef49c2e7 387 Gene3D G3DSA:1.10.230.10 235 333 4.2E-126 T 12-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain ALFP_1029 d064368625d75f66b8a849c2ef49c2e7 387 Pfam PF00285 Citrate synthase, C-terminal domain 20 369 1.5E-112 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 ALFP_1029 d064368625d75f66b8a849c2ef49c2e7 387 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 19 386 2.4E-155 T 12-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 ALFP_1029 d064368625d75f66b8a849c2ef49c2e7 387 SUPERFAMILY SSF48256 20 386 8.77E-123 T 12-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 ALFP_1029 d064368625d75f66b8a849c2ef49c2e7 387 ProSitePatterns PS00480 Citrate synthase signature. 269 281 - T 12-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 ALFP_1029 d064368625d75f66b8a849c2ef49c2e7 387 Gene3D G3DSA:1.10.580.10 40 366 4.2E-126 T 12-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 ALFP_1029 d064368625d75f66b8a849c2ef49c2e7 387 PRINTS PR00143 Citrate synthase signature 262 282 3.4E-34 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 ALFP_1029 d064368625d75f66b8a849c2ef49c2e7 387 PRINTS PR00143 Citrate synthase signature 339 353 3.4E-34 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 ALFP_1029 d064368625d75f66b8a849c2ef49c2e7 387 PRINTS PR00143 Citrate synthase signature 187 202 3.4E-34 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 ALFP_1029 d064368625d75f66b8a849c2ef49c2e7 387 PRINTS PR00143 Citrate synthase signature 209 237 3.4E-34 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 ALFP_1029 d064368625d75f66b8a849c2ef49c2e7 387 PRINTS PR00143 Citrate synthase signature 319 335 3.4E-34 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 ALFP_1029 d064368625d75f66b8a849c2ef49c2e7 387 PIRSF PIRSF001369 13 387 1.6E-109 T 12-10-2018 IPR024176 Citrate synthase, bacterial-type ALFP_2449 27a8d9180f32fc096f2407aea282e63e 156 SUPERFAMILY SSF75217 1 154 7.85E-48 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases ALFP_2449 27a8d9180f32fc096f2407aea282e63e 156 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 28.102 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 ALFP_2449 27a8d9180f32fc096f2407aea282e63e 156 PIRSF PIRSF004505 1 155 1.0E-44 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 ALFP_2449 27a8d9180f32fc096f2407aea282e63e 156 Gene3D G3DSA:3.40.1280.10 1 156 6.9E-50 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal ALFP_2449 27a8d9180f32fc096f2407aea282e63e 156 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 155 1.2E-45 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 ALFP_2449 27a8d9180f32fc096f2407aea282e63e 156 Pfam PF02590 Predicted SPOUT methyltransferase 1 154 1.1E-48 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 ALFP_0991 a724feb0a6ec1e592a72b320e507cb07 555 SUPERFAMILY SSF161098 297 548 2.29E-43 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0991 a724feb0a6ec1e592a72b320e507cb07 555 Gene3D G3DSA:1.10.3720.10 296 550 6.7E-41 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0991 a724feb0a6ec1e592a72b320e507cb07 555 Gene3D G3DSA:1.10.3720.10 14 285 8.2E-52 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0991 a724feb0a6ec1e592a72b320e507cb07 555 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 279 6.4E-10 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0991 a724feb0a6ec1e592a72b320e507cb07 555 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 387 547 7.5E-7 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0991 a724feb0a6ec1e592a72b320e507cb07 555 SUPERFAMILY SSF161098 14 277 9.35E-45 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1585 a546ba4851306258d38f364e4d4f09be 135 SMART SM00232 2 132 2.0E-9 T 12-10-2018 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 ALFP_1585 a546ba4851306258d38f364e4d4f09be 135 Gene3D G3DSA:3.40.140.10 2 135 3.6E-32 T 12-10-2018 ALFP_1585 a546ba4851306258d38f364e4d4f09be 135 Pfam PF14464 Prokaryotic homologs of the JAB domain 8 120 1.1E-20 T 12-10-2018 IPR028090 JAB domain, prokaryotic ALFP_1585 a546ba4851306258d38f364e4d4f09be 135 SUPERFAMILY SSF102712 2 131 4.58E-27 T 12-10-2018 ALFP_2020 4844cf2145197fb86bb799233790a311 290 Pfam PF01551 Peptidase family M23 187 281 3.5E-27 T 12-10-2018 IPR016047 Peptidase M23 ALFP_2020 4844cf2145197fb86bb799233790a311 290 Gene3D G3DSA:2.60.40.1590 36 132 4.2E-32 T 12-10-2018 ALFP_2020 4844cf2145197fb86bb799233790a311 290 Gene3D G3DSA:2.70.70.10 133 290 6.3E-56 T 12-10-2018 IPR011055 Duplicated hybrid motif ALFP_2020 4844cf2145197fb86bb799233790a311 290 SUPERFAMILY SSF51261 130 285 7.85E-50 T 12-10-2018 IPR011055 Duplicated hybrid motif ALFP_3479 183e34026d7f2921b3d5f411f6915db4 273 Gene3D G3DSA:3.20.20.60 9 273 5.5E-93 T 12-10-2018 ALFP_3479 183e34026d7f2921b3d5f411f6915db4 273 SUPERFAMILY SSF51621 10 269 1.1E-91 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 ALFP_3479 183e34026d7f2921b3d5f411f6915db4 273 Pfam PF02548 Ketopantoate hydroxymethyltransferase 10 264 4.2E-99 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 ALFP_3479 183e34026d7f2921b3d5f411f6915db4 273 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 10 269 38.648 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 ALFP_3479 183e34026d7f2921b3d5f411f6915db4 273 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 10 269 2.6E-90 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 ALFP_3479 183e34026d7f2921b3d5f411f6915db4 273 PIRSF PIRSF000388 1 272 4.6E-99 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 ALFP_3444 06dd50be420689ad6d8c1ef5372d8356 214 Pfam PF00355 Rieske [2Fe-2S] domain 125 193 1.8E-10 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ALFP_3444 06dd50be420689ad6d8c1ef5372d8356 214 PRINTS PR00162 Rieske 2Fe-2S subunit signature 133 144 2.5E-5 T 12-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 ALFP_3444 06dd50be420689ad6d8c1ef5372d8356 214 PRINTS PR00162 Rieske 2Fe-2S subunit signature 165 177 2.5E-5 T 12-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 ALFP_3444 06dd50be420689ad6d8c1ef5372d8356 214 Gene3D G3DSA:2.102.10.10 56 207 1.6E-48 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_3444 06dd50be420689ad6d8c1ef5372d8356 214 SUPERFAMILY SSF50022 43 205 2.12E-41 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_3444 06dd50be420689ad6d8c1ef5372d8356 214 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 23 204 4.4E-63 T 12-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 ALFP_2494 b12ab15a858b1dae272ded451b7c24aa 548 SUPERFAMILY SSF52540 3 271 7.97E-120 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2494 b12ab15a858b1dae272ded451b7c24aa 548 SUPERFAMILY SSF52317 293 546 9.32E-85 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_2494 b12ab15a858b1dae272ded451b7c24aa 548 Gene3D G3DSA:3.40.50.300 1 290 1.1E-129 T 12-10-2018 ALFP_2494 b12ab15a858b1dae272ded451b7c24aa 548 Gene3D G3DSA:3.40.50.880 291 548 5.4E-98 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_2494 b12ab15a858b1dae272ded451b7c24aa 548 Hamap MF_01227 CTP synthase [pyrG]. 3 544 50.349 T 12-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 ALFP_2494 b12ab15a858b1dae272ded451b7c24aa 548 TIGRFAM TIGR00337 PyrG: CTP synthase 2 539 2.7E-236 T 12-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 ALFP_2494 b12ab15a858b1dae272ded451b7c24aa 548 Pfam PF06418 CTP synthase N-terminus 4 271 3.6E-124 T 12-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 ALFP_2494 b12ab15a858b1dae272ded451b7c24aa 548 Pfam PF00117 Glutamine amidotransferase class-I 306 539 4.1E-53 T 12-10-2018 IPR017926 Glutamine amidotransferase ALFP_2894 ba35ebdc94a1d76b5ef71275bd67f83b 161 Pfam PF01029 NusB family 20 147 2.8E-27 T 12-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 ALFP_2894 ba35ebdc94a1d76b5ef71275bd67f83b 161 SUPERFAMILY SSF48013 16 151 1.24E-34 T 12-10-2018 IPR035926 NusB-like superfamily ALFP_2894 ba35ebdc94a1d76b5ef71275bd67f83b 161 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 18 149 2.4E-34 T 12-10-2018 IPR011605 NusB antitermination factor GO:0006353 ALFP_2894 ba35ebdc94a1d76b5ef71275bd67f83b 161 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 16 151 20.079 T 12-10-2018 IPR011605 NusB antitermination factor GO:0006353 ALFP_2894 ba35ebdc94a1d76b5ef71275bd67f83b 161 Gene3D G3DSA:1.10.940.10 12 155 8.9E-38 T 12-10-2018 IPR035926 NusB-like superfamily ALFP_3182 c679c3220409d27157bb28c75a213c01 282 Gene3D G3DSA:3.40.50.620 2 175 2.2E-69 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_3182 c679c3220409d27157bb28c75a213c01 282 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 2 277 6.5E-87 T 12-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 ALFP_3182 c679c3220409d27157bb28c75a213c01 282 Hamap MF_00158 Pantothenate synthetase [panC]. 2 279 36.631 T 12-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 ALFP_3182 c679c3220409d27157bb28c75a213c01 282 Gene3D G3DSA:3.30.1300.10 176 277 2.4E-32 T 12-10-2018 ALFP_3182 c679c3220409d27157bb28c75a213c01 282 SUPERFAMILY SSF52374 2 279 6.26E-93 T 12-10-2018 ALFP_3182 c679c3220409d27157bb28c75a213c01 282 Pfam PF02569 Pantoate-beta-alanine ligase 3 277 3.2E-95 T 12-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 ALFP_1365 be248872ea85007652d31807b3cdc1b7 379 Gene3D G3DSA:1.20.1250.20 2 376 2.1E-44 T 12-10-2018 ALFP_1365 be248872ea85007652d31807b3cdc1b7 379 SUPERFAMILY SSF103473 5 376 1.83E-50 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_1365 be248872ea85007652d31807b3cdc1b7 379 Pfam PF07690 Major Facilitator Superfamily 9 314 3.0E-29 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_1321 eb1896ffd3b573ea801e09c7f1a2ab47 544 Pfam PF00999 Sodium/hydrogen exchanger family 11 422 9.8E-60 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 ALFP_1321 eb1896ffd3b573ea801e09c7f1a2ab47 544 Gene3D G3DSA:1.20.1530.20 4 348 2.0E-8 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily ALFP_1321 eb1896ffd3b573ea801e09c7f1a2ab47 544 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 14 541 6.6E-101 T 12-10-2018 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 ALFP_2564 78549350f9685daa30b5543efc7cd50e 340 SMART SM00771 196 319 1.5E-15 T 12-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 ALFP_2564 78549350f9685daa30b5543efc7cd50e 340 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 251 314 4.0E-10 T 12-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 ALFP_2564 78549350f9685daa30b5543efc7cd50e 340 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 251 319 0.001 T 12-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 ALFP_2564 78549350f9685daa30b5543efc7cd50e 340 SUPERFAMILY SSF64383 200 323 7.06E-14 T 12-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 ALFP_2564 78549350f9685daa30b5543efc7cd50e 340 Gene3D G3DSA:3.30.1400.10 241 330 1.2E-8 T 12-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 ALFP_0866 83a60c4a3387d96e52da1517ca436f17 135 Gene3D G3DSA:3.10.450.50 9 135 3.3E-39 T 12-10-2018 ALFP_0866 83a60c4a3387d96e52da1517ca436f17 135 SUPERFAMILY SSF54427 13 125 1.89E-26 T 12-10-2018 IPR032710 NTF2-like domain superfamily ALFP_0866 83a60c4a3387d96e52da1517ca436f17 135 Pfam PF07366 SnoaL-like polyketide cyclase 19 124 7.6E-15 T 12-10-2018 IPR009959 Polyketide cyclase SnoaL-like GO:0030638 MetaCyc: PWY-7352|MetaCyc: PWY-7354 ALFP_1042 75825ddd21f88bae7348db28f90add61 259 SMART SM00895 101 231 9.1E-19 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_1042 75825ddd21f88bae7348db28f90add61 259 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 72 2.6E-22 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1042 75825ddd21f88bae7348db28f90add61 259 SMART SM00345 13 72 5.4E-24 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1042 75825ddd21f88bae7348db28f90add61 259 SUPERFAMILY SSF46785 3 76 4.6E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1042 75825ddd21f88bae7348db28f90add61 259 Gene3D G3DSA:1.10.10.10 1 73 1.1E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1042 75825ddd21f88bae7348db28f90add61 259 Pfam PF07729 FCD domain 101 230 3.8E-21 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_1042 75825ddd21f88bae7348db28f90add61 259 SUPERFAMILY SSF48008 100 237 3.66E-25 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_1042 75825ddd21f88bae7348db28f90add61 259 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 1.8E-10 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1042 75825ddd21f88bae7348db28f90add61 259 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 1.8E-10 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_1042 75825ddd21f88bae7348db28f90add61 259 Gene3D G3DSA:1.20.120.530 99 238 9.6E-27 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_0254 0ea23836d9e6b48aa5a3374651667a29 90 SUPERFAMILY SSF117991 6 90 3.79E-25 T 12-10-2018 IPR027471 YbeD-like domain superfamily ALFP_0254 0ea23836d9e6b48aa5a3374651667a29 90 Pfam PF04359 Protein of unknown function (DUF493) 7 90 2.7E-28 T 12-10-2018 IPR007454 Uncharacterised protein family UPF0250 ALFP_0254 0ea23836d9e6b48aa5a3374651667a29 90 Gene3D G3DSA:3.30.70.260 3 90 1.7E-28 T 12-10-2018 ALFP_0254 0ea23836d9e6b48aa5a3374651667a29 90 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 2 90 21.497 T 12-10-2018 IPR007454 Uncharacterised protein family UPF0250 ALFP_1671 c93283dea545d510755250a12478a88b 162 Pfam PF00866 Ring hydroxylating beta subunit 14 154 2.1E-47 T 12-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 ALFP_1671 c93283dea545d510755250a12478a88b 162 SUPERFAMILY SSF54427 3 162 2.54E-54 T 12-10-2018 IPR032710 NTF2-like domain superfamily ALFP_1671 c93283dea545d510755250a12478a88b 162 Gene3D G3DSA:3.10.450.50 1 162 3.8E-52 T 12-10-2018 ALFP_1671 c93283dea545d510755250a12478a88b 162 TIGRFAM TIGR03232 benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit 8 162 5.3E-75 T 12-10-2018 IPR017641 Benzoate 1,2-dioxygenase, small subunit GO:0055114 ALFP_3566 139f5e36e1dc84cc64662d7379a6fcde 366 Gene3D G3DSA:3.60.15.10 1 188 1.5E-18 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_3566 139f5e36e1dc84cc64662d7379a6fcde 366 Pfam PF12706 Beta-lactamase superfamily domain 49 98 1.0E-6 T 12-10-2018 IPR001279 Metallo-beta-lactamase ALFP_3566 139f5e36e1dc84cc64662d7379a6fcde 366 SUPERFAMILY SSF56281 6 227 5.11E-31 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_3566 139f5e36e1dc84cc64662d7379a6fcde 366 SMART SM00849 16 191 6.0E-8 T 12-10-2018 IPR001279 Metallo-beta-lactamase ALFP_2910 4f368e229075c0cd6ef505999c459b91 1099 SUPERFAMILY SSF51126 315 689 5.65E-5 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor ALFP_2910 4f368e229075c0cd6ef505999c459b91 1099 SMART SM00869 815 1089 2.5E-28 T 12-10-2018 IPR005546 Autotransporter beta-domain ALFP_2910 4f368e229075c0cd6ef505999c459b91 1099 Pfam PF03797 Autotransporter beta-domain 822 1077 5.4E-42 T 12-10-2018 IPR005546 Autotransporter beta-domain ALFP_2910 4f368e229075c0cd6ef505999c459b91 1099 Gene3D G3DSA:2.40.128.130 786 1099 7.9E-51 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily ALFP_2910 4f368e229075c0cd6ef505999c459b91 1099 SUPERFAMILY SSF103515 781 1099 9.81E-43 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily ALFP_2103 362b3d5d1d685683760f050ac6ecedc9 764 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 436 758 2.3E-153 T 12-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 ALFP_2103 362b3d5d1d685683760f050ac6ecedc9 764 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 2 763 37.012 T 12-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 ALFP_2103 362b3d5d1d685683760f050ac6ecedc9 764 Gene3D G3DSA:3.20.20.210 6 529 0.0 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 ALFP_2103 362b3d5d1d685683760f050ac6ecedc9 764 SUPERFAMILY SSF51726 411 761 7.72E-117 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 ALFP_2103 362b3d5d1d685683760f050ac6ecedc9 764 Gene3D G3DSA:3.20.20.210 395 761 0.0 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 ALFP_2103 362b3d5d1d685683760f050ac6ecedc9 764 PIRSF PIRSF000382 1 764 0.0 T 12-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 ALFP_2103 362b3d5d1d685683760f050ac6ecedc9 764 SUPERFAMILY SSF51726 5 400 9.55E-108 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 ALFP_2103 362b3d5d1d685683760f050ac6ecedc9 764 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 5 319 2.4E-120 T 12-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 ALFP_2103 362b3d5d1d685683760f050ac6ecedc9 764 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 7 762 0.0 T 12-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 ALFP_0464 135acf1b2a995eea8691640210549cb6 236 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 9.8E-12 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_0464 135acf1b2a995eea8691640210549cb6 236 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 9.8E-12 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_0464 135acf1b2a995eea8691640210549cb6 236 SUPERFAMILY SSF46689 6 84 1.65E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0464 135acf1b2a995eea8691640210549cb6 236 Gene3D G3DSA:1.10.10.60 1 61 1.0E-18 T 12-10-2018 ALFP_0464 135acf1b2a995eea8691640210549cb6 236 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 1.5E-16 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_0464 135acf1b2a995eea8691640210549cb6 236 Gene3D G3DSA:1.10.357.10 62 196 2.5E-31 T 12-10-2018 ALFP_0464 135acf1b2a995eea8691640210549cb6 236 SUPERFAMILY SSF48498 88 201 2.53E-19 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily ALFP_2810 c9d5b06c182333a589dbbabf08a8641a 530 SMART SM00851 15 130 1.8E-58 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain ALFP_2810 c9d5b06c182333a589dbbabf08a8641a 530 SMART SM00798 135 462 2.5E-186 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 ALFP_2810 c9d5b06c182333a589dbbabf08a8641a 530 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 5 530 1.0E-212 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 ALFP_2810 c9d5b06c182333a589dbbabf08a8641a 530 SUPERFAMILY SSF53927 224 530 5.01E-126 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 ALFP_2810 c9d5b06c182333a589dbbabf08a8641a 530 PIRSF PIRSF000414 1 530 1.2E-209 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 ALFP_2810 c9d5b06c182333a589dbbabf08a8641a 530 Gene3D G3DSA:3.40.50.1380 1 203 8.0E-80 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily ALFP_2810 c9d5b06c182333a589dbbabf08a8641a 530 Pfam PF01808 AICARFT/IMPCHase bienzyme 135 460 1.1E-112 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 ALFP_2810 c9d5b06c182333a589dbbabf08a8641a 530 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 3 530 42.624 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 ALFP_2810 c9d5b06c182333a589dbbabf08a8641a 530 SUPERFAMILY SSF52335 3 199 5.76E-63 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily ALFP_2810 c9d5b06c182333a589dbbabf08a8641a 530 Pfam PF02142 MGS-like domain 15 129 1.1E-28 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain ALFP_2810 c9d5b06c182333a589dbbabf08a8641a 530 Gene3D G3DSA:3.40.140.20 394 530 9.9E-57 T 12-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 ALFP_2810 c9d5b06c182333a589dbbabf08a8641a 530 Gene3D G3DSA:3.40.140.20 220 377 1.3E-59 T 12-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 ALFP_0665 05037638daba4f57d442e5b0ba23cc15 113 TIGRFAM TIGR01244 TIGR01244: TIGR01244 family protein 7 107 1.8E-31 T 12-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 ALFP_0665 05037638daba4f57d442e5b0ba23cc15 113 Gene3D G3DSA:3.90.190.10 4 112 2.7E-29 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like ALFP_0665 05037638daba4f57d442e5b0ba23cc15 113 Pfam PF04273 Putative phosphatase (DUF442) 7 107 4.9E-30 T 12-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 ALFP_0098 defbbf3e51fff68509d3e2df995bc61b 337 Pfam PF16220 Domain of unknown function (DUF4880) 20 61 1.7E-13 T 12-10-2018 IPR032623 FecR, N-terminal ALFP_0098 defbbf3e51fff68509d3e2df995bc61b 337 Pfam PF04773 FecR protein 128 220 4.6E-21 T 12-10-2018 IPR006860 FecR protein ALFP_0098 defbbf3e51fff68509d3e2df995bc61b 337 PIRSF PIRSF018266 13 333 3.1E-87 T 12-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component ALFP_0098 defbbf3e51fff68509d3e2df995bc61b 337 Gene3D G3DSA:2.60.120.1440 114 250 1.2E-22 T 12-10-2018 ALFP_1848 fc3df6769b61cd54b0a2b6a1aa32a5a0 1041 Pfam PF01568 Molydopterin dinucleotide binding domain 908 997 3.4E-12 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 ALFP_1848 fc3df6769b61cd54b0a2b6a1aa32a5a0 1041 SMART SM00926 81 163 5.4E-12 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_1848 fc3df6769b61cd54b0a2b6a1aa32a5a0 1041 SUPERFAMILY SSF53706 83 895 1.57E-99 T 12-10-2018 ALFP_1848 fc3df6769b61cd54b0a2b6a1aa32a5a0 1041 Gene3D G3DSA:2.40.40.20 865 1021 2.9E-22 T 12-10-2018 ALFP_1848 fc3df6769b61cd54b0a2b6a1aa32a5a0 1041 Gene3D G3DSA:2.20.25.90 78 124 4.4E-5 T 12-10-2018 ALFP_1848 fc3df6769b61cd54b0a2b6a1aa32a5a0 1041 Gene3D G3DSA:3.40.50.740 590 714 4.9E-8 T 12-10-2018 ALFP_1848 fc3df6769b61cd54b0a2b6a1aa32a5a0 1041 SUPERFAMILY SSF50692 890 1038 4.97E-23 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily ALFP_1848 fc3df6769b61cd54b0a2b6a1aa32a5a0 1041 Pfam PF00384 Molybdopterin oxidoreductase 248 698 1.8E-5 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2159 adb71dab54508d75cc9c4b3bbc4409bc 352 Pfam PF13353 4Fe-4S single cluster domain 6 88 1.7E-8 T 12-10-2018 ALFP_2159 adb71dab54508d75cc9c4b3bbc4409bc 352 Gene3D G3DSA:3.20.20.70 1 297 6.2E-45 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_2159 adb71dab54508d75cc9c4b3bbc4409bc 352 PIRSF PIRSF037420 1 352 2.4E-124 T 12-10-2018 IPR017200 Coenzyme PQQ synthesis protein E ALFP_2159 adb71dab54508d75cc9c4b3bbc4409bc 352 TIGRFAM TIGR04051 rSAM_NirJ: heme d1 biosynthesis radical SAM protein NirJ 1 350 5.9E-172 T 12-10-2018 IPR023992 Heme D1 biosynthesis, radical SAM protein NirJ ALFP_2159 adb71dab54508d75cc9c4b3bbc4409bc 352 Pfam PF04055 Radical SAM superfamily 5 145 1.0E-20 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 ALFP_2159 adb71dab54508d75cc9c4b3bbc4409bc 352 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 259 343 1.6E-7 T 12-10-2018 IPR023885 4Fe4S-binding SPASM domain ALFP_2159 adb71dab54508d75cc9c4b3bbc4409bc 352 SUPERFAMILY SSF102114 1 323 4.32E-63 T 12-10-2018 ALFP_2223 85d6cca2822b4b8fe5f9d5da430d8217 452 Hamap MF_00195 GTPase Der [der]. 7 445 37.183 T 12-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 ALFP_2223 85d6cca2822b4b8fe5f9d5da430d8217 452 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 78 96 7.0E-7 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_2223 85d6cca2822b4b8fe5f9d5da430d8217 452 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 10 30 7.0E-7 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_2223 85d6cca2822b4b8fe5f9d5da430d8217 452 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 8 442 4.9E-169 T 12-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 ALFP_2223 85d6cca2822b4b8fe5f9d5da430d8217 452 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 186 352 4.2E-25 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 ALFP_2223 85d6cca2822b4b8fe5f9d5da430d8217 452 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 163 4.5E-16 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 ALFP_2223 85d6cca2822b4b8fe5f9d5da430d8217 452 Gene3D G3DSA:3.40.50.300 6 166 3.6E-40 T 12-10-2018 ALFP_2223 85d6cca2822b4b8fe5f9d5da430d8217 452 SUPERFAMILY SSF52540 9 172 1.47E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2223 85d6cca2822b4b8fe5f9d5da430d8217 452 SUPERFAMILY SSF52540 143 448 3.3E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2223 85d6cca2822b4b8fe5f9d5da430d8217 452 Gene3D G3DSA:3.30.300.20 362 445 1.7E-22 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta ALFP_2223 85d6cca2822b4b8fe5f9d5da430d8217 452 PIRSF PIRSF006485 6 450 7.4E-168 T 12-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 ALFP_2223 85d6cca2822b4b8fe5f9d5da430d8217 452 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 362 442 3.4E-27 T 12-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like ALFP_2223 85d6cca2822b4b8fe5f9d5da430d8217 452 Gene3D G3DSA:3.40.50.300 182 357 3.0E-45 T 12-10-2018 ALFP_2223 85d6cca2822b4b8fe5f9d5da430d8217 452 Pfam PF01926 50S ribosome-binding GTPase 10 125 7.5E-25 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_2223 85d6cca2822b4b8fe5f9d5da430d8217 452 Pfam PF01926 50S ribosome-binding GTPase 189 306 3.0E-24 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_1090 0d337148b20a827c4f11e756273e02ac 314 Gene3D G3DSA:3.40.50.1820 26 311 2.1E-23 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1090 0d337148b20a827c4f11e756273e02ac 314 SUPERFAMILY SSF53474 25 309 5.27E-26 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0418 1edaec8baedf5b6a2b0a4ecf7b9072a3 279 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 7 276 2.7E-93 T 12-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 ALFP_0418 1edaec8baedf5b6a2b0a4ecf7b9072a3 279 Gene3D G3DSA:3.20.20.220 1 279 6.5E-94 T 12-10-2018 ALFP_0418 1edaec8baedf5b6a2b0a4ecf7b9072a3 279 Pfam PF02219 Methylenetetrahydrofolate reductase 3 276 2.8E-82 T 12-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 ALFP_0418 1edaec8baedf5b6a2b0a4ecf7b9072a3 279 SUPERFAMILY SSF51730 3 277 1.0E-91 T 12-10-2018 IPR029041 FAD-linked oxidoreductase-like ALFP_3602 8cc0ee1db63e0505b4ed8b782cf94991 316 Pfam PF01548 Transposase 9 145 4.7E-19 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 ALFP_3602 8cc0ee1db63e0505b4ed8b782cf94991 316 Pfam PF02371 Transposase IS116/IS110/IS902 family 189 265 5.0E-20 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 ALFP_2878 8cc0ee1db63e0505b4ed8b782cf94991 316 Pfam PF01548 Transposase 9 145 4.7E-19 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 ALFP_2878 8cc0ee1db63e0505b4ed8b782cf94991 316 Pfam PF02371 Transposase IS116/IS110/IS902 family 189 265 5.0E-20 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 ALFP_2921 cf805a7a4232f62d464f4f3e01c2a446 392 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 56 74 2.3E-6 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_2921 cf805a7a4232f62d464f4f3e01c2a446 392 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 37 53 2.3E-6 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_2921 cf805a7a4232f62d464f4f3e01c2a446 392 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 249 267 2.3E-6 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_2921 cf805a7a4232f62d464f4f3e01c2a446 392 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 325 340 2.3E-6 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_2921 cf805a7a4232f62d464f4f3e01c2a446 392 SUPERFAMILY SSF53822 16 361 1.6E-84 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_2921 cf805a7a4232f62d464f4f3e01c2a446 392 Gene3D G3DSA:3.40.50.2300 134 360 7.4E-122 T 12-10-2018 ALFP_2921 cf805a7a4232f62d464f4f3e01c2a446 392 Gene3D G3DSA:3.40.50.2300 35 348 7.4E-122 T 12-10-2018 ALFP_2921 cf805a7a4232f62d464f4f3e01c2a446 392 Pfam PF13458 Periplasmic binding protein 16 356 1.3E-71 T 12-10-2018 IPR028081 Leucine-binding protein domain ALFP_2337 f5aea48c8a332f39cade5483d63830e3 258 Pfam PF13646 HEAT repeats 91 175 3.6E-8 T 12-10-2018 ALFP_2337 f5aea48c8a332f39cade5483d63830e3 258 SUPERFAMILY SSF48371 88 255 4.82E-37 T 12-10-2018 IPR016024 Armadillo-type fold ALFP_2337 f5aea48c8a332f39cade5483d63830e3 258 Gene3D G3DSA:1.25.40.290 144 256 1.8E-28 T 12-10-2018 ALFP_0923 65fcc63a599339c78bfccf6c83ea3030 413 Gene3D G3DSA:2.40.230.10 170 413 1.2E-47 T 12-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 ALFP_0923 65fcc63a599339c78bfccf6c83ea3030 413 PRINTS PR01486 Bacterial phospholipase A1 protein signature 195 212 9.6E-11 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 ALFP_0923 65fcc63a599339c78bfccf6c83ea3030 413 PRINTS PR01486 Bacterial phospholipase A1 protein signature 324 342 9.6E-11 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 ALFP_0923 65fcc63a599339c78bfccf6c83ea3030 413 PRINTS PR01486 Bacterial phospholipase A1 protein signature 384 404 9.6E-11 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 ALFP_0923 65fcc63a599339c78bfccf6c83ea3030 413 PRINTS PR01486 Bacterial phospholipase A1 protein signature 273 287 9.6E-11 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 ALFP_0923 65fcc63a599339c78bfccf6c83ea3030 413 SUPERFAMILY SSF56931 178 412 3.66E-48 T 12-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 ALFP_0923 65fcc63a599339c78bfccf6c83ea3030 413 Pfam PF02253 Phospholipase A1 197 411 4.5E-31 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 ALFP_1427 bc21001204ca3ee3385e426294400451 245 SUPERFAMILY SSF52540 6 239 2.27E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1427 bc21001204ca3ee3385e426294400451 245 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 217 239 5.9E-6 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal ALFP_1427 bc21001204ca3ee3385e426294400451 245 Pfam PF00005 ABC transporter 25 168 2.3E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1427 bc21001204ca3ee3385e426294400451 245 Gene3D G3DSA:3.40.50.300 4 241 5.9E-67 T 12-10-2018 ALFP_1427 bc21001204ca3ee3385e426294400451 245 SMART SM00382 32 234 4.5E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1427 bc21001204ca3ee3385e426294400451 245 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1427 bc21001204ca3ee3385e426294400451 245 PIRSF PIRSF039137 3 241 1.5E-109 T 12-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 ALFP_2230 4e93e0b0969ab774a855982faffec3f0 141 Gene3D G3DSA:3.30.70.141 1 141 7.4E-57 T 12-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ALFP_2230 4e93e0b0969ab774a855982faffec3f0 141 SUPERFAMILY SSF54919 1 139 1.7E-55 T 12-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ALFP_2230 4e93e0b0969ab774a855982faffec3f0 141 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 12-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 ALFP_2230 4e93e0b0969ab774a855982faffec3f0 141 SMART SM00562 3 140 4.5E-79 T 12-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ALFP_2230 4e93e0b0969ab774a855982faffec3f0 141 Pfam PF00334 Nucleoside diphosphate kinase 4 137 6.0E-53 T 12-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ALFP_2230 4e93e0b0969ab774a855982faffec3f0 141 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 34.447 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ALFP_2230 4e93e0b0969ab774a855982faffec3f0 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 9.3E-38 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ALFP_2230 4e93e0b0969ab774a855982faffec3f0 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 9.3E-38 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ALFP_2230 4e93e0b0969ab774a855982faffec3f0 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 9.3E-38 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ALFP_2230 4e93e0b0969ab774a855982faffec3f0 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 9.3E-38 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ALFP_2230 4e93e0b0969ab774a855982faffec3f0 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 9.3E-38 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ALFP_0655 3066e1c689de6cfe9d359661cb265c5a 234 Pfam PF00005 ABC transporter 19 162 4.9E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0655 3066e1c689de6cfe9d359661cb265c5a 234 Gene3D G3DSA:3.40.50.300 1 234 1.4E-58 T 12-10-2018 ALFP_0655 3066e1c689de6cfe9d359661cb265c5a 234 SUPERFAMILY SSF52540 2 227 4.52E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0655 3066e1c689de6cfe9d359661cb265c5a 234 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0655 3066e1c689de6cfe9d359661cb265c5a 234 SMART SM00382 26 211 4.5E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0078 8a7414ef7d080ce9a6e85bd7553eebf4 543 Gene3D G3DSA:3.30.300.310 419 525 3.6E-23 T 12-10-2018 ALFP_0078 8a7414ef7d080ce9a6e85bd7553eebf4 543 Pfam PF13193 AMP-binding enzyme C-terminal domain 431 512 9.6E-15 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain ALFP_0078 8a7414ef7d080ce9a6e85bd7553eebf4 543 Pfam PF00501 AMP-binding enzyme 10 422 2.6E-75 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_0078 8a7414ef7d080ce9a6e85bd7553eebf4 543 SUPERFAMILY SSF56801 4 526 1.83E-115 T 12-10-2018 ALFP_0078 8a7414ef7d080ce9a6e85bd7553eebf4 543 ProSitePatterns PS00455 Putative AMP-binding domain signature. 167 178 - T 12-10-2018 IPR020845 AMP-binding, conserved site ALFP_0078 8a7414ef7d080ce9a6e85bd7553eebf4 543 Gene3D G3DSA:3.40.50.12780 2 418 5.3E-82 T 12-10-2018 ALFP_0641 f3d57864fdc753626c0926fd6d60ca3e 149 SUPERFAMILY SSF82093 29 136 8.63E-37 T 12-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 ALFP_0641 f3d57864fdc753626c0926fd6d60ca3e 149 Gene3D G3DSA:2.40.50.140 29 137 1.7E-37 T 12-10-2018 ALFP_0641 f3d57864fdc753626c0926fd6d60ca3e 149 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 1 141 32.993 T 12-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 ALFP_0641 f3d57864fdc753626c0926fd6d60ca3e 149 Pfam PF03100 CcmE 4 131 2.9E-47 T 12-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 ALFP_0856 56f7dc4b53e9a43e7c223ab4ef634a81 216 SUPERFAMILY SSF48008 82 207 7.06E-16 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_0856 56f7dc4b53e9a43e7c223ab4ef634a81 216 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 73 5.3E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0856 56f7dc4b53e9a43e7c223ab4ef634a81 216 Pfam PF07729 FCD domain 84 198 2.6E-15 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_0856 56f7dc4b53e9a43e7c223ab4ef634a81 216 Gene3D G3DSA:1.20.120.530 79 207 5.4E-16 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_0856 56f7dc4b53e9a43e7c223ab4ef634a81 216 Gene3D G3DSA:1.10.10.10 9 75 1.0E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0856 56f7dc4b53e9a43e7c223ab4ef634a81 216 SUPERFAMILY SSF46785 8 77 2.96E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0856 56f7dc4b53e9a43e7c223ab4ef634a81 216 SMART SM00345 15 73 6.8E-12 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0856 56f7dc4b53e9a43e7c223ab4ef634a81 216 SMART SM00895 83 206 3.1E-8 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_0657 c53a8521186c881a26bdb81debb7619a 402 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 285 1.0E-53 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 ALFP_0657 c53a8521186c881a26bdb81debb7619a 402 SUPERFAMILY SSF51735 99 286 9.56E-60 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0657 c53a8521186c881a26bdb81debb7619a 402 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 145 172 - T 12-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 ALFP_0657 c53a8521186c881a26bdb81debb7619a 402 SUPERFAMILY SSF52283 3 126 3.19E-41 T 12-10-2018 ALFP_0657 c53a8521186c881a26bdb81debb7619a 402 Gene3D G3DSA:3.40.50.720 6 303 1.6E-106 T 12-10-2018 ALFP_0657 c53a8521186c881a26bdb81debb7619a 402 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 317 1.1E-36 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 ALFP_0657 c53a8521186c881a26bdb81debb7619a 402 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 191 213 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site ALFP_0657 c53a8521186c881a26bdb81debb7619a 402 Gene3D G3DSA:3.40.50.720 100 288 1.6E-106 T 12-10-2018 ALFP_0657 c53a8521186c881a26bdb81debb7619a 402 SUPERFAMILY SSF55021 327 395 1.03E-12 T 12-10-2018 ALFP_0657 c53a8521186c881a26bdb81debb7619a 402 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 220 236 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site ALFP_0657 c53a8521186c881a26bdb81debb7619a 402 Gene3D G3DSA:3.30.70.260 319 399 6.7E-23 T 12-10-2018 ALFP_0273 715980069a3697b4945befdfc66b35b5 506 PRINTS PR00095 Anthranilate synthase component I signature 444 458 2.0E-23 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 ALFP_0273 715980069a3697b4945befdfc66b35b5 506 PRINTS PR00095 Anthranilate synthase component I signature 349 362 2.0E-23 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 ALFP_0273 715980069a3697b4945befdfc66b35b5 506 PRINTS PR00095 Anthranilate synthase component I signature 335 348 2.0E-23 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 ALFP_0273 715980069a3697b4945befdfc66b35b5 506 PRINTS PR00095 Anthranilate synthase component I signature 429 443 2.0E-23 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 ALFP_0273 715980069a3697b4945befdfc66b35b5 506 SUPERFAMILY SSF56322 14 495 7.46E-153 T 12-10-2018 IPR005801 ADC synthase GO:0009058 ALFP_0273 715980069a3697b4945befdfc66b35b5 506 Gene3D G3DSA:3.60.120.10 1 501 6.3E-169 T 12-10-2018 IPR005801 ADC synthase GO:0009058 ALFP_0273 715980069a3697b4945befdfc66b35b5 506 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 26 495 5.2E-159 T 12-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 ALFP_0273 715980069a3697b4945befdfc66b35b5 506 Pfam PF00425 chorismate binding enzyme 226 487 4.2E-96 T 12-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal ALFP_0273 715980069a3697b4945befdfc66b35b5 506 Pfam PF04715 Anthranilate synthase component I, N terminal region 26 177 2.1E-28 T 12-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 ALFP_1385 cfa4d5ba026aa02e34446490d80e3d3a 277 Gene3D G3DSA:3.60.21.40 5 244 2.9E-84 T 12-10-2018 ALFP_1385 cfa4d5ba026aa02e34446490d80e3d3a 277 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 4 259 37.477 T 12-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 ALFP_1385 cfa4d5ba026aa02e34446490d80e3d3a 277 SUPERFAMILY SSF56300 6 259 2.05E-54 T 12-10-2018 ALFP_1385 cfa4d5ba026aa02e34446490d80e3d3a 277 Gene3D G3DSA:3.30.750.180 108 235 2.9E-84 T 12-10-2018 ALFP_1385 cfa4d5ba026aa02e34446490d80e3d3a 277 Pfam PF00149 Calcineurin-like phosphoesterase 7 201 2.7E-20 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 ALFP_0304 fd28075abcfec7234426f2d65b94b46e 360 Gene3D G3DSA:1.10.1040.10 192 344 1.3E-30 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ALFP_0304 fd28075abcfec7234426f2d65b94b46e 360 SUPERFAMILY SSF51735 1 175 2.6E-16 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0304 fd28075abcfec7234426f2d65b94b46e 360 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2 100 1.6E-5 T 12-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 ALFP_0304 fd28075abcfec7234426f2d65b94b46e 360 Pfam PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain 182 326 1.3E-25 T 12-10-2018 IPR003421 Opine dehydrogenase GO:0016491|GO:0050662|GO:0055114 ALFP_0304 fd28075abcfec7234426f2d65b94b46e 360 Gene3D G3DSA:3.40.50.720 1 190 1.5E-50 T 12-10-2018 ALFP_0304 fd28075abcfec7234426f2d65b94b46e 360 SUPERFAMILY SSF48179 184 355 3.37E-41 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_0735 53e543aad51e5ce3870cf34aca2dc80d 398 Pfam PF01734 Patatin-like phospholipase 11 235 6.2E-23 T 12-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 ALFP_0735 53e543aad51e5ce3870cf34aca2dc80d 398 Gene3D G3DSA:3.40.1090.10 3 107 5.1E-20 T 12-10-2018 ALFP_0735 53e543aad51e5ce3870cf34aca2dc80d 398 SUPERFAMILY SSF52151 8 288 9.16E-46 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase ALFP_3551 4ef629b62efd0c2882063493092caacf 163 Pfam PF11158 Protein of unknown function (DUF2938) 11 158 2.7E-60 T 12-10-2018 IPR021329 Protein of unknown function DUF2938 ALFP_3587 999cf18ecc8ca2953979b8e38ff0ffd9 408 Gene3D G3DSA:1.20.1250.20 226 406 3.7E-15 T 12-10-2018 ALFP_3587 999cf18ecc8ca2953979b8e38ff0ffd9 408 Pfam PF07690 Major Facilitator Superfamily 29 366 7.9E-38 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_3587 999cf18ecc8ca2953979b8e38ff0ffd9 408 SUPERFAMILY SSF103473 21 404 6.93E-59 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_3587 999cf18ecc8ca2953979b8e38ff0ffd9 408 Gene3D G3DSA:1.20.1250.20 20 210 2.9E-27 T 12-10-2018 ALFP_0874 ab9cf5f4b31845781d56a1dbd344033c 241 SUPERFAMILY SSF50331 175 240 1.45E-20 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal ALFP_0874 ab9cf5f4b31845781d56a1dbd344033c 241 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 60 1.2E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0874 ab9cf5f4b31845781d56a1dbd344033c 241 Gene3D G3DSA:1.10.10.10 1 94 1.2E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0874 ab9cf5f4b31845781d56a1dbd344033c 241 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 174 239 6.3E-21 T 12-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 ALFP_0874 ab9cf5f4b31845781d56a1dbd344033c 241 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 101 167 3.1E-21 T 12-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 ALFP_0874 ab9cf5f4b31845781d56a1dbd344033c 241 PIRSF PIRSF005763 1 241 1.4E-82 T 12-10-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 ALFP_0874 ab9cf5f4b31845781d56a1dbd344033c 241 SUPERFAMILY SSF46785 2 99 9.8E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0874 ab9cf5f4b31845781d56a1dbd344033c 241 SUPERFAMILY SSF50331 101 171 4.86E-21 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal ALFP_0874 ab9cf5f4b31845781d56a1dbd344033c 241 Pfam PF03459 TOBE domain 103 166 2.3E-17 T 12-10-2018 IPR005116 Transport-associated OB, type 1 ALFP_0874 ab9cf5f4b31845781d56a1dbd344033c 241 Pfam PF03459 TOBE domain 176 238 8.5E-18 T 12-10-2018 IPR005116 Transport-associated OB, type 1 ALFP_0874 ab9cf5f4b31845781d56a1dbd344033c 241 Gene3D G3DSA:2.40.50.100 101 167 1.2E-25 T 12-10-2018 ALFP_0874 ab9cf5f4b31845781d56a1dbd344033c 241 Gene3D G3DSA:2.40.50.100 174 239 4.4E-24 T 12-10-2018 ALFP_1096 88cedf5619bdc98d42298ad3ec82b3b3 88 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 18 78 14.543 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 ALFP_1096 88cedf5619bdc98d42298ad3ec82b3b3 88 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 19 58 2.0E-9 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 ALFP_1096 88cedf5619bdc98d42298ad3ec82b3b3 88 PIRSF PIRSF006488 6 87 1.9E-21 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 ALFP_1096 88cedf5619bdc98d42298ad3ec82b3b3 88 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 18 72 3.8E-20 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 ALFP_1096 88cedf5619bdc98d42298ad3ec82b3b3 88 SUPERFAMILY SSF116842 12 78 1.19E-18 T 12-10-2018 ALFP_1096 88cedf5619bdc98d42298ad3ec82b3b3 88 Gene3D G3DSA:1.10.287.1040 12 85 9.9E-26 T 12-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 ALFP_1096 88cedf5619bdc98d42298ad3ec82b3b3 88 Pfam PF02609 Exonuclease VII small subunit 19 69 1.2E-18 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 ALFP_1358 b8799badd438ae88b0f7964afc471bdb 152 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 31.678 T 12-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 ALFP_1358 b8799badd438ae88b0f7964afc471bdb 152 Gene3D G3DSA:3.50.80.10 1 145 1.1E-50 T 12-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily ALFP_1358 b8799badd438ae88b0f7964afc471bdb 152 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 144 2.4E-51 T 12-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 ALFP_1358 b8799badd438ae88b0f7964afc471bdb 152 SUPERFAMILY SSF69500 1 143 1.15E-50 T 12-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily ALFP_1358 b8799badd438ae88b0f7964afc471bdb 152 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 143 2.4E-49 T 12-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 ALFP_3071 8230c18e8b9461720228cc4bf0aa2c1c 122 Pfam PF01521 Iron-sulphur cluster biosynthesis 17 117 5.5E-19 T 12-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 ALFP_3071 8230c18e8b9461720228cc4bf0aa2c1c 122 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 18 121 3.0E-37 T 12-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 ALFP_3071 8230c18e8b9461720228cc4bf0aa2c1c 122 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 103 120 - T 12-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 ALFP_3071 8230c18e8b9461720228cc4bf0aa2c1c 122 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 122 36.241 T 12-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 ALFP_3071 8230c18e8b9461720228cc4bf0aa2c1c 122 SUPERFAMILY SSF89360 17 111 3.73E-30 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 ALFP_3071 8230c18e8b9461720228cc4bf0aa2c1c 122 Gene3D G3DSA:2.60.300.12 17 122 1.2E-33 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 ALFP_1570 93ca9e9c180f72ab8b802a71bfe3d0d7 136 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 116 1.2E-7 T 12-10-2018 ALFP_1570 93ca9e9c180f72ab8b802a71bfe3d0d7 136 SUPERFAMILY SSF54593 8 133 1.33E-20 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_1570 93ca9e9c180f72ab8b802a71bfe3d0d7 136 ProSitePatterns PS00934 Glyoxalase I signature 1. 10 30 - T 12-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 ALFP_1570 93ca9e9c180f72ab8b802a71bfe3d0d7 136 Gene3D G3DSA:3.10.180.10 3 132 1.7E-19 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_2052 e02052c446397c59ee84f909cb4bd700 161 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 161 27.187 T 12-10-2018 IPR007551 Protein of unknown function DUF520 ALFP_2052 e02052c446397c59ee84f909cb4bd700 161 Gene3D G3DSA:3.30.70.860 96 161 3.7E-28 T 12-10-2018 IPR035571 UPF0234-like, C-terminal ALFP_2052 e02052c446397c59ee84f909cb4bd700 161 Pfam PF04461 Protein of unknown function (DUF520) 2 160 1.1E-58 T 12-10-2018 IPR007551 Protein of unknown function DUF520 ALFP_2052 e02052c446397c59ee84f909cb4bd700 161 Gene3D G3DSA:3.30.70.990 9 95 1.1E-27 T 12-10-2018 IPR035570 UPF0234, N-terminal ALFP_2052 e02052c446397c59ee84f909cb4bd700 161 SUPERFAMILY SSF89963 2 84 5.36E-27 T 12-10-2018 IPR036183 YajQ-like superfamily ALFP_2052 e02052c446397c59ee84f909cb4bd700 161 SUPERFAMILY SSF89963 90 161 1.99E-26 T 12-10-2018 IPR036183 YajQ-like superfamily ALFP_1176 8b077fb11e56ae75ad5edd213e143a74 573 SUPERFAMILY SSF53649 32 546 5.23E-152 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 ALFP_1176 8b077fb11e56ae75ad5edd213e143a74 573 Pfam PF00884 Sulfatase 34 442 1.6E-78 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 ALFP_1176 8b077fb11e56ae75ad5edd213e143a74 573 Gene3D G3DSA:3.30.1120.10 474 551 3.5E-26 T 12-10-2018 ALFP_1176 8b077fb11e56ae75ad5edd213e143a74 573 ProSitePatterns PS00149 Sulfatases signature 2. 134 144 - T 12-10-2018 IPR024607 Sulfatase, conserved site ALFP_1176 8b077fb11e56ae75ad5edd213e143a74 573 Gene3D G3DSA:3.40.720.10 31 471 2.2E-142 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 ALFP_0929 08cdcda3d97539c0ede55a547fc2f3ef 208 Gene3D G3DSA:3.90.870.10 1 205 1.3E-57 T 12-10-2018 ALFP_0929 08cdcda3d97539c0ede55a547fc2f3ef 208 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 200 7.3E-52 T 12-10-2018 IPR006070 YrdC-like domain GO:0003725 ALFP_0929 08cdcda3d97539c0ede55a547fc2f3ef 208 SUPERFAMILY SSF55821 1 202 2.99E-57 T 12-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily ALFP_0929 08cdcda3d97539c0ede55a547fc2f3ef 208 Pfam PF01300 Telomere recombination 22 198 3.4E-40 T 12-10-2018 IPR006070 YrdC-like domain GO:0003725 ALFP_2479 4bf47ab807ffad8a9d99326a0d39f5e3 431 PIRSF PIRSF000151 12 431 8.6E-175 T 12-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 ALFP_2479 4bf47ab807ffad8a9d99326a0d39f5e3 431 Gene3D G3DSA:3.40.309.10 240 388 3.5E-163 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_2479 4bf47ab807ffad8a9d99326a0d39f5e3 431 SUPERFAMILY SSF53720 19 430 3.4E-118 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_2479 4bf47ab807ffad8a9d99326a0d39f5e3 431 Pfam PF00171 Aldehyde dehydrogenase family 20 297 1.0E-20 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_2479 4bf47ab807ffad8a9d99326a0d39f5e3 431 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 337 358 - T 12-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 ALFP_2479 4bf47ab807ffad8a9d99326a0d39f5e3 431 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 19 430 40.986 T 12-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 ALFP_2479 4bf47ab807ffad8a9d99326a0d39f5e3 431 Gene3D G3DSA:3.40.605.10 32 425 3.5E-163 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_2479 4bf47ab807ffad8a9d99326a0d39f5e3 431 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 27 420 1.9E-145 T 12-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 ALFP_2229 536765cb013f5fe45808edcd833678ea 382 Gene3D G3DSA:3.20.20.70 68 346 9.5E-106 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_2229 536765cb013f5fe45808edcd833678ea 382 PIRSF PIRSF006004 5 373 2.6E-143 T 12-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 ALFP_2229 536765cb013f5fe45808edcd833678ea 382 SUPERFAMILY SSF102114 104 328 2.75E-13 T 12-10-2018 ALFP_2229 536765cb013f5fe45808edcd833678ea 382 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 6 361 71.799 T 12-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 ALFP_2229 536765cb013f5fe45808edcd833678ea 382 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 7 364 1.1E-127 T 12-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 ALFP_2229 536765cb013f5fe45808edcd833678ea 382 Gene3D G3DSA:1.10.150.530 7 67 3.9E-19 T 12-10-2018 ALFP_2229 536765cb013f5fe45808edcd833678ea 382 Pfam PF04055 Radical SAM superfamily 110 288 3.6E-16 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 ALFP_0268 0ab881ffc4d169e9b7c82dc09beedb3d 620 Gene3D G3DSA:3.20.70.20 47 577 1.4E-106 T 12-10-2018 ALFP_0268 0ab881ffc4d169e9b7c82dc09beedb3d 620 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 34 566 5.0E-168 T 12-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 ALFP_0268 0ab881ffc4d169e9b7c82dc09beedb3d 620 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 33 566 4.1E-135 T 12-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 ALFP_0268 0ab881ffc4d169e9b7c82dc09beedb3d 620 SUPERFAMILY SSF51998 34 567 1.25E-155 T 12-10-2018 ALFP_2034 eaa87b008b2fd602a65f1d099281ac02 222 Gene3D G3DSA:1.10.357.10 75 222 3.0E-17 T 12-10-2018 ALFP_2034 eaa87b008b2fd602a65f1d099281ac02 222 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 77 208 3.9E-7 T 12-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 ALFP_2034 eaa87b008b2fd602a65f1d099281ac02 222 Gene3D G3DSA:1.10.10.60 2 73 2.7E-16 T 12-10-2018 ALFP_2034 eaa87b008b2fd602a65f1d099281ac02 222 SUPERFAMILY SSF46689 5 74 7.77E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2034 eaa87b008b2fd602a65f1d099281ac02 222 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 63 2.6E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_2034 eaa87b008b2fd602a65f1d099281ac02 222 SUPERFAMILY SSF48498 79 211 9.64E-21 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily ALFP_3110 464ae1209f7f7025524a6101e0c3d1c1 629 Pfam PF00773 RNB domain 471 513 1.1E-7 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 ALFP_3110 464ae1209f7f7025524a6101e0c3d1c1 629 SUPERFAMILY SSF50249 217 565 2.17E-71 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_3110 464ae1209f7f7025524a6101e0c3d1c1 629 SMART SM00955 235 516 3.1E-59 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 ALFP_3110 464ae1209f7f7025524a6101e0c3d1c1 629 Pfam PF00773 RNB domain 240 470 2.3E-37 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 ALFP_0808 1ceb04a0bd82ea4516f976a81466e5ac 287 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 86 99 - T 12-10-2018 IPR020583 Inositol monophosphatase, metal-binding site ALFP_0808 1ceb04a0bd82ea4516f976a81466e5ac 287 PRINTS PR01959 SuhB family inositol monophosphatase signature 173 199 1.7E-14 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 ALFP_0808 1ceb04a0bd82ea4516f976a81466e5ac 287 PRINTS PR01959 SuhB family inositol monophosphatase signature 24 46 1.7E-14 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 ALFP_0808 1ceb04a0bd82ea4516f976a81466e5ac 287 PRINTS PR01959 SuhB family inositol monophosphatase signature 121 140 1.7E-14 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 ALFP_0808 1ceb04a0bd82ea4516f976a81466e5ac 287 PRINTS PR01959 SuhB family inositol monophosphatase signature 215 227 1.7E-14 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 ALFP_0808 1ceb04a0bd82ea4516f976a81466e5ac 287 Gene3D G3DSA:3.40.190.80 158 282 1.8E-33 T 12-10-2018 ALFP_0808 1ceb04a0bd82ea4516f976a81466e5ac 287 SUPERFAMILY SSF56655 6 278 3.01E-73 T 12-10-2018 ALFP_0808 1ceb04a0bd82ea4516f976a81466e5ac 287 PRINTS PR00377 Inositol monophosphatase superfamily signature 67 83 1.9E-46 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 ALFP_0808 1ceb04a0bd82ea4516f976a81466e5ac 287 PRINTS PR00377 Inositol monophosphatase superfamily signature 86 102 1.9E-46 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 ALFP_0808 1ceb04a0bd82ea4516f976a81466e5ac 287 PRINTS PR00377 Inositol monophosphatase superfamily signature 225 249 1.9E-46 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 ALFP_0808 1ceb04a0bd82ea4516f976a81466e5ac 287 PRINTS PR00377 Inositol monophosphatase superfamily signature 147 170 1.9E-46 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 ALFP_0808 1ceb04a0bd82ea4516f976a81466e5ac 287 PRINTS PR00377 Inositol monophosphatase superfamily signature 194 215 1.9E-46 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 ALFP_0808 1ceb04a0bd82ea4516f976a81466e5ac 287 PRINTS PR00377 Inositol monophosphatase superfamily signature 45 65 1.9E-46 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 ALFP_0808 1ceb04a0bd82ea4516f976a81466e5ac 287 Gene3D G3DSA:3.30.540.10 4 157 2.9E-41 T 12-10-2018 ALFP_0808 1ceb04a0bd82ea4516f976a81466e5ac 287 Pfam PF00459 Inositol monophosphatase family 11 271 1.6E-53 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 ALFP_1064 3922eb922a7c2bd66a6d7e9cb34f15ee 291 Gene3D G3DSA:1.25.40.10 57 278 1.6E-53 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_1064 3922eb922a7c2bd66a6d7e9cb34f15ee 291 Pfam PF13525 Outer membrane lipoprotein 57 262 7.0E-59 T 12-10-2018 IPR039565 Outer membrane lipoprotein BamD-like ALFP_1064 3922eb922a7c2bd66a6d7e9cb34f15ee 291 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 26 268 37.463 T 12-10-2018 IPR017689 Outer membrane protein assembly factor BamD ALFP_1064 3922eb922a7c2bd66a6d7e9cb34f15ee 291 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 30 273 1.1E-81 T 12-10-2018 IPR017689 Outer membrane protein assembly factor BamD ALFP_1375 0840bfffd973e049f01b1ddedd43acc8 486 SMART SM00267 304 477 1.1E-66 T 12-10-2018 IPR000160 GGDEF domain ALFP_1375 0840bfffd973e049f01b1ddedd43acc8 486 Gene3D G3DSA:3.30.70.270 308 479 1.0E-56 T 12-10-2018 ALFP_1375 0840bfffd973e049f01b1ddedd43acc8 486 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 311 475 3.9E-50 T 12-10-2018 IPR000160 GGDEF domain ALFP_1375 0840bfffd973e049f01b1ddedd43acc8 486 SUPERFAMILY SSF55073 320 478 6.36E-47 T 12-10-2018 IPR029787 Nucleotide cyclase ALFP_1375 0840bfffd973e049f01b1ddedd43acc8 486 Pfam PF00990 Diguanylate cyclase, GGDEF domain 315 473 1.4E-47 T 12-10-2018 IPR000160 GGDEF domain ALFP_1081 4c2480cea9f1e31fbbde4cab292591e0 152 Pfam PF07849 Protein of unknown function (DUF1641) 109 140 3.2E-8 T 12-10-2018 IPR012440 Protein of unknown function DUF1641 ALFP_2581 b96842edc15d2c464e01fde63b3d361e 213 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 19 162 3.0E-32 T 12-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2581 b96842edc15d2c464e01fde63b3d361e 213 Gene3D G3DSA:1.20.120.1200 4 164 7.5E-37 T 12-10-2018 ALFP_0743 8fa6a6038a253e536d93961427fb126a 480 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 274 285 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 ALFP_0743 8fa6a6038a253e536d93961427fb126a 480 SUPERFAMILY SSF53720 3 476 3.14E-155 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_0743 8fa6a6038a253e536d93961427fb126a 480 Gene3D G3DSA:3.40.605.10 21 467 4.2E-170 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_0743 8fa6a6038a253e536d93961427fb126a 480 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 246 253 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 ALFP_0743 8fa6a6038a253e536d93961427fb126a 480 Pfam PF00171 Aldehyde dehydrogenase family 20 473 6.3E-156 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_0743 8fa6a6038a253e536d93961427fb126a 480 Gene3D G3DSA:3.40.309.10 250 442 4.2E-170 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_0295 3e153ff5092a7d009ec42a54e8e83177 312 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 296 5.3E-35 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_1301 01b2db85cca6c097fa5d449530d4488f 442 SUPERFAMILY SSF51905 165 293 9.5E-30 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1301 01b2db85cca6c097fa5d449530d4488f 442 Gene3D G3DSA:3.50.50.60 159 293 9.9E-85 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1301 01b2db85cca6c097fa5d449530d4488f 442 SUPERFAMILY SSF51905 46 374 1.24E-25 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1301 01b2db85cca6c097fa5d449530d4488f 442 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 46 150 5.2E-10 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ALFP_1301 01b2db85cca6c097fa5d449530d4488f 442 Gene3D G3DSA:3.50.50.60 46 366 9.9E-85 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_3165 e82becb65d67f67a7169e0f78844108d 759 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 280 725 3.6E-70 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3165 e82becb65d67f67a7169e0f78844108d 759 SUPERFAMILY SSF81442 275 748 7.98E-80 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3165 e82becb65d67f67a7169e0f78844108d 759 Gene3D G3DSA:1.20.210.10 222 753 7.4E-171 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3165 e82becb65d67f67a7169e0f78844108d 759 PRINTS PR00173 Glutamate-aspartate symporter signature 533 558 1.3E-5 T 12-10-2018 ALFP_3165 e82becb65d67f67a7169e0f78844108d 759 PRINTS PR00173 Glutamate-aspartate symporter signature 715 734 1.3E-5 T 12-10-2018 ALFP_3165 e82becb65d67f67a7169e0f78844108d 759 PRINTS PR00173 Glutamate-aspartate symporter signature 445 465 1.3E-5 T 12-10-2018 ALFP_0297 7b538146ebaae34457e35e29f9001487 387 SUPERFAMILY SSF53822 23 370 5.05E-71 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_0297 7b538146ebaae34457e35e29f9001487 387 Gene3D G3DSA:3.40.50.2300 25 354 2.1E-85 T 12-10-2018 ALFP_0297 7b538146ebaae34457e35e29f9001487 387 Pfam PF13458 Periplasmic binding protein 23 364 6.5E-66 T 12-10-2018 IPR028081 Leucine-binding protein domain ALFP_0297 7b538146ebaae34457e35e29f9001487 387 Gene3D G3DSA:3.40.50.2300 141 356 2.1E-85 T 12-10-2018 ALFP_1215 4d975194b196e5664c3c248e836b534e 636 Gene3D G3DSA:2.60.120.10 14 143 3.3E-10 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_1215 4d975194b196e5664c3c248e836b534e 636 Pfam PF00027 Cyclic nucleotide-binding domain 50 128 5.4E-7 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain ALFP_1215 4d975194b196e5664c3c248e836b534e 636 Pfam PF00571 CBS domain 178 226 2.3E-8 T 12-10-2018 IPR000644 CBS domain ALFP_1215 4d975194b196e5664c3c248e836b534e 636 Pfam PF00571 CBS domain 237 288 2.4E-9 T 12-10-2018 IPR000644 CBS domain ALFP_1215 4d975194b196e5664c3c248e836b534e 636 SMART SM00116 178 226 2.0E-6 T 12-10-2018 IPR000644 CBS domain ALFP_1215 4d975194b196e5664c3c248e836b534e 636 SMART SM00116 243 290 6.1E-5 T 12-10-2018 IPR000644 CBS domain ALFP_1215 4d975194b196e5664c3c248e836b534e 636 SUPERFAMILY SSF51206 23 138 4.06E-13 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like ALFP_1215 4d975194b196e5664c3c248e836b534e 636 Gene3D G3DSA:3.10.580.10 151 297 3.2E-30 T 12-10-2018 ALFP_1215 4d975194b196e5664c3c248e836b534e 636 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 491 634 4.9E-33 T 12-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding ALFP_1215 4d975194b196e5664c3c248e836b534e 636 SUPERFAMILY SSF54631 176 287 3.03E-26 T 12-10-2018 ALFP_1215 4d975194b196e5664c3c248e836b534e 636 Pfam PF03445 Putative nucleotidyltransferase DUF294 315 454 5.1E-43 T 12-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 ALFP_0785 b94642c5d6ecc0f5b3a228e3f68d36e6 127 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 127 38.838 T 12-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 ALFP_0785 b94642c5d6ecc0f5b3a228e3f68d36e6 127 SUPERFAMILY SSF89447 1 116 7.74E-31 T 12-10-2018 IPR037914 SpoVT-AbrB domain superfamily ALFP_0785 b94642c5d6ecc0f5b3a228e3f68d36e6 127 Pfam PF02381 MraZ protein, putative antitoxin-like 59 121 2.8E-13 T 12-10-2018 IPR020603 MraZ domain ALFP_0785 b94642c5d6ecc0f5b3a228e3f68d36e6 127 Pfam PF02381 MraZ protein, putative antitoxin-like 1 52 7.9E-5 T 12-10-2018 IPR020603 MraZ domain ALFP_0785 b94642c5d6ecc0f5b3a228e3f68d36e6 127 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 102 4.0E-42 T 12-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 ALFP_0785 b94642c5d6ecc0f5b3a228e3f68d36e6 127 Gene3D G3DSA:2.40.330.20 1 123 3.7E-29 T 12-10-2018 IPR038619 MraZ superfamily ALFP_3223 bd478ba759323c2235d2b6d793b9ed55 183 Pfam PF00156 Phosphoribosyl transferase domain 48 158 2.3E-17 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 ALFP_3223 bd478ba759323c2235d2b6d793b9ed55 183 Gene3D G3DSA:3.40.50.2020 2 181 2.4E-64 T 12-10-2018 ALFP_3223 bd478ba759323c2235d2b6d793b9ed55 183 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 9 178 37.345 T 12-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 ALFP_3223 bd478ba759323c2235d2b6d793b9ed55 183 SUPERFAMILY SSF53271 10 178 3.02E-53 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like ALFP_3223 bd478ba759323c2235d2b6d793b9ed55 183 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 10 177 8.8E-67 T 12-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 ALFP_3447 a9bf74d9ae67b5c13b4ca84643657f89 184 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 54 5.7E-11 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 ALFP_3447 a9bf74d9ae67b5c13b4ca84643657f89 184 Gene3D G3DSA:1.20.1050.10 62 168 3.2E-64 T 12-10-2018 ALFP_3447 a9bf74d9ae67b5c13b4ca84643657f89 184 Gene3D G3DSA:3.40.30.10 1 176 3.2E-64 T 12-10-2018 ALFP_3447 a9bf74d9ae67b5c13b4ca84643657f89 184 Pfam PF13410 Glutathione S-transferase, C-terminal domain 104 164 2.2E-9 T 12-10-2018 ALFP_3447 a9bf74d9ae67b5c13b4ca84643657f89 184 SUPERFAMILY SSF52833 2 83 5.72E-18 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_3447 a9bf74d9ae67b5c13b4ca84643657f89 184 SUPERFAMILY SSF47616 55 183 2.92E-24 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily ALFP_3605 c8fd4bbd3211491856366333ac3ab382 219 SUPERFAMILY SSF46626 131 217 1.92E-22 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_3605 c8fd4bbd3211491856366333ac3ab382 219 Gene3D G3DSA:1.10.760.10 126 219 3.1E-27 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_3605 c8fd4bbd3211491856366333ac3ab382 219 Gene3D G3DSA:1.10.760.10 18 116 3.4E-20 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_3605 c8fd4bbd3211491856366333ac3ab382 219 Pfam PF00034 Cytochrome c 22 117 9.6E-9 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3605 c8fd4bbd3211491856366333ac3ab382 219 Pfam PF00034 Cytochrome c 135 211 3.7E-7 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3605 c8fd4bbd3211491856366333ac3ab382 219 PIRSF PIRSF000005 1 219 6.7E-59 T 12-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 ALFP_3605 c8fd4bbd3211491856366333ac3ab382 219 SUPERFAMILY SSF46626 18 116 4.5E-19 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0369 200ba2195e1973b58dd7481da1b01e0f 296 SUPERFAMILY SSF46626 220 293 2.01E-15 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0369 200ba2195e1973b58dd7481da1b01e0f 296 SUPERFAMILY SSF46626 86 162 1.37E-16 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0369 200ba2195e1973b58dd7481da1b01e0f 296 Gene3D G3DSA:1.10.760.10 84 164 1.1E-29 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0369 200ba2195e1973b58dd7481da1b01e0f 296 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 221 291 1.6E-14 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_0369 200ba2195e1973b58dd7481da1b01e0f 296 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 85 160 3.8E-16 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_0369 200ba2195e1973b58dd7481da1b01e0f 296 PRINTS PR00607 Class IE cytochrome C signature 135 147 8.8E-13 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 ALFP_0369 200ba2195e1973b58dd7481da1b01e0f 296 PRINTS PR00607 Class IE cytochrome C signature 150 161 8.8E-13 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 ALFP_0369 200ba2195e1973b58dd7481da1b01e0f 296 PRINTS PR00607 Class IE cytochrome C signature 96 107 8.8E-13 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 ALFP_0369 200ba2195e1973b58dd7481da1b01e0f 296 PRINTS PR00607 Class IE cytochrome C signature 107 117 8.8E-13 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 ALFP_0369 200ba2195e1973b58dd7481da1b01e0f 296 Gene3D G3DSA:1.10.760.10 210 296 1.1E-31 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2915 e712d6d79a30ede5227022cc3aaa9022 158 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 44 52 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ALFP_2915 e712d6d79a30ede5227022cc3aaa9022 158 Pfam PF01799 [2Fe-2S] binding domain 78 150 2.3E-24 T 12-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 ALFP_2915 e712d6d79a30ede5227022cc3aaa9022 158 SUPERFAMILY SSF47741 89 156 7.59E-27 T 12-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily ALFP_2915 e712d6d79a30ede5227022cc3aaa9022 158 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 11 58 1.6E-6 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_2915 e712d6d79a30ede5227022cc3aaa9022 158 SUPERFAMILY SSF54292 8 83 2.1E-23 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_2915 e712d6d79a30ede5227022cc3aaa9022 158 Gene3D G3DSA:3.10.20.30 3 80 3.4E-26 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_2915 e712d6d79a30ede5227022cc3aaa9022 158 Gene3D G3DSA:1.10.150.120 81 158 1.2E-25 T 12-10-2018 ALFP_1314 1e67d59d84218792565fa554ab6e1829 762 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 133 745 4.1E-103 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 ALFP_1314 1e67d59d84218792565fa554ab6e1829 762 SMART SM00965 47 97 1.1E-12 T 12-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 ALFP_1314 1e67d59d84218792565fa554ab6e1829 762 Pfam PF07660 Secretin and TonB N terminus short domain 47 95 1.0E-12 T 12-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 ALFP_1314 1e67d59d84218792565fa554ab6e1829 762 Gene3D G3DSA:3.55.50.30 22 96 6.1E-27 T 12-10-2018 ALFP_1314 1e67d59d84218792565fa554ab6e1829 762 SUPERFAMILY SSF56935 126 759 6.92E-122 T 12-10-2018 ALFP_1314 1e67d59d84218792565fa554ab6e1829 762 Gene3D G3DSA:2.40.170.20 246 761 3.1E-127 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_1314 1e67d59d84218792565fa554ab6e1829 762 Pfam PF00593 TonB dependent receptor 348 759 1.1E-52 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_1314 1e67d59d84218792565fa554ab6e1829 762 Gene3D G3DSA:2.170.130.10 114 245 5.9E-33 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_1314 1e67d59d84218792565fa554ab6e1829 762 Pfam PF07715 TonB-dependent Receptor Plug Domain 132 235 1.0E-18 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_2176 40912e569f6cf1f4d5e8835ee318bf88 442 Gene3D G3DSA:3.40.50.10840 7 257 3.6E-56 T 12-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily ALFP_2176 40912e569f6cf1f4d5e8835ee318bf88 442 SUPERFAMILY SSF142764 9 437 3.53E-77 T 12-10-2018 ALFP_2176 40912e569f6cf1f4d5e8835ee318bf88 442 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 275 433 3.6E-28 T 12-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain ALFP_2176 40912e569f6cf1f4d5e8835ee318bf88 442 Gene3D G3DSA:3.40.980.20 263 438 1.3E-36 T 12-10-2018 ALFP_2176 40912e569f6cf1f4d5e8835ee318bf88 442 Pfam PF07005 Putative sugar-binding N-terminal domain 9 252 2.0E-39 T 12-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain ALFP_1244 d96dc7c57231f20c47d0e1b35beac05b 859 Pfam PF10139 Putative bacterial virulence factor 25 670 4.2E-253 T 12-10-2018 IPR017030 Virulence effector, SrfC ALFP_1244 d96dc7c57231f20c47d0e1b35beac05b 859 Pfam PF10139 Putative bacterial virulence factor 672 850 1.2E-31 T 12-10-2018 IPR017030 Virulence effector, SrfC ALFP_1244 d96dc7c57231f20c47d0e1b35beac05b 859 PIRSF PIRSF034586 666 857 1.6E-32 T 12-10-2018 IPR017030 Virulence effector, SrfC ALFP_1244 d96dc7c57231f20c47d0e1b35beac05b 859 PIRSF PIRSF034586 1 678 2.2E-234 T 12-10-2018 IPR017030 Virulence effector, SrfC ALFP_2829 643f691c7f9bec8dfb1238b225c038cd 103 SUPERFAMILY SSF102829 3 96 6.41E-20 T 12-10-2018 IPR036192 Cell division protein ZapA-like superfamily ALFP_2829 643f691c7f9bec8dfb1238b225c038cd 103 Pfam PF05164 Cell division protein ZapA 4 90 1.6E-20 T 12-10-2018 IPR007838 Cell division protein ZapA-like ALFP_2829 643f691c7f9bec8dfb1238b225c038cd 103 Gene3D G3DSA:1.10.20.30 1 45 4.3E-14 T 12-10-2018 ALFP_3518 8a5cdb4a667b409b171613e37528f93e 535 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 39 480 7.4E-156 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3518 8a5cdb4a667b409b171613e37528f93e 535 SUPERFAMILY SSF81442 27 534 1.19E-195 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3518 8a5cdb4a667b409b171613e37528f93e 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 147 159 3.5E-121 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3518 8a5cdb4a667b409b171613e37528f93e 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 77 100 3.5E-121 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3518 8a5cdb4a667b409b171613e37528f93e 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 205 224 3.5E-121 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3518 8a5cdb4a667b409b171613e37528f93e 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 302 317 3.5E-121 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3518 8a5cdb4a667b409b171613e37528f93e 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 389 408 3.5E-121 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3518 8a5cdb4a667b409b171613e37528f93e 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 361 379 3.5E-121 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3518 8a5cdb4a667b409b171613e37528f93e 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 30 55 3.5E-121 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3518 8a5cdb4a667b409b171613e37528f93e 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 326 347 3.5E-121 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3518 8a5cdb4a667b409b171613e37528f93e 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 104 128 3.5E-121 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3518 8a5cdb4a667b409b171613e37528f93e 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 176 194 3.5E-121 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3518 8a5cdb4a667b409b171613e37528f93e 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 256 277 3.5E-121 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3518 8a5cdb4a667b409b171613e37528f93e 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 439 460 3.5E-121 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3518 8a5cdb4a667b409b171613e37528f93e 535 Gene3D G3DSA:1.20.210.10 17 535 6.0E-224 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3518 8a5cdb4a667b409b171613e37528f93e 535 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 258 312 - T 12-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3518 8a5cdb4a667b409b171613e37528f93e 535 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 31 534 1.8E-218 T 12-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 ALFP_1994 5af34410fececf6489435c75704fe8fa 153 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1994 5af34410fececf6489435c75704fe8fa 153 SMART SM00422 1 69 3.7E-28 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1994 5af34410fececf6489435c75704fe8fa 153 Pfam PF13411 MerR HTH family regulatory protein 2 65 8.8E-17 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1994 5af34410fececf6489435c75704fe8fa 153 Gene3D G3DSA:1.10.1660.10 1 124 5.2E-34 T 12-10-2018 ALFP_1994 5af34410fececf6489435c75704fe8fa 153 SUPERFAMILY SSF46955 1 125 5.86E-34 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily ALFP_1994 5af34410fececf6489435c75704fe8fa 153 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 2.8E-6 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1994 5af34410fececf6489435c75704fe8fa 153 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 2.8E-6 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1994 5af34410fececf6489435c75704fe8fa 153 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 2.8E-6 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1041 4a432bbcc8bad86dd7dbdb35e801b1cd 434 Gene3D G3DSA:1.10.580.10 61 419 6.1E-143 T 12-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 ALFP_1041 4a432bbcc8bad86dd7dbdb35e801b1cd 434 ProSitePatterns PS00480 Citrate synthase signature. 310 322 - T 12-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 ALFP_1041 4a432bbcc8bad86dd7dbdb35e801b1cd 434 Gene3D G3DSA:2.20.28.60 1 54 5.3E-25 T 12-10-2018 ALFP_1041 4a432bbcc8bad86dd7dbdb35e801b1cd 434 PRINTS PR00143 Citrate synthase signature 223 238 1.4E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 ALFP_1041 4a432bbcc8bad86dd7dbdb35e801b1cd 434 PRINTS PR00143 Citrate synthase signature 367 383 1.4E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 ALFP_1041 4a432bbcc8bad86dd7dbdb35e801b1cd 434 PRINTS PR00143 Citrate synthase signature 303 323 1.4E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 ALFP_1041 4a432bbcc8bad86dd7dbdb35e801b1cd 434 PRINTS PR00143 Citrate synthase signature 387 401 1.4E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 ALFP_1041 4a432bbcc8bad86dd7dbdb35e801b1cd 434 PRINTS PR00143 Citrate synthase signature 169 182 1.4E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 ALFP_1041 4a432bbcc8bad86dd7dbdb35e801b1cd 434 PRINTS PR00143 Citrate synthase signature 245 273 1.4E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 ALFP_1041 4a432bbcc8bad86dd7dbdb35e801b1cd 434 SUPERFAMILY SSF48256 10 431 3.66E-162 T 12-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 ALFP_1041 4a432bbcc8bad86dd7dbdb35e801b1cd 434 Gene3D G3DSA:1.10.230.10 272 384 6.1E-143 T 12-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain ALFP_1041 4a432bbcc8bad86dd7dbdb35e801b1cd 434 PIRSF PIRSF001369 41 434 1.2E-160 T 12-10-2018 IPR024176 Citrate synthase, bacterial-type ALFP_1041 4a432bbcc8bad86dd7dbdb35e801b1cd 434 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 18 430 1.2E-234 T 12-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 ALFP_1041 4a432bbcc8bad86dd7dbdb35e801b1cd 434 Pfam PF00285 Citrate synthase, C-terminal domain 50 419 4.4E-129 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 ALFP_0158 c6096a6de89bd4b3cc593e7d2622ae62 403 Gene3D G3DSA:3.40.50.10540 10 396 4.2E-132 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_0158 c6096a6de89bd4b3cc593e7d2622ae62 403 Pfam PF02515 CoA-transferase family III 11 379 5.6E-126 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 ALFP_0158 c6096a6de89bd4b3cc593e7d2622ae62 403 SUPERFAMILY SSF89796 9 402 4.19E-134 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_0158 c6096a6de89bd4b3cc593e7d2622ae62 403 Gene3D G3DSA:3.30.1540.10 238 330 4.2E-132 T 12-10-2018 ALFP_1273 be7f56cbf95c8f712341715a0d4a9d38 219 SUPERFAMILY SSF51735 1 216 1.18E-55 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1273 be7f56cbf95c8f712341715a0d4a9d38 219 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 106 122 6.8E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1273 be7f56cbf95c8f712341715a0d4a9d38 219 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 170 6.8E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1273 be7f56cbf95c8f712341715a0d4a9d38 219 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 59 70 6.8E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1273 be7f56cbf95c8f712341715a0d4a9d38 219 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 6.8E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1273 be7f56cbf95c8f712341715a0d4a9d38 219 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 199 6.8E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1273 be7f56cbf95c8f712341715a0d4a9d38 219 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 151 6.8E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1273 be7f56cbf95c8f712341715a0d4a9d38 219 Gene3D G3DSA:3.40.50.720 1 219 3.8E-60 T 12-10-2018 ALFP_1273 be7f56cbf95c8f712341715a0d4a9d38 219 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 1 216 2.7E-46 T 12-10-2018 ALFP_1044 436add3765b8f912c679d7f8c4e2103d 764 SUPERFAMILY SSF51735 166 445 2.99E-84 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1044 436add3765b8f912c679d7f8c4e2103d 764 SMART SM01274 20 154 2.3E-77 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 ALFP_1044 436add3765b8f912c679d7f8c4e2103d 764 Pfam PF03949 Malic enzyme, NAD binding domain 168 363 4.6E-20 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 ALFP_1044 436add3765b8f912c679d7f8c4e2103d 764 Gene3D G3DSA:3.40.50.10950 442 756 5.8E-99 T 12-10-2018 ALFP_1044 436add3765b8f912c679d7f8c4e2103d 764 SUPERFAMILY SSF53659 432 756 8.63E-90 T 12-10-2018 ALFP_1044 436add3765b8f912c679d7f8c4e2103d 764 SUPERFAMILY SSF53223 13 164 4.24E-50 T 12-10-2018 ALFP_1044 436add3765b8f912c679d7f8c4e2103d 764 PIRSF PIRSF036684 1 761 0.0 T 12-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 ALFP_1044 436add3765b8f912c679d7f8c4e2103d 764 Gene3D G3DSA:3.40.50.10380 2 163 1.9E-65 T 12-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 ALFP_1044 436add3765b8f912c679d7f8c4e2103d 764 Pfam PF00390 Malic enzyme, N-terminal domain 21 154 3.5E-28 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 ALFP_1044 436add3765b8f912c679d7f8c4e2103d 764 Gene3D G3DSA:3.40.50.720 164 441 8.3E-81 T 12-10-2018 ALFP_1044 436add3765b8f912c679d7f8c4e2103d 764 Gene3D G3DSA:3.40.50.10750 575 729 5.8E-99 T 12-10-2018 ALFP_1044 436add3765b8f912c679d7f8c4e2103d 764 SMART SM00919 166 403 2.3E-137 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 ALFP_1044 436add3765b8f912c679d7f8c4e2103d 764 Pfam PF01515 Phosphate acetyl/butaryl transferase 433 753 9.8E-99 T 12-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 ALFP_0175 f565e606eb8dcc98c45e4adddd7dd616 147 Pfam PF04343 Protein of unknown function, DUF488 8 115 4.9E-17 T 12-10-2018 IPR007438 Protein of unknown function DUF488 ALFP_2595 ae3751bcc792fd5b2e8bef7580d1ac06 324 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 87 1.9E-6 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ALFP_2595 ae3751bcc792fd5b2e8bef7580d1ac06 324 Gene3D G3DSA:3.90.180.10 13 322 6.2E-101 T 12-10-2018 ALFP_2595 ae3751bcc792fd5b2e8bef7580d1ac06 324 SUPERFAMILY SSF50129 1 140 1.98E-39 T 12-10-2018 IPR011032 GroES-like superfamily ALFP_2595 ae3751bcc792fd5b2e8bef7580d1ac06 324 Pfam PF00107 Zinc-binding dehydrogenase 151 277 2.6E-25 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 ALFP_2595 ae3751bcc792fd5b2e8bef7580d1ac06 324 SMART SM00829 10 322 1.0E-42 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 ALFP_2595 ae3751bcc792fd5b2e8bef7580d1ac06 324 Gene3D G3DSA:3.40.50.720 120 261 6.2E-101 T 12-10-2018 ALFP_2595 ae3751bcc792fd5b2e8bef7580d1ac06 324 SUPERFAMILY SSF51735 111 286 2.94E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2595 ae3751bcc792fd5b2e8bef7580d1ac06 324 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 1 322 6.7E-143 T 12-10-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 ALFP_3620 f869ff996db548b0ec41cc7f9175f21b 146 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 31 145 1.3E-30 T 12-10-2018 IPR021131 Ribosomal protein L18e/L15P ALFP_3620 f869ff996db548b0ec41cc7f9175f21b 146 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 5 145 1.7E-47 T 12-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3620 f869ff996db548b0ec41cc7f9175f21b 146 Gene3D G3DSA:3.100.10.10 71 146 9.7E-14 T 12-10-2018 ALFP_3620 f869ff996db548b0ec41cc7f9175f21b 146 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 6 146 19.731 T 12-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 ALFP_3620 f869ff996db548b0ec41cc7f9175f21b 146 SUPERFAMILY SSF52080 7 145 9.68E-46 T 12-10-2018 IPR036227 Ribosomal L18e/L15P superfamily ALFP_0522 6c5bd1aab183497216764e57c1963bec 213 SUPERFAMILY SSF109604 21 212 8.37E-56 T 12-10-2018 ALFP_0522 6c5bd1aab183497216764e57c1963bec 213 Pfam PF01966 HD domain 31 132 4.2E-11 T 12-10-2018 IPR006674 HD domain ALFP_0522 6c5bd1aab183497216764e57c1963bec 213 Gene3D G3DSA:1.10.3210.50 10 213 7.0E-67 T 12-10-2018 ALFP_0522 6c5bd1aab183497216764e57c1963bec 213 SMART SM00471 25 142 7.1E-4 T 12-10-2018 IPR003607 HD/PDEase domain ALFP_2896 b19d759d9387ba2f4db096ec4edfb8b0 388 Gene3D G3DSA:3.90.870.10 2 219 2.3E-85 T 12-10-2018 ALFP_2896 b19d759d9387ba2f4db096ec4edfb8b0 388 PIRSF PIRSF001259 16 384 2.2E-111 T 12-10-2018 ALFP_2896 b19d759d9387ba2f4db096ec4edfb8b0 388 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 22 212 4.4E-80 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 ALFP_2896 b19d759d9387ba2f4db096ec4edfb8b0 388 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 19 213 4.6E-72 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 ALFP_2896 b19d759d9387ba2f4db096ec4edfb8b0 388 Gene3D G3DSA:3.40.50.10990 220 382 6.2E-22 T 12-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 ALFP_2896 b19d759d9387ba2f4db096ec4edfb8b0 388 SUPERFAMILY SSF55821 17 217 4.35E-84 T 12-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily ALFP_2896 b19d759d9387ba2f4db096ec4edfb8b0 388 Pfam PF00925 GTP cyclohydrolase II 225 380 1.5E-31 T 12-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 ALFP_2896 b19d759d9387ba2f4db096ec4edfb8b0 388 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 15 217 38.082 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 ALFP_2896 b19d759d9387ba2f4db096ec4edfb8b0 388 SUPERFAMILY SSF142695 218 381 4.18E-41 T 12-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 ALFP_1438 7498494e9f2437c20458a2f6267baf8c 198 SUPERFAMILY SSF53328 2 184 1.57E-59 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ALFP_1438 7498494e9f2437c20458a2f6267baf8c 198 Pfam PF00551 Formyl transferase 2 168 5.4E-50 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ALFP_1438 7498494e9f2437c20458a2f6267baf8c 198 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 174 26.092 T 12-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 ALFP_1438 7498494e9f2437c20458a2f6267baf8c 198 Gene3D G3DSA:3.40.50.170 1 193 4.3E-69 T 12-10-2018 ALFP_1438 7498494e9f2437c20458a2f6267baf8c 198 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 1 178 5.8E-62 T 12-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 ALFP_2948 4d2b3b6e9d0d03d29ff56754210c3cda 425 Gene3D G3DSA:3.30.390.30 323 422 4.5E-15 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 ALFP_2948 4d2b3b6e9d0d03d29ff56754210c3cda 425 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 309 5.0E-59 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ALFP_2948 4d2b3b6e9d0d03d29ff56754210c3cda 425 SUPERFAMILY SSF51905 1 319 3.82E-41 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2948 4d2b3b6e9d0d03d29ff56754210c3cda 425 Pfam PF14759 Reductase C-terminal 328 415 2.4E-16 T 12-10-2018 IPR028202 Reductase, C-terminal ALFP_2948 4d2b3b6e9d0d03d29ff56754210c3cda 425 Gene3D G3DSA:3.50.50.60 116 243 1.4E-94 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2948 4d2b3b6e9d0d03d29ff56754210c3cda 425 Gene3D G3DSA:3.50.50.60 7 310 1.4E-94 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2948 4d2b3b6e9d0d03d29ff56754210c3cda 425 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 1.5E-21 T 12-10-2018 ALFP_2948 4d2b3b6e9d0d03d29ff56754210c3cda 425 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.5E-21 T 12-10-2018 ALFP_2948 4d2b3b6e9d0d03d29ff56754210c3cda 425 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 286 1.5E-21 T 12-10-2018 ALFP_2948 4d2b3b6e9d0d03d29ff56754210c3cda 425 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 1.5E-21 T 12-10-2018 ALFP_2948 4d2b3b6e9d0d03d29ff56754210c3cda 425 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 1.5E-21 T 12-10-2018 ALFP_2948 4d2b3b6e9d0d03d29ff56754210c3cda 425 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 8.1E-17 T 12-10-2018 ALFP_2948 4d2b3b6e9d0d03d29ff56754210c3cda 425 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 237 251 8.1E-17 T 12-10-2018 ALFP_2948 4d2b3b6e9d0d03d29ff56754210c3cda 425 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 148 173 8.1E-17 T 12-10-2018 ALFP_2948 4d2b3b6e9d0d03d29ff56754210c3cda 425 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 279 286 8.1E-17 T 12-10-2018 ALFP_2948 4d2b3b6e9d0d03d29ff56754210c3cda 425 SUPERFAMILY SSF55424 321 418 1.13E-15 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 ALFP_3135 4d4de9cb56be2a1421efd56fb20ba367 385 ProSitePatterns PS00902 Glutamate 5-kinase signature. 217 234 - T 12-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 ALFP_3135 4d4de9cb56be2a1421efd56fb20ba367 385 Pfam PF01472 PUA domain 287 359 4.4E-19 T 12-10-2018 IPR002478 PUA domain GO:0003723 ALFP_3135 4d4de9cb56be2a1421efd56fb20ba367 385 Hamap MF_00456 Glutamate 5-kinase [proB]. 15 272 36.163 T 12-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 ALFP_3135 4d4de9cb56be2a1421efd56fb20ba367 385 SUPERFAMILY SSF53633 15 264 6.94E-69 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily ALFP_3135 4d4de9cb56be2a1421efd56fb20ba367 385 Gene3D G3DSA:3.40.1160.10 5 269 1.1E-91 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily ALFP_3135 4d4de9cb56be2a1421efd56fb20ba367 385 Pfam PF00696 Amino acid kinase family 16 243 5.3E-43 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 ALFP_3135 4d4de9cb56be2a1421efd56fb20ba367 385 Gene3D G3DSA:2.30.130.10 276 377 2.1E-32 T 12-10-2018 IPR036974 PUA domain superfamily GO:0003723 ALFP_3135 4d4de9cb56be2a1421efd56fb20ba367 385 PRINTS PR00474 Glutamate 5-kinase family signature 86 114 9.6E-50 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 ALFP_3135 4d4de9cb56be2a1421efd56fb20ba367 385 PRINTS PR00474 Glutamate 5-kinase family signature 126 147 9.6E-50 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 ALFP_3135 4d4de9cb56be2a1421efd56fb20ba367 385 PRINTS PR00474 Glutamate 5-kinase family signature 52 66 9.6E-50 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 ALFP_3135 4d4de9cb56be2a1421efd56fb20ba367 385 PRINTS PR00474 Glutamate 5-kinase family signature 219 239 9.6E-50 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 ALFP_3135 4d4de9cb56be2a1421efd56fb20ba367 385 PRINTS PR00474 Glutamate 5-kinase family signature 158 185 9.6E-50 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 ALFP_3135 4d4de9cb56be2a1421efd56fb20ba367 385 SUPERFAMILY SSF88697 287 377 2.1E-22 T 12-10-2018 IPR015947 PUA-like superfamily ALFP_3135 4d4de9cb56be2a1421efd56fb20ba367 385 TIGRFAM TIGR01027 proB: glutamate 5-kinase 15 377 4.9E-128 T 12-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 ALFP_3135 4d4de9cb56be2a1421efd56fb20ba367 385 SMART SM00359 287 370 3.8E-13 T 12-10-2018 IPR002478 PUA domain GO:0003723 ALFP_3135 4d4de9cb56be2a1421efd56fb20ba367 385 PIRSF PIRSF000729 10 378 8.9E-127 T 12-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 ALFP_0021 1e159f807f5523f37bc69828ff8f1c80 321 PIRSF PIRSF017082 1 321 2.5E-82 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0021 1e159f807f5523f37bc69828ff8f1c80 321 Gene3D G3DSA:3.40.190.10 122 246 1.9E-108 T 12-10-2018 ALFP_0021 1e159f807f5523f37bc69828ff8f1c80 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 44 317 6.1E-88 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0021 1e159f807f5523f37bc69828ff8f1c80 321 Gene3D G3DSA:3.40.190.150 25 311 1.9E-108 T 12-10-2018 ALFP_0021 1e159f807f5523f37bc69828ff8f1c80 321 SUPERFAMILY SSF53850 105 281 8.39E-13 T 12-10-2018 ALFP_0939 f67570ce67610b2904ca8326625d4b59 353 SMART SM00507 284 344 5.3E-9 T 12-10-2018 IPR003615 HNH nuclease ALFP_0939 f67570ce67610b2904ca8326625d4b59 353 Pfam PF01844 HNH endonuclease 297 348 1.3E-12 T 12-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 ALFP_0114 981361deb2e6831537e4f14a5abbea5f 297 Gene3D G3DSA:1.10.10.10 3 89 5.1E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0114 981361deb2e6831537e4f14a5abbea5f 297 Pfam PF03466 LysR substrate binding domain 90 292 6.9E-39 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0114 981361deb2e6831537e4f14a5abbea5f 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.1E-12 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0114 981361deb2e6831537e4f14a5abbea5f 297 SUPERFAMILY SSF46785 1 113 6.8E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0114 981361deb2e6831537e4f14a5abbea5f 297 Gene3D G3DSA:3.40.190.290 92 296 1.6E-38 T 12-10-2018 ALFP_0114 981361deb2e6831537e4f14a5abbea5f 297 SUPERFAMILY SSF53850 91 292 4.46E-39 T 12-10-2018 ALFP_0713 365dac8cf7bdb642523c3238fe6b0459 216 Gene3D G3DSA:3.40.50.2020 2 208 4.1E-70 T 12-10-2018 ALFP_0713 365dac8cf7bdb642523c3238fe6b0459 216 SUPERFAMILY SSF53271 3 206 1.7E-65 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like ALFP_0713 365dac8cf7bdb642523c3238fe6b0459 216 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 8.0E-64 T 12-10-2018 ALFP_0713 365dac8cf7bdb642523c3238fe6b0459 216 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 43.569 T 12-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 ALFP_0713 365dac8cf7bdb642523c3238fe6b0459 216 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 207 2.2E-86 T 12-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 ALFP_0472 9afda8eb3038751829daf81c500d2c61 267 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 29 46 - T 12-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 ALFP_0472 9afda8eb3038751829daf81c500d2c61 267 PIRSF PIRSF000097 1 264 3.0E-66 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_0472 9afda8eb3038751829daf81c500d2c61 267 PRINTS PR00069 Aldo-keto reductase signature 81 99 6.0E-44 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_0472 9afda8eb3038751829daf81c500d2c61 267 PRINTS PR00069 Aldo-keto reductase signature 149 178 6.0E-44 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_0472 9afda8eb3038751829daf81c500d2c61 267 PRINTS PR00069 Aldo-keto reductase signature 186 210 6.0E-44 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_0472 9afda8eb3038751829daf81c500d2c61 267 PRINTS PR00069 Aldo-keto reductase signature 25 49 6.0E-44 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_0472 9afda8eb3038751829daf81c500d2c61 267 PRINTS PR00069 Aldo-keto reductase signature 114 131 6.0E-44 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_0472 9afda8eb3038751829daf81c500d2c61 267 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 114 131 - T 12-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 ALFP_0472 9afda8eb3038751829daf81c500d2c61 267 Pfam PF00248 Aldo/keto reductase family 6 251 5.3E-52 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain ALFP_0472 9afda8eb3038751829daf81c500d2c61 267 Gene3D G3DSA:3.20.20.100 1 267 1.2E-92 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily ALFP_0472 9afda8eb3038751829daf81c500d2c61 267 SUPERFAMILY SSF51430 2 259 3.93E-83 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily ALFP_3078 02d890bef719bfa0153f56155974affb 184 Gene3D G3DSA:1.10.60.30 25 102 1.5E-25 T 12-10-2018 ALFP_3078 02d890bef719bfa0153f56155974affb 184 PIRSF PIRSF016183 2 183 1.6E-58 T 12-10-2018 IPR006839 Ribosome-associated, YjgA ALFP_3078 02d890bef719bfa0153f56155974affb 184 SUPERFAMILY SSF158710 25 178 1.96E-43 T 12-10-2018 IPR023153 PSPTO4464-like domain superfamily ALFP_3078 02d890bef719bfa0153f56155974affb 184 Gene3D G3DSA:1.10.60.30 104 182 7.3E-20 T 12-10-2018 ALFP_3078 02d890bef719bfa0153f56155974affb 184 Pfam PF04751 Protein of unknown function (DUF615) 15 175 4.4E-52 T 12-10-2018 IPR006839 Ribosome-associated, YjgA ALFP_3324 227309502b18a7dbdc3ec5eabd26479a 179 Pfam PF16242 Pyridoxamine 5'-phosphate oxidase like 9 161 8.5E-38 T 12-10-2018 IPR038725 General stress protein, FMN-binding split barrel domain ALFP_3324 227309502b18a7dbdc3ec5eabd26479a 179 Gene3D G3DSA:2.30.110.10 7 172 1.6E-43 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 ALFP_3324 227309502b18a7dbdc3ec5eabd26479a 179 SUPERFAMILY SSF50475 8 146 5.18E-31 T 12-10-2018 ALFP_2023 82a5fc0c03e58bf0b5b443c65aa06206 284 Gene3D G3DSA:3.40.50.150 1 282 2.6E-99 T 12-10-2018 ALFP_2023 82a5fc0c03e58bf0b5b443c65aa06206 284 SUPERFAMILY SSF53335 9 280 1.79E-83 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_2023 82a5fc0c03e58bf0b5b443c65aa06206 284 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 277 3.8E-70 T 12-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 ALFP_2023 82a5fc0c03e58bf0b5b443c65aa06206 284 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 271 37.534 T 12-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 ALFP_3120 05a743c2c675406721b94802cce1f492 149 SUPERFAMILY SSF51391 8 141 8.63E-33 T 12-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 ALFP_3120 05a743c2c675406721b94802cce1f492 149 Gene3D G3DSA:3.20.20.70 6 149 3.8E-31 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_3120 05a743c2c675406721b94802cce1f492 149 Pfam PF02581 Thiamine monophosphate synthase 13 141 1.7E-31 T 12-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 ALFP_3127 8e52a8de3cc4a26cff4b27b9fc534421 176 ProSitePatterns PS01117 MarR-type HTH domain signature. 90 124 - T 12-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site ALFP_3127 8e52a8de3cc4a26cff4b27b9fc534421 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 92 107 9.5E-12 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_3127 8e52a8de3cc4a26cff4b27b9fc534421 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 91 9.5E-12 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_3127 8e52a8de3cc4a26cff4b27b9fc534421 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 141 161 9.5E-12 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_3127 8e52a8de3cc4a26cff4b27b9fc534421 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 111 127 9.5E-12 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_3127 8e52a8de3cc4a26cff4b27b9fc534421 176 SUPERFAMILY SSF46785 24 161 9.26E-31 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3127 8e52a8de3cc4a26cff4b27b9fc534421 176 Gene3D G3DSA:1.10.10.10 17 163 2.8E-35 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3127 8e52a8de3cc4a26cff4b27b9fc534421 176 Pfam PF01047 MarR family 58 115 2.8E-13 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_3127 8e52a8de3cc4a26cff4b27b9fc534421 176 SMART SM00347 50 151 1.7E-22 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2361 c45f3e355fbd2a37383cb4e4f7166bf9 1138 Pfam PF08463 EcoEI R protein C-terminal 986 1129 3.0E-18 T 12-10-2018 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 ALFP_2361 c45f3e355fbd2a37383cb4e4f7166bf9 1138 Gene3D G3DSA:3.90.1570.30 186 334 4.7E-31 T 12-10-2018 ALFP_2361 c45f3e355fbd2a37383cb4e4f7166bf9 1138 SUPERFAMILY SSF52540 374 739 1.7E-15 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2361 c45f3e355fbd2a37383cb4e4f7166bf9 1138 Gene3D G3DSA:3.40.50.300 528 754 7.7E-57 T 12-10-2018 ALFP_2361 c45f3e355fbd2a37383cb4e4f7166bf9 1138 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 238 314 9.7E-7 T 12-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 ALFP_2361 c45f3e355fbd2a37383cb4e4f7166bf9 1138 SUPERFAMILY SSF52540 304 543 2.22E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2361 c45f3e355fbd2a37383cb4e4f7166bf9 1138 Gene3D G3DSA:3.40.50.300 335 520 7.8E-51 T 12-10-2018 ALFP_2361 c45f3e355fbd2a37383cb4e4f7166bf9 1138 Pfam PF00271 Helicase conserved C-terminal domain 620 717 1.4E-7 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_2361 c45f3e355fbd2a37383cb4e4f7166bf9 1138 SMART SM00487 348 533 2.7E-20 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain ALFP_2361 c45f3e355fbd2a37383cb4e4f7166bf9 1138 Pfam PF13643 Domain of unknown function (DUF4145) 20 109 2.9E-12 T 12-10-2018 IPR025285 Domain of unknown function DUF4145 ALFP_2361 c45f3e355fbd2a37383cb4e4f7166bf9 1138 Pfam PF04851 Type III restriction enzyme, res subunit 352 506 1.6E-34 T 12-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 ALFP_0031 52859838f62b63d80cfad5f8ffdf1422 501 Gene3D G3DSA:2.102.10.10 36 171 2.2E-33 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_0031 52859838f62b63d80cfad5f8ffdf1422 501 Pfam PF00355 Rieske [2Fe-2S] domain 41 120 1.4E-14 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ALFP_0031 52859838f62b63d80cfad5f8ffdf1422 501 SUPERFAMILY SSF50022 32 153 5.37E-33 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_0031 52859838f62b63d80cfad5f8ffdf1422 501 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 81 103 - T 12-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 ALFP_0031 52859838f62b63d80cfad5f8ffdf1422 501 SUPERFAMILY SSF55961 144 416 2.75E-23 T 12-10-2018 ALFP_0612 3d67cc3ccc25a347161c6f991935951b 434 TIGRFAM TIGR01015 hmgA: homogentisate 1,2-dioxygenase 4 428 4.0E-193 T 12-10-2018 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 ALFP_0612 3d67cc3ccc25a347161c6f991935951b 434 SUPERFAMILY SSF51182 4 432 4.45E-164 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_0612 3d67cc3ccc25a347161c6f991935951b 434 Gene3D G3DSA:2.60.120.10 262 398 3.8E-57 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_0612 3d67cc3ccc25a347161c6f991935951b 434 Pfam PF04209 homogentisate 1,2-dioxygenase 5 428 2.5E-195 T 12-10-2018 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 ALFP_0612 3d67cc3ccc25a347161c6f991935951b 434 Hamap MF_00334 Homogentisate 1,2-dioxygenase [hmgA]. 5 430 68.283 T 12-10-2018 IPR022950 Homogentisate 1,2-dioxygenase, bacterial GO:0004411|GO:0006559|GO:0006572|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5 ALFP_1195 9cb5de82c116a92c7677e504a4aa662b 431 Pfam PF13657 HipA N-terminal domain 4 105 9.2E-21 T 12-10-2018 IPR017508 HipA, N-terminal subdomain 1 ALFP_1195 9cb5de82c116a92c7677e504a4aa662b 431 TIGRFAM TIGR03071 couple_hipA: HipA N-terminal domain 4 105 1.3E-27 T 12-10-2018 IPR017508 HipA, N-terminal subdomain 1 ALFP_1195 9cb5de82c116a92c7677e504a4aa662b 431 Pfam PF07804 HipA-like C-terminal domain 149 392 1.4E-48 T 12-10-2018 IPR012893 HipA-like, C-terminal ALFP_0090 873c14ad103033d3f79088fccae3a8e8 203 SUPERFAMILY SSF50475 46 196 1.47E-45 T 12-10-2018 ALFP_0090 873c14ad103033d3f79088fccae3a8e8 203 Gene3D G3DSA:2.30.110.10 20 200 1.5E-47 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 ALFP_0090 873c14ad103033d3f79088fccae3a8e8 203 SMART SM00903 50 195 5.8E-51 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 ALFP_0090 873c14ad103033d3f79088fccae3a8e8 203 Pfam PF01613 Flavin reductase like domain 51 196 2.5E-36 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 ALFP_3348 48494c34a03e7d57dc3be062ddea5561 639 Gene3D G3DSA:3.40.50.300 13 176 5.1E-42 T 12-10-2018 ALFP_3348 48494c34a03e7d57dc3be062ddea5561 639 SUPERFAMILY SSF46785 439 508 2.99E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3348 48494c34a03e7d57dc3be062ddea5561 639 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 26 41 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site ALFP_3348 48494c34a03e7d57dc3be062ddea5561 639 Pfam PF09107 Elongation factor SelB, winged helix 590 630 3.8E-19 T 12-10-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 ALFP_3348 48494c34a03e7d57dc3be062ddea5561 639 SUPERFAMILY SSF50447 176 264 1.52E-19 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily ALFP_3348 48494c34a03e7d57dc3be062ddea5561 639 SUPERFAMILY SSF52540 2 194 2.44E-36 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3348 48494c34a03e7d57dc3be062ddea5561 639 Gene3D G3DSA:1.10.10.10 573 632 5.0E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3348 48494c34a03e7d57dc3be062ddea5561 639 Gene3D G3DSA:2.40.30.10 177 291 2.7E-27 T 12-10-2018 ALFP_3348 48494c34a03e7d57dc3be062ddea5561 639 Pfam PF03144 Elongation factor Tu domain 2 193 262 1.0E-7 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 ALFP_3348 48494c34a03e7d57dc3be062ddea5561 639 SUPERFAMILY SSF50465 272 368 2.67E-19 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal ALFP_3348 48494c34a03e7d57dc3be062ddea5561 639 Gene3D G3DSA:1.10.10.2770 441 572 3.2E-30 T 12-10-2018 ALFP_3348 48494c34a03e7d57dc3be062ddea5561 639 Pfam PF00009 Elongation factor Tu GTP binding domain 2 134 1.2E-25 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ALFP_3348 48494c34a03e7d57dc3be062ddea5561 639 SUPERFAMILY SSF46785 510 573 1.27E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3348 48494c34a03e7d57dc3be062ddea5561 639 SUPERFAMILY SSF46785 578 632 9.93E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3348 48494c34a03e7d57dc3be062ddea5561 639 Pfam PF09106 Elongation factor SelB, winged helix 451 502 3.3E-17 T 12-10-2018 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 ALFP_3348 48494c34a03e7d57dc3be062ddea5561 639 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 1 631 3.2E-128 T 12-10-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 ALFP_2441 940273d3be9aa285c9fe875fdbdf4bba 356 SMART SM01329 6 348 4.3E-173 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 ALFP_2441 940273d3be9aa285c9fe875fdbdf4bba 356 Gene3D G3DSA:3.40.718.10 1 356 1.0E-134 T 12-10-2018 ALFP_2441 940273d3be9aa285c9fe875fdbdf4bba 356 SUPERFAMILY SSF53659 3 352 3.65E-116 T 12-10-2018 ALFP_2441 940273d3be9aa285c9fe875fdbdf4bba 356 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 348 1.4E-86 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 ALFP_2441 940273d3be9aa285c9fe875fdbdf4bba 356 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 242 261 - T 12-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 ALFP_2441 940273d3be9aa285c9fe875fdbdf4bba 356 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 3 351 3.6E-166 T 12-10-2018 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 ALFP_0936 c49da9ea195e114e8df7821d2b6dfe62 446 Gene3D G3DSA:3.40.640.10 68 343 2.8E-139 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_0936 c49da9ea195e114e8df7821d2b6dfe62 446 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 254 291 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_0936 c49da9ea195e114e8df7821d2b6dfe62 446 PIRSF PIRSF000521 12 445 1.9E-34 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_0936 c49da9ea195e114e8df7821d2b6dfe62 446 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 17 436 3.6E-154 T 12-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 ALFP_0936 c49da9ea195e114e8df7821d2b6dfe62 446 Gene3D G3DSA:3.90.1150.10 15 432 2.8E-139 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_0936 c49da9ea195e114e8df7821d2b6dfe62 446 Pfam PF00202 Aminotransferase class-III 28 437 5.1E-112 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_0936 c49da9ea195e114e8df7821d2b6dfe62 446 SUPERFAMILY SSF53383 14 444 9.99E-116 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2952 000cc6dc41b393c893b0143996365474 190 Gene3D G3DSA:3.40.50.850 3 189 1.4E-58 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_2952 000cc6dc41b393c893b0143996365474 190 SUPERFAMILY SSF52499 8 186 1.24E-53 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_2952 000cc6dc41b393c893b0143996365474 190 Pfam PF00857 Isochorismatase family 8 183 5.5E-44 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 ALFP_1351 673166c6e091363b2830543152d4f14e 176 SUPERFAMILY SSF47413 4 64 1.01E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_1351 673166c6e091363b2830543152d4f14e 176 Pfam PF07883 Cupin domain 104 169 5.4E-16 T 12-10-2018 IPR013096 Cupin 2, conserved barrel ALFP_1351 673166c6e091363b2830543152d4f14e 176 Gene3D G3DSA:2.60.120.10 93 175 4.7E-19 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_1351 673166c6e091363b2830543152d4f14e 176 SMART SM00530 5 60 8.4E-14 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_1351 673166c6e091363b2830543152d4f14e 176 Gene3D G3DSA:1.10.260.40 2 85 2.1E-17 T 12-10-2018 ALFP_1351 673166c6e091363b2830543152d4f14e 176 Pfam PF01381 Helix-turn-helix 6 57 1.2E-13 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_1351 673166c6e091363b2830543152d4f14e 176 SUPERFAMILY SSF51182 45 175 1.88E-26 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_0451 b93bc87d1bb40d874f2961f5d7bfd8c5 1068 Pfam PF00271 Helicase conserved C-terminal domain 682 808 2.0E-11 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_0451 b93bc87d1bb40d874f2961f5d7bfd8c5 1068 SUPERFAMILY SSF52540 233 821 6.87E-33 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0451 b93bc87d1bb40d874f2961f5d7bfd8c5 1068 SMART SM00487 214 409 6.9E-12 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain ALFP_0451 b93bc87d1bb40d874f2961f5d7bfd8c5 1068 SMART SM00490 702 808 7.6E-7 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_0451 b93bc87d1bb40d874f2961f5d7bfd8c5 1068 Pfam PF00176 SNF2 family N-terminal domain 226 382 4.9E-13 T 12-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 ALFP_0451 b93bc87d1bb40d874f2961f5d7bfd8c5 1068 Gene3D G3DSA:3.40.50.300 638 901 1.4E-26 T 12-10-2018 ALFP_0451 b93bc87d1bb40d874f2961f5d7bfd8c5 1068 Gene3D G3DSA:3.40.50.10810 216 489 2.1E-26 T 12-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily ALFP_3451 e99d392e4ddd9e80fd93c318b95e086a 334 Gene3D G3DSA:3.40.190.10 30 300 3.6E-112 T 12-10-2018 ALFP_3451 e99d392e4ddd9e80fd93c318b95e086a 334 SUPERFAMILY SSF53850 24 331 4.48E-72 T 12-10-2018 ALFP_3451 e99d392e4ddd9e80fd93c318b95e086a 334 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 23 331 1.9E-117 T 12-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 ALFP_3451 e99d392e4ddd9e80fd93c318b95e086a 334 Gene3D G3DSA:3.40.190.10 117 330 3.6E-112 T 12-10-2018 ALFP_3451 e99d392e4ddd9e80fd93c318b95e086a 334 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 148 156 - T 12-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 ALFP_3451 e99d392e4ddd9e80fd93c318b95e086a 334 Pfam PF13531 Bacterial extracellular solute-binding protein 38 284 3.9E-34 T 12-10-2018 ALFP_2489 1eb0024a9c9262c07bd3b1b5c9e5cfda 522 Gene3D G3DSA:1.20.1720.10 25 257 4.8E-46 T 12-10-2018 ALFP_2489 1eb0024a9c9262c07bd3b1b5c9e5cfda 522 Pfam PF07690 Major Facilitator Superfamily 28 421 1.3E-53 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_2489 1eb0024a9c9262c07bd3b1b5c9e5cfda 522 Gene3D G3DSA:1.20.1250.20 271 449 1.1E-21 T 12-10-2018 ALFP_2489 1eb0024a9c9262c07bd3b1b5c9e5cfda 522 SUPERFAMILY SSF103473 25 511 8.89E-67 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_0509 f54b77c6bb5bdfcf57f2cc0582ccbe29 368 Gene3D G3DSA:2.40.50.140 275 331 1.8E-9 T 12-10-2018 ALFP_0509 f54b77c6bb5bdfcf57f2cc0582ccbe29 368 Gene3D G3DSA:2.40.50.100 260 344 1.8E-9 T 12-10-2018 ALFP_0509 f54b77c6bb5bdfcf57f2cc0582ccbe29 368 Gene3D G3DSA:3.40.50.300 1 240 2.3E-75 T 12-10-2018 ALFP_0509 f54b77c6bb5bdfcf57f2cc0582ccbe29 368 Pfam PF00005 ABC transporter 21 163 1.1E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0509 f54b77c6bb5bdfcf57f2cc0582ccbe29 368 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0509 f54b77c6bb5bdfcf57f2cc0582ccbe29 368 Pfam PF08402 TOBE domain 268 339 5.0E-15 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 ALFP_0509 f54b77c6bb5bdfcf57f2cc0582ccbe29 368 SUPERFAMILY SSF52540 6 244 1.5E-80 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0509 f54b77c6bb5bdfcf57f2cc0582ccbe29 368 SUPERFAMILY SSF50331 243 347 1.05E-19 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal ALFP_0509 f54b77c6bb5bdfcf57f2cc0582ccbe29 368 SMART SM00382 30 213 1.4E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3700 bc4c275eacd2179a2bb63438f5c80db5 279 Gene3D G3DSA:3.40.50.1100 1 268 1.9E-97 T 12-10-2018 ALFP_3700 bc4c275eacd2179a2bb63438f5c80db5 279 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 2 15 - T 12-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 ALFP_3700 bc4c275eacd2179a2bb63438f5c80db5 279 Gene3D G3DSA:3.40.50.1100 14 103 1.9E-97 T 12-10-2018 ALFP_3700 bc4c275eacd2179a2bb63438f5c80db5 279 SUPERFAMILY SSF53686 2 272 1.2E-62 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme ALFP_3700 bc4c275eacd2179a2bb63438f5c80db5 279 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 2 263 8.5E-63 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme ALFP_3261 23c4e5eebf5751755919748ec7985bee 304 Pfam PF08241 Methyltransferase domain 53 160 4.7E-18 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 ALFP_3261 23c4e5eebf5751755919748ec7985bee 304 SUPERFAMILY SSF53335 34 233 2.01E-29 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_3261 23c4e5eebf5751755919748ec7985bee 304 Gene3D G3DSA:3.40.50.150 16 230 1.7E-27 T 12-10-2018 ALFP_3458 0506909230169b7462cae1d9b2129cd5 371 Gene3D G3DSA:3.30.390.10 1 111 6.9E-41 T 12-10-2018 IPR029017 Enolase-like, N-terminal ALFP_3458 0506909230169b7462cae1d9b2129cd5 371 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 193 224 - T 12-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 ALFP_3458 0506909230169b7462cae1d9b2129cd5 371 Gene3D G3DSA:3.20.20.120 112 362 3.7E-55 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily ALFP_3458 0506909230169b7462cae1d9b2129cd5 371 SMART SM00922 146 243 9.6E-11 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal ALFP_3458 0506909230169b7462cae1d9b2129cd5 371 SUPERFAMILY SSF51604 107 360 3.8E-47 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily ALFP_3458 0506909230169b7462cae1d9b2129cd5 371 SUPERFAMILY SSF54826 5 122 2.47E-18 T 12-10-2018 ALFP_3458 0506909230169b7462cae1d9b2129cd5 371 Pfam PF13378 Enolase C-terminal domain-like 149 357 4.2E-35 T 12-10-2018 IPR029065 Enolase C-terminal domain-like ALFP_1154 6537d90819ec0f4e59c3b93def9c8502 406 Gene3D G3DSA:1.10.1060.10 2 108 1.3E-9 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 ALFP_1154 6537d90819ec0f4e59c3b93def9c8502 406 Pfam PF13183 4Fe-4S dicluster domain 22 89 9.9E-12 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ALFP_1154 6537d90819ec0f4e59c3b93def9c8502 406 SUPERFAMILY SSF54862 22 117 7.95E-19 T 12-10-2018 ALFP_1154 6537d90819ec0f4e59c3b93def9c8502 406 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site ALFP_1154 6537d90819ec0f4e59c3b93def9c8502 406 PIRSF PIRSF000139 6 406 1.1E-121 T 12-10-2018 ALFP_1154 6537d90819ec0f4e59c3b93def9c8502 406 Pfam PF02754 Cysteine-rich domain 304 386 2.9E-12 T 12-10-2018 IPR004017 Cysteine-rich domain ALFP_1154 6537d90819ec0f4e59c3b93def9c8502 406 Pfam PF02754 Cysteine-rich domain 170 255 3.8E-12 T 12-10-2018 IPR004017 Cysteine-rich domain ALFP_3196 c22f363235343a280d2c5bf9d35b4868 317 SUPERFAMILY SSF143865 18 244 7.72E-7 T 12-10-2018 ALFP_3196 c22f363235343a280d2c5bf9d35b4868 317 SUPERFAMILY SSF144083 251 314 1.96E-16 T 12-10-2018 ALFP_3196 c22f363235343a280d2c5bf9d35b4868 317 Pfam PF01544 CorA-like Mg2+ transporter protein 20 312 6.6E-48 T 12-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 ALFP_3196 c22f363235343a280d2c5bf9d35b4868 317 Gene3D G3DSA:1.20.58.340 240 316 7.7E-20 T 12-10-2018 ALFP_0199 3cc34655e6251080061981365a533e5e 305 Gene3D G3DSA:3.40.190.10 109 230 1.7E-91 T 12-10-2018 ALFP_0199 3cc34655e6251080061981365a533e5e 305 PIRSF PIRSF017082 2 305 9.6E-61 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0199 3cc34655e6251080061981365a533e5e 305 SUPERFAMILY SSF53850 101 261 2.17E-10 T 12-10-2018 ALFP_0199 3cc34655e6251080061981365a533e5e 305 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 28 301 3.8E-66 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0199 3cc34655e6251080061981365a533e5e 305 Gene3D G3DSA:3.40.190.150 10 293 1.7E-91 T 12-10-2018 ALFP_2588 61e3e838af60419778f65bef6997e384 203 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 11 172 34.098 T 12-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2588 61e3e838af60419778f65bef6997e384 203 Gene3D G3DSA:3.30.460.80 2 144 4.2E-42 T 12-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2588 61e3e838af60419778f65bef6997e384 203 SUPERFAMILY SSF143243 21 185 3.01E-52 T 12-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2588 61e3e838af60419778f65bef6997e384 203 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 125 146 - T 12-10-2018 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2588 61e3e838af60419778f65bef6997e384 203 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 31 165 3.7E-43 T 12-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2588 61e3e838af60419778f65bef6997e384 203 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 91 152 3.0E-21 T 12-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2588 61e3e838af60419778f65bef6997e384 203 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 31 163 1.2E-39 T 12-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_0892 e4ee07b515db14dbc00efe2dd8a8a834 212 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 199 1.1E-52 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 ALFP_0892 e4ee07b515db14dbc00efe2dd8a8a834 212 SMART SM00855 4 160 1.5E-22 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 ALFP_0892 e4ee07b515db14dbc00efe2dd8a8a834 212 Gene3D G3DSA:3.40.50.1240 2 209 2.8E-54 T 12-10-2018 IPR029033 Histidine phosphatase superfamily ALFP_0892 e4ee07b515db14dbc00efe2dd8a8a834 212 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 7 16 - T 12-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 ALFP_0892 e4ee07b515db14dbc00efe2dd8a8a834 212 PIRSF PIRSF000709 1 164 1.7E-8 T 12-10-2018 ALFP_0892 e4ee07b515db14dbc00efe2dd8a8a834 212 SUPERFAMILY SSF53254 2 207 1.57E-52 T 12-10-2018 IPR029033 Histidine phosphatase superfamily ALFP_3143 812e92ec68c33d446612637b1a30b6db 245 PIRSF PIRSF039085 2 245 2.1E-110 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 ALFP_3143 812e92ec68c33d446612637b1a30b6db 245 Gene3D G3DSA:3.40.50.300 3 245 5.3E-81 T 12-10-2018 ALFP_3143 812e92ec68c33d446612637b1a30b6db 245 SUPERFAMILY SSF52540 5 239 2.9E-82 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3143 812e92ec68c33d446612637b1a30b6db 245 Pfam PF00005 ABC transporter 21 169 5.0E-38 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3143 812e92ec68c33d446612637b1a30b6db 245 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3143 812e92ec68c33d446612637b1a30b6db 245 SMART SM00382 30 217 5.1E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3133 6bfcf9118b5e61ba29c11e665c8ff790 86 Gene3D G3DSA:2.40.50.1030 6 84 8.1E-28 T 12-10-2018 ALFP_3133 6bfcf9118b5e61ba29c11e665c8ff790 86 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 12-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3133 6bfcf9118b5e61ba29c11e665c8ff790 86 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 5.0E-15 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3133 6bfcf9118b5e61ba29c11e665c8ff790 86 SUPERFAMILY SSF110324 2 81 2.06E-32 T 12-10-2018 ALFP_3133 6bfcf9118b5e61ba29c11e665c8ff790 86 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 83 3.3E-38 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3133 6bfcf9118b5e61ba29c11e665c8ff790 86 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 28.164 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3133 6bfcf9118b5e61ba29c11e665c8ff790 86 PRINTS PR00063 Ribosomal protein L27 signature 54 78 9.6E-38 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3133 6bfcf9118b5e61ba29c11e665c8ff790 86 PRINTS PR00063 Ribosomal protein L27 signature 29 53 9.6E-38 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3133 6bfcf9118b5e61ba29c11e665c8ff790 86 PRINTS PR00063 Ribosomal protein L27 signature 4 28 9.6E-38 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3133 6bfcf9118b5e61ba29c11e665c8ff790 86 Pfam PF01016 Ribosomal L27 protein 2 82 2.8E-36 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3663 617ec62727daddaf59e6e9b941bc4e6c 98 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 7 97 22.143 T 12-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 ALFP_3663 617ec62727daddaf59e6e9b941bc4e6c 98 SUPERFAMILY SSF54189 2 91 6.47E-30 T 12-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3663 617ec62727daddaf59e6e9b941bc4e6c 98 Pfam PF00276 Ribosomal protein L23 8 94 3.9E-31 T 12-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 ALFP_3663 617ec62727daddaf59e6e9b941bc4e6c 98 Gene3D G3DSA:3.30.70.330 1 97 1.2E-33 T 12-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily ALFP_3102 06f98bdb95ec37cfda715d28e39451a8 422 Pfam PF11906 Protein of unknown function (DUF3426) 274 417 4.9E-39 T 12-10-2018 IPR021834 Protein of unknown function DUF3426 ALFP_3102 06f98bdb95ec37cfda715d28e39451a8 422 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 4 39 1.1E-5 T 12-10-2018 IPR011723 Zinc finger/thioredoxin putative ALFP_1873 50e3461b7e98f6ea26f211c3223c1578 156 Gene3D G3DSA:3.40.630.30 5 152 3.6E-38 T 12-10-2018 ALFP_1873 50e3461b7e98f6ea26f211c3223c1578 156 Pfam PF13673 Acetyltransferase (GNAT) domain 50 151 2.3E-12 T 12-10-2018 IPR000182 GNAT domain ALFP_1873 50e3461b7e98f6ea26f211c3223c1578 156 SUPERFAMILY SSF55729 9 152 1.75E-30 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_2353 25217e5f879b8524da3831220d2314c0 311 Gene3D G3DSA:3.50.50.60 3 289 4.3E-96 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2353 25217e5f879b8524da3831220d2314c0 311 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 259 277 8.5E-17 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2353 25217e5f879b8524da3831220d2314c0 311 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 139 163 8.5E-17 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2353 25217e5f879b8524da3831220d2314c0 311 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 4 26 8.5E-17 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2353 25217e5f879b8524da3831220d2314c0 311 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 124 136 8.5E-17 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2353 25217e5f879b8524da3831220d2314c0 311 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 102 110 8.5E-17 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ALFP_2353 25217e5f879b8524da3831220d2314c0 311 Gene3D G3DSA:3.50.50.60 115 225 4.3E-96 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2353 25217e5f879b8524da3831220d2314c0 311 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 284 9.7E-23 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ALFP_2353 25217e5f879b8524da3831220d2314c0 311 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.4E-14 T 12-10-2018 ALFP_2353 25217e5f879b8524da3831220d2314c0 311 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 1.4E-14 T 12-10-2018 ALFP_2353 25217e5f879b8524da3831220d2314c0 311 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 249 271 1.4E-14 T 12-10-2018 ALFP_2353 25217e5f879b8524da3831220d2314c0 311 SUPERFAMILY SSF51905 1 293 9.18E-30 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0845 6fb64570e958d708669172d3ba2936a5 312 SUPERFAMILY SSF52540 7 150 1.03E-19 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0845 6fb64570e958d708669172d3ba2936a5 312 Gene3D G3DSA:1.10.20.140 113 184 4.0E-94 T 12-10-2018 ALFP_0845 6fb64570e958d708669172d3ba2936a5 312 Gene3D G3DSA:3.40.50.300 10 289 4.0E-94 T 12-10-2018 ALFP_0845 6fb64570e958d708669172d3ba2936a5 312 Pfam PF01715 IPP transferase 40 287 5.4E-87 T 12-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 ALFP_0845 6fb64570e958d708669172d3ba2936a5 312 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 7 289 1.0E-95 T 12-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 ALFP_0845 6fb64570e958d708669172d3ba2936a5 312 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 6 304 29.119 T 12-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 ALFP_3350 15c1b4856cb94580cf136b7ee317be91 260 SUPERFAMILY SSF53639 26 234 4.32E-61 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily ALFP_3350 15c1b4856cb94580cf136b7ee317be91 260 SMART SM01007 33 211 2.7E-42 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal ALFP_3350 15c1b4856cb94580cf136b7ee317be91 260 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 34 211 1.1E-36 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal ALFP_3350 15c1b4856cb94580cf136b7ee317be91 260 Gene3D G3DSA:3.40.225.10 18 260 1.4E-49 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily ALFP_3432 6de88774ab3fb9b773b667bbc904fd03 215 Pfam PF00117 Glutamine amidotransferase class-I 6 209 1.5E-12 T 12-10-2018 IPR017926 Glutamine amidotransferase ALFP_3432 6de88774ab3fb9b773b667bbc904fd03 215 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 4 212 3.4E-58 T 12-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 ALFP_3432 6de88774ab3fb9b773b667bbc904fd03 215 PIRSF PIRSF000495 2 215 3.6E-63 T 12-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 ALFP_3432 6de88774ab3fb9b773b667bbc904fd03 215 Gene3D G3DSA:3.40.50.880 1 214 1.3E-68 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_3432 6de88774ab3fb9b773b667bbc904fd03 215 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 3 213 33.389 T 12-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 ALFP_3432 6de88774ab3fb9b773b667bbc904fd03 215 SUPERFAMILY SSF52317 3 213 5.5E-49 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_0075 4d7f7d040f2a7cf85c2caf67c572711c 323 Pfam PF00970 Oxidoreductase FAD-binding domain 9 105 1.8E-4 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 ALFP_0075 4d7f7d040f2a7cf85c2caf67c572711c 323 PRINTS PR00409 Phthalate dioxygenase reductase family signature 29 39 1.7E-16 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_0075 4d7f7d040f2a7cf85c2caf67c572711c 323 PRINTS PR00409 Phthalate dioxygenase reductase family signature 143 152 1.7E-16 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_0075 4d7f7d040f2a7cf85c2caf67c572711c 323 PRINTS PR00409 Phthalate dioxygenase reductase family signature 118 137 1.7E-16 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_0075 4d7f7d040f2a7cf85c2caf67c572711c 323 PRINTS PR00409 Phthalate dioxygenase reductase family signature 194 202 1.7E-16 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 ALFP_0075 4d7f7d040f2a7cf85c2caf67c572711c 323 Pfam PF00175 Oxidoreductase NAD-binding domain 119 207 6.5E-9 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ALFP_0075 4d7f7d040f2a7cf85c2caf67c572711c 323 SUPERFAMILY SSF54292 216 321 7.6E-26 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_0075 4d7f7d040f2a7cf85c2caf67c572711c 323 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 243 314 7.9E-11 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_0075 4d7f7d040f2a7cf85c2caf67c572711c 323 Gene3D G3DSA:3.40.50.80 110 226 7.6E-28 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_0075 4d7f7d040f2a7cf85c2caf67c572711c 323 SUPERFAMILY SSF52343 101 230 4.06E-30 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_0075 4d7f7d040f2a7cf85c2caf67c572711c 323 Gene3D G3DSA:2.40.30.10 2 104 7.7E-23 T 12-10-2018 ALFP_0075 4d7f7d040f2a7cf85c2caf67c572711c 323 Gene3D G3DSA:3.10.20.30 227 323 1.8E-24 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_0075 4d7f7d040f2a7cf85c2caf67c572711c 323 SUPERFAMILY SSF63380 1 103 4.66E-20 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_0075 4d7f7d040f2a7cf85c2caf67c572711c 323 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 272 280 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ALFP_3669 0b5394559d2e2baf4a55a5eb3b570548 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 12-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3669 0b5394559d2e2baf4a55a5eb3b570548 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.768 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3669 0b5394559d2e2baf4a55a5eb3b570548 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 1.6E-36 T 12-10-2018 IPR027486 Ribosomal protein S10 domain ALFP_3669 0b5394559d2e2baf4a55a5eb3b570548 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 4.6E-46 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3669 0b5394559d2e2baf4a55a5eb3b570548 103 Gene3D G3DSA:3.30.70.600 1 103 7.7E-38 T 12-10-2018 IPR036838 Ribosomal protein S10 domain superfamily ALFP_3669 0b5394559d2e2baf4a55a5eb3b570548 103 SMART SM01403 7 101 4.2E-57 T 12-10-2018 IPR027486 Ribosomal protein S10 domain ALFP_3669 0b5394559d2e2baf4a55a5eb3b570548 103 SUPERFAMILY SSF54999 5 101 2.49E-38 T 12-10-2018 IPR036838 Ribosomal protein S10 domain superfamily ALFP_3669 0b5394559d2e2baf4a55a5eb3b570548 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.1E-18 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3669 0b5394559d2e2baf4a55a5eb3b570548 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.1E-18 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3669 0b5394559d2e2baf4a55a5eb3b570548 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.1E-18 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_1547 d9ee1acb9fea74d38a41bca418130ff1 452 SUPERFAMILY SSF55874 293 452 4.06E-31 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_1547 d9ee1acb9fea74d38a41bca418130ff1 452 Gene3D G3DSA:3.30.565.10 301 452 1.9E-27 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_1547 d9ee1acb9fea74d38a41bca418130ff1 452 SUPERFAMILY SSF47384 221 303 2.94E-10 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_1547 d9ee1acb9fea74d38a41bca418130ff1 452 SMART SM00388 237 303 0.0019 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_1547 d9ee1acb9fea74d38a41bca418130ff1 452 SMART SM00304 184 236 4.8E-4 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 ALFP_1547 d9ee1acb9fea74d38a41bca418130ff1 452 SMART SM00387 348 452 7.6E-22 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_1547 d9ee1acb9fea74d38a41bca418130ff1 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 398 4.5E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1547 d9ee1acb9fea74d38a41bca418130ff1 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 433 4.5E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1547 d9ee1acb9fea74d38a41bca418130ff1 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 438 451 4.5E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_1547 d9ee1acb9fea74d38a41bca418130ff1 452 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 451 2.6E-16 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_1547 d9ee1acb9fea74d38a41bca418130ff1 452 Gene3D G3DSA:1.10.287.130 190 300 2.9E-14 T 12-10-2018 ALFP_0890 ba9c55077eb73a592db1ea91ef42b44d 308 Gene3D G3DSA:2.60.120.330 54 241 3.1E-43 T 12-10-2018 IPR027443 Isopenicillin N synthase-like ALFP_0890 ba9c55077eb73a592db1ea91ef42b44d 308 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 80 232 2.6E-46 T 12-10-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 ALFP_0890 ba9c55077eb73a592db1ea91ef42b44d 308 SUPERFAMILY SSF51197 102 232 2.22E-19 T 12-10-2018 ALFP_2496 3d6960e5712694086b08811afd526cfb 210 SMART SM00882 1 199 5.9E-72 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 ALFP_2496 3d6960e5712694086b08811afd526cfb 210 Gene3D G3DSA:3.40.1080.10 1 209 1.6E-96 T 12-10-2018 ALFP_2496 3d6960e5712694086b08811afd526cfb 210 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 37 45 - T 12-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 ALFP_2496 3d6960e5712694086b08811afd526cfb 210 SUPERFAMILY SSF100950 1 207 2.71E-69 T 12-10-2018 IPR037171 NagB/RpiA transferase-like ALFP_2496 3d6960e5712694086b08811afd526cfb 210 Pfam PF01144 Coenzyme A transferase 1 197 2.9E-36 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 ALFP_2496 3d6960e5712694086b08811afd526cfb 210 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 1 205 7.2E-93 T 12-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 ALFP_3531 ff67c54026b9eef23e0bbd72b5562592 297 SUPERFAMILY SSF53474 5 297 1.86E-84 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_3531 ff67c54026b9eef23e0bbd72b5562592 297 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 6 297 3.8E-129 T 12-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 ALFP_3531 ff67c54026b9eef23e0bbd72b5562592 297 Pfam PF00756 Putative esterase 58 291 6.1E-53 T 12-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 ALFP_3531 ff67c54026b9eef23e0bbd72b5562592 297 Gene3D G3DSA:3.40.50.1820 5 297 4.4E-87 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0974 027f4609a804bf033bc3a58af15e7321 271 SUPERFAMILY SSF56300 10 217 6.4E-21 T 12-10-2018 ALFP_0974 027f4609a804bf033bc3a58af15e7321 271 Gene3D G3DSA:3.60.21.10 10 226 1.2E-11 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like ALFP_0974 027f4609a804bf033bc3a58af15e7321 271 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 257 86.831 T 12-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 ALFP_0974 027f4609a804bf033bc3a58af15e7321 271 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 14 233 7.8E-67 T 12-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 ALFP_0974 027f4609a804bf033bc3a58af15e7321 271 Pfam PF00149 Calcineurin-like phosphoesterase 10 209 1.1E-7 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 ALFP_3501 37752bf632f6817cb3565560cf0c0ee7 655 Pfam PF02954 Bacterial regulatory protein, Fis family 609 638 4.6E-8 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_3501 37752bf632f6817cb3565560cf0c0ee7 655 Gene3D G3DSA:1.10.10.60 608 641 2.2E-11 T 12-10-2018 ALFP_3501 37752bf632f6817cb3565560cf0c0ee7 655 SUPERFAMILY SSF46689 609 642 1.1E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_3501 37752bf632f6817cb3565560cf0c0ee7 655 SMART SM00382 363 506 7.9E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3501 37752bf632f6817cb3565560cf0c0ee7 655 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 367 380 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 ALFP_3501 37752bf632f6817cb3565560cf0c0ee7 655 Gene3D G3DSA:1.10.8.60 514 589 1.2E-15 T 12-10-2018 ALFP_3501 37752bf632f6817cb3565560cf0c0ee7 655 Gene3D G3DSA:3.30.450.40 18 207 1.3E-45 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_3501 37752bf632f6817cb3565560cf0c0ee7 655 Gene3D G3DSA:3.40.50.300 334 513 4.5E-56 T 12-10-2018 ALFP_3501 37752bf632f6817cb3565560cf0c0ee7 655 Pfam PF01590 GAF domain 84 200 5.6E-8 T 12-10-2018 IPR003018 GAF domain GO:0005515 ALFP_3501 37752bf632f6817cb3565560cf0c0ee7 655 Pfam PF00158 Sigma-54 interaction domain 344 508 7.5E-59 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 ALFP_3501 37752bf632f6817cb3565560cf0c0ee7 655 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 429 444 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 ALFP_3501 37752bf632f6817cb3565560cf0c0ee7 655 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 552 561 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site ALFP_3501 37752bf632f6817cb3565560cf0c0ee7 655 SUPERFAMILY SSF55781 67 207 4.71E-7 T 12-10-2018 ALFP_3501 37752bf632f6817cb3565560cf0c0ee7 655 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 623 643 4.5E-5 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_3501 37752bf632f6817cb3565560cf0c0ee7 655 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 606 623 4.5E-5 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_3501 37752bf632f6817cb3565560cf0c0ee7 655 SUPERFAMILY SSF52540 343 584 3.42E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3238 4c8fc41e64d819a5c6807cc52a00c55f 308 SUPERFAMILY SSF75138 2 131 3.27E-28 T 12-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily ALFP_3238 4c8fc41e64d819a5c6807cc52a00c55f 308 Hamap MF_01249 HPr kinase/phosphorylase [hprK]. 1 305 37.091 T 12-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 ALFP_3238 4c8fc41e64d819a5c6807cc52a00c55f 308 Pfam PF02603 HPr Serine kinase N terminus 3 127 1.8E-22 T 12-10-2018 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 ALFP_3238 4c8fc41e64d819a5c6807cc52a00c55f 308 Gene3D G3DSA:3.40.1390.20 1 129 2.1E-22 T 12-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily ALFP_3238 4c8fc41e64d819a5c6807cc52a00c55f 308 Pfam PF07475 HPr Serine kinase C-terminal domain 130 297 8.9E-63 T 12-10-2018 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 ALFP_3238 4c8fc41e64d819a5c6807cc52a00c55f 308 SUPERFAMILY SSF53795 132 297 2.04E-34 T 12-10-2018 ALFP_3238 4c8fc41e64d819a5c6807cc52a00c55f 308 TIGRFAM TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase 3 299 3.6E-96 T 12-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 ALFP_3238 4c8fc41e64d819a5c6807cc52a00c55f 308 Gene3D G3DSA:3.40.50.300 130 308 7.6E-65 T 12-10-2018 ALFP_3417 cc87338c5827ee489ec45d86e974ec77 802 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 11 193 1.0E-45 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 ALFP_3417 cc87338c5827ee489ec45d86e974ec77 802 Gene3D G3DSA:1.10.1040.10 197 319 4.3E-17 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ALFP_3417 cc87338c5827ee489ec45d86e974ec77 802 SUPERFAMILY SSF51735 8 194 6.47E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3417 cc87338c5827ee489ec45d86e974ec77 802 SUPERFAMILY SSF48179 346 447 7.06E-14 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_3417 cc87338c5827ee489ec45d86e974ec77 802 Pfam PF00378 Enoyl-CoA hydratase/isomerase 503 634 3.6E-17 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 ALFP_3417 cc87338c5827ee489ec45d86e974ec77 802 SUPERFAMILY SSF52096 495 798 5.53E-41 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_3417 cc87338c5827ee489ec45d86e974ec77 802 SUPERFAMILY SSF48179 194 312 1.28E-17 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_3417 cc87338c5827ee489ec45d86e974ec77 802 Gene3D G3DSA:3.90.226.10 493 708 7.1E-32 T 12-10-2018 ALFP_3417 cc87338c5827ee489ec45d86e974ec77 802 Gene3D G3DSA:3.40.50.720 5 196 4.3E-57 T 12-10-2018 ALFP_3417 cc87338c5827ee489ec45d86e974ec77 802 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 196 295 8.1E-10 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 ALFP_1869 6771b2e834b02b7b972a20f7632a4d7d 222 SUPERFAMILY SSF55666 138 221 2.49E-23 T 12-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 ALFP_1869 6771b2e834b02b7b972a20f7632a4d7d 222 SUPERFAMILY SSF54211 3 165 4.5E-37 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_1869 6771b2e834b02b7b972a20f7632a4d7d 222 Pfam PF01138 3' exoribonuclease family, domain 1 2 120 1.8E-17 T 12-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 ALFP_1869 6771b2e834b02b7b972a20f7632a4d7d 222 ProSitePatterns PS01277 Ribonuclease PH signature. 100 112 - T 12-10-2018 IPR018336 Ribonuclease PH, conserved site ALFP_1869 6771b2e834b02b7b972a20f7632a4d7d 222 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 3 220 1.8E-109 T 12-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 ALFP_1869 6771b2e834b02b7b972a20f7632a4d7d 222 Pfam PF03725 3' exoribonuclease family, domain 2 144 207 3.1E-10 T 12-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 ALFP_1869 6771b2e834b02b7b972a20f7632a4d7d 222 Gene3D G3DSA:3.30.230.70 1 222 1.7E-55 T 12-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 ALFP_1869 6771b2e834b02b7b972a20f7632a4d7d 222 Hamap MF_00564 Ribonuclease PH [rph]. 1 221 42.6 T 12-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 ALFP_0583 2075f7b6efc1c9817cce21efc17e964b 195 PRINTS PR00605 Class IC cytochrome C signature 131 153 1.7E-5 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 ALFP_0583 2075f7b6efc1c9817cce21efc17e964b 195 PRINTS PR00605 Class IC cytochrome C signature 78 89 1.7E-5 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 ALFP_0583 2075f7b6efc1c9817cce21efc17e964b 195 Gene3D G3DSA:1.10.760.10 55 183 8.0E-39 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0583 2075f7b6efc1c9817cce21efc17e964b 195 SUPERFAMILY SSF46626 26 163 7.16E-24 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0583 2075f7b6efc1c9817cce21efc17e964b 195 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 70 153 6.9E-13 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3548 0c2622b4fbacc8cbd39c5a889cecc675 284 PRINTS PR01543 Arylamine N-acetyltransferase signature 74 96 4.8E-18 T 12-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 ALFP_3548 0c2622b4fbacc8cbd39c5a889cecc675 284 PRINTS PR01543 Arylamine N-acetyltransferase signature 26 49 4.8E-18 T 12-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 ALFP_3548 0c2622b4fbacc8cbd39c5a889cecc675 284 PRINTS PR01543 Arylamine N-acetyltransferase signature 50 73 4.8E-18 T 12-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 ALFP_3548 0c2622b4fbacc8cbd39c5a889cecc675 284 PRINTS PR01543 Arylamine N-acetyltransferase signature 107 132 4.8E-18 T 12-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 ALFP_3548 0c2622b4fbacc8cbd39c5a889cecc675 284 SUPERFAMILY SSF54001 6 266 2.35E-79 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily ALFP_3548 0c2622b4fbacc8cbd39c5a889cecc675 284 Gene3D G3DSA:2.40.128.150 90 186 6.9E-84 T 12-10-2018 ALFP_3548 0c2622b4fbacc8cbd39c5a889cecc675 284 Gene3D G3DSA:3.30.2140.10 10 255 6.9E-84 T 12-10-2018 ALFP_3548 0c2622b4fbacc8cbd39c5a889cecc675 284 Pfam PF00797 N-acetyltransferase 26 262 2.0E-74 T 12-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 ALFP_2376 b10701f7c169031b5394a1a2add3a521 220 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 2.7E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_2376 b10701f7c169031b5394a1a2add3a521 220 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 2.7E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_2376 b10701f7c169031b5394a1a2add3a521 220 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 2.7E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_2376 b10701f7c169031b5394a1a2add3a521 220 Pfam PF00072 Response regulator receiver domain 5 115 1.0E-19 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2376 b10701f7c169031b5394a1a2add3a521 220 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 5.4E-20 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_2376 b10701f7c169031b5394a1a2add3a521 220 SUPERFAMILY SSF52172 3 128 9.11E-23 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_2376 b10701f7c169031b5394a1a2add3a521 220 Gene3D G3DSA:1.10.10.10 147 216 7.1E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2376 b10701f7c169031b5394a1a2add3a521 220 SMART SM00421 147 204 2.3E-23 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_2376 b10701f7c169031b5394a1a2add3a521 220 SMART SM00448 2 116 3.7E-14 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2376 b10701f7c169031b5394a1a2add3a521 220 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_2376 b10701f7c169031b5394a1a2add3a521 220 SUPERFAMILY SSF46894 141 209 2.45E-20 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ALFP_2376 b10701f7c169031b5394a1a2add3a521 220 Gene3D G3DSA:3.40.50.2300 2 129 5.1E-23 T 12-10-2018 ALFP_0387 62eb52a3e16aa568bac73aee3288de99 265 SMART SM00862 169 242 1.7E-7 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_0387 62eb52a3e16aa568bac73aee3288de99 265 SUPERFAMILY SSF46894 163 243 1.13E-11 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ALFP_0387 62eb52a3e16aa568bac73aee3288de99 265 Pfam PF00486 Transcriptional regulatory protein, C terminal 170 242 9.5E-10 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_0387 62eb52a3e16aa568bac73aee3288de99 265 Gene3D G3DSA:1.10.10.10 152 243 4.4E-12 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1778 2094142fca8735a080609281478e7355 443 TIGRFAM TIGR01555 phge_rel_HI1409: phage-associated protein, HI1409 family 9 388 2.2E-79 T 12-10-2018 IPR006445 Phage-associated protein HI1409 ALFP_1778 2094142fca8735a080609281478e7355 443 Pfam PF06381 Protein of unknown function (DUF1073) 39 386 4.3E-103 T 12-10-2018 IPR024459 Protein of unknown function DUF1073 ALFP_0792 655faa2efe63d9b4373d2941148cbe1d 397 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 23 396 39.479 T 12-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_0792 655faa2efe63d9b4373d2941148cbe1d 397 Pfam PF01098 Cell cycle protein 30 389 4.3E-104 T 12-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_0792 655faa2efe63d9b4373d2941148cbe1d 397 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 26 387 3.6E-125 T 12-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_3206 a5917ed655199d8c51d136d3564de7cd 440 SUPERFAMILY SSF56954 5 427 1.57E-75 T 12-10-2018 ALFP_3206 a5917ed655199d8c51d136d3564de7cd 440 Pfam PF02321 Outer membrane efflux protein 23 209 4.5E-21 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_3206 a5917ed655199d8c51d136d3564de7cd 440 Pfam PF02321 Outer membrane efflux protein 233 422 3.8E-26 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_3206 a5917ed655199d8c51d136d3564de7cd 440 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 19 437 5.6E-90 T 12-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 ALFP_3206 a5917ed655199d8c51d136d3564de7cd 440 Gene3D G3DSA:1.20.1600.10 21 440 3.3E-100 T 12-10-2018 ALFP_2964 9c54a426c6fb6fd02b803ae265db455d 307 Gene3D G3DSA:3.40.190.150 10 297 1.8E-93 T 12-10-2018 ALFP_2964 9c54a426c6fb6fd02b803ae265db455d 307 SUPERFAMILY SSF53850 93 270 3.05E-13 T 12-10-2018 ALFP_2964 9c54a426c6fb6fd02b803ae265db455d 307 PIRSF PIRSF017082 1 306 1.0E-64 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_2964 9c54a426c6fb6fd02b803ae265db455d 307 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 30 303 4.1E-65 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_2964 9c54a426c6fb6fd02b803ae265db455d 307 Gene3D G3DSA:3.40.190.10 108 232 1.8E-93 T 12-10-2018 ALFP_3558 2c7bcf83c1cc27074392271df73a373b 207 Pfam PF02798 Glutathione S-transferase, N-terminal domain 9 76 1.1E-14 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 ALFP_3558 2c7bcf83c1cc27074392271df73a373b 207 Pfam PF00043 Glutathione S-transferase, C-terminal domain 112 192 5.1E-13 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal ALFP_3558 2c7bcf83c1cc27074392271df73a373b 207 Gene3D G3DSA:3.40.30.10 2 201 1.6E-73 T 12-10-2018 ALFP_3558 2c7bcf83c1cc27074392271df73a373b 207 Gene3D G3DSA:1.20.1050.10 83 191 1.6E-73 T 12-10-2018 ALFP_3558 2c7bcf83c1cc27074392271df73a373b 207 SUPERFAMILY SSF47616 84 201 1.36E-34 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily ALFP_3558 2c7bcf83c1cc27074392271df73a373b 207 SUPERFAMILY SSF52833 4 79 9.16E-23 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_0373 e8e627d60257326b54455d274e97908d 527 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 527 196.714 T 12-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 ALFP_0373 e8e627d60257326b54455d274e97908d 527 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 8 514 5.5E-193 T 12-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 ALFP_0373 e8e627d60257326b54455d274e97908d 527 Gene3D G3DSA:3.30.590.20 17 520 1.5E-187 T 12-10-2018 ALFP_0373 e8e627d60257326b54455d274e97908d 527 SUPERFAMILY SSF55931 7 512 1.31E-180 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 ALFP_0373 e8e627d60257326b54455d274e97908d 527 Pfam PF04262 Glutamate-cysteine ligase 10 374 1.0E-154 T 12-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 ALFP_3524 cbfba0290263ca2ead89099b18f77fd7 197 Gene3D G3DSA:3.40.30.10 49 191 3.3E-9 T 12-10-2018 ALFP_3524 cbfba0290263ca2ead89099b18f77fd7 197 SUPERFAMILY SSF52833 53 193 1.99E-13 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_1049 588e36fa4565f97357f0b17eebfe5e3f 380 Pfam PF03969 AFG1-like ATPase 20 372 3.1E-125 T 12-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 ALFP_1049 588e36fa4565f97357f0b17eebfe5e3f 380 SUPERFAMILY SSF52540 69 197 1.21E-15 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1049 588e36fa4565f97357f0b17eebfe5e3f 380 Gene3D G3DSA:3.40.50.300 14 207 6.1E-22 T 12-10-2018 ALFP_0786 4f90fee1cc44c998f1478ee9ddba2c38 356 Pfam PF01795 MraW methylase family 4 322 7.3E-101 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 ALFP_0786 4f90fee1cc44c998f1478ee9ddba2c38 356 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 37 322 1.7E-100 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 ALFP_0786 4f90fee1cc44c998f1478ee9ddba2c38 356 SUPERFAMILY SSF53335 38 322 8.35E-34 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_0786 4f90fee1cc44c998f1478ee9ddba2c38 356 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 5 323 35.604 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 ALFP_0786 4f90fee1cc44c998f1478ee9ddba2c38 356 Gene3D G3DSA:3.40.50.150 38 322 2.9E-95 T 12-10-2018 ALFP_0786 4f90fee1cc44c998f1478ee9ddba2c38 356 PIRSF PIRSF004486 1 324 1.5E-94 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 ALFP_0786 4f90fee1cc44c998f1478ee9ddba2c38 356 Gene3D G3DSA:1.10.150.170 127 229 2.9E-95 T 12-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 ALFP_0786 4f90fee1cc44c998f1478ee9ddba2c38 356 SUPERFAMILY SSF81799 129 228 1.7E-33 T 12-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 ALFP_0723 8b70bce42294c2633cf3352a2d72e32f 388 Gene3D G3DSA:3.90.1700.10 232 384 1.7E-17 T 12-10-2018 ALFP_0723 8b70bce42294c2633cf3352a2d72e32f 388 Gene3D G3DSA:3.90.1710.10 98 219 1.9E-40 T 12-10-2018 ALFP_0723 8b70bce42294c2633cf3352a2d72e32f 388 Pfam PF06545 Protein of unknown function (DUF1116) 77 282 1.8E-42 T 12-10-2018 IPR009499 Protein of unknown function DUF1116 ALFP_0723 8b70bce42294c2633cf3352a2d72e32f 388 Gene3D G3DSA:1.10.10.660 30 97 1.9E-40 T 12-10-2018 IPR024033 Uncharacterised domain superfamily, YlbE ALFP_3128 00f8ad593b1cbcf63f90bd969982bc2b 408 SUPERFAMILY SSF56266 16 405 6.67E-139 T 12-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 ALFP_3128 00f8ad593b1cbcf63f90bd969982bc2b 408 Pfam PF01960 ArgJ family 22 408 1.7E-142 T 12-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 ALFP_3128 00f8ad593b1cbcf63f90bd969982bc2b 408 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 12 408 1.1E-124 T 12-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 ALFP_3128 00f8ad593b1cbcf63f90bd969982bc2b 408 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 24 406 3.0E-164 T 12-10-2018 ALFP_3128 00f8ad593b1cbcf63f90bd969982bc2b 408 Gene3D G3DSA:3.60.70.12 10 278 4.2E-88 T 12-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 ALFP_3128 00f8ad593b1cbcf63f90bd969982bc2b 408 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 408 155.74 T 12-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 ALFP_3128 00f8ad593b1cbcf63f90bd969982bc2b 408 Gene3D G3DSA:3.10.20.340 279 408 9.1E-42 T 12-10-2018 ALFP_0791 e9db83b04723e31a7b6d82a9faef316b 509 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 132 155 - T 12-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 ALFP_0791 e9db83b04723e31a7b6d82a9faef316b 509 SUPERFAMILY SSF53623 129 360 2.49E-46 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 ALFP_0791 e9db83b04723e31a7b6d82a9faef316b 509 Pfam PF02875 Mur ligase family, glutamate ligase domain 364 434 4.8E-8 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 ALFP_0791 e9db83b04723e31a7b6d82a9faef316b 509 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 16 499 2.1E-114 T 12-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 ALFP_0791 e9db83b04723e31a7b6d82a9faef316b 509 Gene3D G3DSA:3.40.50.720 11 109 1.5E-16 T 12-10-2018 ALFP_0791 e9db83b04723e31a7b6d82a9faef316b 509 SUPERFAMILY SSF53244 362 501 1.83E-42 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 ALFP_0791 e9db83b04723e31a7b6d82a9faef316b 509 SUPERFAMILY SSF51984 16 110 1.31E-9 T 12-10-2018 ALFP_0791 e9db83b04723e31a7b6d82a9faef316b 509 Gene3D G3DSA:3.90.190.20 368 505 7.8E-43 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 ALFP_0791 e9db83b04723e31a7b6d82a9faef316b 509 Gene3D G3DSA:3.40.1190.10 110 362 2.5E-52 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 ALFP_0791 e9db83b04723e31a7b6d82a9faef316b 509 Pfam PF08245 Mur ligase middle domain 134 342 1.0E-25 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 ALFP_0791 e9db83b04723e31a7b6d82a9faef316b 509 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 13 501 31.631 T 12-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 ALFP_2470 73b62837a64c9ba6b6a5b80ffbf094ac 347 Gene3D G3DSA:3.10.105.10 33 132 1.7E-7 T 12-10-2018 ALFP_2470 73b62837a64c9ba6b6a5b80ffbf094ac 347 Gene3D G3DSA:3.10.105.10 270 346 3.1E-7 T 12-10-2018 ALFP_2470 73b62837a64c9ba6b6a5b80ffbf094ac 347 Gene3D G3DSA:3.40.190.100 133 261 1.4E-35 T 12-10-2018 ALFP_2470 73b62837a64c9ba6b6a5b80ffbf094ac 347 SUPERFAMILY SSF53850 42 341 2.75E-81 T 12-10-2018 ALFP_2470 73b62837a64c9ba6b6a5b80ffbf094ac 347 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 49 326 7.9E-64 T 12-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 ALFP_2930 d6dfe74868b3edacd06ad038c1b3f79e 324 Gene3D G3DSA:3.40.190.150 28 314 2.8E-92 T 12-10-2018 ALFP_2930 d6dfe74868b3edacd06ad038c1b3f79e 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 320 5.0E-66 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_2930 d6dfe74868b3edacd06ad038c1b3f79e 324 Gene3D G3DSA:3.40.190.10 126 249 2.8E-92 T 12-10-2018 ALFP_2930 d6dfe74868b3edacd06ad038c1b3f79e 324 PIRSF PIRSF017082 1 324 4.6E-65 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_2930 d6dfe74868b3edacd06ad038c1b3f79e 324 SUPERFAMILY SSF53850 116 285 2.9E-10 T 12-10-2018 ALFP_0462 471740da5f1bfcc8d247ee987683db2d 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 246 8.9E-57 T 12-10-2018 ALFP_0462 471740da5f1bfcc8d247ee987683db2d 250 SUPERFAMILY SSF51735 11 247 3.22E-75 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0462 471740da5f1bfcc8d247ee987683db2d 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 3.8E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0462 471740da5f1bfcc8d247ee987683db2d 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 3.8E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0462 471740da5f1bfcc8d247ee987683db2d 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 3.8E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0462 471740da5f1bfcc8d247ee987683db2d 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.8E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0462 471740da5f1bfcc8d247ee987683db2d 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 3.8E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0462 471740da5f1bfcc8d247ee987683db2d 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 3.8E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0462 471740da5f1bfcc8d247ee987683db2d 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 8.7E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0462 471740da5f1bfcc8d247ee987683db2d 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 8.7E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0462 471740da5f1bfcc8d247ee987683db2d 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 8.7E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0462 471740da5f1bfcc8d247ee987683db2d 250 Gene3D G3DSA:3.40.50.720 5 249 1.9E-76 T 12-10-2018 ALFP_0462 471740da5f1bfcc8d247ee987683db2d 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 187 0.0021 T 12-10-2018 ALFP_1639 4b71d8b22ca9342420959c19ea36e93e 102 Pfam PF00959 Phage lysozyme 22 102 7.9E-8 T 12-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 ALFP_1639 4b71d8b22ca9342420959c19ea36e93e 102 Gene3D G3DSA:1.10.530.40 1 102 7.0E-26 T 12-10-2018 ALFP_1639 4b71d8b22ca9342420959c19ea36e93e 102 SUPERFAMILY SSF53955 2 102 3.12E-20 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily ALFP_1277 c5ae75cb27fbb787f942dbc8a9847625 302 Gene3D G3DSA:3.40.190.170 1 299 4.8E-59 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_1277 c5ae75cb27fbb787f942dbc8a9847625 302 SUPERFAMILY SSF53850 96 230 3.02E-6 T 12-10-2018 ALFP_1277 c5ae75cb27fbb787f942dbc8a9847625 302 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 4 273 7.4E-42 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_1282 f41ec216f15972339a5fb77658ee4c58 440 PIRSF PIRSF006066 5 440 1.6E-72 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_1282 f41ec216f15972339a5fb77658ee4c58 440 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 434 3.9E-90 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_1282 f41ec216f15972339a5fb77658ee4c58 440 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 13 428 2.2E-82 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_3358 e522596accf0c197f574d965d6e38c75 357 SUPERFAMILY SSF56281 26 307 2.94E-40 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_3358 e522596accf0c197f574d965d6e38c75 357 Gene3D G3DSA:3.60.15.10 27 322 7.1E-50 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_3358 e522596accf0c197f574d965d6e38c75 357 Pfam PF12706 Beta-lactamase superfamily domain 81 274 2.3E-12 T 12-10-2018 IPR001279 Metallo-beta-lactamase ALFP_2587 9bcaa3b88a0f6b86b4eebbf2b3a196ba 417 SUPERFAMILY SSF56762 16 417 1.15E-135 T 12-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2587 9bcaa3b88a0f6b86b4eebbf2b3a196ba 417 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 120 417 8.2E-122 T 12-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2587 9bcaa3b88a0f6b86b4eebbf2b3a196ba 417 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 6 417 2.0E-186 T 12-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2587 9bcaa3b88a0f6b86b4eebbf2b3a196ba 417 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 43 54 - T 12-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2587 9bcaa3b88a0f6b86b4eebbf2b3a196ba 417 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 1 417 49.785 T 12-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2587 9bcaa3b88a0f6b86b4eebbf2b3a196ba 417 Gene3D G3DSA:1.10.645.20 4 417 3.1E-171 T 12-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2133 b3f1f5712f21e203ed76ece11807f05a 454 Pfam PF07690 Major Facilitator Superfamily 77 388 1.3E-27 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_2133 b3f1f5712f21e203ed76ece11807f05a 454 SUPERFAMILY SSF103473 25 448 4.05E-66 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2133 b3f1f5712f21e203ed76ece11807f05a 454 Gene3D G3DSA:1.20.1250.20 27 454 8.6E-66 T 12-10-2018 ALFP_2681 d465443ebf5d30294ed50f18ffd743ff 203 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 158 199 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ALFP_2681 d465443ebf5d30294ed50f18ffd743ff 203 SMART SM00342 121 203 1.2E-29 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_2681 d465443ebf5d30294ed50f18ffd743ff 203 Pfam PF12833 Helix-turn-helix domain 127 202 4.1E-21 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_2681 d465443ebf5d30294ed50f18ffd743ff 203 SUPERFAMILY SSF46689 157 202 9.41E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2681 d465443ebf5d30294ed50f18ffd743ff 203 SUPERFAMILY SSF46689 105 155 8.36E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2681 d465443ebf5d30294ed50f18ffd743ff 203 Gene3D G3DSA:1.10.10.60 100 203 1.0E-23 T 12-10-2018 ALFP_3118 8ce284942415036385d7eb2e3b9b25a7 171 Gene3D G3DSA:3.40.1740.10 3 171 1.7E-49 T 12-10-2018 ALFP_3118 8ce284942415036385d7eb2e3b9b25a7 171 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 1 171 25.433 T 12-10-2018 IPR003774 Protein of unknown function UPF0301 ALFP_3118 8ce284942415036385d7eb2e3b9b25a7 171 SUPERFAMILY SSF143456 6 171 1.44E-41 T 12-10-2018 ALFP_3118 8ce284942415036385d7eb2e3b9b25a7 171 Pfam PF02622 Uncharacterized ACR, COG1678 7 158 4.8E-35 T 12-10-2018 IPR003774 Protein of unknown function UPF0301 ALFP_1822 9a61ce8dfaa72301d854ea0c956ecf80 203 Gene3D G3DSA:2.60.40.1240 67 190 2.3E-15 T 12-10-2018 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily ALFP_1105 910843d90782649d9605d5a6bf077830 323 PIRSF PIRSF026166 1 322 5.7E-114 T 12-10-2018 IPR016833 Putative sodium bile acid cotransporter ALFP_1105 910843d90782649d9605d5a6bf077830 323 Gene3D G3DSA:1.20.1530.20 3 320 1.4E-31 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily ALFP_1105 910843d90782649d9605d5a6bf077830 323 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 8 318 8.2E-88 T 12-10-2018 IPR016833 Putative sodium bile acid cotransporter ALFP_3691 3f3feeb2d74b18f530b03f8044d3640b 271 Gene3D G3DSA:3.40.50.300 4 271 8.2E-78 T 12-10-2018 ALFP_3691 3f3feeb2d74b18f530b03f8044d3640b 271 Pfam PF13614 AAA domain 13 186 8.3E-65 T 12-10-2018 IPR025669 AAA domain ALFP_3691 3f3feeb2d74b18f530b03f8044d3640b 271 SUPERFAMILY SSF52540 11 264 1.1E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2857 b9f7babbcf637e6b21d0430c9032ec68 328 PIRSF PIRSF025648 2 328 6.8E-141 T 12-10-2018 IPR010190 Diaminopimelate dehydrogenase, Ddh GO:0009089|GO:0047850 KEGG: 00300+1.4.1.16|MetaCyc: PWY-2942 ALFP_2857 b9f7babbcf637e6b21d0430c9032ec68 328 Gene3D G3DSA:3.30.360.10 133 272 4.1E-128 T 12-10-2018 ALFP_2857 b9f7babbcf637e6b21d0430c9032ec68 328 TIGRFAM TIGR01921 DAP-DH: diaminopimelate dehydrogenase 3 328 1.2E-140 T 12-10-2018 IPR010190 Diaminopimelate dehydrogenase, Ddh GO:0009089|GO:0047850 KEGG: 00300+1.4.1.16|MetaCyc: PWY-2942 ALFP_2857 b9f7babbcf637e6b21d0430c9032ec68 328 SUPERFAMILY SSF55347 125 275 3.33E-57 T 12-10-2018 ALFP_2857 b9f7babbcf637e6b21d0430c9032ec68 328 SUPERFAMILY SSF51735 4 150 1.89E-27 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2857 b9f7babbcf637e6b21d0430c9032ec68 328 Gene3D G3DSA:3.40.50.720 5 312 4.1E-128 T 12-10-2018 ALFP_2857 b9f7babbcf637e6b21d0430c9032ec68 328 Pfam PF16654 Diaminopimelic acid dehydrogenase C-terminal domain 124 277 9.0E-75 T 12-10-2018 IPR032094 Meso-diaminopimelate D-dehydrogenase, C-terminal KEGG: 00300+1.4.1.16|MetaCyc: PWY-2942 ALFP_2734 76dd138a2bc87da255e38de46cd05044 350 Gene3D G3DSA:2.40.30.10 3 106 6.6E-12 T 12-10-2018 ALFP_2734 76dd138a2bc87da255e38de46cd05044 350 Gene3D G3DSA:3.40.50.80 112 246 5.5E-16 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_2734 76dd138a2bc87da255e38de46cd05044 350 SUPERFAMILY SSF54292 234 346 8.65E-22 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_2734 76dd138a2bc87da255e38de46cd05044 350 SUPERFAMILY SSF52343 112 245 2.62E-16 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_2734 76dd138a2bc87da255e38de46cd05044 350 SUPERFAMILY SSF63380 3 101 1.9E-12 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_2734 76dd138a2bc87da255e38de46cd05044 350 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 295 303 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ALFP_2734 76dd138a2bc87da255e38de46cd05044 350 Pfam PF00175 Oxidoreductase NAD-binding domain 118 225 2.9E-5 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ALFP_2734 76dd138a2bc87da255e38de46cd05044 350 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 265 337 9.9E-15 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_2734 76dd138a2bc87da255e38de46cd05044 350 Gene3D G3DSA:3.10.20.30 254 348 1.8E-20 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_1051 a9522a2d3c5fa481e6a28592085ad38d 218 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 119 147 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 ALFP_1051 a9522a2d3c5fa481e6a28592085ad38d 218 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 145 6.9E-10 T 12-10-2018 IPR001451 Hexapeptide repeat ALFP_1051 a9522a2d3c5fa481e6a28592085ad38d 218 SUPERFAMILY SSF51161 56 201 1.16E-41 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily ALFP_1051 a9522a2d3c5fa481e6a28592085ad38d 218 Gene3D G3DSA:2.160.10.10 2 211 1.2E-53 T 12-10-2018 ALFP_3105 f902c042cd671d9ebbb88affb634e2e9 150 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 106 123 - T 12-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 ALFP_3105 f902c042cd671d9ebbb88affb634e2e9 150 Gene3D G3DSA:2.40.50.100 71 149 4.6E-33 T 12-10-2018 ALFP_3105 f902c042cd671d9ebbb88affb634e2e9 150 Pfam PF00364 Biotin-requiring enzyme 76 149 5.1E-25 T 12-10-2018 IPR000089 Biotin/lipoyl attachment ALFP_3105 f902c042cd671d9ebbb88affb634e2e9 150 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 149 5.7E-55 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 ALFP_3105 f902c042cd671d9ebbb88affb634e2e9 150 SUPERFAMILY SSF51230 75 149 1.57E-25 T 12-10-2018 IPR011053 Single hybrid motif ALFP_3105 f902c042cd671d9ebbb88affb634e2e9 150 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 96 110 1.0E-18 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 ALFP_3105 f902c042cd671d9ebbb88affb634e2e9 150 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 79 92 1.0E-18 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 ALFP_3105 f902c042cd671d9ebbb88affb634e2e9 150 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 111 124 1.0E-18 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 ALFP_1592 d7732a858189dc9f75832ec17724ecf9 124 Pfam PF02635 DsrE/DsrF-like family 21 114 6.7E-8 T 12-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein ALFP_1592 d7732a858189dc9f75832ec17724ecf9 124 Gene3D G3DSA:3.40.1260.10 2 122 1.6E-20 T 12-10-2018 IPR027396 DsrEFH-like ALFP_1592 d7732a858189dc9f75832ec17724ecf9 124 SUPERFAMILY SSF75169 11 117 3.24E-15 T 12-10-2018 IPR027396 DsrEFH-like ALFP_2008 79667f9e7d5cda60ddfc7d0d10631dc7 261 SUPERFAMILY SSF51621 7 252 9.42E-56 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 ALFP_2008 79667f9e7d5cda60ddfc7d0d10631dc7 261 Pfam PF13714 Phosphoenolpyruvate phosphomutase 12 244 3.9E-63 T 12-10-2018 ALFP_2008 79667f9e7d5cda60ddfc7d0d10631dc7 261 Gene3D G3DSA:3.20.20.60 1 244 3.4E-58 T 12-10-2018 ALFP_1447 a8693be441d61c5737b8e3e79ad5b126 380 SUPERFAMILY SSF111369 181 294 6.15E-15 T 12-10-2018 ALFP_1447 a8693be441d61c5737b8e3e79ad5b126 380 Gene3D G3DSA:2.40.50.100 60 91 1.7E-8 T 12-10-2018 ALFP_1447 a8693be441d61c5737b8e3e79ad5b126 380 SUPERFAMILY SSF111369 59 138 9.81E-8 T 12-10-2018 ALFP_1447 a8693be441d61c5737b8e3e79ad5b126 380 Pfam PF00529 HlyD membrane-fusion protein of T1SS 303 353 1.4E-9 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 ALFP_1447 a8693be441d61c5737b8e3e79ad5b126 380 Gene3D G3DSA:1.10.287.470 119 224 6.7E-12 T 12-10-2018 ALFP_1447 a8693be441d61c5737b8e3e79ad5b126 380 Gene3D G3DSA:2.40.30.170 242 356 2.7E-36 T 12-10-2018 ALFP_1447 a8693be441d61c5737b8e3e79ad5b126 380 Gene3D G3DSA:1.10.287.470 92 115 1.7E-8 T 12-10-2018 ALFP_1447 a8693be441d61c5737b8e3e79ad5b126 380 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 302 1.4E-15 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain ALFP_2238 b0543d46c0a1842ab14675034918c25a 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 25 84 1.9E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2238 b0543d46c0a1842ab14675034918c25a 242 Pfam PF07729 FCD domain 94 217 2.8E-18 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_2238 b0543d46c0a1842ab14675034918c25a 242 Gene3D G3DSA:1.10.10.10 14 84 2.8E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2238 b0543d46c0a1842ab14675034918c25a 242 SMART SM00345 26 84 1.9E-11 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_2238 b0543d46c0a1842ab14675034918c25a 242 SMART SM00895 94 218 1.1E-15 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_2238 b0543d46c0a1842ab14675034918c25a 242 SUPERFAMILY SSF48008 91 225 2.07E-25 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_2238 b0543d46c0a1842ab14675034918c25a 242 SUPERFAMILY SSF46785 25 88 1.43E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2238 b0543d46c0a1842ab14675034918c25a 242 Gene3D G3DSA:1.20.120.530 87 228 7.3E-26 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_2037 e296f24c0b569860e36de8a537248659 274 SUPERFAMILY SSF53335 69 271 8.59E-40 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_2037 e296f24c0b569860e36de8a537248659 274 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 64 274 35.626 T 12-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 ALFP_2037 e296f24c0b569860e36de8a537248659 274 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 71 269 3.9E-58 T 12-10-2018 ALFP_2037 e296f24c0b569860e36de8a537248659 274 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 66 272 1.7E-59 T 12-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 ALFP_2037 e296f24c0b569860e36de8a537248659 274 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 195 210 - T 12-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 ALFP_2037 e296f24c0b569860e36de8a537248659 274 Gene3D G3DSA:3.40.50.150 56 273 1.5E-70 T 12-10-2018 ALFP_0632 cf83c4727426c3aaa9baef8dfe4c1476 213 Gene3D G3DSA:3.40.30.10 13 206 2.8E-42 T 12-10-2018 ALFP_0632 cf83c4727426c3aaa9baef8dfe4c1476 213 SUPERFAMILY SSF52833 10 212 2.11E-31 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_0632 cf83c4727426c3aaa9baef8dfe4c1476 213 Pfam PF01323 DSBA-like thioredoxin domain 12 190 5.0E-13 T 12-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 ALFP_0632 cf83c4727426c3aaa9baef8dfe4c1476 213 Gene3D G3DSA:1.10.472.60 49 177 2.8E-42 T 12-10-2018 ALFP_2016 d730357f58693663464d8898fe9c96ba 67 SMART SM01409 8 59 1.1E-13 T 12-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 ALFP_2016 d730357f58693663464d8898fe9c96ba 67 Gene3D G3DSA:3.90.940.10 1 67 7.0E-21 T 12-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 ALFP_2016 d730357f58693663464d8898fe9c96ba 67 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 55 1.6E-16 T 12-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_2016 d730357f58693663464d8898fe9c96ba 67 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 60 16.525 T 12-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_2016 d730357f58693663464d8898fe9c96ba 67 SUPERFAMILY SSF63562 1 62 1.06E-19 T 12-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 ALFP_2016 d730357f58693663464d8898fe9c96ba 67 Pfam PF01192 RNA polymerase Rpb6 8 55 2.4E-14 T 12-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 ALFP_0279 af8235c8d30d6d60bf84132c8b9debd2 397 SUPERFAMILY SSF51905 3 390 7.03E-45 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0279 af8235c8d30d6d60bf84132c8b9debd2 397 Pfam PF01494 FAD binding domain 144 339 9.2E-15 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 ALFP_0279 af8235c8d30d6d60bf84132c8b9debd2 397 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 294 307 - T 12-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 ALFP_0279 af8235c8d30d6d60bf84132c8b9debd2 397 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 389 1.0E-95 T 12-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 ALFP_0279 af8235c8d30d6d60bf84132c8b9debd2 397 Gene3D G3DSA:3.50.50.60 6 337 2.4E-75 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0279 af8235c8d30d6d60bf84132c8b9debd2 397 Gene3D G3DSA:3.30.9.50 80 270 2.4E-75 T 12-10-2018 ALFP_0279 af8235c8d30d6d60bf84132c8b9debd2 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 311 8.7E-16 T 12-10-2018 ALFP_0279 af8235c8d30d6d60bf84132c8b9debd2 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 8.7E-16 T 12-10-2018 ALFP_0279 af8235c8d30d6d60bf84132c8b9debd2 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 149 164 8.7E-16 T 12-10-2018 ALFP_0279 af8235c8d30d6d60bf84132c8b9debd2 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 280 295 8.7E-16 T 12-10-2018 ALFP_3584 56cfd143df955d14d470a76893692d20 411 PRINTS PR01035 Tetracycline resistance protein signature 282 303 2.2E-6 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 ALFP_3584 56cfd143df955d14d470a76893692d20 411 PRINTS PR01035 Tetracycline resistance protein signature 54 73 2.2E-6 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 ALFP_3584 56cfd143df955d14d470a76893692d20 411 PRINTS PR01035 Tetracycline resistance protein signature 139 161 2.2E-6 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 ALFP_3584 56cfd143df955d14d470a76893692d20 411 PRINTS PR01035 Tetracycline resistance protein signature 24 40 2.2E-6 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 ALFP_3584 56cfd143df955d14d470a76893692d20 411 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 14 387 6.4E-83 T 12-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 ALFP_3584 56cfd143df955d14d470a76893692d20 411 SUPERFAMILY SSF103473 6 398 2.75E-56 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_3584 56cfd143df955d14d470a76893692d20 411 Gene3D G3DSA:1.20.1720.10 14 393 3.5E-91 T 12-10-2018 ALFP_3584 56cfd143df955d14d470a76893692d20 411 Pfam PF07690 Major Facilitator Superfamily 18 361 1.1E-38 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_2551 5d64eacb51caac2d9fc7b99884f4b761 212 Gene3D G3DSA:1.10.1670.10 12 203 1.2E-74 T 12-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 ALFP_2551 5d64eacb51caac2d9fc7b99884f4b761 212 Pfam PF00633 Helix-hairpin-helix motif 100 127 9.3E-8 T 12-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 ALFP_2551 5d64eacb51caac2d9fc7b99884f4b761 212 SMART SM00525 186 206 1.6E-4 T 12-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 ALFP_2551 5d64eacb51caac2d9fc7b99884f4b761 212 PIRSF PIRSF001435 1 211 4.3E-50 T 12-10-2018 ALFP_2551 5d64eacb51caac2d9fc7b99884f4b761 212 SUPERFAMILY SSF48150 4 206 1.4E-70 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 ALFP_2551 5d64eacb51caac2d9fc7b99884f4b761 212 Gene3D G3DSA:1.10.340.30 21 132 1.2E-74 T 12-10-2018 ALFP_2551 5d64eacb51caac2d9fc7b99884f4b761 212 TIGRFAM TIGR01083 nth: endonuclease III 5 194 1.7E-83 T 12-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 ALFP_2551 5d64eacb51caac2d9fc7b99884f4b761 212 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 12-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 ALFP_2551 5d64eacb51caac2d9fc7b99884f4b761 212 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 3.2E-21 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 ALFP_2551 5d64eacb51caac2d9fc7b99884f4b761 212 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 12-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 ALFP_2551 5d64eacb51caac2d9fc7b99884f4b761 212 Hamap MF_00942 Endonuclease III [nth]. 1 209 36.617 T 12-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 ALFP_2551 5d64eacb51caac2d9fc7b99884f4b761 212 SMART SM00478 38 185 2.4E-57 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 ALFP_2551 5d64eacb51caac2d9fc7b99884f4b761 212 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 9.2E-5 T 12-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 ALFP_1707 7715f700c5bd768f468176ce62956e1a 62 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 61 14.046 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 ALFP_1707 7715f700c5bd768f468176ce62956e1a 62 PRINTS PR00064 Ribosomal protein L35 signature 18 32 6.6E-9 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 ALFP_1707 7715f700c5bd768f468176ce62956e1a 62 PRINTS PR00064 Ribosomal protein L35 signature 33 51 6.6E-9 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 ALFP_1707 7715f700c5bd768f468176ce62956e1a 62 Pfam PF01632 Ribosomal protein L35 1 59 3.2E-23 T 12-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1707 7715f700c5bd768f468176ce62956e1a 62 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 1 60 1.6E-24 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 ALFP_1707 7715f700c5bd768f468176ce62956e1a 62 ProSitePatterns PS00936 Ribosomal protein L35 signature. 2 28 - T 12-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_1707 7715f700c5bd768f468176ce62956e1a 62 Gene3D G3DSA:2.40.50.530 1 61 1.9E-19 T 12-10-2018 ALFP_1707 7715f700c5bd768f468176ce62956e1a 62 SUPERFAMILY SSF143034 1 61 7.85E-22 T 12-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1119 b094eaad079646f73dfa32e3c9f21752 461 PRINTS PR01874 DNA repair protein radA signature 178 202 5.9E-94 T 12-10-2018 ALFP_1119 b094eaad079646f73dfa32e3c9f21752 461 PRINTS PR01874 DNA repair protein radA signature 128 145 5.9E-94 T 12-10-2018 ALFP_1119 b094eaad079646f73dfa32e3c9f21752 461 PRINTS PR01874 DNA repair protein radA signature 326 349 5.9E-94 T 12-10-2018 ALFP_1119 b094eaad079646f73dfa32e3c9f21752 461 PRINTS PR01874 DNA repair protein radA signature 87 115 5.9E-94 T 12-10-2018 ALFP_1119 b094eaad079646f73dfa32e3c9f21752 461 PRINTS PR01874 DNA repair protein radA signature 217 245 5.9E-94 T 12-10-2018 ALFP_1119 b094eaad079646f73dfa32e3c9f21752 461 PRINTS PR01874 DNA repair protein radA signature 252 278 5.9E-94 T 12-10-2018 ALFP_1119 b094eaad079646f73dfa32e3c9f21752 461 PRINTS PR01874 DNA repair protein radA signature 17 41 5.9E-94 T 12-10-2018 ALFP_1119 b094eaad079646f73dfa32e3c9f21752 461 Gene3D G3DSA:3.40.50.300 70 285 1.5E-44 T 12-10-2018 ALFP_1119 b094eaad079646f73dfa32e3c9f21752 461 Hamap MF_01498 DNA repair protein RadA [radA]. 28 459 44.019 T 12-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 ALFP_1119 b094eaad079646f73dfa32e3c9f21752 461 SMART SM00382 95 248 2.1E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1119 b094eaad079646f73dfa32e3c9f21752 461 TIGRFAM TIGR00416 sms: DNA repair protein RadA 10 455 1.1E-192 T 12-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 ALFP_1119 b094eaad079646f73dfa32e3c9f21752 461 SUPERFAMILY SSF52540 73 293 1.8E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1119 b094eaad079646f73dfa32e3c9f21752 461 Pfam PF13481 AAA domain 89 226 9.2E-17 T 12-10-2018 ALFP_1119 b094eaad079646f73dfa32e3c9f21752 461 Gene3D G3DSA:3.30.230.10 302 461 2.4E-17 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ALFP_1119 b094eaad079646f73dfa32e3c9f21752 461 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 365 455 9.9E-5 T 12-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 ALFP_1119 b094eaad079646f73dfa32e3c9f21752 461 SUPERFAMILY SSF54211 259 460 5.31E-41 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_0796 6af51b283cdf4f03f9d3a6d451ac2754 263 Pfam PF03799 Cell division protein FtsQ 114 245 5.6E-23 T 12-10-2018 IPR005548 Cell division protein FtsQ/DivIB ALFP_0796 6af51b283cdf4f03f9d3a6d451ac2754 263 Gene3D G3DSA:3.40.50.11690 111 259 6.5E-38 T 12-10-2018 ALFP_0796 6af51b283cdf4f03f9d3a6d451ac2754 263 Pfam PF08478 POTRA domain, FtsQ-type 53 110 5.2E-13 T 12-10-2018 IPR013685 POTRA domain, FtsQ-type ALFP_0796 6af51b283cdf4f03f9d3a6d451ac2754 263 Gene3D G3DSA:3.10.20.310 37 110 1.8E-15 T 12-10-2018 ALFP_0796 6af51b283cdf4f03f9d3a6d451ac2754 263 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 7 253 22.053 T 12-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 ALFP_3300 0098291f021aa9e69fdb080b017d9a2c 161 Pfam PF03899 ATP synthase I chain 49 145 2.1E-6 T 12-10-2018 IPR005598 ATP synthase protein I ALFP_1542 1dd2b994f98ebe7d1f94d895fd145582 464 Pfam PF01979 Amidohydrolase family 75 442 1.1E-22 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 ALFP_1542 1dd2b994f98ebe7d1f94d895fd145582 464 ProSitePatterns PS00483 Dihydroorotase signature 2. 325 336 - T 12-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_1542 1dd2b994f98ebe7d1f94d895fd145582 464 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 42 446 4.8E-89 T 12-10-2018 ALFP_1542 1dd2b994f98ebe7d1f94d895fd145582 464 SUPERFAMILY SSF51556 78 390 4.64E-94 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_1542 1dd2b994f98ebe7d1f94d895fd145582 464 SUPERFAMILY SSF51338 25 453 9.51E-28 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_1542 1dd2b994f98ebe7d1f94d895fd145582 464 Gene3D G3DSA:3.20.20.140 78 386 1.4E-120 T 12-10-2018 ALFP_1542 1dd2b994f98ebe7d1f94d895fd145582 464 Gene3D G3DSA:2.30.40.10 30 451 1.4E-120 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_1852 939121a85ebde40e4346b6a1dd9bdf5d 95 SMART SM00834 1 43 6.7E-7 T 12-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain ALFP_1852 939121a85ebde40e4346b6a1dd9bdf5d 95 Pfam PF09723 Zinc ribbon domain 1 35 4.0E-9 T 12-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain ALFP_1852 939121a85ebde40e4346b6a1dd9bdf5d 95 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 49 1.1E-12 T 12-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain ALFP_1470 d547d5c4f936d0842e8227045c29d601 405 Gene3D G3DSA:3.30.1540.10 229 327 3.3E-128 T 12-10-2018 ALFP_1470 d547d5c4f936d0842e8227045c29d601 405 SUPERFAMILY SSF89796 6 398 2.35E-128 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_1470 d547d5c4f936d0842e8227045c29d601 405 Pfam PF02515 CoA-transferase family III 9 375 3.2E-123 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 ALFP_1470 d547d5c4f936d0842e8227045c29d601 405 Gene3D G3DSA:3.40.50.10540 6 389 3.3E-128 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_2941 ed903cd052a4f0092451060c715fe287 259 Pfam PF00005 ABC transporter 23 162 3.6E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2941 ed903cd052a4f0092451060c715fe287 259 SMART SM00382 32 222 7.1E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2941 ed903cd052a4f0092451060c715fe287 259 SUPERFAMILY SSF52540 8 233 5.61E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2941 ed903cd052a4f0092451060c715fe287 259 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_2941 ed903cd052a4f0092451060c715fe287 259 Gene3D G3DSA:3.40.50.300 5 230 1.6E-58 T 12-10-2018 ALFP_1033 8bbd52bb11af61abe8934ddd16479715 271 SUPERFAMILY SSF47413 34 84 3.07E-5 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_1033 8bbd52bb11af61abe8934ddd16479715 271 SMART SM00530 14 86 5.8E-7 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_1033 8bbd52bb11af61abe8934ddd16479715 271 Pfam PF13560 Helix-turn-helix domain 10 89 5.0E-17 T 12-10-2018 ALFP_1033 8bbd52bb11af61abe8934ddd16479715 271 Gene3D G3DSA:3.30.450.180 112 264 5.0E-7 T 12-10-2018 ALFP_1033 8bbd52bb11af61abe8934ddd16479715 271 Gene3D G3DSA:1.10.260.40 18 88 2.9E-5 T 12-10-2018 ALFP_1838 22a5e4d556ecb2675f2df3ac86b025bb 334 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 86 308 5.7E-58 T 12-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 ALFP_1838 22a5e4d556ecb2675f2df3ac86b025bb 334 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 192 205 1.0E-11 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 ALFP_1838 22a5e4d556ecb2675f2df3ac86b025bb 334 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 165 182 1.0E-11 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 ALFP_1838 22a5e4d556ecb2675f2df3ac86b025bb 334 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 115 126 1.0E-11 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 ALFP_1838 22a5e4d556ecb2675f2df3ac86b025bb 334 Gene3D G3DSA:3.40.710.10 60 330 2.9E-62 T 12-10-2018 ALFP_1838 22a5e4d556ecb2675f2df3ac86b025bb 334 SUPERFAMILY SSF56601 11 324 7.56E-55 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like ALFP_2371 7d5c680ad4ba15643cfcfb56d2ea34e9 206 Gene3D G3DSA:3.40.50.450 33 204 1.4E-49 T 12-10-2018 ALFP_2371 7d5c680ad4ba15643cfcfb56d2ea34e9 206 SUPERFAMILY SSF52309 40 192 1.4E-39 T 12-10-2018 ALFP_2371 7d5c680ad4ba15643cfcfb56d2ea34e9 206 Pfam PF05014 Nucleoside 2-deoxyribosyltransferase 43 179 3.0E-38 T 12-10-2018 IPR007710 Nucleoside 2-deoxyribosyltransferase Reactome: R-HSA-74259 ALFP_2509 6eabfd040ef3a72be27a19dfb4ff7d37 352 Pfam PF03739 Predicted permease YjgP/YjgQ family 1 339 1.0E-56 T 12-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 ALFP_2509 6eabfd040ef3a72be27a19dfb4ff7d37 352 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 339 4.9E-99 T 12-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 ALFP_2670 ba21cce27d30717b02466570e2f1bb0f 322 Gene3D G3DSA:3.30.43.10 1 57 1.1E-9 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 ALFP_2670 ba21cce27d30717b02466570e2f1bb0f 322 SUPERFAMILY SSF56194 194 321 7.32E-47 T 12-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_2670 ba21cce27d30717b02466570e2f1bb0f 322 Gene3D G3DSA:3.90.78.10 211 322 1.9E-42 T 12-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_2670 ba21cce27d30717b02466570e2f1bb0f 322 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 198 321 3.8E-34 T 12-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_2670 ba21cce27d30717b02466570e2f1bb0f 322 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 322 78.666 T 12-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_2670 ba21cce27d30717b02466570e2f1bb0f 322 Pfam PF01565 FAD binding domain 21 139 2.0E-18 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 ALFP_2670 ba21cce27d30717b02466570e2f1bb0f 322 SUPERFAMILY SSF56176 5 181 2.51E-34 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 ALFP_2670 ba21cce27d30717b02466570e2f1bb0f 322 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 3 318 2.0E-66 T 12-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_2670 ba21cce27d30717b02466570e2f1bb0f 322 Gene3D G3DSA:3.30.465.10 59 210 8.5E-56 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 ALFP_1940 524e40130838e515de3db0412b685c32 279 Pfam PF03358 NADPH-dependent FMN reductase 90 235 6.2E-31 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 ALFP_1940 524e40130838e515de3db0412b685c32 279 Pfam PF10982 Protein of unknown function (DUF2789) 4 76 1.3E-23 T 12-10-2018 IPR021250 Protein of unknown function DUF2789 ALFP_1940 524e40130838e515de3db0412b685c32 279 Gene3D G3DSA:3.40.50.360 84 277 7.0E-45 T 12-10-2018 IPR029039 Flavoprotein-like superfamily ALFP_1940 524e40130838e515de3db0412b685c32 279 Gene3D G3DSA:1.10.10.1130 1 81 1.5E-24 T 12-10-2018 ALFP_1940 524e40130838e515de3db0412b685c32 279 SUPERFAMILY SSF52218 90 262 2.79E-40 T 12-10-2018 IPR029039 Flavoprotein-like superfamily ALFP_1640 9a9882bac3c218c7382b7d7a0dde237b 215 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 163 205 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ALFP_1640 9a9882bac3c218c7382b7d7a0dde237b 215 SUPERFAMILY SSF46689 109 160 1.8E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1640 9a9882bac3c218c7382b7d7a0dde237b 215 Gene3D G3DSA:1.10.10.60 107 211 3.3E-27 T 12-10-2018 ALFP_1640 9a9882bac3c218c7382b7d7a0dde237b 215 SUPERFAMILY SSF52317 2 91 4.93E-28 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_1640 9a9882bac3c218c7382b7d7a0dde237b 215 Gene3D G3DSA:3.40.50.880 1 106 1.0E-33 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_1640 9a9882bac3c218c7382b7d7a0dde237b 215 Pfam PF12833 Helix-turn-helix domain 132 210 2.4E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1640 9a9882bac3c218c7382b7d7a0dde237b 215 SUPERFAMILY SSF46689 163 212 1.25E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1640 9a9882bac3c218c7382b7d7a0dde237b 215 SMART SM00342 126 209 1.5E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0252 3a981672d5d644a579d9901f37b8731d 394 SUPERFAMILY SSF56601 6 288 6.91E-79 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like ALFP_0252 3a981672d5d644a579d9901f37b8731d 394 Gene3D G3DSA:3.40.710.10 39 287 1.4E-87 T 12-10-2018 ALFP_0252 3a981672d5d644a579d9901f37b8731d 394 Gene3D G3DSA:2.60.410.10 288 378 4.6E-25 T 12-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ALFP_0252 3a981672d5d644a579d9901f37b8731d 394 SMART SM00936 288 378 7.5E-29 T 12-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ALFP_0252 3a981672d5d644a579d9901f37b8731d 394 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 44 267 2.1E-76 T 12-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 ALFP_0252 3a981672d5d644a579d9901f37b8731d 394 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 128 145 2.5E-18 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 ALFP_0252 3a981672d5d644a579d9901f37b8731d 394 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 75 86 2.5E-18 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 ALFP_0252 3a981672d5d644a579d9901f37b8731d 394 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 155 168 2.5E-18 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 ALFP_0252 3a981672d5d644a579d9901f37b8731d 394 SUPERFAMILY SSF69189 288 380 4.51E-23 T 12-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ALFP_0252 3a981672d5d644a579d9901f37b8731d 394 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 288 378 7.7E-21 T 12-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ALFP_1484 f46c1c92f8375743ef679ddb6b856be1 120 Pfam PF01592 NifU-like N terminal domain 1 117 4.5E-34 T 12-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 ALFP_1484 f46c1c92f8375743ef679ddb6b856be1 120 Gene3D G3DSA:3.90.1010.10 1 120 1.0E-35 T 12-10-2018 ALFP_1484 f46c1c92f8375743ef679ddb6b856be1 120 SUPERFAMILY SSF82649 1 117 1.62E-31 T 12-10-2018 ALFP_0306 475803e2d757125cade923a9e1945d95 377 Pfam PF01497 Periplasmic binding protein 86 314 2.5E-17 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain ALFP_0306 475803e2d757125cade923a9e1945d95 377 SUPERFAMILY SSF53807 25 344 3.92E-40 T 12-10-2018 ALFP_0306 475803e2d757125cade923a9e1945d95 377 Gene3D G3DSA:3.40.50.1980 23 374 2.9E-87 T 12-10-2018 ALFP_3615 d73d3e1c37af3395103cb16da2d744e3 207 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 96 1.7E-30 T 12-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 ALFP_3615 d73d3e1c37af3395103cb16da2d744e3 207 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 207 34.145 T 12-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 ALFP_3615 d73d3e1c37af3395103cb16da2d744e3 207 Gene3D G3DSA:3.10.290.10 96 192 5.0E-77 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 ALFP_3615 d73d3e1c37af3395103cb16da2d744e3 207 SMART SM01390 3 96 1.0E-47 T 12-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 ALFP_3615 d73d3e1c37af3395103cb16da2d744e3 207 Pfam PF01479 S4 domain 98 144 7.4E-17 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3615 d73d3e1c37af3395103cb16da2d744e3 207 Gene3D G3DSA:1.10.1050.10 6 207 5.0E-77 T 12-10-2018 ALFP_3615 d73d3e1c37af3395103cb16da2d744e3 207 SMART SM00363 97 161 5.8E-16 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3615 d73d3e1c37af3395103cb16da2d744e3 207 ProSitePatterns PS00632 Ribosomal protein S4 signature. 95 119 - T 12-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3615 d73d3e1c37af3395103cb16da2d744e3 207 SUPERFAMILY SSF55174 3 207 9.68E-67 T 12-10-2018 ALFP_3615 d73d3e1c37af3395103cb16da2d744e3 207 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 207 4.4E-76 T 12-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 ALFP_2870 9aaf191735a402bfef0d8ec849a813cf 434 Pfam PF01266 FAD dependent oxidoreductase 31 383 2.3E-46 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 ALFP_2870 9aaf191735a402bfef0d8ec849a813cf 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 31 53 3.7E-5 T 12-10-2018 ALFP_2870 9aaf191735a402bfef0d8ec849a813cf 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 65 80 3.7E-5 T 12-10-2018 ALFP_2870 9aaf191735a402bfef0d8ec849a813cf 434 Gene3D G3DSA:3.30.9.10 124 345 1.8E-70 T 12-10-2018 ALFP_2870 9aaf191735a402bfef0d8ec849a813cf 434 SUPERFAMILY SSF51905 30 392 4.47E-40 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2870 9aaf191735a402bfef0d8ec849a813cf 434 Gene3D G3DSA:3.50.50.60 31 383 1.8E-70 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2712 47f6cdc96996fd3491f02d0ed011ff68 398 SUPERFAMILY SSF103473 16 393 3.53E-30 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2712 47f6cdc96996fd3491f02d0ed011ff68 398 Pfam PF07690 Major Facilitator Superfamily 216 392 1.0E-13 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_2712 47f6cdc96996fd3491f02d0ed011ff68 398 Gene3D G3DSA:1.20.1250.20 8 390 7.6E-22 T 12-10-2018 ALFP_2094 716849065eaecff892b39022414a82ff 501 SUPERFAMILY SSF48452 86 210 7.11E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2094 716849065eaecff892b39022414a82ff 501 Pfam PF07219 HemY protein N-terminus 26 135 3.5E-24 T 12-10-2018 IPR010817 HemY, N-terminal ALFP_2094 716849065eaecff892b39022414a82ff 501 SUPERFAMILY SSF48452 270 396 1.35E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2094 716849065eaecff892b39022414a82ff 501 Gene3D G3DSA:1.25.40.10 78 229 3.4E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2094 716849065eaecff892b39022414a82ff 501 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 3 389 1.4E-83 T 12-10-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 ALFP_2094 716849065eaecff892b39022414a82ff 501 Pfam PF13181 Tetratricopeptide repeat 366 393 4.7E-4 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_1130 6bb6f645d57d137aee42564b6559c5c5 485 SUPERFAMILY SSF52091 394 470 7.65E-8 T 12-10-2018 IPR036513 STAS domain superfamily ALFP_1130 6bb6f645d57d137aee42564b6559c5c5 485 Pfam PF00916 Sulfate permease family 161 354 2.6E-29 T 12-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 ALFP_1130 6bb6f645d57d137aee42564b6559c5c5 485 Pfam PF00916 Sulfate permease family 15 144 5.0E-28 T 12-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 ALFP_1130 6bb6f645d57d137aee42564b6559c5c5 485 Gene3D G3DSA:3.30.750.24 385 481 6.3E-24 T 12-10-2018 IPR036513 STAS domain superfamily ALFP_3283 c8f4861744232b190b7408dff7611fce 252 Pfam PF00535 Glycosyl transferase family 2 11 169 3.4E-39 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 ALFP_3283 c8f4861744232b190b7408dff7611fce 252 SUPERFAMILY SSF53448 9 226 1.08E-58 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_3283 c8f4861744232b190b7408dff7611fce 252 Gene3D G3DSA:3.90.550.10 2 236 2.5E-60 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_2744 2a68e5bb09a9ca247053881a54c738d2 229 PIRSF PIRSF036382 26 218 1.0E-40 T 12-10-2018 IPR008327 Signal transduction response regulator, antiterminator ALFP_2744 2a68e5bb09a9ca247053881a54c738d2 229 Gene3D G3DSA:1.10.10.10 158 216 3.6E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2744 2a68e5bb09a9ca247053881a54c738d2 229 SUPERFAMILY SSF52172 29 211 1.94E-35 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_2744 2a68e5bb09a9ca247053881a54c738d2 229 Pfam PF03861 ANTAR domain 159 211 7.8E-14 T 12-10-2018 IPR005561 ANTAR domain GO:0003723 ALFP_2744 2a68e5bb09a9ca247053881a54c738d2 229 SMART SM01012 156 211 2.2E-13 T 12-10-2018 IPR005561 ANTAR domain GO:0003723 ALFP_2744 2a68e5bb09a9ca247053881a54c738d2 229 Gene3D G3DSA:3.40.50.2300 25 149 3.2E-39 T 12-10-2018 ALFP_0870 9d7e3286c8c50aee365a2770c4e0e338 298 SUPERFAMILY SSF56349 1 288 2.27E-60 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 ALFP_0870 9d7e3286c8c50aee365a2770c4e0e338 298 Pfam PF00589 Phage integrase family 112 283 9.7E-52 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 ALFP_0870 9d7e3286c8c50aee365a2770c4e0e338 298 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 5 298 56.059 T 12-10-2018 IPR023009 Tyrosine recombinase XerC/XerD ALFP_0870 9d7e3286c8c50aee365a2770c4e0e338 298 Gene3D G3DSA:1.10.150.130 3 98 4.8E-20 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal ALFP_0870 9d7e3286c8c50aee365a2770c4e0e338 298 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 3 298 56.291 T 12-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 ALFP_0870 9d7e3286c8c50aee365a2770c4e0e338 298 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 8 90 1.3E-20 T 12-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 ALFP_0870 9d7e3286c8c50aee365a2770c4e0e338 298 Gene3D G3DSA:1.10.443.10 111 292 4.5E-67 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 ALFP_0870 9d7e3286c8c50aee365a2770c4e0e338 298 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 9 298 7.9E-110 T 12-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 ALFP_2655 4af8978dd8b2c8cbe2fc8c4a632564b1 196 Pfam PF01025 GrpE 39 193 2.0E-46 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 ALFP_2655 4af8978dd8b2c8cbe2fc8c4a632564b1 196 PRINTS PR00773 GrpE protein signature 173 192 1.6E-25 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 ALFP_2655 4af8978dd8b2c8cbe2fc8c4a632564b1 196 PRINTS PR00773 GrpE protein signature 94 109 1.6E-25 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 ALFP_2655 4af8978dd8b2c8cbe2fc8c4a632564b1 196 PRINTS PR00773 GrpE protein signature 147 162 1.6E-25 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 ALFP_2655 4af8978dd8b2c8cbe2fc8c4a632564b1 196 PRINTS PR00773 GrpE protein signature 66 82 1.6E-25 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 ALFP_2655 4af8978dd8b2c8cbe2fc8c4a632564b1 196 SUPERFAMILY SSF58014 46 136 6.15E-23 T 12-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 ALFP_2655 4af8978dd8b2c8cbe2fc8c4a632564b1 196 SUPERFAMILY SSF51064 143 194 3.53E-15 T 12-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 ALFP_2655 4af8978dd8b2c8cbe2fc8c4a632564b1 196 Gene3D G3DSA:3.90.20.20 36 136 2.9E-24 T 12-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 ALFP_2655 4af8978dd8b2c8cbe2fc8c4a632564b1 196 Gene3D G3DSA:2.30.22.10 140 194 4.4E-19 T 12-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 ALFP_2655 4af8978dd8b2c8cbe2fc8c4a632564b1 196 Hamap MF_01151 Protein GrpE [grpE]. 8 194 19.448 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 ALFP_2655 4af8978dd8b2c8cbe2fc8c4a632564b1 196 ProSitePatterns PS01071 grpE protein signature. 150 192 - T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 ALFP_1078 b1e18c79bb39eb397091639fc4a06406 250 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 10 220 6.7E-77 T 12-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_1078 b1e18c79bb39eb397091639fc4a06406 250 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 183 225 2.1E-14 T 12-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 ALFP_1078 b1e18c79bb39eb397091639fc4a06406 250 Gene3D G3DSA:3.30.2350.10 2 244 5.2E-90 T 12-10-2018 ALFP_1078 b1e18c79bb39eb397091639fc4a06406 250 SUPERFAMILY SSF55120 10 226 1.58E-78 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_1078 b1e18c79bb39eb397091639fc4a06406 250 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 32 182 6.4E-56 T 12-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 ALFP_1078 b1e18c79bb39eb397091639fc4a06406 250 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 10 247 18.101 T 12-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_0965 73281f61399f6ef973326c3bb104cf79 560 Gene3D G3DSA:3.40.1080.10 36 250 1.0E-17 T 12-10-2018 ALFP_0965 73281f61399f6ef973326c3bb104cf79 560 TIGRFAM TIGR01110 mdcA: malonate decarboxylase, alpha subunit 6 560 1.9E-287 T 12-10-2018 IPR005777 Acetyl-S-ACP:malonate ACP transferase MetaCyc: PWY-5794|MetaCyc: PWY-6060 ALFP_0965 73281f61399f6ef973326c3bb104cf79 560 SUPERFAMILY SSF100950 230 486 7.18E-22 T 12-10-2018 IPR037171 NagB/RpiA transferase-like ALFP_0965 73281f61399f6ef973326c3bb104cf79 560 Pfam PF16957 Malonate decarboxylase, alpha subunit, transporter 5 560 1.5E-294 T 12-10-2018 IPR005777 Acetyl-S-ACP:malonate ACP transferase MetaCyc: PWY-5794|MetaCyc: PWY-6060 ALFP_0965 73281f61399f6ef973326c3bb104cf79 560 SUPERFAMILY SSF100950 40 282 4.61E-32 T 12-10-2018 IPR037171 NagB/RpiA transferase-like ALFP_1194 e78d2b2083058ea6e7a075376ba86db0 782 SMART SM00962 171 366 2.1E-41 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 ALFP_1194 e78d2b2083058ea6e7a075376ba86db0 782 Pfam PF00448 SRP54-type protein, GTPase domain 174 365 1.6E-31 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 ALFP_1194 e78d2b2083058ea6e7a075376ba86db0 782 Gene3D G3DSA:3.40.50.300 165 354 1.6E-46 T 12-10-2018 ALFP_1194 e78d2b2083058ea6e7a075376ba86db0 782 Gene3D G3DSA:1.20.120.1380 139 356 1.6E-46 T 12-10-2018 ALFP_1194 e78d2b2083058ea6e7a075376ba86db0 782 SMART SM00382 170 329 2.9E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1194 e78d2b2083058ea6e7a075376ba86db0 782 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 1 259 2.4E-64 T 12-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 ALFP_1194 e78d2b2083058ea6e7a075376ba86db0 782 SUPERFAMILY SSF52540 169 352 2.57E-25 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2032 72deadb7afc7a12dd9875cd7ab2aa45d 816 Pfam PF01804 Penicillin amidase 30 801 2.4E-139 T 12-10-2018 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0017000 ALFP_2032 72deadb7afc7a12dd9875cd7ab2aa45d 816 Gene3D G3DSA:3.60.20.10 272 791 1.9E-226 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal ALFP_2032 72deadb7afc7a12dd9875cd7ab2aa45d 816 PIRSF PIRSF001227 22 811 2.3E-115 T 12-10-2018 IPR014395 Penicillin/GL-7-ACA/AHL acylase GO:0016811 ALFP_2032 72deadb7afc7a12dd9875cd7ab2aa45d 816 Gene3D G3DSA:1.10.1400.10 554 712 1.9E-226 T 12-10-2018 ALFP_2032 72deadb7afc7a12dd9875cd7ab2aa45d 816 Gene3D G3DSA:1.10.287.150 177 206 1.4E-22 T 12-10-2018 ALFP_2032 72deadb7afc7a12dd9875cd7ab2aa45d 816 SUPERFAMILY SSF56235 30 812 1.98E-199 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal ALFP_2032 72deadb7afc7a12dd9875cd7ab2aa45d 816 Gene3D G3DSA:2.30.120.10 338 410 1.9E-226 T 12-10-2018 ALFP_2032 72deadb7afc7a12dd9875cd7ab2aa45d 816 Gene3D G3DSA:1.10.439.10 27 176 1.3E-47 T 12-10-2018 IPR023343 Penicillin amidase type, domain 1 GO:0016811 ALFP_2469 95249203dba17ab370dea26882b6d6db 285 Gene3D G3DSA:1.10.3720.10 85 277 3.1E-36 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2469 95249203dba17ab370dea26882b6d6db 285 SUPERFAMILY SSF161098 88 272 1.18E-41 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2469 95249203dba17ab370dea26882b6d6db 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 278 1.0E-25 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_2674 4dd14651828a3960cecbe9dcd8e83dad 446 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 16 436 3.4E-91 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 ALFP_2674 4dd14651828a3960cecbe9dcd8e83dad 446 Gene3D G3DSA:1.20.1600.10 32 437 4.8E-116 T 12-10-2018 ALFP_2674 4dd14651828a3960cecbe9dcd8e83dad 446 Pfam PF02321 Outer membrane efflux protein 255 434 3.6E-16 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_2674 4dd14651828a3960cecbe9dcd8e83dad 446 Pfam PF02321 Outer membrane efflux protein 42 227 2.1E-26 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_2674 4dd14651828a3960cecbe9dcd8e83dad 446 Gene3D G3DSA:2.20.200.10 79 325 4.8E-116 T 12-10-2018 ALFP_2674 4dd14651828a3960cecbe9dcd8e83dad 446 SUPERFAMILY SSF56954 33 438 4.32E-92 T 12-10-2018 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:1.20.5.340 62 175 2.2E-11 T 12-10-2018 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 SUPERFAMILY SSF101967 2374 2494 1.96E-6 T 12-10-2018 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 SUPERFAMILY SSF101967 749 910 6.15E-27 T 12-10-2018 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:1.20.5.170 890 916 9.0E-12 T 12-10-2018 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:2.20.25.490 1159 1216 1.2E-13 T 12-10-2018 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:2.20.25.490 1585 1638 1.7E-13 T 12-10-2018 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:2.20.25.490 2026 2084 8.0E-13 T 12-10-2018 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:2.20.25.490 1804 1861 1.2E-13 T 12-10-2018 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:2.20.25.490 948 1005 7.0E-13 T 12-10-2018 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:2.150.10.10 387 533 9.6E-17 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:2.150.10.10 180 239 3.7E-11 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:2.150.10.10 1247 1397 1.2E-6 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 SUPERFAMILY SSF101967 191 334 4.05E-14 T 12-10-2018 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:3.30.390.90 2272 2310 2.1E-12 T 12-10-2018 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Pfam PF05658 Head domain of trimeric autotransporter adhesin 561 585 7.7E-5 T 12-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Pfam PF05658 Head domain of trimeric autotransporter adhesin 193 219 7.2E-7 T 12-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:2.150.10.10 240 368 3.1E-13 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:2.150.10.10 653 744 1.5E-9 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:2.150.10.10 543 652 1.6E-14 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 SUPERFAMILY SSF101967 656 740 1.24E-8 T 12-10-2018 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:3.30.1300.30 2494 2590 3.4E-37 T 12-10-2018 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 SUPERFAMILY SSF54523 2483 2590 1.32E-26 T 12-10-2018 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1786 1826 1.1E-9 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2009 2049 5.8E-10 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1141 1181 1.4E-8 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 485 516 1.5E-9 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1352 1392 2.4E-9 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1563 1604 1.2E-9 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2473 2510 5.5E-12 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 885 927 9.8E-11 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2305 2325 6.5E-9 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 SUPERFAMILY SSF101967 557 651 2.88E-11 T 12-10-2018 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:2.150.10.10 2336 2493 2.8E-6 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:2.150.10.10 1408 1584 6.1E-7 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Gene3D G3DSA:2.150.10.10 745 889 5.4E-22 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 SUPERFAMILY SSF101967 1449 1587 1.7E-5 T 12-10-2018 ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 Pfam PF03895 YadA-like membrane anchor domain 2530 2590 1.7E-19 T 12-10-2018 IPR005594 YadA-like, C-terminal ALFP_2765 4fab2a72c1f061190f66b5027b2ef719 2590 SUPERFAMILY SSF101967 347 508 6.15E-14 T 12-10-2018 ALFP_2886 8d529c40f68c32d7cd8ceb6b6095e5e3 275 Hamap MF_01215 Orotidine 5'-phosphate decarboxylase [pyrF]. 2 269 34.104 T 12-10-2018 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_2886 8d529c40f68c32d7cd8ceb6b6095e5e3 275 SUPERFAMILY SSF51366 3 267 1.45E-75 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 ALFP_2886 8d529c40f68c32d7cd8ceb6b6095e5e3 275 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 90 103 - T 12-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 ALFP_2886 8d529c40f68c32d7cd8ceb6b6095e5e3 275 TIGRFAM TIGR02127 pyrF_sub2: orotidine 5'-phosphate decarboxylase 3 251 2.7E-71 T 12-10-2018 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_2886 8d529c40f68c32d7cd8ceb6b6095e5e3 275 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 16 247 3.7E-29 T 12-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 ALFP_2886 8d529c40f68c32d7cd8ceb6b6095e5e3 275 Gene3D G3DSA:3.20.20.70 1 272 1.1E-97 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_2886 8d529c40f68c32d7cd8ceb6b6095e5e3 275 SMART SM00934 17 256 5.8E-47 T 12-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 ALFP_1066 e37a58733e21d6943f9adf21ce9d4c0c 255 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 23 249 5.3E-71 T 12-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase ALFP_1066 e37a58733e21d6943f9adf21ce9d4c0c 255 SUPERFAMILY SSF64438 11 252 2.01E-73 T 12-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic ALFP_1066 e37a58733e21d6943f9adf21ce9d4c0c 255 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 29 245 3.6E-47 T 12-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase ALFP_1066 e37a58733e21d6943f9adf21ce9d4c0c 255 Gene3D G3DSA:3.60.140.10 2 253 1.5E-78 T 12-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily ALFP_2991 5636ab0c581a39d4892ea6a94026b485 365 Gene3D G3DSA:1.10.8.60 291 356 1.5E-17 T 12-10-2018 ALFP_2991 5636ab0c581a39d4892ea6a94026b485 365 SMART SM00382 140 283 6.1E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2991 5636ab0c581a39d4892ea6a94026b485 365 SUPERFAMILY SSF52540 120 357 1.95E-67 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2991 5636ab0c581a39d4892ea6a94026b485 365 Gene3D G3DSA:3.40.50.300 107 290 4.0E-65 T 12-10-2018 ALFP_2991 5636ab0c581a39d4892ea6a94026b485 365 Pfam PF00158 Sigma-54 interaction domain 121 287 2.0E-66 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 ALFP_2991 5636ab0c581a39d4892ea6a94026b485 365 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 332 341 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site ALFP_0272 81f68303003ddb0746bf144a54a8ab70 187 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 186 2.8E-83 T 12-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 ALFP_0272 81f68303003ddb0746bf144a54a8ab70 187 SUPERFAMILY SSF52317 2 186 1.53E-58 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_0272 81f68303003ddb0746bf144a54a8ab70 187 PRINTS PR00097 Anthranilate synthase component II signature 164 177 4.8E-35 T 12-10-2018 ALFP_0272 81f68303003ddb0746bf144a54a8ab70 187 PRINTS PR00097 Anthranilate synthase component II signature 119 131 4.8E-35 T 12-10-2018 ALFP_0272 81f68303003ddb0746bf144a54a8ab70 187 PRINTS PR00097 Anthranilate synthase component II signature 2 16 4.8E-35 T 12-10-2018 ALFP_0272 81f68303003ddb0746bf144a54a8ab70 187 PRINTS PR00097 Anthranilate synthase component II signature 47 56 4.8E-35 T 12-10-2018 ALFP_0272 81f68303003ddb0746bf144a54a8ab70 187 PRINTS PR00097 Anthranilate synthase component II signature 74 85 4.8E-35 T 12-10-2018 ALFP_0272 81f68303003ddb0746bf144a54a8ab70 187 PRINTS PR00097 Anthranilate synthase component II signature 99 107 4.8E-35 T 12-10-2018 ALFP_0272 81f68303003ddb0746bf144a54a8ab70 187 Pfam PF00117 Glutamine amidotransferase class-I 4 185 9.1E-57 T 12-10-2018 IPR017926 Glutamine amidotransferase ALFP_0272 81f68303003ddb0746bf144a54a8ab70 187 Gene3D G3DSA:3.40.50.880 1 187 9.1E-67 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_0272 81f68303003ddb0746bf144a54a8ab70 187 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 2.2E-5 T 12-10-2018 ALFP_0272 81f68303003ddb0746bf144a54a8ab70 187 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 2.2E-5 T 12-10-2018 ALFP_0272 81f68303003ddb0746bf144a54a8ab70 187 PRINTS PR00096 Glutamine amidotransferase superfamily signature 164 177 3.1E-13 T 12-10-2018 ALFP_0272 81f68303003ddb0746bf144a54a8ab70 187 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 3.1E-13 T 12-10-2018 ALFP_0272 81f68303003ddb0746bf144a54a8ab70 187 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 3.1E-13 T 12-10-2018 ALFP_3055 68b7c69435da7fe412532b5f7807eb12 92 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 3 92 1.8E-27 T 12-10-2018 IPR007711 Toxin HigB-1 ALFP_3055 68b7c69435da7fe412532b5f7807eb12 92 SUPERFAMILY SSF143011 1 92 3.01E-17 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily ALFP_3055 68b7c69435da7fe412532b5f7807eb12 92 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 29 89 1.0E-7 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family ALFP_3055 68b7c69435da7fe412532b5f7807eb12 92 Gene3D G3DSA:3.30.2310.20 1 92 1.8E-37 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily ALFP_2604 5c3ffb01fdd1aa7caa1a7c7a49f7ae4c 262 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 36.127 T 12-10-2018 IPR005583 Peroxide stress protein YaaA ALFP_2604 5c3ffb01fdd1aa7caa1a7c7a49f7ae4c 262 Pfam PF03883 Peroxide stress protein YaaA 1 243 7.0E-91 T 12-10-2018 IPR005583 Peroxide stress protein YaaA ALFP_3305 a9adb048000dba66329f7edc12d74e85 193 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 5 188 36.81 T 12-10-2018 IPR004507 Flavin prenyltransferase UbiX-like ALFP_3305 a9adb048000dba66329f7edc12d74e85 193 SUPERFAMILY SSF52507 5 182 6.28E-61 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 ALFP_3305 a9adb048000dba66329f7edc12d74e85 193 Pfam PF02441 Flavoprotein 6 168 3.1E-24 T 12-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 ALFP_3305 a9adb048000dba66329f7edc12d74e85 193 Gene3D G3DSA:3.40.50.1950 5 193 7.9E-75 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 ALFP_3305 a9adb048000dba66329f7edc12d74e85 193 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 6 186 2.1E-73 T 12-10-2018 IPR004507 Flavin prenyltransferase UbiX-like ALFP_2226 018047b32df8ace312fa1f6b0ac27dcb 427 Pfam PF13393 Histidyl-tRNA synthetase 13 315 2.1E-46 T 12-10-2018 ALFP_2226 018047b32df8ace312fa1f6b0ac27dcb 427 Gene3D G3DSA:3.30.930.10 5 327 2.1E-118 T 12-10-2018 ALFP_2226 018047b32df8ace312fa1f6b0ac27dcb 427 PIRSF PIRSF001549 4 427 2.1E-114 T 12-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 ALFP_2226 018047b32df8ace312fa1f6b0ac27dcb 427 SUPERFAMILY SSF52954 329 426 2.29E-19 T 12-10-2018 ALFP_2226 018047b32df8ace312fa1f6b0ac27dcb 427 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 10 406 8.9E-150 T 12-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 ALFP_2226 018047b32df8ace312fa1f6b0ac27dcb 427 SUPERFAMILY SSF55681 9 319 3.45E-97 T 12-10-2018 ALFP_2226 018047b32df8ace312fa1f6b0ac27dcb 427 Pfam PF03129 Anticodon binding domain 333 425 7.8E-11 T 12-10-2018 IPR004154 Anticodon-binding ALFP_2226 018047b32df8ace312fa1f6b0ac27dcb 427 Gene3D G3DSA:3.40.50.800 330 426 9.1E-22 T 12-10-2018 IPR036621 Anticodon-binding domain superfamily ALFP_2226 018047b32df8ace312fa1f6b0ac27dcb 427 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 6 425 31.807 T 12-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 ALFP_2263 a37a9f52c7e9fcfc6eef9865b2e40028 291 PRINTS PR00118 Beta-lactamase class A signature 33 57 1.5E-59 T 12-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 ALFP_2263 a37a9f52c7e9fcfc6eef9865b2e40028 291 PRINTS PR00118 Beta-lactamase class A signature 64 81 1.5E-59 T 12-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 ALFP_2263 a37a9f52c7e9fcfc6eef9865b2e40028 291 PRINTS PR00118 Beta-lactamase class A signature 218 233 1.5E-59 T 12-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 ALFP_2263 a37a9f52c7e9fcfc6eef9865b2e40028 291 PRINTS PR00118 Beta-lactamase class A signature 103 128 1.5E-59 T 12-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 ALFP_2263 a37a9f52c7e9fcfc6eef9865b2e40028 291 PRINTS PR00118 Beta-lactamase class A signature 139 163 1.5E-59 T 12-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 ALFP_2263 a37a9f52c7e9fcfc6eef9865b2e40028 291 PRINTS PR00118 Beta-lactamase class A signature 165 190 1.5E-59 T 12-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 ALFP_2263 a37a9f52c7e9fcfc6eef9865b2e40028 291 PRINTS PR00118 Beta-lactamase class A signature 201 216 1.5E-59 T 12-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 ALFP_2263 a37a9f52c7e9fcfc6eef9865b2e40028 291 Gene3D G3DSA:3.40.710.10 20 285 1.0E-67 T 12-10-2018 ALFP_2263 a37a9f52c7e9fcfc6eef9865b2e40028 291 Pfam PF13354 Beta-lactamase enzyme family 54 258 1.4E-33 T 12-10-2018 ALFP_2263 a37a9f52c7e9fcfc6eef9865b2e40028 291 SUPERFAMILY SSF56601 32 285 4.36E-70 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like ALFP_2422 4dcf7e793083af2a7f47503a7516e486 261 SMART SM00382 44 225 2.2E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2422 4dcf7e793083af2a7f47503a7516e486 261 Gene3D G3DSA:3.40.50.300 14 246 8.6E-57 T 12-10-2018 ALFP_2422 4dcf7e793083af2a7f47503a7516e486 261 SUPERFAMILY SSF52540 16 243 3.82E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2422 4dcf7e793083af2a7f47503a7516e486 261 Pfam PF00005 ABC transporter 35 174 5.9E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2422 4dcf7e793083af2a7f47503a7516e486 261 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0861 abe0fa6516004742233783c785c1c324 203 Gene3D G3DSA:1.20.1260.10 4 144 2.4E-6 T 12-10-2018 IPR012347 Ferritin-like ALFP_0861 abe0fa6516004742233783c785c1c324 203 SUPERFAMILY SSF47240 6 121 1.85E-10 T 12-10-2018 IPR009078 Ferritin-like superfamily ALFP_2255 77ca816d3ac4c113213c8acddb291809 202 Gene3D G3DSA:3.10.450.50 32 201 8.5E-35 T 12-10-2018 ALFP_2255 77ca816d3ac4c113213c8acddb291809 202 Pfam PF00866 Ring hydroxylating beta subunit 57 189 7.0E-21 T 12-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 ALFP_2255 77ca816d3ac4c113213c8acddb291809 202 SUPERFAMILY SSF54427 44 199 5.43E-31 T 12-10-2018 IPR032710 NTF2-like domain superfamily ALFP_1249 ebea59f4b6c654204da856bb0d7a2a68 518 SUPERFAMILY SSF56436 100 304 1.27E-26 T 12-10-2018 IPR016187 C-type lectin fold ALFP_1249 ebea59f4b6c654204da856bb0d7a2a68 518 Gene3D G3DSA:3.90.1580.10 84 306 6.6E-29 T 12-10-2018 ALFP_1249 ebea59f4b6c654204da856bb0d7a2a68 518 Pfam PF03781 Sulfatase-modifying factor enzyme 1 121 304 5.3E-29 T 12-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 ALFP_3211 d54c598a87d17b2f3143f84de9a429ac 321 SMART SM00978 187 314 1.5E-31 T 12-10-2018 IPR007379 Tim44-like domain ALFP_3211 d54c598a87d17b2f3143f84de9a429ac 321 SUPERFAMILY SSF54427 195 316 7.45E-13 T 12-10-2018 IPR032710 NTF2-like domain superfamily ALFP_3211 d54c598a87d17b2f3143f84de9a429ac 321 Gene3D G3DSA:3.10.450.240 196 292 9.4E-6 T 12-10-2018 ALFP_3211 d54c598a87d17b2f3143f84de9a429ac 321 Pfam PF04280 Tim44-like domain 196 314 1.5E-12 T 12-10-2018 IPR007379 Tim44-like domain ALFP_2694 21709f04427cd69db660f4c0af3554b1 269 Gene3D G3DSA:3.30.450.40 92 268 2.5E-44 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_2694 21709f04427cd69db660f4c0af3554b1 269 SUPERFAMILY SSF46785 19 92 8.92E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2694 21709f04427cd69db660f4c0af3554b1 269 SMART SM00346 19 111 5.6E-12 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_2694 21709f04427cd69db660f4c0af3554b1 269 Gene3D G3DSA:1.10.10.10 14 91 3.4E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2694 21709f04427cd69db660f4c0af3554b1 269 Pfam PF09339 IclR helix-turn-helix domain 21 70 3.1E-12 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_2694 21709f04427cd69db660f4c0af3554b1 269 Pfam PF01614 Bacterial transcriptional regulator 140 261 5.4E-17 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal ALFP_2694 21709f04427cd69db660f4c0af3554b1 269 SUPERFAMILY SSF55781 87 264 3.2E-34 T 12-10-2018 ALFP_0271 a81fea376da79d0b438779fe0836e4bc 344 Pfam PF00591 Glycosyl transferase family, a/b domain 79 328 1.6E-93 T 12-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 ALFP_0271 a81fea376da79d0b438779fe0836e4bc 344 Gene3D G3DSA:1.20.970.10 1 72 4.5E-29 T 12-10-2018 ALFP_0271 a81fea376da79d0b438779fe0836e4bc 344 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 8 338 37.555 T 12-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 ALFP_0271 a81fea376da79d0b438779fe0836e4bc 344 SUPERFAMILY SSF52418 79 341 1.24E-96 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 ALFP_0271 a81fea376da79d0b438779fe0836e4bc 344 Pfam PF02885 Glycosyl transferase family, helical bundle domain 11 69 3.2E-10 T 12-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 ALFP_0271 a81fea376da79d0b438779fe0836e4bc 344 Gene3D G3DSA:3.40.1030.10 76 343 3.1E-107 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 ALFP_0271 a81fea376da79d0b438779fe0836e4bc 344 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 12 336 3.8E-126 T 12-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 ALFP_0271 a81fea376da79d0b438779fe0836e4bc 344 SUPERFAMILY SSF47648 6 72 2.88E-15 T 12-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 ALFP_3232 3968fe5a9fa4001ba40d5898aeae0564 201 Gene3D G3DSA:3.40.50.1000 24 191 2.1E-49 T 12-10-2018 IPR023214 HAD superfamily ALFP_3232 3968fe5a9fa4001ba40d5898aeae0564 201 Pfam PF08282 haloacid dehalogenase-like hydrolase 106 169 5.3E-5 T 12-10-2018 ALFP_3232 3968fe5a9fa4001ba40d5898aeae0564 201 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 31 182 5.5E-43 T 12-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 ALFP_3232 3968fe5a9fa4001ba40d5898aeae0564 201 PIRSF PIRSF006118 18 191 1.6E-61 T 12-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 ALFP_3232 3968fe5a9fa4001ba40d5898aeae0564 201 SUPERFAMILY SSF56784 28 186 9.31E-37 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_2101 f7048c6a96e59edb73b3481df6ab92e9 386 SUPERFAMILY SSF56059 1 238 1.34E-82 T 12-10-2018 ALFP_2101 f7048c6a96e59edb73b3481df6ab92e9 386 Gene3D G3DSA:3.40.50.261 240 386 1.4E-57 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 ALFP_2101 f7048c6a96e59edb73b3481df6ab92e9 386 Gene3D G3DSA:3.30.470.20 1 234 1.6E-94 T 12-10-2018 ALFP_2101 f7048c6a96e59edb73b3481df6ab92e9 386 SUPERFAMILY SSF52210 239 385 4.32E-54 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 ALFP_2101 f7048c6a96e59edb73b3481df6ab92e9 386 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 43.586 T 12-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 ALFP_2101 f7048c6a96e59edb73b3481df6ab92e9 386 Pfam PF08442 ATP-grasp domain 2 202 6.0E-78 T 12-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 ALFP_2101 f7048c6a96e59edb73b3481df6ab92e9 386 Gene3D G3DSA:3.30.1490.20 21 104 1.6E-94 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 ALFP_2101 f7048c6a96e59edb73b3481df6ab92e9 386 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 12-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 ALFP_2101 f7048c6a96e59edb73b3481df6ab92e9 386 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 4.0E-156 T 12-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 ALFP_2101 f7048c6a96e59edb73b3481df6ab92e9 386 PIRSF PIRSF001554 1 386 1.3E-150 T 12-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 ALFP_2101 f7048c6a96e59edb73b3481df6ab92e9 386 Pfam PF00549 CoA-ligase 262 381 1.2E-24 T 12-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 ALFP_2508 fbf846ed4d5be6bc1dbd01c36198d07e 297 Gene3D G3DSA:1.10.10.10 1 89 7.2E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2508 fbf846ed4d5be6bc1dbd01c36198d07e 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 9.4E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2508 fbf846ed4d5be6bc1dbd01c36198d07e 297 SUPERFAMILY SSF53850 89 289 1.56E-38 T 12-10-2018 ALFP_2508 fbf846ed4d5be6bc1dbd01c36198d07e 297 Pfam PF03466 LysR substrate binding domain 89 286 8.0E-36 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_2508 fbf846ed4d5be6bc1dbd01c36198d07e 297 Gene3D G3DSA:3.40.190.290 91 286 3.0E-35 T 12-10-2018 ALFP_2508 fbf846ed4d5be6bc1dbd01c36198d07e 297 SUPERFAMILY SSF46785 1 111 5.45E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1514 5917e83ecf435b3b7c77e8702d9c03af 283 Pfam PF00665 Integrase core domain 109 223 1.1E-26 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 ALFP_1514 5917e83ecf435b3b7c77e8702d9c03af 283 Pfam PF13276 HTH-like domain 29 85 8.5E-17 T 12-10-2018 IPR025948 HTH-like domain ALFP_1514 5917e83ecf435b3b7c77e8702d9c03af 283 Gene3D G3DSA:3.30.420.10 106 252 4.7E-11 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 ALFP_1514 5917e83ecf435b3b7c77e8702d9c03af 283 SUPERFAMILY SSF53098 103 264 1.27E-36 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily ALFP_1361 13c223269c4f294e46bbd5934eed4958 156 Pfam PF00583 Acetyltransferase (GNAT) family 37 120 3.9E-13 T 12-10-2018 IPR000182 GNAT domain ALFP_1361 13c223269c4f294e46bbd5934eed4958 156 Gene3D G3DSA:3.40.630.30 8 156 1.8E-34 T 12-10-2018 ALFP_1361 13c223269c4f294e46bbd5934eed4958 156 SUPERFAMILY SSF55729 20 155 8.95E-23 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_2623 cf9aef76f4ce5e7e858bbc134571476d 418 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 31 413 1.4E-114 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 ALFP_2623 cf9aef76f4ce5e7e858bbc134571476d 418 SUPERFAMILY SSF53659 4 418 7.68E-145 T 12-10-2018 ALFP_2623 cf9aef76f4ce5e7e858bbc134571476d 418 SMART SM01329 30 414 9.6E-173 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 ALFP_2623 cf9aef76f4ce5e7e858bbc134571476d 418 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 3 418 1.7E-222 T 12-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 ALFP_2623 cf9aef76f4ce5e7e858bbc134571476d 418 Gene3D G3DSA:3.40.718.10 1 418 1.5E-187 T 12-10-2018 ALFP_2623 cf9aef76f4ce5e7e858bbc134571476d 418 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 305 324 - T 12-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 ALFP_2972 4a587d542284d1f0dae84ca01e2cf09c 261 PIRSF PIRSF000094 1 261 4.1E-111 T 12-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 ALFP_2972 4a587d542284d1f0dae84ca01e2cf09c 261 SUPERFAMILY SSF51735 5 254 8.71E-66 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2972 4a587d542284d1f0dae84ca01e2cf09c 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 2.1E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2972 4a587d542284d1f0dae84ca01e2cf09c 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.1E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2972 4a587d542284d1f0dae84ca01e2cf09c 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.1E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2972 4a587d542284d1f0dae84ca01e2cf09c 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 2.1E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2972 4a587d542284d1f0dae84ca01e2cf09c 261 Gene3D G3DSA:3.40.50.720 2 259 5.5E-58 T 12-10-2018 ALFP_2972 4a587d542284d1f0dae84ca01e2cf09c 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 253 2.1E-85 T 12-10-2018 ALFP_1705 1cf1d90ec79b63133cd702840b523769 213 Pfam PF13599 Pentapeptide repeats (9 copies) 14 89 3.4E-12 T 12-10-2018 IPR001646 Pentapeptide repeat ALFP_1705 1cf1d90ec79b63133cd702840b523769 213 Pfam PF13599 Pentapeptide repeats (9 copies) 114 187 1.4E-10 T 12-10-2018 IPR001646 Pentapeptide repeat ALFP_1705 1cf1d90ec79b63133cd702840b523769 213 Gene3D G3DSA:2.160.20.80 3 213 2.4E-37 T 12-10-2018 ALFP_1705 1cf1d90ec79b63133cd702840b523769 213 SUPERFAMILY SSF141571 63 211 4.19E-28 T 12-10-2018 ALFP_3001 dd3a9a501445bcda2ea7d52dde169987 188 Pfam PF05995 Cysteine dioxygenase type I 70 162 5.0E-7 T 12-10-2018 IPR010300 Cysteine dioxygenase type I GO:0005506|GO:0016702|GO:0055114 KEGG: 00270+1.13.11.20|KEGG: 00430+1.13.11.20|MetaCyc: PWY-5331|Reactome: R-HSA-1614558 ALFP_3001 dd3a9a501445bcda2ea7d52dde169987 188 Gene3D G3DSA:2.60.120.10 42 184 1.5E-55 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_3001 dd3a9a501445bcda2ea7d52dde169987 188 Gene3D G3DSA:1.20.5.440 3 41 2.5E-6 T 12-10-2018 ALFP_3001 dd3a9a501445bcda2ea7d52dde169987 188 SUPERFAMILY SSF51182 1 183 5.17E-53 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_3008 f822f7ac3bed140737389a32a12bd46c 249 Pfam PF09339 IclR helix-turn-helix domain 7 54 1.0E-15 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_3008 f822f7ac3bed140737389a32a12bd46c 249 SUPERFAMILY SSF55781 67 246 3.34E-51 T 12-10-2018 ALFP_3008 f822f7ac3bed140737389a32a12bd46c 249 Gene3D G3DSA:3.30.450.40 76 248 4.0E-59 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_3008 f822f7ac3bed140737389a32a12bd46c 249 SMART SM00346 2 92 1.0E-25 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_3008 f822f7ac3bed140737389a32a12bd46c 249 Pfam PF01614 Bacterial transcriptional regulator 120 242 1.9E-31 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal ALFP_3008 f822f7ac3bed140737389a32a12bd46c 249 Gene3D G3DSA:1.10.10.10 3 75 1.6E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3008 f822f7ac3bed140737389a32a12bd46c 249 SUPERFAMILY SSF46785 4 75 5.69E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0205 48dadd828cee4f90e45315b73311c18b 455 Pfam PF02646 RmuC family 125 419 3.6E-87 T 12-10-2018 IPR003798 DNA recombination RmuC ALFP_3295 ddcefd572370cd886ffbaacec18e4782 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 12-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 ALFP_3295 ddcefd572370cd886ffbaacec18e4782 513 PIRSF PIRSF039088 1 513 9.0E-237 T 12-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3295 ddcefd572370cd886ffbaacec18e4782 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 25 92 2.3E-16 T 12-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 ALFP_3295 ddcefd572370cd886ffbaacec18e4782 513 SUPERFAMILY SSF47917 383 510 3.66E-45 T 12-10-2018 ALFP_3295 ddcefd572370cd886ffbaacec18e4782 513 Gene3D G3DSA:2.40.30.20 1 93 1.2E-33 T 12-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 ALFP_3295 ddcefd572370cd886ffbaacec18e4782 513 Gene3D G3DSA:1.20.150.20 383 512 8.4E-46 T 12-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3295 ddcefd572370cd886ffbaacec18e4782 513 SUPERFAMILY SSF52540 96 381 2.45E-93 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3295 ddcefd572370cd886ffbaacec18e4782 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 3.2E-73 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 ALFP_3295 ddcefd572370cd886ffbaacec18e4782 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 1.0E-44 T 12-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3295 ddcefd572370cd886ffbaacec18e4782 513 SUPERFAMILY SSF50615 10 94 4.91E-28 T 12-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 ALFP_3295 ddcefd572370cd886ffbaacec18e4782 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 510 3.4E-247 T 12-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3295 ddcefd572370cd886ffbaacec18e4782 513 Gene3D G3DSA:3.40.50.300 94 382 3.4E-131 T 12-10-2018 ALFP_3295 ddcefd572370cd886ffbaacec18e4782 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 50.627 T 12-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_0130 ce85bb205a47affce4a4f53d9edb5a65 421 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 2 410 5.6E-116 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_0130 ce85bb205a47affce4a4f53d9edb5a65 421 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 13 414 7.2E-134 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_0130 ce85bb205a47affce4a4f53d9edb5a65 421 PIRSF PIRSF006066 1 421 2.6E-162 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_2125 6b03e81792f1532fecf691a6ea591bb4 473 Pfam PF06969 HemN C-terminal domain 382 448 4.0E-11 T 12-10-2018 IPR010723 HemN, C-terminal ALFP_2125 6b03e81792f1532fecf691a6ea591bb4 473 Gene3D G3DSA:1.10.10.920 381 473 3.0E-28 T 12-10-2018 ALFP_2125 6b03e81792f1532fecf691a6ea591bb4 473 Pfam PF04055 Radical SAM superfamily 74 243 5.7E-18 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 ALFP_2125 6b03e81792f1532fecf691a6ea591bb4 473 SUPERFAMILY SSF102114 21 461 2.62E-128 T 12-10-2018 ALFP_2125 6b03e81792f1532fecf691a6ea591bb4 473 SMART SM00729 68 289 4.2E-51 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 ALFP_2125 6b03e81792f1532fecf691a6ea591bb4 473 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 19 473 3.3E-174 T 12-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 ALFP_2125 6b03e81792f1532fecf691a6ea591bb4 473 PIRSF PIRSF000167 19 471 3.7E-163 T 12-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 ALFP_2125 6b03e81792f1532fecf691a6ea591bb4 473 Gene3D G3DSA:3.80.30.20 14 380 4.6E-118 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe ALFP_1888 53e391cbe79b436c446c46eb7f59d5d6 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 292 2.0E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_1888 53e391cbe79b436c446c46eb7f59d5d6 294 Gene3D G3DSA:1.10.3720.10 51 292 1.7E-57 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1888 53e391cbe79b436c446c46eb7f59d5d6 294 SUPERFAMILY SSF161098 55 282 7.06E-51 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0645 3f1591e99276f93e4169c0f74f4d1389 291 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 5 118 5.9E-24 T 12-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI ALFP_0645 3f1591e99276f93e4169c0f74f4d1389 291 SMART SM00028 226 259 1.2 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_0645 3f1591e99276f93e4169c0f74f4d1389 291 SMART SM00028 155 188 13.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_0645 3f1591e99276f93e4169c0f74f4d1389 291 Gene3D G3DSA:1.25.40.10 138 279 4.9E-20 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_0645 3f1591e99276f93e4169c0f74f4d1389 291 SUPERFAMILY SSF48452 141 262 1.47E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2535 f02f0f5dc24013d832bf866f91863ff5 240 PIRSF PIRSF005917 7 238 2.3E-44 T 12-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 ALFP_2535 f02f0f5dc24013d832bf866f91863ff5 240 Gene3D G3DSA:3.40.1010.10 4 124 3.6E-36 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 ALFP_2535 f02f0f5dc24013d832bf866f91863ff5 240 Gene3D G3DSA:3.30.950.10 125 239 2.5E-44 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 ALFP_2535 f02f0f5dc24013d832bf866f91863ff5 240 SUPERFAMILY SSF53790 7 236 3.01E-58 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 ALFP_2045 68ef59e25d4b62e5018f9a13e68e26ef 198 SUPERFAMILY SSF54211 5 122 4.55E-39 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_2045 68ef59e25d4b62e5018f9a13e68e26ef 198 Pfam PF01205 Uncharacterized protein family UPF0029 17 117 2.0E-28 T 12-10-2018 IPR001498 Impact, N-terminal ALFP_2045 68ef59e25d4b62e5018f9a13e68e26ef 198 Pfam PF09186 Domain of unknown function (DUF1949) 133 189 3.8E-12 T 12-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal ALFP_2045 68ef59e25d4b62e5018f9a13e68e26ef 198 Gene3D G3DSA:3.30.230.30 2 126 1.5E-46 T 12-10-2018 IPR036956 Impact, N-terminal domain superfamily ALFP_2045 68ef59e25d4b62e5018f9a13e68e26ef 198 SUPERFAMILY SSF54980 128 197 3.67E-12 T 12-10-2018 IPR035647 EF-G domain III/V-like ALFP_2889 6fca363f5ef4b65f88a9b5be5c4be55f 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 324 1.6E-87 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_2889 6fca363f5ef4b65f88a9b5be5c4be55f 328 Gene3D G3DSA:3.40.190.10 128 253 4.0E-108 T 12-10-2018 ALFP_2889 6fca363f5ef4b65f88a9b5be5c4be55f 328 PIRSF PIRSF017082 3 328 8.9E-84 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_2889 6fca363f5ef4b65f88a9b5be5c4be55f 328 SUPERFAMILY SSF53850 116 290 8.68E-8 T 12-10-2018 ALFP_2889 6fca363f5ef4b65f88a9b5be5c4be55f 328 Gene3D G3DSA:3.40.190.150 30 318 4.0E-108 T 12-10-2018 ALFP_1655 74d93d4d7fd49961f3415013586fedde 244 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 38 235 4.2E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_1655 74d93d4d7fd49961f3415013586fedde 244 Gene3D G3DSA:1.10.3720.10 4 239 1.2E-48 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1655 74d93d4d7fd49961f3415013586fedde 244 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 82 6.1E-18 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 ALFP_1655 74d93d4d7fd49961f3415013586fedde 244 SUPERFAMILY SSF161098 15 223 2.75E-40 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0313 2b75743d1799782d54ab9a267753c5dc 298 Gene3D G3DSA:1.10.10.10 1 87 2.4E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0313 2b75743d1799782d54ab9a267753c5dc 298 Pfam PF03466 LysR substrate binding domain 94 296 6.9E-31 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0313 2b75743d1799782d54ab9a267753c5dc 298 Gene3D G3DSA:3.40.190.10 171 269 1.2E-65 T 12-10-2018 ALFP_0313 2b75743d1799782d54ab9a267753c5dc 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 1.1E-13 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0313 2b75743d1799782d54ab9a267753c5dc 298 SUPERFAMILY SSF53850 90 297 2.31E-48 T 12-10-2018 ALFP_0313 2b75743d1799782d54ab9a267753c5dc 298 SUPERFAMILY SSF46785 5 86 2.25E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0313 2b75743d1799782d54ab9a267753c5dc 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 1.8E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0313 2b75743d1799782d54ab9a267753c5dc 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 1.8E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0313 2b75743d1799782d54ab9a267753c5dc 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 1.8E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0313 2b75743d1799782d54ab9a267753c5dc 298 Gene3D G3DSA:3.40.190.10 92 293 1.2E-65 T 12-10-2018 ALFP_1451 7b1ba15b36f6e3aabf57dda33c3d907f 211 Gene3D G3DSA:1.10.357.10 18 206 7.4E-46 T 12-10-2018 ALFP_1451 7b1ba15b36f6e3aabf57dda33c3d907f 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 69 1.5E-15 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1451 7b1ba15b36f6e3aabf57dda33c3d907f 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 9.3E-11 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1451 7b1ba15b36f6e3aabf57dda33c3d907f 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 9.3E-11 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1451 7b1ba15b36f6e3aabf57dda33c3d907f 211 SUPERFAMILY SSF46689 9 89 1.2E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2288 61a4016696d51a12e553d0bf635df9e6 263 TIGRFAM TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB 7 263 1.1E-126 T 12-10-2018 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB GO:0010124 KEGG: 00360+5.3.3.18 ALFP_2288 61a4016696d51a12e553d0bf635df9e6 263 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 262 8.9E-62 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 ALFP_2288 61a4016696d51a12e553d0bf635df9e6 263 SUPERFAMILY SSF52096 4 262 7.07E-81 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_2288 61a4016696d51a12e553d0bf635df9e6 263 Gene3D G3DSA:1.10.12.10 206 263 8.3E-23 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal ALFP_2288 61a4016696d51a12e553d0bf635df9e6 263 Gene3D G3DSA:3.90.226.10 1 205 5.1E-68 T 12-10-2018 ALFP_3582 a702a7836feaba1bfb46ed2bdedbe512 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 63 2.5E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_3582 a702a7836feaba1bfb46ed2bdedbe512 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 63 79 2.5E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_3582 a702a7836feaba1bfb46ed2bdedbe512 235 SUPERFAMILY SSF46785 24 93 2.07E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3582 a702a7836feaba1bfb46ed2bdedbe512 235 Pfam PF07729 FCD domain 100 220 6.5E-26 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_3582 a702a7836feaba1bfb46ed2bdedbe512 235 Pfam PF00392 Bacterial regulatory proteins, gntR family 31 89 1.3E-21 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_3582 a702a7836feaba1bfb46ed2bdedbe512 235 Gene3D G3DSA:1.10.10.10 23 90 2.8E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3582 a702a7836feaba1bfb46ed2bdedbe512 235 SUPERFAMILY SSF48008 99 228 1.36E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_3582 a702a7836feaba1bfb46ed2bdedbe512 235 SMART SM00345 31 89 1.3E-20 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_3582 a702a7836feaba1bfb46ed2bdedbe512 235 Gene3D G3DSA:1.20.120.530 96 230 7.5E-28 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_3582 a702a7836feaba1bfb46ed2bdedbe512 235 SMART SM00895 99 221 2.3E-21 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_2274 ba570c0ac51b5b79dfbe241ecf994738 219 Gene3D G3DSA:1.10.760.10 48 210 2.0E-69 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2274 ba570c0ac51b5b79dfbe241ecf994738 219 SUPERFAMILY SSF46626 22 202 4.12E-26 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2274 ba570c0ac51b5b79dfbe241ecf994738 219 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 12 187 1.2E-79 T 12-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO ALFP_2274 ba570c0ac51b5b79dfbe241ecf994738 219 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 11 189 1.1E-78 T 12-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO ALFP_1583 5ca563db8267fb68c67881cc27fc3261 411 Pfam PF07690 Major Facilitator Superfamily 23 363 1.5E-22 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_1583 5ca563db8267fb68c67881cc27fc3261 411 Gene3D G3DSA:1.20.1250.20 222 402 7.3E-10 T 12-10-2018 ALFP_1583 5ca563db8267fb68c67881cc27fc3261 411 Gene3D G3DSA:1.20.1250.20 4 199 2.8E-7 T 12-10-2018 ALFP_1583 5ca563db8267fb68c67881cc27fc3261 411 SUPERFAMILY SSF103473 3 397 3.27E-25 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2474 d09f33e77f0a6ad261f22361a3b1760d 80 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 3 69 22.804 T 12-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_2474 d09f33e77f0a6ad261f22361a3b1760d 80 Pfam PF00830 Ribosomal L28 family 5 64 1.8E-30 T 12-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2474 d09f33e77f0a6ad261f22361a3b1760d 80 SUPERFAMILY SSF143800 2 79 1.47E-33 T 12-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2474 d09f33e77f0a6ad261f22361a3b1760d 80 TIGRFAM TIGR00009 L28: ribosomal protein bL28 3 60 1.0E-30 T 12-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_2474 d09f33e77f0a6ad261f22361a3b1760d 80 Gene3D G3DSA:2.30.170.40 4 80 1.1E-35 T 12-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3002 90fc361ad5514ed56fbde97fbd6c825e 250 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 247 3.0E-49 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 ALFP_3002 90fc361ad5514ed56fbde97fbd6c825e 250 SUPERFAMILY SSF52096 2 247 2.09E-66 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_3002 90fc361ad5514ed56fbde97fbd6c825e 250 Gene3D G3DSA:3.90.226.10 2 191 2.2E-51 T 12-10-2018 ALFP_3002 90fc361ad5514ed56fbde97fbd6c825e 250 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 92 112 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 ALFP_3002 90fc361ad5514ed56fbde97fbd6c825e 250 Gene3D G3DSA:1.10.12.10 193 250 2.5E-9 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal ALFP_3678 3748d3a6e17cfbe5276c899564f174ee 215 Pfam PF01810 LysE type translocator 17 203 7.5E-24 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 ALFP_0879 4aeba9b4d53f9605620f953cc6328ce5 203 Pfam PF13662 Toprim domain 87 176 4.3E-23 T 12-10-2018 IPR006171 TOPRIM domain ALFP_0879 4aeba9b4d53f9605620f953cc6328ce5 203 Gene3D G3DSA:3.40.1360.10 82 203 1.5E-40 T 12-10-2018 ALFP_0879 4aeba9b4d53f9605620f953cc6328ce5 203 SMART SM00493 85 170 2.9E-6 T 12-10-2018 IPR006171 TOPRIM domain ALFP_0879 4aeba9b4d53f9605620f953cc6328ce5 203 Pfam PF02132 RecR protein 45 83 4.3E-12 T 12-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger ALFP_0879 4aeba9b4d53f9605620f953cc6328ce5 203 TIGRFAM TIGR00615 recR: recombination protein RecR 9 201 4.1E-65 T 12-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 ALFP_0879 4aeba9b4d53f9605620f953cc6328ce5 203 Hamap MF_00017 Recombination protein RecR [recR]. 1 203 88.359 T 12-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 ALFP_0879 4aeba9b4d53f9605620f953cc6328ce5 203 Gene3D G3DSA:1.10.8.420 7 57 2.9E-16 T 12-10-2018 ALFP_0879 4aeba9b4d53f9605620f953cc6328ce5 203 SUPERFAMILY SSF111304 9 201 2.48E-68 T 12-10-2018 IPR023627 Recombination protein RecR ALFP_3399 cfd38f8e221786035aa26882c50e4b5d 177 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 27 150 2.1E-36 T 12-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN ALFP_3399 cfd38f8e221786035aa26882c50e4b5d 177 Gene3D G3DSA:2.60.40.4150 34 177 6.8E-46 T 12-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily ALFP_3399 cfd38f8e221786035aa26882c50e4b5d 177 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 20 170 4.0E-38 T 12-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN ALFP_2259 57478a925464556726816a294a07e87a 337 SUPERFAMILY SSF161098 92 320 2.22E-21 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2259 57478a925464556726816a294a07e87a 337 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 335 3.0E-39 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_1342 1eb3421ad26000a531492c84dfdc1fe8 178 Gene3D G3DSA:3.10.450.50 2 176 2.1E-43 T 12-10-2018 ALFP_1342 1eb3421ad26000a531492c84dfdc1fe8 178 SUPERFAMILY SSF54427 20 177 4.44E-42 T 12-10-2018 IPR032710 NTF2-like domain superfamily ALFP_1342 1eb3421ad26000a531492c84dfdc1fe8 178 Pfam PF00866 Ring hydroxylating beta subunit 33 165 2.7E-25 T 12-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 ALFP_0009 f310c75126cd526aa53734dc4cc25917 276 Pfam PF07859 alpha/beta hydrolase fold 67 148 7.5E-7 T 12-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 ALFP_0009 f310c75126cd526aa53734dc4cc25917 276 SUPERFAMILY SSF53474 5 256 1.08E-37 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0009 f310c75126cd526aa53734dc4cc25917 276 Gene3D G3DSA:3.40.50.1820 24 272 1.1E-51 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0047 05b42757e485d30fcdc9c8b135324307 322 Gene3D G3DSA:3.40.190.10 123 246 4.2E-91 T 12-10-2018 ALFP_0047 05b42757e485d30fcdc9c8b135324307 322 Gene3D G3DSA:3.40.190.150 28 311 4.2E-91 T 12-10-2018 ALFP_0047 05b42757e485d30fcdc9c8b135324307 322 SUPERFAMILY SSF53850 108 279 3.8E-9 T 12-10-2018 ALFP_0047 05b42757e485d30fcdc9c8b135324307 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 317 7.9E-68 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0047 05b42757e485d30fcdc9c8b135324307 322 PIRSF PIRSF017082 1 320 9.4E-70 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_2704 abbd4f7329e76c00e73725da7f9d9d45 265 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 87 261 5.6E-18 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 ALFP_2704 abbd4f7329e76c00e73725da7f9d9d45 265 SUPERFAMILY SSF56529 8 262 6.93E-80 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 ALFP_2704 abbd4f7329e76c00e73725da7f9d9d45 265 Gene3D G3DSA:3.90.850.10 5 264 4.8E-89 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 ALFP_1187 37bef84c27eca987c2f927f83ce73bd2 578 SMART SM00304 241 293 9.4E-14 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 ALFP_1187 37bef84c27eca987c2f927f83ce73bd2 578 Pfam PF02203 Tar ligand binding domain homologue 7 201 5.6E-17 T 12-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 ALFP_1187 37bef84c27eca987c2f927f83ce73bd2 578 Pfam PF00672 HAMP domain 241 289 3.6E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 ALFP_1187 37bef84c27eca987c2f927f83ce73bd2 578 Gene3D G3DSA:1.10.287.950 241 543 6.8E-91 T 12-10-2018 ALFP_1187 37bef84c27eca987c2f927f83ce73bd2 578 SUPERFAMILY SSF47170 34 188 6.41E-5 T 12-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily ALFP_1187 37bef84c27eca987c2f927f83ce73bd2 578 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 469 498 2.5E-64 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1187 37bef84c27eca987c2f927f83ce73bd2 578 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 421 450 2.5E-64 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1187 37bef84c27eca987c2f927f83ce73bd2 578 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 65 80 2.5E-64 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1187 37bef84c27eca987c2f927f83ce73bd2 578 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 392 419 2.5E-64 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1187 37bef84c27eca987c2f927f83ce73bd2 578 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 10 35 2.5E-64 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1187 37bef84c27eca987c2f927f83ce73bd2 578 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 315 344 2.5E-64 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1187 37bef84c27eca987c2f927f83ce73bd2 578 SUPERFAMILY SSF58104 261 546 3.79E-75 T 12-10-2018 ALFP_1187 37bef84c27eca987c2f927f83ce73bd2 578 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 353 508 6.2E-53 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 ALFP_1187 37bef84c27eca987c2f927f83ce73bd2 578 SMART SM00283 294 541 3.9E-87 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 ALFP_2254 efc157425f822c803d6dfdd040f3ad50 189 Gene3D G3DSA:2.30.110.10 1 188 1.0E-57 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 ALFP_2254 efc157425f822c803d6dfdd040f3ad50 189 SMART SM00903 12 166 1.8E-14 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 ALFP_2254 efc157425f822c803d6dfdd040f3ad50 189 Pfam PF01613 Flavin reductase like domain 15 176 6.6E-21 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 ALFP_2254 efc157425f822c803d6dfdd040f3ad50 189 SUPERFAMILY SSF50475 4 186 4.32E-41 T 12-10-2018 ALFP_2291 b5492e837a793bd41c50cec3df393243 170 Gene3D G3DSA:3.30.300.130 5 104 9.4E-27 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily ALFP_2291 b5492e837a793bd41c50cec3df393243 170 Pfam PF01883 Iron-sulfur cluster assembly protein 12 75 7.4E-15 T 12-10-2018 IPR002744 MIP18 family-like ALFP_2291 b5492e837a793bd41c50cec3df393243 170 SUPERFAMILY SSF117916 8 104 1.67E-26 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily ALFP_2291 b5492e837a793bd41c50cec3df393243 170 TIGRFAM TIGR02159 PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit 21 169 4.0E-60 T 12-10-2018 IPR011883 Phenylacetate-CoA oxygenase, PaaJ subunit ALFP_1384 4c47a89cd1817bb6cdde5d445c3e851a 444 TIGRFAM TIGR00032 argG: argininosuccinate synthase 13 419 8.0E-161 T 12-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 ALFP_1384 4c47a89cd1817bb6cdde5d445c3e851a 444 Gene3D G3DSA:3.90.1260.10 74 367 2.5E-118 T 12-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 ALFP_1384 4c47a89cd1817bb6cdde5d445c3e851a 444 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 129 140 - T 12-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 ALFP_1384 4c47a89cd1817bb6cdde5d445c3e851a 444 SUPERFAMILY SSF69864 190 442 1.16E-80 T 12-10-2018 ALFP_1384 4c47a89cd1817bb6cdde5d445c3e851a 444 Gene3D G3DSA:3.40.50.620 14 191 2.5E-118 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_1384 4c47a89cd1817bb6cdde5d445c3e851a 444 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 17 25 - T 12-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 ALFP_1384 4c47a89cd1817bb6cdde5d445c3e851a 444 SUPERFAMILY SSF52402 5 185 1.75E-33 T 12-10-2018 ALFP_1384 4c47a89cd1817bb6cdde5d445c3e851a 444 Pfam PF00764 Arginosuccinate synthase 16 410 2.9E-60 T 12-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 ALFP_1384 4c47a89cd1817bb6cdde5d445c3e851a 444 Hamap MF_00581 Argininosuccinate synthase [argG]. 1 443 70.369 T 12-10-2018 IPR023437 Argininosuccinate synthase, type 2 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 ALFP_1384 4c47a89cd1817bb6cdde5d445c3e851a 444 Gene3D G3DSA:1.10.287.400 377 440 1.3E-30 T 12-10-2018 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail GO:0042803 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 ALFP_3024 fa18b8105e4a092cd59abbdc382d0009 147 Gene3D G3DSA:1.10.10.10 37 133 7.8E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3024 fa18b8105e4a092cd59abbdc382d0009 147 Pfam PF12840 Helix-turn-helix domain 50 109 7.3E-15 T 12-10-2018 ALFP_3024 fa18b8105e4a092cd59abbdc382d0009 147 SMART SM00418 48 129 6.1E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_3024 fa18b8105e4a092cd59abbdc382d0009 147 SUPERFAMILY SSF46785 38 134 2.82E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3024 fa18b8105e4a092cd59abbdc382d0009 147 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 50 65 2.9E-5 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_3024 fa18b8105e4a092cd59abbdc382d0009 147 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 100 115 2.9E-5 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_3024 fa18b8105e4a092cd59abbdc382d0009 147 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 85 100 2.9E-5 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ALFP_1616 cc011ab754b8c790adfb2ebad91dd394 203 Gene3D G3DSA:1.10.287.990 20 89 6.7E-28 T 12-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1616 cc011ab754b8c790adfb2ebad91dd394 203 Gene3D G3DSA:2.40.500.20 91 203 1.8E-44 T 12-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1616 cc011ab754b8c790adfb2ebad91dd394 203 SUPERFAMILY SSF46609 2 90 3.01E-33 T 12-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1616 cc011ab754b8c790adfb2ebad91dd394 203 PIRSF PIRSF000349 1 203 1.1E-76 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1616 cc011ab754b8c790adfb2ebad91dd394 203 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 164 171 - T 12-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1616 cc011ab754b8c790adfb2ebad91dd394 203 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 6.4E-27 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1616 cc011ab754b8c790adfb2ebad91dd394 203 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 6.4E-27 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1616 cc011ab754b8c790adfb2ebad91dd394 203 PRINTS PR01703 Manganese superoxide dismutase signature 72 85 6.4E-27 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1616 cc011ab754b8c790adfb2ebad91dd394 203 PRINTS PR01703 Manganese superoxide dismutase signature 162 174 6.4E-27 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1616 cc011ab754b8c790adfb2ebad91dd394 203 PRINTS PR01703 Manganese superoxide dismutase signature 125 133 6.4E-27 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1616 cc011ab754b8c790adfb2ebad91dd394 203 SUPERFAMILY SSF54719 88 201 6.02E-43 T 12-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1616 cc011ab754b8c790adfb2ebad91dd394 203 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 98 196 2.5E-38 T 12-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_1616 cc011ab754b8c790adfb2ebad91dd394 203 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 88 1.0E-30 T 12-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 ALFP_2067 a7b10ee77dc1a8e06360a15e61ffdc6a 467 Pfam PF00330 Aconitase family (aconitate hydratase) 7 458 1.1E-159 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_2067 a7b10ee77dc1a8e06360a15e61ffdc6a 467 Gene3D G3DSA:3.30.499.10 327 467 5.0E-50 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 ALFP_2067 a7b10ee77dc1a8e06360a15e61ffdc6a 467 Gene3D G3DSA:3.30.499.20 4 286 1.7E-100 T 12-10-2018 ALFP_2067 a7b10ee77dc1a8e06360a15e61ffdc6a 467 ProSitePatterns PS00450 Aconitase family signature 1. 339 355 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 ALFP_2067 a7b10ee77dc1a8e06360a15e61ffdc6a 467 SUPERFAMILY SSF53732 2 466 2.62E-168 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 ALFP_2067 a7b10ee77dc1a8e06360a15e61ffdc6a 467 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 1 467 60.951 T 12-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 ALFP_2067 a7b10ee77dc1a8e06360a15e61ffdc6a 467 PRINTS PR00415 Aconitase family signature 286 300 3.9E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_2067 a7b10ee77dc1a8e06360a15e61ffdc6a 467 PRINTS PR00415 Aconitase family signature 82 95 3.9E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_2067 a7b10ee77dc1a8e06360a15e61ffdc6a 467 PRINTS PR00415 Aconitase family signature 133 148 3.9E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_2067 a7b10ee77dc1a8e06360a15e61ffdc6a 467 PRINTS PR00415 Aconitase family signature 209 222 3.9E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_2067 a7b10ee77dc1a8e06360a15e61ffdc6a 467 PRINTS PR00415 Aconitase family signature 400 413 3.9E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_2067 a7b10ee77dc1a8e06360a15e61ffdc6a 467 PRINTS PR00415 Aconitase family signature 119 132 3.9E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_2067 a7b10ee77dc1a8e06360a15e61ffdc6a 467 PRINTS PR00415 Aconitase family signature 108 116 3.9E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_2067 a7b10ee77dc1a8e06360a15e61ffdc6a 467 PRINTS PR00415 Aconitase family signature 195 208 3.9E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_2067 a7b10ee77dc1a8e06360a15e61ffdc6a 467 PRINTS PR00415 Aconitase family signature 343 354 3.9E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 ALFP_2067 a7b10ee77dc1a8e06360a15e61ffdc6a 467 ProSitePatterns PS01244 Aconitase family signature 2. 400 413 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 ALFP_2067 a7b10ee77dc1a8e06360a15e61ffdc6a 467 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 1 466 2.9E-241 T 12-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 ALFP_2818 1e1abec2854439bf75b57796493232d1 479 SUPERFAMILY SSF48173 204 474 4.84E-103 T 12-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 ALFP_2818 1e1abec2854439bf75b57796493232d1 479 SUPERFAMILY SSF52425 11 178 1.83E-55 T 12-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 ALFP_2818 1e1abec2854439bf75b57796493232d1 479 PRINTS PR00147 DNA photolyase signature 149 165 2.9E-30 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 ALFP_2818 1e1abec2854439bf75b57796493232d1 479 PRINTS PR00147 DNA photolyase signature 382 396 2.9E-30 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 ALFP_2818 1e1abec2854439bf75b57796493232d1 479 PRINTS PR00147 DNA photolyase signature 323 339 2.9E-30 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 ALFP_2818 1e1abec2854439bf75b57796493232d1 479 PRINTS PR00147 DNA photolyase signature 343 361 2.9E-30 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 ALFP_2818 1e1abec2854439bf75b57796493232d1 479 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 343 362 - T 12-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal ALFP_2818 1e1abec2854439bf75b57796493232d1 479 Gene3D G3DSA:1.10.579.10 292 475 1.5E-77 T 12-10-2018 ALFP_2818 1e1abec2854439bf75b57796493232d1 479 Gene3D G3DSA:1.25.40.80 138 287 6.3E-74 T 12-10-2018 ALFP_2818 1e1abec2854439bf75b57796493232d1 479 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 323 335 - T 12-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal ALFP_2818 1e1abec2854439bf75b57796493232d1 479 Pfam PF00875 DNA photolyase 13 171 1.8E-50 T 12-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 ALFP_2818 1e1abec2854439bf75b57796493232d1 479 Gene3D G3DSA:3.40.50.620 14 211 6.3E-74 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_2818 1e1abec2854439bf75b57796493232d1 479 Pfam PF03441 FAD binding domain of DNA photolyase 274 470 1.0E-85 T 12-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 ALFP_3396 78986809060df5aab196e76b09b031fa 1199 Pfam PF06761 Intracellular multiplication and human macrophage-killing 517 826 3.5E-76 T 12-10-2018 IPR009612 ImcF-related ALFP_3396 78986809060df5aab196e76b09b031fa 1199 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 14 1197 0.0 T 12-10-2018 IPR017731 Type VI secretion system, IcmF ALFP_3396 78986809060df5aab196e76b09b031fa 1199 Pfam PF14331 ImcF-related N-terminal domain 206 464 7.5E-90 T 12-10-2018 IPR025743 ImcF-related, N-terminal domain ALFP_3396 78986809060df5aab196e76b09b031fa 1199 SUPERFAMILY SSF52540 125 302 3.43E-11 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3396 78986809060df5aab196e76b09b031fa 1199 Gene3D G3DSA:3.40.50.300 138 352 4.7E-6 T 12-10-2018 ALFP_3396 78986809060df5aab196e76b09b031fa 1199 Pfam PF06744 Type VI secretion protein IcmF C-terminal 952 1147 1.3E-57 T 12-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal ALFP_0403 bf1beacfd41aec9d0a68da86a18d16b4 177 PIRSF PIRSF039093 1 177 2.2E-85 T 12-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 ALFP_0403 bf1beacfd41aec9d0a68da86a18d16b4 177 Pfam PF00227 Proteasome subunit 5 175 4.6E-22 T 12-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 ALFP_0403 bf1beacfd41aec9d0a68da86a18d16b4 177 SUPERFAMILY SSF56235 3 177 1.4E-58 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal ALFP_0403 bf1beacfd41aec9d0a68da86a18d16b4 177 Gene3D G3DSA:3.60.20.10 2 177 3.6E-66 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal ALFP_0403 bf1beacfd41aec9d0a68da86a18d16b4 177 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 6 177 40.909 T 12-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 ALFP_0403 bf1beacfd41aec9d0a68da86a18d16b4 177 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 7 177 2.4E-84 T 12-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 ALFP_0573 0ef93c9907e696911183380a107a33e8 1382 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 1033 1378 6.1E-38 T 12-10-2018 IPR007452 Translocation and assembly module TamB ALFP_3547 248d792dc8ce8d9c1496d7ffa0b3ff69 184 Pfam PF13302 Acetyltransferase (GNAT) domain 7 147 5.1E-26 T 12-10-2018 IPR000182 GNAT domain ALFP_3547 248d792dc8ce8d9c1496d7ffa0b3ff69 184 Gene3D G3DSA:3.40.630.30 1 176 3.5E-39 T 12-10-2018 ALFP_3547 248d792dc8ce8d9c1496d7ffa0b3ff69 184 SUPERFAMILY SSF55729 2 156 4.01E-35 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_0672 6b434e3e4d6c93307a8754d434262a01 368 SUPERFAMILY SSF46785 28 140 1.27E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0672 6b434e3e4d6c93307a8754d434262a01 368 Gene3D G3DSA:1.10.10.10 3 125 3.6E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0672 6b434e3e4d6c93307a8754d434262a01 368 Pfam PF12727 PBP superfamily domain 141 329 9.4E-45 T 12-10-2018 IPR024370 PBP domain ALFP_0672 6b434e3e4d6c93307a8754d434262a01 368 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 30 87 8.3E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0672 6b434e3e4d6c93307a8754d434262a01 368 Gene3D G3DSA:3.40.190.10 208 243 2.6E-7 T 12-10-2018 ALFP_0672 6b434e3e4d6c93307a8754d434262a01 368 SUPERFAMILY SSF53850 202 346 7.03E-13 T 12-10-2018 ALFP_3730 81533bb68baa9d3bfe5f93d161aca35b 80 Pfam PF01809 Haemolytic domain 4 69 3.9E-28 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor ALFP_3730 81533bb68baa9d3bfe5f93d161aca35b 80 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 17 69 3.0E-15 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor ALFP_3730 81533bb68baa9d3bfe5f93d161aca35b 80 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 10 76 1.9E-27 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor ALFP_3730 81533bb68baa9d3bfe5f93d161aca35b 80 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 2 70 23.37 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor ALFP_3730 81533bb68baa9d3bfe5f93d161aca35b 80 SMART SM01234 2 69 1.9E-41 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor ALFP_2538 65407f89efa67e5e506a39b530919766 319 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 9 319 54.401 T 12-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 ALFP_2538 65407f89efa67e5e506a39b530919766 319 Pfam PF00174 Oxidoreductase molybdopterin binding domain 98 254 8.2E-33 T 12-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 ALFP_2538 65407f89efa67e5e506a39b530919766 319 SUPERFAMILY SSF56524 67 315 1.12E-92 T 12-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 ALFP_2538 65407f89efa67e5e506a39b530919766 319 Gene3D G3DSA:3.90.420.10 55 319 1.2E-109 T 12-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 ALFP_0835 ad6f6d962150b65886970221a17d7492 388 Pfam PF07690 Major Facilitator Superfamily 19 335 8.2E-28 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_0835 ad6f6d962150b65886970221a17d7492 388 Gene3D G3DSA:1.20.1250.20 4 383 7.8E-37 T 12-10-2018 ALFP_0835 ad6f6d962150b65886970221a17d7492 388 SUPERFAMILY SSF103473 4 382 1.44E-49 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_0676 b164cb56974e65875423f79ab83a3962 176 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 13 154 4.9E-27 T 12-10-2018 IPR001453 MoaB/Mog domain ALFP_0676 b164cb56974e65875423f79ab83a3962 176 Gene3D G3DSA:3.40.980.10 4 172 4.2E-43 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily ALFP_0676 b164cb56974e65875423f79ab83a3962 176 SUPERFAMILY SSF53218 11 169 6.15E-37 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily ALFP_0676 b164cb56974e65875423f79ab83a3962 176 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 11 168 2.5E-67 T 12-10-2018 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 ALFP_0676 b164cb56974e65875423f79ab83a3962 176 PIRSF PIRSF006443 1 168 2.0E-53 T 12-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 ALFP_0676 b164cb56974e65875423f79ab83a3962 176 Pfam PF00994 Probable molybdopterin binding domain 16 157 2.9E-23 T 12-10-2018 IPR001453 MoaB/Mog domain ALFP_0676 b164cb56974e65875423f79ab83a3962 176 SMART SM00852 16 160 5.5E-16 T 12-10-2018 IPR001453 MoaB/Mog domain ALFP_2217 aed211137344636aa97fa0fe0775717f 385 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 16 367 30.58 T 12-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 ALFP_2217 aed211137344636aa97fa0fe0775717f 385 Gene3D G3DSA:3.30.930.10 3 328 2.2E-57 T 12-10-2018 ALFP_2217 aed211137344636aa97fa0fe0775717f 385 Pfam PF13393 Histidyl-tRNA synthetase 10 316 4.2E-103 T 12-10-2018 ALFP_2217 aed211137344636aa97fa0fe0775717f 385 SUPERFAMILY SSF55681 4 319 7.46E-50 T 12-10-2018 ALFP_2217 aed211137344636aa97fa0fe0775717f 385 PIRSF PIRSF001549 3 356 1.6E-33 T 12-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 ALFP_0913 5457bbd83f39f30bba1c5ae40cff71f8 241 Gene3D G3DSA:3.40.190.10 103 194 2.1E-27 T 12-10-2018 ALFP_0913 5457bbd83f39f30bba1c5ae40cff71f8 241 SUPERFAMILY SSF53850 17 228 4.93E-31 T 12-10-2018 ALFP_0913 5457bbd83f39f30bba1c5ae40cff71f8 241 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 17 228 1.9E-23 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_0913 5457bbd83f39f30bba1c5ae40cff71f8 241 Gene3D G3DSA:3.40.190.10 14 229 2.1E-27 T 12-10-2018 ALFP_0913 5457bbd83f39f30bba1c5ae40cff71f8 241 SMART SM00062 16 232 4.2E-19 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_3546 a22178c45db5ac5dbec56abcec71fc7e 286 Pfam PF12833 Helix-turn-helix domain 197 275 1.6E-15 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_3546 a22178c45db5ac5dbec56abcec71fc7e 286 SUPERFAMILY SSF51215 32 159 1.18E-7 T 12-10-2018 IPR037923 Transcription regulator HTH-like ALFP_3546 a22178c45db5ac5dbec56abcec71fc7e 286 Gene3D G3DSA:1.10.10.60 171 284 5.5E-19 T 12-10-2018 ALFP_3546 a22178c45db5ac5dbec56abcec71fc7e 286 SMART SM00342 191 274 9.8E-16 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_3546 a22178c45db5ac5dbec56abcec71fc7e 286 SUPERFAMILY SSF46689 233 276 1.66E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0327 2973d9c9b4222d12c3a1e7b38c9a4b44 145 Pfam PF13673 Acetyltransferase (GNAT) domain 52 128 8.7E-13 T 12-10-2018 IPR000182 GNAT domain ALFP_0327 2973d9c9b4222d12c3a1e7b38c9a4b44 145 Gene3D G3DSA:3.40.630.30 1 145 8.2E-38 T 12-10-2018 ALFP_0327 2973d9c9b4222d12c3a1e7b38c9a4b44 145 SUPERFAMILY SSF55729 1 142 1.2E-24 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_1386 244fcadd17724a5b25dccfabe12b65ec 359 SMART SM00382 33 225 1.5E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1386 244fcadd17724a5b25dccfabe12b65ec 359 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1386 244fcadd17724a5b25dccfabe12b65ec 359 Gene3D G3DSA:3.40.50.300 8 270 9.8E-72 T 12-10-2018 ALFP_1386 244fcadd17724a5b25dccfabe12b65ec 359 Pfam PF08402 TOBE domain 278 343 8.3E-7 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 ALFP_1386 244fcadd17724a5b25dccfabe12b65ec 359 Pfam PF00005 ABC transporter 25 167 1.7E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1386 244fcadd17724a5b25dccfabe12b65ec 359 SUPERFAMILY SSF52540 8 247 6.41E-79 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1386 244fcadd17724a5b25dccfabe12b65ec 359 SUPERFAMILY SSF50331 251 345 4.19E-10 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal ALFP_2992 a638af0983d0cd1391b537f33a703704 172 Pfam PF13628 Domain of unknown function (DUF4142) 27 162 9.6E-43 T 12-10-2018 IPR025419 Domain of unknown function DUF4142 ALFP_2992 a638af0983d0cd1391b537f33a703704 172 Gene3D G3DSA:1.20.1260.10 17 158 4.1E-6 T 12-10-2018 IPR012347 Ferritin-like ALFP_1643 d6970fe7f3ba031d7a965df2f2889097 162 Gene3D G3DSA:3.40.50.850 1 162 1.9E-34 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_1643 d6970fe7f3ba031d7a965df2f2889097 162 Pfam PF00857 Isochorismatase family 4 159 7.2E-33 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 ALFP_1643 d6970fe7f3ba031d7a965df2f2889097 162 SUPERFAMILY SSF52499 2 160 4.32E-37 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_2933 3e04eb3d67e7d15398922be1296b935d 1202 SUPERFAMILY SSF52540 432 682 7.02E-11 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2933 3e04eb3d67e7d15398922be1296b935d 1202 Pfam PF13191 AAA ATPase domain 435 619 9.8E-16 T 12-10-2018 ALFP_2933 3e04eb3d67e7d15398922be1296b935d 1202 Pfam PF03704 Bacterial transcriptional activator domain 129 243 1.8E-15 T 12-10-2018 IPR005158 Bacterial transcriptional activator domain ALFP_2933 3e04eb3d67e7d15398922be1296b935d 1202 Gene3D G3DSA:1.25.40.10 119 263 3.6E-19 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2933 3e04eb3d67e7d15398922be1296b935d 1202 SMART SM01043 109 246 6.2E-17 T 12-10-2018 IPR005158 Bacterial transcriptional activator domain ALFP_2933 3e04eb3d67e7d15398922be1296b935d 1202 SUPERFAMILY SSF48452 71 249 5.06E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2933 3e04eb3d67e7d15398922be1296b935d 1202 Gene3D G3DSA:3.40.50.300 436 633 1.1E-5 T 12-10-2018 ALFP_2933 3e04eb3d67e7d15398922be1296b935d 1202 SUPERFAMILY SSF48452 1113 1183 4.09E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2933 3e04eb3d67e7d15398922be1296b935d 1202 SUPERFAMILY SSF48452 907 1092 2.97E-7 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2933 3e04eb3d67e7d15398922be1296b935d 1202 Gene3D G3DSA:1.25.40.10 897 1200 1.2E-17 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2933 3e04eb3d67e7d15398922be1296b935d 1202 SUPERFAMILY SSF46894 14 90 4.54E-8 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ALFP_2933 3e04eb3d67e7d15398922be1296b935d 1202 Gene3D G3DSA:1.10.10.10 6 103 5.0E-11 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3623 38abbe0e039bd98500f197b5e7abaa60 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 9.0E-35 T 12-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3623 38abbe0e039bd98500f197b5e7abaa60 117 SUPERFAMILY SSF53137 3 115 3.05E-50 T 12-10-2018 ALFP_3623 38abbe0e039bd98500f197b5e7abaa60 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 2.6E-36 T 12-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3623 38abbe0e039bd98500f197b5e7abaa60 117 Gene3D G3DSA:3.30.420.100 1 117 1.3E-42 T 12-10-2018 ALFP_3623 38abbe0e039bd98500f197b5e7abaa60 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 25.487 T 12-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_0533 0d14dd8dea5e367c26e220d365846938 180 Gene3D G3DSA:1.20.1290.10 13 178 1.3E-43 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 ALFP_0533 0d14dd8dea5e367c26e220d365846938 180 Pfam PF02627 Carboxymuconolactone decarboxylase family 52 120 1.1E-7 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 ALFP_0533 0d14dd8dea5e367c26e220d365846938 180 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 59 104 7.6E-10 T 12-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 ALFP_0533 0d14dd8dea5e367c26e220d365846938 180 SUPERFAMILY SSF69118 1 174 6.87E-47 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 ALFP_1227 f703e183ffd1b54b0e855e6aeb7a27dc 246 PRINTS PR01003 Flagellar assembly protein FliH signature 68 90 1.5E-14 T 12-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 ALFP_1227 f703e183ffd1b54b0e855e6aeb7a27dc 246 PRINTS PR01003 Flagellar assembly protein FliH signature 199 215 1.5E-14 T 12-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 ALFP_1227 f703e183ffd1b54b0e855e6aeb7a27dc 246 PRINTS PR01003 Flagellar assembly protein FliH signature 216 241 1.5E-14 T 12-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 ALFP_1227 f703e183ffd1b54b0e855e6aeb7a27dc 246 PRINTS PR01003 Flagellar assembly protein FliH signature 130 147 1.5E-14 T 12-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 ALFP_1227 f703e183ffd1b54b0e855e6aeb7a27dc 246 PRINTS PR01003 Flagellar assembly protein FliH signature 148 170 1.5E-14 T 12-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 ALFP_1227 f703e183ffd1b54b0e855e6aeb7a27dc 246 PRINTS PR01003 Flagellar assembly protein FliH signature 171 198 1.5E-14 T 12-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 ALFP_1227 f703e183ffd1b54b0e855e6aeb7a27dc 246 PRINTS PR01003 Flagellar assembly protein FliH signature 91 109 1.5E-14 T 12-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 ALFP_1227 f703e183ffd1b54b0e855e6aeb7a27dc 246 Pfam PF02108 Flagellar assembly protein FliH 109 233 1.1E-32 T 12-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE ALFP_3390 5fc82c1a04de8db7b0c191cad5a207f8 496 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 16 475 2.1E-112 T 12-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 ALFP_3390 5fc82c1a04de8db7b0c191cad5a207f8 496 Pfam PF00860 Permease family 20 179 5.0E-33 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 ALFP_3390 5fc82c1a04de8db7b0c191cad5a207f8 496 Pfam PF00860 Permease family 213 443 8.0E-66 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 ALFP_0876 a5640d6a862af02f325ee4f568843952 1100 Gene3D G3DSA:3.40.50.300 7 198 1.1E-24 T 12-10-2018 ALFP_0876 a5640d6a862af02f325ee4f568843952 1100 Pfam PF13361 UvrD-like helicase C-terminal domain 468 659 8.9E-10 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 ALFP_0876 a5640d6a862af02f325ee4f568843952 1100 SUPERFAMILY SSF52980 922 1087 3.43E-9 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 ALFP_0876 a5640d6a862af02f325ee4f568843952 1100 Pfam PF00580 UvrD/REP helicase N-terminal domain 20 453 3.7E-45 T 12-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 ALFP_0876 a5640d6a862af02f325ee4f568843952 1100 Pfam PF12705 PD-(D/E)XK nuclease superfamily 936 1091 2.5E-8 T 12-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type ALFP_0876 a5640d6a862af02f325ee4f568843952 1100 Pfam PF13361 UvrD-like helicase C-terminal domain 755 848 8.2E-15 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 ALFP_0876 a5640d6a862af02f325ee4f568843952 1100 Gene3D G3DSA:3.40.50.300 346 489 5.1E-29 T 12-10-2018 ALFP_0876 a5640d6a862af02f325ee4f568843952 1100 Gene3D G3DSA:3.40.50.300 544 638 2.7E-14 T 12-10-2018 ALFP_0876 a5640d6a862af02f325ee4f568843952 1100 Gene3D G3DSA:3.90.320.10 889 1096 1.7E-8 T 12-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal ALFP_0876 a5640d6a862af02f325ee4f568843952 1100 SUPERFAMILY SSF52540 20 860 5.78E-90 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2447 59502261f5754d9cd6307314d2d3cbf0 205 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 4 197 29.613 T 12-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 ALFP_2447 59502261f5754d9cd6307314d2d3cbf0 205 SUPERFAMILY SSF52374 3 196 1.24E-48 T 12-10-2018 ALFP_2447 59502261f5754d9cd6307314d2d3cbf0 205 Gene3D G3DSA:3.40.50.620 2 196 1.3E-60 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_2447 59502261f5754d9cd6307314d2d3cbf0 205 Pfam PF01467 Cytidylyltransferase-like 8 171 4.0E-28 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 ALFP_2447 59502261f5754d9cd6307314d2d3cbf0 205 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 8 196 4.8E-53 T 12-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 ALFP_1196 f40961e86b35ef1dc4bb055af8861b54 72 SMART SM00530 4 59 7.1E-12 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_1196 f40961e86b35ef1dc4bb055af8861b54 72 Gene3D G3DSA:1.10.260.40 1 72 2.9E-16 T 12-10-2018 ALFP_1196 f40961e86b35ef1dc4bb055af8861b54 72 SUPERFAMILY SSF47413 4 66 5.07E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_1196 f40961e86b35ef1dc4bb055af8861b54 72 Pfam PF01381 Helix-turn-helix 5 53 2.0E-12 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_3697 f108142bbc85b62681686558c5a60da1 455 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 293 454 1.8E-46 T 12-10-2018 IPR000160 GGDEF domain ALFP_3697 f108142bbc85b62681686558c5a60da1 455 Pfam PF11563 Protoglobin 29 163 3.3E-14 T 12-10-2018 ALFP_3697 f108142bbc85b62681686558c5a60da1 455 Gene3D G3DSA:1.10.490.10 2 156 5.6E-49 T 12-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 ALFP_3697 f108142bbc85b62681686558c5a60da1 455 Gene3D G3DSA:3.30.70.270 297 455 2.4E-51 T 12-10-2018 ALFP_3697 f108142bbc85b62681686558c5a60da1 455 SMART SM00267 282 455 2.5E-51 T 12-10-2018 IPR000160 GGDEF domain ALFP_3697 f108142bbc85b62681686558c5a60da1 455 Pfam PF00990 Diguanylate cyclase, GGDEF domain 296 451 4.3E-41 T 12-10-2018 IPR000160 GGDEF domain ALFP_3697 f108142bbc85b62681686558c5a60da1 455 SUPERFAMILY SSF46458 30 155 2.16E-19 T 12-10-2018 IPR009050 Globin-like superfamily ALFP_3697 f108142bbc85b62681686558c5a60da1 455 SUPERFAMILY SSF55073 299 454 4.63E-44 T 12-10-2018 IPR029787 Nucleotide cyclase ALFP_0091 b54fb7c2dc4ab2f066888f22696697cd 530 Gene3D G3DSA:3.50.50.60 191 326 8.3E-17 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0091 b54fb7c2dc4ab2f066888f22696697cd 530 Gene3D G3DSA:3.50.50.60 7 116 4.9E-14 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0091 b54fb7c2dc4ab2f066888f22696697cd 530 Pfam PF13450 NAD(P)-binding Rossmann-like domain 11 64 1.9E-12 T 12-10-2018 ALFP_0091 b54fb7c2dc4ab2f066888f22696697cd 530 SUPERFAMILY SSF51905 6 529 8.1E-41 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0311 ba8c67654e20d8da716395f7b29edb4e 397 Gene3D G3DSA:1.20.1720.10 6 385 6.6E-93 T 12-10-2018 ALFP_0311 ba8c67654e20d8da716395f7b29edb4e 397 SUPERFAMILY SSF103473 4 385 4.71E-55 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_0311 ba8c67654e20d8da716395f7b29edb4e 397 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 6 379 2.1E-73 T 12-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 ALFP_0311 ba8c67654e20d8da716395f7b29edb4e 397 Pfam PF07690 Major Facilitator Superfamily 11 348 1.9E-38 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_2442 5bf236e2cd7f45ee08df608665e05fce 312 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 216 232 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site ALFP_2442 5bf236e2cd7f45ee08df608665e05fce 312 Gene3D G3DSA:3.40.50.720 95 278 3.3E-92 T 12-10-2018 ALFP_2442 5bf236e2cd7f45ee08df608665e05fce 312 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 277 2.9E-44 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 ALFP_2442 5bf236e2cd7f45ee08df608665e05fce 312 SUPERFAMILY SSF51735 97 278 4.94E-46 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2442 5bf236e2cd7f45ee08df608665e05fce 312 Gene3D G3DSA:3.40.50.720 21 307 3.3E-92 T 12-10-2018 ALFP_3337 1711940c4f8e19d0e6cfa07d0c12ce03 233 ProSitePatterns PS00211 ABC transporters family signature. 122 136 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3337 1711940c4f8e19d0e6cfa07d0c12ce03 233 Pfam PF00005 ABC transporter 17 149 2.3E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3337 1711940c4f8e19d0e6cfa07d0c12ce03 233 Gene3D G3DSA:3.40.50.300 1 229 5.9E-58 T 12-10-2018 ALFP_3337 1711940c4f8e19d0e6cfa07d0c12ce03 233 SUPERFAMILY SSF52540 1 207 5.45E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3337 1711940c4f8e19d0e6cfa07d0c12ce03 233 SMART SM00382 26 199 6.4E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3529 6102599ef86618cdcd47c11fb6f3d2be 683 Pfam PF07715 TonB-dependent Receptor Plug Domain 60 147 4.8E-12 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_3529 6102599ef86618cdcd47c11fb6f3d2be 683 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 50 683 1.9E-252 T 12-10-2018 IPR010100 TonB-dependent copper receptor ALFP_3529 6102599ef86618cdcd47c11fb6f3d2be 683 Gene3D G3DSA:2.170.130.10 56 155 5.5E-13 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_3529 6102599ef86618cdcd47c11fb6f3d2be 683 SUPERFAMILY SSF56935 21 683 1.65E-90 T 12-10-2018 ALFP_3529 6102599ef86618cdcd47c11fb6f3d2be 683 Gene3D G3DSA:2.40.170.20 160 683 1.3E-74 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_3529 6102599ef86618cdcd47c11fb6f3d2be 683 Pfam PF00593 TonB dependent receptor 205 680 4.0E-47 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_0904 9129079553ee4ebde1d50caba1134c3e 312 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 12 303 2.3E-91 T 12-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 ALFP_0904 9129079553ee4ebde1d50caba1134c3e 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 300 1.1E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0904 9129079553ee4ebde1d50caba1134c3e 312 Gene3D G3DSA:1.10.3720.10 65 308 5.9E-30 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0904 9129079553ee4ebde1d50caba1134c3e 312 SUPERFAMILY SSF161098 21 296 1.15E-34 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0249 fa4203efd9fb7738893d41e41d3ef454 278 SUPERFAMILY SSF53067 1 119 8.42E-16 T 12-10-2018 ALFP_0249 fa4203efd9fb7738893d41e41d3ef454 278 SUPERFAMILY SSF53067 133 243 9.06E-19 T 12-10-2018 ALFP_0249 fa4203efd9fb7738893d41e41d3ef454 278 Gene3D G3DSA:3.30.420.40 3 133 7.7E-52 T 12-10-2018 ALFP_0249 fa4203efd9fb7738893d41e41d3ef454 278 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 3 241 4.6E-17 T 12-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 ALFP_0249 fa4203efd9fb7738893d41e41d3ef454 278 Pfam PF03309 Type III pantothenate kinase 3 216 2.7E-44 T 12-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 ALFP_0249 fa4203efd9fb7738893d41e41d3ef454 278 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 263 15.636 T 12-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 ALFP_0249 fa4203efd9fb7738893d41e41d3ef454 278 Gene3D G3DSA:3.30.420.490 134 249 7.7E-52 T 12-10-2018 ALFP_0670 9ac18594fed2855dae674fa1986e4d04 522 SUPERFAMILY SSF142019 98 338 7.45E-86 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_0670 9ac18594fed2855dae674fa1986e4d04 522 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 146 317 3.1E-44 T 12-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_0670 9ac18594fed2855dae674fa1986e4d04 522 SUPERFAMILY SSF140490 424 509 5.49E-28 T 12-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_0670 9ac18594fed2855dae674fa1986e4d04 522 SMART SM00928 427 472 5.4E-14 T 12-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_0670 9ac18594fed2855dae674fa1986e4d04 522 Gene3D G3DSA:3.10.20.600 330 424 3.0E-23 T 12-10-2018 ALFP_0670 9ac18594fed2855dae674fa1986e4d04 522 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 440 451 - T 12-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_0670 9ac18594fed2855dae674fa1986e4d04 522 SUPERFAMILY SSF52833 4 87 8.95E-7 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_0670 9ac18594fed2855dae674fa1986e4d04 522 Gene3D G3DSA:3.40.50.11540 151 329 4.2E-71 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_0670 9ac18594fed2855dae674fa1986e4d04 522 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 429 509 2.8E-29 T 12-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_0670 9ac18594fed2855dae674fa1986e4d04 522 SUPERFAMILY SSF142984 341 422 1.23E-20 T 12-10-2018 ALFP_0670 9ac18594fed2855dae674fa1986e4d04 522 Gene3D G3DSA:1.20.1440.230 425 520 9.1E-25 T 12-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_3248 b741ce9cc0bd7e90bdad2b2b26d14560 484 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 ALFP_3248 b741ce9cc0bd7e90bdad2b2b26d14560 484 Gene3D G3DSA:3.40.605.10 12 471 2.4E-163 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_3248 b741ce9cc0bd7e90bdad2b2b26d14560 484 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 ALFP_3248 b741ce9cc0bd7e90bdad2b2b26d14560 484 Pfam PF00171 Aldehyde dehydrogenase family 18 473 9.8E-161 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_3248 b741ce9cc0bd7e90bdad2b2b26d14560 484 Gene3D G3DSA:3.40.309.10 256 443 2.4E-163 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_3248 b741ce9cc0bd7e90bdad2b2b26d14560 484 SUPERFAMILY SSF53720 6 476 5.76E-158 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_0760 ac0386c5f402146730bf40d79d25dab1 223 SUPERFAMILY SSF110857 46 163 1.18E-8 T 12-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily ALFP_0760 ac0386c5f402146730bf40d79d25dab1 223 Pfam PF04752 ChaC-like protein 46 212 1.8E-42 T 12-10-2018 IPR006840 Glutathione-specific gamma-glutamylcyclotransferase GO:0003839|GO:0006751 KEGG: 00480+4.3.2.7|MetaCyc: PWY-7942|Reactome: R-HSA-174403 ALFP_0760 ac0386c5f402146730bf40d79d25dab1 223 Gene3D G3DSA:3.10.490.10 32 214 2.3E-7 T 12-10-2018 ALFP_2785 8b93e8c2f9c4ec5524c601de18dc029d 185 SUPERFAMILY SSF46785 23 158 1.35E-27 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2785 8b93e8c2f9c4ec5524c601de18dc029d 185 Pfam PF01047 MarR family 52 110 1.2E-11 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2785 8b93e8c2f9c4ec5524c601de18dc029d 185 SMART SM00347 45 146 3.5E-20 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2785 8b93e8c2f9c4ec5524c601de18dc029d 185 Gene3D G3DSA:1.10.10.10 7 159 1.6E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2785 8b93e8c2f9c4ec5524c601de18dc029d 185 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 86 1.6E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2785 8b93e8c2f9c4ec5524c601de18dc029d 185 PRINTS PR00598 Bacterial regulatory protein MarR family signature 106 122 1.6E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2785 8b93e8c2f9c4ec5524c601de18dc029d 185 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 102 1.6E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2785 8b93e8c2f9c4ec5524c601de18dc029d 185 PRINTS PR00598 Bacterial regulatory protein MarR family signature 136 156 1.6E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2464 69d5e11572cfe3d2c6d3cf9d68f66f1e 441 SUPERFAMILY SSF103473 21 439 1.31E-76 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2464 69d5e11572cfe3d2c6d3cf9d68f66f1e 441 Pfam PF07690 Major Facilitator Superfamily 36 400 8.9E-42 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_2464 69d5e11572cfe3d2c6d3cf9d68f66f1e 441 Gene3D G3DSA:1.20.1250.20 13 441 2.1E-72 T 12-10-2018 ALFP_3005 d202808ee7ed2065684dccaf8f7f8c76 328 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 88 7.1E-5 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ALFP_3005 d202808ee7ed2065684dccaf8f7f8c76 328 SUPERFAMILY SSF51735 118 289 3.79E-35 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3005 d202808ee7ed2065684dccaf8f7f8c76 328 Gene3D G3DSA:3.40.50.720 126 293 2.1E-119 T 12-10-2018 ALFP_3005 d202808ee7ed2065684dccaf8f7f8c76 328 Pfam PF00107 Zinc-binding dehydrogenase 159 271 1.5E-12 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 ALFP_3005 d202808ee7ed2065684dccaf8f7f8c76 328 Gene3D G3DSA:3.90.180.10 17 324 2.1E-119 T 12-10-2018 ALFP_3005 d202808ee7ed2065684dccaf8f7f8c76 328 SUPERFAMILY SSF50129 3 146 2.44E-44 T 12-10-2018 IPR011032 GroES-like superfamily ALFP_3005 d202808ee7ed2065684dccaf8f7f8c76 328 SMART SM00829 12 324 5.1E-6 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 ALFP_3005 d202808ee7ed2065684dccaf8f7f8c76 328 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 4 326 1.8E-136 T 12-10-2018 IPR014188 Acrylyl-CoA reductase AcuI ALFP_1072 26565f436d9ce1785f7c5ca45b114096 326 Gene3D G3DSA:1.10.10.10 60 156 3.6E-31 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1072 26565f436d9ce1785f7c5ca45b114096 326 Pfam PF04079 Segregation and condensation complex subunit ScpB 3 147 3.5E-42 T 12-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 ALFP_1072 26565f436d9ce1785f7c5ca45b114096 326 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 33 156 9.5E-29 T 12-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 ALFP_1072 26565f436d9ce1785f7c5ca45b114096 326 SUPERFAMILY SSF46785 65 139 1.79E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1072 26565f436d9ce1785f7c5ca45b114096 326 SUPERFAMILY SSF46785 12 60 1.66E-6 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0688 3c82760b59e231d24dfdb1a0635b12da 283 SUPERFAMILY SSF103481 42 136 1.57E-6 T 12-10-2018 ALFP_0688 3c82760b59e231d24dfdb1a0635b12da 283 SUPERFAMILY SSF103481 184 281 2.09E-7 T 12-10-2018 ALFP_3161 1a6ba3b9475136ee4b8ce32ff00f8b70 267 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 4 264 2.9E-42 T 12-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 ALFP_3161 1a6ba3b9475136ee4b8ce32ff00f8b70 267 PIRSF PIRSF006157 1 265 2.8E-87 T 12-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 ALFP_3161 1a6ba3b9475136ee4b8ce32ff00f8b70 267 Gene3D G3DSA:3.40.830.10 1 264 4.6E-88 T 12-10-2018 ALFP_3161 1a6ba3b9475136ee4b8ce32ff00f8b70 267 SUPERFAMILY SSF53213 1 264 2.62E-84 T 12-10-2018 ALFP_1247 894d3142f0af485a09f94d4a0b37c36b 237 Pfam PF00005 ABC transporter 25 174 9.8E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1247 894d3142f0af485a09f94d4a0b37c36b 237 SMART SM00382 29 228 2.0E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1247 894d3142f0af485a09f94d4a0b37c36b 237 SUPERFAMILY SSF52540 24 211 5.2E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1247 894d3142f0af485a09f94d4a0b37c36b 237 Gene3D G3DSA:3.40.50.300 3 214 5.2E-44 T 12-10-2018 ALFP_2727 a6d82e655d611679015c9ad93f4e70de 429 SUPERFAMILY SSF53383 4 421 6.05E-175 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2727 a6d82e655d611679015c9ad93f4e70de 429 Gene3D G3DSA:3.90.1150.10 10 394 6.2E-180 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_2727 a6d82e655d611679015c9ad93f4e70de 429 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 222 238 - T 12-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 ALFP_2727 a6d82e655d611679015c9ad93f4e70de 429 Gene3D G3DSA:3.40.640.10 37 290 6.2E-180 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2727 a6d82e655d611679015c9ad93f4e70de 429 PIRSF PIRSF000412 1 426 2.2E-164 T 12-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 ALFP_2727 a6d82e655d611679015c9ad93f4e70de 429 Pfam PF00464 Serine hydroxymethyltransferase 8 386 1.4E-171 T 12-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 ALFP_2727 a6d82e655d611679015c9ad93f4e70de 429 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 421 50.943 T 12-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 ALFP_0962 e30971614492997fcdf0b4b0f2eb0de2 237 TIGRFAM TIGR03134 malonate_gamma: biotin-independent malonate decarboxylase, gamma subunit 3 235 1.0E-76 T 12-10-2018 IPR009648 Biotin-dependent malonate decarboxylase, gamma subunit GO:0044262 MetaCyc: PWY-6060 ALFP_0962 e30971614492997fcdf0b4b0f2eb0de2 237 Gene3D G3DSA:3.90.226.10 4 225 4.8E-17 T 12-10-2018 ALFP_0962 e30971614492997fcdf0b4b0f2eb0de2 237 SUPERFAMILY SSF52096 26 209 9.59E-15 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_0962 e30971614492997fcdf0b4b0f2eb0de2 237 Pfam PF06833 Malonate decarboxylase gamma subunit (MdcE) 6 233 2.9E-66 T 12-10-2018 ALFP_2468 5b5439aa5d8ea37aa06fdeffd6687861 425 SUPERFAMILY SSF54631 275 388 9.27E-10 T 12-10-2018 ALFP_2468 5b5439aa5d8ea37aa06fdeffd6687861 425 Gene3D G3DSA:3.10.580.10 279 392 3.3E-7 T 12-10-2018 ALFP_2468 5b5439aa5d8ea37aa06fdeffd6687861 425 Gene3D G3DSA:3.40.50.300 26 268 7.6E-69 T 12-10-2018 ALFP_2468 5b5439aa5d8ea37aa06fdeffd6687861 425 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 36 390 2.2E-117 T 12-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 ALFP_2468 5b5439aa5d8ea37aa06fdeffd6687861 425 Pfam PF00005 ABC transporter 43 191 1.5E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2468 5b5439aa5d8ea37aa06fdeffd6687861 425 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_2468 5b5439aa5d8ea37aa06fdeffd6687861 425 SMART SM00382 52 240 1.3E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2468 5b5439aa5d8ea37aa06fdeffd6687861 425 SUPERFAMILY SSF52540 39 269 8.31E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3364 96d64d9f49fdc2f4291324b8731dc119 303 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3364 96d64d9f49fdc2f4291324b8731dc119 303 SMART SM00382 35 215 7.7E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3364 96d64d9f49fdc2f4291324b8731dc119 303 Gene3D G3DSA:3.40.50.300 3 235 7.5E-65 T 12-10-2018 ALFP_3364 96d64d9f49fdc2f4291324b8731dc119 303 Pfam PF00005 ABC transporter 27 166 8.0E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3364 96d64d9f49fdc2f4291324b8731dc119 303 SUPERFAMILY SSF52540 12 229 1.23E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1611 4e109816b59e05be04dfd9804434cce1 513 Gene3D G3DSA:3.40.50.300 53 314 4.5E-21 T 12-10-2018 ALFP_1611 4e109816b59e05be04dfd9804434cce1 513 SUPERFAMILY SSF52540 88 261 1.16E-18 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1611 4e109816b59e05be04dfd9804434cce1 513 Pfam PF01926 50S ribosome-binding GTPase 97 223 1.2E-7 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_1463 edbbd5ac8ad1eaa3c4724237c83bbd7d 280 SMART SM00892 85 274 1.4E-32 T 12-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 ALFP_1463 edbbd5ac8ad1eaa3c4724237c83bbd7d 280 SMART SM00477 86 277 5.9E-25 T 12-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 ALFP_1463 edbbd5ac8ad1eaa3c4724237c83bbd7d 280 SUPERFAMILY SSF54060 64 274 1.65E-55 T 12-10-2018 ALFP_1463 edbbd5ac8ad1eaa3c4724237c83bbd7d 280 Gene3D G3DSA:3.40.570.10 74 279 2.5E-47 T 12-10-2018 ALFP_1463 edbbd5ac8ad1eaa3c4724237c83bbd7d 280 Pfam PF01223 DNA/RNA non-specific endonuclease 80 245 6.1E-43 T 12-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 ALFP_3277 c3b3abe81e67dfa2b891f5f81829b6d7 275 Gene3D G3DSA:1.10.3720.10 75 269 4.8E-22 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3277 c3b3abe81e67dfa2b891f5f81829b6d7 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 270 4.6E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_3277 c3b3abe81e67dfa2b891f5f81829b6d7 275 SUPERFAMILY SSF161098 77 260 1.7E-25 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0366 e4c9d34fb287976bbea42b078cdd4869 408 Gene3D G3DSA:3.40.50.10540 9 402 3.3E-145 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_0366 e4c9d34fb287976bbea42b078cdd4869 408 Gene3D G3DSA:3.30.1540.10 244 335 3.3E-145 T 12-10-2018 ALFP_0366 e4c9d34fb287976bbea42b078cdd4869 408 Pfam PF02515 CoA-transferase family III 10 384 1.5E-136 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 ALFP_0366 e4c9d34fb287976bbea42b078cdd4869 408 SUPERFAMILY SSF89796 9 405 8.5E-147 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_2927 19ad58ee46fb9dc46a25f7f3f1b7d602 323 Gene3D G3DSA:3.40.190.150 30 312 1.1E-71 T 12-10-2018 ALFP_2927 19ad58ee46fb9dc46a25f7f3f1b7d602 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 318 3.7E-54 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_2927 19ad58ee46fb9dc46a25f7f3f1b7d602 323 PIRSF PIRSF017082 5 322 3.3E-49 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_2927 19ad58ee46fb9dc46a25f7f3f1b7d602 323 SUPERFAMILY SSF53850 116 280 1.9E-6 T 12-10-2018 ALFP_2927 19ad58ee46fb9dc46a25f7f3f1b7d602 323 Gene3D G3DSA:3.40.190.10 123 244 1.1E-71 T 12-10-2018 ALFP_3637 5322b31908f2576f00634015eb21f865 512 SUPERFAMILY SSF56954 27 446 2.49E-68 T 12-10-2018 ALFP_3637 5322b31908f2576f00634015eb21f865 512 Pfam PF02321 Outer membrane efflux protein 55 237 1.3E-13 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_3637 5322b31908f2576f00634015eb21f865 512 Pfam PF02321 Outer membrane efflux protein 271 445 7.6E-22 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_3637 5322b31908f2576f00634015eb21f865 512 Gene3D G3DSA:1.20.1600.10 53 455 2.3E-69 T 12-10-2018 ALFP_3637 5322b31908f2576f00634015eb21f865 512 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 51 452 1.2E-80 T 12-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 ALFP_3192 b867d59cb778bf933689f5834fd29732 161 Pfam PF04542 Sigma-70 region 2 4 68 3.5E-13 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_3192 b867d59cb778bf933689f5834fd29732 161 Gene3D G3DSA:1.10.1740.10 1 65 4.3E-8 T 12-10-2018 ALFP_3192 b867d59cb778bf933689f5834fd29732 161 Pfam PF08281 Sigma-70, region 4 104 154 8.6E-13 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ALFP_3192 b867d59cb778bf933689f5834fd29732 161 SUPERFAMILY SSF88659 85 158 7.66E-14 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like ALFP_3192 b867d59cb778bf933689f5834fd29732 161 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 156 2.0E-26 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 ALFP_3192 b867d59cb778bf933689f5834fd29732 161 Gene3D G3DSA:1.10.10.10 66 160 3.8E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3192 b867d59cb778bf933689f5834fd29732 161 SUPERFAMILY SSF88946 3 67 9.42E-14 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_0282 fb329b4cdd0ad84b182df7150e9e3fef 515 Gene3D G3DSA:3.30.450.20 32 186 1.3E-44 T 12-10-2018 ALFP_0282 fb329b4cdd0ad84b182df7150e9e3fef 515 Pfam PF17200 Single Cache domain 2 37 185 8.9E-36 T 12-10-2018 IPR033480 Single Cache domain 2 ALFP_0282 fb329b4cdd0ad84b182df7150e9e3fef 515 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 391 1.1E-43 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_0282 fb329b4cdd0ad84b182df7150e9e3fef 515 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 287 316 1.1E-43 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_0282 fb329b4cdd0ad84b182df7150e9e3fef 515 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 422 1.1E-43 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_0282 fb329b4cdd0ad84b182df7150e9e3fef 515 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 470 1.1E-43 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_0282 fb329b4cdd0ad84b182df7150e9e3fef 515 SUPERFAMILY SSF58104 257 514 2.22E-63 T 12-10-2018 ALFP_0282 fb329b4cdd0ad84b182df7150e9e3fef 515 Gene3D G3DSA:1.10.287.950 221 515 8.7E-74 T 12-10-2018 ALFP_0282 fb329b4cdd0ad84b182df7150e9e3fef 515 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 480 1.9E-44 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 ALFP_0282 fb329b4cdd0ad84b182df7150e9e3fef 515 SMART SM00283 266 513 1.8E-72 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 ALFP_0282 fb329b4cdd0ad84b182df7150e9e3fef 515 SMART SM01049 33 127 1.1E-33 T 12-10-2018 IPR033480 Single Cache domain 2 ALFP_2707 590b2f1011606c11009e2e53f8720bda 414 Gene3D G3DSA:1.20.1250.20 7 201 7.6E-40 T 12-10-2018 ALFP_2707 590b2f1011606c11009e2e53f8720bda 414 Gene3D G3DSA:1.20.1250.20 206 402 8.6E-24 T 12-10-2018 ALFP_2707 590b2f1011606c11009e2e53f8720bda 414 ProSitePatterns PS00217 Sugar transport proteins signature 2. 109 134 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ALFP_2707 590b2f1011606c11009e2e53f8720bda 414 ProSitePatterns PS00216 Sugar transport proteins signature 1. 67 83 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ALFP_2707 590b2f1011606c11009e2e53f8720bda 414 SUPERFAMILY SSF103473 5 395 6.8E-70 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2707 590b2f1011606c11009e2e53f8720bda 414 Pfam PF07690 Major Facilitator Superfamily 18 331 3.1E-41 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_3716 a78ad3dc45cd6e7441dff7b617260947 365 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 14 30 3.7E-13 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_3716 a78ad3dc45cd6e7441dff7b617260947 365 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 55 73 3.7E-13 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_3716 a78ad3dc45cd6e7441dff7b617260947 365 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 243 261 3.7E-13 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_3716 a78ad3dc45cd6e7441dff7b617260947 365 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 36 52 3.7E-13 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_3716 a78ad3dc45cd6e7441dff7b617260947 365 Pfam PF13458 Periplasmic binding protein 13 352 5.6E-74 T 12-10-2018 IPR028081 Leucine-binding protein domain ALFP_3716 a78ad3dc45cd6e7441dff7b617260947 365 SUPERFAMILY SSF53822 13 357 2.22E-97 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_3716 a78ad3dc45cd6e7441dff7b617260947 365 Gene3D G3DSA:3.40.50.2300 133 261 2.9E-99 T 12-10-2018 ALFP_3716 a78ad3dc45cd6e7441dff7b617260947 365 Gene3D G3DSA:3.40.50.2300 15 330 2.9E-99 T 12-10-2018 ALFP_2967 d5405da27b9900b66d5de1943921544b 363 Gene3D G3DSA:2.40.420.20 282 349 3.6E-80 T 12-10-2018 ALFP_2967 d5405da27b9900b66d5de1943921544b 363 Gene3D G3DSA:2.40.50.100 71 199 3.6E-80 T 12-10-2018 ALFP_2967 d5405da27b9900b66d5de1943921544b 363 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 60 271 2.3E-30 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain ALFP_2967 d5405da27b9900b66d5de1943921544b 363 SUPERFAMILY SSF111369 62 277 2.35E-48 T 12-10-2018 ALFP_2967 d5405da27b9900b66d5de1943921544b 363 Gene3D G3DSA:1.10.287.470 106 165 3.6E-80 T 12-10-2018 ALFP_2967 d5405da27b9900b66d5de1943921544b 363 Gene3D G3DSA:2.40.30.170 61 281 3.6E-80 T 12-10-2018 ALFP_2967 d5405da27b9900b66d5de1943921544b 363 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 47 351 9.2E-83 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 ALFP_1687 b6b8654e1c3b9f8c9d76fc2fe78beac9 252 Gene3D G3DSA:2.20.25.570 143 209 3.4E-28 T 12-10-2018 ALFP_1687 b6b8654e1c3b9f8c9d76fc2fe78beac9 252 SUPERFAMILY SSF53335 20 250 1.19E-21 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_1687 b6b8654e1c3b9f8c9d76fc2fe78beac9 252 Gene3D G3DSA:3.40.50.150 38 234 3.4E-28 T 12-10-2018 ALFP_1687 b6b8654e1c3b9f8c9d76fc2fe78beac9 252 Pfam PF13649 Methyltransferase domain 41 136 2.4E-9 T 12-10-2018 ALFP_3213 820f219e9861828aaa3cc0c5f81977f0 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 1 218 1.9E-107 T 12-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 ALFP_3213 820f219e9861828aaa3cc0c5f81977f0 229 SUPERFAMILY SSF46894 116 219 1.28E-31 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ALFP_3213 820f219e9861828aaa3cc0c5f81977f0 229 Gene3D G3DSA:3.40.50.2300 1 119 2.6E-36 T 12-10-2018 ALFP_3213 820f219e9861828aaa3cc0c5f81977f0 229 SMART SM00448 1 109 1.6E-35 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_3213 820f219e9861828aaa3cc0c5f81977f0 229 Gene3D G3DSA:1.10.10.10 120 220 1.8E-37 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3213 820f219e9861828aaa3cc0c5f81977f0 229 Pfam PF00072 Response regulator receiver domain 1 110 2.3E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_3213 820f219e9861828aaa3cc0c5f81977f0 229 SUPERFAMILY SSF52172 1 119 3.13E-40 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_3213 820f219e9861828aaa3cc0c5f81977f0 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 218 3.2E-27 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_3213 820f219e9861828aaa3cc0c5f81977f0 229 SMART SM00862 143 218 2.3E-27 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_2777 4ee5d06fe2b9851ca90f53e4106cfd71 156 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 25 1.2E-6 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site ALFP_2777 4ee5d06fe2b9851ca90f53e4106cfd71 156 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 4 24 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site ALFP_2777 4ee5d06fe2b9851ca90f53e4106cfd71 156 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 3 26 7.5E-8 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site ALFP_2777 4ee5d06fe2b9851ca90f53e4106cfd71 156 SUPERFAMILY SSF54523 6 91 4.55E-8 T 12-10-2018 ALFP_2777 4ee5d06fe2b9851ca90f53e4106cfd71 156 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 2 152 1.9E-16 T 12-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 ALFP_0709 76c50a55f63a3942000cca385eeba335 113 Pfam PF02699 Preprotein translocase subunit 23 102 5.4E-29 T 12-10-2018 IPR003849 Preprotein translocase YajC ALFP_0709 76c50a55f63a3942000cca385eeba335 113 SMART SM01323 19 105 3.5E-42 T 12-10-2018 IPR003849 Preprotein translocase YajC ALFP_0709 76c50a55f63a3942000cca385eeba335 113 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 21 104 5.4E-25 T 12-10-2018 IPR003849 Preprotein translocase YajC ALFP_0709 76c50a55f63a3942000cca385eeba335 113 PRINTS PR01853 Bacterial YajC preprotein translocase signature 59 77 1.0E-16 T 12-10-2018 IPR003849 Preprotein translocase YajC ALFP_0709 76c50a55f63a3942000cca385eeba335 113 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 1.0E-16 T 12-10-2018 IPR003849 Preprotein translocase YajC ALFP_2703 681a95b773cac6f977ae29b1a8833b20 284 PRINTS PR00412 Epoxide hydrolase signature 259 281 1.4E-7 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 ALFP_2703 681a95b773cac6f977ae29b1a8833b20 284 PRINTS PR00412 Epoxide hydrolase signature 121 134 1.4E-7 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 ALFP_2703 681a95b773cac6f977ae29b1a8833b20 284 PRINTS PR00412 Epoxide hydrolase signature 62 77 1.4E-7 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 ALFP_2703 681a95b773cac6f977ae29b1a8833b20 284 Pfam PF12697 Alpha/beta hydrolase family 35 276 4.8E-21 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_2703 681a95b773cac6f977ae29b1a8833b20 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 62 77 6.3E-24 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_2703 681a95b773cac6f977ae29b1a8833b20 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 228 242 6.3E-24 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_2703 681a95b773cac6f977ae29b1a8833b20 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 120 6.3E-24 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_2703 681a95b773cac6f977ae29b1a8833b20 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 121 134 6.3E-24 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_2703 681a95b773cac6f977ae29b1a8833b20 284 SUPERFAMILY SSF53474 14 283 8.31E-66 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2703 681a95b773cac6f977ae29b1a8833b20 284 Gene3D G3DSA:3.40.50.1820 2 283 1.2E-94 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1807 d0bd91ea4b213cec340ad079c5ee7f7e 227 SUPERFAMILY SSF143081 6 219 8.5E-53 T 12-10-2018 IPR036590 SOS response associated peptidase-like ALFP_1807 d0bd91ea4b213cec340ad079c5ee7f7e 227 Pfam PF02586 SOS response associated peptidase (SRAP) 5 214 1.5E-43 T 12-10-2018 IPR003738 SOS response associated peptidase (SRAP) ALFP_1807 d0bd91ea4b213cec340ad079c5ee7f7e 227 Gene3D G3DSA:3.90.1680.10 5 226 1.4E-63 T 12-10-2018 IPR036590 SOS response associated peptidase-like ALFP_1978 cbb5715f90d355a059e7bca7a83e1bd8 392 Pfam PF00144 Beta-lactamase 25 369 9.6E-54 T 12-10-2018 IPR001466 Beta-lactamase-related ALFP_1978 cbb5715f90d355a059e7bca7a83e1bd8 392 Gene3D G3DSA:3.40.710.10 9 386 1.3E-84 T 12-10-2018 ALFP_1978 cbb5715f90d355a059e7bca7a83e1bd8 392 SUPERFAMILY SSF56601 22 384 2.71E-75 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like ALFP_0805 35b54d6ef5e8dc732679d8381e13ff54 114 Pfam PF03061 Thioesterase superfamily 10 84 2.2E-16 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 ALFP_0805 35b54d6ef5e8dc732679d8381e13ff54 114 Gene3D G3DSA:3.10.129.10 1 114 6.6E-38 T 12-10-2018 ALFP_0805 35b54d6ef5e8dc732679d8381e13ff54 114 SUPERFAMILY SSF54637 2 113 1.76E-33 T 12-10-2018 IPR029069 HotDog domain superfamily ALFP_3403 41c1c0baa3126c39d2e3271a7f8aad52 628 PIRSF PIRSF028304 1 628 3.2E-161 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like ALFP_3403 41c1c0baa3126c39d2e3271a7f8aad52 628 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 628 4.4E-172 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like ALFP_3403 41c1c0baa3126c39d2e3271a7f8aad52 628 Pfam PF05947 Type VI secretion system, TssF 6 626 1.4E-189 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like ALFP_0514 0a5c27a3653b3587eaa46a995cc9b610 794 Pfam PF07660 Secretin and TonB N terminus short domain 38 87 4.0E-12 T 12-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 ALFP_0514 0a5c27a3653b3587eaa46a995cc9b610 794 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 777 794 - T 12-10-2018 IPR010917 TonB-dependent receptor, conserved site ALFP_0514 0a5c27a3653b3587eaa46a995cc9b610 794 Pfam PF00593 TonB dependent receptor 308 793 2.0E-54 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_0514 0a5c27a3653b3587eaa46a995cc9b610 794 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 132 794 1.7E-114 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 ALFP_0514 0a5c27a3653b3587eaa46a995cc9b610 794 Gene3D G3DSA:2.40.170.20 241 794 2.3E-168 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_0514 0a5c27a3653b3587eaa46a995cc9b610 794 Gene3D G3DSA:2.170.130.10 106 240 1.1E-38 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_0514 0a5c27a3653b3587eaa46a995cc9b610 794 Pfam PF07715 TonB-dependent Receptor Plug Domain 130 233 4.0E-13 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_0514 0a5c27a3653b3587eaa46a995cc9b610 794 SMART SM00965 38 88 1.2E-15 T 12-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 ALFP_0514 0a5c27a3653b3587eaa46a995cc9b610 794 Gene3D G3DSA:3.55.50.30 9 105 8.1E-27 T 12-10-2018 ALFP_0514 0a5c27a3653b3587eaa46a995cc9b610 794 SUPERFAMILY SSF56935 91 794 1.22E-130 T 12-10-2018 ALFP_2759 210cec43e4b290c3b08fe2a30edd5146 692 SUPERFAMILY SSF49899 516 686 1.73E-12 T 12-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily ALFP_2759 210cec43e4b290c3b08fe2a30edd5146 692 SUPERFAMILY SSF53649 61 330 3.11E-14 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 ALFP_2759 210cec43e4b290c3b08fe2a30edd5146 692 Gene3D G3DSA:3.40.720.10 51 180 5.3E-11 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 ALFP_2759 210cec43e4b290c3b08fe2a30edd5146 692 Gene3D G3DSA:2.60.120.200 453 684 1.2E-14 T 12-10-2018 ALFP_2759 210cec43e4b290c3b08fe2a30edd5146 692 Gene3D G3DSA:3.40.720.10 181 337 2.1E-7 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 ALFP_2759 210cec43e4b290c3b08fe2a30edd5146 692 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 516 676 1.4E-7 T 12-10-2018 ALFP_1753 0d32725a96895948e81030c9ffc4af72 299 Pfam PF04381 Putative exonuclease, RdgC 1 296 4.1E-113 T 12-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 ALFP_1753 0d32725a96895948e81030c9ffc4af72 299 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 1 298 35.165 T 12-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 ALFP_0069 c6abb2fb98161dea3347cdfc52e76883 147 Gene3D G3DSA:3.10.129.10 2 140 1.2E-28 T 12-10-2018 ALFP_0069 c6abb2fb98161dea3347cdfc52e76883 147 Pfam PF03061 Thioesterase superfamily 21 95 2.4E-6 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 ALFP_0069 c6abb2fb98161dea3347cdfc52e76883 147 SUPERFAMILY SSF54637 4 138 8.15E-33 T 12-10-2018 IPR029069 HotDog domain superfamily ALFP_0905 3c3229734b902308fa45de42be3a4f41 287 SUPERFAMILY SSF161098 33 280 2.8E-34 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0905 3c3229734b902308fa45de42be3a4f41 287 Gene3D G3DSA:1.10.3720.10 71 287 5.0E-27 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0905 3c3229734b902308fa45de42be3a4f41 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 284 5.5E-24 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0905 3c3229734b902308fa45de42be3a4f41 287 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 23 285 1.1E-85 T 12-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 ALFP_3682 f854f9c63b24210ad65727faf89a601e 125 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 125 2.5E-47 T 12-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3682 f854f9c63b24210ad65727faf89a601e 125 Gene3D G3DSA:1.20.5.710 2 54 4.0E-20 T 12-10-2018 ALFP_3682 f854f9c63b24210ad65727faf89a601e 125 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 61 125 1.0E-20 T 12-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3682 f854f9c63b24210ad65727faf89a601e 125 SUPERFAMILY SSF48300 3 61 1.57E-15 T 12-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3682 f854f9c63b24210ad65727faf89a601e 125 Gene3D G3DSA:3.30.1390.10 55 125 8.1E-31 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like ALFP_3682 f854f9c63b24210ad65727faf89a601e 125 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 59 125 6.0E-31 T 12-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3682 f854f9c63b24210ad65727faf89a601e 125 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 3 51 1.0E-18 T 12-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3682 f854f9c63b24210ad65727faf89a601e 125 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 1 125 25.589 T 12-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3682 f854f9c63b24210ad65727faf89a601e 125 SUPERFAMILY SSF54736 54 125 4.36E-25 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like ALFP_1298 b39aa433f39ac5c9ddedcec4c1776296 119 Gene3D G3DSA:1.10.760.10 34 108 5.3E-17 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1298 b39aa433f39ac5c9ddedcec4c1776296 119 SUPERFAMILY SSF46626 39 108 9.6E-14 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1305 57ba866e855437362917dba2879bba56 515 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 68 480 1.7E-74 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_1305 57ba866e855437362917dba2879bba56 515 Gene3D G3DSA:1.20.210.10 62 508 2.7E-149 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_1305 57ba866e855437362917dba2879bba56 515 SUPERFAMILY SSF81442 65 504 2.62E-85 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_0979 f450cf968ac6ce555d17e582fc6869f1 321 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 316 49.807 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_0979 f450cf968ac6ce555d17e582fc6869f1 321 SUPERFAMILY SSF52096 5 316 3.59E-102 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_0979 f450cf968ac6ce555d17e582fc6869f1 321 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 317 5.0E-149 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_0979 f450cf968ac6ce555d17e582fc6869f1 321 Gene3D G3DSA:3.90.226.10 1 318 7.0E-120 T 12-10-2018 ALFP_0979 f450cf968ac6ce555d17e582fc6869f1 321 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 6 148 1.7E-65 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_0979 f450cf968ac6ce555d17e582fc6869f1 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 134 150 3.8E-46 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_0979 f450cf968ac6ce555d17e582fc6869f1 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 113 131 3.8E-46 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_0979 f450cf968ac6ce555d17e582fc6869f1 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 169 182 3.8E-46 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_0979 f450cf968ac6ce555d17e582fc6869f1 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 153 166 3.8E-46 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_0979 f450cf968ac6ce555d17e582fc6869f1 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 88 99 3.8E-46 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_0979 f450cf968ac6ce555d17e582fc6869f1 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 197 206 3.8E-46 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_3393 9f33a0f9a9ff42555eb8b6a47ca5297c 301 SUPERFAMILY SSF103481 49 149 1.24E-14 T 12-10-2018 ALFP_3393 9f33a0f9a9ff42555eb8b6a47ca5297c 301 SUPERFAMILY SSF103481 195 291 8.63E-13 T 12-10-2018 ALFP_3393 9f33a0f9a9ff42555eb8b6a47ca5297c 301 Pfam PF00892 EamA-like transporter family 20 146 1.4E-17 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_3393 9f33a0f9a9ff42555eb8b6a47ca5297c 301 Pfam PF00892 EamA-like transporter family 159 291 8.7E-18 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_0428 6d05502d901b824b6136445d2297d9ad 275 TIGRFAM TIGR00552 nadE: NAD+ synthetase 23 273 5.0E-60 T 12-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 ALFP_0428 6d05502d901b824b6136445d2297d9ad 275 SUPERFAMILY SSF52402 9 273 1.02E-70 T 12-10-2018 ALFP_0428 6d05502d901b824b6136445d2297d9ad 275 Pfam PF02540 NAD synthase 28 272 8.7E-59 T 12-10-2018 IPR022310 NAD/GMP synthase ALFP_0428 6d05502d901b824b6136445d2297d9ad 275 Gene3D G3DSA:3.40.50.620 2 275 2.8E-74 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_0428 6d05502d901b824b6136445d2297d9ad 275 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 23 275 46.64 T 12-10-2018 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 ALFP_0496 1ae29b852bd81df879dedd6f7d9c6f76 338 SUPERFAMILY SSF46689 9 71 3.85E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0496 1ae29b852bd81df879dedd6f7d9c6f76 338 Gene3D G3DSA:1.10.357.10 1 211 4.9E-17 T 12-10-2018 ALFP_0245 c6b970a0402feb53ec561af370cfe9cf 441 SUPERFAMILY SSF53756 60 432 6.91E-11 T 12-10-2018 ALFP_0245 c6b970a0402feb53ec561af370cfe9cf 441 Gene3D G3DSA:3.40.50.2000 220 424 4.4E-52 T 12-10-2018 ALFP_0245 c6b970a0402feb53ec561af370cfe9cf 441 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 39 214 3.7E-51 T 12-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 ALFP_0245 c6b970a0402feb53ec561af370cfe9cf 441 Gene3D G3DSA:3.40.50.11720 44 213 9.9E-42 T 12-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 ALFP_3709 21d6d464b05c65edece1536d371f5f94 457 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 123 2.4E-37 T 12-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 ALFP_3709 21d6d464b05c65edece1536d371f5f94 457 Gene3D G3DSA:1.20.120.430 125 457 3.0E-102 T 12-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 ALFP_3709 21d6d464b05c65edece1536d371f5f94 457 Pfam PF01926 50S ribosome-binding GTPase 222 335 2.0E-23 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_3709 21d6d464b05c65edece1536d371f5f94 457 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 457 2.9E-103 T 12-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 ALFP_3709 21d6d464b05c65edece1536d371f5f94 457 Gene3D G3DSA:3.40.50.300 220 384 3.0E-102 T 12-10-2018 ALFP_3709 21d6d464b05c65edece1536d371f5f94 457 SUPERFAMILY SSF52540 71 374 7.96E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3709 21d6d464b05c65edece1536d371f5f94 457 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 457 32.308 T 12-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 ALFP_3709 21d6d464b05c65edece1536d371f5f94 457 Pfam PF12631 MnmE helical domain 126 454 7.4E-56 T 12-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 ALFP_3709 21d6d464b05c65edece1536d371f5f94 457 Gene3D G3DSA:3.30.1360.120 1 124 4.6E-41 T 12-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 ALFP_3709 21d6d464b05c65edece1536d371f5f94 457 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 221 372 2.0E-26 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 ALFP_0627 1e83c3786cf426bf5af299e12edc040d 89 Pfam PF01381 Helix-turn-helix 34 76 2.8E-6 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_0627 1e83c3786cf426bf5af299e12edc040d 89 Gene3D G3DSA:1.10.260.40 4 86 2.1E-15 T 12-10-2018 ALFP_0627 1e83c3786cf426bf5af299e12edc040d 89 SMART SM00530 33 88 0.0065 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_0627 1e83c3786cf426bf5af299e12edc040d 89 SUPERFAMILY SSF47413 32 84 7.51E-11 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_3433 3d9045f8f45bae6e5cc27c3a8282aea4 246 Pfam PF00977 Histidine biosynthesis protein 3 232 3.1E-81 T 12-10-2018 IPR006062 Histidine biosynthesis GO:0000105 ALFP_3433 3d9045f8f45bae6e5cc27c3a8282aea4 246 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 236 1.2E-78 T 12-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 ALFP_3433 3d9045f8f45bae6e5cc27c3a8282aea4 246 SUPERFAMILY SSF51366 1 240 1.49E-76 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 ALFP_3433 3d9045f8f45bae6e5cc27c3a8282aea4 246 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 240 36.804 T 12-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 ALFP_3433 3d9045f8f45bae6e5cc27c3a8282aea4 246 Gene3D G3DSA:3.20.20.70 1 245 6.6E-89 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0440 b67048cb5700dec1bd25f305c6e3d364 278 Pfam PF13730 Helix-turn-helix domain 22 63 8.8E-6 T 12-10-2018 ALFP_0440 b67048cb5700dec1bd25f305c6e3d364 278 Gene3D G3DSA:1.10.10.10 12 111 9.1E-7 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1816 515938381a756d12512d4095b9796be3 304 Gene3D G3DSA:1.10.760.10 47 176 9.8E-34 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1816 515938381a756d12512d4095b9796be3 304 SUPERFAMILY SSF46626 188 287 5.3E-17 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1816 515938381a756d12512d4095b9796be3 304 Gene3D G3DSA:1.10.760.10 181 301 3.5E-39 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1816 515938381a756d12512d4095b9796be3 304 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 189 277 1.5E-8 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_1816 515938381a756d12512d4095b9796be3 304 SUPERFAMILY SSF46626 65 170 4.71E-21 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2293 4efe25808d58a96234047923d296a1f0 94 Pfam PF06243 Phenylacetic acid degradation B 5 90 2.2E-38 T 12-10-2018 IPR009359 Phenylacetic acid degradation B ALFP_2293 4efe25808d58a96234047923d296a1f0 94 Gene3D G3DSA:3.10.20.520 1 65 2.3E-32 T 12-10-2018 IPR038693 Phenylacetyl-CoA epoxidase, subunit B ALFP_2293 4efe25808d58a96234047923d296a1f0 94 PIRSF PIRSF030200 1 94 8.6E-41 T 12-10-2018 IPR009359 Phenylacetic acid degradation B ALFP_2293 4efe25808d58a96234047923d296a1f0 94 TIGRFAM TIGR02157 PA_CoA_Oxy2: phenylacetate-CoA oxygenase, PaaH subunit 6 93 1.0E-40 T 12-10-2018 IPR009359 Phenylacetic acid degradation B ALFP_3657 7fbf4a0c690bf388b48293ba2f2ba6cf 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 12-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3657 7fbf4a0c690bf388b48293ba2f2ba6cf 63 Pfam PF00831 Ribosomal L29 protein 4 59 7.3E-22 T 12-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3657 7fbf4a0c690bf388b48293ba2f2ba6cf 63 Gene3D G3DSA:1.10.287.310 1 62 6.9E-26 T 12-10-2018 ALFP_3657 7fbf4a0c690bf388b48293ba2f2ba6cf 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 59 1.2E-20 T 12-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3657 7fbf4a0c690bf388b48293ba2f2ba6cf 63 SUPERFAMILY SSF46561 1 60 3.53E-20 T 12-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3657 7fbf4a0c690bf388b48293ba2f2ba6cf 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 17.114 T 12-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_0880 4b108ece2878a52d100c02d0a93f545a 355 SMART SM00062 43 272 0.004 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_0880 4b108ece2878a52d100c02d0a93f545a 355 Pfam PF13379 NMT1-like family 45 280 2.2E-30 T 12-10-2018 ALFP_0880 4b108ece2878a52d100c02d0a93f545a 355 Gene3D G3DSA:3.40.190.10 46 344 2.4E-114 T 12-10-2018 ALFP_0880 4b108ece2878a52d100c02d0a93f545a 355 Gene3D G3DSA:3.40.190.10 125 235 2.4E-114 T 12-10-2018 ALFP_0880 4b108ece2878a52d100c02d0a93f545a 355 SUPERFAMILY SSF53850 41 286 2.05E-44 T 12-10-2018 ALFP_3727 73ca8b2222bbd21d0d06db7c22a91308 129 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 124 5.8E-6 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain ALFP_3727 73ca8b2222bbd21d0d06db7c22a91308 129 Gene3D G3DSA:3.10.180.10 4 128 7.3E-18 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_3727 73ca8b2222bbd21d0d06db7c22a91308 129 SUPERFAMILY SSF54593 1 127 5.91E-19 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_0084 b49db3e8f3c61dcf8ff6566f87dcfe55 345 SUPERFAMILY SSF53850 53 268 1.27E-7 T 12-10-2018 ALFP_0084 b49db3e8f3c61dcf8ff6566f87dcfe55 345 Gene3D G3DSA:3.40.190.170 30 344 4.1E-95 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_0084 b49db3e8f3c61dcf8ff6566f87dcfe55 345 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 35 310 2.8E-39 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_1163 47f100fd8920986f1904ec88759f42b5 406 Gene3D G3DSA:3.40.1090.10 151 303 4.7E-18 T 12-10-2018 ALFP_1163 47f100fd8920986f1904ec88759f42b5 406 Gene3D G3DSA:3.40.1090.10 14 101 1.8E-16 T 12-10-2018 ALFP_1163 47f100fd8920986f1904ec88759f42b5 406 Pfam PF01734 Patatin-like phospholipase 29 242 5.5E-25 T 12-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 ALFP_1163 47f100fd8920986f1904ec88759f42b5 406 Pfam PF12536 Patatin phospholipase 279 384 1.6E-36 T 12-10-2018 IPR021095 Protein of unknown function DUF3734 ALFP_1163 47f100fd8920986f1904ec88759f42b5 406 SUPERFAMILY SSF52151 26 373 2.79E-55 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase ALFP_2211 00fda53b3799fc29a586b1bd0d0ddc18 434 SMART SM00387 323 434 8.9E-13 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2211 00fda53b3799fc29a586b1bd0d0ddc18 434 SUPERFAMILY SSF55874 278 431 1.31E-17 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_2211 00fda53b3799fc29a586b1bd0d0ddc18 434 Gene3D G3DSA:3.30.565.10 283 434 2.9E-16 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_2211 00fda53b3799fc29a586b1bd0d0ddc18 434 Gene3D G3DSA:1.10.287.130 170 282 8.6E-14 T 12-10-2018 ALFP_2211 00fda53b3799fc29a586b1bd0d0ddc18 434 SUPERFAMILY SSF47384 199 267 4.51E-11 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_2211 00fda53b3799fc29a586b1bd0d0ddc18 434 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 327 432 3.8E-11 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_1925 1173da48a4fefef04305a46fdf514f2b 489 Gene3D G3DSA:2.60.40.420 2 153 4.4E-49 T 12-10-2018 IPR008972 Cupredoxin ALFP_1925 1173da48a4fefef04305a46fdf514f2b 489 ProSitePatterns PS00080 Multicopper oxidases signature 2. 471 482 - T 12-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 ALFP_1925 1173da48a4fefef04305a46fdf514f2b 489 SUPERFAMILY SSF49503 163 270 2.0E-14 T 12-10-2018 IPR008972 Cupredoxin ALFP_1925 1173da48a4fefef04305a46fdf514f2b 489 Pfam PF07732 Multicopper oxidase 46 157 6.1E-32 T 12-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 ALFP_1925 1173da48a4fefef04305a46fdf514f2b 489 Gene3D G3DSA:2.60.40.420 348 489 5.4E-41 T 12-10-2018 IPR008972 Cupredoxin ALFP_1925 1173da48a4fefef04305a46fdf514f2b 489 Pfam PF07731 Multicopper oxidase 378 488 6.5E-31 T 12-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 ALFP_1925 1173da48a4fefef04305a46fdf514f2b 489 SUPERFAMILY SSF49503 373 488 2.01E-35 T 12-10-2018 IPR008972 Cupredoxin ALFP_1925 1173da48a4fefef04305a46fdf514f2b 489 SUPERFAMILY SSF49503 49 158 1.36E-33 T 12-10-2018 IPR008972 Cupredoxin ALFP_1925 1173da48a4fefef04305a46fdf514f2b 489 Gene3D G3DSA:2.60.40.420 156 316 1.3E-39 T 12-10-2018 IPR008972 Cupredoxin ALFP_0079 6b8ca2b7b2b04ed1e2cb8600f1ff7e1b 393 PIRSF PIRSF000429 11 378 5.4E-17 T 12-10-2018 IPR002155 Thiolase GO:0016747 ALFP_0079 6b8ca2b7b2b04ed1e2cb8600f1ff7e1b 393 Gene3D G3DSA:3.40.47.10 11 386 9.4E-84 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_0079 6b8ca2b7b2b04ed1e2cb8600f1ff7e1b 393 SUPERFAMILY SSF53901 25 364 1.48E-22 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_1008 3c766b7550febafbd0e3b8b630987f86 533 SUPERFAMILY SSF47203 284 434 3.54E-40 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 ALFP_1008 3c766b7550febafbd0e3b8b630987f86 533 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 390 409 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 ALFP_1008 3c766b7550febafbd0e3b8b630987f86 533 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 175 266 1.1E-13 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 ALFP_1008 3c766b7550febafbd0e3b8b630987f86 533 SUPERFAMILY SSF56645 76 284 3.8E-26 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 ALFP_1008 3c766b7550febafbd0e3b8b630987f86 533 Gene3D G3DSA:1.20.140.10 278 432 1.1E-34 T 12-10-2018 ALFP_1008 3c766b7550febafbd0e3b8b630987f86 533 Gene3D G3DSA:2.40.110.20 127 277 4.0E-44 T 12-10-2018 ALFP_1008 3c766b7550febafbd0e3b8b630987f86 533 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 277 431 4.3E-33 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 ALFP_2053 5febb60452f970fa8156bceab6f3dcbc 550 Pfam PF00501 AMP-binding enzyme 26 451 1.9E-90 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_2053 5febb60452f970fa8156bceab6f3dcbc 550 Pfam PF13193 AMP-binding enzyme C-terminal domain 460 534 1.8E-19 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain ALFP_2053 5febb60452f970fa8156bceab6f3dcbc 550 SUPERFAMILY SSF56801 12 546 2.09E-135 T 12-10-2018 ALFP_2053 5febb60452f970fa8156bceab6f3dcbc 550 Gene3D G3DSA:3.40.50.12780 7 446 3.9E-100 T 12-10-2018 ALFP_2053 5febb60452f970fa8156bceab6f3dcbc 550 ProSitePatterns PS00455 Putative AMP-binding domain signature. 194 205 - T 12-10-2018 IPR020845 AMP-binding, conserved site ALFP_2053 5febb60452f970fa8156bceab6f3dcbc 550 Gene3D G3DSA:3.30.300.310 447 549 1.2E-33 T 12-10-2018 ALFP_1735 8960fb5b2cb3b387ab14d97357ce8f6f 298 SUPERFAMILY SSF52440 5 95 2.59E-27 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily ALFP_1735 8960fb5b2cb3b387ab14d97357ce8f6f 298 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 3 295 30.382 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_1735 8960fb5b2cb3b387ab14d97357ce8f6f 298 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 236 265 - T 12-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_1735 8960fb5b2cb3b387ab14d97357ce8f6f 298 Gene3D G3DSA:3.40.50.20 1 84 1.4E-25 T 12-10-2018 ALFP_1735 8960fb5b2cb3b387ab14d97357ce8f6f 298 Gene3D G3DSA:3.30.470.20 86 291 8.1E-59 T 12-10-2018 ALFP_1735 8960fb5b2cb3b387ab14d97357ce8f6f 298 SUPERFAMILY SSF56059 97 295 9.3E-44 T 12-10-2018 ALFP_1735 8960fb5b2cb3b387ab14d97357ce8f6f 298 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 294 4.0E-77 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_1735 8960fb5b2cb3b387ab14d97357ce8f6f 298 Pfam PF07478 D-ala D-ala ligase C-terminus 119 292 7.7E-37 T 12-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_1735 8960fb5b2cb3b387ab14d97357ce8f6f 298 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 63 74 - T 12-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_1735 8960fb5b2cb3b387ab14d97357ce8f6f 298 Gene3D G3DSA:3.30.1490.20 111 170 8.1E-59 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 ALFP_1735 8960fb5b2cb3b387ab14d97357ce8f6f 298 PIRSF PIRSF039102 1 54 2.4E-8 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_1735 8960fb5b2cb3b387ab14d97357ce8f6f 298 PIRSF PIRSF039102 43 298 3.4E-64 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_1735 8960fb5b2cb3b387ab14d97357ce8f6f 298 Pfam PF01820 D-ala D-ala ligase N-terminus 5 84 9.6E-15 T 12-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 ALFP_2626 2583d444df4195416f5b9b7016014bd4 118 Gene3D G3DSA:1.10.760.10 33 115 2.6E-17 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2626 2583d444df4195416f5b9b7016014bd4 118 SUPERFAMILY SSF46626 45 115 1.72E-16 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2172 4a357824d661da3e4ae132fbafb2873a 242 Pfam PF00005 ABC transporter 20 168 1.5E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2172 4a357824d661da3e4ae132fbafb2873a 242 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_2172 4a357824d661da3e4ae132fbafb2873a 242 PIRSF PIRSF039085 1 242 5.3E-100 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 ALFP_2172 4a357824d661da3e4ae132fbafb2873a 242 SMART SM00382 29 216 4.4E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2172 4a357824d661da3e4ae132fbafb2873a 242 SUPERFAMILY SSF52540 4 235 2.66E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2172 4a357824d661da3e4ae132fbafb2873a 242 Gene3D G3DSA:3.40.50.300 4 241 6.6E-73 T 12-10-2018 ALFP_3183 f8ad4f05bfaa175076030e1c444953b2 289 Hamap MF_01805 Segregation and condensation protein A [scpA]. 43 277 20.73 T 12-10-2018 IPR003768 Segregation and condensation protein A ALFP_3183 f8ad4f05bfaa175076030e1c444953b2 289 Pfam PF02616 Segregation and condensation protein ScpA 60 274 3.5E-32 T 12-10-2018 IPR003768 Segregation and condensation protein A ALFP_3606 f5a0c3bacc3401aa45ee9d9fc9da4d62 207 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 7 197 5.9E-60 T 12-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 ALFP_3606 f5a0c3bacc3401aa45ee9d9fc9da4d62 207 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 12 201 25.764 T 12-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 ALFP_3606 f5a0c3bacc3401aa45ee9d9fc9da4d62 207 Pfam PF01926 50S ribosome-binding GTPase 26 151 1.1E-16 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_3606 f5a0c3bacc3401aa45ee9d9fc9da4d62 207 SUPERFAMILY SSF52540 8 201 3.81E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3606 f5a0c3bacc3401aa45ee9d9fc9da4d62 207 Gene3D G3DSA:3.40.50.300 1 205 3.6E-49 T 12-10-2018 ALFP_3074 e09057116b5404c81ebb236d0582e065 130 Gene3D G3DSA:3.30.230.10 2 130 4.1E-51 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ALFP_3074 e09057116b5404c81ebb236d0582e065 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 7.8E-46 T 12-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 ALFP_3074 e09057116b5404c81ebb236d0582e065 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 31.315 T 12-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid ALFP_3074 e09057116b5404c81ebb236d0582e065 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 12-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 ALFP_3074 e09057116b5404c81ebb236d0582e065 130 SUPERFAMILY SSF54211 5 130 9.48E-47 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_2215 2b01091e15b654e02e4be2b7015cfb3e 181 Gene3D G3DSA:3.40.50.2020 9 176 2.8E-34 T 12-10-2018 ALFP_2215 2b01091e15b654e02e4be2b7015cfb3e 181 SUPERFAMILY SSF53271 9 176 1.97E-34 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like ALFP_2215 2b01091e15b654e02e4be2b7015cfb3e 181 Pfam PF00156 Phosphoribosyl transferase domain 14 161 2.7E-25 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 ALFP_2978 e4fd25b4ed4ae712d704041c8dc47610 264 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 6 147 7.3E-13 T 12-10-2018 IPR010419 Carbon monoxide dehydrogenase subunit G ALFP_2978 e4fd25b4ed4ae712d704041c8dc47610 264 Gene3D G3DSA:3.30.530.20 1 159 2.3E-37 T 12-10-2018 IPR023393 START-like domain superfamily ALFP_2978 e4fd25b4ed4ae712d704041c8dc47610 264 SUPERFAMILY SSF55961 1 150 2.08E-30 T 12-10-2018 ALFP_0839 d16d89982fce91cec0f6379efcc750f9 161 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 9 136 6.7E-36 T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 ALFP_0839 d16d89982fce91cec0f6379efcc750f9 161 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 8 136 3.3E-39 T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 ALFP_0839 d16d89982fce91cec0f6379efcc750f9 161 Gene3D G3DSA:3.30.70.560 6 161 6.0E-51 T 12-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 ALFP_0839 d16d89982fce91cec0f6379efcc750f9 161 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 91 102 - T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 ALFP_0839 d16d89982fce91cec0f6379efcc750f9 161 SUPERFAMILY SSF55083 6 158 6.15E-49 T 12-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 ALFP_2336 5315e2f3dac5274c680ed426d58a5088 401 Pfam PF00149 Calcineurin-like phosphoesterase 175 296 5.8E-8 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 ALFP_2336 5315e2f3dac5274c680ed426d58a5088 401 SUPERFAMILY SSF56300 170 400 4.97E-31 T 12-10-2018 ALFP_2336 5315e2f3dac5274c680ed426d58a5088 401 Gene3D G3DSA:3.60.21.10 174 365 2.8E-18 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like ALFP_2455 b96b8421e7e989231861ccf42470367a 484 Pfam PF06097 Bacterial protein of unknown function (DUF945) 1 471 5.0E-89 T 12-10-2018 IPR010352 Protein of unknown function DUF945 ALFP_2817 de4fb2cf9f7c97a08b35d3b2b9de614a 92 Gene3D G3DSA:1.10.245.10 11 92 3.1E-28 T 12-10-2018 IPR036885 SWIB/MDM2 domain superfamily ALFP_2817 de4fb2cf9f7c97a08b35d3b2b9de614a 92 SUPERFAMILY SSF47592 12 91 3.05E-28 T 12-10-2018 IPR036885 SWIB/MDM2 domain superfamily ALFP_2817 de4fb2cf9f7c97a08b35d3b2b9de614a 92 SMART SM00151 17 92 5.0E-32 T 12-10-2018 IPR019835 SWIB domain Reactome: R-HSA-3214858|Reactome: R-HSA-8939243 ALFP_2817 de4fb2cf9f7c97a08b35d3b2b9de614a 92 Pfam PF02201 SWIB/MDM2 domain 19 91 2.1E-28 T 12-10-2018 IPR003121 SWIB/MDM2 domain GO:0005515 ALFP_3650 5ff41672cb3057595eb599009d6bb8b5 276 SUPERFAMILY SSF161098 79 264 7.33E-24 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3650 5ff41672cb3057595eb599009d6bb8b5 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 275 6.9E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_3650 5ff41672cb3057595eb599009d6bb8b5 276 Gene3D G3DSA:1.10.3720.10 79 270 6.7E-17 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 Pfam PF00258 Flavodoxin 71 192 2.6E-28 T 12-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 Pfam PF00175 Oxidoreductase NAD-binding domain 468 574 8.4E-20 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 5 610 4.4E-229 T 12-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 467 486 2.9E-29 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 280 290 2.9E-29 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 559 567 2.9E-29 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 431 440 2.9E-29 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 398 405 2.9E-29 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 505 516 2.9E-29 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 492 501 2.9E-29 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 536 552 2.9E-29 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 Gene3D G3DSA:2.40.30.10 242 450 2.2E-70 T 12-10-2018 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 SUPERFAMILY SSF52218 67 211 8.98E-43 T 12-10-2018 IPR029039 Flavoprotein-like superfamily ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 SUPERFAMILY SSF63380 239 457 5.67E-64 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 Pfam PF00667 FAD binding domain 240 436 4.4E-31 T 12-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 Gene3D G3DSA:3.40.50.360 59 223 6.8E-44 T 12-10-2018 IPR029039 Flavoprotein-like superfamily ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 PIRSF PIRSF000207 1 610 3.8E-217 T 12-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 PRINTS PR00369 Flavodoxin signature 118 129 4.6E-16 T 12-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 PRINTS PR00369 Flavodoxin signature 70 83 4.6E-16 T 12-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 PRINTS PR00369 Flavodoxin signature 174 193 4.6E-16 T 12-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 PRINTS PR00369 Flavodoxin signature 150 160 4.6E-16 T 12-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 Gene3D G3DSA:3.40.50.80 456 610 1.6E-57 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 SUPERFAMILY SSF52343 456 610 7.6E-50 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain ALFP_3647 cc37f25b4d3325f8fa84e72d3feb32ac 610 Gene3D G3DSA:1.20.990.10 290 396 2.2E-70 T 12-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 ALFP_0026 62d1dcf741856ae2eb840f965f2b3db4 341 Pfam PF02515 CoA-transferase family III 5 329 5.6E-81 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 ALFP_0026 62d1dcf741856ae2eb840f965f2b3db4 341 Gene3D G3DSA:3.40.50.10540 5 325 2.3E-113 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_0026 62d1dcf741856ae2eb840f965f2b3db4 341 Gene3D G3DSA:3.30.1540.10 219 307 2.3E-113 T 12-10-2018 ALFP_0026 62d1dcf741856ae2eb840f965f2b3db4 341 SUPERFAMILY SSF89796 3 340 1.57E-104 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_2802 ec1afce73135f67fa0bc4d281e32160b 497 Gene3D G3DSA:3.30.2010.10 70 152 3.0E-6 T 12-10-2018 ALFP_2802 ec1afce73135f67fa0bc4d281e32160b 497 SUPERFAMILY SSF48452 270 464 4.36E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2802 ec1afce73135f67fa0bc4d281e32160b 497 Pfam PF14559 Tetratricopeptide repeat 360 426 3.6E-11 T 12-10-2018 ALFP_2802 ec1afce73135f67fa0bc4d281e32160b 497 Gene3D G3DSA:1.25.40.10 268 494 1.9E-13 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2802 ec1afce73135f67fa0bc4d281e32160b 497 Pfam PF01435 Peptidase family M48 73 261 4.9E-31 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 ALFP_1744 6126471367f2a8886ebe6cf7876ab87d 393 Gene3D G3DSA:3.30.70.360 181 284 1.8E-18 T 12-10-2018 ALFP_1744 6126471367f2a8886ebe6cf7876ab87d 393 Pfam PF07687 Peptidase dimerisation domain 173 276 1.0E-12 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain ALFP_1744 6126471367f2a8886ebe6cf7876ab87d 393 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 72 81 - T 12-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 ALFP_1744 6126471367f2a8886ebe6cf7876ab87d 393 Gene3D G3DSA:3.40.630.10 12 180 2.0E-34 T 12-10-2018 ALFP_1744 6126471367f2a8886ebe6cf7876ab87d 393 SUPERFAMILY SSF53187 14 390 1.2E-51 T 12-10-2018 ALFP_1744 6126471367f2a8886ebe6cf7876ab87d 393 Pfam PF01546 Peptidase family M20/M25/M40 73 385 7.0E-30 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 ALFP_1744 6126471367f2a8886ebe6cf7876ab87d 393 SUPERFAMILY SSF55031 178 277 4.06E-17 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain ALFP_1744 6126471367f2a8886ebe6cf7876ab87d 393 Gene3D G3DSA:3.40.630.10 285 393 4.2E-15 T 12-10-2018 ALFP_0235 377d85ba2b21c1ede7b5964e5bebb368 313 Gene3D G3DSA:3.40.50.170 1 213 7.7E-79 T 12-10-2018 ALFP_0235 377d85ba2b21c1ede7b5964e5bebb368 313 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 140 163 - T 12-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ALFP_0235 377d85ba2b21c1ede7b5964e5bebb368 313 SUPERFAMILY SSF53328 1 214 1.96E-65 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ALFP_0235 377d85ba2b21c1ede7b5964e5bebb368 313 Pfam PF02911 Formyl transferase, C-terminal domain 211 309 1.6E-23 T 12-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ALFP_0235 377d85ba2b21c1ede7b5964e5bebb368 313 Pfam PF00551 Formyl transferase 1 188 9.5E-40 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ALFP_0235 377d85ba2b21c1ede7b5964e5bebb368 313 SUPERFAMILY SSF50486 212 311 2.16E-25 T 12-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 ALFP_0235 377d85ba2b21c1ede7b5964e5bebb368 313 Gene3D G3DSA:3.10.25.10 214 313 1.6E-25 T 12-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ALFP_0235 377d85ba2b21c1ede7b5964e5bebb368 313 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 310 2.5E-91 T 12-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 ALFP_0235 377d85ba2b21c1ede7b5964e5bebb368 313 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 313 35.239 T 12-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 ALFP_1152 eb7420c93d777dfc484896bb7b68224d 499 Pfam PF01565 FAD binding domain 56 192 1.2E-38 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 ALFP_1152 eb7420c93d777dfc484896bb7b68224d 499 Pfam PF02913 FAD linked oxidases, C-terminal domain 232 470 3.2E-70 T 12-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 ALFP_1152 eb7420c93d777dfc484896bb7b68224d 499 TIGRFAM TIGR00387 glcD: glycolate oxidase, subunit GlcD 59 470 7.3E-174 T 12-10-2018 IPR004490 Glycolate oxidase subunit GlcD GO:0008891|GO:0009339 ALFP_1152 eb7420c93d777dfc484896bb7b68224d 499 Gene3D G3DSA:3.30.70.2740 351 431 3.1E-7 T 12-10-2018 ALFP_1152 eb7420c93d777dfc484896bb7b68224d 499 SUPERFAMILY SSF55103 204 474 2.29E-76 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 ALFP_1152 eb7420c93d777dfc484896bb7b68224d 499 SUPERFAMILY SSF56176 20 231 1.68E-64 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 ALFP_1152 eb7420c93d777dfc484896bb7b68224d 499 Gene3D G3DSA:3.30.465.40 30 251 4.8E-62 T 12-10-2018 ALFP_1152 eb7420c93d777dfc484896bb7b68224d 499 Gene3D G3DSA:1.10.45.10 432 472 4.5E-8 T 12-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 ALFP_0773 6ea131ea6796c9c679b22b021971dffd 271 PIRSF PIRSF003092 1 271 6.8E-90 T 12-10-2018 IPR025501 ATP binding protein MinD ALFP_0773 6ea131ea6796c9c679b22b021971dffd 271 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 227 8.9E-17 T 12-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain ALFP_0773 6ea131ea6796c9c679b22b021971dffd 271 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 2.4E-103 T 12-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 ALFP_0773 6ea131ea6796c9c679b22b021971dffd 271 SUPERFAMILY SSF52540 1 269 4.68E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0773 6ea131ea6796c9c679b22b021971dffd 271 Gene3D G3DSA:3.40.50.300 1 260 8.3E-70 T 12-10-2018 ALFP_0848 6230d2f94f013ac1eca7fdc6824ed15c 455 SMART SM00646 287 442 2.0E-58 T 12-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 ALFP_0848 6230d2f94f013ac1eca7fdc6824ed15c 455 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 227 442 4.3E-48 T 12-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 ALFP_0848 6230d2f94f013ac1eca7fdc6824ed15c 455 Gene3D G3DSA:2.60.40.3500 37 153 5.1E-32 T 12-10-2018 ALFP_0848 6230d2f94f013ac1eca7fdc6824ed15c 455 Pfam PF11741 AMIN domain 47 150 1.4E-24 T 12-10-2018 IPR021731 AMIN domain ALFP_0848 6230d2f94f013ac1eca7fdc6824ed15c 455 Gene3D G3DSA:3.40.630.40 215 454 3.2E-80 T 12-10-2018 ALFP_0848 6230d2f94f013ac1eca7fdc6824ed15c 455 SUPERFAMILY SSF53187 225 445 2.42E-55 T 12-10-2018 ALFP_2097 aca0ce403e214a38b060e0689802de22 320 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 11 215 4.4E-74 T 12-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 ALFP_2097 aca0ce403e214a38b060e0689802de22 320 PIRSF PIRSF001438 1 317 5.5E-116 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 ALFP_2097 aca0ce403e214a38b060e0689802de22 320 SUPERFAMILY SSF54782 226 314 6.54E-26 T 12-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 ALFP_2097 aca0ce403e214a38b060e0689802de22 320 SUPERFAMILY SSF53850 10 223 5.21E-78 T 12-10-2018 ALFP_2097 aca0ce403e214a38b060e0689802de22 320 PRINTS PR00151 Porphobilinogen deaminase signature 81 100 2.1E-45 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 ALFP_2097 aca0ce403e214a38b060e0689802de22 320 PRINTS PR00151 Porphobilinogen deaminase signature 129 146 2.1E-45 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 ALFP_2097 aca0ce403e214a38b060e0689802de22 320 PRINTS PR00151 Porphobilinogen deaminase signature 235 252 2.1E-45 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 ALFP_2097 aca0ce403e214a38b060e0689802de22 320 PRINTS PR00151 Porphobilinogen deaminase signature 50 70 2.1E-45 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 ALFP_2097 aca0ce403e214a38b060e0689802de22 320 PRINTS PR00151 Porphobilinogen deaminase signature 148 165 2.1E-45 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 ALFP_2097 aca0ce403e214a38b060e0689802de22 320 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 10 302 37.12 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 ALFP_2097 aca0ce403e214a38b060e0689802de22 320 Gene3D G3DSA:3.40.190.10 12 211 9.8E-80 T 12-10-2018 ALFP_2097 aca0ce403e214a38b060e0689802de22 320 Gene3D G3DSA:3.40.190.10 108 207 9.8E-80 T 12-10-2018 ALFP_2097 aca0ce403e214a38b060e0689802de22 320 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 11 302 1.1E-106 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 ALFP_2097 aca0ce403e214a38b060e0689802de22 320 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 232 300 9.2E-20 T 12-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 ALFP_2097 aca0ce403e214a38b060e0689802de22 320 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 236 252 - T 12-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 ALFP_2097 aca0ce403e214a38b060e0689802de22 320 Gene3D G3DSA:3.30.160.40 226 311 3.1E-26 T 12-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 ALFP_2473 94994a672b4d06a031530907ad2cad6f 382 Gene3D G3DSA:1.20.1720.10 1 374 1.6E-100 T 12-10-2018 ALFP_2473 94994a672b4d06a031530907ad2cad6f 382 Pfam PF07690 Major Facilitator Superfamily 3 344 7.9E-39 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_2473 94994a672b4d06a031530907ad2cad6f 382 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 2 373 1.4E-92 T 12-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 ALFP_2473 94994a672b4d06a031530907ad2cad6f 382 SUPERFAMILY SSF103473 2 376 2.62E-55 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_1905 99e108a220c1962ae98864527aabefde 112 SUPERFAMILY SSF46626 32 106 1.77E-16 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1905 99e108a220c1962ae98864527aabefde 112 Gene3D G3DSA:1.10.760.10 29 108 1.3E-25 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1905 99e108a220c1962ae98864527aabefde 112 PRINTS PR00606 Class ID cytochrome C signature 85 95 5.7E-17 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 ALFP_1905 99e108a220c1962ae98864527aabefde 112 PRINTS PR00606 Class ID cytochrome C signature 70 83 5.7E-17 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 ALFP_1905 99e108a220c1962ae98864527aabefde 112 PRINTS PR00606 Class ID cytochrome C signature 32 45 5.7E-17 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 ALFP_1905 99e108a220c1962ae98864527aabefde 112 PRINTS PR00606 Class ID cytochrome C signature 47 60 5.7E-17 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 ALFP_1905 99e108a220c1962ae98864527aabefde 112 PRINTS PR00606 Class ID cytochrome C signature 97 107 5.7E-17 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 ALFP_1905 99e108a220c1962ae98864527aabefde 112 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 35 105 4.3E-7 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2153 f40419914e56811254ab5d1634a2a65e 260 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 3 237 4.3E-87 T 12-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 ALFP_2153 f40419914e56811254ab5d1634a2a65e 260 SUPERFAMILY SSF53790 1 240 2.22E-74 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 ALFP_2153 f40419914e56811254ab5d1634a2a65e 260 Gene3D G3DSA:3.30.950.10 119 243 2.1E-41 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 ALFP_2153 f40419914e56811254ab5d1634a2a65e 260 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 83 116 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 ALFP_2153 f40419914e56811254ab5d1634a2a65e 260 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 8 22 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 ALFP_2153 f40419914e56811254ab5d1634a2a65e 260 Gene3D G3DSA:3.40.1010.10 1 118 5.8E-41 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 ALFP_2153 f40419914e56811254ab5d1634a2a65e 260 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 215 4.4E-45 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 ALFP_1389 bca8e93037116d236cc6eac54785da0d 338 Gene3D G3DSA:3.40.190.10 130 320 5.2E-57 T 12-10-2018 ALFP_1389 bca8e93037116d236cc6eac54785da0d 338 Gene3D G3DSA:3.40.190.10 44 306 5.2E-57 T 12-10-2018 ALFP_1389 bca8e93037116d236cc6eac54785da0d 338 Pfam PF13343 Bacterial extracellular solute-binding protein 77 324 1.9E-50 T 12-10-2018 ALFP_1389 bca8e93037116d236cc6eac54785da0d 338 SUPERFAMILY SSF53850 37 329 7.25E-64 T 12-10-2018 ALFP_1162 29f106a9ebf8748d3a5674d32a52d077 306 SUPERFAMILY SSF103481 213 305 8.11E-10 T 12-10-2018 ALFP_1162 29f106a9ebf8748d3a5674d32a52d077 306 Pfam PF00892 EamA-like transporter family 169 304 4.5E-14 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_1162 29f106a9ebf8748d3a5674d32a52d077 306 Pfam PF00892 EamA-like transporter family 23 156 1.7E-16 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_1162 29f106a9ebf8748d3a5674d32a52d077 306 SUPERFAMILY SSF103481 51 159 1.7E-13 T 12-10-2018 ALFP_0828 91faa3e78e283454efa1dd6a99286fa0 710 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 55 67 5.6E-30 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ALFP_0828 91faa3e78e283454efa1dd6a99286fa0 710 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 410 429 5.6E-30 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ALFP_0828 91faa3e78e283454efa1dd6a99286fa0 710 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 10 23 5.6E-30 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ALFP_0828 91faa3e78e283454efa1dd6a99286fa0 710 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 261 276 5.6E-30 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ALFP_0828 91faa3e78e283454efa1dd6a99286fa0 710 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 334 350 5.6E-30 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ALFP_0828 91faa3e78e283454efa1dd6a99286fa0 710 SUPERFAMILY SSF109604 367 503 1.67E-11 T 12-10-2018 ALFP_0828 91faa3e78e283454efa1dd6a99286fa0 710 Pfam PF05746 DALR anticodon binding domain 603 701 3.8E-9 T 12-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 ALFP_0828 91faa3e78e283454efa1dd6a99286fa0 710 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 6 708 21.927 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ALFP_0828 91faa3e78e283454efa1dd6a99286fa0 710 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 9 573 1.1E-172 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ALFP_0828 91faa3e78e283454efa1dd6a99286fa0 710 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 6 708 1.9E-171 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ALFP_0828 91faa3e78e283454efa1dd6a99286fa0 710 SMART SM00836 606 708 0.0057 T 12-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 ALFP_2697 78a392d4eac40cb3aa09c1599a415f85 452 SUPERFAMILY SSF50022 11 157 2.88E-51 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_2697 78a392d4eac40cb3aa09c1599a415f85 452 SUPERFAMILY SSF55961 159 440 1.26E-62 T 12-10-2018 ALFP_2697 78a392d4eac40cb3aa09c1599a415f85 452 Gene3D G3DSA:2.102.10.10 41 170 6.5E-155 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_2697 78a392d4eac40cb3aa09c1599a415f85 452 Gene3D G3DSA:3.90.380.10 16 431 6.5E-155 T 12-10-2018 ALFP_2697 78a392d4eac40cb3aa09c1599a415f85 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 26 51 3.8E-62 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2697 78a392d4eac40cb3aa09c1599a415f85 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 56 71 3.8E-62 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2697 78a392d4eac40cb3aa09c1599a415f85 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 77 97 3.8E-62 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2697 78a392d4eac40cb3aa09c1599a415f85 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 142 168 3.8E-62 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2697 78a392d4eac40cb3aa09c1599a415f85 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 98 118 3.8E-62 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2697 78a392d4eac40cb3aa09c1599a415f85 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 183 205 3.8E-62 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2697 78a392d4eac40cb3aa09c1599a415f85 452 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 162 431 1.6E-42 T 12-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 ALFP_2697 78a392d4eac40cb3aa09c1599a415f85 452 Pfam PF00355 Rieske [2Fe-2S] domain 41 124 7.5E-23 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ALFP_1945 1a00131e9f68d5ee9aa58a87799cd83c 335 Gene3D G3DSA:1.10.8.1150 38 113 2.8E-6 T 12-10-2018 ALFP_1945 1a00131e9f68d5ee9aa58a87799cd83c 335 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 11 335 33.241 T 12-10-2018 IPR003770 Endolytic murein transglycosylase ALFP_1945 1a00131e9f68d5ee9aa58a87799cd83c 335 Pfam PF02618 YceG-like family 45 330 1.6E-79 T 12-10-2018 IPR003770 Endolytic murein transglycosylase ALFP_1945 1a00131e9f68d5ee9aa58a87799cd83c 335 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 10 332 8.5E-86 T 12-10-2018 IPR003770 Endolytic murein transglycosylase ALFP_1945 1a00131e9f68d5ee9aa58a87799cd83c 335 Gene3D G3DSA:3.30.160.60 303 335 2.8E-9 T 12-10-2018 ALFP_0243 9fc1fd520ab24205973c70e1e450454f 299 SUPERFAMILY SSF53850 89 295 5.43E-35 T 12-10-2018 ALFP_0243 9fc1fd520ab24205973c70e1e450454f 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.0E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0243 9fc1fd520ab24205973c70e1e450454f 299 Pfam PF03466 LysR substrate binding domain 88 289 8.5E-34 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0243 9fc1fd520ab24205973c70e1e450454f 299 Gene3D G3DSA:3.40.190.10 92 273 3.8E-26 T 12-10-2018 ALFP_0243 9fc1fd520ab24205973c70e1e450454f 299 Gene3D G3DSA:1.10.10.10 1 91 4.5E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0243 9fc1fd520ab24205973c70e1e450454f 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 6.7E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0243 9fc1fd520ab24205973c70e1e450454f 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 6.7E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0243 9fc1fd520ab24205973c70e1e450454f 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 6.7E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0243 9fc1fd520ab24205973c70e1e450454f 299 SUPERFAMILY SSF46785 1 111 1.82E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0243 9fc1fd520ab24205973c70e1e450454f 299 Gene3D G3DSA:3.40.190.10 164 266 3.8E-26 T 12-10-2018 ALFP_3141 8d5fb281b42fd48cf3ad54e1e5e1a881 195 Pfam PF13488 Glycine zipper 12 52 8.1E-7 T 12-10-2018 IPR039567 Glycine zipper domain ALFP_3141 8d5fb281b42fd48cf3ad54e1e5e1a881 195 Gene3D G3DSA:3.30.1330.60 55 194 7.1E-39 T 12-10-2018 IPR036737 OmpA-like domain superfamily ALFP_3141 8d5fb281b42fd48cf3ad54e1e5e1a881 195 PRINTS PR01021 OMPA domain signature 90 112 7.7E-10 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 ALFP_3141 8d5fb281b42fd48cf3ad54e1e5e1a881 195 PRINTS PR01021 OMPA domain signature 135 151 7.7E-10 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 ALFP_3141 8d5fb281b42fd48cf3ad54e1e5e1a881 195 PRINTS PR01021 OMPA domain signature 120 135 7.7E-10 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 ALFP_3141 8d5fb281b42fd48cf3ad54e1e5e1a881 195 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 135 152 1.6E-5 T 12-10-2018 ALFP_3141 8d5fb281b42fd48cf3ad54e1e5e1a881 195 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 153 172 1.6E-5 T 12-10-2018 ALFP_3141 8d5fb281b42fd48cf3ad54e1e5e1a881 195 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 173 193 1.6E-5 T 12-10-2018 ALFP_3141 8d5fb281b42fd48cf3ad54e1e5e1a881 195 SUPERFAMILY SSF103088 77 190 8.5E-36 T 12-10-2018 IPR036737 OmpA-like domain superfamily ALFP_3141 8d5fb281b42fd48cf3ad54e1e5e1a881 195 Pfam PF00691 OmpA family 90 184 1.9E-20 T 12-10-2018 IPR006665 OmpA-like domain ALFP_1497 b89d7020a4485e49df00f12f9240fe0d 570 Gene3D G3DSA:3.90.1640.30 52 329 9.5E-85 T 12-10-2018 ALFP_1497 b89d7020a4485e49df00f12f9240fe0d 570 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 26 564 2.1E-146 T 12-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 ALFP_1497 b89d7020a4485e49df00f12f9240fe0d 570 SUPERFAMILY SSF64182 51 462 6.67E-115 T 12-10-2018 IPR038763 DHH phosphoesterase superfamily ALFP_1497 b89d7020a4485e49df00f12f9240fe0d 570 Pfam PF01368 DHH family 78 212 1.1E-8 T 12-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 ALFP_1497 b89d7020a4485e49df00f12f9240fe0d 570 Gene3D G3DSA:3.10.310.30 330 455 8.1E-32 T 12-10-2018 ALFP_1497 b89d7020a4485e49df00f12f9240fe0d 570 Gene3D G3DSA:2.40.50.460 456 569 1.7E-8 T 12-10-2018 ALFP_1497 b89d7020a4485e49df00f12f9240fe0d 570 Pfam PF02272 DHHA1 domain 325 453 3.3E-26 T 12-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 ALFP_1614 ca6d42536de390cd2a1c3119fb0ecc30 369 Pfam PF00850 Histone deacetylase domain 47 327 1.1E-77 T 12-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 ALFP_1614 ca6d42536de390cd2a1c3119fb0ecc30 369 Gene3D G3DSA:3.40.800.20 1 369 1.1E-142 T 12-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 ALFP_1614 ca6d42536de390cd2a1c3119fb0ecc30 369 SUPERFAMILY SSF52768 3 331 4.27E-98 T 12-10-2018 IPR023696 Ureohydrolase domain superfamily ALFP_1614 ca6d42536de390cd2a1c3119fb0ecc30 369 PRINTS PR01270 Histone deacetylase superfamily signature 258 268 1.3E-14 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 ALFP_1614 ca6d42536de390cd2a1c3119fb0ecc30 369 PRINTS PR01270 Histone deacetylase superfamily signature 139 162 1.3E-14 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 ALFP_1614 ca6d42536de390cd2a1c3119fb0ecc30 369 PRINTS PR01270 Histone deacetylase superfamily signature 173 188 1.3E-14 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 ALFP_1910 24134fa459bd5ba749ed39060166eabd 507 SUPERFAMILY SSF51905 3 367 8.77E-63 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1910 24134fa459bd5ba749ed39060166eabd 507 Gene3D G3DSA:3.40.30.120 389 490 3.3E-17 T 12-10-2018 ALFP_1910 24134fa459bd5ba749ed39060166eabd 507 Pfam PF01494 FAD binding domain 3 336 4.5E-83 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 ALFP_1910 24134fa459bd5ba749ed39060166eabd 507 Gene3D G3DSA:3.50.50.60 5 335 4.5E-109 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1910 24134fa459bd5ba749ed39060166eabd 507 Gene3D G3DSA:3.30.70.2450 177 261 4.5E-109 T 12-10-2018 ALFP_1910 24134fa459bd5ba749ed39060166eabd 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 305 323 4.9E-41 T 12-10-2018 ALFP_1910 24134fa459bd5ba749ed39060166eabd 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 323 339 4.9E-41 T 12-10-2018 ALFP_1910 24134fa459bd5ba749ed39060166eabd 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 4.9E-41 T 12-10-2018 ALFP_1910 24134fa459bd5ba749ed39060166eabd 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 148 163 4.9E-41 T 12-10-2018 ALFP_1910 24134fa459bd5ba749ed39060166eabd 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 272 287 4.9E-41 T 12-10-2018 ALFP_1910 24134fa459bd5ba749ed39060166eabd 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 287 303 4.9E-41 T 12-10-2018 ALFP_0579 55540a1089eabdd7184a85fe423b68e5 266 Pfam PF00303 Thymidylate synthase 6 266 1.9E-124 T 12-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 ALFP_0579 55540a1089eabdd7184a85fe423b68e5 266 ProSitePatterns PS00091 Thymidylate synthase active site. 128 156 - T 12-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 ALFP_0579 55540a1089eabdd7184a85fe423b68e5 266 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 87 266 6.7E-99 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 ALFP_0579 55540a1089eabdd7184a85fe423b68e5 266 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 6 86 1.5E-37 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 ALFP_0579 55540a1089eabdd7184a85fe423b68e5 266 Hamap MF_00008 Thymidylate synthase [thyA]. 3 266 39.522 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 ALFP_0579 55540a1089eabdd7184a85fe423b68e5 266 PRINTS PR00108 Thymidylate synthase family signature 143 158 2.0E-47 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 ALFP_0579 55540a1089eabdd7184a85fe423b68e5 266 PRINTS PR00108 Thymidylate synthase family signature 161 187 2.0E-47 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 ALFP_0579 55540a1089eabdd7184a85fe423b68e5 266 PRINTS PR00108 Thymidylate synthase family signature 44 65 2.0E-47 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 ALFP_0579 55540a1089eabdd7184a85fe423b68e5 266 PRINTS PR00108 Thymidylate synthase family signature 117 136 2.0E-47 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 ALFP_0579 55540a1089eabdd7184a85fe423b68e5 266 PRINTS PR00108 Thymidylate synthase family signature 199 216 2.0E-47 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 ALFP_0579 55540a1089eabdd7184a85fe423b68e5 266 SUPERFAMILY SSF55831 5 266 1.14E-128 T 12-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 ALFP_0579 55540a1089eabdd7184a85fe423b68e5 266 Gene3D G3DSA:3.30.572.10 4 266 4.2E-130 T 12-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 ALFP_1768 161c888c409dc13a095dfd8e431ecc8c 73 Gene3D G3DSA:3.30.50.20 4 68 4.5E-9 T 12-10-2018 ALFP_3379 71439934aa425fb270b49fdc5bc64d4f 301 Gene3D G3DSA:3.40.50.2000 123 301 1.5E-20 T 12-10-2018 ALFP_3379 71439934aa425fb270b49fdc5bc64d4f 301 SUPERFAMILY SSF53756 105 299 5.34E-24 T 12-10-2018 ALFP_3379 71439934aa425fb270b49fdc5bc64d4f 301 Pfam PF00534 Glycosyl transferases group 1 162 283 6.5E-11 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 ALFP_0229 eee88f647190fe04d27d53a017e9af06 426 Pfam PF00501 AMP-binding enzyme 160 291 1.6E-11 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_0229 eee88f647190fe04d27d53a017e9af06 426 SUPERFAMILY SSF56801 129 396 9.68E-31 T 12-10-2018 ALFP_0229 eee88f647190fe04d27d53a017e9af06 426 Gene3D G3DSA:3.30.300.30 331 425 3.0E-14 T 12-10-2018 ALFP_0229 eee88f647190fe04d27d53a017e9af06 426 Gene3D G3DSA:3.40.50.12780 2 330 1.1E-56 T 12-10-2018 ALFP_0846 ae64aeacff3300b5d27d4584eeeebfcf 611 SUPERFAMILY SSF54211 179 314 1.33E-34 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold ALFP_0846 ae64aeacff3300b5d27d4584eeeebfcf 611 Gene3D G3DSA:3.30.565.10 1 198 1.6E-61 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_0846 ae64aeacff3300b5d27d4584eeeebfcf 611 SMART SM01340 196 314 3.3E-51 T 12-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 ALFP_0846 ae64aeacff3300b5d27d4584eeeebfcf 611 SUPERFAMILY SSF55874 2 189 2.49E-45 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_0846 ae64aeacff3300b5d27d4584eeeebfcf 611 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 198 313 5.5E-36 T 12-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 ALFP_0846 ae64aeacff3300b5d27d4584eeeebfcf 611 Gene3D G3DSA:3.30.1370.100 467 562 7.4E-59 T 12-10-2018 ALFP_0846 ae64aeacff3300b5d27d4584eeeebfcf 611 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 2 294 6.3E-87 T 12-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 ALFP_0846 ae64aeacff3300b5d27d4584eeeebfcf 611 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 607 25.785 T 12-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 ALFP_0846 ae64aeacff3300b5d27d4584eeeebfcf 611 Gene3D G3DSA:3.30.230.10 201 313 3.9E-36 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ALFP_0846 ae64aeacff3300b5d27d4584eeeebfcf 611 Gene3D G3DSA:2.30.42.20 426 604 7.4E-59 T 12-10-2018 ALFP_0846 ae64aeacff3300b5d27d4584eeeebfcf 611 SMART SM00853 424 567 1.7E-53 T 12-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 ALFP_0846 ae64aeacff3300b5d27d4584eeeebfcf 611 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 85 91 - T 12-10-2018 IPR014762 DNA mismatch repair, conserved site ALFP_0846 ae64aeacff3300b5d27d4584eeeebfcf 611 Pfam PF08676 MutL C terminal dimerisation domain 420 567 5.2E-49 T 12-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 ALFP_0846 ae64aeacff3300b5d27d4584eeeebfcf 611 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 16 112 8.0E-11 T 12-10-2018 ALFP_0846 ae64aeacff3300b5d27d4584eeeebfcf 611 SUPERFAMILY SSF118116 419 609 4.84E-60 T 12-10-2018 IPR037198 MutL, C-terminal domain superfamily ALFP_2150 c70ece96bfe7a4416486bc13ad261563 69 PIRSF PIRSF002599 1 69 3.7E-20 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 ALFP_2150 c70ece96bfe7a4416486bc13ad261563 69 SUPERFAMILY SSF50249 4 68 3.18E-22 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2150 c70ece96bfe7a4416486bc13ad261563 69 Gene3D G3DSA:2.40.50.140 4 68 4.7E-25 T 12-10-2018 ALFP_2150 c70ece96bfe7a4416486bc13ad261563 69 PRINTS PR00050 Cold shock protein signature 27 36 5.7E-13 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ALFP_2150 c70ece96bfe7a4416486bc13ad261563 69 PRINTS PR00050 Cold shock protein signature 42 60 5.7E-13 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ALFP_2150 c70ece96bfe7a4416486bc13ad261563 69 PRINTS PR00050 Cold shock protein signature 6 21 5.7E-13 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ALFP_2150 c70ece96bfe7a4416486bc13ad261563 69 Pfam PF00313 'Cold-shock' DNA-binding domain 6 67 2.1E-25 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ALFP_2150 c70ece96bfe7a4416486bc13ad261563 69 SMART SM00357 5 69 2.3E-22 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 ALFP_2150 c70ece96bfe7a4416486bc13ad261563 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 12-10-2018 IPR019844 Cold-shock conserved site ALFP_0633 19ec9de7bff2ef12ca8f0d3cb1c6561d 599 PIRSF PIRSF037375 1 599 6.1E-136 T 12-10-2018 IPR017186 Lipase, autotransporter EstA ALFP_0633 19ec9de7bff2ef12ca8f0d3cb1c6561d 599 Gene3D G3DSA:3.40.50.1110 11 296 8.3E-76 T 12-10-2018 IPR036514 SGNH hydrolase superfamily ALFP_0633 19ec9de7bff2ef12ca8f0d3cb1c6561d 599 SUPERFAMILY SSF103515 295 599 4.32E-37 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily ALFP_0633 19ec9de7bff2ef12ca8f0d3cb1c6561d 599 SMART SM00869 326 588 1.5E-31 T 12-10-2018 IPR005546 Autotransporter beta-domain ALFP_0633 19ec9de7bff2ef12ca8f0d3cb1c6561d 599 Pfam PF03797 Autotransporter beta-domain 333 577 2.2E-41 T 12-10-2018 IPR005546 Autotransporter beta-domain ALFP_0633 19ec9de7bff2ef12ca8f0d3cb1c6561d 599 Gene3D G3DSA:2.40.128.130 298 599 9.4E-49 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily ALFP_0633 19ec9de7bff2ef12ca8f0d3cb1c6561d 599 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 26 283 1.1E-6 T 12-10-2018 IPR001087 GDSL lipase/esterase GO:0016788 ALFP_0633 19ec9de7bff2ef12ca8f0d3cb1c6561d 599 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 286 599 2.0E-24 T 12-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 ALFP_0633 19ec9de7bff2ef12ca8f0d3cb1c6561d 599 SUPERFAMILY SSF52266 25 288 2.66E-18 T 12-10-2018 ALFP_0490 08dfe2324b1001b34ceacc28e61724ec 595 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0490 08dfe2324b1001b34ceacc28e61724ec 595 Gene3D G3DSA:3.40.50.300 342 593 1.2E-87 T 12-10-2018 ALFP_0490 08dfe2324b1001b34ceacc28e61724ec 595 Gene3D G3DSA:1.20.1560.10 2 335 5.7E-36 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_0490 08dfe2324b1001b34ceacc28e61724ec 595 Pfam PF00664 ABC transporter transmembrane region 62 280 3.2E-14 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 ALFP_0490 08dfe2324b1001b34ceacc28e61724ec 595 Pfam PF00005 ABC transporter 366 514 1.3E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0490 08dfe2324b1001b34ceacc28e61724ec 595 SUPERFAMILY SSF90123 20 335 7.59E-40 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_0490 08dfe2324b1001b34ceacc28e61724ec 595 SMART SM00382 375 560 2.1E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0490 08dfe2324b1001b34ceacc28e61724ec 595 SUPERFAMILY SSF52540 344 582 7.79E-84 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2104 60719964f94825fd5c72a8eb9157b268 306 Pfam PF03466 LysR substrate binding domain 88 294 2.0E-41 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_2104 60719964f94825fd5c72a8eb9157b268 306 Gene3D G3DSA:3.40.190.10 92 290 7.8E-74 T 12-10-2018 ALFP_2104 60719964f94825fd5c72a8eb9157b268 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 3.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2104 60719964f94825fd5c72a8eb9157b268 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 3.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2104 60719964f94825fd5c72a8eb9157b268 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 3.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2104 60719964f94825fd5c72a8eb9157b268 306 SUPERFAMILY SSF53850 90 294 8.96E-38 T 12-10-2018 ALFP_2104 60719964f94825fd5c72a8eb9157b268 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.8E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2104 60719964f94825fd5c72a8eb9157b268 306 Gene3D G3DSA:3.40.190.10 163 268 7.8E-74 T 12-10-2018 ALFP_2104 60719964f94825fd5c72a8eb9157b268 306 Gene3D G3DSA:1.10.10.10 1 91 1.2E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2104 60719964f94825fd5c72a8eb9157b268 306 SUPERFAMILY SSF46785 1 112 2.25E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1443 f72968f59ef1dfe7a393fcedefc9fd0d 102 PRINTS PR00605 Class IC cytochrome C signature 74 96 6.7E-5 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 ALFP_1443 f72968f59ef1dfe7a393fcedefc9fd0d 102 PRINTS PR00605 Class IC cytochrome C signature 35 46 6.7E-5 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 ALFP_1443 f72968f59ef1dfe7a393fcedefc9fd0d 102 Gene3D G3DSA:1.10.760.10 8 102 5.8E-30 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1443 f72968f59ef1dfe7a393fcedefc9fd0d 102 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 36 96 5.2E-13 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_1443 f72968f59ef1dfe7a393fcedefc9fd0d 102 SUPERFAMILY SSF46626 6 101 2.74E-18 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0776 8dd05986135e9d9b3065ce505d573707 446 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 8 433 1.2E-66 T 12-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 ALFP_0776 8dd05986135e9d9b3065ce505d573707 446 PIRSF PIRSF006446 1 444 4.1E-65 T 12-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 ALFP_3060 ebc01856f25c7e6fe1ab11eda162f30d 333 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 295 2.3E-49 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 ALFP_3060 ebc01856f25c7e6fe1ab11eda162f30d 333 SUPERFAMILY SSF52283 1 137 9.83E-33 T 12-10-2018 ALFP_3060 ebc01856f25c7e6fe1ab11eda162f30d 333 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 148 175 - T 12-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 ALFP_3060 ebc01856f25c7e6fe1ab11eda162f30d 333 Gene3D G3DSA:3.40.50.720 98 301 1.4E-102 T 12-10-2018 ALFP_3060 ebc01856f25c7e6fe1ab11eda162f30d 333 SUPERFAMILY SSF51735 103 295 5.9E-50 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3060 ebc01856f25c7e6fe1ab11eda162f30d 333 Gene3D G3DSA:3.40.50.720 7 321 1.4E-102 T 12-10-2018 ALFP_3060 ebc01856f25c7e6fe1ab11eda162f30d 333 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 226 242 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site ALFP_3060 ebc01856f25c7e6fe1ab11eda162f30d 333 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 6 327 1.5E-27 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 ALFP_2842 25f6481320a7b5256f21fee73efe1c66 224 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 7 224 39.375 T 12-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 ALFP_2842 25f6481320a7b5256f21fee73efe1c66 224 Pfam PF01618 MotA/TolQ/ExbB proton channel family 81 209 5.1E-41 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel ALFP_2842 25f6481320a7b5256f21fee73efe1c66 224 TIGRFAM TIGR02796 tolQ: protein TolQ 8 221 3.3E-82 T 12-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 ALFP_0958 b95524e81b0a811205782512f29ee2fb 311 Gene3D G3DSA:3.40.190.290 99 303 2.3E-34 T 12-10-2018 ALFP_0958 b95524e81b0a811205782512f29ee2fb 311 Pfam PF03466 LysR substrate binding domain 97 297 6.4E-32 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0958 b95524e81b0a811205782512f29ee2fb 311 SUPERFAMILY SSF53850 97 297 2.48E-29 T 12-10-2018 ALFP_0958 b95524e81b0a811205782512f29ee2fb 311 SUPERFAMILY SSF46785 8 117 7.14E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0958 b95524e81b0a811205782512f29ee2fb 311 Gene3D G3DSA:1.10.10.10 4 91 1.3E-12 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0958 b95524e81b0a811205782512f29ee2fb 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 64 1.7E-11 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1674 c69a7dd098bab05addf06d0ef2f38978 444 Gene3D G3DSA:1.20.1250.20 17 430 1.6E-76 T 12-10-2018 ALFP_1674 c69a7dd098bab05addf06d0ef2f38978 444 ProSitePatterns PS00217 Sugar transport proteins signature 2. 118 143 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ALFP_1674 c69a7dd098bab05addf06d0ef2f38978 444 Pfam PF07690 Major Facilitator Superfamily 27 314 2.3E-37 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_1674 c69a7dd098bab05addf06d0ef2f38978 444 SUPERFAMILY SSF103473 7 428 7.98E-84 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_3225 79fc7425592fc6c485c85490a29adb2f 564 ProSitePatterns PS00211 ABC transporters family signature. 475 489 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3225 79fc7425592fc6c485c85490a29adb2f 564 Gene3D G3DSA:1.20.1560.10 1 325 1.3E-23 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_3225 79fc7425592fc6c485c85490a29adb2f 564 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 11 532 1.4E-113 T 12-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 ALFP_3225 79fc7425592fc6c485c85490a29adb2f 564 Pfam PF00005 ABC transporter 354 503 2.6E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3225 79fc7425592fc6c485c85490a29adb2f 564 Gene3D G3DSA:3.40.50.300 331 563 1.3E-63 T 12-10-2018 ALFP_3225 79fc7425592fc6c485c85490a29adb2f 564 SUPERFAMILY SSF52540 331 553 1.45E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3225 79fc7425592fc6c485c85490a29adb2f 564 Pfam PF00664 ABC transporter transmembrane region 77 275 2.7E-10 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 ALFP_3225 79fc7425592fc6c485c85490a29adb2f 564 SMART SM00382 363 549 2.5E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3225 79fc7425592fc6c485c85490a29adb2f 564 SUPERFAMILY SSF90123 10 322 9.03E-32 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 ALFP_2751 2d9e54ff850d1b4c8ad6b0ca813a2f48 202 Gene3D G3DSA:1.10.760.10 35 191 1.6E-42 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2751 2d9e54ff850d1b4c8ad6b0ca813a2f48 202 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 3 146 2.3E-31 T 12-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO ALFP_2751 2d9e54ff850d1b4c8ad6b0ca813a2f48 202 SUPERFAMILY SSF46626 13 187 3.45E-19 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1680 5232c814b956723ebbba4b06ce8eb5a1 476 Gene3D G3DSA:3.20.20.140 75 367 3.3E-98 T 12-10-2018 ALFP_1680 5232c814b956723ebbba4b06ce8eb5a1 476 SUPERFAMILY SSF51556 74 374 2.19E-63 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_1680 5232c814b956723ebbba4b06ce8eb5a1 476 Pfam PF01979 Amidohydrolase family 72 422 4.0E-41 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 ALFP_1680 5232c814b956723ebbba4b06ce8eb5a1 476 SUPERFAMILY SSF51338 30 86 4.68E-12 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_1680 5232c814b956723ebbba4b06ce8eb5a1 476 Gene3D G3DSA:2.30.40.10 34 441 3.3E-98 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_1680 5232c814b956723ebbba4b06ce8eb5a1 476 SUPERFAMILY SSF51338 355 450 3.32E-20 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_2047 00393da66401df8bbf7a15abd51c0d7b 320 Gene3D G3DSA:3.50.30.60 176 310 4.0E-42 T 12-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily ALFP_2047 00393da66401df8bbf7a15abd51c0d7b 320 SUPERFAMILY SSF52317 25 173 3.8E-31 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_2047 00393da66401df8bbf7a15abd51c0d7b 320 Pfam PF02016 LD-carboxypeptidase 28 302 5.0E-69 T 12-10-2018 IPR003507 Peptidase family S66 ALFP_2047 00393da66401df8bbf7a15abd51c0d7b 320 PIRSF PIRSF028757 22 319 1.8E-65 T 12-10-2018 IPR003507 Peptidase family S66 ALFP_2047 00393da66401df8bbf7a15abd51c0d7b 320 Gene3D G3DSA:3.40.50.10740 23 171 9.7E-34 T 12-10-2018 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal ALFP_2047 00393da66401df8bbf7a15abd51c0d7b 320 SUPERFAMILY SSF141986 157 309 1.44E-38 T 12-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily ALFP_2213 cd237f1c310f9aa8374e154b2dcbb50b 577 Gene3D G3DSA:3.40.1360.10 147 273 4.4E-42 T 12-10-2018 ALFP_2213 cd237f1c310f9aa8374e154b2dcbb50b 577 Pfam PF10410 DnaB-helicase binding domain of primase 275 324 8.8E-8 T 12-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 ALFP_2213 cd237f1c310f9aa8374e154b2dcbb50b 577 Gene3D G3DSA:1.10.860.10 431 566 3.6E-5 T 12-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal ALFP_2213 cd237f1c310f9aa8374e154b2dcbb50b 577 TIGRFAM TIGR01391 dnaG: DNA primase 17 323 5.6E-90 T 12-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 ALFP_2213 cd237f1c310f9aa8374e154b2dcbb50b 577 Pfam PF13662 Toprim domain 166 231 1.2E-15 T 12-10-2018 IPR006171 TOPRIM domain ALFP_2213 cd237f1c310f9aa8374e154b2dcbb50b 577 SUPERFAMILY SSF56731 28 325 1.96E-97 T 12-10-2018 ALFP_2213 cd237f1c310f9aa8374e154b2dcbb50b 577 Pfam PF08275 DNA primase catalytic core, N-terminal domain 38 156 7.1E-36 T 12-10-2018 IPR013264 DNA primase, catalytic core, N-terminal ALFP_2213 cd237f1c310f9aa8374e154b2dcbb50b 577 Pfam PF08278 DNA primase DnaG DnaB-binding 440 561 1.6E-13 T 12-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 ALFP_2213 cd237f1c310f9aa8374e154b2dcbb50b 577 Gene3D G3DSA:3.90.980.10 17 146 1.9E-35 T 12-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily ALFP_2213 cd237f1c310f9aa8374e154b2dcbb50b 577 SMART SM00493 165 236 1.4E-18 T 12-10-2018 IPR006171 TOPRIM domain ALFP_2213 cd237f1c310f9aa8374e154b2dcbb50b 577 SMART SM00766 438 562 1.6E-10 T 12-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 ALFP_2213 cd237f1c310f9aa8374e154b2dcbb50b 577 SUPERFAMILY SSF117023 439 563 1.44E-10 T 12-10-2018 ALFP_2399 f2426e842f39f476e66d3c9ee1e8a70d 112 SUPERFAMILY SSF54913 1 112 3.5E-43 T 12-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta ALFP_2399 f2426e842f39f476e66d3c9ee1e8a70d 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 12-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 ALFP_2399 f2426e842f39f476e66d3c9ee1e8a70d 112 SMART SM00938 4 105 5.5E-65 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ALFP_2399 f2426e842f39f476e66d3c9ee1e8a70d 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 12-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 ALFP_2399 f2426e842f39f476e66d3c9ee1e8a70d 112 PRINTS PR00340 P-II protein signature 23 41 1.2E-40 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ALFP_2399 f2426e842f39f476e66d3c9ee1e8a70d 112 PRINTS PR00340 P-II protein signature 52 75 1.2E-40 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ALFP_2399 f2426e842f39f476e66d3c9ee1e8a70d 112 PRINTS PR00340 P-II protein signature 83 103 1.2E-40 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ALFP_2399 f2426e842f39f476e66d3c9ee1e8a70d 112 PRINTS PR00340 P-II protein signature 2 17 1.2E-40 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ALFP_2399 f2426e842f39f476e66d3c9ee1e8a70d 112 Gene3D G3DSA:3.30.70.120 1 112 1.4E-43 T 12-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal ALFP_2399 f2426e842f39f476e66d3c9ee1e8a70d 112 PIRSF PIRSF039144 1 112 3.2E-52 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ALFP_2399 f2426e842f39f476e66d3c9ee1e8a70d 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 6.3E-41 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ALFP_1936 66b3ce9938803001640952eca6d821f3 190 Gene3D G3DSA:2.40.128.110 23 190 1.8E-45 T 12-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily ALFP_1936 66b3ce9938803001640952eca6d821f3 190 Pfam PF04264 YceI-like domain 25 187 2.6E-35 T 12-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like ALFP_1936 66b3ce9938803001640952eca6d821f3 190 SUPERFAMILY SSF101874 24 189 1.57E-48 T 12-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily ALFP_1936 66b3ce9938803001640952eca6d821f3 190 SMART SM00867 24 188 1.5E-57 T 12-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like ALFP_1280 bc794c91a1ee1b34b5e329bd871769dd 114 SUPERFAMILY SSF82057 44 114 1.83E-20 T 12-10-2018 ALFP_1280 bc794c91a1ee1b34b5e329bd871769dd 114 Pfam PF03831 PhnA domain 49 114 9.6E-25 T 12-10-2018 IPR013988 PhnA protein, C-terminal ALFP_1280 bc794c91a1ee1b34b5e329bd871769dd 114 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 6 114 4.1E-42 T 12-10-2018 IPR004624 PhnA protein ALFP_1280 bc794c91a1ee1b34b5e329bd871769dd 114 Gene3D G3DSA:2.20.25.10 1 42 9.0E-13 T 12-10-2018 ALFP_1280 bc794c91a1ee1b34b5e329bd871769dd 114 SUPERFAMILY SSF57783 6 34 7.53E-10 T 12-10-2018 ALFP_1280 bc794c91a1ee1b34b5e329bd871769dd 114 Gene3D G3DSA:2.30.30.40 46 114 3.6E-26 T 12-10-2018 ALFP_1280 bc794c91a1ee1b34b5e329bd871769dd 114 Pfam PF08274 PhnA Zinc-Ribbon 6 32 1.9E-9 T 12-10-2018 IPR013987 PhnA protein, N-terminal ALFP_2917 8268c99d7e65657446afd231d7265682 182 SUPERFAMILY SSF48452 6 178 9.86E-65 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2917 8268c99d7e65657446afd231d7265682 182 Pfam PF06041 Bacterial protein of unknown function (DUF924) 11 179 2.4E-56 T 12-10-2018 IPR010323 Protein of unknown function DUF924 ALFP_2917 8268c99d7e65657446afd231d7265682 182 Gene3D G3DSA:1.20.58.320 2 82 3.7E-29 T 12-10-2018 ALFP_2917 8268c99d7e65657446afd231d7265682 182 Gene3D G3DSA:1.25.40.10 83 182 3.5E-35 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_0859 590b6d32a63654b0a2dabf7ef4291c6c 352 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 34 315 3.4E-40 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_0859 590b6d32a63654b0a2dabf7ef4291c6c 352 Gene3D G3DSA:3.40.190.170 29 291 2.2E-87 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_0859 590b6d32a63654b0a2dabf7ef4291c6c 352 Gene3D G3DSA:3.40.190.10 148 318 2.2E-87 T 12-10-2018 ALFP_0859 590b6d32a63654b0a2dabf7ef4291c6c 352 PIRSF PIRSF039026 1 350 1.6E-96 T 12-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like ALFP_3460 d0c080f69e3a910e007afed78c679717 444 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 83 106 - T 12-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 ALFP_3460 d0c080f69e3a910e007afed78c679717 444 Gene3D G3DSA:2.102.10.10 40 166 2.1E-112 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_3460 d0c080f69e3a910e007afed78c679717 444 Pfam PF00355 Rieske [2Fe-2S] domain 41 124 3.5E-19 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ALFP_3460 d0c080f69e3a910e007afed78c679717 444 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 184 206 1.9E-38 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_3460 d0c080f69e3a910e007afed78c679717 444 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 142 168 1.9E-38 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_3460 d0c080f69e3a910e007afed78c679717 444 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 76 96 1.9E-38 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_3460 d0c080f69e3a910e007afed78c679717 444 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 97 117 1.9E-38 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_3460 d0c080f69e3a910e007afed78c679717 444 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 55 70 1.9E-38 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_3460 d0c080f69e3a910e007afed78c679717 444 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 25 50 1.9E-38 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_3460 d0c080f69e3a910e007afed78c679717 444 Gene3D G3DSA:3.90.380.10 17 434 2.1E-112 T 12-10-2018 ALFP_3460 d0c080f69e3a910e007afed78c679717 444 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 189 420 7.8E-15 T 12-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 ALFP_3460 d0c080f69e3a910e007afed78c679717 444 SUPERFAMILY SSF50022 11 156 2.1E-45 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_3460 d0c080f69e3a910e007afed78c679717 444 SUPERFAMILY SSF55961 159 437 2.83E-43 T 12-10-2018 ALFP_3307 edaa1bce5624dc08248c8382b31b4d96 288 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 126 140 6.9E-5 T 12-10-2018 ALFP_3307 edaa1bce5624dc08248c8382b31b4d96 288 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 190 202 6.9E-5 T 12-10-2018 ALFP_3307 edaa1bce5624dc08248c8382b31b4d96 288 SUPERFAMILY SSF53335 25 285 4.33E-53 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_3307 edaa1bce5624dc08248c8382b31b4d96 288 Gene3D G3DSA:3.40.50.150 97 287 1.3E-55 T 12-10-2018 ALFP_3307 edaa1bce5624dc08248c8382b31b4d96 288 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 37 284 1.2E-82 T 12-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 ALFP_3307 edaa1bce5624dc08248c8382b31b4d96 288 Gene3D G3DSA:1.10.8.10 19 96 5.0E-18 T 12-10-2018 ALFP_3307 edaa1bce5624dc08248c8382b31b4d96 288 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 33 285 4.9E-70 T 12-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 ALFP_3307 edaa1bce5624dc08248c8382b31b4d96 288 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 193 199 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 ALFP_3307 edaa1bce5624dc08248c8382b31b4d96 288 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 15 288 40.365 T 12-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 ALFP_3307 edaa1bce5624dc08248c8382b31b4d96 288 Pfam PF13847 Methyltransferase domain 125 263 2.0E-15 T 12-10-2018 IPR025714 Methyltransferase domain ALFP_2808 c233e058beb1bd4b02d824a1bf19ea6a 331 Gene3D G3DSA:1.10.1200.80 256 328 8.9E-10 T 12-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 ALFP_2808 c233e058beb1bd4b02d824a1bf19ea6a 331 Gene3D G3DSA:3.20.20.70 7 252 1.4E-74 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_2808 c233e058beb1bd4b02d824a1bf19ea6a 331 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 322 1.0E-117 T 12-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 ALFP_2808 c233e058beb1bd4b02d824a1bf19ea6a 331 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 12-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 ALFP_2808 c233e058beb1bd4b02d824a1bf19ea6a 331 Pfam PF01207 Dihydrouridine synthase (Dus) 14 317 2.7E-98 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 ALFP_2808 c233e058beb1bd4b02d824a1bf19ea6a 331 PIRSF PIRSF006621 1 331 7.5E-102 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 ALFP_2808 c233e058beb1bd4b02d824a1bf19ea6a 331 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 324 48.251 T 12-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 ALFP_2808 c233e058beb1bd4b02d824a1bf19ea6a 331 SUPERFAMILY SSF51395 10 323 1.17E-87 T 12-10-2018 ALFP_0276 5058b77423b06c845198252649fdd9cd 231 Gene3D G3DSA:3.20.20.70 1 229 8.0E-82 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0276 5058b77423b06c845198252649fdd9cd 231 SUPERFAMILY SSF51366 7 222 5.0E-73 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 ALFP_0276 5058b77423b06c845198252649fdd9cd 231 Pfam PF00834 Ribulose-phosphate 3 epimerase family 9 209 1.3E-87 T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 ALFP_0276 5058b77423b06c845198252649fdd9cd 231 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 9 222 1.3E-94 T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 ALFP_0276 5058b77423b06c845198252649fdd9cd 231 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 138 160 - T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 ALFP_0276 5058b77423b06c845198252649fdd9cd 231 PIRSF PIRSF001461 3 231 1.8E-101 T 12-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 ALFP_1958 e2f24096ebe4247f949bb4b723e693a9 260 Pfam PF00588 SpoU rRNA Methylase family 115 252 4.7E-33 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 ALFP_1958 e2f24096ebe4247f949bb4b723e693a9 260 SUPERFAMILY SSF75217 113 258 9.81E-39 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases ALFP_1958 e2f24096ebe4247f949bb4b723e693a9 260 SUPERFAMILY SSF55315 3 103 1.51E-7 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like ALFP_1958 e2f24096ebe4247f949bb4b723e693a9 260 Gene3D G3DSA:3.40.1280.10 109 260 9.6E-45 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal ALFP_0250 8365a1ac56e85bc6237dfe940a8e5ead 275 Pfam PF03099 Biotin/lipoate A/B protein ligase family 48 155 3.1E-10 T 12-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 ALFP_0250 8365a1ac56e85bc6237dfe940a8e5ead 275 SUPERFAMILY SSF50037 225 272 6.41E-6 T 12-10-2018 IPR008988 Transcriptional repressor, C-terminal ALFP_0250 8365a1ac56e85bc6237dfe940a8e5ead 275 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 15 270 1.4E-37 T 12-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 ALFP_0250 8365a1ac56e85bc6237dfe940a8e5ead 275 Gene3D G3DSA:3.30.930.10 1 220 5.6E-42 T 12-10-2018 ALFP_0250 8365a1ac56e85bc6237dfe940a8e5ead 275 SUPERFAMILY SSF55681 8 221 6.13E-37 T 12-10-2018 ALFP_0250 8365a1ac56e85bc6237dfe940a8e5ead 275 Gene3D G3DSA:2.30.30.100 225 273 3.4E-11 T 12-10-2018 ALFP_0250 8365a1ac56e85bc6237dfe940a8e5ead 275 Pfam PF02237 Biotin protein ligase C terminal domain 225 272 7.6E-9 T 12-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 ALFP_3043 9e7d41a4deaf51586f92ccde2776a1d2 228 SUPERFAMILY SSF54427 89 225 7.45E-36 T 12-10-2018 IPR032710 NTF2-like domain superfamily ALFP_3043 9e7d41a4deaf51586f92ccde2776a1d2 228 PIRSF PIRSF003299 4 226 2.2E-49 T 12-10-2018 IPR026264 Type IV secretion system protein VirB8/PtlE GO:0030255 ALFP_3043 9e7d41a4deaf51586f92ccde2776a1d2 228 Pfam PF04335 VirB8 protein 20 223 3.0E-40 T 12-10-2018 IPR007430 Bacterial virulence protein VirB8 GO:0016020 ALFP_3043 9e7d41a4deaf51586f92ccde2776a1d2 228 Gene3D G3DSA:3.10.450.230 88 227 2.1E-42 T 12-10-2018 ALFP_0036 b1a52f0e618bd7e58fd9ecf3ee92fc6e 355 Gene3D G3DSA:3.40.190.170 28 332 1.5E-121 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_0036 b1a52f0e618bd7e58fd9ecf3ee92fc6e 355 PIRSF PIRSF039026 1 352 4.7E-113 T 12-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like ALFP_0036 b1a52f0e618bd7e58fd9ecf3ee92fc6e 355 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 34 315 7.3E-59 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_0036 b1a52f0e618bd7e58fd9ecf3ee92fc6e 355 Gene3D G3DSA:3.40.190.10 147 318 1.5E-121 T 12-10-2018 ALFP_1140 4e3154306d4581bc95cbc0895a77c38f 394 SUPERFAMILY SSF53756 18 388 2.54E-67 T 12-10-2018 ALFP_1140 4e3154306d4581bc95cbc0895a77c38f 394 Pfam PF13439 Glycosyltransferase Family 4 30 188 7.3E-12 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 ALFP_1140 4e3154306d4581bc95cbc0895a77c38f 394 Pfam PF00534 Glycosyl transferases group 1 201 367 1.0E-30 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 ALFP_1140 4e3154306d4581bc95cbc0895a77c38f 394 Gene3D G3DSA:3.40.50.2000 17 195 8.7E-27 T 12-10-2018 ALFP_1140 4e3154306d4581bc95cbc0895a77c38f 394 Gene3D G3DSA:3.40.50.2000 196 369 1.5E-40 T 12-10-2018 ALFP_0687 684c063590da46e520c02a4f57e94e32 341 Gene3D G3DSA:3.40.50.2300 46 303 2.2E-52 T 12-10-2018 ALFP_0687 684c063590da46e520c02a4f57e94e32 341 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 39 330 2.9E-38 T 12-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 ALFP_0687 684c063590da46e520c02a4f57e94e32 341 Gene3D G3DSA:3.40.50.2300 143 328 2.2E-52 T 12-10-2018 ALFP_0687 684c063590da46e520c02a4f57e94e32 341 SUPERFAMILY SSF53822 49 246 2.15E-6 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_0926 5011897b12c28acee2b36cfad78d3960 319 PIRSF PIRSF020623 6 312 3.2E-91 T 12-10-2018 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 ALFP_0926 5011897b12c28acee2b36cfad78d3960 319 TIGRFAM TIGR02277 PaaX_trns_reg: phenylacetic acid degradation operon negative regulatory protein PaaX 26 309 2.6E-85 T 12-10-2018 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 ALFP_0926 5011897b12c28acee2b36cfad78d3960 319 Pfam PF07848 PaaX-like protein 23 88 2.1E-26 T 12-10-2018 IPR012906 PaaX-like, N-terminal ALFP_0926 5011897b12c28acee2b36cfad78d3960 319 Pfam PF08223 PaaX-like protein C-terminal domain 191 286 8.1E-27 T 12-10-2018 IPR013225 PaaX-like, C-terminal ALFP_0926 5011897b12c28acee2b36cfad78d3960 319 Gene3D G3DSA:1.10.10.10 23 105 2.5E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1326 798e6c8658acfdda99a0569bfe453215 459 Pfam PF00860 Permease family 38 419 5.4E-69 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 ALFP_3075 8ea2ab14cf511176c73b2dbf6f182532 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 2.0E-62 T 12-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3075 8ea2ab14cf511176c73b2dbf6f182532 142 PIRSF PIRSF002181 1 142 1.7E-49 T 12-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 ALFP_3075 8ea2ab14cf511176c73b2dbf6f182532 142 SUPERFAMILY SSF52161 1 139 2.35E-59 T 12-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 ALFP_3075 8ea2ab14cf511176c73b2dbf6f182532 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.202 T 12-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 ALFP_3075 8ea2ab14cf511176c73b2dbf6f182532 142 Gene3D G3DSA:3.90.1180.10 1 142 1.4E-61 T 12-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 ALFP_3075 8ea2ab14cf511176c73b2dbf6f182532 142 Pfam PF00572 Ribosomal protein L13 15 138 8.8E-56 T 12-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 ALFP_0386 0123f4b5b34a29f227403161b30734b4 405 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 24 2.5E-8 T 12-10-2018 IPR024973 ESPR domain ALFP_0386 0123f4b5b34a29f227403161b30734b4 405 SUPERFAMILY SSF101967 255 323 1.83E-6 T 12-10-2018 ALFP_0386 0123f4b5b34a29f227403161b30734b4 405 Gene3D G3DSA:2.150.10.10 246 375 1.7E-12 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal ALFP_0386 0123f4b5b34a29f227403161b30734b4 405 Pfam PF05658 Head domain of trimeric autotransporter adhesin 260 284 4.3E-4 T 12-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 ALFP_1697 4a5042551e70945e98fc560767322cad 136 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 1 40 3.4E-16 T 12-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 ALFP_1697 4a5042551e70945e98fc560767322cad 136 SUPERFAMILY SSF55200 46 134 2.75E-35 T 12-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 ALFP_1697 4a5042551e70945e98fc560767322cad 136 SUPERFAMILY SSF54364 1 41 2.88E-15 T 12-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 ALFP_1697 4a5042551e70945e98fc560767322cad 136 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 1 134 6.8E-58 T 12-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 ALFP_1697 4a5042551e70945e98fc560767322cad 136 ProSitePatterns PS00938 Initiation factor 3 signature. 22 35 - T 12-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 ALFP_1697 4a5042551e70945e98fc560767322cad 136 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 47 131 5.4E-40 T 12-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 ALFP_1697 4a5042551e70945e98fc560767322cad 136 Gene3D G3DSA:3.30.110.10 40 135 1.7E-38 T 12-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 ALFP_1697 4a5042551e70945e98fc560767322cad 136 Gene3D G3DSA:3.10.20.80 1 39 2.2E-16 T 12-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 ALFP_3281 d9f20434b6cd58b1ef795fb1b9d7f788 398 Pfam PF13692 Glycosyl transferases group 1 212 353 1.7E-10 T 12-10-2018 ALFP_3281 d9f20434b6cd58b1ef795fb1b9d7f788 398 SUPERFAMILY SSF53756 7 386 3.09E-20 T 12-10-2018 ALFP_3281 d9f20434b6cd58b1ef795fb1b9d7f788 398 Gene3D G3DSA:3.40.50.2000 201 370 1.7E-11 T 12-10-2018 ALFP_3281 d9f20434b6cd58b1ef795fb1b9d7f788 398 Gene3D G3DSA:3.40.50.2000 4 199 2.3E-7 T 12-10-2018 ALFP_3282 3212d89ee376b31f2c692e30cb132694 419 Pfam PF00483 Nucleotidyl transferase 6 236 2.2E-35 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 ALFP_3282 3212d89ee376b31f2c692e30cb132694 419 SUPERFAMILY SSF53448 12 230 2.76E-12 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_3282 3212d89ee376b31f2c692e30cb132694 419 Gene3D G3DSA:2.60.120.10 317 411 3.4E-18 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_3282 3212d89ee376b31f2c692e30cb132694 419 SUPERFAMILY SSF51182 135 418 1.29E-70 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_3282 3212d89ee376b31f2c692e30cb132694 419 Pfam PF01050 Mannose-6-phosphate isomerase 264 414 8.3E-67 T 12-10-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 ALFP_3282 3212d89ee376b31f2c692e30cb132694 419 Gene3D G3DSA:3.90.550.10 1 300 1.2E-78 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_3282 3212d89ee376b31f2c692e30cb132694 419 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 7 418 1.6E-153 T 12-10-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 ALFP_2170 10854ad9650f32880e071a18f2df4275 227 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 208 3.6E-16 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_2170 10854ad9650f32880e071a18f2df4275 227 SUPERFAMILY SSF161098 14 203 1.96E-41 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2170 10854ad9650f32880e071a18f2df4275 227 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 111 1.9E-30 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 ALFP_2170 10854ad9650f32880e071a18f2df4275 227 Gene3D G3DSA:1.10.3720.10 3 215 9.7E-50 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1364 96810b3639dfd05a04a92700a04d65d4 252 Pfam PF01435 Peptidase family M48 71 247 1.3E-28 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 ALFP_1364 96810b3639dfd05a04a92700a04d65d4 252 Gene3D G3DSA:3.30.2010.10 61 148 5.3E-14 T 12-10-2018 ALFP_2194 14aca2f1fda290fd185e5e4ac267b06a 235 Gene3D G3DSA:1.20.1050.10 107 222 1.5E-109 T 12-10-2018 ALFP_2194 14aca2f1fda290fd185e5e4ac267b06a 235 SUPERFAMILY SSF47616 109 233 2.78E-31 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily ALFP_2194 14aca2f1fda290fd185e5e4ac267b06a 235 Pfam PF02798 Glutathione S-transferase, N-terminal domain 22 100 3.8E-10 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 ALFP_2194 14aca2f1fda290fd185e5e4ac267b06a 235 SUPERFAMILY SSF52833 12 103 1.83E-20 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_2194 14aca2f1fda290fd185e5e4ac267b06a 235 Pfam PF14497 Glutathione S-transferase, C-terminal domain 148 226 3.4E-10 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal ALFP_2194 14aca2f1fda290fd185e5e4ac267b06a 235 Gene3D G3DSA:3.40.30.10 8 232 1.5E-109 T 12-10-2018 ALFP_1047 227c47a745ee291a61c9653be15f81de 404 Pfam PF00364 Biotin-requiring enzyme 5 77 6.8E-21 T 12-10-2018 IPR000089 Biotin/lipoyl attachment ALFP_1047 227c47a745ee291a61c9653be15f81de 404 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 5 404 3.6E-171 T 12-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 ALFP_1047 227c47a745ee291a61c9653be15f81de 404 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 174 402 1.9E-81 T 12-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 ALFP_1047 227c47a745ee291a61c9653be15f81de 404 Gene3D G3DSA:4.10.320.10 109 154 7.7E-12 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 ALFP_1047 227c47a745ee291a61c9653be15f81de 404 Gene3D G3DSA:2.40.50.100 1 103 1.4E-24 T 12-10-2018 ALFP_1047 227c47a745ee291a61c9653be15f81de 404 SUPERFAMILY SSF47005 109 151 2.75E-9 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 ALFP_1047 227c47a745ee291a61c9653be15f81de 404 Gene3D G3DSA:3.30.559.10 172 404 3.2E-95 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 ALFP_1047 227c47a745ee291a61c9653be15f81de 404 Pfam PF02817 e3 binding domain 116 149 1.4E-11 T 12-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 ALFP_1047 227c47a745ee291a61c9653be15f81de 404 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 ALFP_1047 227c47a745ee291a61c9653be15f81de 404 SUPERFAMILY SSF51230 2 97 1.96E-27 T 12-10-2018 IPR011053 Single hybrid motif ALFP_1047 227c47a745ee291a61c9653be15f81de 404 SUPERFAMILY SSF52777 174 403 7.56E-89 T 12-10-2018 ALFP_2939 be163ab7d68a0f0752862190a9bfada5 180 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 7 138 3.1E-24 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_3325 92f3841fd4c751bb2559e00b1dee3633 346 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 183 336 4.8E-36 T 12-10-2018 IPR017516 AbrB duplication ALFP_3325 92f3841fd4c751bb2559e00b1dee3633 346 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 10 160 1.6E-32 T 12-10-2018 IPR017516 AbrB duplication ALFP_3325 92f3841fd4c751bb2559e00b1dee3633 346 Pfam PF05145 Transition state regulatory protein AbrB 30 337 4.3E-79 T 12-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 ALFP_3325 92f3841fd4c751bb2559e00b1dee3633 346 PIRSF PIRSF038991 1 346 3.2E-78 T 12-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 ALFP_3275 e400363d2743c2d8fc677b5390cee38a 215 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 18 214 1.3E-54 T 12-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 ALFP_3275 e400363d2743c2d8fc677b5390cee38a 215 SUPERFAMILY SSF51621 3 214 3.77E-76 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 ALFP_3275 e400363d2743c2d8fc677b5390cee38a 215 Gene3D G3DSA:3.20.20.60 2 215 1.2E-82 T 12-10-2018 ALFP_3723 9a67caefe4db8601e2f9e4171b148342 205 SUPERFAMILY SSF52499 18 200 1.7E-44 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_3723 9a67caefe4db8601e2f9e4171b148342 205 Pfam PF00857 Isochorismatase family 23 193 1.5E-35 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 ALFP_3723 9a67caefe4db8601e2f9e4171b148342 205 Gene3D G3DSA:3.40.50.850 1 203 9.6E-56 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_0288 b8adee3e23b9c1bb790aed4e216f03b5 416 Pfam PF05977 Transmembrane secretion effector 15 408 3.2E-35 T 12-10-2018 IPR010290 Transmembrane secretion effector ALFP_0288 b8adee3e23b9c1bb790aed4e216f03b5 416 SUPERFAMILY SSF103473 17 402 7.85E-42 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_0288 b8adee3e23b9c1bb790aed4e216f03b5 416 Gene3D G3DSA:1.20.1250.20 14 397 5.9E-35 T 12-10-2018 ALFP_2224 de3f9fe309e574626a4596a27d8384d1 379 SMART SM00564 139 171 2.5E-4 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat ALFP_2224 de3f9fe309e574626a4596a27d8384d1 379 SMART SM00564 274 306 100.0 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat ALFP_2224 de3f9fe309e574626a4596a27d8384d1 379 SMART SM00564 100 131 16.0 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat ALFP_2224 de3f9fe309e574626a4596a27d8384d1 379 SMART SM00564 184 216 290.0 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat ALFP_2224 de3f9fe309e574626a4596a27d8384d1 379 SMART SM00564 60 92 0.012 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat ALFP_2224 de3f9fe309e574626a4596a27d8384d1 379 SMART SM00564 315 347 80.0 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat ALFP_2224 de3f9fe309e574626a4596a27d8384d1 379 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 6 375 2.7E-114 T 12-10-2018 IPR017687 Outer membrane protein assembly factor BamB ALFP_2224 de3f9fe309e574626a4596a27d8384d1 379 Pfam PF13360 PQQ-like domain 75 305 4.4E-44 T 12-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat ALFP_2224 de3f9fe309e574626a4596a27d8384d1 379 SUPERFAMILY SSF50998 26 368 1.88E-61 T 12-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily ALFP_2224 de3f9fe309e574626a4596a27d8384d1 379 Gene3D G3DSA:2.130.10.10 19 378 3.5E-77 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 ALFP_2224 de3f9fe309e574626a4596a27d8384d1 379 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 1 378 34.591 T 12-10-2018 IPR017687 Outer membrane protein assembly factor BamB ALFP_0714 67b68dfa021415518a4d04cc749c935b 240 Gene3D G3DSA:2.40.360.20 124 240 1.6E-6 T 12-10-2018 ALFP_1442 3230cc005cf5d884e5641c83e8f3d385 410 Pfam PF03404 Mo-co oxidoreductase dimerisation domain 289 400 2.8E-14 T 12-10-2018 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 Reactome: R-HSA-1614517 ALFP_1442 3230cc005cf5d884e5641c83e8f3d385 410 Gene3D G3DSA:3.90.420.10 44 293 1.9E-81 T 12-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 ALFP_1442 3230cc005cf5d884e5641c83e8f3d385 410 Pfam PF00174 Oxidoreductase molybdopterin binding domain 103 266 8.8E-42 T 12-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 ALFP_1442 3230cc005cf5d884e5641c83e8f3d385 410 SUPERFAMILY SSF81296 292 406 7.7E-26 T 12-10-2018 IPR014756 Immunoglobulin E-set ALFP_1442 3230cc005cf5d884e5641c83e8f3d385 410 PRINTS PR00407 Eukaryotic molybdopterin domain signature 215 231 2.0E-18 T 12-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 ALFP_1442 3230cc005cf5d884e5641c83e8f3d385 410 PRINTS PR00407 Eukaryotic molybdopterin domain signature 388 401 2.0E-18 T 12-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 ALFP_1442 3230cc005cf5d884e5641c83e8f3d385 410 PRINTS PR00407 Eukaryotic molybdopterin domain signature 375 387 2.0E-18 T 12-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 ALFP_1442 3230cc005cf5d884e5641c83e8f3d385 410 PRINTS PR00407 Eukaryotic molybdopterin domain signature 81 97 2.0E-18 T 12-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 ALFP_1442 3230cc005cf5d884e5641c83e8f3d385 410 PRINTS PR00407 Eukaryotic molybdopterin domain signature 330 342 2.0E-18 T 12-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 ALFP_1442 3230cc005cf5d884e5641c83e8f3d385 410 PRINTS PR00407 Eukaryotic molybdopterin domain signature 232 245 2.0E-18 T 12-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 ALFP_1442 3230cc005cf5d884e5641c83e8f3d385 410 PRINTS PR00407 Eukaryotic molybdopterin domain signature 136 147 2.0E-18 T 12-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 ALFP_1442 3230cc005cf5d884e5641c83e8f3d385 410 PRINTS PR00407 Eukaryotic molybdopterin domain signature 248 261 2.0E-18 T 12-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 ALFP_1442 3230cc005cf5d884e5641c83e8f3d385 410 SUPERFAMILY SSF56524 61 325 3.14E-50 T 12-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 ALFP_1442 3230cc005cf5d884e5641c83e8f3d385 410 Gene3D G3DSA:2.60.40.650 294 410 3.7E-35 T 12-10-2018 ALFP_1126 e20ec39993a5ba8c2d4d36e9fac87dc6 114 Pfam PF03960 ArsC family 2 109 1.3E-13 T 12-10-2018 IPR006660 Arsenate reductase-like ALFP_1126 e20ec39993a5ba8c2d4d36e9fac87dc6 114 SUPERFAMILY SSF52833 1 110 3.06E-28 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_1126 e20ec39993a5ba8c2d4d36e9fac87dc6 114 Gene3D G3DSA:3.40.30.10 1 112 1.9E-33 T 12-10-2018 ALFP_1126 e20ec39993a5ba8c2d4d36e9fac87dc6 114 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 1 108 8.3E-29 T 12-10-2018 IPR006504 Transcriptional regulator Spx/MgsR ALFP_1290 17166bf5a4a993a8096afaf8c8842647 232 ProSitePatterns PS00221 MIP family signature. 63 71 - T 12-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 ALFP_1290 17166bf5a4a993a8096afaf8c8842647 232 TIGRFAM TIGR00861 MIP: MIP family channel proteins 9 224 3.7E-59 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 ALFP_1290 17166bf5a4a993a8096afaf8c8842647 232 PRINTS PR00783 Major intrinsic protein family signature 45 69 1.6E-51 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 ALFP_1290 17166bf5a4a993a8096afaf8c8842647 232 PRINTS PR00783 Major intrinsic protein family signature 138 156 1.6E-51 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 ALFP_1290 17166bf5a4a993a8096afaf8c8842647 232 PRINTS PR00783 Major intrinsic protein family signature 207 227 1.6E-51 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 ALFP_1290 17166bf5a4a993a8096afaf8c8842647 232 PRINTS PR00783 Major intrinsic protein family signature 5 24 1.6E-51 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 ALFP_1290 17166bf5a4a993a8096afaf8c8842647 232 PRINTS PR00783 Major intrinsic protein family signature 82 101 1.6E-51 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 ALFP_1290 17166bf5a4a993a8096afaf8c8842647 232 PRINTS PR00783 Major intrinsic protein family signature 168 190 1.6E-51 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 ALFP_1290 17166bf5a4a993a8096afaf8c8842647 232 Pfam PF00230 Major intrinsic protein 2 224 9.7E-52 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 ALFP_1290 17166bf5a4a993a8096afaf8c8842647 232 Hamap MF_01146 Aquaporin Z [aqpZ]. 4 231 33.087 T 12-10-2018 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 ALFP_1290 17166bf5a4a993a8096afaf8c8842647 232 SUPERFAMILY SSF81338 4 229 1.57E-65 T 12-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 ALFP_1290 17166bf5a4a993a8096afaf8c8842647 232 Gene3D G3DSA:1.20.1080.10 1 231 5.2E-84 T 12-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 Gene3D G3DSA:1.10.40.30 359 431 2.2E-186 T 12-10-2018 ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 Pfam PF14698 Argininosuccinate lyase C-terminal 362 430 6.8E-25 T 12-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 Gene3D G3DSA:1.10.275.10 24 228 2.2E-186 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 Pfam PF00206 Lyase 6 299 2.7E-77 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 PRINTS PR00145 Argininosuccinate lyase family signature 141 161 1.1E-67 T 12-10-2018 ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 PRINTS PR00145 Argininosuccinate lyase family signature 230 254 1.1E-67 T 12-10-2018 ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 PRINTS PR00145 Argininosuccinate lyase family signature 192 208 1.1E-67 T 12-10-2018 ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 PRINTS PR00145 Argininosuccinate lyase family signature 274 290 1.1E-67 T 12-10-2018 ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 PRINTS PR00145 Argininosuccinate lyase family signature 309 328 1.1E-67 T 12-10-2018 ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 PRINTS PR00145 Argininosuccinate lyase family signature 100 122 1.1E-67 T 12-10-2018 ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 ProSitePatterns PS00163 Fumarate lyases signature. 274 283 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 Hamap MF_00006 Argininosuccinate lyase [argH]. 1 452 42.591 T 12-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 SUPERFAMILY SSF48557 3 448 2.51E-148 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 Gene3D G3DSA:1.20.200.10 118 444 2.2E-186 T 12-10-2018 ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 PRINTS PR00149 Fumarate lyase superfamily signature 146 164 2.1E-30 T 12-10-2018 IPR000362 Fumarate lyase family ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 PRINTS PR00149 Fumarate lyase superfamily signature 230 257 2.1E-30 T 12-10-2018 IPR000362 Fumarate lyase family ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 PRINTS PR00149 Fumarate lyase superfamily signature 274 290 2.1E-30 T 12-10-2018 IPR000362 Fumarate lyase family ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 PRINTS PR00149 Fumarate lyase superfamily signature 101 119 2.1E-30 T 12-10-2018 IPR000362 Fumarate lyase family ALFP_2030 79f8975a8cbf310681494e9934de8e77 456 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 445 1.5E-185 T 12-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 ALFP_2195 6857561fed5c72dd177dc93d8f35605b 288 Gene3D G3DSA:2.60.120.10 144 243 9.1E-67 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_2195 6857561fed5c72dd177dc93d8f35605b 288 SUPERFAMILY SSF51182 5 284 5.2E-72 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_2195 6857561fed5c72dd177dc93d8f35605b 288 PIRSF PIRSF006232 1 281 9.3E-78 T 12-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 ALFP_2195 6857561fed5c72dd177dc93d8f35605b 288 Pfam PF02678 Pirin 17 122 6.5E-31 T 12-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 ALFP_2195 6857561fed5c72dd177dc93d8f35605b 288 Gene3D G3DSA:2.60.120.10 16 267 9.1E-67 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_2195 6857561fed5c72dd177dc93d8f35605b 288 Pfam PF05726 Pirin C-terminal cupin domain 175 271 2.2E-25 T 12-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 ALFP_2923 1ed3062c7cfcba9ebbc48c56b65ad29e 796 Gene3D G3DSA:1.10.439.10 16 163 2.2E-40 T 12-10-2018 IPR023343 Penicillin amidase type, domain 1 GO:0016811 ALFP_2923 1ed3062c7cfcba9ebbc48c56b65ad29e 796 Gene3D G3DSA:1.10.1400.10 538 696 7.8E-179 T 12-10-2018 ALFP_2923 1ed3062c7cfcba9ebbc48c56b65ad29e 796 Gene3D G3DSA:3.60.20.10 257 775 7.8E-179 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal ALFP_2923 1ed3062c7cfcba9ebbc48c56b65ad29e 796 Pfam PF01804 Penicillin amidase 20 785 1.5E-130 T 12-10-2018 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0017000 ALFP_2923 1ed3062c7cfcba9ebbc48c56b65ad29e 796 PIRSF PIRSF001227 6 795 6.4E-108 T 12-10-2018 IPR014395 Penicillin/GL-7-ACA/AHL acylase GO:0016811 ALFP_2923 1ed3062c7cfcba9ebbc48c56b65ad29e 796 SUPERFAMILY SSF56235 19 795 1.36E-171 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal ALFP_2923 1ed3062c7cfcba9ebbc48c56b65ad29e 796 Gene3D G3DSA:1.10.287.150 164 210 5.3E-15 T 12-10-2018 ALFP_2923 1ed3062c7cfcba9ebbc48c56b65ad29e 796 Gene3D G3DSA:2.30.120.10 323 395 7.8E-179 T 12-10-2018 ALFP_0427 b751adeb2ea9021fad818fbe7ca99344 605 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 4 599 3.7E-254 T 12-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 ALFP_0427 b751adeb2ea9021fad818fbe7ca99344 605 Gene3D G3DSA:3.50.30.80 410 561 1.0E-55 T 12-10-2018 ALFP_0427 b751adeb2ea9021fad818fbe7ca99344 605 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 108 118 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 ALFP_0427 b751adeb2ea9021fad818fbe7ca99344 605 SUPERFAMILY SSF52016 410 601 1.73E-60 T 12-10-2018 ALFP_0427 b751adeb2ea9021fad818fbe7ca99344 605 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 498 509 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 ALFP_0427 b751adeb2ea9021fad818fbe7ca99344 605 Pfam PF00920 Dehydratase family 20 596 2.2E-218 T 12-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 ALFP_0427 b751adeb2ea9021fad818fbe7ca99344 605 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 1 599 43.559 T 12-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 ALFP_0427 b751adeb2ea9021fad818fbe7ca99344 605 SUPERFAMILY SSF143975 2 409 9.81E-132 T 12-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 ALFP_0284 4e630d0e2eb0b88ee6539e2f5d517515 262 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 11 188 0.0031 T 12-10-2018 ALFP_0284 4e630d0e2eb0b88ee6539e2f5d517515 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_0284 4e630d0e2eb0b88ee6539e2f5d517515 262 SUPERFAMILY SSF51735 8 259 1.91E-69 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0284 4e630d0e2eb0b88ee6539e2f5d517515 262 TIGRFAM TIGR04316 dhbA_paeA: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase 14 260 4.1E-103 T 12-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 ALFP_0284 4e630d0e2eb0b88ee6539e2f5d517515 262 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 211 230 2.0E-53 T 12-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 ALFP_0284 4e630d0e2eb0b88ee6539e2f5d517515 262 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 17 34 2.0E-53 T 12-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 ALFP_0284 4e630d0e2eb0b88ee6539e2f5d517515 262 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 107 127 2.0E-53 T 12-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 ALFP_0284 4e630d0e2eb0b88ee6539e2f5d517515 262 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 237 256 2.0E-53 T 12-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 ALFP_0284 4e630d0e2eb0b88ee6539e2f5d517515 262 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 172 195 2.0E-53 T 12-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 ALFP_0284 4e630d0e2eb0b88ee6539e2f5d517515 262 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 87 104 2.0E-53 T 12-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 ALFP_0284 4e630d0e2eb0b88ee6539e2f5d517515 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 258 1.9E-56 T 12-10-2018 ALFP_0284 4e630d0e2eb0b88ee6539e2f5d517515 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 3.2E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0284 4e630d0e2eb0b88ee6539e2f5d517515 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 3.2E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0284 4e630d0e2eb0b88ee6539e2f5d517515 262 Gene3D G3DSA:3.40.50.720 1 261 6.6E-74 T 12-10-2018 ALFP_0219 aec0c0a67af501766a03bf141726d386 429 SMART SM00839 196 426 5.3E-100 T 12-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 ALFP_0219 aec0c0a67af501766a03bf141726d386 429 PIRSF PIRSF000185 21 429 7.6E-162 T 12-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 ALFP_0219 aec0c0a67af501766a03bf141726d386 429 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 48 176 1.4E-55 T 12-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 ALFP_0219 aec0c0a67af501766a03bf141726d386 429 Gene3D G3DSA:1.10.8.1210 2 55 6.5E-23 T 12-10-2018 ALFP_0219 aec0c0a67af501766a03bf141726d386 429 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 227 247 1.5E-32 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 ALFP_0219 aec0c0a67af501766a03bf141726d386 429 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 185 207 1.5E-32 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 ALFP_0219 aec0c0a67af501766a03bf141726d386 429 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 354 365 1.5E-32 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 ALFP_0219 aec0c0a67af501766a03bf141726d386 429 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 105 119 1.5E-32 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 ALFP_0219 aec0c0a67af501766a03bf141726d386 429 Gene3D G3DSA:3.40.50.720 194 429 6.4E-88 T 12-10-2018 ALFP_0219 aec0c0a67af501766a03bf141726d386 429 SUPERFAMILY SSF53223 17 196 3.84E-67 T 12-10-2018 ALFP_0219 aec0c0a67af501766a03bf141726d386 429 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 113 126 - T 12-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 ALFP_0219 aec0c0a67af501766a03bf141726d386 429 Gene3D G3DSA:3.40.50.10860 56 193 1.9E-57 T 12-10-2018 ALFP_0219 aec0c0a67af501766a03bf141726d386 429 SUPERFAMILY SSF51735 194 428 4.21E-79 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0219 aec0c0a67af501766a03bf141726d386 429 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 194 426 5.9E-76 T 12-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 ALFP_2225 015d56b1a8f5d59f15c1605f2f096156 211 Gene3D G3DSA:1.25.40.10 99 209 3.2E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2225 015d56b1a8f5d59f15c1605f2f096156 211 PIRSF PIRSF006170 1 211 5.9E-52 T 12-10-2018 IPR026039 Uncharacterised protein family UPF0070 ALFP_2225 015d56b1a8f5d59f15c1605f2f096156 211 SUPERFAMILY SSF48452 97 196 1.73E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2225 015d56b1a8f5d59f15c1605f2f096156 211 Pfam PF09976 Tetratricopeptide repeat-like domain 15 209 3.1E-55 T 12-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 ALFP_1317 5a7d9cae3677126d914dcd4c5e3c8749 377 SUPERFAMILY SSF53383 10 373 1.18E-74 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_1317 5a7d9cae3677126d914dcd4c5e3c8749 377 PIRSF PIRSF000524 13 377 7.1E-41 T 12-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 ALFP_1317 5a7d9cae3677126d914dcd4c5e3c8749 377 Gene3D G3DSA:3.90.1150.10 271 370 3.8E-123 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_1317 5a7d9cae3677126d914dcd4c5e3c8749 377 Gene3D G3DSA:3.40.640.10 38 270 3.8E-123 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_1317 5a7d9cae3677126d914dcd4c5e3c8749 377 Pfam PF00266 Aminotransferase class-V 21 312 5.3E-16 T 12-10-2018 IPR000192 Aminotransferase class V domain ALFP_2219 1f53dd28fdc4bcf0c868b3be1fe67a0b 438 TIGRFAM TIGR01933 hflK: HflK protein 100 375 1.2E-90 T 12-10-2018 IPR010201 HflK GO:0016021 ALFP_2219 1f53dd28fdc4bcf0c868b3be1fe67a0b 438 Gene3D G3DSA:3.30.479.30 155 264 6.5E-19 T 12-10-2018 ALFP_2219 1f53dd28fdc4bcf0c868b3be1fe67a0b 438 SMART SM00244 98 273 1.8E-30 T 12-10-2018 IPR001107 Band 7 domain ALFP_2219 1f53dd28fdc4bcf0c868b3be1fe67a0b 438 Pfam PF01145 SPFH domain / Band 7 family 102 288 2.7E-29 T 12-10-2018 IPR001107 Band 7 domain ALFP_2219 1f53dd28fdc4bcf0c868b3be1fe67a0b 438 SUPERFAMILY SSF117892 162 280 1.83E-21 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily ALFP_2219 1f53dd28fdc4bcf0c868b3be1fe67a0b 438 Pfam PF12221 Bacterial membrane protein N terminal 8 57 4.8E-13 T 12-10-2018 IPR020980 Menbrane protein HflK, N-terminal ALFP_2908 5a0d034531d1bd18f058e51a6382f192 246 Pfam PF07238 PilZ domain 121 231 2.9E-8 T 12-10-2018 IPR009875 PilZ domain GO:0035438 ALFP_2908 5a0d034531d1bd18f058e51a6382f192 246 Gene3D G3DSA:2.40.10.220 123 243 1.4E-21 T 12-10-2018 ALFP_2908 5a0d034531d1bd18f058e51a6382f192 246 Hamap MF_01457 Flagellar brake protein YcgR [ycgR]. 8 242 26.886 T 12-10-2018 IPR023787 Type III secretion system flagellar brake protein YcgR GO:0035438|GO:0071945 ALFP_2908 5a0d034531d1bd18f058e51a6382f192 246 Gene3D G3DSA:2.30.110.10 9 121 1.0E-9 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 ALFP_2908 5a0d034531d1bd18f058e51a6382f192 246 Pfam PF07317 Flagellar regulator YcgR 13 118 7.0E-27 T 12-10-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal ALFP_1533 de3253391080294e38d52e5c8975587e 215 SUPERFAMILY SSF48498 91 168 3.71E-6 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily ALFP_1533 de3253391080294e38d52e5c8975587e 215 Gene3D G3DSA:1.10.357.10 62 209 5.6E-14 T 12-10-2018 ALFP_1533 de3253391080294e38d52e5c8975587e 215 SUPERFAMILY SSF46689 11 86 9.48E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1533 de3253391080294e38d52e5c8975587e 215 Gene3D G3DSA:1.10.10.60 10 61 1.4E-16 T 12-10-2018 ALFP_1533 de3253391080294e38d52e5c8975587e 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 3.7E-15 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1533 de3253391080294e38d52e5c8975587e 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 1.3E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1533 de3253391080294e38d52e5c8975587e 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 1.3E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_2757 a62c942922aa902d3b0ec606280f0229 278 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 187 197 - T 12-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 ALFP_2757 a62c942922aa902d3b0ec606280f0229 278 Gene3D G3DSA:3.40.50.1860 14 259 6.4E-76 T 12-10-2018 ALFP_2757 a62c942922aa902d3b0ec606280f0229 278 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 78 86 - T 12-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 ALFP_2757 a62c942922aa902d3b0ec606280f0229 278 Pfam PF01177 Asp/Glu/Hydantoin racemase 14 221 3.4E-28 T 12-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 ALFP_2757 a62c942922aa902d3b0ec606280f0229 278 TIGRFAM TIGR00067 glut_race: glutamate racemase 14 258 8.8E-59 T 12-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 ALFP_2757 a62c942922aa902d3b0ec606280f0229 278 Hamap MF_00258 Glutamate racemase [murI]. 12 263 32.722 T 12-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 ALFP_2757 a62c942922aa902d3b0ec606280f0229 278 SUPERFAMILY SSF53681 117 262 5.23E-28 T 12-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 ALFP_2757 a62c942922aa902d3b0ec606280f0229 278 SUPERFAMILY SSF53681 13 114 1.11E-33 T 12-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 ALFP_2757 a62c942922aa902d3b0ec606280f0229 278 Gene3D G3DSA:3.40.50.1860 103 214 6.4E-76 T 12-10-2018 ALFP_1080 c1c5d7cbc5bded2f1dfc2bda240a5ec7 396 SUPERFAMILY SSF51905 120 262 1.83E-19 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1080 c1c5d7cbc5bded2f1dfc2bda240a5ec7 396 Gene3D G3DSA:3.50.50.60 5 329 2.5E-83 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1080 c1c5d7cbc5bded2f1dfc2bda240a5ec7 396 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 132 2.1E-12 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ALFP_1080 c1c5d7cbc5bded2f1dfc2bda240a5ec7 396 SUPERFAMILY SSF51905 4 150 5.04E-21 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1080 c1c5d7cbc5bded2f1dfc2bda240a5ec7 396 Gene3D G3DSA:3.50.50.60 116 271 2.5E-83 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2284 7bd7c58279a5a36f43ba84cd4363754c 351 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 13 350 51.385 T 12-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 ALFP_2284 7bd7c58279a5a36f43ba84cd4363754c 351 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 15 300 2.7E-73 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 ALFP_2284 7bd7c58279a5a36f43ba84cd4363754c 351 Gene3D G3DSA:3.20.20.300 4 350 9.5E-119 T 12-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 ALFP_2284 7bd7c58279a5a36f43ba84cd4363754c 351 SUPERFAMILY SSF51445 13 311 2.74E-82 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily ALFP_1642 675358f7940ab492070e59617341cabf 292 SUPERFAMILY SSF56281 39 260 2.66E-16 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_1642 675358f7940ab492070e59617341cabf 292 Pfam PF12706 Beta-lactamase superfamily domain 50 255 1.3E-12 T 12-10-2018 IPR001279 Metallo-beta-lactamase ALFP_1642 675358f7940ab492070e59617341cabf 292 Gene3D G3DSA:3.60.15.10 29 292 4.3E-72 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_0557 faf7b75f12469f29a170b679af494f77 299 Gene3D G3DSA:3.40.190.290 91 293 7.8E-68 T 12-10-2018 ALFP_0557 faf7b75f12469f29a170b679af494f77 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.4E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0557 faf7b75f12469f29a170b679af494f77 299 Gene3D G3DSA:1.10.10.10 3 89 7.9E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0557 faf7b75f12469f29a170b679af494f77 299 Pfam PF03466 LysR substrate binding domain 89 291 1.3E-42 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0557 faf7b75f12469f29a170b679af494f77 299 SUPERFAMILY SSF53850 89 295 3.08E-44 T 12-10-2018 ALFP_0557 faf7b75f12469f29a170b679af494f77 299 SUPERFAMILY SSF46785 4 85 8.97E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1543 8d3acd7967a7d1ffa7514769fb95e90b 139 Pfam PF01475 Ferric uptake regulator family 1 113 4.8E-38 T 12-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 ALFP_1543 8d3acd7967a7d1ffa7514769fb95e90b 139 Gene3D G3DSA:1.10.10.10 1 70 3.4E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1543 8d3acd7967a7d1ffa7514769fb95e90b 139 Gene3D G3DSA:3.30.1490.190 72 127 1.2E-21 T 12-10-2018 ALFP_1543 8d3acd7967a7d1ffa7514769fb95e90b 139 SUPERFAMILY SSF46785 1 119 9.9E-34 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0863 6f1fd7b859a50b029fe8531cd484f66b 141 Pfam PF05232 Chlorhexidine efflux transporter 5 67 5.4E-19 T 12-10-2018 IPR007896 Chlorhexidine efflux transporter ALFP_0863 6f1fd7b859a50b029fe8531cd484f66b 141 Pfam PF05232 Chlorhexidine efflux transporter 73 135 6.5E-20 T 12-10-2018 IPR007896 Chlorhexidine efflux transporter ALFP_3535 f6f826e462f04c4c45cbb024b77a9434 595 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 564 3.3E-108 T 12-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_3535 f6f826e462f04c4c45cbb024b77a9434 595 Gene3D G3DSA:3.30.1360.30 272 426 1.4E-193 T 12-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 ALFP_3535 f6f826e462f04c4c45cbb024b77a9434 595 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 221 2.8E-26 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_3535 f6f826e462f04c4c45cbb024b77a9434 595 PRINTS PR01042 Aspartyl-tRNA synthetase signature 524 538 2.8E-26 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_3535 f6f826e462f04c4c45cbb024b77a9434 595 PRINTS PR01042 Aspartyl-tRNA synthetase signature 480 496 2.8E-26 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_3535 f6f826e462f04c4c45cbb024b77a9434 595 PRINTS PR01042 Aspartyl-tRNA synthetase signature 191 203 2.8E-26 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_3535 f6f826e462f04c4c45cbb024b77a9434 595 SUPERFAMILY SSF55261 291 416 5.45E-40 T 12-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 ALFP_3535 f6f826e462f04c4c45cbb024b77a9434 595 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 590 33.336 T 12-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 ALFP_3535 f6f826e462f04c4c45cbb024b77a9434 595 Gene3D G3DSA:3.30.930.10 118 588 1.4E-193 T 12-10-2018 ALFP_3535 f6f826e462f04c4c45cbb024b77a9434 595 SUPERFAMILY SSF50249 1 105 4.19E-34 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_3535 f6f826e462f04c4c45cbb024b77a9434 595 Pfam PF01336 OB-fold nucleic acid binding domain 18 102 1.3E-19 T 12-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 ALFP_3535 f6f826e462f04c4c45cbb024b77a9434 595 SUPERFAMILY SSF55681 110 590 1.73E-103 T 12-10-2018 ALFP_3535 f6f826e462f04c4c45cbb024b77a9434 595 Pfam PF02938 GAD domain 308 406 1.3E-25 T 12-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 ALFP_3535 f6f826e462f04c4c45cbb024b77a9434 595 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 588 5.6E-241 T 12-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 ALFP_3535 f6f826e462f04c4c45cbb024b77a9434 595 Gene3D G3DSA:2.40.50.140 1 105 2.3E-33 T 12-10-2018 ALFP_0486 4d8cc3c539c8295a6e6717aa192aa6e9 258 Gene3D G3DSA:3.40.50.300 1 252 5.0E-68 T 12-10-2018 ALFP_0486 4d8cc3c539c8295a6e6717aa192aa6e9 258 Pfam PF00005 ABC transporter 17 164 6.4E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0486 4d8cc3c539c8295a6e6717aa192aa6e9 258 SMART SM00382 26 213 5.1E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0486 4d8cc3c539c8295a6e6717aa192aa6e9 258 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0486 4d8cc3c539c8295a6e6717aa192aa6e9 258 SUPERFAMILY SSF52540 2 227 1.07E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3414 88680c33965157c99fd7a9fab16ecee5 783 SUPERFAMILY SSF69349 441 615 3.77E-40 T 12-10-2018 ALFP_3414 88680c33965157c99fd7a9fab16ecee5 783 Pfam PF05954 Phage late control gene D protein (GPD) 26 326 3.1E-95 T 12-10-2018 ALFP_3414 88680c33965157c99fd7a9fab16ecee5 783 Gene3D G3DSA:2.30.110.50 11 327 2.4E-112 T 12-10-2018 ALFP_3414 88680c33965157c99fd7a9fab16ecee5 783 SUPERFAMILY SSF69255 364 451 4.97E-32 T 12-10-2018 ALFP_3414 88680c33965157c99fd7a9fab16ecee5 783 Gene3D G3DSA:3.30.1920.30 224 286 2.4E-112 T 12-10-2018 ALFP_3414 88680c33965157c99fd7a9fab16ecee5 783 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 21 504 7.1E-143 T 12-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein ALFP_3414 88680c33965157c99fd7a9fab16ecee5 783 SUPERFAMILY SSF69279 188 362 1.87E-42 T 12-10-2018 ALFP_3414 88680c33965157c99fd7a9fab16ecee5 783 SUPERFAMILY SSF69279 9 184 5.53E-55 T 12-10-2018 ALFP_3414 88680c33965157c99fd7a9fab16ecee5 783 Gene3D G3DSA:3.55.50.10 98 188 2.4E-112 T 12-10-2018 ALFP_3414 88680c33965157c99fd7a9fab16ecee5 783 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 8 522 2.6E-185 T 12-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset ALFP_3414 88680c33965157c99fd7a9fab16ecee5 783 Gene3D G3DSA:2.40.50.230 354 456 7.7E-42 T 12-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily ALFP_0644 a9973b1e10f8102f21e57598c7bfc6e3 157 Gene3D G3DSA:1.10.8.640 19 99 1.9E-29 T 12-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily ALFP_0644 a9973b1e10f8102f21e57598c7bfc6e3 157 Pfam PF03918 Cytochrome C biogenesis protein 21 148 4.6E-46 T 12-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family ALFP_0523 b906de67675f2108ee91af25d752f31f 324 Gene3D G3DSA:3.40.190.10 126 249 5.5E-93 T 12-10-2018 ALFP_0523 b906de67675f2108ee91af25d752f31f 324 Gene3D G3DSA:3.40.190.150 30 313 5.5E-93 T 12-10-2018 ALFP_0523 b906de67675f2108ee91af25d752f31f 324 PIRSF PIRSF017082 1 323 2.6E-71 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0523 b906de67675f2108ee91af25d752f31f 324 SUPERFAMILY SSF53850 111 287 2.17E-14 T 12-10-2018 ALFP_0523 b906de67675f2108ee91af25d752f31f 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 320 2.7E-65 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_3322 a1c6ec8461e4849d551f53242f1a78f0 308 SUPERFAMILY SSF46785 5 112 1.58E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3322 a1c6ec8461e4849d551f53242f1a78f0 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 2.9E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3322 a1c6ec8461e4849d551f53242f1a78f0 308 SUPERFAMILY SSF53850 93 294 1.63E-34 T 12-10-2018 ALFP_3322 a1c6ec8461e4849d551f53242f1a78f0 308 Gene3D G3DSA:3.40.190.290 95 290 5.3E-31 T 12-10-2018 ALFP_3322 a1c6ec8461e4849d551f53242f1a78f0 308 Gene3D G3DSA:1.10.10.10 7 92 5.2E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3322 a1c6ec8461e4849d551f53242f1a78f0 308 Pfam PF03466 LysR substrate binding domain 93 289 2.2E-29 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1285 3d541e63a67f1c34c1ab8268cb1452fb 314 Pfam PF09335 SNARE associated Golgi protein 30 156 7.6E-12 T 12-10-2018 IPR032816 SNARE associated Golgi protein ALFP_1285 3d541e63a67f1c34c1ab8268cb1452fb 314 Gene3D G3DSA:3.40.250.10 198 308 2.3E-18 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_1285 3d541e63a67f1c34c1ab8268cb1452fb 314 Pfam PF00581 Rhodanese-like domain 208 298 2.2E-10 T 12-10-2018 IPR001763 Rhodanese-like domain ALFP_1285 3d541e63a67f1c34c1ab8268cb1452fb 314 SMART SM00450 208 302 1.9E-10 T 12-10-2018 IPR001763 Rhodanese-like domain ALFP_1285 3d541e63a67f1c34c1ab8268cb1452fb 314 SUPERFAMILY SSF52821 185 306 2.62E-22 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_2062 aba2b1061e5cd58fcb888bb6213d2abe 271 SUPERFAMILY SSF55120 1 252 5.32E-91 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_2062 aba2b1061e5cd58fcb888bb6213d2abe 271 Pfam PF01416 tRNA pseudouridine synthase 143 245 1.3E-30 T 12-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_2062 aba2b1061e5cd58fcb888bb6213d2abe 271 Pfam PF01416 tRNA pseudouridine synthase 10 103 1.4E-9 T 12-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_2062 aba2b1061e5cd58fcb888bb6213d2abe 271 PIRSF PIRSF001430 1 255 1.2E-77 T 12-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_2062 aba2b1061e5cd58fcb888bb6213d2abe 271 Gene3D G3DSA:3.30.70.660 106 243 1.2E-47 T 12-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 ALFP_2062 aba2b1061e5cd58fcb888bb6213d2abe 271 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 244 34.556 T 12-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_2062 aba2b1061e5cd58fcb888bb6213d2abe 271 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 2 239 7.5E-67 T 12-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 ALFP_2062 aba2b1061e5cd58fcb888bb6213d2abe 271 Gene3D G3DSA:3.30.70.580 1 105 1.4E-37 T 12-10-2018 ALFP_0232 a3d7e34c28a1332e65f286ace088be97 306 Gene3D G3DSA:3.20.20.70 1 300 4.5E-132 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0232 a3d7e34c28a1332e65f286ace088be97 306 Pfam PF00682 HMGL-like 6 279 3.3E-53 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 ALFP_0232 a3d7e34c28a1332e65f286ace088be97 306 ProSitePatterns PS01062 Hydroxymethylglutaryl-coenzyme A lyase active site. 233 242 - T 12-10-2018 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site GO:0004419 KEGG: 00072+4.1.3.4|KEGG: 00280+4.1.3.4|KEGG: 00281+4.1.3.4|KEGG: 00650+4.1.3.4|MetaCyc: PWY-5074|Reactome: R-HSA-77111|Reactome: R-HSA-9033241 ALFP_0232 a3d7e34c28a1332e65f286ace088be97 306 SUPERFAMILY SSF51569 1 290 1.59E-72 T 12-10-2018 ALFP_1755 eb5ce4c64dbbc9438b37f29cb3715d74 162 PIRSF PIRSF002070 1 142 5.4E-31 T 12-10-2018 ALFP_1755 eb5ce4c64dbbc9438b37f29cb3715d74 162 SUPERFAMILY SSF50249 1 151 5.71E-39 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_1755 eb5ce4c64dbbc9438b37f29cb3715d74 162 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 1 151 5.7E-27 T 12-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 ALFP_1755 eb5ce4c64dbbc9438b37f29cb3715d74 162 Pfam PF00436 Single-strand binding protein family 1 97 4.6E-21 T 12-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 ALFP_1755 eb5ce4c64dbbc9438b37f29cb3715d74 162 Gene3D G3DSA:2.40.50.140 1 135 3.1E-31 T 12-10-2018 ALFP_1755 eb5ce4c64dbbc9438b37f29cb3715d74 162 Hamap MF_00984 Single-stranded DNA-binding protein. 1 103 23.433 T 12-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 ALFP_3245 f1b8b30bb2ec1582279240f2ad67bfa4 167 SUPERFAMILY SSF52833 29 165 7.27E-34 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_3245 f1b8b30bb2ec1582279240f2ad67bfa4 167 Gene3D G3DSA:3.40.30.10 27 167 3.7E-35 T 12-10-2018 ALFP_3245 f1b8b30bb2ec1582279240f2ad67bfa4 167 Pfam PF08534 Redoxin 29 153 8.7E-25 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 ALFP_0092 3c86e3e683091d0b163c1d52bc3e4226 325 Gene3D G3DSA:1.10.10.60 215 322 4.4E-35 T 12-10-2018 ALFP_0092 3c86e3e683091d0b163c1d52bc3e4226 325 SUPERFAMILY SSF46689 215 266 1.66E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0092 3c86e3e683091d0b163c1d52bc3e4226 325 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 268 313 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ALFP_0092 3c86e3e683091d0b163c1d52bc3e4226 325 SMART SM00342 231 317 1.3E-29 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0092 3c86e3e683091d0b163c1d52bc3e4226 325 Pfam PF14525 AraC-binding-like domain 20 196 1.7E-39 T 12-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like ALFP_0092 3c86e3e683091d0b163c1d52bc3e4226 325 SUPERFAMILY SSF46689 268 320 1.88E-5 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0092 3c86e3e683091d0b163c1d52bc3e4226 325 Pfam PF12833 Helix-turn-helix domain 238 319 4.0E-28 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0500 d543aad12a42023260326ca17471e733 418 SUPERFAMILY SSF53383 5 402 3.19E-79 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_0500 d543aad12a42023260326ca17471e733 418 Gene3D G3DSA:3.40.640.10 43 305 3.0E-152 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_0500 d543aad12a42023260326ca17471e733 418 Pfam PF00266 Aminotransferase class-V 156 354 4.7E-14 T 12-10-2018 IPR000192 Aminotransferase class V domain ALFP_0500 d543aad12a42023260326ca17471e733 418 TIGRFAM TIGR01814 kynureninase: kynureninase 10 400 2.5E-96 T 12-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 ALFP_0500 d543aad12a42023260326ca17471e733 418 PIRSF PIRSF038800 1 409 1.5E-138 T 12-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 ALFP_0500 d543aad12a42023260326ca17471e733 418 Gene3D G3DSA:3.90.1150.10 13 400 3.0E-152 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_0500 d543aad12a42023260326ca17471e733 418 Hamap MF_01970 Kynureninase [kynU]. 1 401 32.059 T 12-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 ALFP_3177 38fa090bd7f99e088915acafaf522175 374 Pfam PF13437 HlyD family secretion protein 145 247 8.2E-7 T 12-10-2018 ALFP_3177 38fa090bd7f99e088915acafaf522175 374 Gene3D G3DSA:1.10.287.470 68 141 7.4E-66 T 12-10-2018 ALFP_3177 38fa090bd7f99e088915acafaf522175 374 Gene3D G3DSA:2.40.420.20 248 338 2.7E-20 T 12-10-2018 ALFP_3177 38fa090bd7f99e088915acafaf522175 374 Gene3D G3DSA:2.40.50.100 33 177 7.4E-66 T 12-10-2018 ALFP_3177 38fa090bd7f99e088915acafaf522175 374 SUPERFAMILY SSF111369 22 263 1.09E-54 T 12-10-2018 ALFP_3177 38fa090bd7f99e088915acafaf522175 374 Pfam PF13533 Biotin-lipoyl like 35 82 7.2E-15 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain ALFP_3177 38fa090bd7f99e088915acafaf522175 374 Gene3D G3DSA:2.40.30.170 28 247 7.4E-66 T 12-10-2018 ALFP_3177 38fa090bd7f99e088915acafaf522175 374 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 9 337 2.0E-77 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 ALFP_3004 388983c93bf4d17f957e460e7cc089d8 332 Gene3D G3DSA:3.40.190.150 38 322 2.8E-88 T 12-10-2018 ALFP_3004 388983c93bf4d17f957e460e7cc089d8 332 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 58 324 1.1E-59 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_3004 388983c93bf4d17f957e460e7cc089d8 332 SUPERFAMILY SSF53850 120 294 1.05E-7 T 12-10-2018 ALFP_3004 388983c93bf4d17f957e460e7cc089d8 332 Gene3D G3DSA:3.40.190.10 135 257 2.8E-88 T 12-10-2018 ALFP_3004 388983c93bf4d17f957e460e7cc089d8 332 PIRSF PIRSF017082 3 332 2.9E-70 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0121 8c34e7f16b77d9632991fbb3adf04827 500 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 27 500 3.0E-206 T 12-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 ALFP_0121 8c34e7f16b77d9632991fbb3adf04827 500 SUPERFAMILY SSF53167 24 500 4.34E-144 T 12-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 ALFP_0121 8c34e7f16b77d9632991fbb3adf04827 500 Pfam PF01048 Phosphorylase superfamily 287 445 4.7E-11 T 12-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 ALFP_0121 8c34e7f16b77d9632991fbb3adf04827 500 Hamap MF_01932 AMP nucleosidase [amn]. 18 500 60.316 T 12-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 ALFP_0121 8c34e7f16b77d9632991fbb3adf04827 500 Gene3D G3DSA:3.30.1730.10 21 186 6.9E-48 T 12-10-2018 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 ALFP_0121 8c34e7f16b77d9632991fbb3adf04827 500 Gene3D G3DSA:3.40.50.1580 189 500 3.1E-96 T 12-10-2018 ALFP_0121 8c34e7f16b77d9632991fbb3adf04827 500 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 27 183 1.3E-53 T 12-10-2018 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 ALFP_2142 cae6d27ea059d70cf046d80f45f12b6a 285 Pfam PF01618 MotA/TolQ/ExbB proton channel family 128 239 3.7E-34 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel ALFP_0790 e63a5aa038bb6e94c4d56d0891a3873c 390 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 69 81 2.7E-6 T 12-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_0790 e63a5aa038bb6e94c4d56d0891a3873c 390 ProSitePatterns PS01348 MraY family signature 2. 213 224 - T 12-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_0790 e63a5aa038bb6e94c4d56d0891a3873c 390 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 26 388 23.435 T 12-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_0790 e63a5aa038bb6e94c4d56d0891a3873c 390 ProSitePatterns PS01347 MraY family signature 1. 69 81 - T 12-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_0790 e63a5aa038bb6e94c4d56d0891a3873c 390 Pfam PF00953 Glycosyl transferase family 4 100 308 2.0E-35 T 12-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 ALFP_0790 e63a5aa038bb6e94c4d56d0891a3873c 390 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 39 390 1.5E-122 T 12-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_3014 723f1bb1573f5a14f66f596f316029f7 370 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 12-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 ALFP_3014 723f1bb1573f5a14f66f596f316029f7 370 Gene3D G3DSA:1.20.1090.10 188 367 8.3E-40 T 12-10-2018 ALFP_3014 723f1bb1573f5a14f66f596f316029f7 370 Pfam PF00465 Iron-containing alcohol dehydrogenase 7 352 6.1E-79 T 12-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 ALFP_3014 723f1bb1573f5a14f66f596f316029f7 370 TIGRFAM TIGR03405 Phn_Fe-ADH: phosphonate metabolism-associated iron-containing alcohol dehydrogenase 4 362 7.9E-136 T 12-10-2018 IPR017775 Alcohol dehydrogenase, iron-type, phosphonate metabolism-associated ALFP_3014 723f1bb1573f5a14f66f596f316029f7 370 Gene3D G3DSA:3.40.50.1970 1 185 1.5E-38 T 12-10-2018 ALFP_3014 723f1bb1573f5a14f66f596f316029f7 370 SUPERFAMILY SSF56796 2 354 6.93E-80 T 12-10-2018 ALFP_1673 2f57674c4d3332d57c536adaf05d132f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 3.0E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1673 2f57674c4d3332d57c536adaf05d132f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 3.0E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1673 2f57674c4d3332d57c536adaf05d132f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 3.0E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1673 2f57674c4d3332d57c536adaf05d132f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 3.0E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1673 2f57674c4d3332d57c536adaf05d132f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 3.0E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1673 2f57674c4d3332d57c536adaf05d132f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 3.0E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1673 2f57674c4d3332d57c536adaf05d132f 256 SUPERFAMILY SSF51735 9 253 3.85E-63 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1673 2f57674c4d3332d57c536adaf05d132f 256 Gene3D G3DSA:3.40.50.720 1 255 6.5E-63 T 12-10-2018 ALFP_1673 2f57674c4d3332d57c536adaf05d132f 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 2.6E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1673 2f57674c4d3332d57c536adaf05d132f 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 2.6E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1673 2f57674c4d3332d57c536adaf05d132f 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.6E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1673 2f57674c4d3332d57c536adaf05d132f 256 Pfam PF00106 short chain dehydrogenase 10 186 1.4E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1673 2f57674c4d3332d57c536adaf05d132f 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_2007 383697451433b3a5b24c24849ca806ef 153 PIRSF PIRSF006276 1 150 1.5E-18 T 12-10-2018 IPR006015 Universal stress protein A ALFP_2007 383697451433b3a5b24c24849ca806ef 153 Pfam PF00582 Universal stress protein family 1 147 5.8E-32 T 12-10-2018 IPR006016 UspA ALFP_2007 383697451433b3a5b24c24849ca806ef 153 Gene3D G3DSA:3.40.50.620 1 150 6.2E-38 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_2007 383697451433b3a5b24c24849ca806ef 153 SUPERFAMILY SSF52402 1 148 4.02E-36 T 12-10-2018 ALFP_2007 383697451433b3a5b24c24849ca806ef 153 PRINTS PR01438 Universal stress protein signature 2 20 1.5E-18 T 12-10-2018 IPR006015 Universal stress protein A ALFP_2007 383697451433b3a5b24c24849ca806ef 153 PRINTS PR01438 Universal stress protein signature 125 147 1.5E-18 T 12-10-2018 IPR006015 Universal stress protein A ALFP_2007 383697451433b3a5b24c24849ca806ef 153 PRINTS PR01438 Universal stress protein signature 107 119 1.5E-18 T 12-10-2018 IPR006015 Universal stress protein A ALFP_0041 ea1dfc3509c14f0794c07dabe22064f0 505 Pfam PF13193 AMP-binding enzyme C-terminal domain 419 494 2.3E-19 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain ALFP_0041 ea1dfc3509c14f0794c07dabe22064f0 505 Gene3D G3DSA:3.40.50.12780 1 403 9.7E-108 T 12-10-2018 ALFP_0041 ea1dfc3509c14f0794c07dabe22064f0 505 SUPERFAMILY SSF56801 4 504 9.03E-147 T 12-10-2018 ALFP_0041 ea1dfc3509c14f0794c07dabe22064f0 505 ProSitePatterns PS00455 Putative AMP-binding domain signature. 160 171 - T 12-10-2018 IPR020845 AMP-binding, conserved site ALFP_0041 ea1dfc3509c14f0794c07dabe22064f0 505 Pfam PF00501 AMP-binding enzyme 11 410 1.2E-93 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_0041 ea1dfc3509c14f0794c07dabe22064f0 505 Gene3D G3DSA:3.30.300.310 406 505 1.6E-32 T 12-10-2018 ALFP_0050 78c35195fa40aa68737a7daaa516e5d8 308 Pfam PF00892 EamA-like transporter family 160 295 5.0E-18 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_0050 78c35195fa40aa68737a7daaa516e5d8 308 Pfam PF00892 EamA-like transporter family 15 144 3.3E-14 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_0050 78c35195fa40aa68737a7daaa516e5d8 308 SUPERFAMILY SSF103481 51 147 4.97E-12 T 12-10-2018 ALFP_0050 78c35195fa40aa68737a7daaa516e5d8 308 SUPERFAMILY SSF103481 196 298 1.77E-11 T 12-10-2018 ALFP_2942 eb55532538a3f67ad061bcaeed0f3d0f 339 Gene3D G3DSA:3.40.190.10 113 214 3.2E-56 T 12-10-2018 ALFP_2942 eb55532538a3f67ad061bcaeed0f3d0f 339 Pfam PF09084 NMT1/THI5 like 41 248 1.1E-35 T 12-10-2018 IPR015168 SsuA/THI5-like ALFP_2942 eb55532538a3f67ad061bcaeed0f3d0f 339 Gene3D G3DSA:3.40.190.10 33 306 3.2E-56 T 12-10-2018 ALFP_2942 eb55532538a3f67ad061bcaeed0f3d0f 339 SUPERFAMILY SSF53850 37 252 3.8E-30 T 12-10-2018 ALFP_2570 bb6e8842b77795c85ae42f79335e93e0 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 6.0E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2570 bb6e8842b77795c85ae42f79335e93e0 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 402 6.0E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2570 bb6e8842b77795c85ae42f79335e93e0 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 421 6.0E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2570 bb6e8842b77795c85ae42f79335e93e0 441 Gene3D G3DSA:3.30.565.10 265 427 1.8E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_2570 bb6e8842b77795c85ae42f79335e93e0 441 SUPERFAMILY SSF55874 273 421 1.57E-29 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_2570 bb6e8842b77795c85ae42f79335e93e0 441 Gene3D G3DSA:3.30.450.300 6 132 9.1E-43 T 12-10-2018 IPR038421 Sensor histidine kinase RisS, periplasmic domain superfamily ALFP_2570 bb6e8842b77795c85ae42f79335e93e0 441 Pfam PF00672 HAMP domain 155 203 3.9E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 ALFP_2570 bb6e8842b77795c85ae42f79335e93e0 441 SUPERFAMILY SSF158472 155 204 2.35E-6 T 12-10-2018 ALFP_2570 bb6e8842b77795c85ae42f79335e93e0 441 Gene3D G3DSA:1.10.287.130 152 262 1.5E-19 T 12-10-2018 ALFP_2570 bb6e8842b77795c85ae42f79335e93e0 441 Pfam PF16524 Periplasmic domain of Sensor histidine kinase RisS 21 126 1.9E-38 T 12-10-2018 IPR032408 Sensor histidine kinase RisS, periplasmic domain ALFP_2570 bb6e8842b77795c85ae42f79335e93e0 441 SMART SM00387 309 424 4.1E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2570 bb6e8842b77795c85ae42f79335e93e0 441 Pfam PF00512 His Kinase A (phospho-acceptor) domain 211 263 6.7E-7 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_2570 bb6e8842b77795c85ae42f79335e93e0 441 SUPERFAMILY SSF47384 192 263 1.75E-10 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_2570 bb6e8842b77795c85ae42f79335e93e0 441 SMART SM00388 208 267 4.0E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_2570 bb6e8842b77795c85ae42f79335e93e0 441 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 313 421 4.9E-17 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2570 bb6e8842b77795c85ae42f79335e93e0 441 SMART SM00304 155 207 1.5E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 ALFP_1341 43df65fd7c69240d2f5d2e56b274c569 464 SUPERFAMILY SSF50022 7 158 4.06E-46 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_1341 43df65fd7c69240d2f5d2e56b274c569 464 Pfam PF00355 Rieske [2Fe-2S] domain 41 126 2.9E-19 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ALFP_1341 43df65fd7c69240d2f5d2e56b274c569 464 Gene3D G3DSA:3.90.380.10 24 427 2.2E-99 T 12-10-2018 ALFP_1341 43df65fd7c69240d2f5d2e56b274c569 464 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 199 431 1.7E-10 T 12-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 ALFP_1341 43df65fd7c69240d2f5d2e56b274c569 464 Gene3D G3DSA:2.102.10.10 38 169 2.2E-99 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_1341 43df65fd7c69240d2f5d2e56b274c569 464 SUPERFAMILY SSF55961 161 438 5.89E-49 T 12-10-2018 ALFP_1341 43df65fd7c69240d2f5d2e56b274c569 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 186 208 1.5E-36 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_1341 43df65fd7c69240d2f5d2e56b274c569 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 144 170 1.5E-36 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_1341 43df65fd7c69240d2f5d2e56b274c569 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 55 70 1.5E-36 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_1341 43df65fd7c69240d2f5d2e56b274c569 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 76 96 1.5E-36 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_1341 43df65fd7c69240d2f5d2e56b274c569 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 25 50 1.5E-36 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_1341 43df65fd7c69240d2f5d2e56b274c569 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 98 118 1.5E-36 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_1678 c612ad7d45d323c4c884b2197880a729 309 SUPERFAMILY SSF53822 55 306 1.01E-33 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_1678 c612ad7d45d323c4c884b2197880a729 309 Pfam PF13377 Periplasmic binding protein-like domain 146 305 3.3E-24 T 12-10-2018 ALFP_1678 c612ad7d45d323c4c884b2197880a729 309 Gene3D G3DSA:3.40.50.2300 55 289 7.8E-37 T 12-10-2018 ALFP_1678 c612ad7d45d323c4c884b2197880a729 309 Gene3D G3DSA:3.40.50.2300 137 265 7.8E-37 T 12-10-2018 ALFP_0178 c272a6ea2cbbf2cf2f9cdfef8f186446 165 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.1E-24 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0178 c272a6ea2cbbf2cf2f9cdfef8f186446 165 Gene3D G3DSA:3.40.190.10 80 165 1.8E-10 T 12-10-2018 ALFP_0178 c272a6ea2cbbf2cf2f9cdfef8f186446 165 SUPERFAMILY SSF53850 88 150 3.8E-8 T 12-10-2018 ALFP_0178 c272a6ea2cbbf2cf2f9cdfef8f186446 165 Pfam PF03466 LysR substrate binding domain 87 146 9.5E-9 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0178 c272a6ea2cbbf2cf2f9cdfef8f186446 165 SUPERFAMILY SSF46785 1 110 1.88E-26 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0178 c272a6ea2cbbf2cf2f9cdfef8f186446 165 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.6E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0178 c272a6ea2cbbf2cf2f9cdfef8f186446 165 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.6E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0178 c272a6ea2cbbf2cf2f9cdfef8f186446 165 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.6E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0178 c272a6ea2cbbf2cf2f9cdfef8f186446 165 Gene3D G3DSA:1.10.10.10 1 79 6.6E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2246 15b696d662f7c99d5fcea66f9b2a8078 437 SUPERFAMILY SSF53850 37 429 5.93E-44 T 12-10-2018 ALFP_2246 15b696d662f7c99d5fcea66f9b2a8078 437 Gene3D G3DSA:3.40.190.10 151 426 4.6E-68 T 12-10-2018 ALFP_2246 15b696d662f7c99d5fcea66f9b2a8078 437 Pfam PF13416 Bacterial extracellular solute-binding protein 55 370 4.8E-27 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein ALFP_2246 15b696d662f7c99d5fcea66f9b2a8078 437 Gene3D G3DSA:3.40.190.10 40 386 4.6E-68 T 12-10-2018 ALFP_3299 ae7161b7551e68913a11870c103f0615 293 Gene3D G3DSA:1.20.120.220 93 293 1.0E-49 T 12-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3299 ae7161b7551e68913a11870c103f0615 293 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 36 288 1.4E-40 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3299 ae7161b7551e68913a11870c103f0615 293 Pfam PF00119 ATP synthase A chain 42 286 1.5E-54 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3299 ae7161b7551e68913a11870c103f0615 293 ProSitePatterns PS00449 ATP synthase a subunit signature. 216 225 - T 12-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3299 ae7161b7551e68913a11870c103f0615 293 Hamap MF_01393 ATP synthase subunit a [atpB]. 14 293 14.098 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3299 ae7161b7551e68913a11870c103f0615 293 SUPERFAMILY SSF81336 95 287 7.85E-37 T 12-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_0877 14e2e6279fd222da28f0dcd4e4d73f7b 820 Gene3D G3DSA:3.40.50.300 13 177 5.1E-100 T 12-10-2018 ALFP_0877 14e2e6279fd222da28f0dcd4e4d73f7b 820 Pfam PF13177 DNA polymerase III, delta subunit 20 178 1.5E-38 T 12-10-2018 ALFP_0877 14e2e6279fd222da28f0dcd4e4d73f7b 820 Gene3D G3DSA:1.20.272.10 242 361 1.6E-33 T 12-10-2018 ALFP_0877 14e2e6279fd222da28f0dcd4e4d73f7b 820 SUPERFAMILY SSF48019 243 363 3.23E-25 T 12-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 ALFP_0877 14e2e6279fd222da28f0dcd4e4d73f7b 820 SMART SM00382 37 179 2.8E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0877 14e2e6279fd222da28f0dcd4e4d73f7b 820 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 355 1.2E-124 T 12-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 ALFP_0877 14e2e6279fd222da28f0dcd4e4d73f7b 820 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 362 6.2E-20 T 12-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 ALFP_0877 14e2e6279fd222da28f0dcd4e4d73f7b 820 SUPERFAMILY SSF52540 34 225 1.17E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0877 14e2e6279fd222da28f0dcd4e4d73f7b 820 Gene3D G3DSA:1.10.8.60 8 240 5.1E-100 T 12-10-2018 ALFP_0877 14e2e6279fd222da28f0dcd4e4d73f7b 820 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 694 811 2.4E-6 T 12-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_3412 ea9d2ca4da3b451035614beda4b88bc3 840 SUPERFAMILY SSF141571 659 816 5.76E-24 T 12-10-2018 ALFP_3412 ea9d2ca4da3b451035614beda4b88bc3 840 SUPERFAMILY SSF141571 523 693 1.37E-20 T 12-10-2018 ALFP_3412 ea9d2ca4da3b451035614beda4b88bc3 840 Pfam PF13599 Pentapeptide repeats (9 copies) 524 590 2.4E-8 T 12-10-2018 IPR001646 Pentapeptide repeat ALFP_3412 ea9d2ca4da3b451035614beda4b88bc3 840 Gene3D G3DSA:2.160.20.80 698 837 1.8E-21 T 12-10-2018 ALFP_3412 ea9d2ca4da3b451035614beda4b88bc3 840 Pfam PF09937 Uncharacterized protein conserved in bacteria (DUF2169) 20 293 2.9E-69 T 12-10-2018 IPR018683 Domain of unknown function DUF2169 ALFP_3412 ea9d2ca4da3b451035614beda4b88bc3 840 Gene3D G3DSA:2.160.20.80 505 697 1.7E-21 T 12-10-2018 ALFP_3412 ea9d2ca4da3b451035614beda4b88bc3 840 Pfam PF00805 Pentapeptide repeats (8 copies) 745 783 6.8E-8 T 12-10-2018 IPR001646 Pentapeptide repeat ALFP_3412 ea9d2ca4da3b451035614beda4b88bc3 840 Pfam PF00805 Pentapeptide repeats (8 copies) 717 744 0.0017 T 12-10-2018 IPR001646 Pentapeptide repeat ALFP_3407 a860bc42de2a96db3938a8d6cad2212a 185 PIRSF PIRSF028301 5 182 5.0E-56 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 ALFP_3407 a860bc42de2a96db3938a8d6cad2212a 185 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 11 164 3.7E-52 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 ALFP_3407 a860bc42de2a96db3938a8d6cad2212a 185 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 16 164 1.1E-54 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 ALFP_3478 2ad388a7ec209590c0ac4f7bfc5272f5 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3478 2ad388a7ec209590c0ac4f7bfc5272f5 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3478 2ad388a7ec209590c0ac4f7bfc5272f5 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3478 2ad388a7ec209590c0ac4f7bfc5272f5 321 Gene3D G3DSA:3.40.190.10 166 270 2.1E-19 T 12-10-2018 ALFP_3478 2ad388a7ec209590c0ac4f7bfc5272f5 321 Pfam PF03466 LysR substrate binding domain 92 294 6.7E-23 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_3478 2ad388a7ec209590c0ac4f7bfc5272f5 321 SUPERFAMILY SSF53850 92 298 2.02E-23 T 12-10-2018 ALFP_3478 2ad388a7ec209590c0ac4f7bfc5272f5 321 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.4E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3478 2ad388a7ec209590c0ac4f7bfc5272f5 321 SUPERFAMILY SSF46785 1 82 3.78E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3478 2ad388a7ec209590c0ac4f7bfc5272f5 321 Gene3D G3DSA:3.40.190.10 92 283 2.1E-19 T 12-10-2018 ALFP_3478 2ad388a7ec209590c0ac4f7bfc5272f5 321 Gene3D G3DSA:1.10.10.10 1 91 1.8E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2740 af5f7f15ed5613c157ee25ce098a1203 357 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 350 2.6E-82 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 ALFP_2740 af5f7f15ed5613c157ee25ce098a1203 357 Gene3D G3DSA:1.10.287.470 99 157 2.8E-73 T 12-10-2018 ALFP_2740 af5f7f15ed5613c157ee25ce098a1203 357 Gene3D G3DSA:2.40.420.20 44 348 2.8E-73 T 12-10-2018 ALFP_2740 af5f7f15ed5613c157ee25ce098a1203 357 Gene3D G3DSA:2.40.50.100 65 197 2.8E-73 T 12-10-2018 ALFP_2740 af5f7f15ed5613c157ee25ce098a1203 357 Gene3D G3DSA:2.40.30.170 50 271 2.8E-73 T 12-10-2018 ALFP_2740 af5f7f15ed5613c157ee25ce098a1203 357 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 66 265 2.6E-30 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain ALFP_2740 af5f7f15ed5613c157ee25ce098a1203 357 SUPERFAMILY SSF111369 57 270 6.15E-42 T 12-10-2018 ALFP_2816 c9c507e2cfb3083f989b5d9830e17d3f 352 PIRSF PIRSF001237 4 352 2.1E-137 T 12-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_2816 c9c507e2cfb3083f989b5d9830e17d3f 352 Hamap MF_00219 Dihydroorotase [pyrC]. 6 351 45.96 T 12-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_2816 c9c507e2cfb3083f989b5d9830e17d3f 352 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 8 350 8.2E-138 T 12-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_2816 c9c507e2cfb3083f989b5d9830e17d3f 352 ProSitePatterns PS00483 Dihydroorotase signature 2. 253 264 - T 12-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_2816 c9c507e2cfb3083f989b5d9830e17d3f 352 Gene3D G3DSA:3.20.20.140 6 351 1.0E-104 T 12-10-2018 ALFP_2816 c9c507e2cfb3083f989b5d9830e17d3f 352 ProSitePatterns PS00482 Dihydroorotase signature 1. 15 23 - T 12-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 ALFP_2816 c9c507e2cfb3083f989b5d9830e17d3f 352 Pfam PF01979 Amidohydrolase family 15 316 2.5E-19 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 ALFP_2816 c9c507e2cfb3083f989b5d9830e17d3f 352 SUPERFAMILY SSF51556 6 350 9.08E-138 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_2569 e85d3a5b1ba54d81286cd3d0ada8c9d4 244 Gene3D G3DSA:1.10.10.10 131 242 2.8E-34 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2569 e85d3a5b1ba54d81286cd3d0ada8c9d4 244 SUPERFAMILY SSF52172 7 131 3.56E-44 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_2569 e85d3a5b1ba54d81286cd3d0ada8c9d4 244 SMART SM00862 162 238 3.1E-21 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_2569 e85d3a5b1ba54d81286cd3d0ada8c9d4 244 SUPERFAMILY SSF46894 138 240 1.5E-27 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ALFP_2569 e85d3a5b1ba54d81286cd3d0ada8c9d4 244 Pfam PF00486 Transcriptional regulatory protein, C terminal 163 238 1.8E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_2569 e85d3a5b1ba54d81286cd3d0ada8c9d4 244 SMART SM00448 10 121 1.3E-46 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2569 e85d3a5b1ba54d81286cd3d0ada8c9d4 244 Pfam PF00072 Response regulator receiver domain 12 122 7.5E-33 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2569 e85d3a5b1ba54d81286cd3d0ada8c9d4 244 Gene3D G3DSA:3.40.50.2300 2 130 9.3E-41 T 12-10-2018 ALFP_2129 29975f20fde78b963a0d2dbf9daef1f6 161 Pfam PF01899 Na+/H+ ion antiporter subunit 12 159 1.7E-34 T 12-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 ALFP_2129 29975f20fde78b963a0d2dbf9daef1f6 161 PIRSF PIRSF019239 1 161 3.9E-34 T 12-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 ALFP_0778 4586f20918160498d9a5cfe3576a3d11 590 Gene3D G3DSA:1.10.3080.10 12 435 2.0E-87 T 12-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 ALFP_0778 4586f20918160498d9a5cfe3576a3d11 590 PRINTS PR00762 Chloride channel signature 388 407 1.4E-23 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 ALFP_0778 4586f20918160498d9a5cfe3576a3d11 590 PRINTS PR00762 Chloride channel signature 121 140 1.4E-23 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 ALFP_0778 4586f20918160498d9a5cfe3576a3d11 590 PRINTS PR00762 Chloride channel signature 172 191 1.4E-23 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 ALFP_0778 4586f20918160498d9a5cfe3576a3d11 590 PRINTS PR00762 Chloride channel signature 370 386 1.4E-23 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 ALFP_0778 4586f20918160498d9a5cfe3576a3d11 590 PRINTS PR00762 Chloride channel signature 335 355 1.4E-23 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 ALFP_0778 4586f20918160498d9a5cfe3576a3d11 590 Pfam PF00654 Voltage gated chloride channel 80 420 5.7E-77 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 ALFP_0778 4586f20918160498d9a5cfe3576a3d11 590 Pfam PF00571 CBS domain 514 570 2.5E-5 T 12-10-2018 IPR000644 CBS domain ALFP_0778 4586f20918160498d9a5cfe3576a3d11 590 Pfam PF00571 CBS domain 458 504 0.0044 T 12-10-2018 IPR000644 CBS domain ALFP_0778 4586f20918160498d9a5cfe3576a3d11 590 SMART SM00116 456 504 0.12 T 12-10-2018 IPR000644 CBS domain ALFP_0778 4586f20918160498d9a5cfe3576a3d11 590 SMART SM00116 522 572 5.8 T 12-10-2018 IPR000644 CBS domain ALFP_0778 4586f20918160498d9a5cfe3576a3d11 590 SUPERFAMILY SSF54631 445 569 5.41E-17 T 12-10-2018 ALFP_0778 4586f20918160498d9a5cfe3576a3d11 590 SUPERFAMILY SSF81340 14 438 1.96E-94 T 12-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 ALFP_0778 4586f20918160498d9a5cfe3576a3d11 590 Gene3D G3DSA:3.10.580.10 436 580 5.2E-15 T 12-10-2018 ALFP_1192 8230640afb3901572807572ab7bddc0b 383 Pfam PF01312 FlhB HrpN YscU SpaS Family 8 347 1.2E-124 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 ALFP_1192 8230640afb3901572807572ab7bddc0b 383 Gene3D G3DSA:3.40.1690.10 217 359 4.0E-57 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal ALFP_1192 8230640afb3901572807572ab7bddc0b 383 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 8 353 1.8E-126 T 12-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 ALFP_1192 8230640afb3901572807572ab7bddc0b 383 SUPERFAMILY SSF160544 244 351 2.35E-39 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal ALFP_1192 8230640afb3901572807572ab7bddc0b 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 5.7E-36 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 ALFP_1192 8230640afb3901572807572ab7bddc0b 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 5.7E-36 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 ALFP_1192 8230640afb3901572807572ab7bddc0b 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 5.7E-36 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 ALFP_1192 8230640afb3901572807572ab7bddc0b 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 5.7E-36 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 ALFP_1192 8230640afb3901572807572ab7bddc0b 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 5.7E-36 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 ALFP_0562 0df394dce022ea9aeb62820b1e1239d9 261 Gene3D G3DSA:3.40.225.10 15 252 5.2E-51 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily ALFP_0562 0df394dce022ea9aeb62820b1e1239d9 261 SUPERFAMILY SSF53639 27 236 3.34E-54 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily ALFP_0562 0df394dce022ea9aeb62820b1e1239d9 261 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 33 210 1.7E-36 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal ALFP_0562 0df394dce022ea9aeb62820b1e1239d9 261 SMART SM01007 32 210 4.1E-42 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal ALFP_0829 3b2ead6955d05be0fb4ae8f920109a76 261 SUPERFAMILY SSF55681 1 246 4.92E-112 T 12-10-2018 ALFP_0829 3b2ead6955d05be0fb4ae8f920109a76 261 Gene3D G3DSA:1.20.58.180 171 252 4.8E-35 T 12-10-2018 ALFP_0829 3b2ead6955d05be0fb4ae8f920109a76 261 Gene3D G3DSA:3.30.930.10 1 170 5.6E-90 T 12-10-2018 ALFP_0829 3b2ead6955d05be0fb4ae8f920109a76 261 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 1 246 3.3E-128 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ALFP_0829 3b2ead6955d05be0fb4ae8f920109a76 261 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 68 92 6.3E-68 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ALFP_0829 3b2ead6955d05be0fb4ae8f920109a76 261 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 94 114 6.3E-68 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ALFP_0829 3b2ead6955d05be0fb4ae8f920109a76 261 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 117 132 6.3E-68 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ALFP_0829 3b2ead6955d05be0fb4ae8f920109a76 261 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 207 223 6.3E-68 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ALFP_0829 3b2ead6955d05be0fb4ae8f920109a76 261 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 16 31 6.3E-68 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ALFP_0829 3b2ead6955d05be0fb4ae8f920109a76 261 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 37 57 6.3E-68 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ALFP_0829 3b2ead6955d05be0fb4ae8f920109a76 261 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 1 247 48.737 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ALFP_0829 3b2ead6955d05be0fb4ae8f920109a76 261 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 1 253 6.7E-137 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ALFP_2957 cab8468b0e11a44d1f1618d602dc1076 255 Pfam PF00005 ABC transporter 22 169 1.4E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2957 cab8468b0e11a44d1f1618d602dc1076 255 SUPERFAMILY SSF52540 6 236 1.74E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2957 cab8468b0e11a44d1f1618d602dc1076 255 SMART SM00382 30 218 1.2E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2957 cab8468b0e11a44d1f1618d602dc1076 255 Gene3D G3DSA:3.40.50.300 6 251 2.4E-66 T 12-10-2018 ALFP_1663 abfa0c44a0f94e39018af05de4723a16 90 ProDom PD468738 PHENOL HYDROXYLASE COMPONENT SUBUNIT PHENOLHYDROXYLASE MONOOXYGENASE TOMA0 P0 HYDROCARBONS IRON 9 50 5.0E-10 T 12-10-2018 IPR010353 Phenol hydroxylase subunit KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 ALFP_1663 abfa0c44a0f94e39018af05de4723a16 90 PIRSF PIRSF000039 1 90 2.8E-28 T 12-10-2018 IPR010353 Phenol hydroxylase subunit KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 ALFP_1663 abfa0c44a0f94e39018af05de4723a16 90 Pfam PF06099 Phenol hydroxylase subunit 8 58 9.0E-21 T 12-10-2018 IPR010353 Phenol hydroxylase subunit KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 ALFP_1171 038dc86bcf638695933820c89944fb2f 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 6.6E-9 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1171 038dc86bcf638695933820c89944fb2f 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 6.6E-9 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1171 038dc86bcf638695933820c89944fb2f 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 6.6E-9 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1171 038dc86bcf638695933820c89944fb2f 143 SUPERFAMILY SSF46955 1 126 5.49E-35 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily ALFP_1171 038dc86bcf638695933820c89944fb2f 143 Gene3D G3DSA:1.10.1660.10 1 125 1.4E-32 T 12-10-2018 ALFP_1171 038dc86bcf638695933820c89944fb2f 143 Pfam PF13411 MerR HTH family regulatory protein 1 68 9.2E-21 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1171 038dc86bcf638695933820c89944fb2f 143 SMART SM00422 1 70 4.4E-22 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1171 038dc86bcf638695933820c89944fb2f 143 TIGRFAM TIGR02047 CadR-PbrR: Cd(II)/Pb(II)-responsive transcriptional regulator 1 127 2.5E-54 T 12-10-2018 IPR011791 Cd(II)/Pb(II)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0045893|GO:0046872 ALFP_2135 ca49cd3f7cf8452cbb6620d166571885 107 Pfam PF11953 Domain of unknown function (DUF3470) 66 107 3.5E-10 T 12-10-2018 IPR022569 Ferredoxin, C-terminal ALFP_2135 ca49cd3f7cf8452cbb6620d166571885 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site ALFP_2135 ca49cd3f7cf8452cbb6620d166571885 107 SUPERFAMILY SSF54862 4 101 1.02E-21 T 12-10-2018 ALFP_2135 ca49cd3f7cf8452cbb6620d166571885 107 Pfam PF13187 4Fe-4S dicluster domain 9 55 4.6E-7 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ALFP_2135 ca49cd3f7cf8452cbb6620d166571885 107 Gene3D G3DSA:3.30.70.20 2 101 1.7E-23 T 12-10-2018 ALFP_2135 ca49cd3f7cf8452cbb6620d166571885 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 1.7E-9 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 ALFP_2135 ca49cd3f7cf8452cbb6620d166571885 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 1.7E-9 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 ALFP_2135 ca49cd3f7cf8452cbb6620d166571885 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 1.7E-9 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 ALFP_1667 c56080a67999d5ad056d49f86384db68 120 Pfam PF04663 Phenol hydroxylase conserved region 15 79 2.1E-23 T 12-10-2018 IPR006756 Phenol hydroxylase KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 ALFP_1667 c56080a67999d5ad056d49f86384db68 120 Gene3D G3DSA:3.10.20.560 17 120 1.0E-37 T 12-10-2018 ALFP_0307 49e89eff19f06014c7c3917146e666f0 261 Pfam PF00005 ABC transporter 25 165 3.7E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0307 49e89eff19f06014c7c3917146e666f0 261 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0307 49e89eff19f06014c7c3917146e666f0 261 Gene3D G3DSA:3.40.50.300 1 254 6.6E-62 T 12-10-2018 ALFP_0307 49e89eff19f06014c7c3917146e666f0 261 SMART SM00382 27 215 1.1E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0307 49e89eff19f06014c7c3917146e666f0 261 SUPERFAMILY SSF52540 2 228 5.02E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0354 5486be39ed071ff2a92682196fc2e4c5 316 SMART SM00342 225 309 1.2E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0354 5486be39ed071ff2a92682196fc2e4c5 316 Pfam PF12833 Helix-turn-helix domain 231 310 4.5E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0354 5486be39ed071ff2a92682196fc2e4c5 316 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 278 293 4.1E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_0354 5486be39ed071ff2a92682196fc2e4c5 316 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 293 309 4.1E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ALFP_0354 5486be39ed071ff2a92682196fc2e4c5 316 Pfam PF14525 AraC-binding-like domain 16 179 1.7E-23 T 12-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like ALFP_0354 5486be39ed071ff2a92682196fc2e4c5 316 SUPERFAMILY SSF46689 261 312 4.03E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0354 5486be39ed071ff2a92682196fc2e4c5 316 Gene3D G3DSA:1.10.10.60 205 313 1.3E-27 T 12-10-2018 ALFP_0354 5486be39ed071ff2a92682196fc2e4c5 316 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 261 305 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ALFP_0977 57ee14c30dd7d880ea046a5f59e110aa 459 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 1 458 2.0E-145 T 12-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 ALFP_0977 57ee14c30dd7d880ea046a5f59e110aa 459 SUPERFAMILY SSF47323 309 457 9.42E-33 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_0977 57ee14c30dd7d880ea046a5f59e110aa 459 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 1 458 33.278 T 12-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 ALFP_0977 57ee14c30dd7d880ea046a5f59e110aa 459 SUPERFAMILY SSF52374 1 305 9.38E-75 T 12-10-2018 ALFP_0977 57ee14c30dd7d880ea046a5f59e110aa 459 Pfam PF09190 DALR domain 335 387 3.2E-17 T 12-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 ALFP_0977 57ee14c30dd7d880ea046a5f59e110aa 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 1 10 1.6E-27 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 ALFP_0977 57ee14c30dd7d880ea046a5f59e110aa 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 170 188 1.6E-27 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 ALFP_0977 57ee14c30dd7d880ea046a5f59e110aa 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 201 222 1.6E-27 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 ALFP_0977 57ee14c30dd7d880ea046a5f59e110aa 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 37 46 1.6E-27 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 ALFP_0977 57ee14c30dd7d880ea046a5f59e110aa 459 SMART SM00840 335 390 1.8E-21 T 12-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 ALFP_0977 57ee14c30dd7d880ea046a5f59e110aa 459 Gene3D G3DSA:1.20.120.640 299 459 3.8E-37 T 12-10-2018 ALFP_0977 57ee14c30dd7d880ea046a5f59e110aa 459 Gene3D G3DSA:3.40.50.620 1 298 9.6E-111 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_0977 57ee14c30dd7d880ea046a5f59e110aa 459 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 1 306 1.5E-109 T 12-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 ALFP_2277 581aa3abe900029c589d5262465ae184 295 Pfam PF00122 E1-E2 ATPase 142 204 1.9E-5 T 12-10-2018 ALFP_1307 3726b778c9f41b33ec7be4c9944349bb 269 PIRSF PIRSF000005 36 263 2.3E-63 T 12-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 ALFP_1307 3726b778c9f41b33ec7be4c9944349bb 269 Gene3D G3DSA:1.10.760.10 168 261 1.3E-21 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1307 3726b778c9f41b33ec7be4c9944349bb 269 SUPERFAMILY SSF46626 172 261 6.6E-19 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1307 3726b778c9f41b33ec7be4c9944349bb 269 Gene3D G3DSA:1.10.760.10 82 160 2.3E-19 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1307 3726b778c9f41b33ec7be4c9944349bb 269 Pfam PF00034 Cytochrome c 175 232 2.1E-4 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_1307 3726b778c9f41b33ec7be4c9944349bb 269 Pfam PF00034 Cytochrome c 95 151 5.5E-5 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_1307 3726b778c9f41b33ec7be4c9944349bb 269 SUPERFAMILY SSF46626 95 162 7.13E-17 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2265 e946ad447e11d3d9cc020ad94b9968b7 918 Gene3D G3DSA:1.20.120.330 268 427 1.4E-48 T 12-10-2018 ALFP_2265 e946ad447e11d3d9cc020ad94b9968b7 918 Pfam PF08335 GlnD PII-uridylyltransferase 282 424 6.8E-37 T 12-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 ALFP_2265 e946ad447e11d3d9cc020ad94b9968b7 918 Pfam PF08335 GlnD PII-uridylyltransferase 800 900 1.7E-9 T 12-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 ALFP_2265 e946ad447e11d3d9cc020ad94b9968b7 918 SUPERFAMILY SSF81593 788 916 2.35E-31 T 12-10-2018 ALFP_2265 e946ad447e11d3d9cc020ad94b9968b7 918 Gene3D G3DSA:1.20.120.1510 434 542 9.3E-13 T 12-10-2018 ALFP_2265 e946ad447e11d3d9cc020ad94b9968b7 918 SUPERFAMILY SSF81301 508 788 1.96E-69 T 12-10-2018 ALFP_2265 e946ad447e11d3d9cc020ad94b9968b7 918 SUPERFAMILY SSF81301 7 268 1.5E-66 T 12-10-2018 ALFP_2265 e946ad447e11d3d9cc020ad94b9968b7 918 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 7 244 1.3E-62 T 12-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 ALFP_2265 e946ad447e11d3d9cc020ad94b9968b7 918 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 534 778 2.5E-63 T 12-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 ALFP_2265 e946ad447e11d3d9cc020ad94b9968b7 918 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 2 918 17.999 T 12-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 ALFP_2265 e946ad447e11d3d9cc020ad94b9968b7 918 Gene3D G3DSA:3.30.460.100 17 252 7.7E-65 T 12-10-2018 ALFP_2265 e946ad447e11d3d9cc020ad94b9968b7 918 Gene3D G3DSA:3.30.460.100 543 784 1.4E-72 T 12-10-2018 ALFP_2265 e946ad447e11d3d9cc020ad94b9968b7 918 SUPERFAMILY SSF81593 270 425 4.39E-35 T 12-10-2018 ALFP_2265 e946ad447e11d3d9cc020ad94b9968b7 918 Gene3D G3DSA:1.20.120.330 785 917 1.1E-39 T 12-10-2018 ALFP_0590 87ea1825cb018e138ae72b182a021193 294 Gene3D G3DSA:1.10.1040.10 160 293 2.4E-38 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ALFP_0590 87ea1825cb018e138ae72b182a021193 294 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 12-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 ALFP_0590 87ea1825cb018e138ae72b182a021193 294 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 161 4.6E-47 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 ALFP_0590 87ea1825cb018e138ae72b182a021193 294 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 284 3.1E-38 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 ALFP_0590 87ea1825cb018e138ae72b182a021193 294 Gene3D G3DSA:3.40.50.720 1 159 4.4E-52 T 12-10-2018 ALFP_0590 87ea1825cb018e138ae72b182a021193 294 PIRSF PIRSF000103 1 291 5.3E-72 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 ALFP_0590 87ea1825cb018e138ae72b182a021193 294 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 3 291 6.6E-121 T 12-10-2018 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 ALFP_0590 87ea1825cb018e138ae72b182a021193 294 SUPERFAMILY SSF51735 2 162 9.62E-46 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0590 87ea1825cb018e138ae72b182a021193 294 SUPERFAMILY SSF48179 163 291 1.13E-36 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_2883 1848c7ad8bd7b4e4ca7268edeb91823b 95 Pfam PF00166 Chaperonin 10 Kd subunit 3 94 8.9E-33 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 ALFP_2883 1848c7ad8bd7b4e4ca7268edeb91823b 95 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 25.62 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 ALFP_2883 1848c7ad8bd7b4e4ca7268edeb91823b 95 SMART SM00883 2 94 1.5E-51 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 ALFP_2883 1848c7ad8bd7b4e4ca7268edeb91823b 95 SUPERFAMILY SSF50129 1 95 2.35E-32 T 12-10-2018 IPR011032 GroES-like superfamily ALFP_2883 1848c7ad8bd7b4e4ca7268edeb91823b 95 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 12-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 ALFP_2883 1848c7ad8bd7b4e4ca7268edeb91823b 95 PRINTS PR00297 10kDa chaperonin signature 3 18 3.4E-31 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 ALFP_2883 1848c7ad8bd7b4e4ca7268edeb91823b 95 PRINTS PR00297 10kDa chaperonin signature 81 94 3.4E-31 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 ALFP_2883 1848c7ad8bd7b4e4ca7268edeb91823b 95 PRINTS PR00297 10kDa chaperonin signature 60 72 3.4E-31 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 ALFP_2883 1848c7ad8bd7b4e4ca7268edeb91823b 95 PRINTS PR00297 10kDa chaperonin signature 25 46 3.4E-31 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 ALFP_2883 1848c7ad8bd7b4e4ca7268edeb91823b 95 Gene3D G3DSA:2.30.33.40 1 95 1.1E-36 T 12-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 ALFP_3526 4b980f11759aa8e372e1f40121f53813 262 Pfam PF01040 UbiA prenyltransferase family 1 241 3.9E-54 T 12-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 ALFP_3526 4b980f11759aa8e372e1f40121f53813 262 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 32 54 - T 12-10-2018 IPR030470 UbiA prenyltransferase conserved site ALFP_3526 4b980f11759aa8e372e1f40121f53813 262 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 1 256 4.1E-82 T 12-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 ALFP_3526 4b980f11759aa8e372e1f40121f53813 262 Gene3D G3DSA:1.10.357.140 1 154 4.4E-12 T 12-10-2018 ALFP_3526 4b980f11759aa8e372e1f40121f53813 262 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 1 258 16.189 T 12-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 ALFP_3455 d14e281f0a88aa6beb7af13e065393ce 352 PIRSF PIRSF000164 10 349 1.4E-42 T 12-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 ALFP_3455 d14e281f0a88aa6beb7af13e065393ce 352 SUPERFAMILY SSF51395 33 337 4.89E-34 T 12-10-2018 ALFP_3455 d14e281f0a88aa6beb7af13e065393ce 352 Gene3D G3DSA:3.20.20.70 33 348 4.4E-44 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_3455 d14e281f0a88aa6beb7af13e065393ce 352 Pfam PF01180 Dihydroorotate dehydrogenase 166 335 9.5E-10 T 12-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 ALFP_2687 d8586346c278c2aefc9662a403a07005 384 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 12-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 ALFP_2687 d8586346c278c2aefc9662a403a07005 384 Gene3D G3DSA:1.20.1090.10 185 384 3.6E-64 T 12-10-2018 ALFP_2687 d8586346c278c2aefc9662a403a07005 384 SUPERFAMILY SSF56796 3 383 1.57E-115 T 12-10-2018 ALFP_2687 d8586346c278c2aefc9662a403a07005 384 Gene3D G3DSA:3.40.50.1970 1 184 1.3E-50 T 12-10-2018 ALFP_2687 d8586346c278c2aefc9662a403a07005 384 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 375 9.3E-114 T 12-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 ALFP_2500 743ced322c65756e09decdbd031df285 281 Pfam PF00892 EamA-like transporter family 3 127 5.8E-20 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_2500 743ced322c65756e09decdbd031df285 281 Pfam PF00892 EamA-like transporter family 137 273 2.2E-22 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_2500 743ced322c65756e09decdbd031df285 281 SUPERFAMILY SSF103481 173 279 1.7E-15 T 12-10-2018 ALFP_2500 743ced322c65756e09decdbd031df285 281 SUPERFAMILY SSF103481 31 129 8.24E-12 T 12-10-2018 ALFP_2310 af0eada812f75c82147839fa6ec4427c 307 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 5 297 1.6E-95 T 12-10-2018 IPR011757 Lytic transglycosylase MltB ALFP_2310 af0eada812f75c82147839fa6ec4427c 307 Pfam PF13406 Transglycosylase SLT domain 5 294 1.5E-83 T 12-10-2018 IPR031304 Transglycosylase SLT domain 2 ALFP_2310 af0eada812f75c82147839fa6ec4427c 307 Gene3D G3DSA:1.10.8.350 10 173 4.7E-90 T 12-10-2018 ALFP_2310 af0eada812f75c82147839fa6ec4427c 307 Gene3D G3DSA:1.10.530.10 33 294 4.7E-90 T 12-10-2018 ALFP_2310 af0eada812f75c82147839fa6ec4427c 307 SUPERFAMILY SSF53955 8 298 6.0E-69 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily ALFP_2426 df9c9d1a133aaab49ecb2e3836d958ab 269 SUPERFAMILY SSF55781 79 262 1.37E-43 T 12-10-2018 ALFP_2426 df9c9d1a133aaab49ecb2e3836d958ab 269 Pfam PF09339 IclR helix-turn-helix domain 16 65 1.7E-13 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_2426 df9c9d1a133aaab49ecb2e3836d958ab 269 SUPERFAMILY SSF46785 13 86 5.03E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2426 df9c9d1a133aaab49ecb2e3836d958ab 269 Gene3D G3DSA:3.30.450.40 87 267 1.5E-43 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_2426 df9c9d1a133aaab49ecb2e3836d958ab 269 SMART SM00346 13 103 5.0E-26 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_2426 df9c9d1a133aaab49ecb2e3836d958ab 269 Gene3D G3DSA:1.10.10.10 2 81 2.6E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2426 df9c9d1a133aaab49ecb2e3836d958ab 269 Pfam PF01614 Bacterial transcriptional regulator 134 257 3.3E-22 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal ALFP_1864 98cb7e3ad0465cd959953a4a0507d6a0 151 SMART SM00347 35 135 1.1E-20 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1864 98cb7e3ad0465cd959953a4a0507d6a0 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 125 145 4.0E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1864 98cb7e3ad0465cd959953a4a0507d6a0 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 95 111 4.0E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1864 98cb7e3ad0465cd959953a4a0507d6a0 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 76 91 4.0E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1864 98cb7e3ad0465cd959953a4a0507d6a0 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 59 75 4.0E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1864 98cb7e3ad0465cd959953a4a0507d6a0 151 Pfam PF01047 MarR family 43 98 1.2E-13 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_1864 98cb7e3ad0465cd959953a4a0507d6a0 151 SUPERFAMILY SSF46785 10 149 1.02E-31 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1864 98cb7e3ad0465cd959953a4a0507d6a0 151 Gene3D G3DSA:1.10.10.10 3 150 8.6E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3033 3896b90762bc2e9bb36c738de0772266 109 SUPERFAMILY SSF81273 66 103 7.06E-9 T 12-10-2018 ALFP_3033 3896b90762bc2e9bb36c738de0772266 109 Gene3D G3DSA:4.10.430.10 57 107 8.1E-13 T 12-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 ALFP_3033 3896b90762bc2e9bb36c738de0772266 109 Pfam PF00816 H-NS histone family 11 96 4.7E-18 T 12-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 ALFP_3033 3896b90762bc2e9bb36c738de0772266 109 SMART SM00528 60 103 1.7E-8 T 12-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 ALFP_0788 90aa6b74fe0b8b0ddd74ece3ae78dec2 579 Gene3D G3DSA:3.30.450.330 230 554 3.2E-103 T 12-10-2018 ALFP_0788 90aa6b74fe0b8b0ddd74ece3ae78dec2 579 Gene3D G3DSA:3.90.1310.30 57 229 2.3E-45 T 12-10-2018 ALFP_0788 90aa6b74fe0b8b0ddd74ece3ae78dec2 579 SUPERFAMILY SSF56601 180 564 9.22E-85 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like ALFP_0788 90aa6b74fe0b8b0ddd74ece3ae78dec2 579 SUPERFAMILY SSF56519 60 228 9.55E-44 T 12-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 ALFP_0788 90aa6b74fe0b8b0ddd74ece3ae78dec2 579 Gene3D G3DSA:3.40.710.10 290 471 3.2E-103 T 12-10-2018 ALFP_0788 90aa6b74fe0b8b0ddd74ece3ae78dec2 579 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 16 566 40.391 T 12-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ALFP_0788 90aa6b74fe0b8b0ddd74ece3ae78dec2 579 Pfam PF00905 Penicillin binding protein transpeptidase domain 255 550 1.6E-69 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 ALFP_0788 90aa6b74fe0b8b0ddd74ece3ae78dec2 579 Pfam PF03717 Penicillin-binding Protein dimerisation domain 64 213 4.0E-20 T 12-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 ALFP_1335 38f6951ff4f75b68e7049b12461a707b 176 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 12 158 1.2E-26 T 12-10-2018 IPR008136 CinA, C-terminal ALFP_1335 38f6951ff4f75b68e7049b12461a707b 176 Pfam PF02464 Competence-damaged protein 8 160 3.0E-38 T 12-10-2018 IPR008136 CinA, C-terminal ALFP_1335 38f6951ff4f75b68e7049b12461a707b 176 SUPERFAMILY SSF142433 8 162 2.09E-39 T 12-10-2018 IPR036653 CinA-like, C-terminal ALFP_1335 38f6951ff4f75b68e7049b12461a707b 176 Gene3D G3DSA:3.90.950.20 2 162 1.9E-43 T 12-10-2018 IPR036653 CinA-like, C-terminal ALFP_0135 19d553bcae263375bec98d12b5d65968 302 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 12 248 1.8E-39 T 12-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 ALFP_0135 19d553bcae263375bec98d12b5d65968 302 SUPERFAMILY SSF52374 9 269 8.89E-78 T 12-10-2018 ALFP_0135 19d553bcae263375bec98d12b5d65968 302 Gene3D G3DSA:3.40.50.620 11 288 2.7E-91 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_0135 19d553bcae263375bec98d12b5d65968 302 Gene3D G3DSA:3.40.50.620 84 231 2.7E-91 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_0135 19d553bcae263375bec98d12b5d65968 302 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 9 301 39.822 T 12-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 ALFP_0135 19d553bcae263375bec98d12b5d65968 302 PRINTS PR00987 Glutamyl-tRNA synthetase signature 26 37 5.8E-13 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 ALFP_0135 19d553bcae263375bec98d12b5d65968 302 PRINTS PR00987 Glutamyl-tRNA synthetase signature 12 24 5.8E-13 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 ALFP_0135 19d553bcae263375bec98d12b5d65968 302 PRINTS PR00987 Glutamyl-tRNA synthetase signature 199 207 5.8E-13 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 ALFP_0135 19d553bcae263375bec98d12b5d65968 302 PRINTS PR00987 Glutamyl-tRNA synthetase signature 41 54 5.8E-13 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 ALFP_0135 19d553bcae263375bec98d12b5d65968 302 PRINTS PR00987 Glutamyl-tRNA synthetase signature 183 193 5.8E-13 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 ALFP_0135 19d553bcae263375bec98d12b5d65968 302 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 9 273 9.6E-109 T 12-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 ALFP_0589 1a7ca63158250ef3786e9e5294800e10 425 Gene3D G3DSA:3.40.50.10180 35 253 1.8E-137 T 12-10-2018 IPR038614 Glycerate kinase, N-terminal domain superfamily Reactome: R-HSA-70350 ALFP_0589 1a7ca63158250ef3786e9e5294800e10 425 SUPERFAMILY SSF82544 4 420 1.44E-152 T 12-10-2018 ALFP_0589 1a7ca63158250ef3786e9e5294800e10 425 Pfam PF05161 MOFRL family 309 414 2.4E-34 T 12-10-2018 IPR007835 MOFRL domain Reactome: R-HSA-70350 ALFP_0589 1a7ca63158250ef3786e9e5294800e10 425 Pfam PF13660 Domain of unknown function (DUF4147) 9 230 3.3E-83 T 12-10-2018 IPR025286 MOFRL-associated domain Reactome: R-HSA-70350 ALFP_0589 1a7ca63158250ef3786e9e5294800e10 425 Gene3D G3DSA:3.40.1480.10 254 415 1.8E-137 T 12-10-2018 IPR037035 Glycerate kinase-like, C-terminal domain superfamily ALFP_3426 a8ea0fb12b26fcda1552bbad3b1c5549 285 PRINTS PR00164 ABC-2 type transport system membrane protein signature 225 244 9.5E-11 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 ALFP_3426 a8ea0fb12b26fcda1552bbad3b1c5549 285 PRINTS PR00164 ABC-2 type transport system membrane protein signature 205 224 9.5E-11 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 ALFP_3426 a8ea0fb12b26fcda1552bbad3b1c5549 285 PRINTS PR00164 ABC-2 type transport system membrane protein signature 87 109 9.5E-11 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 ALFP_3426 a8ea0fb12b26fcda1552bbad3b1c5549 285 Pfam PF01061 ABC-2 type transporter 40 248 6.2E-36 T 12-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 ALFP_3426 a8ea0fb12b26fcda1552bbad3b1c5549 285 PIRSF PIRSF006648 15 282 3.5E-22 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 ALFP_3088 4bf7c95e84fb3d9fb105829e5b8283f1 269 SUPERFAMILY SSF53474 4 266 6.99E-53 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_3088 4bf7c95e84fb3d9fb105829e5b8283f1 269 Gene3D G3DSA:3.40.50.1820 2 267 1.6E-57 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_3088 4bf7c95e84fb3d9fb105829e5b8283f1 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 2.6E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_3088 4bf7c95e84fb3d9fb105829e5b8283f1 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 110 2.6E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_3088 4bf7c95e84fb3d9fb105829e5b8283f1 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 111 124 2.6E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_3088 4bf7c95e84fb3d9fb105829e5b8283f1 269 Pfam PF00561 alpha/beta hydrolase fold 28 192 1.6E-23 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_3088 4bf7c95e84fb3d9fb105829e5b8283f1 269 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 55 66 1.2E-5 T 12-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 ALFP_3088 4bf7c95e84fb3d9fb105829e5b8283f1 269 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 97 111 1.2E-5 T 12-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 ALFP_3088 4bf7c95e84fb3d9fb105829e5b8283f1 269 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 29 37 1.2E-5 T 12-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 ALFP_2598 a4cbe7de021609facc26dc923fde4d25 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 2.2E-39 T 12-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2598 a4cbe7de021609facc26dc923fde4d25 89 SMART SM01387 8 88 3.8E-53 T 12-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_2598 a4cbe7de021609facc26dc923fde4d25 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 3.0E-28 T 12-10-2018 ALFP_2598 a4cbe7de021609facc26dc923fde4d25 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 22.028 T 12-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2598 a4cbe7de021609facc26dc923fde4d25 89 Gene3D G3DSA:1.10.287.10 1 89 1.1E-35 T 12-10-2018 ALFP_2598 a4cbe7de021609facc26dc923fde4d25 89 Pfam PF00312 Ribosomal protein S15 8 88 6.6E-38 T 12-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_2598 a4cbe7de021609facc26dc923fde4d25 89 SUPERFAMILY SSF47060 5 89 2.38E-35 T 12-10-2018 IPR009068 S15/NS1, RNA-binding ALFP_2598 a4cbe7de021609facc26dc923fde4d25 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 12-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_0112 f38f70c6380c11038fb3693af0703973 335 SUPERFAMILY SSF46689 277 325 2.27E-5 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0112 f38f70c6380c11038fb3693af0703973 335 SMART SM00342 241 325 2.9E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0112 f38f70c6380c11038fb3693af0703973 335 SUPERFAMILY SSF46689 224 275 4.21E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0112 f38f70c6380c11038fb3693af0703973 335 Pfam PF12833 Helix-turn-helix domain 247 324 5.0E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_0112 f38f70c6380c11038fb3693af0703973 335 Gene3D G3DSA:1.10.10.60 225 329 1.3E-28 T 12-10-2018 ALFP_0112 f38f70c6380c11038fb3693af0703973 335 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 278 321 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ALFP_0112 f38f70c6380c11038fb3693af0703973 335 Pfam PF14525 AraC-binding-like domain 30 199 2.2E-26 T 12-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like ALFP_2432 46788b1e3179d3e81bf4ed82d43dec04 175 Pfam PF01047 MarR family 35 93 1.4E-14 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2432 46788b1e3179d3e81bf4ed82d43dec04 175 SUPERFAMILY SSF46785 6 144 8.2E-29 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2432 46788b1e3179d3e81bf4ed82d43dec04 175 SMART SM00347 27 128 4.8E-20 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2432 46788b1e3179d3e81bf4ed82d43dec04 175 PRINTS PR00598 Bacterial regulatory protein MarR family signature 52 68 8.6E-5 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2432 46788b1e3179d3e81bf4ed82d43dec04 175 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 8.6E-5 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2432 46788b1e3179d3e81bf4ed82d43dec04 175 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 8.6E-5 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2432 46788b1e3179d3e81bf4ed82d43dec04 175 Gene3D G3DSA:1.10.10.10 3 140 4.6E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2432 46788b1e3179d3e81bf4ed82d43dec04 175 SMART SM00529 53 148 0.0092 T 12-10-2018 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 ALFP_3367 02bb4aa145db8136014504ed01cc570d 335 SUPERFAMILY SSF143631 40 328 6.28E-68 T 12-10-2018 IPR003374 ApbE-like superfamily ALFP_3367 02bb4aa145db8136014504ed01cc570d 335 PIRSF PIRSF006268 8 333 4.3E-57 T 12-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 ALFP_3367 02bb4aa145db8136014504ed01cc570d 335 Gene3D G3DSA:3.10.520.20 27 335 2.2E-68 T 12-10-2018 ALFP_3367 02bb4aa145db8136014504ed01cc570d 335 Pfam PF02424 ApbE family 66 320 5.9E-56 T 12-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 ALFP_1009 3998d8e4bdf4f95974ab253248b9fe2b 190 SUPERFAMILY SSF50199 39 178 2.88E-33 T 12-10-2018 ALFP_1009 3998d8e4bdf4f95974ab253248b9fe2b 190 ProSitePatterns PS01123 Thermonuclease family signature 1. 49 74 - T 12-10-2018 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Reactome: R-HSA-6802952 ALFP_1009 3998d8e4bdf4f95974ab253248b9fe2b 190 Pfam PF00565 Staphylococcal nuclease homologue 64 171 7.6E-20 T 12-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 ALFP_1009 3998d8e4bdf4f95974ab253248b9fe2b 190 Gene3D G3DSA:2.40.50.90 38 183 4.3E-32 T 12-10-2018 IPR035437 SNase-like, OB-fold superfamily ALFP_1009 3998d8e4bdf4f95974ab253248b9fe2b 190 SMART SM00318 38 171 7.8E-29 T 12-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 ALFP_2407 5adcb48f3fa5f4539e5bf207a4336897 384 Pfam PF03054 tRNA methyl transferase 22 383 1.2E-128 T 12-10-2018 ALFP_2407 5adcb48f3fa5f4539e5bf207a4336897 384 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 22 383 1.6E-127 T 12-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 ALFP_2407 5adcb48f3fa5f4539e5bf207a4336897 384 Gene3D G3DSA:2.40.30.10 306 384 9.5E-26 T 12-10-2018 ALFP_2407 5adcb48f3fa5f4539e5bf207a4336897 384 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 21 384 38.321 T 12-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 ALFP_2407 5adcb48f3fa5f4539e5bf207a4336897 384 Gene3D G3DSA:2.30.30.280 232 304 1.3E-23 T 12-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 ALFP_2407 5adcb48f3fa5f4539e5bf207a4336897 384 SUPERFAMILY SSF52402 19 263 3.53E-55 T 12-10-2018 ALFP_2407 5adcb48f3fa5f4539e5bf207a4336897 384 Gene3D G3DSA:3.40.50.620 8 231 1.9E-90 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_2752 b829e28332941c9cbb8e9f1e0181a570 550 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 98 510 2.9E-75 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2752 b829e28332941c9cbb8e9f1e0181a570 550 SUPERFAMILY SSF81442 95 531 8.9E-86 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2752 b829e28332941c9cbb8e9f1e0181a570 550 Gene3D G3DSA:1.20.210.10 86 539 2.7E-150 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_0757 00ab58bdbb184c8f88718c9489353980 349 Gene3D G3DSA:3.50.50.60 2 339 2.7E-132 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0757 00ab58bdbb184c8f88718c9489353980 349 Pfam PF01266 FAD dependent oxidoreductase 2 340 5.3E-55 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 ALFP_0757 00ab58bdbb184c8f88718c9489353980 349 Gene3D G3DSA:3.30.9.10 65 300 2.7E-132 T 12-10-2018 ALFP_0757 00ab58bdbb184c8f88718c9489353980 349 SUPERFAMILY SSF51905 2 299 4.01E-34 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0467 dc60cc28cddf82fa31275f3425989ead 555 Gene3D G3DSA:3.40.50.980 197 362 2.0E-30 T 12-10-2018 ALFP_0467 dc60cc28cddf82fa31275f3425989ead 555 Pfam PF13193 AMP-binding enzyme C-terminal domain 457 534 5.2E-14 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain ALFP_0467 dc60cc28cddf82fa31275f3425989ead 555 SUPERFAMILY SSF56801 31 549 2.88E-110 T 12-10-2018 ALFP_0467 dc60cc28cddf82fa31275f3425989ead 555 Gene3D G3DSA:3.40.50.980 28 184 5.7E-37 T 12-10-2018 ALFP_0467 dc60cc28cddf82fa31275f3425989ead 555 Gene3D G3DSA:3.30.300.310 444 550 5.8E-25 T 12-10-2018 ALFP_0467 dc60cc28cddf82fa31275f3425989ead 555 Gene3D G3DSA:2.30.38.10 363 441 3.7E-18 T 12-10-2018 ALFP_0467 dc60cc28cddf82fa31275f3425989ead 555 Pfam PF00501 AMP-binding enzyme 38 447 2.3E-61 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_0467 dc60cc28cddf82fa31275f3425989ead 555 ProSitePatterns PS00455 Putative AMP-binding domain signature. 203 214 - T 12-10-2018 IPR020845 AMP-binding, conserved site ALFP_3360 21a3f316aee38d3647a7f77b0d0b4652 364 SUPERFAMILY SSF52821 9 155 3.84E-20 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_3360 21a3f316aee38d3647a7f77b0d0b4652 364 SUPERFAMILY SSF52540 146 267 7.64E-5 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3360 21a3f316aee38d3647a7f77b0d0b4652 364 SMART SM00450 2 133 1.8E-8 T 12-10-2018 IPR001763 Rhodanese-like domain ALFP_3360 21a3f316aee38d3647a7f77b0d0b4652 364 Gene3D G3DSA:3.40.250.10 6 134 3.7E-32 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_3360 21a3f316aee38d3647a7f77b0d0b4652 364 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 15 347 2.1E-113 T 12-10-2018 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 ALFP_3360 21a3f316aee38d3647a7f77b0d0b4652 364 Hamap MF_01622 tRNA 2-selenouridine synthase [selU]. 1 363 53.268 T 12-10-2018 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 ALFP_1813 1b753da3c429945a23b8a571b9c6a6de 715 Pfam PF00593 TonB dependent receptor 237 713 1.4E-43 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_1813 1b753da3c429945a23b8a571b9c6a6de 715 SUPERFAMILY SSF56935 54 714 1.31E-97 T 12-10-2018 ALFP_1813 1b753da3c429945a23b8a571b9c6a6de 715 Gene3D G3DSA:2.40.170.20 217 715 5.8E-85 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_1813 1b753da3c429945a23b8a571b9c6a6de 715 Pfam PF07715 TonB-dependent Receptor Plug Domain 84 191 9.2E-13 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_1813 1b753da3c429945a23b8a571b9c6a6de 715 Gene3D G3DSA:2.170.130.10 71 196 2.3E-16 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_3251 586d2105729e6de9b9ea754ef789765e 503 SMART SM00228 100 171 6.3E-15 T 12-10-2018 IPR001478 PDZ domain GO:0005515 ALFP_3251 586d2105729e6de9b9ea754ef789765e 503 Pfam PF13180 PDZ domain 100 179 2.9E-12 T 12-10-2018 IPR001478 PDZ domain GO:0005515 ALFP_3251 586d2105729e6de9b9ea754ef789765e 503 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 53 385 1.4E-94 T 12-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 ALFP_3251 586d2105729e6de9b9ea754ef789765e 503 Gene3D G3DSA:3.30.750.44 46 357 6.9E-89 T 12-10-2018 ALFP_3251 586d2105729e6de9b9ea754ef789765e 503 Gene3D G3DSA:2.30.42.10 100 187 6.9E-89 T 12-10-2018 ALFP_3251 586d2105729e6de9b9ea754ef789765e 503 Pfam PF03572 Peptidase family S41 198 381 1.2E-52 T 12-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 ALFP_3251 586d2105729e6de9b9ea754ef789765e 503 SMART SM00245 173 382 1.2E-65 T 12-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 ALFP_3251 586d2105729e6de9b9ea754ef789765e 503 Gene3D G3DSA:3.90.226.10 188 379 6.9E-89 T 12-10-2018 ALFP_3251 586d2105729e6de9b9ea754ef789765e 503 SUPERFAMILY SSF52096 36 387 1.82E-73 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_3251 586d2105729e6de9b9ea754ef789765e 503 SUPERFAMILY SSF50156 89 183 2.23E-19 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 ALFP_2040 f0ba52f4f56b255d27809b24bd8e7b3b 352 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 318 7.8E-134 T 12-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 ALFP_2040 f0ba52f4f56b255d27809b24bd8e7b3b 352 SUPERFAMILY SSF53067 2 122 3.89E-28 T 12-10-2018 ALFP_2040 f0ba52f4f56b255d27809b24bd8e7b3b 352 Gene3D G3DSA:3.30.420.40 129 298 5.1E-126 T 12-10-2018 ALFP_2040 f0ba52f4f56b255d27809b24bd8e7b3b 352 Gene3D G3DSA:3.30.420.40 3 320 5.1E-126 T 12-10-2018 ALFP_2040 f0ba52f4f56b255d27809b24bd8e7b3b 352 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 311 3.9E-114 T 12-10-2018 IPR017861 Kae1/TsaD family ALFP_2040 f0ba52f4f56b255d27809b24bd8e7b3b 352 Pfam PF00814 Glycoprotease family 24 312 3.4E-99 T 12-10-2018 IPR000905 Gcp-like domain ALFP_2040 f0ba52f4f56b255d27809b24bd8e7b3b 352 SUPERFAMILY SSF53067 101 313 7.77E-44 T 12-10-2018 ALFP_2040 f0ba52f4f56b255d27809b24bd8e7b3b 352 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 8.8E-50 T 12-10-2018 IPR017861 Kae1/TsaD family ALFP_2040 f0ba52f4f56b255d27809b24bd8e7b3b 352 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 8.8E-50 T 12-10-2018 IPR017861 Kae1/TsaD family ALFP_2040 f0ba52f4f56b255d27809b24bd8e7b3b 352 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 8.8E-50 T 12-10-2018 IPR017861 Kae1/TsaD family ALFP_2040 f0ba52f4f56b255d27809b24bd8e7b3b 352 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 8.8E-50 T 12-10-2018 IPR017861 Kae1/TsaD family ALFP_2040 f0ba52f4f56b255d27809b24bd8e7b3b 352 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 8.8E-50 T 12-10-2018 IPR017861 Kae1/TsaD family ALFP_2040 f0ba52f4f56b255d27809b24bd8e7b3b 352 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 268 277 8.8E-50 T 12-10-2018 IPR017861 Kae1/TsaD family ALFP_2040 f0ba52f4f56b255d27809b24bd8e7b3b 352 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 340 61.905 T 12-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 ALFP_3351 baf3545f0fcca6f916ec26d04fd0c791 203 SUPERFAMILY SSF52833 7 90 5.95E-17 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_3351 baf3545f0fcca6f916ec26d04fd0c791 203 Gene3D G3DSA:1.20.1050.10 86 200 8.9E-33 T 12-10-2018 ALFP_3351 baf3545f0fcca6f916ec26d04fd0c791 203 Gene3D G3DSA:3.40.30.10 6 85 2.8E-16 T 12-10-2018 ALFP_3351 baf3545f0fcca6f916ec26d04fd0c791 203 Pfam PF13410 Glutathione S-transferase, C-terminal domain 129 192 2.4E-10 T 12-10-2018 ALFP_3351 baf3545f0fcca6f916ec26d04fd0c791 203 Pfam PF13417 Glutathione S-transferase, N-terminal domain 8 80 4.5E-9 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 ALFP_3351 baf3545f0fcca6f916ec26d04fd0c791 203 SUPERFAMILY SSF47616 81 200 1.35E-26 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily ALFP_0922 5484ee87e0d557857790620863cc5a85 319 Gene3D G3DSA:3.40.190.10 97 293 1.9E-39 T 12-10-2018 ALFP_0922 5484ee87e0d557857790620863cc5a85 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 1.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0922 5484ee87e0d557857790620863cc5a85 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 1.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0922 5484ee87e0d557857790620863cc5a85 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 1.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0922 5484ee87e0d557857790620863cc5a85 319 Gene3D G3DSA:3.40.190.10 169 274 1.9E-39 T 12-10-2018 ALFP_0922 5484ee87e0d557857790620863cc5a85 319 Pfam PF03466 LysR substrate binding domain 93 301 4.2E-37 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0922 5484ee87e0d557857790620863cc5a85 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 3.5E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0922 5484ee87e0d557857790620863cc5a85 319 SUPERFAMILY SSF46785 7 117 4.42E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0922 5484ee87e0d557857790620863cc5a85 319 SUPERFAMILY SSF53850 94 304 1.49E-34 T 12-10-2018 ALFP_0922 5484ee87e0d557857790620863cc5a85 319 Gene3D G3DSA:1.10.10.10 2 89 1.7E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3449 7f95d7cee8b379b662cb932ffdee2022 274 SUPERFAMILY SSF161098 4 252 6.93E-47 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3449 7f95d7cee8b379b662cb932ffdee2022 274 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 6 259 7.3E-88 T 12-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 ALFP_3449 7f95d7cee8b379b662cb932ffdee2022 274 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 5 260 2.3E-100 T 12-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 ALFP_3449 7f95d7cee8b379b662cb932ffdee2022 274 Gene3D G3DSA:1.10.3720.10 4 260 2.6E-56 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3449 7f95d7cee8b379b662cb932ffdee2022 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 65 260 4.2E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_3355 591ec1cf83474651c7afffd75b3f9518 706 Gene3D G3DSA:2.170.130.10 43 179 3.1E-31 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_3355 591ec1cf83474651c7afffd75b3f9518 706 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 689 706 - T 12-10-2018 IPR010917 TonB-dependent receptor, conserved site ALFP_3355 591ec1cf83474651c7afffd75b3f9518 706 Pfam PF00593 TonB dependent receptor 276 705 2.1E-53 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_3355 591ec1cf83474651c7afffd75b3f9518 706 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 68 706 3.9E-104 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 ALFP_3355 591ec1cf83474651c7afffd75b3f9518 706 Pfam PF07715 TonB-dependent Receptor Plug Domain 66 169 7.2E-15 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_3355 591ec1cf83474651c7afffd75b3f9518 706 Gene3D G3DSA:2.40.170.20 180 706 4.3E-160 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_3355 591ec1cf83474651c7afffd75b3f9518 706 SUPERFAMILY SSF56935 29 706 3.66E-121 T 12-10-2018 ALFP_3450 6d31b768639c14161b08f4b356cf62a1 296 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 32 287 1.8E-91 T 12-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 ALFP_3450 6d31b768639c14161b08f4b356cf62a1 296 Gene3D G3DSA:1.10.3720.10 33 289 4.7E-67 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3450 6d31b768639c14161b08f4b356cf62a1 296 SUPERFAMILY SSF161098 36 284 4.19E-55 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3450 6d31b768639c14161b08f4b356cf62a1 296 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 28 287 3.8E-103 T 12-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 ALFP_3450 6d31b768639c14161b08f4b356cf62a1 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 286 7.1E-24 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_3314 1aec272c2df560caa1d7e1cdd9a2b6da 209 Gene3D G3DSA:3.40.50.150 21 187 3.0E-26 T 12-10-2018 ALFP_3314 1aec272c2df560caa1d7e1cdd9a2b6da 209 SUPERFAMILY SSF53335 29 191 1.35E-18 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_3314 1aec272c2df560caa1d7e1cdd9a2b6da 209 Pfam PF10294 Lysine methyltransferase 26 164 6.0E-10 T 12-10-2018 IPR019410 Lysine methyltransferase ALFP_3591 cb86d1fdfd4a139d9b5d76606a4732e6 219 Pfam PF07729 FCD domain 84 205 3.3E-21 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_3591 cb86d1fdfd4a139d9b5d76606a4732e6 219 Gene3D G3DSA:1.10.10.10 5 73 3.5E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3591 cb86d1fdfd4a139d9b5d76606a4732e6 219 SUPERFAMILY SSF48008 79 211 4.71E-21 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_3591 cb86d1fdfd4a139d9b5d76606a4732e6 219 Pfam PF00392 Bacterial regulatory proteins, gntR family 34 71 3.0E-11 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_3591 cb86d1fdfd4a139d9b5d76606a4732e6 219 SUPERFAMILY SSF46785 34 77 2.05E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3591 cb86d1fdfd4a139d9b5d76606a4732e6 219 SMART SM00345 13 73 4.2E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_3591 cb86d1fdfd4a139d9b5d76606a4732e6 219 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 9.0E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_3591 cb86d1fdfd4a139d9b5d76606a4732e6 219 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 9.0E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_3591 cb86d1fdfd4a139d9b5d76606a4732e6 219 SMART SM00895 83 206 1.5E-15 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_3591 cb86d1fdfd4a139d9b5d76606a4732e6 219 Gene3D G3DSA:1.20.120.530 76 213 5.6E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_0413 039965ae1eab5678ae262392d81defe7 296 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 24 287 1.6E-58 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 ALFP_0413 039965ae1eab5678ae262392d81defe7 296 PIRSF PIRSF026649 1 296 2.7E-77 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 ALFP_2196 30184b4f8ea5ecce7d166a019887f1ce 215 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 32 212 3.6E-54 T 12-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like ALFP_2196 30184b4f8ea5ecce7d166a019887f1ce 215 SUPERFAMILY SSF51197 19 213 2.75E-54 T 12-10-2018 ALFP_2196 30184b4f8ea5ecce7d166a019887f1ce 215 Gene3D G3DSA:2.60.120.590 15 215 6.6E-56 T 12-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily ALFP_1069 3d8a6408d2ee445c7586bc9519dfd063 180 Pfam PF07879 PHB/PHA accumulation regulator DNA-binding domain 6 65 3.8E-30 T 12-10-2018 IPR012909 PHA accumulation regulator DNA-binding, N-terminal ALFP_1069 3d8a6408d2ee445c7586bc9519dfd063 180 Pfam PF05233 PHB accumulation regulatory domain 120 159 2.4E-14 T 12-10-2018 IPR007897 PHB accumulation regulatory ALFP_1069 3d8a6408d2ee445c7586bc9519dfd063 180 Pfam PF05233 PHB accumulation regulatory domain 70 108 2.1E-18 T 12-10-2018 IPR007897 PHB accumulation regulatory ALFP_1069 3d8a6408d2ee445c7586bc9519dfd063 180 TIGRFAM TIGR01848 PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR 5 111 4.3E-46 T 12-10-2018 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR GO:0006355 ALFP_0663 c265e36b2ac266224320564f2f4e1d0a 252 Gene3D G3DSA:3.20.20.370 1 252 7.7E-21 T 12-10-2018 ALFP_0663 c265e36b2ac266224320564f2f4e1d0a 252 Pfam PF04794 YdjC-like protein 1 246 1.0E-36 T 12-10-2018 IPR006879 Carbohydrate deacetylase YdjC-like ALFP_0663 c265e36b2ac266224320564f2f4e1d0a 252 SUPERFAMILY SSF88713 1 250 5.56E-42 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 ALFP_1221 c74e792872fa9f9d6ebeaa0b12617f53 167 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 81 156 1.0E-34 T 12-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 ALFP_1221 c74e792872fa9f9d6ebeaa0b12617f53 167 Gene3D G3DSA:2.30.330.10 71 165 4.0E-36 T 12-10-2018 IPR036429 SpoA-like superfamily ALFP_1221 c74e792872fa9f9d6ebeaa0b12617f53 167 SUPERFAMILY SSF101801 82 163 5.49E-27 T 12-10-2018 IPR036429 SpoA-like superfamily ALFP_1221 c74e792872fa9f9d6ebeaa0b12617f53 167 PRINTS PR00956 Flagellar motor switch protein FliN signature 117 130 5.4E-30 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 ALFP_1221 c74e792872fa9f9d6ebeaa0b12617f53 167 PRINTS PR00956 Flagellar motor switch protein FliN signature 101 117 5.4E-30 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 ALFP_1221 c74e792872fa9f9d6ebeaa0b12617f53 167 PRINTS PR00956 Flagellar motor switch protein FliN signature 130 145 5.4E-30 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 ALFP_1221 c74e792872fa9f9d6ebeaa0b12617f53 167 PRINTS PR00956 Flagellar motor switch protein FliN signature 84 100 5.4E-30 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 ALFP_1221 c74e792872fa9f9d6ebeaa0b12617f53 167 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 84 154 9.2E-27 T 12-10-2018 IPR001543 Surface presentation of antigen (SpoA) ALFP_3496 e4b2e13176e638de17590d7192fdbe5f 294 Gene3D G3DSA:2.60.120.10 151 255 2.6E-82 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_3496 e4b2e13176e638de17590d7192fdbe5f 294 Pfam PF05726 Pirin C-terminal cupin domain 184 286 7.5E-28 T 12-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 ALFP_3496 e4b2e13176e638de17590d7192fdbe5f 294 PIRSF PIRSF006232 3 292 4.3E-91 T 12-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 ALFP_3496 e4b2e13176e638de17590d7192fdbe5f 294 Gene3D G3DSA:2.60.120.10 19 281 2.6E-82 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_3496 e4b2e13176e638de17590d7192fdbe5f 294 SUPERFAMILY SSF51182 3 288 3.2E-86 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_3496 e4b2e13176e638de17590d7192fdbe5f 294 Pfam PF02678 Pirin 22 129 2.7E-35 T 12-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 ALFP_0660 723c1f1602ef777971dcb6edebbbfcab 313 Gene3D G3DSA:3.90.550.10 2 163 1.2E-29 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_0660 723c1f1602ef777971dcb6edebbbfcab 313 Pfam PF00535 Glycosyl transferase family 2 5 142 1.8E-27 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 ALFP_0660 723c1f1602ef777971dcb6edebbbfcab 313 SUPERFAMILY SSF53448 13 233 3.43E-32 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_0159 63b07a39a48c747318169c8a0e837238 432 PIRSF PIRSF006066 5 432 1.1E-102 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_0159 63b07a39a48c747318169c8a0e837238 432 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 12 424 5.2E-99 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_0159 63b07a39a48c747318169c8a0e837238 432 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 429 1.3E-108 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_0995 4d36b87664a2d6d2c92793c50a03e881 478 PIRSF PIRSF000204 2 478 3.0E-209 T 12-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 ALFP_0995 4d36b87664a2d6d2c92793c50a03e881 478 SUPERFAMILY SSF52467 306 478 1.01E-74 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily ALFP_0995 4d36b87664a2d6d2c92793c50a03e881 478 Gene3D G3DSA:3.40.50.1220 302 478 9.5E-84 T 12-10-2018 ALFP_0995 4d36b87664a2d6d2c92793c50a03e881 478 Pfam PF02233 NAD(P) transhydrogenase beta subunit 8 476 3.9E-190 T 12-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 ALFP_2087 d44ab05f8812a01eb458613b75f89ffd 274 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 1 247 2.7E-45 T 12-10-2018 IPR017592 Pilus assembly, Flp-type CpaB ALFP_2087 d44ab05f8812a01eb458613b75f89ffd 274 SMART SM00858 34 97 2.8E-6 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 ALFP_2087 d44ab05f8812a01eb458613b75f89ffd 274 Pfam PF08666 SAF domain 36 96 1.7E-7 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 ALFP_2087 d44ab05f8812a01eb458613b75f89ffd 274 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 103 207 3.2E-25 T 12-10-2018 IPR031571 Flp pilus assembly protein RcpC/CpaB domain ALFP_2761 fbc29dea4297da992ec74ec7acd370cf 714 Pfam PF04185 Phosphoesterase family 36 441 1.0E-114 T 12-10-2018 IPR007312 Phosphoesterase GO:0016788 ALFP_2761 fbc29dea4297da992ec74ec7acd370cf 714 Gene3D G3DSA:3.40.720.10 286 487 4.4E-50 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 ALFP_2761 fbc29dea4297da992ec74ec7acd370cf 714 Gene3D G3DSA:3.40.720.10 25 197 3.1E-31 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 ALFP_2761 fbc29dea4297da992ec74ec7acd370cf 714 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 7 709 4.6E-293 T 12-10-2018 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 ALFP_2761 fbc29dea4297da992ec74ec7acd370cf 714 Pfam PF05506 Domain of unknown function (DUF756) 613 695 2.1E-23 T 12-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 ALFP_2761 fbc29dea4297da992ec74ec7acd370cf 714 Pfam PF05506 Domain of unknown function (DUF756) 513 601 4.7E-25 T 12-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 ALFP_3107 c33b3ade2c3d96ce6d761ff3a54728a5 149 Pfam PF00578 AhpC/TSA family 21 129 1.4E-17 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 ALFP_3107 c33b3ade2c3d96ce6d761ff3a54728a5 149 SUPERFAMILY SSF52833 4 147 3.19E-32 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_3107 c33b3ade2c3d96ce6d761ff3a54728a5 149 ProSitePatterns PS00194 Thioredoxin family active site. 41 59 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 ALFP_3107 c33b3ade2c3d96ce6d761ff3a54728a5 149 Gene3D G3DSA:3.40.30.10 18 149 3.9E-35 T 12-10-2018 ALFP_1500 eb57d571060c0352a3efbfa2f2ecda07 237 Gene3D G3DSA:3.40.50.300 7 236 1.0E-66 T 12-10-2018 ALFP_1500 eb57d571060c0352a3efbfa2f2ecda07 237 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1500 eb57d571060c0352a3efbfa2f2ecda07 237 SUPERFAMILY SSF52540 9 230 3.12E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1500 eb57d571060c0352a3efbfa2f2ecda07 237 SMART SM00382 38 227 7.1E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1500 eb57d571060c0352a3efbfa2f2ecda07 237 Pfam PF00005 ABC transporter 29 177 1.1E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3578 bf7dc30db247f12d7647e1dae3d76bdf 244 Pfam PF14518 Iron-containing redox enzyme 44 211 7.5E-35 T 12-10-2018 ALFP_3578 bf7dc30db247f12d7647e1dae3d76bdf 244 SUPERFAMILY SSF48613 9 226 1.28E-48 T 12-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 ALFP_3578 bf7dc30db247f12d7647e1dae3d76bdf 244 Gene3D G3DSA:1.20.910.10 1 241 1.2E-55 T 12-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 ALFP_3578 bf7dc30db247f12d7647e1dae3d76bdf 244 SMART SM01236 78 181 7.2E-26 T 12-10-2018 ALFP_0685 e21babfa65f96ec8cfff284d96000d42 143 Pfam PF08534 Redoxin 2 138 3.2E-31 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 ALFP_0685 e21babfa65f96ec8cfff284d96000d42 143 Gene3D G3DSA:3.40.30.10 2 141 9.0E-57 T 12-10-2018 ALFP_0685 e21babfa65f96ec8cfff284d96000d42 143 SUPERFAMILY SSF52833 4 140 2.56E-33 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_1338 089e642da2e7137114fa3da479d89f1e 386 Pfam PF04303 PrpF protein 4 380 3.6E-114 T 12-10-2018 IPR007400 PrpF protein ALFP_1338 089e642da2e7137114fa3da479d89f1e 386 SUPERFAMILY SSF54506 175 381 2.35E-61 T 12-10-2018 ALFP_1338 089e642da2e7137114fa3da479d89f1e 386 SUPERFAMILY SSF54506 2 170 5.18E-65 T 12-10-2018 ALFP_1338 089e642da2e7137114fa3da479d89f1e 386 Gene3D G3DSA:3.10.310.10 8 377 2.8E-145 T 12-10-2018 ALFP_1338 089e642da2e7137114fa3da479d89f1e 386 Gene3D G3DSA:3.10.310.10 170 363 2.8E-145 T 12-10-2018 ALFP_0223 5ff0df8204600e8dad5d6874a024df1f 655 Gene3D G3DSA:3.40.50.12780 343 475 6.7E-37 T 12-10-2018 ALFP_0223 5ff0df8204600e8dad5d6874a024df1f 655 ProSitePatterns PS00455 Putative AMP-binding domain signature. 196 207 - T 12-10-2018 IPR020845 AMP-binding, conserved site ALFP_0223 5ff0df8204600e8dad5d6874a024df1f 655 Gene3D G3DSA:3.40.50.12780 6 342 5.4E-51 T 12-10-2018 ALFP_0223 5ff0df8204600e8dad5d6874a024df1f 655 SUPERFAMILY SSF56801 12 614 1.57E-112 T 12-10-2018 ALFP_0223 5ff0df8204600e8dad5d6874a024df1f 655 Pfam PF00501 AMP-binding enzyme 22 482 9.5E-95 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_1137 ff930d5c763359d1bf3db71482b89057 280 Pfam PF01522 Polysaccharide deacetylase 56 219 5.2E-34 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 ALFP_1137 ff930d5c763359d1bf3db71482b89057 280 Gene3D G3DSA:3.20.20.370 2 252 1.0E-65 T 12-10-2018 ALFP_1137 ff930d5c763359d1bf3db71482b89057 280 SUPERFAMILY SSF88713 22 261 2.47E-41 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 ALFP_2340 f27fe8c1a1dba5198c0139a8063eac54 427 Gene3D G3DSA:3.90.1150.10 21 398 5.5E-130 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_2340 f27fe8c1a1dba5198c0139a8063eac54 427 SUPERFAMILY SSF53383 4 402 1.86E-92 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2340 f27fe8c1a1dba5198c0139a8063eac54 427 Gene3D G3DSA:3.40.640.10 53 294 5.5E-130 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_2340 f27fe8c1a1dba5198c0139a8063eac54 427 Pfam PF00155 Aminotransferase class I and II 36 393 3.5E-45 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_3672 2cc407eb5aa9c58f7a6cfc756819ed7f 156 Gene3D G3DSA:1.10.455.10 2 155 2.2E-59 T 12-10-2018 IPR036823 Ribosomal protein S7 domain superfamily ALFP_3672 2cc407eb5aa9c58f7a6cfc756819ed7f 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 2.5E-66 T 12-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 ALFP_3672 2cc407eb5aa9c58f7a6cfc756819ed7f 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 12-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3672 2cc407eb5aa9c58f7a6cfc756819ed7f 156 SUPERFAMILY SSF47973 2 149 2.49E-60 T 12-10-2018 IPR036823 Ribosomal protein S7 domain superfamily ALFP_3672 2cc407eb5aa9c58f7a6cfc756819ed7f 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 1.3E-65 T 12-10-2018 IPR023798 Ribosomal protein S7 domain ALFP_3672 2cc407eb5aa9c58f7a6cfc756819ed7f 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.166 T 12-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 ALFP_3672 2cc407eb5aa9c58f7a6cfc756819ed7f 156 PIRSF PIRSF002122 3 156 9.4E-58 T 12-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 ALFP_3523 2478869830d3564c746bd92c8fb48791 260 Pfam PF02104 SURF1 family 23 233 2.4E-29 T 12-10-2018 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_1731 c9d21850f95a3f6d29b90b69495622ae 295 Gene3D G3DSA:3.40.50.1820 48 294 2.5E-13 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1731 c9d21850f95a3f6d29b90b69495622ae 295 SUPERFAMILY SSF53474 92 262 6.19E-16 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1593 f6f930c45a57627b69eb870e727cd415 114 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 42 91 3.6E-14 T 12-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 ALFP_1593 f6f930c45a57627b69eb870e727cd415 114 Pfam PF02627 Carboxymuconolactone decarboxylase family 25 107 1.3E-20 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 ALFP_1593 f6f930c45a57627b69eb870e727cd415 114 SUPERFAMILY SSF69118 6 109 9.16E-29 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 ALFP_1593 f6f930c45a57627b69eb870e727cd415 114 Gene3D G3DSA:1.20.1290.10 1 114 6.0E-35 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 ALFP_2718 594e32ec6ef3933c23914ae20ccd69cd 148 Pfam PF09361 Phasin protein 10 101 2.5E-6 T 12-10-2018 IPR018968 Phasin ALFP_0165 ef1795bf8aeb22d0773dc31fe242e207 159 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_0165 ef1795bf8aeb22d0773dc31fe242e207 159 TIGRFAM TIGR00754 bfr: bacterioferritin 1 156 6.8E-73 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_0165 ef1795bf8aeb22d0773dc31fe242e207 159 SUPERFAMILY SSF47240 1 156 1.73E-52 T 12-10-2018 IPR009078 Ferritin-like superfamily ALFP_0165 ef1795bf8aeb22d0773dc31fe242e207 159 Pfam PF00210 Ferritin-like domain 8 144 1.9E-39 T 12-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 ALFP_0165 ef1795bf8aeb22d0773dc31fe242e207 159 PIRSF PIRSF002560 1 157 4.2E-72 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_0165 ef1795bf8aeb22d0773dc31fe242e207 159 PRINTS PR00601 Bacterioferritin signature 107 127 7.4E-65 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_0165 ef1795bf8aeb22d0773dc31fe242e207 159 PRINTS PR00601 Bacterioferritin signature 44 64 7.4E-65 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_0165 ef1795bf8aeb22d0773dc31fe242e207 159 PRINTS PR00601 Bacterioferritin signature 65 85 7.4E-65 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_0165 ef1795bf8aeb22d0773dc31fe242e207 159 PRINTS PR00601 Bacterioferritin signature 3 22 7.4E-65 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_0165 ef1795bf8aeb22d0773dc31fe242e207 159 PRINTS PR00601 Bacterioferritin signature 128 149 7.4E-65 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_0165 ef1795bf8aeb22d0773dc31fe242e207 159 PRINTS PR00601 Bacterioferritin signature 23 43 7.4E-65 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_0165 ef1795bf8aeb22d0773dc31fe242e207 159 PRINTS PR00601 Bacterioferritin signature 86 106 7.4E-65 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_0165 ef1795bf8aeb22d0773dc31fe242e207 159 Gene3D G3DSA:1.20.1260.10 1 158 1.9E-67 T 12-10-2018 IPR012347 Ferritin-like ALFP_1127 fa906d4e04f2a98d6cc09c69892d32f5 227 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 4 222 31.709 T 12-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 ALFP_1127 fa906d4e04f2a98d6cc09c69892d32f5 227 Gene3D G3DSA:3.30.70.260 130 201 9.3E-73 T 12-10-2018 ALFP_1127 fa906d4e04f2a98d6cc09c69892d32f5 227 SUPERFAMILY SSF100950 3 151 2.76E-42 T 12-10-2018 IPR037171 NagB/RpiA transferase-like ALFP_1127 fa906d4e04f2a98d6cc09c69892d32f5 227 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 8 219 2.5E-59 T 12-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 ALFP_1127 fa906d4e04f2a98d6cc09c69892d32f5 227 Gene3D G3DSA:3.40.50.1360 8 218 9.3E-73 T 12-10-2018 ALFP_1127 fa906d4e04f2a98d6cc09c69892d32f5 227 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 56 218 8.8E-55 T 12-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 ALFP_1127 fa906d4e04f2a98d6cc09c69892d32f5 227 SUPERFAMILY SSF75445 132 203 4.58E-21 T 12-10-2018 ALFP_0702 b2545fd7e568c90608edec0d2913b20f 158 Pfam PF02130 Uncharacterized protein family UPF0054 24 148 3.9E-31 T 12-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 ALFP_0702 b2545fd7e568c90608edec0d2913b20f 158 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 48 149 3.5E-32 T 12-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 ALFP_0702 b2545fd7e568c90608edec0d2913b20f 158 Gene3D G3DSA:3.40.390.30 3 158 3.9E-40 T 12-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 ALFP_0702 b2545fd7e568c90608edec0d2913b20f 158 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 5 153 20.179 T 12-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 ALFP_0702 b2545fd7e568c90608edec0d2913b20f 158 SUPERFAMILY SSF55486 35 155 4.15E-38 T 12-10-2018 ALFP_1184 247bb56b2eb56b71f43124f79d437671 312 Pfam PF00691 OmpA family 157 253 1.3E-11 T 12-10-2018 IPR006665 OmpA-like domain ALFP_1184 247bb56b2eb56b71f43124f79d437671 312 SUPERFAMILY SSF103088 151 261 2.75E-19 T 12-10-2018 IPR036737 OmpA-like domain superfamily ALFP_1184 247bb56b2eb56b71f43124f79d437671 312 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 12 64 8.2E-20 T 12-10-2018 IPR025713 Motility protein B, N-terminal domain ALFP_1184 247bb56b2eb56b71f43124f79d437671 312 Gene3D G3DSA:3.30.1330.60 104 290 1.1E-53 T 12-10-2018 IPR036737 OmpA-like domain superfamily ALFP_2086 2265318eb58df854901093d70e31920e 456 PRINTS PR00811 Bacterial general secretion pathway protein D signature 362 380 1.9E-11 T 12-10-2018 IPR001775 GspD/PilQ family ALFP_2086 2265318eb58df854901093d70e31920e 456 PRINTS PR00811 Bacterial general secretion pathway protein D signature 237 261 1.9E-11 T 12-10-2018 IPR001775 GspD/PilQ family ALFP_2086 2265318eb58df854901093d70e31920e 456 PRINTS PR00811 Bacterial general secretion pathway protein D signature 385 399 1.9E-11 T 12-10-2018 IPR001775 GspD/PilQ family ALFP_2086 2265318eb58df854901093d70e31920e 456 PRINTS PR00811 Bacterial general secretion pathway protein D signature 164 174 1.9E-11 T 12-10-2018 IPR001775 GspD/PilQ family ALFP_2086 2265318eb58df854901093d70e31920e 456 Pfam PF00263 Bacterial type II and III secretion system protein 241 397 1.1E-41 T 12-10-2018 IPR004846 Type II/III secretion system GO:0009306 ALFP_2086 2265318eb58df854901093d70e31920e 456 Pfam PF13629 Pilus formation protein N terminal region 29 97 3.5E-13 T 12-10-2018 IPR032789 Pilus formation protein, N-terminal ALFP_2086 2265318eb58df854901093d70e31920e 456 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 343 376 - T 12-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 ALFP_0465 1c8f8256e69629e86b9d7314a9804acf 421 SUPERFAMILY SSF53474 26 419 1.75E-16 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0465 1c8f8256e69629e86b9d7314a9804acf 421 Gene3D G3DSA:3.40.50.1820 252 415 4.1E-6 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0465 1c8f8256e69629e86b9d7314a9804acf 421 Gene3D G3DSA:3.40.50.1820 28 193 2.0E-6 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2813 0804d470f06a2c8ecb24ee438e092840 319 Gene3D G3DSA:3.40.50.1100 54 150 4.7E-113 T 12-10-2018 ALFP_2813 0804d470f06a2c8ecb24ee438e092840 319 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 20 306 1.5E-74 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme ALFP_2813 0804d470f06a2c8ecb24ee438e092840 319 Gene3D G3DSA:3.40.50.1100 16 310 4.7E-113 T 12-10-2018 ALFP_2813 0804d470f06a2c8ecb24ee438e092840 319 SUPERFAMILY SSF53686 7 314 7.6E-90 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme ALFP_2813 0804d470f06a2c8ecb24ee438e092840 319 PIRSF PIRSF006278 10 318 4.4E-7 T 12-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase ALFP_3609 14e4d298b68b1d2ef4b0ad94bac0efdd 128 SUPERFAMILY SSF54913 23 126 1.85E-34 T 12-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta ALFP_3609 14e4d298b68b1d2ef4b0ad94bac0efdd 128 Pfam PF03091 CutA1 divalent ion tolerance protein 27 123 6.9E-31 T 12-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 ALFP_3609 14e4d298b68b1d2ef4b0ad94bac0efdd 128 Gene3D G3DSA:3.30.70.120 12 126 5.8E-34 T 12-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal ALFP_2315 4d13f8f4efda835ece67846541a06b5b 415 SUPERFAMILY SSF48452 40 175 2.92E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2315 4d13f8f4efda835ece67846541a06b5b 415 Gene3D G3DSA:1.25.40.10 19 352 3.3E-22 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2315 4d13f8f4efda835ece67846541a06b5b 415 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 6 413 32.415 T 12-10-2018 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 ALFP_0900 f703a6cd16a6d9f231711ebdc1497baf 260 SUPERFAMILY SSF55729 27 233 5.83E-40 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_0900 f703a6cd16a6d9f231711ebdc1497baf 260 Pfam PF13444 Acetyltransferase (GNAT) domain 42 142 6.5E-35 T 12-10-2018 ALFP_0900 f703a6cd16a6d9f231711ebdc1497baf 260 Gene3D G3DSA:3.40.630.30 27 168 1.4E-25 T 12-10-2018 ALFP_0724 18e14f1769818ec2b47355a39d25b582 436 SUPERFAMILY SSF75304 5 426 4.84E-95 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_0724 18e14f1769818ec2b47355a39d25b582 436 Pfam PF01425 Amidase 26 417 1.1E-64 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_0724 18e14f1769818ec2b47355a39d25b582 436 Gene3D G3DSA:3.90.1300.10 8 430 3.4E-101 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_3725 a68a54569309bb0db5bc8183d2ee0ed9 299 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 50 269 2.3E-44 T 12-10-2018 IPR018713 Domain of unknown function DUF2236 ALFP_2039 3ac542548f982e658fa87e9408cfab22 213 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 11 210 4.8E-62 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 ALFP_2039 3ac542548f982e658fa87e9408cfab22 213 SMART SM01207 15 201 1.5E-89 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 ALFP_2039 3ac542548f982e658fa87e9408cfab22 213 Pfam PF02660 Glycerol-3-phosphate acyltransferase 16 200 6.4E-53 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 ALFP_2039 3ac542548f982e658fa87e9408cfab22 213 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 12 209 21.017 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 ALFP_2719 d8938f4a76b15044d03b1a7412750ec3 374 Pfam PF12698 ABC-2 family transporter protein 25 363 5.3E-31 T 12-10-2018 ALFP_1881 d93437b5da5cc42686b3bcf47df27aa4 128 Gene3D G3DSA:3.30.1330.40 1 127 1.2E-45 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_1881 d93437b5da5cc42686b3bcf47df27aa4 128 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 126 3.3E-43 T 12-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 ALFP_1881 d93437b5da5cc42686b3bcf47df27aa4 128 Pfam PF01042 Endoribonuclease L-PSP 9 126 2.7E-39 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 ALFP_1881 d93437b5da5cc42686b3bcf47df27aa4 128 SUPERFAMILY SSF55298 1 126 1.41E-40 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_3525 34646939fac63c103fa9863a16528224 357 Pfam PF02628 Cytochrome oxidase assembly protein 10 320 4.8E-82 T 12-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 ALFP_0993 319f25e075afb5a422fc48aa2c21867a 372 Gene3D G3DSA:3.40.50.720 132 317 1.3E-127 T 12-10-2018 ALFP_0993 319f25e075afb5a422fc48aa2c21867a 372 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 136 365 5.8E-69 T 12-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain ALFP_0993 319f25e075afb5a422fc48aa2c21867a 372 SUPERFAMILY SSF51735 132 315 7.38E-36 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0993 319f25e075afb5a422fc48aa2c21867a 372 SUPERFAMILY SSF52283 1 163 9.35E-40 T 12-10-2018 ALFP_0993 319f25e075afb5a422fc48aa2c21867a 372 SMART SM01003 4 132 5.5E-47 T 12-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal ALFP_0993 319f25e075afb5a422fc48aa2c21867a 372 Gene3D G3DSA:3.40.50.720 4 364 1.3E-127 T 12-10-2018 ALFP_0993 319f25e075afb5a422fc48aa2c21867a 372 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 10 132 4.1E-33 T 12-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal ALFP_0993 319f25e075afb5a422fc48aa2c21867a 372 SMART SM01002 141 310 3.7E-82 T 12-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain ALFP_0993 319f25e075afb5a422fc48aa2c21867a 372 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 165 190 - T 12-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 ALFP_2949 2e5fbcf0675e14738c69d06e17bf76e5 429 Gene3D G3DSA:3.90.380.10 32 427 2.7E-93 T 12-10-2018 ALFP_2949 2e5fbcf0675e14738c69d06e17bf76e5 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 199 221 9.7E-28 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2949 2e5fbcf0675e14738c69d06e17bf76e5 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 70 85 9.7E-28 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2949 2e5fbcf0675e14738c69d06e17bf76e5 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 112 132 9.7E-28 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2949 2e5fbcf0675e14738c69d06e17bf76e5 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 160 186 9.7E-28 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2949 2e5fbcf0675e14738c69d06e17bf76e5 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 39 64 9.7E-28 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2949 2e5fbcf0675e14738c69d06e17bf76e5 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 91 111 9.7E-28 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 ALFP_2949 2e5fbcf0675e14738c69d06e17bf76e5 429 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 98 121 - T 12-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 ALFP_2949 2e5fbcf0675e14738c69d06e17bf76e5 429 Gene3D G3DSA:2.102.10.10 53 185 2.7E-93 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_2949 2e5fbcf0675e14738c69d06e17bf76e5 429 Pfam PF00355 Rieske [2Fe-2S] domain 55 139 8.7E-20 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ALFP_2949 2e5fbcf0675e14738c69d06e17bf76e5 429 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 207 428 2.9E-18 T 12-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 ALFP_2949 2e5fbcf0675e14738c69d06e17bf76e5 429 SUPERFAMILY SSF55961 186 427 7.22E-42 T 12-10-2018 ALFP_2949 2e5fbcf0675e14738c69d06e17bf76e5 429 SUPERFAMILY SSF50022 29 175 9.95E-44 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_0203 604be2990c67e7235a65d54afccf7e99 415 SUPERFAMILY SSF51905 1 414 1.42E-46 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0203 604be2990c67e7235a65d54afccf7e99 415 SUPERFAMILY SSF54373 271 361 3.4E-9 T 12-10-2018 ALFP_0203 604be2990c67e7235a65d54afccf7e99 415 Gene3D G3DSA:3.50.50.60 103 406 1.0E-38 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0203 604be2990c67e7235a65d54afccf7e99 415 Gene3D G3DSA:3.50.50.60 1 67 1.1E-12 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0203 604be2990c67e7235a65d54afccf7e99 415 Pfam PF01266 FAD dependent oxidoreductase 2 399 2.9E-57 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 ALFP_0203 604be2990c67e7235a65d54afccf7e99 415 Gene3D G3DSA:3.30.9.10 134 363 1.0E-38 T 12-10-2018 ALFP_2345 f0fa839f25c5931b449370d6a5e9b9d8 167 SUPERFAMILY SSF55729 2 153 6.86E-25 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_2345 f0fa839f25c5931b449370d6a5e9b9d8 167 Gene3D G3DSA:3.40.630.30 1 154 3.3E-25 T 12-10-2018 ALFP_2345 f0fa839f25c5931b449370d6a5e9b9d8 167 Pfam PF00583 Acetyltransferase (GNAT) family 51 141 1.2E-12 T 12-10-2018 IPR000182 GNAT domain ALFP_2553 5aa52f80d08f123e6d4ed0a5e6d11981 213 Pfam PF03922 OmpW family 32 213 2.0E-57 T 12-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 ALFP_2553 5aa52f80d08f123e6d4ed0a5e6d11981 213 Gene3D G3DSA:2.40.160.20 31 213 1.8E-66 T 12-10-2018 ALFP_2553 5aa52f80d08f123e6d4ed0a5e6d11981 213 SUPERFAMILY SSF56925 32 213 7.32E-32 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel ALFP_3391 85c787d284f737b32aebcb39c2484727 287 Pfam PF00892 EamA-like transporter family 149 281 8.6E-14 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_3391 85c787d284f737b32aebcb39c2484727 287 Pfam PF00892 EamA-like transporter family 8 132 3.1E-13 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_3391 85c787d284f737b32aebcb39c2484727 287 SUPERFAMILY SSF103481 41 134 8.89E-8 T 12-10-2018 ALFP_3391 85c787d284f737b32aebcb39c2484727 287 SUPERFAMILY SSF103481 182 281 6.02E-9 T 12-10-2018 ALFP_0762 10f59c439444254d9eb5ed13bcd59701 216 Gene3D G3DSA:3.30.470.10 1 80 4.3E-13 T 12-10-2018 ALFP_0762 10f59c439444254d9eb5ed13bcd59701 216 SUPERFAMILY SSF56752 7 208 2.62E-38 T 12-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 ALFP_0762 10f59c439444254d9eb5ed13bcd59701 216 Gene3D G3DSA:3.20.10.10 81 212 2.8E-32 T 12-10-2018 ALFP_0762 10f59c439444254d9eb5ed13bcd59701 216 Pfam PF01063 Amino-transferase class IV 8 207 1.4E-31 T 12-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 ALFP_2614 3a2278550684540fd66dad94f458f975 256 SUPERFAMILY SSF160443 167 247 6.67E-17 T 12-10-2018 IPR036063 Smr domain superfamily ALFP_2614 3a2278550684540fd66dad94f458f975 256 Pfam PF01713 Smr domain 168 245 1.3E-20 T 12-10-2018 IPR002625 Smr domain ALFP_2614 3a2278550684540fd66dad94f458f975 256 SMART SM00463 165 249 4.2E-11 T 12-10-2018 IPR002625 Smr domain ALFP_2614 3a2278550684540fd66dad94f458f975 256 Gene3D G3DSA:3.30.1370.110 125 253 2.4E-34 T 12-10-2018 ALFP_2461 f1d11cc76162492b8900ec334cecd464 280 Pfam PF01380 SIS domain 131 216 5.6E-9 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 ALFP_2461 f1d11cc76162492b8900ec334cecd464 280 SUPERFAMILY SSF53697 103 235 2.89E-9 T 12-10-2018 ALFP_2461 f1d11cc76162492b8900ec334cecd464 280 Gene3D G3DSA:1.10.10.10 3 83 3.5E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2461 f1d11cc76162492b8900ec334cecd464 280 SUPERFAMILY SSF46689 7 80 9.68E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2461 f1d11cc76162492b8900ec334cecd464 280 Gene3D G3DSA:3.40.50.10490 96 276 7.7E-19 T 12-10-2018 ALFP_2461 f1d11cc76162492b8900ec334cecd464 280 Pfam PF01418 Helix-turn-helix domain, rpiR family 13 78 1.0E-9 T 12-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 ALFP_0887 04a5d43aba369a8c000a4d6a862f67b5 320 Hamap MF_00492 Transaldolase [tal]. 2 317 47.114 T 12-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 ALFP_0887 04a5d43aba369a8c000a4d6a862f67b5 320 ProSitePatterns PS00958 Transaldolase active site. 123 140 - T 12-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 ALFP_0887 04a5d43aba369a8c000a4d6a862f67b5 320 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 12-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 ALFP_0887 04a5d43aba369a8c000a4d6a862f67b5 320 SUPERFAMILY SSF51569 1 316 7.95E-103 T 12-10-2018 ALFP_0887 04a5d43aba369a8c000a4d6a862f67b5 320 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 14 309 7.0E-92 T 12-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 ALFP_0887 04a5d43aba369a8c000a4d6a862f67b5 320 TIGRFAM TIGR00874 talAB: transaldolase 4 315 8.1E-131 T 12-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 ALFP_0887 04a5d43aba369a8c000a4d6a862f67b5 320 Gene3D G3DSA:3.20.20.70 1 320 9.4E-124 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0568 32f561b736bdc8fdc00fd46f77e71d4b 298 Pfam PF01545 Cation efflux family 20 210 1.1E-44 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 ALFP_0568 32f561b736bdc8fdc00fd46f77e71d4b 298 Pfam PF16916 Dimerisation domain of Zinc Transporter 218 293 2.5E-21 T 12-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain ALFP_0568 32f561b736bdc8fdc00fd46f77e71d4b 298 Gene3D G3DSA:3.30.70.1350 214 295 5.9E-21 T 12-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 ALFP_0568 32f561b736bdc8fdc00fd46f77e71d4b 298 SUPERFAMILY SSF160240 216 294 8.89E-21 T 12-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 ALFP_0568 32f561b736bdc8fdc00fd46f77e71d4b 298 SUPERFAMILY SSF161111 12 214 1.7E-53 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily ALFP_0568 32f561b736bdc8fdc00fd46f77e71d4b 298 Gene3D G3DSA:1.20.1510.10 15 212 2.4E-58 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily ALFP_0568 32f561b736bdc8fdc00fd46f77e71d4b 298 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 16 293 2.3E-63 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 ALFP_0007 f98d64fa7b2c268ac1f0ac7825f65c59 429 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 9 420 1.4E-94 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_0007 f98d64fa7b2c268ac1f0ac7825f65c59 429 PIRSF PIRSF006066 1 429 4.6E-91 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_0007 f98d64fa7b2c268ac1f0ac7825f65c59 429 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 19 426 6.2E-93 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_1345 dda4c51c9fbbf7cf230a4147e17f2704 530 Gene3D G3DSA:3.50.50.60 192 331 2.5E-17 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1345 dda4c51c9fbbf7cf230a4147e17f2704 530 Pfam PF01593 Flavin containing amine oxidoreductase 22 321 5.6E-18 T 12-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 ALFP_1345 dda4c51c9fbbf7cf230a4147e17f2704 530 Gene3D G3DSA:3.50.50.60 10 103 5.8E-15 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1345 dda4c51c9fbbf7cf230a4147e17f2704 530 SUPERFAMILY SSF51905 7 529 1.14E-48 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2281 fa84b5c91154caa377cb41967d2a79c8 416 Gene3D G3DSA:1.20.1250.20 219 414 5.4E-18 T 12-10-2018 ALFP_2281 fa84b5c91154caa377cb41967d2a79c8 416 Gene3D G3DSA:1.20.1250.20 16 199 7.5E-24 T 12-10-2018 ALFP_2281 fa84b5c91154caa377cb41967d2a79c8 416 SUPERFAMILY SSF103473 14 405 7.72E-53 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2281 fa84b5c91154caa377cb41967d2a79c8 416 Pfam PF07690 Major Facilitator Superfamily 36 373 1.0E-34 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_1295 c177b3287a5d9eb38490efb9c749cc1b 160 Gene3D G3DSA:3.40.50.850 1 159 5.8E-13 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_1295 c177b3287a5d9eb38490efb9c749cc1b 160 SUPERFAMILY SSF52499 1 157 6.93E-18 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_1295 c177b3287a5d9eb38490efb9c749cc1b 160 Pfam PF00857 Isochorismatase family 78 149 2.0E-9 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 ALFP_0131 41f763a2f9bb8ce82544af469f7287c2 144 PIRSF PIRSF015875 1 144 6.2E-40 T 12-10-2018 IPR007418 Protein of unknown function DUF474 ALFP_1405 9b76c89dbdcec55c06e2be3a7da4e91e 254 Gene3D G3DSA:3.90.550.10 1 250 1.2E-90 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_1405 9b76c89dbdcec55c06e2be3a7da4e91e 254 Pfam PF02348 Cytidylyltransferase 5 222 2.1E-55 T 12-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 ALFP_1405 9b76c89dbdcec55c06e2be3a7da4e91e 254 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 244 6.0E-85 T 12-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 ALFP_1405 9b76c89dbdcec55c06e2be3a7da4e91e 254 SUPERFAMILY SSF53448 1 253 3.52E-60 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_1405 9b76c89dbdcec55c06e2be3a7da4e91e 254 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 251 41.17 T 12-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 ALFP_1741 38c0ab04c08fdd49e22ac6fd36e3cb06 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 275 1.2E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_1741 38c0ab04c08fdd49e22ac6fd36e3cb06 279 SUPERFAMILY SSF161098 71 257 2.35E-24 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1741 38c0ab04c08fdd49e22ac6fd36e3cb06 279 Gene3D G3DSA:1.10.3720.10 68 272 4.5E-19 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1741 38c0ab04c08fdd49e22ac6fd36e3cb06 279 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 15 53 2.7E-5 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain ALFP_0293 a3250533a44e2118a95489efff0b3329 238 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0293 a3250533a44e2118a95489efff0b3329 238 Pfam PF00005 ABC transporter 20 165 1.1E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0293 a3250533a44e2118a95489efff0b3329 238 SUPERFAMILY SSF52540 4 230 1.49E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0293 a3250533a44e2118a95489efff0b3329 238 SMART SM00382 29 215 4.6E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0293 a3250533a44e2118a95489efff0b3329 238 Gene3D G3DSA:3.40.50.300 2 238 7.0E-55 T 12-10-2018 ALFP_2554 516d0a928dec5a63832a48cf2a2f1a3c 260 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_2554 516d0a928dec5a63832a48cf2a2f1a3c 260 Pfam PF00005 ABC transporter 29 176 2.9E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2554 516d0a928dec5a63832a48cf2a2f1a3c 260 Gene3D G3DSA:3.40.50.300 6 249 8.2E-56 T 12-10-2018 ALFP_2554 516d0a928dec5a63832a48cf2a2f1a3c 260 SUPERFAMILY SSF52540 9 246 5.76E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2554 516d0a928dec5a63832a48cf2a2f1a3c 260 SMART SM00382 35 221 8.0E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2643 37b00c3a5d4473e2d302662fd8d44cc8 167 Gene3D G3DSA:1.20.120.1220 4 136 9.3E-6 T 12-10-2018 ALFP_2643 37b00c3a5d4473e2d302662fd8d44cc8 167 Pfam PF01478 Type IV leader peptidase family 12 121 1.5E-11 T 12-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 ALFP_3653 eb11ee04cd293494b6daaaf8f21877ac 363 Gene3D G3DSA:2.40.110.10 132 228 2.9E-10 T 12-10-2018 ALFP_3653 eb11ee04cd293494b6daaaf8f21877ac 363 SUPERFAMILY SSF56645 24 222 7.59E-23 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 ALFP_2902 99c7902123808b6af68562ab65b26fa5 85 SUPERFAMILY SSF54862 4 71 2.24E-18 T 12-10-2018 ALFP_2902 99c7902123808b6af68562ab65b26fa5 85 Gene3D G3DSA:3.30.70.20 2 81 1.8E-31 T 12-10-2018 ALFP_2902 99c7902123808b6af68562ab65b26fa5 85 Pfam PF00037 4Fe-4S binding domain 5 25 3.4E-5 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ALFP_2902 99c7902123808b6af68562ab65b26fa5 85 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site ALFP_3435 2f85125fda8a8d7e399b9b43f8a6f0e3 134 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 107 7.0E-36 T 12-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 ALFP_3435 2f85125fda8a8d7e399b9b43f8a6f0e3 134 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 7 111 33.586 T 12-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 ALFP_3435 2f85125fda8a8d7e399b9b43f8a6f0e3 134 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 110 5.0E-20 T 12-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 ALFP_3435 2f85125fda8a8d7e399b9b43f8a6f0e3 134 Gene3D G3DSA:3.10.20.400 5 98 7.2E-40 T 12-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 ALFP_3435 2f85125fda8a8d7e399b9b43f8a6f0e3 134 SUPERFAMILY SSF141734 7 114 9.42E-49 T 12-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 ALFP_2925 5d0f6720194b0acb3edcecbb55394b7b 304 Gene3D G3DSA:3.40.190.10 100 283 8.5E-33 T 12-10-2018 ALFP_2925 5d0f6720194b0acb3edcecbb55394b7b 304 Pfam PF03466 LysR substrate binding domain 93 299 7.8E-30 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_2925 5d0f6720194b0acb3edcecbb55394b7b 304 Gene3D G3DSA:1.10.10.10 7 98 2.0E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2925 5d0f6720194b0acb3edcecbb55394b7b 304 SUPERFAMILY SSF53850 93 300 3.98E-32 T 12-10-2018 ALFP_2925 5d0f6720194b0acb3edcecbb55394b7b 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 1.9E-13 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2925 5d0f6720194b0acb3edcecbb55394b7b 304 Gene3D G3DSA:3.40.190.10 172 273 8.5E-33 T 12-10-2018 ALFP_2925 5d0f6720194b0acb3edcecbb55394b7b 304 SUPERFAMILY SSF46785 6 116 3.75E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0674 ed4b57d740187f1822a6eddc9a26dc30 203 Gene3D G3DSA:3.90.550.10 2 200 5.1E-50 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_0674 ed4b57d740187f1822a6eddc9a26dc30 203 SUPERFAMILY SSF53448 7 193 4.51E-32 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_0674 ed4b57d740187f1822a6eddc9a26dc30 203 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 5 196 26.862 T 12-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 ALFP_0674 ed4b57d740187f1822a6eddc9a26dc30 203 Pfam PF12804 MobA-like NTP transferase domain 9 166 7.0E-28 T 12-10-2018 IPR025877 MobA-like NTP transferase ALFP_0674 ed4b57d740187f1822a6eddc9a26dc30 203 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 7 193 3.5E-56 T 12-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 ALFP_0376 de4b1eed24570a99dd13fa451c30791c 414 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 27 394 29.969 T 12-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 ALFP_0376 de4b1eed24570a99dd13fa451c30791c 414 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 37 392 1.5E-142 T 12-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 ALFP_0376 de4b1eed24570a99dd13fa451c30791c 414 Gene3D G3DSA:3.40.50.1820 42 382 5.2E-142 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0376 de4b1eed24570a99dd13fa451c30791c 414 Pfam PF00561 alpha/beta hydrolase fold 67 382 8.0E-36 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_0376 de4b1eed24570a99dd13fa451c30791c 414 SUPERFAMILY SSF53474 33 391 1.13E-104 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0376 de4b1eed24570a99dd13fa451c30791c 414 Gene3D G3DSA:1.10.1740.110 203 312 5.2E-142 T 12-10-2018 ALFP_0376 de4b1eed24570a99dd13fa451c30791c 414 PIRSF PIRSF000443 10 401 4.7E-145 T 12-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 ALFP_2058 546078f6f7bc4b635ec831f52f40093a 273 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 7 113 1.7E-6 T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 ALFP_2058 546078f6f7bc4b635ec831f52f40093a 273 SUPERFAMILY SSF52833 156 272 7.06E-29 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_2058 546078f6f7bc4b635ec831f52f40093a 273 Gene3D G3DSA:3.40.30.10 136 273 3.2E-28 T 12-10-2018 ALFP_2058 546078f6f7bc4b635ec831f52f40093a 273 ProSitePatterns PS00194 Thioredoxin family active site. 167 185 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 ALFP_2058 546078f6f7bc4b635ec831f52f40093a 273 Pfam PF00578 AhpC/TSA family 158 253 4.4E-10 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 ALFP_1316 929609be003f45b06884faa304368ceb 151 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 145 1.3E-19 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 ALFP_1316 929609be003f45b06884faa304368ceb 151 Pfam PF08281 Sigma-70, region 4 89 141 4.3E-14 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ALFP_1316 929609be003f45b06884faa304368ceb 151 SUPERFAMILY SSF88659 72 147 3.55E-14 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like ALFP_1316 929609be003f45b06884faa304368ceb 151 Gene3D G3DSA:1.10.10.10 67 148 3.9E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1316 929609be003f45b06884faa304368ceb 151 SUPERFAMILY SSF88946 1 71 2.98E-6 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_2862 360be7046e718dc38b05c5c8e6480295 187 Gene3D G3DSA:3.40.30.10 1 186 4.3E-62 T 12-10-2018 ALFP_2862 360be7046e718dc38b05c5c8e6480295 187 Pfam PF00578 AhpC/TSA family 9 132 3.3E-34 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 ALFP_2862 360be7046e718dc38b05c5c8e6480295 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 182 5.4E-5 T 12-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 ALFP_2862 360be7046e718dc38b05c5c8e6480295 187 SUPERFAMILY SSF52833 1 186 1.4E-57 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_2862 360be7046e718dc38b05c5c8e6480295 187 PIRSF PIRSF000239 1 187 1.3E-56 T 12-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 ALFP_2862 360be7046e718dc38b05c5c8e6480295 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 9.6E-106 T 12-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 ALFP_0748 38fedbf1d4e7646bcd24029c3234ee9b 170 SMART SM01001 9 160 3.0E-90 T 12-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 ALFP_0748 38fedbf1d4e7646bcd24029c3234ee9b 170 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 11 160 6.1E-58 T 12-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 ALFP_0748 38fedbf1d4e7646bcd24029c3234ee9b 170 PIRSF PIRSF001338 6 165 8.2E-62 T 12-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 ALFP_0748 38fedbf1d4e7646bcd24029c3234ee9b 170 Pfam PF00731 AIR carboxylase 11 158 2.3E-58 T 12-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 ALFP_0748 38fedbf1d4e7646bcd24029c3234ee9b 170 SUPERFAMILY SSF52255 10 163 1.09E-59 T 12-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 ALFP_0748 38fedbf1d4e7646bcd24029c3234ee9b 170 Gene3D G3DSA:3.40.50.7700 1 169 4.0E-68 T 12-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 ALFP_0748 38fedbf1d4e7646bcd24029c3234ee9b 170 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 11 164 29.921 T 12-10-2018 IPR033747 Class I PurE ALFP_3216 a468d95fd2073ab5fdf70475d5b48fd2 232 Gene3D G3DSA:3.30.1360.40 1 90 3.2E-11 T 12-10-2018 ALFP_3216 a468d95fd2073ab5fdf70475d5b48fd2 232 SMART SM00796 5 210 4.6E-80 T 12-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D ALFP_3216 a468d95fd2073ab5fdf70475d5b48fd2 232 SUPERFAMILY SSF160467 10 101 2.88E-12 T 12-10-2018 ALFP_3216 a468d95fd2073ab5fdf70475d5b48fd2 232 SUPERFAMILY SSF50891 96 226 4.93E-45 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily ALFP_3216 a468d95fd2073ab5fdf70475d5b48fd2 232 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 11 219 2.0E-53 T 12-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 ALFP_3216 a468d95fd2073ab5fdf70475d5b48fd2 232 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 8 210 4.3E-64 T 12-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D ALFP_3216 a468d95fd2073ab5fdf70475d5b48fd2 232 Gene3D G3DSA:2.40.100.10 95 230 7.0E-55 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily ALFP_0186 6ee6e22a344bcb50c05792f288c53478 274 SUPERFAMILY SSF63829 23 267 5.62E-30 T 12-10-2018 ALFP_0186 6ee6e22a344bcb50c05792f288c53478 274 Pfam PF01436 NHL repeat 163 189 1.0E-4 T 12-10-2018 IPR001258 NHL repeat GO:0005515 ALFP_0186 6ee6e22a344bcb50c05792f288c53478 274 Gene3D G3DSA:2.120.10.30 10 272 1.1E-38 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like ALFP_2249 278bd4beba91dc043cafd58469482df1 769 Gene3D G3DSA:2.120.10.90 524 752 2.8E-18 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal ALFP_2249 278bd4beba91dc043cafd58469482df1 769 Gene3D G3DSA:3.30.1360.40 243 359 6.8E-183 T 12-10-2018 ALFP_2249 278bd4beba91dc043cafd58469482df1 769 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 16 755 1.5E-226 T 12-10-2018 ALFP_2249 278bd4beba91dc043cafd58469482df1 769 SUPERFAMILY SSF101904 526 758 7.85E-43 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal ALFP_2249 278bd4beba91dc043cafd58469482df1 769 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 38 495 1.9E-127 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 ALFP_2249 278bd4beba91dc043cafd58469482df1 769 Gene3D G3DSA:3.90.199.10 38 511 6.8E-183 T 12-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 ALFP_2249 278bd4beba91dc043cafd58469482df1 769 Gene3D G3DSA:1.10.268.10 397 482 6.8E-183 T 12-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 ALFP_2249 278bd4beba91dc043cafd58469482df1 769 SMART SM00434 17 489 8.9E-212 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 ALFP_2249 278bd4beba91dc043cafd58469482df1 769 SUPERFAMILY SSF56719 37 511 2.88E-146 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 ALFP_2249 278bd4beba91dc043cafd58469482df1 769 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 10 765 32.293 T 12-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ALFP_2249 278bd4beba91dc043cafd58469482df1 769 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 673 709 2.6E-5 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 ALFP_2249 278bd4beba91dc043cafd58469482df1 769 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 570 598 1.1 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 ALFP_2190 ecb50cbdf27d657dce8a44d635b77acb 180 Pfam PF13420 Acetyltransferase (GNAT) domain 19 163 6.3E-18 T 12-10-2018 ALFP_2190 ecb50cbdf27d657dce8a44d635b77acb 180 SUPERFAMILY SSF55729 16 172 1.14E-33 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_2190 ecb50cbdf27d657dce8a44d635b77acb 180 Gene3D G3DSA:3.40.630.30 3 180 1.5E-53 T 12-10-2018 ALFP_3668 cb9f7150123e356a4831c5262fa0c3a2 607 Gene3D G3DSA:3.40.190.100 83 213 1.1E-42 T 12-10-2018 ALFP_3668 cb9f7150123e356a4831c5262fa0c3a2 607 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 1 286 1.9E-55 T 12-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 ALFP_3668 cb9f7150123e356a4831c5262fa0c3a2 607 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 429 592 7.6E-30 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_3668 cb9f7150123e356a4831c5262fa0c3a2 607 SUPERFAMILY SSF161098 406 590 1.2E-43 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3668 cb9f7150123e356a4831c5262fa0c3a2 607 SUPERFAMILY SSF53850 1 296 1.63E-66 T 12-10-2018 ALFP_3668 cb9f7150123e356a4831c5262fa0c3a2 607 Gene3D G3DSA:1.10.3720.10 404 595 3.9E-40 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3668 cb9f7150123e356a4831c5262fa0c3a2 607 Gene3D G3DSA:3.40.190.10 1 295 1.1E-42 T 12-10-2018 ALFP_0212 b83e16631da6e284735f6c7b005333ab 884 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 147 679 6.0E-69 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_0212 b83e16631da6e284735f6c7b005333ab 884 Pfam PF11874 Domain of unknown function (DUF3394) 684 873 7.3E-58 T 12-10-2018 IPR021814 Protein of unknown function DUF3394 ALFP_0212 b83e16631da6e284735f6c7b005333ab 884 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 43 748 1.3E-231 T 12-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ ALFP_3246 6242936feccbfbdb6e00c12240556ed1 298 Pfam PF00696 Amino acid kinase family 31 274 2.1E-45 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 ALFP_3246 6242936feccbfbdb6e00c12240556ed1 298 Hamap MF_00082 Acetylglutamate kinase [argB]. 30 290 48.876 T 12-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 ALFP_3246 6242936feccbfbdb6e00c12240556ed1 298 PRINTS PR00474 Glutamate 5-kinase family signature 247 267 1.2E-6 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 ALFP_3246 6242936feccbfbdb6e00c12240556ed1 298 PRINTS PR00474 Glutamate 5-kinase family signature 62 76 1.2E-6 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 ALFP_3246 6242936feccbfbdb6e00c12240556ed1 298 PRINTS PR00474 Glutamate 5-kinase family signature 197 224 1.2E-6 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 ALFP_3246 6242936feccbfbdb6e00c12240556ed1 298 TIGRFAM TIGR00761 argB: acetylglutamate kinase 32 272 2.1E-73 T 12-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 ALFP_3246 6242936feccbfbdb6e00c12240556ed1 298 PIRSF PIRSF000728 16 297 3.0E-102 T 12-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 ALFP_3246 6242936feccbfbdb6e00c12240556ed1 298 SUPERFAMILY SSF53633 11 297 1.83E-88 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily ALFP_3246 6242936feccbfbdb6e00c12240556ed1 298 Gene3D G3DSA:3.40.1160.10 7 298 1.0E-97 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily ALFP_1189 8c070498f6de94ab7c8a97ec5c820c8b 352 Gene3D G3DSA:3.40.50.2300 1 133 7.5E-31 T 12-10-2018 ALFP_1189 8c070498f6de94ab7c8a97ec5c820c8b 352 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 346 40.877 T 12-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 ALFP_1189 8c070498f6de94ab7c8a97ec5c820c8b 352 Pfam PF01339 CheB methylesterase 162 341 4.6E-61 T 12-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 ALFP_1189 8c070498f6de94ab7c8a97ec5c820c8b 352 Gene3D G3DSA:3.40.50.180 152 349 1.3E-77 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal ALFP_1189 8c070498f6de94ab7c8a97ec5c820c8b 352 SUPERFAMILY SSF52738 157 344 3.66E-73 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal ALFP_1189 8c070498f6de94ab7c8a97ec5c820c8b 352 PIRSF PIRSF000876 1 349 4.6E-134 T 12-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 ALFP_1189 8c070498f6de94ab7c8a97ec5c820c8b 352 SUPERFAMILY SSF52172 1 108 1.18E-28 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_1189 8c070498f6de94ab7c8a97ec5c820c8b 352 SMART SM00448 4 116 8.0E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_1189 8c070498f6de94ab7c8a97ec5c820c8b 352 Pfam PF00072 Response regulator receiver domain 6 108 2.5E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2410 f95dbce12bb342329809709af9852089 76 Pfam PF04328 Selenoprotein, putative 19 76 8.6E-26 T 12-10-2018 IPR007423 Selenoprotein, putative ALFP_3146 a8847afd0dad7d1476b94dd91643dcae 338 Gene3D G3DSA:3.40.190.10 126 221 4.9E-50 T 12-10-2018 ALFP_3146 a8847afd0dad7d1476b94dd91643dcae 338 SMART SM00062 34 263 2.5E-40 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_3146 a8847afd0dad7d1476b94dd91643dcae 338 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 57 70 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site ALFP_3146 a8847afd0dad7d1476b94dd91643dcae 338 Gene3D G3DSA:3.40.190.10 24 253 4.9E-50 T 12-10-2018 ALFP_3146 a8847afd0dad7d1476b94dd91643dcae 338 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 253 1.2E-28 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_3146 a8847afd0dad7d1476b94dd91643dcae 338 SUPERFAMILY SSF53850 25 254 6.0E-46 T 12-10-2018 ALFP_1468 4687eac1b05f758a106535f1198e9f27 152 SMART SM00422 9 77 1.6E-23 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1468 4687eac1b05f758a106535f1198e9f27 152 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 9 148 4.0E-61 T 12-10-2018 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 ALFP_1468 4687eac1b05f758a106535f1198e9f27 152 Gene3D G3DSA:1.10.1660.10 4 132 1.2E-32 T 12-10-2018 ALFP_1468 4687eac1b05f758a106535f1198e9f27 152 ProSitePatterns PS00552 MerR-type HTH domain signature. 12 34 - T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1468 4687eac1b05f758a106535f1198e9f27 152 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 10 21 1.4E-11 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1468 4687eac1b05f758a106535f1198e9f27 152 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 21 34 1.4E-11 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1468 4687eac1b05f758a106535f1198e9f27 152 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 44 64 1.4E-11 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1468 4687eac1b05f758a106535f1198e9f27 152 SUPERFAMILY SSF46955 9 131 1.87E-27 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily ALFP_1468 4687eac1b05f758a106535f1198e9f27 152 Pfam PF13411 MerR HTH family regulatory protein 10 76 1.9E-14 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_1001 b326e7982ab6cb881171a160560b091f 199 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 2 197 6.3E-96 T 12-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 ALFP_1001 b326e7982ab6cb881171a160560b091f 199 SUPERFAMILY SSF52218 1 198 5.37E-63 T 12-10-2018 IPR029039 Flavoprotein-like superfamily ALFP_1001 b326e7982ab6cb881171a160560b091f 199 Gene3D G3DSA:3.40.50.360 1 199 5.1E-76 T 12-10-2018 IPR029039 Flavoprotein-like superfamily ALFP_1001 b326e7982ab6cb881171a160560b091f 199 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 1 199 47.688 T 12-10-2018 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 ALFP_1001 b326e7982ab6cb881171a160560b091f 199 Pfam PF03358 NADPH-dependent FMN reductase 4 145 1.8E-12 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 ALFP_3289 62115759dd0ca03c986f51cb52802d4c 288 Pfam PF00483 Nucleotidyl transferase 2 237 4.2E-70 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 ALFP_3289 62115759dd0ca03c986f51cb52802d4c 288 Gene3D G3DSA:3.90.550.10 1 288 9.5E-86 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_3289 62115759dd0ca03c986f51cb52802d4c 288 SUPERFAMILY SSF53448 1 285 3.03E-93 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_3289 62115759dd0ca03c986f51cb52802d4c 288 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 286 3.5E-158 T 12-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 ALFP_0968 a830d1617c84eedd7d2436af35454511 282 PIRSF PIRSF004808 11 265 2.6E-60 T 12-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 ALFP_0968 a830d1617c84eedd7d2436af35454511 282 Gene3D G3DSA:1.10.8.590 197 258 1.8E-17 T 12-10-2018 ALFP_0968 a830d1617c84eedd7d2436af35454511 282 SUPERFAMILY SSF75217 7 178 1.83E-31 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases ALFP_0968 a830d1617c84eedd7d2436af35454511 282 Pfam PF00588 SpoU rRNA Methylase family 16 169 2.2E-33 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 ALFP_0968 a830d1617c84eedd7d2436af35454511 282 Gene3D G3DSA:3.40.1280.10 12 182 5.7E-55 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal ALFP_0968 a830d1617c84eedd7d2436af35454511 282 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 15 258 1.9E-53 T 12-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 ALFP_3368 161be19c09d6d11b16082fbbbbf19461 523 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 242 255 - T 12-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_3368 161be19c09d6d11b16082fbbbbf19461 523 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 42 500 32.509 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_3368 161be19c09d6d11b16082fbbbbf19461 523 Gene3D G3DSA:3.40.50.10490 94 268 7.3E-157 T 12-10-2018 ALFP_3368 161be19c09d6d11b16082fbbbbf19461 523 SUPERFAMILY SSF53697 28 522 2.43E-148 T 12-10-2018 ALFP_3368 161be19c09d6d11b16082fbbbbf19461 523 PRINTS PR00662 Glucose-6-phosphate isomerase signature 459 473 3.4E-43 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_3368 161be19c09d6d11b16082fbbbbf19461 523 PRINTS PR00662 Glucose-6-phosphate isomerase signature 238 256 3.4E-43 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_3368 161be19c09d6d11b16082fbbbbf19461 523 PRINTS PR00662 Glucose-6-phosphate isomerase signature 473 486 3.4E-43 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_3368 161be19c09d6d11b16082fbbbbf19461 523 PRINTS PR00662 Glucose-6-phosphate isomerase signature 129 148 3.4E-43 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_3368 161be19c09d6d11b16082fbbbbf19461 523 PRINTS PR00662 Glucose-6-phosphate isomerase signature 315 336 3.4E-43 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_3368 161be19c09d6d11b16082fbbbbf19461 523 PRINTS PR00662 Glucose-6-phosphate isomerase signature 441 459 3.4E-43 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_3368 161be19c09d6d11b16082fbbbbf19461 523 Gene3D G3DSA:3.40.50.10490 31 482 7.3E-157 T 12-10-2018 ALFP_3368 161be19c09d6d11b16082fbbbbf19461 523 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 473 490 - T 12-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_3368 161be19c09d6d11b16082fbbbbf19461 523 Gene3D G3DSA:1.10.1390.10 483 523 3.6E-17 T 12-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_3368 161be19c09d6d11b16082fbbbbf19461 523 Pfam PF00342 Phosphoglucose isomerase 50 516 2.7E-137 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 ALFP_3658 afc4f21c248fa3526784b0dd42746f9b 138 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 12-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3658 afc4f21c248fa3526784b0dd42746f9b 138 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 12-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3658 afc4f21c248fa3526784b0dd42746f9b 138 PRINTS PR00060 Ribosomal protein L16 signature 58 87 7.1E-41 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3658 afc4f21c248fa3526784b0dd42746f9b 138 PRINTS PR00060 Ribosomal protein L16 signature 88 117 7.1E-41 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3658 afc4f21c248fa3526784b0dd42746f9b 138 PRINTS PR00060 Ribosomal protein L16 signature 42 53 7.1E-41 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3658 afc4f21c248fa3526784b0dd42746f9b 138 PRINTS PR00060 Ribosomal protein L16 signature 24 36 7.1E-41 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3658 afc4f21c248fa3526784b0dd42746f9b 138 Gene3D G3DSA:3.90.1170.10 1 138 3.2E-56 T 12-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 ALFP_3658 afc4f21c248fa3526784b0dd42746f9b 138 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 8.9E-50 T 12-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 ALFP_3658 afc4f21c248fa3526784b0dd42746f9b 138 SUPERFAMILY SSF54686 1 134 3.14E-54 T 12-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 ALFP_3658 afc4f21c248fa3526784b0dd42746f9b 138 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 1.1E-59 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3658 afc4f21c248fa3526784b0dd42746f9b 138 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 38.899 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1252 a0f05dea1c4bbf47af319ef80f825062 530 SUPERFAMILY SSF53300 314 486 1.51E-11 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily ALFP_1252 a0f05dea1c4bbf47af319ef80f825062 530 PRINTS PR01217 Proline rich extensin signature 234 250 9.4E-9 T 12-10-2018 ALFP_1252 a0f05dea1c4bbf47af319ef80f825062 530 PRINTS PR01217 Proline rich extensin signature 251 268 9.4E-9 T 12-10-2018 ALFP_1252 a0f05dea1c4bbf47af319ef80f825062 530 PRINTS PR01217 Proline rich extensin signature 211 232 9.4E-9 T 12-10-2018 ALFP_1252 a0f05dea1c4bbf47af319ef80f825062 530 PRINTS PR01217 Proline rich extensin signature 144 160 9.4E-9 T 12-10-2018 ALFP_1252 a0f05dea1c4bbf47af319ef80f825062 530 PRINTS PR01217 Proline rich extensin signature 270 295 9.4E-9 T 12-10-2018 ALFP_1252 a0f05dea1c4bbf47af319ef80f825062 530 Pfam PF13519 von Willebrand factor type A domain 359 456 1.4E-8 T 12-10-2018 IPR002035 von Willebrand factor, type A ALFP_2527 78cd8feae14256db9109409517e86613 79 Gene3D G3DSA:1.10.1200.10 1 79 8.3E-31 T 12-10-2018 IPR036736 ACP-like superfamily ALFP_2527 78cd8feae14256db9109409517e86613 79 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 76 5.0E-4 T 12-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 ALFP_2527 78cd8feae14256db9109409517e86613 79 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 12-10-2018 IPR006162 Phosphopantetheine attachment site ALFP_2527 78cd8feae14256db9109409517e86613 79 Pfam PF00550 Phosphopantetheine attachment site 6 73 1.1E-17 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain ALFP_2527 78cd8feae14256db9109409517e86613 79 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 2 76 2.0E-35 T 12-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 ALFP_2527 78cd8feae14256db9109409517e86613 79 SUPERFAMILY SSF47336 2 76 5.5E-24 T 12-10-2018 IPR036736 ACP-like superfamily ALFP_2527 78cd8feae14256db9109409517e86613 79 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.719 T 12-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 ALFP_0750 3246d8b2f0693662aeb6da6157999b6d 341 Pfam PF03481 Putative GTP-binding controlling metal-binding 210 338 1.7E-19 T 12-10-2018 IPR005145 Putative GTP-binding controlling metal-binding domain ALFP_0750 3246d8b2f0693662aeb6da6157999b6d 341 Pfam PF01300 Telomere recombination 19 197 3.3E-50 T 12-10-2018 IPR006070 YrdC-like domain GO:0003725 ALFP_0750 3246d8b2f0693662aeb6da6157999b6d 341 Gene3D G3DSA:3.90.870.10 2 222 6.0E-74 T 12-10-2018 ALFP_0750 3246d8b2f0693662aeb6da6157999b6d 341 PIRSF PIRSF004930 1 341 1.9E-98 T 12-10-2018 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 ALFP_0750 3246d8b2f0693662aeb6da6157999b6d 341 SUPERFAMILY SSF55821 6 219 1.28E-55 T 12-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily ALFP_0750 3246d8b2f0693662aeb6da6157999b6d 341 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 6 219 6.2E-50 T 12-10-2018 IPR006070 YrdC-like domain GO:0003725 ALFP_0750 3246d8b2f0693662aeb6da6157999b6d 341 Gene3D G3DSA:3.40.50.11030 223 340 2.1E-14 T 12-10-2018 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily ALFP_2403 bfae9054cac34bd26c8f169ff7792c8c 185 Gene3D G3DSA:1.20.1050.10 61 174 8.5E-66 T 12-10-2018 ALFP_2403 bfae9054cac34bd26c8f169ff7792c8c 185 SUPERFAMILY SSF52833 2 68 1.78E-14 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_2403 bfae9054cac34bd26c8f169ff7792c8c 185 SUPERFAMILY SSF47616 51 183 3.08E-27 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily ALFP_2403 bfae9054cac34bd26c8f169ff7792c8c 185 Gene3D G3DSA:3.40.30.10 1 177 8.5E-66 T 12-10-2018 ALFP_2403 bfae9054cac34bd26c8f169ff7792c8c 185 Pfam PF13410 Glutathione S-transferase, C-terminal domain 102 166 2.6E-11 T 12-10-2018 ALFP_2403 bfae9054cac34bd26c8f169ff7792c8c 185 Pfam PF13417 Glutathione S-transferase, N-terminal domain 2 57 1.6E-10 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 ALFP_2907 1cc4567ff667db05c029f109366f7028 306 Gene3D G3DSA:3.30.1780.10 9 302 6.8E-57 T 12-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 ALFP_2907 1cc4567ff667db05c029f109366f7028 306 Gene3D G3DSA:3.40.50.720 126 287 6.8E-57 T 12-10-2018 ALFP_2907 1cc4567ff667db05c029f109366f7028 306 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 8 302 1.1E-26 T 12-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 ALFP_2907 1cc4567ff667db05c029f109366f7028 306 PIRSF PIRSF001439 1 306 3.8E-45 T 12-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 ALFP_2907 1cc4567ff667db05c029f109366f7028 306 SUPERFAMILY SSF51735 6 303 3.38E-60 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3026 790996418456594353bcfc650a787abc 143 Pfam PF03960 ArsC family 7 115 5.9E-20 T 12-10-2018 IPR006660 Arsenate reductase-like ALFP_3026 790996418456594353bcfc650a787abc 143 Gene3D G3DSA:3.40.30.10 1 141 1.4E-58 T 12-10-2018 ALFP_3026 790996418456594353bcfc650a787abc 143 SUPERFAMILY SSF52833 3 138 2.24E-38 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_3026 790996418456594353bcfc650a787abc 143 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 116 9.7E-42 T 12-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 ALFP_2071 6561f50a923488e4c18e59c329fa425f 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 203 1.5E-21 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_2071 6561f50a923488e4c18e59c329fa425f 212 Gene3D G3DSA:1.10.10.10 140 205 1.8E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2071 6561f50a923488e4c18e59c329fa425f 212 SUPERFAMILY SSF52172 15 166 8.4E-32 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_2071 6561f50a923488e4c18e59c329fa425f 212 Pfam PF00072 Response regulator receiver domain 14 123 2.8E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_2071 6561f50a923488e4c18e59c329fa425f 212 SUPERFAMILY SSF46894 146 205 1.13E-17 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ALFP_2071 6561f50a923488e4c18e59c329fa425f 212 SMART SM00421 147 204 6.2E-24 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_2071 6561f50a923488e4c18e59c329fa425f 212 Gene3D G3DSA:3.40.50.2300 9 137 4.1E-39 T 12-10-2018 ALFP_2071 6561f50a923488e4c18e59c329fa425f 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_2071 6561f50a923488e4c18e59c329fa425f 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 8.3E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_2071 6561f50a923488e4c18e59c329fa425f 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 8.3E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_2071 6561f50a923488e4c18e59c329fa425f 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 8.3E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_2071 6561f50a923488e4c18e59c329fa425f 212 SMART SM00448 12 123 1.7E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_3113 5c4afd404dff98ea35da9fd967fd3b11 239 SUPERFAMILY SSF53955 43 236 1.21E-59 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily ALFP_3113 5c4afd404dff98ea35da9fd967fd3b11 239 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 14 239 40.344 T 12-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_3113 5c4afd404dff98ea35da9fd967fd3b11 239 Pfam PF00912 Transglycosylase 62 233 5.1E-56 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_3113 5c4afd404dff98ea35da9fd967fd3b11 239 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 17 238 8.1E-90 T 12-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_3113 5c4afd404dff98ea35da9fd967fd3b11 239 Gene3D G3DSA:1.10.3810.10 49 238 6.6E-57 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_0274 d02d7ffadb3deb2988544b25c36dee64 226 Gene3D G3DSA:1.10.150.240 18 86 4.7E-61 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 ALFP_0274 d02d7ffadb3deb2988544b25c36dee64 226 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 3 217 35.467 T 12-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 ALFP_0274 d02d7ffadb3deb2988544b25c36dee64 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 187 2.4E-37 T 12-10-2018 ALFP_0274 d02d7ffadb3deb2988544b25c36dee64 226 SUPERFAMILY SSF56784 5 218 7.04E-61 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_0274 d02d7ffadb3deb2988544b25c36dee64 226 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 102 181 4.8E-13 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 ALFP_0274 d02d7ffadb3deb2988544b25c36dee64 226 Gene3D G3DSA:3.40.50.1000 6 193 4.7E-61 T 12-10-2018 IPR023214 HAD superfamily ALFP_0274 d02d7ffadb3deb2988544b25c36dee64 226 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 6 212 6.1E-65 T 12-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 ALFP_0274 d02d7ffadb3deb2988544b25c36dee64 226 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 65 187 3.3E-9 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 ALFP_2725 a2ad64dd60390033e6d1f16c7ee1e17f 224 Hamap MF_02088 Probable queuosine precursor transporter. 9 220 15.786 T 12-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 ALFP_2725 a2ad64dd60390033e6d1f16c7ee1e17f 224 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 17 206 1.4E-57 T 12-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 ALFP_2725 a2ad64dd60390033e6d1f16c7ee1e17f 224 Pfam PF02592 Putative vitamin uptake transporter 45 202 1.0E-38 T 12-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 ALFP_2895 ff5b45cea6a824f4d98174997f121b72 172 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 10 151 25.661 T 12-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 ALFP_2895 ff5b45cea6a824f4d98174997f121b72 172 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 14 147 3.0E-45 T 12-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 ALFP_2895 ff5b45cea6a824f4d98174997f121b72 172 Gene3D G3DSA:3.40.50.960 4 150 3.6E-48 T 12-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 ALFP_2895 ff5b45cea6a824f4d98174997f121b72 172 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 16 144 2.5E-36 T 12-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 ALFP_2895 ff5b45cea6a824f4d98174997f121b72 172 SUPERFAMILY SSF52121 7 151 5.1E-47 T 12-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 ALFP_0567 04ab23b8c0f80cc041ccfebd4db39339 300 SUPERFAMILY SSF46785 12 103 2.32E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0567 04ab23b8c0f80cc041ccfebd4db39339 300 Gene3D G3DSA:3.40.190.10 108 274 7.3E-44 T 12-10-2018 ALFP_0567 04ab23b8c0f80cc041ccfebd4db39339 300 Pfam PF03466 LysR substrate binding domain 105 276 4.3E-27 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0567 04ab23b8c0f80cc041ccfebd4db39339 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 18 77 6.4E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0567 04ab23b8c0f80cc041ccfebd4db39339 300 Gene3D G3DSA:1.10.10.10 12 98 1.5E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0567 04ab23b8c0f80cc041ccfebd4db39339 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 54 6.9E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0567 04ab23b8c0f80cc041ccfebd4db39339 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 54 65 6.9E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0567 04ab23b8c0f80cc041ccfebd4db39339 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 44 6.9E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0567 04ab23b8c0f80cc041ccfebd4db39339 300 SUPERFAMILY SSF53850 105 294 6.21E-26 T 12-10-2018 ALFP_0567 04ab23b8c0f80cc041ccfebd4db39339 300 Gene3D G3DSA:3.40.190.10 174 267 7.3E-44 T 12-10-2018 ALFP_1521 ad6f193aa72424adf940a58f00a34caa 320 Gene3D G3DSA:3.30.1330.60 187 320 2.3E-33 T 12-10-2018 IPR036737 OmpA-like domain superfamily ALFP_1521 ad6f193aa72424adf940a58f00a34caa 320 Pfam PF00691 OmpA family 217 313 1.5E-18 T 12-10-2018 IPR006665 OmpA-like domain ALFP_1521 ad6f193aa72424adf940a58f00a34caa 320 PRINTS PR01021 OMPA domain signature 263 279 5.7E-12 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 ALFP_1521 ad6f193aa72424adf940a58f00a34caa 320 PRINTS PR01021 OMPA domain signature 218 240 5.7E-12 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 ALFP_1521 ad6f193aa72424adf940a58f00a34caa 320 PRINTS PR01021 OMPA domain signature 248 263 5.7E-12 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 ALFP_1521 ad6f193aa72424adf940a58f00a34caa 320 Pfam PF16234 Domain of unknown function (DUF4892) 25 123 1.1E-12 T 12-10-2018 IPR032608 Protein of unknown function DUF4892 ALFP_1521 ad6f193aa72424adf940a58f00a34caa 320 SUPERFAMILY SSF103088 214 319 1.06E-30 T 12-10-2018 IPR036737 OmpA-like domain superfamily ALFP_1003 bb9b66a81d87ee319349efcf029d33dc 91 Pfam PF11720 Peptidase inhibitor I78 family 34 91 1.6E-12 T 12-10-2018 IPR021719 Proteinase inhibitor I78 ALFP_1003 bb9b66a81d87ee319349efcf029d33dc 91 Gene3D G3DSA:3.30.10.10 26 90 5.1E-17 T 12-10-2018 ALFP_0197 9bdac4c0d4fe3c46aab0b1ca105141b3 386 Gene3D G3DSA:3.40.47.10 8 384 5.5E-73 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_0197 9bdac4c0d4fe3c46aab0b1ca105141b3 386 PIRSF PIRSF000429 8 375 2.0E-17 T 12-10-2018 IPR002155 Thiolase GO:0016747 ALFP_0197 9bdac4c0d4fe3c46aab0b1ca105141b3 386 SUPERFAMILY SSF53901 25 370 2.13E-21 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2537 e99e4405fb9e65434e0fea3416f529de 202 Pfam PF01794 Ferric reductase like transmembrane component 49 161 3.9E-17 T 12-10-2018 IPR013130 Ferric reductase transmembrane component-like domain ALFP_2537 e99e4405fb9e65434e0fea3416f529de 202 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 5 195 19.38 T 12-10-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 ALFP_2913 be66b1b9f91fd9a0ee17a49e8c497106 274 Pfam PF00561 alpha/beta hydrolase fold 33 257 2.8E-17 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_2913 be66b1b9f91fd9a0ee17a49e8c497106 274 SUPERFAMILY SSF53474 8 270 3.41E-48 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2913 be66b1b9f91fd9a0ee17a49e8c497106 274 Gene3D G3DSA:3.40.50.1820 7 265 7.2E-66 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2742 63f8ed7cd991ae4b8308fe12cf0375a2 466 SUPERFAMILY SSF56954 4 459 3.14E-77 T 12-10-2018 ALFP_2742 63f8ed7cd991ae4b8308fe12cf0375a2 466 Gene3D G3DSA:2.20.200.10 96 347 1.9E-96 T 12-10-2018 ALFP_2742 63f8ed7cd991ae4b8308fe12cf0375a2 466 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 9 458 9.1E-75 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 ALFP_2742 63f8ed7cd991ae4b8308fe12cf0375a2 466 Pfam PF02321 Outer membrane efflux protein 276 456 7.7E-20 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_2742 63f8ed7cd991ae4b8308fe12cf0375a2 466 Pfam PF02321 Outer membrane efflux protein 59 249 1.3E-26 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_2742 63f8ed7cd991ae4b8308fe12cf0375a2 466 Gene3D G3DSA:1.20.1600.10 49 457 1.9E-96 T 12-10-2018 ALFP_1610 8260085c2b248cd63cab1d343a2b2717 420 Gene3D G3DSA:3.40.50.300 25 221 1.1E-15 T 12-10-2018 ALFP_1610 8260085c2b248cd63cab1d343a2b2717 420 SUPERFAMILY SSF52540 34 186 3.38E-12 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1610 8260085c2b248cd63cab1d343a2b2717 420 Pfam PF01926 50S ribosome-binding GTPase 41 137 3.1E-7 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_1230 3b2fd88a5eb4b7da4712f90789356403 111 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 40 56 8.4E-15 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 ALFP_1230 3b2fd88a5eb4b7da4712f90789356403 111 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 96 109 8.4E-15 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 ALFP_1230 3b2fd88a5eb4b7da4712f90789356403 111 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 75 91 8.4E-15 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 ALFP_1230 3b2fd88a5eb4b7da4712f90789356403 111 Pfam PF02049 Flagellar hook-basal body complex protein FliE 25 111 3.1E-28 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 ALFP_1230 3b2fd88a5eb4b7da4712f90789356403 111 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 7 111 18.024 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 ALFP_1230 3b2fd88a5eb4b7da4712f90789356403 111 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 6 109 2.3E-23 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 ALFP_0525 87c911e9de57c9653fd2b0b24eb904a6 126 SMART SM00363 4 62 2.1E-6 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_0525 87c911e9de57c9653fd2b0b24eb904a6 126 SUPERFAMILY SSF55174 2 101 7.89E-27 T 12-10-2018 ALFP_0525 87c911e9de57c9653fd2b0b24eb904a6 126 PIRSF PIRSF016821 1 126 1.1E-43 T 12-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 ALFP_0525 87c911e9de57c9653fd2b0b24eb904a6 126 Pfam PF01479 S4 domain 5 50 2.4E-10 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_0525 87c911e9de57c9653fd2b0b24eb904a6 126 Gene3D G3DSA:3.10.290.10 1 102 7.0E-35 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 ALFP_1275 7d9bf9d1e8e497b159bb55f457156e45 234 SUPERFAMILY SSF46785 20 83 4.62E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1275 7d9bf9d1e8e497b159bb55f457156e45 234 Gene3D G3DSA:3.30.450.40 168 231 1.4E-8 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_1275 7d9bf9d1e8e497b159bb55f457156e45 234 Gene3D G3DSA:3.30.450.40 88 166 1.6E-8 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_1275 7d9bf9d1e8e497b159bb55f457156e45 234 SUPERFAMILY SSF55781 92 230 2.5E-16 T 12-10-2018 ALFP_1275 7d9bf9d1e8e497b159bb55f457156e45 234 Pfam PF09339 IclR helix-turn-helix domain 22 72 3.7E-15 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_1275 7d9bf9d1e8e497b159bb55f457156e45 234 SMART SM00346 20 108 2.6E-13 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_1275 7d9bf9d1e8e497b159bb55f457156e45 234 Pfam PF01614 Bacterial transcriptional regulator 176 224 1.6E-5 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal ALFP_1275 7d9bf9d1e8e497b159bb55f457156e45 234 Gene3D G3DSA:1.10.10.10 6 77 2.3E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0629 19d66d4d5b549bf309e5d083bbdf4973 241 Pfam PF00892 EamA-like transporter family 90 225 2.2E-11 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_0629 19d66d4d5b549bf309e5d083bbdf4973 241 SUPERFAMILY SSF103481 145 230 9.68E-9 T 12-10-2018 ALFP_0833 73ffa5a74df27bb871b89e40435ba83c 195 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 59 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site ALFP_0833 73ffa5a74df27bb871b89e40435ba83c 195 Gene3D G3DSA:1.10.357.10 1 195 1.2E-72 T 12-10-2018 ALFP_0833 73ffa5a74df27bb871b89e40435ba83c 195 SUPERFAMILY SSF46689 2 86 4.41E-21 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0833 73ffa5a74df27bb871b89e40435ba83c 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 5.6E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_0833 73ffa5a74df27bb871b89e40435ba83c 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 5.6E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_0833 73ffa5a74df27bb871b89e40435ba83c 195 SUPERFAMILY SSF48498 84 192 6.47E-5 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily ALFP_0833 73ffa5a74df27bb871b89e40435ba83c 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 7.9E-16 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_2297 8ddac696cc1032993bd02612f61eb329 415 Pfam PF01435 Peptidase family M48 205 414 5.9E-42 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 ALFP_2297 8ddac696cc1032993bd02612f61eb329 415 Pfam PF16491 CAAX prenyl protease N-terminal, five membrane helices 24 201 1.6E-53 T 12-10-2018 IPR032456 CAAX prenyl protease 1, N-terminal KEGG: 00900+3.4.24.84 ALFP_2297 8ddac696cc1032993bd02612f61eb329 415 Gene3D G3DSA:3.30.2010.10 201 283 4.8E-32 T 12-10-2018 ALFP_3323 5a79106599736071a0db13c669b3186d 171 SUPERFAMILY SSF49329 21 171 4.06E-47 T 12-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 ALFP_3323 5a79106599736071a0db13c669b3186d 171 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 32 170 4.5E-31 T 12-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 ALFP_3323 5a79106599736071a0db13c669b3186d 171 Gene3D G3DSA:2.60.40.200 19 171 1.3E-51 T 12-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 ALFP_1010 26cabc9861f6cd79bd1daecba06b4aa6 712 PIRSF PIRSF002741 2 73 58.0 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 ALFP_1010 26cabc9861f6cd79bd1daecba06b4aa6 712 PIRSF PIRSF002741 147 663 1.4E-45 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 ALFP_1010 26cabc9861f6cd79bd1daecba06b4aa6 712 SUPERFAMILY SSF53850 16 649 8.32E-79 T 12-10-2018 ALFP_1010 26cabc9861f6cd79bd1daecba06b4aa6 712 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 151 577 3.2E-50 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain ALFP_1010 26cabc9861f6cd79bd1daecba06b4aa6 712 Gene3D G3DSA:3.10.105.10 389 630 1.8E-44 T 12-10-2018 ALFP_1981 4558ee0634ad4e438e4d20db02f2e0b9 281 Gene3D G3DSA:3.30.70.1070 199 281 3.6E-11 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 ALFP_1981 4558ee0634ad4e438e4d20db02f2e0b9 281 Pfam PF05036 Sporulation related domain 204 278 1.7E-18 T 12-10-2018 IPR007730 Sporulation-like domain GO:0042834 ALFP_1981 4558ee0634ad4e438e4d20db02f2e0b9 281 SUPERFAMILY SSF110997 204 278 2.22E-15 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 ALFP_0569 111e6f4aea0528087867920ce24084cb 666 Pfam PF01588 Putative tRNA binding domain 566 655 2.9E-22 T 12-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 ALFP_0569 111e6f4aea0528087867920ce24084cb 666 Gene3D G3DSA:2.40.50.140 550 666 4.2E-31 T 12-10-2018 ALFP_0569 111e6f4aea0528087867920ce24084cb 666 Pfam PF09334 tRNA synthetases class I (M) 2 384 3.1E-125 T 12-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_0569 111e6f4aea0528087867920ce24084cb 666 SUPERFAMILY SSF47323 374 574 1.42E-24 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 ALFP_0569 111e6f4aea0528087867920ce24084cb 666 Gene3D G3DSA:3.40.50.620 2 372 2.3E-123 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_0569 111e6f4aea0528087867920ce24084cb 666 PRINTS PR01041 Methionyl-tRNA synthetase signature 372 383 4.5E-19 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 ALFP_0569 111e6f4aea0528087867920ce24084cb 666 PRINTS PR01041 Methionyl-tRNA synthetase signature 278 293 4.5E-19 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 ALFP_0569 111e6f4aea0528087867920ce24084cb 666 PRINTS PR01041 Methionyl-tRNA synthetase signature 239 250 4.5E-19 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 ALFP_0569 111e6f4aea0528087867920ce24084cb 666 PRINTS PR01041 Methionyl-tRNA synthetase signature 64 75 4.5E-19 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 ALFP_0569 111e6f4aea0528087867920ce24084cb 666 PRINTS PR01041 Methionyl-tRNA synthetase signature 16 30 4.5E-19 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 ALFP_0569 111e6f4aea0528087867920ce24084cb 666 Gene3D G3DSA:2.20.28.20 116 150 2.3E-123 T 12-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 ALFP_0569 111e6f4aea0528087867920ce24084cb 666 SUPERFAMILY SSF57770 116 150 1.1E-11 T 12-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 ALFP_0569 111e6f4aea0528087867920ce24084cb 666 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 550 665 4.2E-38 T 12-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 ALFP_0569 111e6f4aea0528087867920ce24084cb 666 Gene3D G3DSA:1.10.730.10 377 516 4.4E-21 T 12-10-2018 ALFP_0569 111e6f4aea0528087867920ce24084cb 666 SUPERFAMILY SSF52374 2 372 1.69E-79 T 12-10-2018 ALFP_0569 111e6f4aea0528087867920ce24084cb 666 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 2 524 4.6E-139 T 12-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 ALFP_0569 111e6f4aea0528087867920ce24084cb 666 SUPERFAMILY SSF50249 560 665 4.65E-30 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_0201 498ffccf17d8e8c3f6f704d0bfbcf60d 222 SMART SM00345 17 73 9.5E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0201 498ffccf17d8e8c3f6f704d0bfbcf60d 222 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 66 9.1E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ALFP_0201 498ffccf17d8e8c3f6f704d0bfbcf60d 222 SUPERFAMILY SSF48008 80 207 1.2E-18 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_0201 498ffccf17d8e8c3f6f704d0bfbcf60d 222 Pfam PF07729 FCD domain 84 204 2.8E-18 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_0201 498ffccf17d8e8c3f6f704d0bfbcf60d 222 Gene3D G3DSA:1.20.120.530 78 212 4.1E-18 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal ALFP_0201 498ffccf17d8e8c3f6f704d0bfbcf60d 222 SMART SM00895 84 208 3.8E-10 T 12-10-2018 IPR011711 GntR, C-terminal ALFP_0201 498ffccf17d8e8c3f6f704d0bfbcf60d 222 SUPERFAMILY SSF46785 10 78 1.82E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0201 498ffccf17d8e8c3f6f704d0bfbcf60d 222 Gene3D G3DSA:1.10.10.10 10 74 3.0E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3365 469ce06c6ec55b8a4224291bd9f6a6a2 276 Pfam PF12679 ABC-2 family transporter protein 5 274 5.9E-51 T 12-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 ALFP_3007 3fdd8afe0606ecfffc704f2e5c5e999f 250 Gene3D G3DSA:3.90.226.10 6 250 1.1E-62 T 12-10-2018 ALFP_3007 3fdd8afe0606ecfffc704f2e5c5e999f 250 SUPERFAMILY SSF52096 10 247 1.23E-41 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_3007 3fdd8afe0606ecfffc704f2e5c5e999f 250 Pfam PF00378 Enoyl-CoA hydratase/isomerase 19 214 9.5E-23 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 ALFP_0840 484822e78ec57b56bfc9b07d1d31c2ed 459 Pfam PF01743 Poly A polymerase head domain 58 182 3.8E-36 T 12-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 ALFP_0840 484822e78ec57b56bfc9b07d1d31c2ed 459 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 22 447 34.879 T 12-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 ALFP_0840 484822e78ec57b56bfc9b07d1d31c2ed 459 Gene3D G3DSA:3.30.460.10 26 178 4.1E-58 T 12-10-2018 ALFP_0840 484822e78ec57b56bfc9b07d1d31c2ed 459 Gene3D G3DSA:1.10.3090.10 181 424 2.1E-76 T 12-10-2018 ALFP_0840 484822e78ec57b56bfc9b07d1d31c2ed 459 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 211 269 1.2E-14 T 12-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 ALFP_0840 484822e78ec57b56bfc9b07d1d31c2ed 459 SUPERFAMILY SSF81891 181 411 4.05E-42 T 12-10-2018 ALFP_0840 484822e78ec57b56bfc9b07d1d31c2ed 459 SUPERFAMILY SSF81301 32 179 1.31E-40 T 12-10-2018 ALFP_0840 484822e78ec57b56bfc9b07d1d31c2ed 459 Pfam PF12626 Polymerase A arginine-rich C-terminus 322 445 3.9E-33 T 12-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain ALFP_0840 484822e78ec57b56bfc9b07d1d31c2ed 459 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 28 449 5.6E-149 T 12-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 ALFP_3321 e161f5a7784d950afcd75b99654fd335 336 Pfam PF00795 Carbon-nitrogen hydrolase 2 274 9.7E-38 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 ALFP_3321 e161f5a7784d950afcd75b99654fd335 336 SUPERFAMILY SSF56317 2 298 7.46E-55 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily ALFP_3321 e161f5a7784d950afcd75b99654fd335 336 Gene3D G3DSA:3.60.110.10 1 282 1.2E-82 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily ALFP_1916 3016f72a27b64cd50987866bfaea914a 146 TIGRFAM TIGR03646 YtoQ_fam: YtoQ family protein 3 144 3.7E-67 T 12-10-2018 IPR019884 YtoQ family protein ALFP_1916 3016f72a27b64cd50987866bfaea914a 146 Pfam PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ 6 143 8.9E-67 T 12-10-2018 IPR019884 YtoQ family protein ALFP_0236 47c39bf94ace7ea086bf4e8fcdc4919b 311 Pfam PF00892 EamA-like transporter family 163 297 2.2E-11 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_0236 47c39bf94ace7ea086bf4e8fcdc4919b 311 Pfam PF00892 EamA-like transporter family 24 154 3.6E-9 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_0236 47c39bf94ace7ea086bf4e8fcdc4919b 311 SUPERFAMILY SSF103481 204 303 1.05E-15 T 12-10-2018 ALFP_0236 47c39bf94ace7ea086bf4e8fcdc4919b 311 SUPERFAMILY SSF103481 63 157 4.05E-12 T 12-10-2018 ALFP_2317 6447f50f6cbb82c0a8ade92011a0f730 119 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 2 91 3.1E-37 T 12-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 ALFP_2317 6447f50f6cbb82c0a8ade92011a0f730 119 Gene3D G3DSA:4.10.520.10 1 93 1.2E-29 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 ALFP_2317 6447f50f6cbb82c0a8ade92011a0f730 119 SUPERFAMILY SSF47729 1 91 4.56E-28 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 ALFP_2317 6447f50f6cbb82c0a8ade92011a0f730 119 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.9E-26 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 ALFP_2317 6447f50f6cbb82c0a8ade92011a0f730 119 SMART SM00411 1 91 2.9E-36 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 ALFP_2317 6447f50f6cbb82c0a8ade92011a0f730 119 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 8.4E-17 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 ALFP_2317 6447f50f6cbb82c0a8ade92011a0f730 119 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 8.4E-17 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 ALFP_2317 6447f50f6cbb82c0a8ade92011a0f730 119 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 8.4E-17 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 364 542 2.2E-67 T 12-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 Gene3D G3DSA:2.70.98.90 76 344 8.8E-82 T 12-10-2018 IPR038221 YidC, periplasmic domain superfamily ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 Pfam PF02096 60Kd inner membrane protein 365 542 7.6E-58 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 Pfam PF14849 YidC periplasmic domain 81 354 2.5E-80 T 12-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 545 24.143 T 12-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 PRINTS PR01900 YidC translocation/secretion protein signature 498 522 4.2E-21 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 PRINTS PR01900 YidC translocation/secretion protein signature 350 366 4.2E-21 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 PRINTS PR01900 YidC translocation/secretion protein signature 479 494 4.2E-21 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 363 3.2E-110 T 12-10-2018 IPR028053 Membrane insertase YidC, N-terminal ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 PRINTS PR00701 60kDa inner membrane protein signature 509 532 4.8E-68 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 PRINTS PR00701 60kDa inner membrane protein signature 335 355 4.8E-68 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 PRINTS PR00701 60kDa inner membrane protein signature 2 23 4.8E-68 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 PRINTS PR00701 60kDa inner membrane protein signature 262 277 4.8E-68 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 PRINTS PR00701 60kDa inner membrane protein signature 473 495 4.8E-68 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 PRINTS PR00701 60kDa inner membrane protein signature 173 193 4.8E-68 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 PRINTS PR00701 60kDa inner membrane protein signature 426 449 4.8E-68 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 PRINTS PR00701 60kDa inner membrane protein signature 86 107 4.8E-68 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 ALFP_3729 c73f87fd31be8b8c528def037f93ed15 555 PRINTS PR00701 60kDa inner membrane protein signature 227 245 4.8E-68 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 ALFP_2092 a4d4662355e0da0dacc8ea623130efb5 231 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 26 229 1.6E-49 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 ALFP_2092 a4d4662355e0da0dacc8ea623130efb5 231 SUPERFAMILY SSF56529 21 231 7.33E-69 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 ALFP_2092 a4d4662355e0da0dacc8ea623130efb5 231 Gene3D G3DSA:3.90.850.10 1 231 1.0E-80 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 ALFP_0012 673d05ef9fb329a935ce29f4fd7e3978 408 Pfam PF13609 Gram-negative porin 27 388 4.3E-48 T 12-10-2018 ALFP_0012 673d05ef9fb329a935ce29f4fd7e3978 408 SUPERFAMILY SSF56935 39 408 1.78E-59 T 12-10-2018 ALFP_0012 673d05ef9fb329a935ce29f4fd7e3978 408 Gene3D G3DSA:2.40.160.10 28 408 1.1E-72 T 12-10-2018 IPR023614 Porin domain superfamily ALFP_0012 673d05ef9fb329a935ce29f4fd7e3978 408 PRINTS PR00184 Neisseria sp. porin signature 83 108 1.0E-10 T 12-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 ALFP_0012 673d05ef9fb329a935ce29f4fd7e3978 408 PRINTS PR00184 Neisseria sp. porin signature 183 200 1.0E-10 T 12-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 ALFP_0012 673d05ef9fb329a935ce29f4fd7e3978 408 PRINTS PR00184 Neisseria sp. porin signature 362 386 1.0E-10 T 12-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 ALFP_0012 673d05ef9fb329a935ce29f4fd7e3978 408 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 125 135 1.2E-7 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 ALFP_0012 673d05ef9fb329a935ce29f4fd7e3978 408 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 184 195 1.2E-7 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 ALFP_0012 673d05ef9fb329a935ce29f4fd7e3978 408 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 225 237 1.2E-7 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 ALFP_0012 673d05ef9fb329a935ce29f4fd7e3978 408 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 81 92 1.2E-7 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 ALFP_0012 673d05ef9fb329a935ce29f4fd7e3978 408 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 365 382 1.2E-7 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 ALFP_2954 3bcb777db5ac0f28d6f6697f5dfb7525 274 SUPERFAMILY SSF53474 9 270 1.13E-46 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2954 3bcb777db5ac0f28d6f6697f5dfb7525 274 Pfam PF12697 Alpha/beta hydrolase family 35 261 1.4E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_2954 3bcb777db5ac0f28d6f6697f5dfb7525 274 Gene3D G3DSA:3.40.50.1820 6 265 4.6E-65 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0622 ecb24f73043d76c3a1d24ec61ff63047 198 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 6 190 1.8E-55 T 12-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 ALFP_0622 ecb24f73043d76c3a1d24ec61ff63047 198 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 18 31 - T 12-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 ALFP_0622 ecb24f73043d76c3a1d24ec61ff63047 198 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 112 122 - T 12-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 ALFP_0622 ecb24f73043d76c3a1d24ec61ff63047 198 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 5 186 33.516 T 12-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 ALFP_0622 ecb24f73043d76c3a1d24ec61ff63047 198 Pfam PF01195 Peptidyl-tRNA hydrolase 7 191 7.1E-54 T 12-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 ALFP_0622 ecb24f73043d76c3a1d24ec61ff63047 198 Gene3D G3DSA:3.40.50.1470 5 196 4.1E-66 T 12-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 ALFP_0622 ecb24f73043d76c3a1d24ec61ff63047 198 SUPERFAMILY SSF53178 5 192 1.57E-62 T 12-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 ALFP_3273 b45f2106fef1caa9ed01bbe4d0e260a7 307 SUPERFAMILY SSF53850 101 305 1.0E-36 T 12-10-2018 ALFP_3273 b45f2106fef1caa9ed01bbe4d0e260a7 307 SUPERFAMILY SSF46785 10 125 1.81E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3273 b45f2106fef1caa9ed01bbe4d0e260a7 307 Gene3D G3DSA:1.10.10.10 15 106 1.9E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3273 b45f2106fef1caa9ed01bbe4d0e260a7 307 Pfam PF03466 LysR substrate binding domain 100 305 4.8E-36 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_3273 b45f2106fef1caa9ed01bbe4d0e260a7 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 75 7.1E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3273 b45f2106fef1caa9ed01bbe4d0e260a7 307 Gene3D G3DSA:3.40.190.290 107 306 1.4E-37 T 12-10-2018 ALFP_0294 ec8cc516274507c4fd2e7481ce18eff2 252 Gene3D G3DSA:3.40.50.300 1 251 2.5E-56 T 12-10-2018 ALFP_0294 ec8cc516274507c4fd2e7481ce18eff2 252 SMART SM00382 29 222 2.3E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0294 ec8cc516274507c4fd2e7481ce18eff2 252 SUPERFAMILY SSF52540 4 244 3.76E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0294 ec8cc516274507c4fd2e7481ce18eff2 252 Pfam PF00005 ABC transporter 20 176 5.3E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1560 a74588fd081764de517a6405cc9af258 558 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 68 477 1.7E-57 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 ALFP_1560 a74588fd081764de517a6405cc9af258 558 Gene3D G3DSA:1.20.1730.10 56 552 2.0E-58 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily ALFP_1560 a74588fd081764de517a6405cc9af258 558 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 183 208 - T 12-10-2018 IPR018212 Sodium/solute symporter, conserved site ALFP_1560 a74588fd081764de517a6405cc9af258 558 Pfam PF00474 Sodium:solute symporter family 68 477 4.3E-101 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 ALFP_3235 f2afa3db432af4f6463f54a27a8a8437 263 SUPERFAMILY SSF52540 21 258 2.15E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3235 f2afa3db432af4f6463f54a27a8a8437 263 Pfam PF00005 ABC transporter 37 188 4.2E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3235 f2afa3db432af4f6463f54a27a8a8437 263 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3235 f2afa3db432af4f6463f54a27a8a8437 263 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 237 258 1.8E-4 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal ALFP_3235 f2afa3db432af4f6463f54a27a8a8437 263 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 21 263 4.7E-117 T 12-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 ALFP_3235 f2afa3db432af4f6463f54a27a8a8437 263 Gene3D G3DSA:3.40.50.300 20 263 2.9E-72 T 12-10-2018 ALFP_3235 f2afa3db432af4f6463f54a27a8a8437 263 SMART SM00382 45 261 2.3E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_1590 231d58cd2c583613c0e374487d710b2c 396 Gene3D G3DSA:1.20.1250.20 206 393 1.6E-16 T 12-10-2018 ALFP_1590 231d58cd2c583613c0e374487d710b2c 396 Gene3D G3DSA:1.20.1250.20 4 196 9.1E-24 T 12-10-2018 ALFP_1590 231d58cd2c583613c0e374487d710b2c 396 Pfam PF07690 Major Facilitator Superfamily 26 324 1.1E-28 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_1590 231d58cd2c583613c0e374487d710b2c 396 SUPERFAMILY SSF103473 7 388 1.18E-50 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_3467 bce7764ca38eaa11039609c4b176354e 346 Gene3D G3DSA:3.40.190.170 30 345 1.9E-109 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_3467 bce7764ca38eaa11039609c4b176354e 346 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 39 312 2.3E-36 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_1324 66b85e45a117080e94eb7bb93793e0de 583 Pfam PF04632 Fusaric acid resistance protein family 215 544 1.7E-26 T 12-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 ALFP_1944 f1c6c0e76e48db294ce36654c8add6d3 269 Gene3D G3DSA:3.40.50.300 1 118 4.8E-9 T 12-10-2018 ALFP_1944 f1c6c0e76e48db294ce36654c8add6d3 269 Gene3D G3DSA:3.40.50.300 177 258 6.8E-19 T 12-10-2018 ALFP_1944 f1c6c0e76e48db294ce36654c8add6d3 269 SUPERFAMILY SSF52540 4 258 7.43E-5 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0206 29145e993c6252c3591edb60b7e6627b 123 Gene3D G3DSA:1.10.260.40 54 122 9.1E-7 T 12-10-2018 ALFP_0206 29145e993c6252c3591edb60b7e6627b 123 SUPERFAMILY SSF47413 59 121 8.26E-6 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_2453 b2c1e7304bfba566c9d2455514517b8a 256 Pfam PF06629 MltA-interacting protein MipA 32 256 2.2E-39 T 12-10-2018 IPR010583 MltA-interacting MipA ALFP_2453 b2c1e7304bfba566c9d2455514517b8a 256 SUPERFAMILY SSF56935 73 223 1.5E-5 T 12-10-2018 ALFP_0174 f69ca485b3b9d23c073327567b65301a 482 Pfam PF01926 50S ribosome-binding GTPase 8 153 3.1E-17 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 ALFP_0174 f69ca485b3b9d23c073327567b65301a 482 SUPERFAMILY SSF52540 6 171 2.68E-19 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0174 f69ca485b3b9d23c073327567b65301a 482 Pfam PF11981 Domain of unknown function (DUF3482) 166 462 5.1E-85 T 12-10-2018 IPR021871 Protein of unknown function DUF3482 ALFP_0174 f69ca485b3b9d23c073327567b65301a 482 Gene3D G3DSA:3.40.50.300 3 192 8.5E-28 T 12-10-2018 ALFP_0842 0b5ef345ad210519403ec91f89e08e4c 232 Gene3D G3DSA:1.10.8.60 159 224 1.4E-23 T 12-10-2018 ALFP_0842 0b5ef345ad210519403ec91f89e08e4c 232 Gene3D G3DSA:3.40.50.300 26 155 1.6E-22 T 12-10-2018 ALFP_0842 0b5ef345ad210519403ec91f89e08e4c 232 Pfam PF00308 Bacterial dnaA protein 89 205 1.2E-9 T 12-10-2018 IPR013317 Chromosomal replication initiator protein DnaA ALFP_0842 0b5ef345ad210519403ec91f89e08e4c 232 SUPERFAMILY SSF52540 12 203 2.83E-21 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0842 0b5ef345ad210519403ec91f89e08e4c 232 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 4 224 3.3E-68 T 12-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 ALFP_3509 eddebd10f3abe2f07251ca0d358a1319 177 Pfam PF08281 Sigma-70, region 4 109 158 3.8E-8 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ALFP_3509 eddebd10f3abe2f07251ca0d358a1319 177 Gene3D G3DSA:1.10.1740.10 2 75 6.8E-10 T 12-10-2018 ALFP_3509 eddebd10f3abe2f07251ca0d358a1319 177 Gene3D G3DSA:1.10.10.10 91 159 4.1E-6 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3509 eddebd10f3abe2f07251ca0d358a1319 177 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 7 158 5.8E-17 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 ALFP_3509 eddebd10f3abe2f07251ca0d358a1319 177 SUPERFAMILY SSF88659 87 159 1.18E-10 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like ALFP_3509 eddebd10f3abe2f07251ca0d358a1319 177 Pfam PF04542 Sigma-70 region 2 10 77 5.5E-12 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_3509 eddebd10f3abe2f07251ca0d358a1319 177 SUPERFAMILY SSF88946 5 95 1.69E-15 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_1550 70ace7e9364e85b48f8bac1cee82b89d 157 ProSitePatterns PS00893 Nudix box signature. 45 66 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 ALFP_1550 70ace7e9364e85b48f8bac1cee82b89d 157 Gene3D G3DSA:3.90.79.10 6 145 8.9E-30 T 12-10-2018 ALFP_1550 70ace7e9364e85b48f8bac1cee82b89d 157 Pfam PF00293 NUDIX domain 19 134 1.0E-20 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 ALFP_1550 70ace7e9364e85b48f8bac1cee82b89d 157 PRINTS PR00502 NUDIX hydrolase family signature 54 69 7.8E-6 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 ALFP_1550 70ace7e9364e85b48f8bac1cee82b89d 157 PRINTS PR00502 NUDIX hydrolase family signature 40 54 7.8E-6 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 ALFP_1550 70ace7e9364e85b48f8bac1cee82b89d 157 SUPERFAMILY SSF55811 10 140 1.07E-30 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 ALFP_3694 65a92a4fe053e780b9788c59c046a74a 390 Gene3D G3DSA:3.40.640.10 41 284 2.1E-134 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_3694 65a92a4fe053e780b9788c59c046a74a 390 Pfam PF00155 Aminotransferase class I and II 27 387 6.4E-58 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_3694 65a92a4fe053e780b9788c59c046a74a 390 SUPERFAMILY SSF53383 3 390 4.08E-97 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_3694 65a92a4fe053e780b9788c59c046a74a 390 Gene3D G3DSA:3.90.1150.10 13 383 2.1E-134 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_0992 a9687612ada9bcec719f84510ade0cf1 349 SUPERFAMILY SSF50331 237 343 1.19E-11 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal ALFP_0992 a9687612ada9bcec719f84510ade0cf1 349 SUPERFAMILY SSF52540 4 240 3.96E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0992 a9687612ada9bcec719f84510ade0cf1 349 Pfam PF08402 TOBE domain 274 343 4.9E-12 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 ALFP_0992 a9687612ada9bcec719f84510ade0cf1 349 Gene3D G3DSA:3.40.50.300 1 238 1.7E-78 T 12-10-2018 ALFP_0992 a9687612ada9bcec719f84510ade0cf1 349 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0992 a9687612ada9bcec719f84510ade0cf1 349 Gene3D G3DSA:2.40.50.140 245 276 4.1E-5 T 12-10-2018 ALFP_0992 a9687612ada9bcec719f84510ade0cf1 349 SMART SM00382 28 211 2.4E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0992 a9687612ada9bcec719f84510ade0cf1 349 Pfam PF00005 ABC transporter 20 161 7.5E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0992 a9687612ada9bcec719f84510ade0cf1 349 Gene3D G3DSA:2.40.50.100 277 339 4.1E-5 T 12-10-2018 ALFP_2302 1f8e79c11eeffc05315f012ba6bc9fa0 255 Pfam PF03099 Biotin/lipoate A/B protein ligase family 59 169 6.5E-9 T 12-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 ALFP_2302 1f8e79c11eeffc05315f012ba6bc9fa0 255 Gene3D G3DSA:3.30.930.10 9 253 1.4E-61 T 12-10-2018 ALFP_2302 1f8e79c11eeffc05315f012ba6bc9fa0 255 SUPERFAMILY SSF55681 7 251 6.53E-67 T 12-10-2018 ALFP_0510 4b1b2aefadc67d3dbde304e63d71c71b 420 Gene3D G3DSA:3.40.190.10 145 410 5.0E-106 T 12-10-2018 ALFP_0510 4b1b2aefadc67d3dbde304e63d71c71b 420 SUPERFAMILY SSF53850 25 413 3.12E-81 T 12-10-2018 ALFP_0510 4b1b2aefadc67d3dbde304e63d71c71b 420 Pfam PF13416 Bacterial extracellular solute-binding protein 46 356 1.1E-47 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein ALFP_0510 4b1b2aefadc67d3dbde304e63d71c71b 420 Gene3D G3DSA:3.40.190.10 34 375 5.0E-106 T 12-10-2018 ALFP_1914 cf6036faa95aca758756c2908e8303d0 105 Pfam PF13663 Domain of unknown function (DUF4148) 1 75 2.2E-12 T 12-10-2018 IPR025421 Protein of unknown function DUF4148 ALFP_2139 88eb87c0925d795e33f2d55ff4d412d7 379 Pfam PF00512 His Kinase A (phospho-acceptor) domain 146 209 1.5E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_2139 88eb87c0925d795e33f2d55ff4d412d7 379 SUPERFAMILY SSF55874 200 362 1.24E-31 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_2139 88eb87c0925d795e33f2d55ff4d412d7 379 SUPERFAMILY SSF47384 128 210 1.57E-16 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_2139 88eb87c0925d795e33f2d55ff4d412d7 379 SMART SM00387 257 365 2.7E-28 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2139 88eb87c0925d795e33f2d55ff4d412d7 379 PRINTS PR00344 Bacterial sensor protein C-terminal signature 292 306 6.2E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2139 88eb87c0925d795e33f2d55ff4d412d7 379 PRINTS PR00344 Bacterial sensor protein C-terminal signature 324 342 6.2E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2139 88eb87c0925d795e33f2d55ff4d412d7 379 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 320 6.2E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_2139 88eb87c0925d795e33f2d55ff4d412d7 379 Gene3D G3DSA:1.10.287.130 96 211 2.4E-18 T 12-10-2018 ALFP_2139 88eb87c0925d795e33f2d55ff4d412d7 379 SMART SM00388 145 210 8.7E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_2139 88eb87c0925d795e33f2d55ff4d412d7 379 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 261 362 6.9E-17 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_2139 88eb87c0925d795e33f2d55ff4d412d7 379 Gene3D G3DSA:3.30.565.10 219 363 6.2E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_2049 b7ba9e936e22571bf8ffd344060f0383 314 SMART SM00382 36 217 1.1E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2049 b7ba9e936e22571bf8ffd344060f0383 314 Pfam PF00005 ABC transporter 27 169 3.7E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2049 b7ba9e936e22571bf8ffd344060f0383 314 Gene3D G3DSA:3.40.50.300 1 239 3.4E-60 T 12-10-2018 ALFP_2049 b7ba9e936e22571bf8ffd344060f0383 314 SUPERFAMILY SSF52540 10 231 4.22E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2049 b7ba9e936e22571bf8ffd344060f0383 314 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0903 dfde73c5b3f13679ef8289f3da15ebfd 347 PIRSF PIRSF002756 4 339 6.5E-110 T 12-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 ALFP_0903 dfde73c5b3f13679ef8289f3da15ebfd 347 SUPERFAMILY SSF53850 27 335 3.03E-94 T 12-10-2018 ALFP_0903 dfde73c5b3f13679ef8289f3da15ebfd 347 Pfam PF12849 PBP superfamily domain 19 306 2.9E-63 T 12-10-2018 IPR024370 PBP domain ALFP_0903 dfde73c5b3f13679ef8289f3da15ebfd 347 Gene3D G3DSA:3.40.190.10 27 325 1.4E-122 T 12-10-2018 ALFP_0903 dfde73c5b3f13679ef8289f3da15ebfd 347 Gene3D G3DSA:3.40.190.10 101 278 1.4E-122 T 12-10-2018 ALFP_0903 dfde73c5b3f13679ef8289f3da15ebfd 347 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 27 335 1.9E-123 T 12-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 ALFP_2465 68e2536ba455ceb7cf9e70c3e529564f 88 SUPERFAMILY SSF143800 1 78 6.67E-20 T 12-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2465 68e2536ba455ceb7cf9e70c3e529564f 88 PRINTS PR01249 Ribosomal protein L31 signature 44 59 1.0E-13 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_2465 68e2536ba455ceb7cf9e70c3e529564f 88 PRINTS PR01249 Ribosomal protein L31 signature 59 77 1.0E-13 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_2465 68e2536ba455ceb7cf9e70c3e529564f 88 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.0E-13 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_2465 68e2536ba455ceb7cf9e70c3e529564f 88 ProSitePatterns PS01143 Ribosomal protein L31 signature. 48 69 - T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_2465 68e2536ba455ceb7cf9e70c3e529564f 88 Gene3D G3DSA:2.30.170.50 1 83 1.2E-23 T 12-10-2018 ALFP_2465 68e2536ba455ceb7cf9e70c3e529564f 88 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 78 1.4E-18 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_2465 68e2536ba455ceb7cf9e70c3e529564f 88 Pfam PF01197 Ribosomal protein L31 1 78 2.5E-27 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_0060 881cf17ad155000f03f31358d97ba88a 233 SUPERFAMILY SSF52833 6 85 5.38E-17 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_0060 881cf17ad155000f03f31358d97ba88a 233 SUPERFAMILY SSF47616 86 202 1.11E-17 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily ALFP_0060 881cf17ad155000f03f31358d97ba88a 233 Pfam PF13410 Glutathione S-transferase, C-terminal domain 135 181 3.3E-6 T 12-10-2018 ALFP_0060 881cf17ad155000f03f31358d97ba88a 233 Gene3D G3DSA:1.20.1050.10 88 197 2.1E-52 T 12-10-2018 ALFP_0060 881cf17ad155000f03f31358d97ba88a 233 Pfam PF13417 Glutathione S-transferase, N-terminal domain 16 85 1.2E-12 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 ALFP_0060 881cf17ad155000f03f31358d97ba88a 233 Gene3D G3DSA:3.40.30.10 12 201 2.1E-52 T 12-10-2018 ALFP_2425 0383c988248132bcfb94e051707bab9b 335 Pfam PF13609 Gram-negative porin 4 314 1.6E-46 T 12-10-2018 ALFP_2425 0383c988248132bcfb94e051707bab9b 335 SUPERFAMILY SSF56935 13 335 3.36E-58 T 12-10-2018 ALFP_2425 0383c988248132bcfb94e051707bab9b 335 Gene3D G3DSA:2.40.160.10 13 335 9.8E-69 T 12-10-2018 IPR023614 Porin domain superfamily ALFP_3685 0bcd89d8c7230519fde7a6bcb059454b 144 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 1.9E-64 T 12-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3685 0bcd89d8c7230519fde7a6bcb059454b 144 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 31.494 T 12-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 ALFP_3685 0bcd89d8c7230519fde7a6bcb059454b 144 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 1.7E-24 T 12-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 ALFP_3685 0bcd89d8c7230519fde7a6bcb059454b 144 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 12-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3685 0bcd89d8c7230519fde7a6bcb059454b 144 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 9.3E-29 T 12-10-2018 IPR020784 Ribosomal protein L11, N-terminal ALFP_3685 0bcd89d8c7230519fde7a6bcb059454b 144 Gene3D G3DSA:1.10.10.250 73 141 4.4E-27 T 12-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily ALFP_3685 0bcd89d8c7230519fde7a6bcb059454b 144 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 5.0E-16 T 12-10-2018 ALFP_3685 0bcd89d8c7230519fde7a6bcb059454b 144 SMART SM00649 9 141 2.1E-84 T 12-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 ALFP_3685 0bcd89d8c7230519fde7a6bcb059454b 144 SUPERFAMILY SSF54747 3 73 6.02E-30 T 12-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily ALFP_3685 0bcd89d8c7230519fde7a6bcb059454b 144 Gene3D G3DSA:3.30.1550.10 2 72 1.4E-34 T 12-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily ALFP_3685 0bcd89d8c7230519fde7a6bcb059454b 144 SUPERFAMILY SSF46906 68 141 1.19E-26 T 12-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily ALFP_0328 bc02163b7d8dcf7de36c58c27ee2be6d 256 SUPERFAMILY SSF56112 6 255 2.92E-52 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily ALFP_0328 bc02163b7d8dcf7de36c58c27ee2be6d 256 Gene3D G3DSA:3.90.1200.10 88 256 3.7E-61 T 12-10-2018 ALFP_0328 bc02163b7d8dcf7de36c58c27ee2be6d 256 PIRSF PIRSF000706 1 256 3.3E-91 T 12-10-2018 IPR024165 Aminoglycoside 3-phosphotransferase GO:0005524|GO:0016773|GO:0046677 ALFP_0328 bc02163b7d8dcf7de36c58c27ee2be6d 256 Pfam PF01636 Phosphotransferase enzyme family 28 247 9.5E-29 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase ALFP_0328 bc02163b7d8dcf7de36c58c27ee2be6d 256 Gene3D G3DSA:3.30.200.20 1 87 4.4E-29 T 12-10-2018 ALFP_2004 027f29def44acf0c9c2769167648c081 124 SUPERFAMILY SSF53901 2 123 1.15E-43 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2004 027f29def44acf0c9c2769167648c081 124 Pfam PF02803 Thiolase, C-terminal domain 1 123 1.5E-46 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 ALFP_2004 027f29def44acf0c9c2769167648c081 124 ProSitePatterns PS00737 Thiolases signature 2. 70 86 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 ALFP_2004 027f29def44acf0c9c2769167648c081 124 Gene3D G3DSA:3.40.47.10 1 123 1.1E-50 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_1762 2ee1c26c2e0c8ffa252e9ad2a9911aa3 229 Pfam PF00717 Peptidase S24-like 138 194 4.9E-14 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C ALFP_1762 2ee1c26c2e0c8ffa252e9ad2a9911aa3 229 SUPERFAMILY SSF51306 96 222 6.93E-23 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily ALFP_1762 2ee1c26c2e0c8ffa252e9ad2a9911aa3 229 Gene3D G3DSA:2.10.109.10 94 227 1.5E-39 T 12-10-2018 ALFP_2069 88bd9981fbee09d25ede2796febf4931 143 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 30 77 1.4E-12 T 12-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 ALFP_2069 88bd9981fbee09d25ede2796febf4931 143 Pfam PF02627 Carboxymuconolactone decarboxylase family 14 94 9.7E-18 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 ALFP_2069 88bd9981fbee09d25ede2796febf4931 143 SUPERFAMILY SSF69118 10 142 4.83E-41 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 ALFP_2069 88bd9981fbee09d25ede2796febf4931 143 Gene3D G3DSA:1.20.1290.10 3 143 4.1E-45 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 ALFP_2324 8ffd5fe66bf200cdabb508929dd946cb 894 SMART SM00434 11 507 3.6E-285 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 ALFP_2324 8ffd5fe66bf200cdabb508929dd946cb 894 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 705 750 2.7E-14 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 ALFP_2324 8ffd5fe66bf200cdabb508929dd946cb 894 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 806 852 2.2E-12 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 ALFP_2324 8ffd5fe66bf200cdabb508929dd946cb 894 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 550 596 1.0E-9 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 ALFP_2324 8ffd5fe66bf200cdabb508929dd946cb 894 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 657 700 3.9E-9 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 ALFP_2324 8ffd5fe66bf200cdabb508929dd946cb 894 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 600 645 8.6E-10 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 ALFP_2324 8ffd5fe66bf200cdabb508929dd946cb 894 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 756 802 9.3E-12 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 ALFP_2324 8ffd5fe66bf200cdabb508929dd946cb 894 SUPERFAMILY SSF101904 545 865 3.01E-111 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal ALFP_2324 8ffd5fe66bf200cdabb508929dd946cb 894 SUPERFAMILY SSF56719 30 523 1.05E-176 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 ALFP_2324 8ffd5fe66bf200cdabb508929dd946cb 894 Gene3D G3DSA:1.10.268.10 370 501 4.0E-221 T 12-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 ALFP_2324 8ffd5fe66bf200cdabb508929dd946cb 894 Gene3D G3DSA:3.90.199.10 33 524 4.0E-221 T 12-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 ALFP_2324 8ffd5fe66bf200cdabb508929dd946cb 894 Gene3D G3DSA:3.30.1360.40 236 333 4.0E-221 T 12-10-2018 ALFP_2324 8ffd5fe66bf200cdabb508929dd946cb 894 Gene3D G3DSA:2.120.10.90 543 853 7.2E-124 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal ALFP_2324 8ffd5fe66bf200cdabb508929dd946cb 894 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 10 852 0.0 T 12-10-2018 ALFP_2324 8ffd5fe66bf200cdabb508929dd946cb 894 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 506 1.3E-153 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 ALFP_2324 8ffd5fe66bf200cdabb508929dd946cb 894 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 2 854 24.103 T 12-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ALFP_2616 e79baeb6811e9309c6afccb33e4619c8 348 SUPERFAMILY SSF144052 150 337 9.29E-9 T 12-10-2018 ALFP_2111 5d602236b59554c45286ca67ecda2187 298 Pfam PF04381 Putative exonuclease, RdgC 1 296 2.2E-116 T 12-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 ALFP_2111 5d602236b59554c45286ca67ecda2187 298 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 1 298 36.364 T 12-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 ALFP_0942 5e7dadf1b986ac48b47e45652d5c7ded 396 SMART SM00558 91 224 3.3E-4 T 12-10-2018 IPR003347 JmjC domain ALFP_0942 5e7dadf1b986ac48b47e45652d5c7ded 396 SUPERFAMILY SSF51197 6 314 8.65E-66 T 12-10-2018 ALFP_0942 5e7dadf1b986ac48b47e45652d5c7ded 396 Pfam PF08007 Cupin superfamily protein 16 300 1.5E-82 T 12-10-2018 IPR003347 JmjC domain ALFP_0942 5e7dadf1b986ac48b47e45652d5c7ded 396 Gene3D G3DSA:2.60.120.650 1 209 4.6E-76 T 12-10-2018 ALFP_0942 5e7dadf1b986ac48b47e45652d5c7ded 396 Gene3D G3DSA:1.10.10.2510 235 394 7.5E-12 T 12-10-2018 ALFP_2321 7d4f55774e629873132361553375930e 294 Pfam PF02153 Prephenate dehydrogenase 22 278 3.7E-70 T 12-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 ALFP_2321 7d4f55774e629873132361553375930e 294 Gene3D G3DSA:1.10.3660.10 183 289 3.1E-33 T 12-10-2018 ALFP_2321 7d4f55774e629873132361553375930e 294 Gene3D G3DSA:3.40.50.720 9 182 3.1E-54 T 12-10-2018 ALFP_2321 7d4f55774e629873132361553375930e 294 SUPERFAMILY SSF48179 179 287 4.08E-31 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_2321 7d4f55774e629873132361553375930e 294 SUPERFAMILY SSF51735 10 176 1.57E-48 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2589 2ea7ebd45ac21496309ab20448b3df57 158 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 11 151 4.4E-75 T 12-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2589 2ea7ebd45ac21496309ab20448b3df57 158 SUPERFAMILY SSF56770 9 151 5.36E-65 T 12-10-2018 ALFP_2589 2ea7ebd45ac21496309ab20448b3df57 158 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 118 134 - T 12-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2589 2ea7ebd45ac21496309ab20448b3df57 158 Gene3D G3DSA:3.40.50.12280 2 158 1.2E-76 T 12-10-2018 ALFP_2589 2ea7ebd45ac21496309ab20448b3df57 158 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 1 151 41.062 T 12-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2589 2ea7ebd45ac21496309ab20448b3df57 158 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 37 145 7.0E-22 T 12-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_3125 d4970815ee778eb30c9ab1cd720a3235 39 Gene3D G3DSA:3.30.300.310 1 39 1.6E-9 T 12-10-2018 ALFP_3125 d4970815ee778eb30c9ab1cd720a3235 39 SUPERFAMILY SSF56801 1 39 8.37E-11 T 12-10-2018 ALFP_1145 ee9d898aed94517a4819d147a8e699b4 301 Gene3D G3DSA:3.40.50.2000 1 123 9.0E-10 T 12-10-2018 ALFP_1145 ee9d898aed94517a4819d147a8e699b4 301 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 64 282 3.9E-39 T 12-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 ALFP_1145 ee9d898aed94517a4819d147a8e699b4 301 Gene3D G3DSA:3.40.50.2000 149 301 2.1E-22 T 12-10-2018 ALFP_1145 ee9d898aed94517a4819d147a8e699b4 301 SUPERFAMILY SSF53756 1 295 3.3E-37 T 12-10-2018 ALFP_2392 bc219ec0c4ebfca04963f37ee4679b0e 548 Pfam PF03109 ABC1 family 116 232 8.7E-32 T 12-10-2018 IPR004147 UbiB domain ALFP_2392 bc219ec0c4ebfca04963f37ee4679b0e 548 SUPERFAMILY SSF56112 99 425 2.24E-28 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily ALFP_2956 964b216e42ba5b1c7a024f506c798c8a 181 PRINTS PR00598 Bacterial regulatory protein MarR family signature 80 96 3.6E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2956 964b216e42ba5b1c7a024f506c798c8a 181 PRINTS PR00598 Bacterial regulatory protein MarR family signature 146 166 3.6E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2956 964b216e42ba5b1c7a024f506c798c8a 181 PRINTS PR00598 Bacterial regulatory protein MarR family signature 116 132 3.6E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2956 964b216e42ba5b1c7a024f506c798c8a 181 PRINTS PR00598 Bacterial regulatory protein MarR family signature 97 112 3.6E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2956 964b216e42ba5b1c7a024f506c798c8a 181 SMART SM00347 56 156 2.4E-14 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2956 964b216e42ba5b1c7a024f506c798c8a 181 Gene3D G3DSA:1.10.10.10 28 176 4.2E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2956 964b216e42ba5b1c7a024f506c798c8a 181 Pfam PF01047 MarR family 63 120 2.2E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2956 964b216e42ba5b1c7a024f506c798c8a 181 SUPERFAMILY SSF46785 37 173 8.62E-27 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1349 c1e709a8223ef43d1cad373d040ee584 359 Gene3D G3DSA:3.40.640.10 13 267 2.3E-54 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_1349 c1e709a8223ef43d1cad373d040ee584 359 Pfam PF00266 Aminotransferase class-V 43 305 7.5E-19 T 12-10-2018 IPR000192 Aminotransferase class V domain ALFP_1349 c1e709a8223ef43d1cad373d040ee584 359 SUPERFAMILY SSF53383 9 356 3.59E-50 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_1349 c1e709a8223ef43d1cad373d040ee584 359 Gene3D G3DSA:3.90.1150.10 268 351 2.3E-54 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_2979 32d504876cf8b12af321a486039b6961 181 SMART SM00347 56 156 6.5E-14 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2979 32d504876cf8b12af321a486039b6961 181 Pfam PF01047 MarR family 63 120 8.4E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2979 32d504876cf8b12af321a486039b6961 181 ProSitePatterns PS01117 MarR-type HTH domain signature. 96 129 - T 12-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site ALFP_2979 32d504876cf8b12af321a486039b6961 181 PRINTS PR00598 Bacterial regulatory protein MarR family signature 146 166 1.5E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2979 32d504876cf8b12af321a486039b6961 181 PRINTS PR00598 Bacterial regulatory protein MarR family signature 80 96 1.5E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2979 32d504876cf8b12af321a486039b6961 181 PRINTS PR00598 Bacterial regulatory protein MarR family signature 116 132 1.5E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2979 32d504876cf8b12af321a486039b6961 181 PRINTS PR00598 Bacterial regulatory protein MarR family signature 97 112 1.5E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2979 32d504876cf8b12af321a486039b6961 181 SUPERFAMILY SSF46785 38 173 3.69E-26 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2979 32d504876cf8b12af321a486039b6961 181 Gene3D G3DSA:1.10.10.10 30 176 8.8E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0169 bae095ba8810ca5dfd50f4af7449b273 487 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 158 166 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site ALFP_0169 bae095ba8810ca5dfd50f4af7449b273 487 SUPERFAMILY SSF52540 79 365 1.06E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0169 bae095ba8810ca5dfd50f4af7449b273 487 Gene3D G3DSA:3.40.50.300 2 216 9.3E-79 T 12-10-2018 ALFP_0169 bae095ba8810ca5dfd50f4af7449b273 487 SMART SM00490 263 344 4.4E-31 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_0169 bae095ba8810ca5dfd50f4af7449b273 487 Gene3D G3DSA:3.40.50.300 218 405 2.4E-49 T 12-10-2018 ALFP_0169 bae095ba8810ca5dfd50f4af7449b273 487 Pfam PF00271 Helicase conserved C-terminal domain 240 344 2.6E-25 T 12-10-2018 IPR001650 Helicase, C-terminal ALFP_0169 bae095ba8810ca5dfd50f4af7449b273 487 Pfam PF00270 DEAD/DEAH box helicase 29 200 2.6E-48 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ALFP_0169 bae095ba8810ca5dfd50f4af7449b273 487 SMART SM00487 24 227 1.4E-63 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain ALFP_2423 5f4853ae4fdab4669ba9c59d94c073d4 336 SUPERFAMILY SSF53850 43 245 6.22E-26 T 12-10-2018 ALFP_2423 5f4853ae4fdab4669ba9c59d94c073d4 336 Gene3D G3DSA:3.40.190.10 116 215 9.5E-32 T 12-10-2018 ALFP_2423 5f4853ae4fdab4669ba9c59d94c073d4 336 Pfam PF09084 NMT1/THI5 like 46 249 9.3E-23 T 12-10-2018 IPR015168 SsuA/THI5-like ALFP_2423 5f4853ae4fdab4669ba9c59d94c073d4 336 Gene3D G3DSA:3.40.190.10 44 329 9.5E-32 T 12-10-2018 ALFP_2557 1907273b0b1f2715bbd9c0aea86fdd31 378 Pfam PF13458 Periplasmic binding protein 16 370 8.3E-49 T 12-10-2018 IPR028081 Leucine-binding protein domain ALFP_2557 1907273b0b1f2715bbd9c0aea86fdd31 378 SUPERFAMILY SSF53822 17 374 2.88E-70 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_2557 1907273b0b1f2715bbd9c0aea86fdd31 378 Gene3D G3DSA:3.40.50.2300 19 358 1.5E-113 T 12-10-2018 ALFP_2557 1907273b0b1f2715bbd9c0aea86fdd31 378 Gene3D G3DSA:3.40.50.2300 134 367 1.5E-113 T 12-10-2018 ALFP_0211 40e1b11084e64bfeef85bbd9a3ca7636 332 Gene3D G3DSA:3.40.190.10 128 266 3.7E-102 T 12-10-2018 ALFP_0211 40e1b11084e64bfeef85bbd9a3ca7636 332 Pfam PF16868 NMT1-like family 41 330 1.4E-93 T 12-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family ALFP_0211 40e1b11084e64bfeef85bbd9a3ca7636 332 SUPERFAMILY SSF53850 36 331 4.49E-82 T 12-10-2018 ALFP_0211 40e1b11084e64bfeef85bbd9a3ca7636 332 Gene3D G3DSA:3.40.190.10 41 330 3.7E-102 T 12-10-2018 ALFP_0211 40e1b11084e64bfeef85bbd9a3ca7636 332 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 11 330 3.6E-105 T 12-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family ALFP_2055 f8f5bf8ecfb602c94d7b12c77c2289e4 250 Pfam PF00117 Glutamine amidotransferase class-I 27 191 1.9E-19 T 12-10-2018 IPR017926 Glutamine amidotransferase ALFP_2055 f8f5bf8ecfb602c94d7b12c77c2289e4 250 SUPERFAMILY SSF52317 31 234 4.88E-38 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_2055 f8f5bf8ecfb602c94d7b12c77c2289e4 250 Gene3D G3DSA:3.40.50.880 16 237 2.3E-48 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_0351 c9d992be00761d186e737adc98b84135 209 TIGRFAM TIGR02661 MauD: methylamine dehydrogenase accessory protein MauD 3 187 7.4E-62 T 12-10-2018 IPR013478 Methylamine dehydrogenase accessory protein MauD GO:0030416 ALFP_0351 c9d992be00761d186e737adc98b84135 209 Gene3D G3DSA:3.40.30.10 44 180 2.9E-16 T 12-10-2018 ALFP_0351 c9d992be00761d186e737adc98b84135 209 SUPERFAMILY SSF52833 42 164 1.45E-16 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_0351 c9d992be00761d186e737adc98b84135 209 Pfam PF13098 Thioredoxin-like domain 73 171 3.1E-7 T 12-10-2018 IPR012336 Thioredoxin-like fold ALFP_2393 99e11ebabc0c3bf3362bef26a8e492ec 309 Pfam PF04228 Putative neutral zinc metallopeptidase 27 302 2.4E-112 T 12-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative ALFP_0815 31fa635b15fc8d2860ad7ccdf3b834f9 259 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 66 151 5.2E-18 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 ALFP_0815 31fa635b15fc8d2860ad7ccdf3b834f9 259 Gene3D G3DSA:1.10.3720.10 71 258 1.5E-43 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0815 31fa635b15fc8d2860ad7ccdf3b834f9 259 SUPERFAMILY SSF161098 80 242 1.44E-34 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0815 31fa635b15fc8d2860ad7ccdf3b834f9 259 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 257 2.8E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_1348 3d0d509277f24579321a9abfb1898c91 432 Gene3D G3DSA:1.20.1250.20 15 432 4.5E-69 T 12-10-2018 ALFP_1348 3d0d509277f24579321a9abfb1898c91 432 Pfam PF00083 Sugar (and other) transporter 22 222 9.2E-25 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ALFP_1348 3d0d509277f24579321a9abfb1898c91 432 Pfam PF00083 Sugar (and other) transporter 230 430 7.2E-18 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ALFP_1348 3d0d509277f24579321a9abfb1898c91 432 ProSitePatterns PS00217 Sugar transport proteins signature 2. 128 153 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ALFP_1348 3d0d509277f24579321a9abfb1898c91 432 SUPERFAMILY SSF103473 12 429 6.67E-67 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_1348 3d0d509277f24579321a9abfb1898c91 432 ProSitePatterns PS00216 Sugar transport proteins signature 1. 298 314 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ALFP_2294 cb1f5cd4d70ef230859cb7a6fc9c65af 332 TIGRFAM TIGR02156 PA_CoA_Oxy1: phenylacetate-CoA oxygenase, PaaG subunit 28 317 2.5E-164 T 12-10-2018 IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A GO:0010124|GO:0097266 KEGG: 00360+1.14.13.149 ALFP_2294 cb1f5cd4d70ef230859cb7a6fc9c65af 332 Pfam PF05138 Phenylacetic acid catabolic protein 38 313 1.4E-104 T 12-10-2018 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 ALFP_2294 cb1f5cd4d70ef230859cb7a6fc9c65af 332 SUPERFAMILY SSF47240 48 292 4.7E-84 T 12-10-2018 IPR009078 Ferritin-like superfamily ALFP_2294 cb1f5cd4d70ef230859cb7a6fc9c65af 332 Gene3D G3DSA:1.20.1260.10 21 332 3.8E-132 T 12-10-2018 IPR012347 Ferritin-like ALFP_3722 1ee2bf4c62421378cf14970190fc0a16 346 SUPERFAMILY SSF144052 19 336 8.24E-16 T 12-10-2018 ALFP_0639 719dc0669ed9216988f5c411c1db5cb7 243 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 120 140 3.7E-47 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0639 719dc0669ed9216988f5c411c1db5cb7 243 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 44 61 3.7E-47 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0639 719dc0669ed9216988f5c411c1db5cb7 243 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 61 81 3.7E-47 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0639 719dc0669ed9216988f5c411c1db5cb7 243 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 203 227 3.7E-47 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0639 719dc0669ed9216988f5c411c1db5cb7 243 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 99 119 3.7E-47 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0639 719dc0669ed9216988f5c411c1db5cb7 243 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 155 181 3.7E-47 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0639 719dc0669ed9216988f5c411c1db5cb7 243 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 44 227 6.7E-69 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0639 719dc0669ed9216988f5c411c1db5cb7 243 Pfam PF01578 Cytochrome C assembly protein 26 183 3.2E-29 T 12-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 ALFP_3453 7a7f9278c0f7283afd6dd312fef92a50 299 SUPERFAMILY SSF53474 28 278 2.47E-36 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_3453 7a7f9278c0f7283afd6dd312fef92a50 299 Gene3D G3DSA:3.40.50.1820 17 291 2.8E-42 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_3453 7a7f9278c0f7283afd6dd312fef92a50 299 Pfam PF12697 Alpha/beta hydrolase family 81 245 1.9E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_0335 6b3ae21e13b8015a2b1691de1cd30268 272 Gene3D G3DSA:1.10.3720.10 64 261 2.4E-22 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0335 6b3ae21e13b8015a2b1691de1cd30268 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 264 2.9E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0335 6b3ae21e13b8015a2b1691de1cd30268 272 SUPERFAMILY SSF161098 71 251 5.63E-27 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2812 2b0b7aba4a8655fbf320b6126a3aa16f 193 Pfam PF01330 RuvA N terminal domain 1 62 1.1E-21 T 12-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 ALFP_2812 2b0b7aba4a8655fbf320b6126a3aa16f 193 SUPERFAMILY SSF47781 65 132 2.8E-20 T 12-10-2018 IPR010994 RuvA domain 2-like ALFP_2812 2b0b7aba4a8655fbf320b6126a3aa16f 193 Gene3D G3DSA:1.10.8.10 145 190 6.6E-8 T 12-10-2018 ALFP_2812 2b0b7aba4a8655fbf320b6126a3aa16f 193 SUPERFAMILY SSF50249 1 63 1.37E-18 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2812 2b0b7aba4a8655fbf320b6126a3aa16f 193 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 190 3.7E-58 T 12-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 ALFP_2812 2b0b7aba4a8655fbf320b6126a3aa16f 193 SMART SM00278 73 92 23.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 ALFP_2812 2b0b7aba4a8655fbf320b6126a3aa16f 193 SMART SM00278 108 127 0.0028 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 ALFP_2812 2b0b7aba4a8655fbf320b6126a3aa16f 193 Pfam PF07499 RuvA, C-terminal domain 149 191 4.4E-13 T 12-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 ALFP_2812 2b0b7aba4a8655fbf320b6126a3aa16f 193 Gene3D G3DSA:1.10.150.20 67 137 3.8E-25 T 12-10-2018 ALFP_2812 2b0b7aba4a8655fbf320b6126a3aa16f 193 Pfam PF14520 Helix-hairpin-helix domain 72 129 4.3E-17 T 12-10-2018 ALFP_2812 2b0b7aba4a8655fbf320b6126a3aa16f 193 Gene3D G3DSA:2.40.50.140 1 66 1.6E-27 T 12-10-2018 ALFP_2812 2b0b7aba4a8655fbf320b6126a3aa16f 193 SUPERFAMILY SSF46929 147 192 2.62E-9 T 12-10-2018 IPR036267 RuvA, C-terminal domain superfamily ALFP_2812 2b0b7aba4a8655fbf320b6126a3aa16f 193 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 191 31.034 T 12-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 ALFP_0123 c7ffcdf09d663520548952d40aa0972f 341 Gene3D G3DSA:3.40.190.170 27 340 2.0E-123 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_0123 c7ffcdf09d663520548952d40aa0972f 341 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 34 321 2.4E-74 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_0123 c7ffcdf09d663520548952d40aa0972f 341 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 36 273 5.5E-62 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 ALFP_0123 c7ffcdf09d663520548952d40aa0972f 341 PIRSF PIRSF006470 1 338 1.6E-85 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 ALFP_2658 39cd85741a9a51b43d7432438c563b5a 299 Pfam PF01513 ATP-NAD kinase 57 272 5.2E-53 T 12-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 ALFP_2658 39cd85741a9a51b43d7432438c563b5a 299 Gene3D G3DSA:2.60.200.30 126 265 3.9E-87 T 12-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 ALFP_2658 39cd85741a9a51b43d7432438c563b5a 299 Hamap MF_00361 NAD kinase [nadK]. 4 288 32.265 T 12-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 ALFP_2658 39cd85741a9a51b43d7432438c563b5a 299 Gene3D G3DSA:3.40.50.10330 23 288 3.9E-87 T 12-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 ALFP_2658 39cd85741a9a51b43d7432438c563b5a 299 SUPERFAMILY SSF111331 5 290 4.71E-84 T 12-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily ALFP_1763 b8ac6b77f55cd09d6219671759fd4d3a 77 Gene3D G3DSA:1.10.260.40 15 59 4.0E-5 T 12-10-2018 ALFP_3082 edfbdeaa1ec8df51bcfaccaf4ff84df7 396 SMART SM00387 279 396 3.2E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_3082 edfbdeaa1ec8df51bcfaccaf4ff84df7 396 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 280 395 1.4E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_3082 edfbdeaa1ec8df51bcfaccaf4ff84df7 396 Gene3D G3DSA:1.10.287.130 173 234 3.5E-16 T 12-10-2018 ALFP_3082 edfbdeaa1ec8df51bcfaccaf4ff84df7 396 SMART SM00388 167 237 1.2E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ALFP_3082 edfbdeaa1ec8df51bcfaccaf4ff84df7 396 PRINTS PR00344 Bacterial sensor protein C-terminal signature 345 355 7.9E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3082 edfbdeaa1ec8df51bcfaccaf4ff84df7 396 PRINTS PR00344 Bacterial sensor protein C-terminal signature 356 374 7.9E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3082 edfbdeaa1ec8df51bcfaccaf4ff84df7 396 PRINTS PR00344 Bacterial sensor protein C-terminal signature 327 341 7.9E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3082 edfbdeaa1ec8df51bcfaccaf4ff84df7 396 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 393 7.9E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_3082 edfbdeaa1ec8df51bcfaccaf4ff84df7 396 SUPERFAMILY SSF55874 223 394 1.44E-33 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_3082 edfbdeaa1ec8df51bcfaccaf4ff84df7 396 SUPERFAMILY SSF47384 164 236 1.04E-6 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 ALFP_3082 edfbdeaa1ec8df51bcfaccaf4ff84df7 396 Gene3D G3DSA:3.30.565.10 239 396 2.2E-37 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_0971 f264bba6cb4721bc7f60dd30ffcaac3f 286 Pfam PF02673 Bacitracin resistance protein BacA 11 278 1.1E-78 T 12-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 ALFP_0971 f264bba6cb4721bc7f60dd30ffcaac3f 286 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 11 277 1.7E-66 T 12-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 ALFP_0971 f264bba6cb4721bc7f60dd30ffcaac3f 286 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 6 284 17.445 T 12-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 ALFP_0198 66c6ee6287a802a98f6b393d6232deb5 538 Pfam PF13193 AMP-binding enzyme C-terminal domain 436 511 1.0E-15 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain ALFP_0198 66c6ee6287a802a98f6b393d6232deb5 538 Gene3D G3DSA:3.30.300.30 423 521 1.2E-25 T 12-10-2018 ALFP_0198 66c6ee6287a802a98f6b393d6232deb5 538 ProSitePatterns PS00455 Putative AMP-binding domain signature. 184 195 - T 12-10-2018 IPR020845 AMP-binding, conserved site ALFP_0198 66c6ee6287a802a98f6b393d6232deb5 538 SUPERFAMILY SSF56801 13 523 8.24E-124 T 12-10-2018 ALFP_0198 66c6ee6287a802a98f6b393d6232deb5 538 Gene3D G3DSA:3.40.50.12780 25 422 5.0E-87 T 12-10-2018 ALFP_0198 66c6ee6287a802a98f6b393d6232deb5 538 Pfam PF00501 AMP-binding enzyme 30 427 4.7E-71 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_3662 a4af18dd7b53ef2cf5bf380a9a4358c5 260 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 27 103 3.3E-34 T 12-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3662 a4af18dd7b53ef2cf5bf380a9a4358c5 260 SUPERFAMILY SSF50104 112 257 3.19E-60 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily ALFP_3662 a4af18dd7b53ef2cf5bf380a9a4358c5 260 Gene3D G3DSA:2.30.30.30 103 181 3.1E-31 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 ALFP_3662 a4af18dd7b53ef2cf5bf380a9a4358c5 260 SMART SM01382 109 237 3.4E-86 T 12-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 ALFP_3662 a4af18dd7b53ef2cf5bf380a9a4358c5 260 Gene3D G3DSA:2.40.50.140 1 99 2.3E-42 T 12-10-2018 ALFP_3662 a4af18dd7b53ef2cf5bf380a9a4358c5 260 PIRSF PIRSF002158 2 260 6.0E-102 T 12-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3662 a4af18dd7b53ef2cf5bf380a9a4358c5 260 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 258 42.825 T 12-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 ALFP_3662 a4af18dd7b53ef2cf5bf380a9a4358c5 260 Gene3D G3DSA:4.10.950.10 182 259 4.1E-35 T 12-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3662 a4af18dd7b53ef2cf5bf380a9a4358c5 260 ProSitePatterns PS00467 Ribosomal protein L2 signature. 203 214 - T 12-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3662 a4af18dd7b53ef2cf5bf380a9a4358c5 260 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 4 258 3.9E-124 T 12-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 ALFP_3662 a4af18dd7b53ef2cf5bf380a9a4358c5 260 SMART SM01383 27 103 8.6E-45 T 12-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3662 a4af18dd7b53ef2cf5bf380a9a4358c5 260 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 111 235 4.1E-55 T 12-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 ALFP_3662 a4af18dd7b53ef2cf5bf380a9a4358c5 260 SUPERFAMILY SSF50249 2 109 5.14E-43 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_1524 161299985f9264dd40ae944181bf37a1 88 Gene3D G3DSA:3.10.450.50 1 88 7.5E-12 T 12-10-2018 ALFP_1524 161299985f9264dd40ae944181bf37a1 88 Pfam PF12680 SnoaL-like domain 3 79 2.1E-6 T 12-10-2018 IPR037401 SnoaL-like domain ALFP_1524 161299985f9264dd40ae944181bf37a1 88 SUPERFAMILY SSF54427 3 87 4.24E-13 T 12-10-2018 IPR032710 NTF2-like domain superfamily ALFP_3476 dd6570b7442ca93a389f35fcf59db399 301 SUPERFAMILY SSF53474 34 272 3.42E-43 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_3476 dd6570b7442ca93a389f35fcf59db399 301 Gene3D G3DSA:3.40.50.1820 34 286 8.8E-57 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_3476 dd6570b7442ca93a389f35fcf59db399 301 Pfam PF07859 alpha/beta hydrolase fold 78 200 2.1E-19 T 12-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 ALFP_3717 78ff7b19032c71e548a49fd9cc7a5bf5 291 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 276 4.4E-37 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_3129 4aeedb78236bdcaf3e1c17fc6a3edd3c 53 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 50 19.525 T 12-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 ALFP_3129 4aeedb78236bdcaf3e1c17fc6a3edd3c 53 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 6.0E-15 T 12-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 ALFP_3129 4aeedb78236bdcaf3e1c17fc6a3edd3c 53 PIRSF PIRSF036466 1 53 1.2E-20 T 12-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 ALFP_0398 ef1f9d278bbe80a141114e3d92577e95 345 Pfam PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase 111 326 5.0E-44 T 12-10-2018 IPR005079 Peptidase C45 ALFP_0398 ef1f9d278bbe80a141114e3d92577e95 345 Gene3D G3DSA:3.60.60.10 81 342 2.0E-42 T 12-10-2018 ALFP_2127 86b3f50a77ca5eb8e5c89029487a3052 113 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 107 8.1E-26 T 12-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like ALFP_0784 19dc36367b14537ce27cf33b99f83c52 604 Pfam PF00005 ABC transporter 302 435 6.8E-24 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0784 19dc36367b14537ce27cf33b99f83c52 604 SUPERFAMILY SSF52540 5 198 4.47E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0784 19dc36367b14537ce27cf33b99f83c52 604 Gene3D G3DSA:3.40.50.300 247 511 5.4E-65 T 12-10-2018 ALFP_0784 19dc36367b14537ce27cf33b99f83c52 604 Gene3D G3DSA:3.40.50.300 1 228 5.1E-59 T 12-10-2018 ALFP_0784 19dc36367b14537ce27cf33b99f83c52 604 ProSitePatterns PS00211 ABC transporters family signature. 123 137 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0784 19dc36367b14537ce27cf33b99f83c52 604 Pfam PF16326 ABC transporter C-terminal domain 534 599 1.1E-16 T 12-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 ALFP_0784 19dc36367b14537ce27cf33b99f83c52 604 Pfam PF12848 ABC transporter 190 265 2.7E-10 T 12-10-2018 IPR032781 ABC-transporter extension domain ALFP_0784 19dc36367b14537ce27cf33b99f83c52 604 Pfam PF00005 ABC transporter 21 151 3.8E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0784 19dc36367b14537ce27cf33b99f83c52 604 ProSitePatterns PS00211 ABC transporters family signature. 407 421 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0784 19dc36367b14537ce27cf33b99f83c52 604 Gene3D G3DSA:1.10.287.380 520 602 7.5E-17 T 12-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 ALFP_0784 19dc36367b14537ce27cf33b99f83c52 604 SMART SM00382 30 196 1.7E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0784 19dc36367b14537ce27cf33b99f83c52 604 SMART SM00382 310 480 4.1E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0784 19dc36367b14537ce27cf33b99f83c52 604 SUPERFAMILY SSF52540 279 496 8.26E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3577 164d749063893d522166a93f4741c2a6 486 Pfam PF00171 Aldehyde dehydrogenase family 17 482 1.0E-167 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_3577 164d749063893d522166a93f4741c2a6 486 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 252 259 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 ALFP_3577 164d749063893d522166a93f4741c2a6 486 SUPERFAMILY SSF53720 8 485 3.67E-158 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_3577 164d749063893d522166a93f4741c2a6 486 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 280 291 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 ALFP_3577 164d749063893d522166a93f4741c2a6 486 Gene3D G3DSA:3.40.309.10 257 449 2.8E-166 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_3577 164d749063893d522166a93f4741c2a6 486 Gene3D G3DSA:3.40.605.10 13 480 2.8E-166 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_3066 e13c98dbfe6805b062b71349ae5e0b60 416 PIRSF PIRSF000412 1 415 1.1E-164 T 12-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 ALFP_3066 e13c98dbfe6805b062b71349ae5e0b60 416 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 12-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 ALFP_3066 e13c98dbfe6805b062b71349ae5e0b60 416 Gene3D G3DSA:3.90.1150.10 10 392 3.2E-182 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_3066 e13c98dbfe6805b062b71349ae5e0b60 416 Pfam PF00464 Serine hydroxymethyltransferase 8 382 2.2E-169 T 12-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 ALFP_3066 e13c98dbfe6805b062b71349ae5e0b60 416 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 414 52.296 T 12-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 ALFP_3066 e13c98dbfe6805b062b71349ae5e0b60 416 SUPERFAMILY SSF53383 6 413 2.31E-178 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_3066 e13c98dbfe6805b062b71349ae5e0b60 416 Gene3D G3DSA:3.40.640.10 37 286 3.2E-182 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_3638 4bab139122f034b8982fdd23b7fab315 475 Gene3D G3DSA:3.40.605.10 9 470 1.1E-164 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 ALFP_3638 4bab139122f034b8982fdd23b7fab315 475 SUPERFAMILY SSF53720 2 473 3.01E-161 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_3638 4bab139122f034b8982fdd23b7fab315 475 Pfam PF00171 Aldehyde dehydrogenase family 15 472 3.1E-156 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 ALFP_3638 4bab139122f034b8982fdd23b7fab315 475 Gene3D G3DSA:3.40.309.10 253 442 1.1E-164 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 ALFP_0266 652c6ccf3875f2321c4422c25d158658 238 Gene3D G3DSA:3.20.20.70 6 234 2.0E-33 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0266 652c6ccf3875f2321c4422c25d158658 238 Pfam PF04055 Radical SAM superfamily 28 160 1.9E-14 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 ALFP_0266 652c6ccf3875f2321c4422c25d158658 238 Pfam PF13353 4Fe-4S single cluster domain 25 107 1.1E-8 T 12-10-2018 ALFP_0266 652c6ccf3875f2321c4422c25d158658 238 TIGRFAM TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein 10 197 2.1E-56 T 12-10-2018 IPR012840 Anaerobic ribonucleoside-triphosphate reductase activating protein ALFP_0266 652c6ccf3875f2321c4422c25d158658 238 SUPERFAMILY SSF102114 21 209 2.22E-21 T 12-10-2018 ALFP_2027 1c556f8250a2283aa1d25285c6e0add3 266 PIRSF PIRSF000097 98 254 1.0E-18 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_2027 1c556f8250a2283aa1d25285c6e0add3 266 PIRSF PIRSF000097 1 100 6.5E-17 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_2027 1c556f8250a2283aa1d25285c6e0add3 266 PRINTS PR00069 Aldo-keto reductase signature 79 97 5.0E-17 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_2027 1c556f8250a2283aa1d25285c6e0add3 266 PRINTS PR00069 Aldo-keto reductase signature 188 212 5.0E-17 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_2027 1c556f8250a2283aa1d25285c6e0add3 266 PRINTS PR00069 Aldo-keto reductase signature 23 47 5.0E-17 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_2027 1c556f8250a2283aa1d25285c6e0add3 266 PRINTS PR00069 Aldo-keto reductase signature 109 126 5.0E-17 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_2027 1c556f8250a2283aa1d25285c6e0add3 266 Pfam PF00248 Aldo/keto reductase family 3 252 3.2E-54 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain ALFP_2027 1c556f8250a2283aa1d25285c6e0add3 266 SUPERFAMILY SSF51430 2 255 2.23E-75 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily ALFP_2027 1c556f8250a2283aa1d25285c6e0add3 266 Gene3D G3DSA:3.20.20.100 1 263 5.2E-87 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily ALFP_1913 4814389d2b4fd7d34fa195ff011d534f 317 Gene3D G3DSA:1.10.10.10 9 95 6.6E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1913 4814389d2b4fd7d34fa195ff011d534f 317 Pfam PF03466 LysR substrate binding domain 94 298 2.8E-32 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1913 4814389d2b4fd7d34fa195ff011d534f 317 Gene3D G3DSA:3.40.190.290 97 297 4.7E-51 T 12-10-2018 ALFP_1913 4814389d2b4fd7d34fa195ff011d534f 317 SUPERFAMILY SSF46785 10 117 6.67E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1913 4814389d2b4fd7d34fa195ff011d534f 317 SUPERFAMILY SSF53850 96 302 6.15E-37 T 12-10-2018 ALFP_1913 4814389d2b4fd7d34fa195ff011d534f 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 3.1E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3126 c442b6bc2b6bd374abd55bb0f0778a0b 510 SUPERFAMILY SSF56801 19 478 6.15E-108 T 12-10-2018 ALFP_3126 c442b6bc2b6bd374abd55bb0f0778a0b 510 Pfam PF00501 AMP-binding enzyme 47 450 2.8E-81 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_3126 c442b6bc2b6bd374abd55bb0f0778a0b 510 Gene3D G3DSA:3.40.50.12780 32 443 4.8E-100 T 12-10-2018 ALFP_3126 c442b6bc2b6bd374abd55bb0f0778a0b 510 ProSitePatterns PS00455 Putative AMP-binding domain signature. 209 220 - T 12-10-2018 IPR020845 AMP-binding, conserved site ALFP_2526 994eb50e32252f712c408c334b2beb7c 410 SUPERFAMILY SSF53901 2 251 7.81E-84 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2526 994eb50e32252f712c408c334b2beb7c 410 SMART SM00825 Beta-ketoacyl synthase 5 410 4.2E-14 T 12-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain ALFP_2526 994eb50e32252f712c408c334b2beb7c 410 Gene3D G3DSA:3.40.47.10 256 398 7.8E-49 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2526 994eb50e32252f712c408c334b2beb7c 410 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 246 9.3E-64 T 12-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal ALFP_2526 994eb50e32252f712c408c334b2beb7c 410 PIRSF PIRSF000447 1 410 6.4E-182 T 12-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 ALFP_2526 994eb50e32252f712c408c334b2beb7c 410 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 366 6.5E-31 T 12-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal ALFP_2526 994eb50e32252f712c408c334b2beb7c 410 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 154 170 - T 12-10-2018 IPR018201 Beta-ketoacyl synthase, active site ALFP_2526 994eb50e32252f712c408c334b2beb7c 410 SUPERFAMILY SSF53901 213 408 3.55E-67 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2526 994eb50e32252f712c408c334b2beb7c 410 Gene3D G3DSA:3.40.47.10 1 255 1.1E-97 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2526 994eb50e32252f712c408c334b2beb7c 410 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 3 407 1.2E-195 T 12-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 ALFP_1466 cd9579c16b44a686febc1ebdf1259880 327 Gene3D G3DSA:1.20.1530.20 4 321 1.0E-24 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily ALFP_1466 cd9579c16b44a686febc1ebdf1259880 327 Pfam PF01758 Sodium Bile acid symporter family 49 225 1.3E-11 T 12-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 ALFP_3541 63d377471aba3f4574dc61ca26cbfa12 410 Gene3D G3DSA:2.30.40.10 13 399 3.2E-159 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_3541 63d377471aba3f4574dc61ca26cbfa12 410 SUPERFAMILY SSF51556 63 362 1.73E-85 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_3541 63d377471aba3f4574dc61ca26cbfa12 410 Pfam PF07969 Amidohydrolase family 112 378 5.7E-13 T 12-10-2018 IPR013108 Amidohydrolase 3 ALFP_3541 63d377471aba3f4574dc61ca26cbfa12 410 TIGRFAM TIGR01224 hutI: imidazolonepropionase 22 401 1.6E-141 T 12-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 ALFP_3541 63d377471aba3f4574dc61ca26cbfa12 410 SUPERFAMILY SSF51338 4 401 2.96E-22 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_3541 63d377471aba3f4574dc61ca26cbfa12 410 Hamap MF_00372 Imidazolonepropionase [hutI]. 4 402 41.765 T 12-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 ALFP_3541 63d377471aba3f4574dc61ca26cbfa12 410 Gene3D G3DSA:3.20.20.140 64 362 3.2E-159 T 12-10-2018 ALFP_1720 6f9b94b71da7d98d77a6ce8caf22f469 415 Gene3D G3DSA:3.90.1150.10 16 403 3.2E-171 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_1720 6f9b94b71da7d98d77a6ce8caf22f469 415 SUPERFAMILY SSF53383 15 409 3.58E-126 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_1720 6f9b94b71da7d98d77a6ce8caf22f469 415 Pfam PF00266 Aminotransferase class-V 33 401 3.0E-144 T 12-10-2018 IPR000192 Aminotransferase class V domain ALFP_1720 6f9b94b71da7d98d77a6ce8caf22f469 415 Gene3D G3DSA:3.40.640.10 43 303 3.2E-171 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_1720 6f9b94b71da7d98d77a6ce8caf22f469 415 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 15 413 2.2E-176 T 12-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 ALFP_1421 28c6f9cede015845d69aace7937c0d2f 204 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 26 184 3.0E-27 T 12-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component ALFP_1421 28c6f9cede015845d69aace7937c0d2f 204 SUPERFAMILY SSF159594 23 189 2.22E-21 T 12-10-2018 ALFP_1421 28c6f9cede015845d69aace7937c0d2f 204 Gene3D G3DSA:3.40.50.10610 15 174 4.7E-6 T 12-10-2018 ALFP_3486 8500690cfeda7809619259452ac1945f 274 SUPERFAMILY SSF56317 1 265 1.07E-78 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily ALFP_3486 8500690cfeda7809619259452ac1945f 274 Gene3D G3DSA:3.60.110.10 1 273 3.3E-91 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily ALFP_3486 8500690cfeda7809619259452ac1945f 274 Pfam PF00795 Carbon-nitrogen hydrolase 5 256 5.2E-54 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 ALFP_0331 db3a44b4f1391ea5a1249ac80518ea97 212 SUPERFAMILY SSF50475 3 190 2.7E-42 T 12-10-2018 ALFP_0331 db3a44b4f1391ea5a1249ac80518ea97 212 Pfam PF01613 Flavin reductase like domain 22 164 6.2E-18 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 ALFP_0331 db3a44b4f1391ea5a1249ac80518ea97 212 Gene3D G3DSA:2.30.110.10 2 206 5.6E-62 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 ALFP_0331 db3a44b4f1391ea5a1249ac80518ea97 212 SMART SM00903 22 175 3.4E-19 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 ALFP_2331 4a639d4b8389a6f079609b74e4ed1e17 357 Pfam PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family 27 313 5.1E-45 T 12-10-2018 IPR029132 Choloylglycine hydrolase/NAAA C-terminal ALFP_2331 4a639d4b8389a6f079609b74e4ed1e17 357 SUPERFAMILY SSF56235 27 330 1.31E-93 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal ALFP_2331 4a639d4b8389a6f079609b74e4ed1e17 357 Gene3D G3DSA:3.60.60.10 27 354 5.0E-123 T 12-10-2018 ALFP_1260 ccbf09a21acf6c7cd9c8cf9f8c6a156e 467 Pfam PF02447 GntP family permease 6 316 1.1E-8 T 12-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 ALFP_1023 982368de25868d45948dec977298c444 210 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 27 160 2.3E-22 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_1990 c8ef0df11aee117d42fa9d6ffbc1ca66 203 SUPERFAMILY SSF52833 47 202 9.44E-43 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_1990 c8ef0df11aee117d42fa9d6ffbc1ca66 203 Gene3D G3DSA:3.40.30.10 40 201 2.9E-44 T 12-10-2018 ALFP_1990 c8ef0df11aee117d42fa9d6ffbc1ca66 203 Pfam PF02630 SCO1/SenC 46 180 1.4E-33 T 12-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_1448 d2ea6702e1577d967b351fb162cf1d6a 502 SUPERFAMILY SSF103473 11 485 1.29E-34 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_1448 d2ea6702e1577d967b351fb162cf1d6a 502 Gene3D G3DSA:1.20.1250.20 5 197 1.3E-19 T 12-10-2018 ALFP_1448 d2ea6702e1577d967b351fb162cf1d6a 502 Pfam PF07690 Major Facilitator Superfamily 16 289 3.0E-18 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_2562 7d6ff4e7528939d0fb57da3b0ac06f3c 258 Gene3D G3DSA:3.10.50.40 120 256 1.1E-31 T 12-10-2018 ALFP_2562 7d6ff4e7528939d0fb57da3b0ac06f3c 258 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 157 178 - T 12-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 ALFP_2562 7d6ff4e7528939d0fb57da3b0ac06f3c 258 Gene3D G3DSA:1.10.8.1040 20 78 5.9E-6 T 12-10-2018 ALFP_2562 7d6ff4e7528939d0fb57da3b0ac06f3c 258 SUPERFAMILY SSF109998 20 156 2.04E-19 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily ALFP_2562 7d6ff4e7528939d0fb57da3b0ac06f3c 258 SUPERFAMILY SSF54534 119 219 1.11E-29 T 12-10-2018 ALFP_2562 7d6ff4e7528939d0fb57da3b0ac06f3c 258 Pfam PF00639 PPIC-type PPIASE domain 140 219 1.5E-22 T 12-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 ALFP_3332 2c265577df6e543b8ae270b756e725d0 440 Gene3D G3DSA:1.20.1250.20 23 439 1.1E-69 T 12-10-2018 ALFP_3332 2c265577df6e543b8ae270b756e725d0 440 Pfam PF07690 Major Facilitator Superfamily 253 434 2.7E-14 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_3332 2c265577df6e543b8ae270b756e725d0 440 SUPERFAMILY SSF103473 23 436 1.44E-66 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_3332 2c265577df6e543b8ae270b756e725d0 440 ProSitePatterns PS00217 Sugar transport proteins signature 2. 135 160 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ALFP_3332 2c265577df6e543b8ae270b756e725d0 440 Pfam PF00083 Sugar (and other) transporter 30 242 1.1E-24 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ALFP_3332 2c265577df6e543b8ae270b756e725d0 440 ProSitePatterns PS00216 Sugar transport proteins signature 1. 304 321 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ALFP_3254 7150177a358c25199460b2631a788b6e 115 Gene3D G3DSA:3.40.250.10 14 115 5.1E-26 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_3254 7150177a358c25199460b2631a788b6e 115 SMART SM00450 16 111 1.2E-19 T 12-10-2018 IPR001763 Rhodanese-like domain ALFP_3254 7150177a358c25199460b2631a788b6e 115 SUPERFAMILY SSF52821 12 114 8.64E-28 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_3254 7150177a358c25199460b2631a788b6e 115 Pfam PF00581 Rhodanese-like domain 19 106 1.2E-14 T 12-10-2018 IPR001763 Rhodanese-like domain ALFP_1166 736268679ad52e6ca51cedaad3bfee4d 126 Pfam PF04247 Invasion gene expression up-regulator, SirB 3 121 4.1E-39 T 12-10-2018 IPR007360 Invasion gene expression up-regulator, SirB ALFP_1166 736268679ad52e6ca51cedaad3bfee4d 126 PIRSF PIRSF005610 1 119 4.7E-26 T 12-10-2018 IPR007360 Invasion gene expression up-regulator, SirB ALFP_2501 6b538b69b603aa70cd84922fd7a7fac4 661 Pfam PF13193 AMP-binding enzyme C-terminal domain 545 626 8.1E-28 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain ALFP_2501 6b538b69b603aa70cd84922fd7a7fac4 661 ProSitePatterns PS00455 Putative AMP-binding domain signature. 270 281 - T 12-10-2018 IPR020845 AMP-binding, conserved site ALFP_2501 6b538b69b603aa70cd84922fd7a7fac4 661 Gene3D G3DSA:3.30.300.30 532 661 7.0E-27 T 12-10-2018 ALFP_2501 6b538b69b603aa70cd84922fd7a7fac4 661 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 31 659 7.1E-290 T 12-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 ALFP_2501 6b538b69b603aa70cd84922fd7a7fac4 661 Pfam PF00501 AMP-binding enzyme 99 536 3.1E-92 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_2501 6b538b69b603aa70cd84922fd7a7fac4 661 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 12 661 50.708 T 12-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 ALFP_2501 6b538b69b603aa70cd84922fd7a7fac4 661 SUPERFAMILY SSF56801 25 655 2.35E-170 T 12-10-2018 ALFP_2501 6b538b69b603aa70cd84922fd7a7fac4 661 Gene3D G3DSA:3.40.50.12780 59 529 2.7E-104 T 12-10-2018 ALFP_2501 6b538b69b603aa70cd84922fd7a7fac4 661 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 35 90 6.3E-20 T 12-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 ALFP_1621 05640a5abfb954db3fd74808fe461f5e 387 Pfam PF05940 NnrS protein 17 385 1.7E-83 T 12-10-2018 IPR010266 NnrS ALFP_0566 2fae740f3635373847b0ba9b0f5a18a7 282 Gene3D G3DSA:2.60.120.10 44 169 1.6E-108 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_0566 2fae740f3635373847b0ba9b0f5a18a7 282 Pfam PF07883 Cupin domain 199 258 1.4E-7 T 12-10-2018 IPR013096 Cupin 2, conserved barrel ALFP_0566 2fae740f3635373847b0ba9b0f5a18a7 282 Pfam PF07883 Cupin domain 76 145 3.6E-9 T 12-10-2018 IPR013096 Cupin 2, conserved barrel ALFP_0566 2fae740f3635373847b0ba9b0f5a18a7 282 TIGRFAM TIGR03214 ura-cupin: putative allantoin catabolism protein 10 276 2.6E-118 T 12-10-2018 IPR017627 Conserved hypothetical protein CHP03214, putative allantoin-urate catabolism protein KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 ALFP_0566 2fae740f3635373847b0ba9b0f5a18a7 282 Gene3D G3DSA:2.60.120.10 31 272 1.6E-108 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_0566 2fae740f3635373847b0ba9b0f5a18a7 282 SUPERFAMILY SSF51182 23 275 1.98E-78 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_1686 b5a6b21617b24c8903a1e163ad10e38a 153 Pfam PF01957 NfeD-like C-terminal, partner-binding 14 148 6.3E-21 T 12-10-2018 IPR002810 NfeD-like, C-terminal domain ALFP_1686 b5a6b21617b24c8903a1e163ad10e38a 153 Gene3D G3DSA:2.40.50.140 93 148 6.4E-10 T 12-10-2018 ALFP_1686 b5a6b21617b24c8903a1e163ad10e38a 153 SUPERFAMILY SSF141322 90 149 2.09E-5 T 12-10-2018 ALFP_2533 f64f691f08f3f2c32ec2b3597b5b6e3c 173 Pfam PF02620 Uncharacterized ACR, COG1399 59 171 1.0E-18 T 12-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD ALFP_2131 97da59af8ffd8376d198f2cc141e4a17 138 Pfam PF03334 Na+/H+ antiporter subunit 17 97 9.4E-19 T 12-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 ALFP_2131 97da59af8ffd8376d198f2cc141e4a17 138 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 17 104 9.1E-21 T 12-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 ALFP_0157 b8f5da5d0000a878fe7bcd61d94becf7 301 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 11 27 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 ALFP_0157 b8f5da5d0000a878fe7bcd61d94becf7 301 SUPERFAMILY SSF51569 2 291 1.36E-67 T 12-10-2018 ALFP_0157 b8f5da5d0000a878fe7bcd61d94becf7 301 Gene3D G3DSA:3.20.20.70 1 293 1.5E-103 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0157 b8f5da5d0000a878fe7bcd61d94becf7 301 Pfam PF00682 HMGL-like 4 273 8.2E-45 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 ALFP_3599 a7476af9c3c433332c2d67e977d4c462 44 Pfam PF13627 Prokaryotic lipoprotein-attachment site 9 31 2.8E-8 T 12-10-2018 IPR032831 Prokaryotic lipoprotein-attachment site ALFP_3040 fc9e5d51c389f5bf20d3879e58252cdc 131 Pfam PF17383 Uncharacterized KorC regulated protein A 8 69 8.5E-9 T 12-10-2018 IPR035338 Protein KleA/KleC ALFP_0399 3acfe700188438d1592b72e3bf5aa1ab 187 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 33 178 4.0E-38 T 12-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 ALFP_0399 3acfe700188438d1592b72e3bf5aa1ab 187 SUPERFAMILY SSF89028 8 178 2.16E-55 T 12-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 ALFP_0399 3acfe700188438d1592b72e3bf5aa1ab 187 Pfam PF01923 Cobalamin adenosyltransferase 8 165 9.5E-55 T 12-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 ALFP_0399 3acfe700188438d1592b72e3bf5aa1ab 187 Gene3D G3DSA:1.20.1200.10 17 183 2.6E-58 T 12-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 ALFP_0399 3acfe700188438d1592b72e3bf5aa1ab 187 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 10 178 6.7E-57 T 12-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 ALFP_1207 17e4758c0a2244ac4ede4c6904368d59 228 Hamap MF_00415 Flagellar L-ring protein [flgH]. 6 226 26.528 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 ALFP_1207 17e4758c0a2244ac4ede4c6904368d59 228 PRINTS PR01008 Flagellar L-ring protein signature 205 219 4.4E-27 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 ALFP_1207 17e4758c0a2244ac4ede4c6904368d59 228 PRINTS PR01008 Flagellar L-ring protein signature 189 203 4.4E-27 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 ALFP_1207 17e4758c0a2244ac4ede4c6904368d59 228 PRINTS PR01008 Flagellar L-ring protein signature 70 82 4.4E-27 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 ALFP_1207 17e4758c0a2244ac4ede4c6904368d59 228 PRINTS PR01008 Flagellar L-ring protein signature 142 157 4.4E-27 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 ALFP_1207 17e4758c0a2244ac4ede4c6904368d59 228 PRINTS PR01008 Flagellar L-ring protein signature 168 184 4.4E-27 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 ALFP_1207 17e4758c0a2244ac4ede4c6904368d59 228 Pfam PF02107 Flagellar L-ring protein 47 227 5.6E-59 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 ALFP_1596 45ac75cdf3418e225f23952baebdb892 182 Gene3D G3DSA:3.40.50.300 3 180 1.2E-25 T 12-10-2018 ALFP_1596 45ac75cdf3418e225f23952baebdb892 182 SUPERFAMILY SSF52540 13 174 1.82E-12 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1596 45ac75cdf3418e225f23952baebdb892 182 Pfam PF06414 Zeta toxin 8 169 8.8E-9 T 12-10-2018 IPR010488 Zeta toxin domain GO:0005524|GO:0016301 ALFP_3397 9f269e021a5ccbda831de20aa265247f 420 Pfam PF09850 Type VI secretion system protein DotU 34 235 4.0E-72 T 12-10-2018 IPR017732 Type IV / VI secretion system, DotU ALFP_3397 9f269e021a5ccbda831de20aa265247f 420 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 33 243 2.4E-74 T 12-10-2018 IPR017732 Type IV / VI secretion system, DotU ALFP_3397 9f269e021a5ccbda831de20aa265247f 420 Gene3D G3DSA:1.25.40.590 30 188 1.7E-58 T 12-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily ALFP_3397 9f269e021a5ccbda831de20aa265247f 420 Gene3D G3DSA:3.30.1330.60 268 415 9.3E-43 T 12-10-2018 IPR036737 OmpA-like domain superfamily ALFP_3397 9f269e021a5ccbda831de20aa265247f 420 TIGRFAM TIGR03350 type_VI_ompA: type VI secretion system peptidoglycan-associated domain 276 411 3.5E-50 T 12-10-2018 IPR017733 Type VI secretion system peptidoglycan-associated domain ALFP_3397 9f269e021a5ccbda831de20aa265247f 420 SUPERFAMILY SSF103088 297 414 3.92E-27 T 12-10-2018 IPR036737 OmpA-like domain superfamily ALFP_3397 9f269e021a5ccbda831de20aa265247f 420 Pfam PF00691 OmpA family 307 405 1.4E-14 T 12-10-2018 IPR006665 OmpA-like domain ALFP_3280 f73484f1ab29489d9ef4ebd6c39a4f9f 358 Pfam PF14897 EpsG family 24 321 3.9E-28 T 12-10-2018 ALFP_3550 e76adca1ead0ce69998a8a764bdf1eba 396 Pfam PF07690 Major Facilitator Superfamily 17 329 2.0E-38 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_3550 e76adca1ead0ce69998a8a764bdf1eba 396 Gene3D G3DSA:1.20.1250.20 10 383 3.0E-44 T 12-10-2018 ALFP_3550 e76adca1ead0ce69998a8a764bdf1eba 396 SUPERFAMILY SSF103473 10 387 5.89E-56 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_1526 b82afa10b23c9add174bcd8a14d13490 212 Gene3D G3DSA:1.10.10.60 12 79 5.3E-28 T 12-10-2018 ALFP_1526 b82afa10b23c9add174bcd8a14d13490 212 SUPERFAMILY SSF48498 92 207 1.37E-28 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily ALFP_1526 b82afa10b23c9add174bcd8a14d13490 212 Gene3D G3DSA:1.10.357.10 80 211 9.8E-36 T 12-10-2018 ALFP_1526 b82afa10b23c9add174bcd8a14d13490 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 72 6.3E-14 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1526 b82afa10b23c9add174bcd8a14d13490 212 SUPERFAMILY SSF46689 13 95 4.69E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0618 58836dc9398860049b546e685b954f83 198 Pfam PF03550 Outer membrane lipoprotein LolB 46 198 2.6E-31 T 12-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 ALFP_0618 58836dc9398860049b546e685b954f83 198 SUPERFAMILY SSF89392 23 198 2.04E-26 T 12-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX ALFP_0618 58836dc9398860049b546e685b954f83 198 Gene3D G3DSA:2.50.20.10 25 198 1.0E-26 T 12-10-2018 ALFP_3473 2d339cad10d7171d30affa50aa10dead 162 SMART SM00344 5 114 2.5E-39 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 ALFP_3473 2d339cad10d7171d30affa50aa10dead 162 SUPERFAMILY SSF46785 4 65 6.92E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3473 2d339cad10d7171d30affa50aa10dead 162 ProSitePatterns PS00519 AsnC-type HTH domain signature. 23 49 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site ALFP_3473 2d339cad10d7171d30affa50aa10dead 162 Gene3D G3DSA:1.10.10.10 1 58 3.6E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3473 2d339cad10d7171d30affa50aa10dead 162 Pfam PF13412 Winged helix-turn-helix DNA-binding 5 51 1.4E-18 T 12-10-2018 ALFP_3473 2d339cad10d7171d30affa50aa10dead 162 Gene3D G3DSA:3.30.70.920 59 141 7.7E-25 T 12-10-2018 ALFP_3473 2d339cad10d7171d30affa50aa10dead 162 Pfam PF01037 Lrp/AsnC ligand binding domain 71 144 2.2E-20 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain ALFP_3473 2d339cad10d7171d30affa50aa10dead 162 SUPERFAMILY SSF54909 65 153 2.14E-19 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel ALFP_3473 2d339cad10d7171d30affa50aa10dead 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 3.2E-17 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 ALFP_3473 2d339cad10d7171d30affa50aa10dead 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 3.2E-17 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 ALFP_3473 2d339cad10d7171d30affa50aa10dead 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 3.2E-17 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 ALFP_3401 b0e4a82f2539b3d75b98c38421de7bbd 196 SUPERFAMILY SSF49879 14 98 3.48E-5 T 12-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 ALFP_2330 0af213deb0f78f9f381f70b7aab84acb 110 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site ALFP_2330 0af213deb0f78f9f381f70b7aab84acb 110 Pfam PF00037 4Fe-4S binding domain 34 55 6.1E-7 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ALFP_2330 0af213deb0f78f9f381f70b7aab84acb 110 Gene3D G3DSA:3.30.70.20 2 103 9.8E-29 T 12-10-2018 ALFP_2330 0af213deb0f78f9f381f70b7aab84acb 110 SUPERFAMILY SSF54862 1 92 1.11E-21 T 12-10-2018 ALFP_2330 0af213deb0f78f9f381f70b7aab84acb 110 Pfam PF11953 Domain of unknown function (DUF3470) 67 108 5.6E-14 T 12-10-2018 IPR022569 Ferredoxin, C-terminal ALFP_2330 0af213deb0f78f9f381f70b7aab84acb 110 PRINTS PR00354 7Fe ferredoxin signature 19 29 2.1E-14 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 ALFP_2330 0af213deb0f78f9f381f70b7aab84acb 110 PRINTS PR00354 7Fe ferredoxin signature 9 19 2.1E-14 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 ALFP_2330 0af213deb0f78f9f381f70b7aab84acb 110 PRINTS PR00354 7Fe ferredoxin signature 35 52 2.1E-14 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 ALFP_0220 0e7c624f8215b9b5fc579061e9d48814 280 SUPERFAMILY SSF51419 52 275 1.83E-72 T 12-10-2018 IPR029066 PLP-binding barrel ALFP_0220 0e7c624f8215b9b5fc579061e9d48814 280 Gene3D G3DSA:3.20.20.10 41 280 8.4E-85 T 12-10-2018 IPR029066 PLP-binding barrel ALFP_0220 0e7c624f8215b9b5fc579061e9d48814 280 Pfam PF01168 Alanine racemase, N-terminal domain 58 277 2.3E-26 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 ALFP_0220 0e7c624f8215b9b5fc579061e9d48814 280 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 56 276 27.779 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 ALFP_0220 0e7c624f8215b9b5fc579061e9d48814 280 PIRSF PIRSF004848 47 280 1.8E-69 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 ALFP_0220 0e7c624f8215b9b5fc579061e9d48814 280 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 57 277 2.7E-53 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 ALFP_0827 5a1cd24c9352c882d2f22df173426264 179 PIRSF PIRSF004682 1 179 1.3E-54 T 12-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 ALFP_0827 5a1cd24c9352c882d2f22df173426264 179 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 4 145 2.3E-43 T 12-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 ALFP_0827 5a1cd24c9352c882d2f22df173426264 179 Gene3D G3DSA:3.40.50.1000 1 179 1.2E-54 T 12-10-2018 IPR023214 HAD superfamily ALFP_0827 5a1cd24c9352c882d2f22df173426264 179 Pfam PF13242 HAD-hyrolase-like 99 155 7.4E-11 T 12-10-2018 ALFP_0827 5a1cd24c9352c882d2f22df173426264 179 SUPERFAMILY SSF56784 2 158 2.67E-44 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_0827 5a1cd24c9352c882d2f22df173426264 179 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 2 146 4.0E-31 T 12-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 ALFP_2163 05ef938279e41d832b8993b1ae069a24 515 Pfam PF02239 Cytochrome D1 heme domain 156 501 7.1E-50 T 12-10-2018 ALFP_2163 05ef938279e41d832b8993b1ae069a24 515 SUPERFAMILY SSF46626 4 96 1.33E-16 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2163 05ef938279e41d832b8993b1ae069a24 515 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 26 91 3.1E-8 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2163 05ef938279e41d832b8993b1ae069a24 515 SUPERFAMILY SSF51004 103 504 2.35E-65 T 12-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily ALFP_2163 05ef938279e41d832b8993b1ae069a24 515 Gene3D G3DSA:1.10.760.10 5 97 2.3E-12 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2163 05ef938279e41d832b8993b1ae069a24 515 Gene3D G3DSA:2.140.10.20 101 504 3.0E-99 T 12-10-2018 IPR003143 Cytochrome cd1-nitrite reductase, C-terminal domain superfamily ALFP_3505 5a3bfb5d985a93e441ef93790a56f888 471 Pfam PF00593 TonB dependent receptor 27 469 4.6E-47 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_3505 5a3bfb5d985a93e441ef93790a56f888 471 Gene3D G3DSA:2.40.170.20 1 471 7.2E-121 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_3505 5a3bfb5d985a93e441ef93790a56f888 471 SUPERFAMILY SSF56935 15 471 3.66E-68 T 12-10-2018 ALFP_0426 c19917e80ba68fbb67f406ce915d5181 944 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 140 151 - T 12-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ALFP_0426 c19917e80ba68fbb67f406ce915d5181 944 Pfam PF00311 Phosphoenolpyruvate carboxylase 136 944 1.2E-274 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ALFP_0426 c19917e80ba68fbb67f406ce915d5181 944 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 577 597 1.8E-54 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ALFP_0426 c19917e80ba68fbb67f406ce915d5181 944 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 254 269 1.8E-54 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ALFP_0426 c19917e80ba68fbb67f406ce915d5181 944 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 139 152 1.8E-54 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ALFP_0426 c19917e80ba68fbb67f406ce915d5181 944 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 619 648 1.8E-54 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ALFP_0426 c19917e80ba68fbb67f406ce915d5181 944 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 405 425 1.8E-54 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ALFP_0426 c19917e80ba68fbb67f406ce915d5181 944 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 757 783 1.8E-54 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ALFP_0426 c19917e80ba68fbb67f406ce915d5181 944 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 191 207 1.8E-54 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ALFP_0426 c19917e80ba68fbb67f406ce915d5181 944 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 5 944 18.222 T 12-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ALFP_0426 c19917e80ba68fbb67f406ce915d5181 944 SUPERFAMILY SSF51621 13 944 7.85E-277 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 ALFP_0426 c19917e80ba68fbb67f406ce915d5181 944 Gene3D G3DSA:1.20.1440.90 282 408 5.3E-8 T 12-10-2018 ALFP_0426 c19917e80ba68fbb67f406ce915d5181 944 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 579 591 - T 12-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ALFP_0560 595da6cf99229c83f36cc52da6ee3d33 202 PIRSF PIRSF006386 1 201 3.0E-47 T 12-10-2018 IPR014440 HCCA isomerase/glutathione S-transferase kappa Reactome: R-HSA-156590|Reactome: R-HSA-9033241 ALFP_0560 595da6cf99229c83f36cc52da6ee3d33 202 Pfam PF01323 DSBA-like thioredoxin domain 7 195 1.5E-29 T 12-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 ALFP_0560 595da6cf99229c83f36cc52da6ee3d33 202 SUPERFAMILY SSF52833 6 196 5.97E-34 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_0560 595da6cf99229c83f36cc52da6ee3d33 202 Gene3D G3DSA:3.40.30.10 5 199 1.3E-50 T 12-10-2018 ALFP_2959 142267e5eed544be2fd90eab3b627ad4 359 Gene3D G3DSA:3.40.50.1980 194 295 8.9E-39 T 12-10-2018 ALFP_2959 142267e5eed544be2fd90eab3b627ad4 359 SUPERFAMILY SSF53807 53 354 9.81E-36 T 12-10-2018 ALFP_2959 142267e5eed544be2fd90eab3b627ad4 359 Pfam PF01497 Periplasmic binding protein 102 287 2.3E-15 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain ALFP_2959 142267e5eed544be2fd90eab3b627ad4 359 Gene3D G3DSA:3.40.50.1980 43 166 8.9E-21 T 12-10-2018 ALFP_2959 142267e5eed544be2fd90eab3b627ad4 359 Gene3D G3DSA:1.20.58.2180 171 340 8.9E-39 T 12-10-2018 ALFP_3708 0203132b2a63506d17add529ad9bba2f 291 Pfam PF02498 BRO family, N-terminal domain 20 107 1.3E-8 T 12-10-2018 IPR003497 BRO N-terminal domain ALFP_0101 8e112187a393a46782720ca205cdab53 305 Pfam PF00005 ABC transporter 5 163 3.7E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0101 8e112187a393a46782720ca205cdab53 305 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 215 279 3.5E-19 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ALFP_0101 8e112187a393a46782720ca205cdab53 305 SMART SM00382 14 213 2.6E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0101 8e112187a393a46782720ca205cdab53 305 Gene3D G3DSA:3.40.50.300 1 305 2.9E-96 T 12-10-2018 ALFP_0101 8e112187a393a46782720ca205cdab53 305 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 213 299 2.9E-25 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ALFP_0101 8e112187a393a46782720ca205cdab53 305 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0101 8e112187a393a46782720ca205cdab53 305 SUPERFAMILY SSF52540 14 294 1.1E-67 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2234 842162f78a7145668264f858ea7142a1 86 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 78 2.3E-26 T 12-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2234 842162f78a7145668264f858ea7142a1 86 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 21.835 T 12-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2234 842162f78a7145668264f858ea7142a1 86 Gene3D G3DSA:3.30.1320.10 1 85 1.8E-28 T 12-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2234 842162f78a7145668264f858ea7142a1 86 SUPERFAMILY SSF54565 1 78 1.44E-26 T 12-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_2234 842162f78a7145668264f858ea7142a1 86 Pfam PF00886 Ribosomal protein S16 8 68 3.2E-22 T 12-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1373 b9962bf959d957f6dd7f830c4be5833b 103 Pfam PF13031 Protein of unknown function (DUF3892) 24 99 5.0E-8 T 12-10-2018 IPR024997 Protein of unknown function DUF3892 ALFP_1501 4136a96279c3067807f12c7970caf47d 277 Gene3D G3DSA:3.20.20.140 1 273 5.1E-68 T 12-10-2018 ALFP_1501 4136a96279c3067807f12c7970caf47d 277 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 12-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 ALFP_1501 4136a96279c3067807f12c7970caf47d 277 Pfam PF01026 TatD related DNase 3 264 4.4E-58 T 12-10-2018 IPR001130 TatD family GO:0016788 ALFP_1501 4136a96279c3067807f12c7970caf47d 277 SUPERFAMILY SSF51556 2 265 4.72E-68 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_1501 4136a96279c3067807f12c7970caf47d 277 PIRSF PIRSF005902 1 268 1.5E-59 T 12-10-2018 IPR001130 TatD family GO:0016788 ALFP_1229 9605d0fb79cab84e7b641b6b1efc0a90 586 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 23 580 7.6E-130 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 ALFP_1229 9605d0fb79cab84e7b641b6b1efc0a90 586 Gene3D G3DSA:3.30.300.30 127 230 1.8E-11 T 12-10-2018 ALFP_1229 9605d0fb79cab84e7b641b6b1efc0a90 586 PIRSF PIRSF004862 9 582 6.8E-144 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 ALFP_1229 9605d0fb79cab84e7b641b6b1efc0a90 586 Pfam PF01514 Secretory protein of YscJ/FliF family 39 227 7.3E-75 T 12-10-2018 IPR006182 Secretory protein YscJ/FliF ALFP_1229 9605d0fb79cab84e7b641b6b1efc0a90 586 Pfam PF08345 Flagellar M-ring protein C-terminal 258 469 3.0E-44 T 12-10-2018 IPR013556 Flagellar M-ring C-terminal ALFP_1229 9605d0fb79cab84e7b641b6b1efc0a90 586 PRINTS PR01009 Flagellar M-ring protein signature 271 289 1.0E-29 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 ALFP_1229 9605d0fb79cab84e7b641b6b1efc0a90 586 PRINTS PR01009 Flagellar M-ring protein signature 203 221 1.0E-29 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 ALFP_1229 9605d0fb79cab84e7b641b6b1efc0a90 586 PRINTS PR01009 Flagellar M-ring protein signature 128 146 1.0E-29 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 ALFP_1229 9605d0fb79cab84e7b641b6b1efc0a90 586 PRINTS PR01009 Flagellar M-ring protein signature 160 174 1.0E-29 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 ALFP_1928 7cb6eea9c46a622beac2850780c0dcd3 509 SUPERFAMILY SSF52540 46 230 2.23E-12 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1928 7cb6eea9c46a622beac2850780c0dcd3 509 TIGRFAM TIGR03708 poly_P_AMP_trns: polyphosphate:AMP phosphotransferase 8 487 1.6E-177 T 12-10-2018 IPR022489 Polyphosphate:AMP phosphotransferase GO:0006797|GO:0043751 ALFP_1928 7cb6eea9c46a622beac2850780c0dcd3 509 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 15 236 7.3E-40 T 12-10-2018 IPR022488 Polyphosphate kinase-2-related ALFP_1928 7cb6eea9c46a622beac2850780c0dcd3 509 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 271 488 1.9E-82 T 12-10-2018 IPR022488 Polyphosphate kinase-2-related ALFP_1928 7cb6eea9c46a622beac2850780c0dcd3 509 Gene3D G3DSA:3.40.50.300 260 491 1.6E-94 T 12-10-2018 ALFP_1928 7cb6eea9c46a622beac2850780c0dcd3 509 Gene3D G3DSA:3.40.50.300 2 239 1.4E-61 T 12-10-2018 ALFP_1928 7cb6eea9c46a622beac2850780c0dcd3 509 SUPERFAMILY SSF52540 298 487 8.98E-24 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2358 968397224265e05c459db5808fb1b374 288 SUPERFAMILY SSF55073 5 170 8.16E-5 T 12-10-2018 IPR029787 Nucleotide cyclase ALFP_1935 30cb7039875ff7eaf2754c0cc5c8c0a8 187 Pfam PF04264 YceI-like domain 30 185 9.0E-30 T 12-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like ALFP_1935 30cb7039875ff7eaf2754c0cc5c8c0a8 187 Gene3D G3DSA:2.40.128.110 28 187 8.8E-38 T 12-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily ALFP_1935 30cb7039875ff7eaf2754c0cc5c8c0a8 187 SMART SM00867 27 187 2.7E-38 T 12-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like ALFP_1935 30cb7039875ff7eaf2754c0cc5c8c0a8 187 SUPERFAMILY SSF101874 30 186 3.53E-37 T 12-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily ALFP_1602 d593dbcac0c653355cd2c50d670a7a3e 290 Gene3D G3DSA:3.40.190.10 93 288 2.6E-61 T 12-10-2018 ALFP_1602 d593dbcac0c653355cd2c50d670a7a3e 290 SUPERFAMILY SSF53850 90 288 1.0E-28 T 12-10-2018 ALFP_1602 d593dbcac0c653355cd2c50d670a7a3e 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1602 d593dbcac0c653355cd2c50d670a7a3e 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1602 d593dbcac0c653355cd2c50d670a7a3e 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1602 d593dbcac0c653355cd2c50d670a7a3e 290 Gene3D G3DSA:3.40.190.10 163 266 2.6E-61 T 12-10-2018 ALFP_1602 d593dbcac0c653355cd2c50d670a7a3e 290 Gene3D G3DSA:1.10.10.10 1 92 4.4E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1602 d593dbcac0c653355cd2c50d670a7a3e 290 Pfam PF03466 LysR substrate binding domain 89 272 2.3E-33 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1602 d593dbcac0c653355cd2c50d670a7a3e 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.1E-23 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_1602 d593dbcac0c653355cd2c50d670a7a3e 290 SUPERFAMILY SSF46785 1 84 1.75E-26 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0664 b3803396a0f5ae8815a5595f4195d744 198 SUPERFAMILY SSF55729 26 188 1.61E-25 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_0664 b3803396a0f5ae8815a5595f4195d744 198 Pfam PF13420 Acetyltransferase (GNAT) domain 26 180 3.6E-21 T 12-10-2018 ALFP_0664 b3803396a0f5ae8815a5595f4195d744 198 Gene3D G3DSA:3.40.630.30 17 194 8.5E-48 T 12-10-2018 ALFP_0251 a21b514ab9539437219719982ebd1554 216 Pfam PF02230 Phospholipase/Carboxylesterase 109 180 2.3E-5 T 12-10-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 ALFP_0251 a21b514ab9539437219719982ebd1554 216 Gene3D G3DSA:3.40.50.1820 1 213 8.8E-45 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0251 a21b514ab9539437219719982ebd1554 216 SUPERFAMILY SSF53474 6 211 5.02E-35 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1128 7dbafa7363fdae677f19e867a6c5c3f3 244 Pfam PF01895 PhoU domain 124 209 5.4E-17 T 12-10-2018 IPR026022 PhoU domain ALFP_1128 7dbafa7363fdae677f19e867a6c5c3f3 244 Pfam PF01895 PhoU domain 21 107 1.5E-21 T 12-10-2018 IPR026022 PhoU domain ALFP_1128 7dbafa7363fdae677f19e867a6c5c3f3 244 Gene3D G3DSA:1.20.58.220 117 233 1.6E-34 T 12-10-2018 IPR038078 PhoU-like domain superfamily ALFP_1128 7dbafa7363fdae677f19e867a6c5c3f3 244 PIRSF PIRSF003107 2 223 2.7E-65 T 12-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 ALFP_1128 7dbafa7363fdae677f19e867a6c5c3f3 244 SUPERFAMILY SSF109755 7 227 4.19E-69 T 12-10-2018 ALFP_1128 7dbafa7363fdae677f19e867a6c5c3f3 244 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 7 217 2.0E-69 T 12-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 ALFP_1128 7dbafa7363fdae677f19e867a6c5c3f3 244 Gene3D G3DSA:1.20.58.220 1 116 2.0E-36 T 12-10-2018 IPR038078 PhoU-like domain superfamily ALFP_1333 4dd6caa1e87a51720170c134f040da0f 637 Pfam PF04632 Fusaric acid resistance protein family 15 618 1.0E-69 T 12-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 ALFP_0705 0ebfe60618cc88b2b9134bd70b234d06 73 Pfam PF11903 ParD-like antitoxin of type II bacterial toxin-antitoxin system 1 59 1.3E-25 T 12-10-2018 IPR021831 ParD-like antitoxin of type II bacterial toxin-antitoxin system ALFP_2764 4ddb168d9ad8aa9f87621e6d20677b5a 257 Gene3D G3DSA:3.30.1330.60 124 257 1.5E-38 T 12-10-2018 IPR036737 OmpA-like domain superfamily ALFP_2764 4ddb168d9ad8aa9f87621e6d20677b5a 257 Gene3D G3DSA:3.30.1450.10 47 123 2.3E-8 T 12-10-2018 IPR037873 BamE-like ALFP_2764 4ddb168d9ad8aa9f87621e6d20677b5a 257 SUPERFAMILY SSF103088 138 253 1.83E-31 T 12-10-2018 IPR036737 OmpA-like domain superfamily ALFP_2764 4ddb168d9ad8aa9f87621e6d20677b5a 257 Pfam PF00691 OmpA family 146 235 1.9E-19 T 12-10-2018 IPR006665 OmpA-like domain ALFP_2764 4ddb168d9ad8aa9f87621e6d20677b5a 257 PRINTS PR01021 OMPA domain signature 192 208 7.8E-12 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 ALFP_2764 4ddb168d9ad8aa9f87621e6d20677b5a 257 PRINTS PR01021 OMPA domain signature 146 168 7.8E-12 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 ALFP_2764 4ddb168d9ad8aa9f87621e6d20677b5a 257 PRINTS PR01021 OMPA domain signature 177 192 7.8E-12 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 ALFP_2764 4ddb168d9ad8aa9f87621e6d20677b5a 257 Pfam PF04355 SmpA / OmlA family 47 113 2.5E-17 T 12-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 ALFP_1906 c8fd92b0c873e5bf9df748bc13f63dd3 295 SUPERFAMILY SSF51182 31 195 2.82E-16 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_1906 c8fd92b0c873e5bf9df748bc13f63dd3 295 Gene3D G3DSA:2.60.120.10 8 100 6.7E-9 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_1906 c8fd92b0c873e5bf9df748bc13f63dd3 295 Pfam PF12833 Helix-turn-helix domain 182 257 2.5E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1906 c8fd92b0c873e5bf9df748bc13f63dd3 295 SMART SM00342 174 256 1.8E-19 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1906 c8fd92b0c873e5bf9df748bc13f63dd3 295 SUPERFAMILY SSF46689 214 258 2.78E-6 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1906 c8fd92b0c873e5bf9df748bc13f63dd3 295 Pfam PF02311 AraC-like ligand binding domain 32 100 8.2E-6 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 ALFP_1906 c8fd92b0c873e5bf9df748bc13f63dd3 295 Gene3D G3DSA:1.10.10.60 157 262 4.1E-18 T 12-10-2018 ALFP_2287 6dca2616063e6e8e335dec791c01ed63 153 TIGRFAM TIGR02286 PaaD: phenylacetic acid degradation protein PaaD 30 142 5.5E-49 T 12-10-2018 IPR011973 Phenylacetic acid degradation protein PaaD GO:0016790 ALFP_2287 6dca2616063e6e8e335dec791c01ed63 153 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 30 140 5.1E-25 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 ALFP_2287 6dca2616063e6e8e335dec791c01ed63 153 Gene3D G3DSA:3.10.129.10 12 152 4.4E-53 T 12-10-2018 ALFP_2287 6dca2616063e6e8e335dec791c01ed63 153 SUPERFAMILY SSF54637 11 137 1.01E-28 T 12-10-2018 IPR029069 HotDog domain superfamily ALFP_2287 6dca2616063e6e8e335dec791c01ed63 153 Pfam PF03061 Thioesterase superfamily 59 132 7.0E-13 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 ALFP_0419 113ac7b5d7b275185eb8eba0ed206a01 209 SUPERFAMILY SSF100950 11 204 4.05E-37 T 12-10-2018 IPR037171 NagB/RpiA transferase-like ALFP_0419 113ac7b5d7b275185eb8eba0ed206a01 209 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 58 198 2.5E-24 T 12-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase ALFP_0419 113ac7b5d7b275185eb8eba0ed206a01 209 Gene3D G3DSA:3.40.50.10420 9 206 1.1E-35 T 12-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily ALFP_0419 113ac7b5d7b275185eb8eba0ed206a01 209 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 51 198 5.8E-35 T 12-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase ALFP_1756 776f828d3e22f38b66341e6182fe385c 216 Gene3D G3DSA:3.90.320.10 1 209 2.3E-54 T 12-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal ALFP_1756 776f828d3e22f38b66341e6182fe385c 216 SUPERFAMILY SSF52980 2 208 3.91E-13 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 ALFP_3269 2670f52d2c721306ce6f94406961dff1 434 Gene3D G3DSA:3.40.50.150 148 432 2.4E-71 T 12-10-2018 ALFP_3269 2670f52d2c721306ce6f94406961dff1 434 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 321 332 - T 12-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 ALFP_3269 2670f52d2c721306ce6f94406961dff1 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 372 388 1.3E-21 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase ALFP_3269 2670f52d2c721306ce6f94406961dff1 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 415 432 1.3E-21 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase ALFP_3269 2670f52d2c721306ce6f94406961dff1 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 322 334 1.3E-21 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase ALFP_3269 2670f52d2c721306ce6f94406961dff1 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 225 239 1.3E-21 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase ALFP_3269 2670f52d2c721306ce6f94406961dff1 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 254 264 1.3E-21 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase ALFP_3269 2670f52d2c721306ce6f94406961dff1 434 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 99 429 6.6E-87 T 12-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 ALFP_3269 2670f52d2c721306ce6f94406961dff1 434 Gene3D G3DSA:1.10.940.10 92 147 1.6E-6 T 12-10-2018 IPR035926 NusB-like superfamily ALFP_3269 2670f52d2c721306ce6f94406961dff1 434 SUPERFAMILY SSF48013 7 154 1.63E-9 T 12-10-2018 IPR035926 NusB-like superfamily ALFP_3269 2670f52d2c721306ce6f94406961dff1 434 SUPERFAMILY SSF53335 146 432 1.98E-67 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_3269 2670f52d2c721306ce6f94406961dff1 434 Pfam PF01189 16S rRNA methyltransferase RsmB/F 244 428 1.7E-51 T 12-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 ALFP_3021 212d12556cba36cc87d8d882e3c6b06e 211 Pfam PF01810 LysE type translocator 14 200 2.8E-31 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 ALFP_3021 212d12556cba36cc87d8d882e3c6b06e 211 PIRSF PIRSF006324 1 203 5.4E-45 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 ALFP_2141 c6cd224d4338bb891ef9322807716471 166 Pfam PF02472 Biopolymer transport protein ExbD/TolR 15 136 7.5E-31 T 12-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 ALFP_2141 c6cd224d4338bb891ef9322807716471 166 Gene3D G3DSA:3.30.420.270 64 132 7.7E-12 T 12-10-2018 ALFP_1190 fd4811e17f318189755980ce2ea62112 129 SMART SM00448 6 120 9.2E-38 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_1190 fd4811e17f318189755980ce2ea62112 129 Pfam PF00072 Response regulator receiver domain 8 120 3.2E-32 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 ALFP_1190 fd4811e17f318189755980ce2ea62112 129 Gene3D G3DSA:3.40.50.2300 1 127 1.1E-39 T 12-10-2018 ALFP_1190 fd4811e17f318189755980ce2ea62112 129 SUPERFAMILY SSF52172 4 125 4.98E-37 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_2575 016fa4698a561518bec94e16d2aefb07 371 Pfam PF03060 Nitronate monooxygenase 8 349 9.9E-80 T 12-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 ALFP_2575 016fa4698a561518bec94e16d2aefb07 371 SUPERFAMILY SSF51412 7 345 6.41E-68 T 12-10-2018 ALFP_2575 016fa4698a561518bec94e16d2aefb07 371 Gene3D G3DSA:3.20.20.70 6 359 1.4E-113 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_2987 b6e6379e25a0036baabae819e3926a69 317 Pfam PF12889 Protein of unknown function (DUF3829) 40 313 1.1E-42 T 12-10-2018 IPR024291 Protein of unknown function DUF3829 ALFP_3328 a0b602019390752fb8e06bd4efcd408e 330 SUPERFAMILY SSF53850 115 292 1.3E-7 T 12-10-2018 ALFP_3328 a0b602019390752fb8e06bd4efcd408e 330 Gene3D G3DSA:3.40.190.150 33 320 6.2E-52 T 12-10-2018 ALFP_3328 a0b602019390752fb8e06bd4efcd408e 330 Gene3D G3DSA:3.40.190.10 127 255 6.2E-52 T 12-10-2018 ALFP_3328 a0b602019390752fb8e06bd4efcd408e 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 73 323 1.7E-19 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_3328 a0b602019390752fb8e06bd4efcd408e 330 PIRSF PIRSF017082 1 330 2.5E-73 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0262 04bc8f07eaae8c6ece6c6b1daab64479 87 SUPERFAMILY SSF64307 12 86 2.49E-12 T 12-10-2018 IPR036868 TusA-like domain superfamily ALFP_0262 04bc8f07eaae8c6ece6c6b1daab64479 87 Pfam PF10006 Uncharacterized conserved protein (DUF2249) 21 84 2.7E-14 T 12-10-2018 IPR018720 Domain of unknown function DUF2249 ALFP_0662 404428ab152000944f0fc0683d817024 125 Pfam PF04138 GtrA-like protein 8 122 1.5E-16 T 12-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 ALFP_0162 cf147fb8a239fa30fb77c355b18b98f7 206 SUPERFAMILY SSF52499 10 203 1.44E-44 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_0162 cf147fb8a239fa30fb77c355b18b98f7 206 Pfam PF00857 Isochorismatase family 22 197 8.3E-32 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 ALFP_0162 cf147fb8a239fa30fb77c355b18b98f7 206 Gene3D G3DSA:3.40.50.850 6 206 1.5E-56 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_2767 e05a9f789212fe174d92cbeb50e2295f 140 Pfam PF00239 Resolvase, N terminal domain 4 91 2.6E-28 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 ALFP_2767 e05a9f789212fe174d92cbeb50e2295f 140 SMART SM00857 1 92 9.1E-11 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 ALFP_2767 e05a9f789212fe174d92cbeb50e2295f 140 SUPERFAMILY SSF53041 2 92 2.49E-27 T 12-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 ALFP_2767 e05a9f789212fe174d92cbeb50e2295f 140 Gene3D G3DSA:3.40.50.1390 1 81 1.3E-27 T 12-10-2018 ALFP_2767 e05a9f789212fe174d92cbeb50e2295f 140 ProSitePatterns PS00398 Site-specific recombinases signature 2. 11 23 - T 12-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 ALFP_1650 a03e4a7eb3265ad884c1bf1efdeb1a24 57 Pfam PF07411 Domain of unknown function (DUF1508) 8 56 6.5E-22 T 12-10-2018 IPR010879 Domain of unknown function DUF1508 ALFP_1650 a03e4a7eb3265ad884c1bf1efdeb1a24 57 SUPERFAMILY SSF160113 1 56 9.42E-19 T 12-10-2018 IPR036913 YegP-like superfamily ALFP_1650 a03e4a7eb3265ad884c1bf1efdeb1a24 57 Gene3D G3DSA:3.30.160.160 1 48 8.2E-24 T 12-10-2018 ALFP_0336 ef4a33c4f6bc5d2f4cbd4698d69e1346 253 SMART SM00382 31 221 6.8E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0336 ef4a33c4f6bc5d2f4cbd4698d69e1346 253 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0336 ef4a33c4f6bc5d2f4cbd4698d69e1346 253 SUPERFAMILY SSF52540 2 227 1.72E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0336 ef4a33c4f6bc5d2f4cbd4698d69e1346 253 Pfam PF00005 ABC transporter 22 161 1.4E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0336 ef4a33c4f6bc5d2f4cbd4698d69e1346 253 Gene3D G3DSA:3.40.50.300 1 225 7.8E-60 T 12-10-2018 ALFP_3298 84061e585793188add6394c68f41e36b 80 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 19 75 3.6E-21 T 12-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 ALFP_3298 84061e585793188add6394c68f41e36b 80 Gene3D G3DSA:1.20.20.10 1 76 2.8E-27 T 12-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3298 84061e585793188add6394c68f41e36b 80 Pfam PF00137 ATP synthase subunit C 9 71 1.4E-9 T 12-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 ALFP_3298 84061e585793188add6394c68f41e36b 80 SUPERFAMILY SSF81333 4 77 1.31E-17 T 12-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily ALFP_3298 84061e585793188add6394c68f41e36b 80 Hamap MF_01396 ATP synthase subunit c [atpH]. 8 73 14.054 T 12-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_3298 84061e585793188add6394c68f41e36b 80 ProSitePatterns PS00605 ATP synthase c subunit signature. 38 59 - T 12-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 ALFP_0233 c4f598b802bb4afb4335bd6d585228ff 388 Gene3D G3DSA:1.10.10.10 314 383 2.6E-6 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0233 c4f598b802bb4afb4335bd6d585228ff 388 Pfam PF02481 DNA recombination-mediator protein A 87 296 5.1E-77 T 12-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 ALFP_0233 c4f598b802bb4afb4335bd6d585228ff 388 SUPERFAMILY SSF102405 96 305 1.83E-42 T 12-10-2018 ALFP_0233 c4f598b802bb4afb4335bd6d585228ff 388 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 85 305 2.1E-76 T 12-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 ALFP_0233 c4f598b802bb4afb4335bd6d585228ff 388 Gene3D G3DSA:3.40.50.450 5 309 6.1E-106 T 12-10-2018 ALFP_0015 84331cdf7c0b5375c662c01521bc295b 178 SMART SM00530 5 60 1.1E-11 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_0015 84331cdf7c0b5375c662c01521bc295b 178 SUPERFAMILY SSF51182 53 177 4.98E-20 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_0015 84331cdf7c0b5375c662c01521bc295b 178 Gene3D G3DSA:1.10.260.40 1 66 1.1E-15 T 12-10-2018 ALFP_0015 84331cdf7c0b5375c662c01521bc295b 178 Gene3D G3DSA:2.60.120.10 94 177 8.7E-13 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_0015 84331cdf7c0b5375c662c01521bc295b 178 Pfam PF01381 Helix-turn-helix 6 58 3.4E-12 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ALFP_0015 84331cdf7c0b5375c662c01521bc295b 178 Pfam PF07883 Cupin domain 105 171 3.5E-11 T 12-10-2018 IPR013096 Cupin 2, conserved barrel ALFP_0015 84331cdf7c0b5375c662c01521bc295b 178 SUPERFAMILY SSF47413 2 66 2.0E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 ALFP_1887 a957fd42964b4451ac119c58cede657c 280 Gene3D G3DSA:1.10.3720.10 1 273 3.1E-56 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1887 a957fd42964b4451ac119c58cede657c 280 SUPERFAMILY SSF161098 4 276 1.19E-60 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1887 a957fd42964b4451ac119c58cede657c 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 275 2.9E-21 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_3457 31551348e45d858fa7d6ccbf7cbe84a1 124 Gene3D G3DSA:3.10.180.10 1 120 3.3E-14 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_3457 31551348e45d858fa7d6ccbf7cbe84a1 124 SUPERFAMILY SSF54593 2 118 9.67E-18 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_3457 31551348e45d858fa7d6ccbf7cbe84a1 124 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 112 2.0E-10 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain ALFP_0834 c71b787d3a2a81637458caac4ffb537f 400 Gene3D G3DSA:1.20.1250.20 15 196 6.9E-12 T 12-10-2018 ALFP_0834 c71b787d3a2a81637458caac4ffb537f 400 Gene3D G3DSA:1.20.1250.20 208 390 1.0E-12 T 12-10-2018 ALFP_0834 c71b787d3a2a81637458caac4ffb537f 400 SUPERFAMILY SSF103473 16 386 4.84E-31 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_0834 c71b787d3a2a81637458caac4ffb537f 400 Pfam PF07690 Major Facilitator Superfamily 30 228 1.4E-12 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_3633 d64a05b52c2fdfe18f84badfc9d1b3a2 204 Gene3D G3DSA:3.40.50.12740 24 202 1.6E-24 T 12-10-2018 ALFP_3633 d64a05b52c2fdfe18f84badfc9d1b3a2 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 5.3E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3633 d64a05b52c2fdfe18f84badfc9d1b3a2 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 5.3E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3633 d64a05b52c2fdfe18f84badfc9d1b3a2 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 5.3E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3633 d64a05b52c2fdfe18f84badfc9d1b3a2 204 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 197 9.4E-14 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3633 d64a05b52c2fdfe18f84badfc9d1b3a2 204 SMART SM00421 143 200 5.2E-16 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3633 d64a05b52c2fdfe18f84badfc9d1b3a2 204 ProSitePatterns PS00622 LuxR-type HTH domain signature. 160 187 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ALFP_3633 d64a05b52c2fdfe18f84badfc9d1b3a2 204 SUPERFAMILY SSF46894 134 200 7.14E-15 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ALFP_2348 563ebf165c055bd36660fa207cf984bd 299 SUPERFAMILY SSF46785 6 111 2.33E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2348 563ebf165c055bd36660fa207cf984bd 299 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 5 293 2.4E-111 T 12-10-2018 IPR017685 HTH-type transcriptional regulator ArgP ALFP_2348 563ebf165c055bd36660fa207cf984bd 299 Gene3D G3DSA:3.40.190.290 89 294 1.7E-73 T 12-10-2018 ALFP_2348 563ebf165c055bd36660fa207cf984bd 299 Pfam PF03466 LysR substrate binding domain 88 289 3.4E-18 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_2348 563ebf165c055bd36660fa207cf984bd 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 1.1E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2348 563ebf165c055bd36660fa207cf984bd 299 SUPERFAMILY SSF53850 88 290 1.99E-23 T 12-10-2018 ALFP_2348 563ebf165c055bd36660fa207cf984bd 299 Gene3D G3DSA:1.10.10.10 1 83 1.1E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0372 e04dd805f6b06fde91ef5826f3428199 686 Pfam PF07715 TonB-dependent Receptor Plug Domain 48 151 7.1E-17 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_0372 e04dd805f6b06fde91ef5826f3428199 686 Gene3D G3DSA:2.40.170.20 163 686 3.0E-66 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_0372 e04dd805f6b06fde91ef5826f3428199 686 SUPERFAMILY SSF56935 35 686 1.1E-95 T 12-10-2018 ALFP_0372 e04dd805f6b06fde91ef5826f3428199 686 Gene3D G3DSA:2.170.130.10 43 161 1.3E-26 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_0372 e04dd805f6b06fde91ef5826f3428199 686 Pfam PF00593 TonB dependent receptor 277 684 6.0E-46 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_0744 d970db8c331c71d645b9118cfac4050b 252 Gene3D G3DSA:3.40.50.720 1 251 4.1E-85 T 12-10-2018 ALFP_0744 d970db8c331c71d645b9118cfac4050b 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 249 1.2E-64 T 12-10-2018 ALFP_0744 d970db8c331c71d645b9118cfac4050b 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.9E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0744 d970db8c331c71d645b9118cfac4050b 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.9E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0744 d970db8c331c71d645b9118cfac4050b 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.9E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0744 d970db8c331c71d645b9118cfac4050b 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 2.9E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0744 d970db8c331c71d645b9118cfac4050b 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.9E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0744 d970db8c331c71d645b9118cfac4050b 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.9E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0744 d970db8c331c71d645b9118cfac4050b 252 SUPERFAMILY SSF51735 4 251 6.13E-83 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0744 d970db8c331c71d645b9118cfac4050b 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 4.5E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0744 d970db8c331c71d645b9118cfac4050b 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 4.5E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0744 d970db8c331c71d645b9118cfac4050b 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 4.5E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0744 d970db8c331c71d645b9118cfac4050b 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_1074 25135b26701693dc0750942026107cd5 179 Gene3D G3DSA:3.30.300.70 15 87 1.2E-9 T 12-10-2018 IPR035956 RimP, N-terminal domain superfamily ALFP_1074 25135b26701693dc0750942026107cd5 179 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 18 172 18.977 T 12-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 ALFP_1074 25135b26701693dc0750942026107cd5 179 SUPERFAMILY SSF74942 91 172 2.22E-10 T 12-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily ALFP_1074 25135b26701693dc0750942026107cd5 179 Pfam PF17384 RimP C-terminal SH3 domain 97 170 1.1E-8 T 12-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal ALFP_1074 25135b26701693dc0750942026107cd5 179 Pfam PF02576 RimP N-terminal domain 24 90 1.9E-13 T 12-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal ALFP_1074 25135b26701693dc0750942026107cd5 179 SUPERFAMILY SSF75420 13 90 5.75E-15 T 12-10-2018 IPR035956 RimP, N-terminal domain superfamily ALFP_2945 be4669b16a0971eebac90049b1714d7b 800 Gene3D G3DSA:3.90.1170.50 2 138 4.2E-29 T 12-10-2018 ALFP_2945 be4669b16a0971eebac90049b1714d7b 800 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 155 718 1.4E-149 T 12-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 ALFP_2945 be4669b16a0971eebac90049b1714d7b 800 SMART SM01008 29 138 3.5E-24 T 12-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead ALFP_2945 be4669b16a0971eebac90049b1714d7b 800 Gene3D G3DSA:3.30.365.10 194 288 2.5E-58 T 12-10-2018 ALFP_2945 be4669b16a0971eebac90049b1714d7b 800 Gene3D G3DSA:3.30.365.10 463 633 1.6E-119 T 12-10-2018 ALFP_2945 be4669b16a0971eebac90049b1714d7b 800 Gene3D G3DSA:3.30.365.10 428 778 1.6E-119 T 12-10-2018 ALFP_2945 be4669b16a0971eebac90049b1714d7b 800 SUPERFAMILY SSF54665 13 160 1.96E-28 T 12-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily ALFP_2945 be4669b16a0971eebac90049b1714d7b 800 Gene3D G3DSA:3.30.365.10 177 403 2.5E-58 T 12-10-2018 ALFP_2945 be4669b16a0971eebac90049b1714d7b 800 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 30 138 6.8E-11 T 12-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead ALFP_2945 be4669b16a0971eebac90049b1714d7b 800 SUPERFAMILY SSF56003 130 781 2.36E-174 T 12-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 ALFP_2167 2d96ba9e137f5b74d297e5411fd91ddd 825 Pfam PF00773 RNB domain 269 608 4.5E-99 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 ALFP_2167 2d96ba9e137f5b74d297e5411fd91ddd 825 TIGRFAM TIGR02063 RNase_R: ribonuclease R 30 752 1.9E-244 T 12-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 ALFP_2167 2d96ba9e137f5b74d297e5411fd91ddd 825 SMART SM00955 269 609 3.2E-172 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 ALFP_2167 2d96ba9e137f5b74d297e5411fd91ddd 825 Hamap MF_01895 Ribonuclease R [rnr]. 48 751 52.808 T 12-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 ALFP_2167 2d96ba9e137f5b74d297e5411fd91ddd 825 Gene3D G3DSA:2.40.50.140 671 819 4.3E-20 T 12-10-2018 ALFP_2167 2d96ba9e137f5b74d297e5411fd91ddd 825 Gene3D G3DSA:2.40.50.140 75 156 1.9E-17 T 12-10-2018 ALFP_2167 2d96ba9e137f5b74d297e5411fd91ddd 825 SUPERFAMILY SSF50249 197 669 8.0E-132 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2167 2d96ba9e137f5b74d297e5411fd91ddd 825 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 85 751 2.8E-198 T 12-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 ALFP_2167 2d96ba9e137f5b74d297e5411fd91ddd 825 SUPERFAMILY SSF50249 670 750 1.09E-19 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2167 2d96ba9e137f5b74d297e5411fd91ddd 825 ProSitePatterns PS01175 Ribonuclease II family signature. 576 600 - T 12-10-2018 IPR022966 Ribonuclease II/R, conserved site ALFP_2167 2d96ba9e137f5b74d297e5411fd91ddd 825 SUPERFAMILY SSF50249 78 155 4.61E-15 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_2167 2d96ba9e137f5b74d297e5411fd91ddd 825 Pfam PF00575 S1 RNA binding domain 669 748 2.5E-10 T 12-10-2018 IPR003029 S1 domain GO:0003676 ALFP_2167 2d96ba9e137f5b74d297e5411fd91ddd 825 Pfam PF08206 Ribonuclease B OB domain 97 153 6.6E-18 T 12-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain ALFP_2167 2d96ba9e137f5b74d297e5411fd91ddd 825 SMART SM00357 96 154 2.9E-13 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 ALFP_2167 2d96ba9e137f5b74d297e5411fd91ddd 825 SMART SM00316 668 751 5.7E-13 T 12-10-2018 IPR022967 RNA-binding domain, S1 ALFP_0019 40d83c892fb0a4e8bbac2a4e52b34729 272 SUPERFAMILY SSF52096 8 261 5.57E-61 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_0019 40d83c892fb0a4e8bbac2a4e52b34729 272 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 255 1.0E-46 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 ALFP_0019 40d83c892fb0a4e8bbac2a4e52b34729 272 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 109 129 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 ALFP_0019 40d83c892fb0a4e8bbac2a4e52b34729 272 Gene3D G3DSA:3.90.226.10 4 209 4.7E-55 T 12-10-2018 ALFP_0019 40d83c892fb0a4e8bbac2a4e52b34729 272 Gene3D G3DSA:1.10.12.10 211 270 1.3E-7 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal ALFP_0591 457d83fff95576ceb5d0a2da4ee3eb52 262 TIGRFAM TIGR03234 OH-pyruv-isom: hydroxypyruvate isomerase 2 254 8.1E-119 T 12-10-2018 IPR017643 Hydroxypyruvate isomerase KEGG: 00630+5.3.1.22 ALFP_0591 457d83fff95576ceb5d0a2da4ee3eb52 262 Gene3D G3DSA:3.20.20.150 1 262 5.4E-80 T 12-10-2018 ALFP_0591 457d83fff95576ceb5d0a2da4ee3eb52 262 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 1.2E-35 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain ALFP_0591 457d83fff95576ceb5d0a2da4ee3eb52 262 SUPERFAMILY SSF51658 1 257 6.68E-88 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily ALFP_0591 457d83fff95576ceb5d0a2da4ee3eb52 262 PIRSF PIRSF006241 1 261 1.2E-96 T 12-10-2018 IPR026040 Hydroxypyruvate isomerase-like ALFP_0126 fca48f8f96208a8cf6e6a4e76826ecee 266 SMART SM00317 6 127 2.1E-26 T 12-10-2018 IPR001214 SET domain GO:0005515 ALFP_0126 fca48f8f96208a8cf6e6a4e76826ecee 266 Pfam PF00856 SET domain 18 120 1.3E-17 T 12-10-2018 IPR001214 SET domain GO:0005515 ALFP_0126 fca48f8f96208a8cf6e6a4e76826ecee 266 SUPERFAMILY SSF82199 5 147 7.72E-40 T 12-10-2018 ALFP_0126 fca48f8f96208a8cf6e6a4e76826ecee 266 Gene3D G3DSA:2.170.270.10 2 169 1.1E-39 T 12-10-2018 ALFP_1664 a436ba27fcb70243704c09e3e26676c6 335 Gene3D G3DSA:1.10.620.20 1 334 4.7E-107 T 12-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 ALFP_1664 a436ba27fcb70243704c09e3e26676c6 335 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 51 274 8.4E-59 T 12-10-2018 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 ALFP_1664 a436ba27fcb70243704c09e3e26676c6 335 PIRSF PIRSF000040 1 333 9.5E-99 T 12-10-2018 IPR012078 Methane/phenol monooxygenase, hydroxylase component GO:0016709|GO:0055114 ALFP_1664 a436ba27fcb70243704c09e3e26676c6 335 SUPERFAMILY SSF47240 1 330 1.19E-96 T 12-10-2018 IPR009078 Ferritin-like superfamily ALFP_3405 ec52cf411d2fccb53d0cc30ea52a7d9f 156 Pfam PF05638 Type VI secretion system effector, Hcp 2 121 5.6E-39 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp ALFP_3405 ec52cf411d2fccb53d0cc30ea52a7d9f 156 SUPERFAMILY SSF141452 1 155 1.15E-45 T 12-10-2018 IPR036624 Hcp1-like superfamily ALFP_3405 ec52cf411d2fccb53d0cc30ea52a7d9f 156 Gene3D G3DSA:2.30.110.20 1 156 9.1E-56 T 12-10-2018 IPR036624 Hcp1-like superfamily ALFP_2188 0188166868387fbcf314d66b0fff7ed8 339 SUPERFAMILY SSF53850 21 329 4.3E-74 T 12-10-2018 ALFP_2188 0188166868387fbcf314d66b0fff7ed8 339 TIGRFAM TIGR03261 phnS2: putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein 4 336 6.8E-156 T 12-10-2018 IPR017663 ABC transport system, 1-aminoethylphosphonate-binding protein, putative ALFP_2188 0188166868387fbcf314d66b0fff7ed8 339 PIRSF PIRSF002825 1 332 4.8E-92 T 12-10-2018 IPR026045 Ferric binding protein ALFP_2188 0188166868387fbcf314d66b0fff7ed8 339 Pfam PF13343 Bacterial extracellular solute-binding protein 73 313 7.1E-32 T 12-10-2018 ALFP_2188 0188166868387fbcf314d66b0fff7ed8 339 Gene3D G3DSA:3.40.190.10 129 313 1.5E-88 T 12-10-2018 ALFP_2188 0188166868387fbcf314d66b0fff7ed8 339 Gene3D G3DSA:3.40.190.10 28 301 1.5E-88 T 12-10-2018 ALFP_3309 2702632103d9b744f1f77c9c1a68f9f9 424 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 4 420 28.881 T 12-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 ALFP_3309 2702632103d9b744f1f77c9c1a68f9f9 424 Gene3D G3DSA:3.40.50.720 163 315 4.9E-42 T 12-10-2018 ALFP_3309 2702632103d9b744f1f77c9c1a68f9f9 424 PIRSF PIRSF000445 3 424 1.3E-145 T 12-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 ALFP_3309 2702632103d9b744f1f77c9c1a68f9f9 424 SUPERFAMILY SSF69075 319 417 2.09E-24 T 12-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 ALFP_3309 2702632103d9b744f1f77c9c1a68f9f9 424 SUPERFAMILY SSF51735 165 317 1.63E-34 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3309 2702632103d9b744f1f77c9c1a68f9f9 424 Gene3D G3DSA:3.30.460.30 3 160 1.5E-53 T 12-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 ALFP_3309 2702632103d9b744f1f77c9c1a68f9f9 424 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 101 124 - T 12-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 ALFP_3309 2702632103d9b744f1f77c9c1a68f9f9 424 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 5 410 3.3E-126 T 12-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 ALFP_3309 2702632103d9b744f1f77c9c1a68f9f9 424 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 174 306 8.7E-43 T 12-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase ALFP_3309 2702632103d9b744f1f77c9c1a68f9f9 424 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 322 416 7.1E-25 T 12-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 ALFP_3309 2702632103d9b744f1f77c9c1a68f9f9 424 SUPERFAMILY SSF69742 5 160 3.4E-44 T 12-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 ALFP_3309 2702632103d9b744f1f77c9c1a68f9f9 424 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 9 158 8.9E-47 T 12-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 ALFP_2130 1376ede434fc10040555cfa35b888390 93 PIRSF PIRSF028784 1 93 4.1E-26 T 12-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 ALFP_2130 1376ede434fc10040555cfa35b888390 93 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 34 85 1.0E-19 T 12-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 ALFP_1527 490df0c5861cea4a959d6c104ca6e240 107 Gene3D G3DSA:1.10.3730.20 2 107 2.2E-29 T 12-10-2018 ALFP_1527 490df0c5861cea4a959d6c104ca6e240 107 Pfam PF00893 Small Multidrug Resistance protein 4 95 2.6E-26 T 12-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 ALFP_1527 490df0c5861cea4a959d6c104ca6e240 107 SUPERFAMILY SSF103481 8 103 8.63E-19 T 12-10-2018 ALFP_0483 5485169bcdb26907cee700230769851e 201 SUPERFAMILY SSF55729 27 196 2.74E-16 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_0483 5485169bcdb26907cee700230769851e 201 Pfam PF00583 Acetyltransferase (GNAT) family 71 176 2.5E-10 T 12-10-2018 IPR000182 GNAT domain ALFP_0483 5485169bcdb26907cee700230769851e 201 Gene3D G3DSA:3.40.630.30 45 186 4.7E-11 T 12-10-2018 ALFP_2854 e090a585bbd4a9ee678c22b3dc7acc9d 340 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 324 2.6E-43 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_2506 4973e178be1d8945e8e6f4cefeaef0ca 316 Gene3D G3DSA:1.10.10.10 1 86 2.8E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2506 4973e178be1d8945e8e6f4cefeaef0ca 316 Pfam PF03466 LysR substrate binding domain 90 292 4.3E-38 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_2506 4973e178be1d8945e8e6f4cefeaef0ca 316 Gene3D G3DSA:3.40.190.10 167 270 3.9E-85 T 12-10-2018 ALFP_2506 4973e178be1d8945e8e6f4cefeaef0ca 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.0E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2506 4973e178be1d8945e8e6f4cefeaef0ca 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.0E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2506 4973e178be1d8945e8e6f4cefeaef0ca 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.0E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2506 4973e178be1d8945e8e6f4cefeaef0ca 316 Gene3D G3DSA:3.40.190.10 92 305 3.9E-85 T 12-10-2018 ALFP_2506 4973e178be1d8945e8e6f4cefeaef0ca 316 SUPERFAMILY SSF53850 92 301 2.05E-37 T 12-10-2018 ALFP_2506 4973e178be1d8945e8e6f4cefeaef0ca 316 SUPERFAMILY SSF46785 13 113 2.18E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2506 4973e178be1d8945e8e6f4cefeaef0ca 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 64 1.3E-11 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2168 80652c9e5f6370e077d83ae7a671dcc3 80 Pfam PF00403 Heavy-metal-associated domain 11 62 8.2E-10 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 ALFP_2168 80652c9e5f6370e077d83ae7a671dcc3 80 Gene3D G3DSA:3.30.70.100 1 66 3.4E-13 T 12-10-2018 ALFP_2168 80652c9e5f6370e077d83ae7a671dcc3 80 SUPERFAMILY SSF55008 2 64 5.37E-13 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 ALFP_2126 429a768173daa78a804077d9ddf4aad9 921 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 361 380 1.2E-40 T 12-10-2018 ALFP_2126 429a768173daa78a804077d9ddf4aad9 921 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 252 264 1.2E-40 T 12-10-2018 ALFP_2126 429a768173daa78a804077d9ddf4aad9 921 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 21 46 1.2E-40 T 12-10-2018 ALFP_2126 429a768173daa78a804077d9ddf4aad9 921 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 96 117 1.2E-40 T 12-10-2018 ALFP_2126 429a768173daa78a804077d9ddf4aad9 921 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 184 210 1.2E-40 T 12-10-2018 ALFP_2126 429a768173daa78a804077d9ddf4aad9 921 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 49 69 1.2E-40 T 12-10-2018 ALFP_2126 429a768173daa78a804077d9ddf4aad9 921 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 162 183 1.2E-40 T 12-10-2018 ALFP_2126 429a768173daa78a804077d9ddf4aad9 921 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 7 59 3.6E-8 T 12-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2126 429a768173daa78a804077d9ddf4aad9 921 Pfam PF00361 Proton-conducting membrane transporter 72 349 8.4E-65 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2126 429a768173daa78a804077d9ddf4aad9 921 Pfam PF13244 Domain of unknown function (DUF4040) 559 624 2.6E-17 T 12-10-2018 IPR025383 Domain of unknown function DUF4040 ALFP_2126 429a768173daa78a804077d9ddf4aad9 921 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 766 888 4.9E-31 T 12-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein ALFP_3621 1f4ace134e52635f4b6163c3732f5b61 61 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 6 60 1.5E-24 T 12-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3621 1f4ace134e52635f4b6163c3732f5b61 61 PIRSF PIRSF002211 1 61 1.6E-26 T 12-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3621 1f4ace134e52635f4b6163c3732f5b61 61 SUPERFAMILY SSF55129 4 60 1.96E-20 T 12-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily ALFP_3621 1f4ace134e52635f4b6163c3732f5b61 61 Gene3D G3DSA:3.30.1390.20 2 60 1.2E-24 T 12-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily ALFP_3621 1f4ace134e52635f4b6163c3732f5b61 61 ProSitePatterns PS00634 Ribosomal protein L30 signature. 24 56 - T 12-10-2018 IPR018038 Ribosomal protein L30, conserved site ALFP_3621 1f4ace134e52635f4b6163c3732f5b61 61 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 60 20.604 T 12-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3621 1f4ace134e52635f4b6163c3732f5b61 61 Pfam PF00327 Ribosomal protein L30p/L7e 6 56 2.1E-18 T 12-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain ALFP_3423 3ffc3e47b69943eba844e27fb1d6462f 243 Pfam PF04333 MlaA lipoprotein 23 219 3.7E-66 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 ALFP_3423 3ffc3e47b69943eba844e27fb1d6462f 243 PRINTS PR01805 VacJ lipoprotein signature 24 37 7.5E-25 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 ALFP_3423 3ffc3e47b69943eba844e27fb1d6462f 243 PRINTS PR01805 VacJ lipoprotein signature 128 145 7.5E-25 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 ALFP_3423 3ffc3e47b69943eba844e27fb1d6462f 243 PRINTS PR01805 VacJ lipoprotein signature 92 109 7.5E-25 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 ALFP_3423 3ffc3e47b69943eba844e27fb1d6462f 243 PRINTS PR01805 VacJ lipoprotein signature 41 57 7.5E-25 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 ALFP_2308 b9dbc3a72a4230dbb6c0d739628c5784 292 SUPERFAMILY SSF52768 2 291 7.19E-99 T 12-10-2018 IPR023696 Ureohydrolase domain superfamily ALFP_2308 b9dbc3a72a4230dbb6c0d739628c5784 292 Pfam PF00850 Histone deacetylase domain 5 288 6.3E-80 T 12-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 ALFP_2308 b9dbc3a72a4230dbb6c0d739628c5784 292 PRINTS PR01270 Histone deacetylase superfamily signature 219 229 3.1E-18 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 ALFP_2308 b9dbc3a72a4230dbb6c0d739628c5784 292 PRINTS PR01270 Histone deacetylase superfamily signature 107 130 3.1E-18 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 ALFP_2308 b9dbc3a72a4230dbb6c0d739628c5784 292 PRINTS PR01270 Histone deacetylase superfamily signature 141 156 3.1E-18 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 ALFP_2308 b9dbc3a72a4230dbb6c0d739628c5784 292 Gene3D G3DSA:3.40.800.20 1 292 1.1E-111 T 12-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 ALFP_2031 0c6738a6081297a50ea739153d9dd504 280 Pfam PF00480 ROK family 10 276 8.3E-23 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 ALFP_2031 0c6738a6081297a50ea739153d9dd504 280 Gene3D G3DSA:3.30.420.40 4 101 7.4E-6 T 12-10-2018 ALFP_2031 0c6738a6081297a50ea739153d9dd504 280 SUPERFAMILY SSF53067 10 278 3.89E-34 T 12-10-2018 ALFP_2031 0c6738a6081297a50ea739153d9dd504 280 Gene3D G3DSA:3.30.420.40 102 278 1.5E-30 T 12-10-2018 ALFP_1841 b24f258eaa553229a816748c3e99abf7 278 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 56 85 2.0E-8 T 12-10-2018 IPR025713 Motility protein B, N-terminal domain ALFP_1841 b24f258eaa553229a816748c3e99abf7 278 Pfam PF00691 OmpA family 162 260 1.7E-20 T 12-10-2018 IPR006665 OmpA-like domain ALFP_1841 b24f258eaa553229a816748c3e99abf7 278 SUPERFAMILY SSF103088 151 266 1.15E-30 T 12-10-2018 IPR036737 OmpA-like domain superfamily ALFP_1841 b24f258eaa553229a816748c3e99abf7 278 Gene3D G3DSA:3.30.1330.60 128 274 4.9E-47 T 12-10-2018 IPR036737 OmpA-like domain superfamily ALFP_1865 7628fd572d2d4928ad95cf4051bef022 253 SUPERFAMILY SSF55811 75 230 8.26E-39 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 ALFP_1865 7628fd572d2d4928ad95cf4051bef022 253 ProSitePatterns PS00893 Nudix box signature. 156 177 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 ALFP_1865 7628fd572d2d4928ad95cf4051bef022 253 Pfam PF00293 NUDIX domain 127 230 2.7E-17 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 ALFP_1865 7628fd572d2d4928ad95cf4051bef022 253 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 90 117 7.1E-7 T 12-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 ALFP_1865 7628fd572d2d4928ad95cf4051bef022 253 Gene3D G3DSA:3.90.79.20 2 122 2.8E-18 T 12-10-2018 ALFP_1865 7628fd572d2d4928ad95cf4051bef022 253 Gene3D G3DSA:3.90.79.10 123 248 4.8E-35 T 12-10-2018 ALFP_3155 c15c401945ca62be763f6a0f58ef08d0 102 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 19 97 5.7E-18 T 12-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 ALFP_3155 c15c401945ca62be763f6a0f58ef08d0 102 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 3 102 9.5E-25 T 12-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 ALFP_3155 c15c401945ca62be763f6a0f58ef08d0 102 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 102 20.358 T 12-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 ALFP_3155 c15c401945ca62be763f6a0f58ef08d0 102 Gene3D G3DSA:1.10.20.60 1 100 6.2E-25 T 12-10-2018 ALFP_3155 c15c401945ca62be763f6a0f58ef08d0 102 SUPERFAMILY SSF141000 2 100 2.09E-22 T 12-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 ALFP_2483 a8ef3b402bd4c7be34a81256ed0cd835 156 Pfam PF06271 RDD family 5 140 1.9E-16 T 12-10-2018 IPR010432 RDD ALFP_2868 743c92234a20d1d81adb94a066a77fbb 467 PIRSF PIRSF006060 1 462 4.6E-68 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 ALFP_2868 743c92234a20d1d81adb94a066a77fbb 467 Pfam PF00324 Amino acid permease 21 430 2.2E-105 T 12-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 ALFP_2868 743c92234a20d1d81adb94a066a77fbb 467 Gene3D G3DSA:1.20.1740.10 14 462 1.0E-62 T 12-10-2018 ALFP_2868 743c92234a20d1d81adb94a066a77fbb 467 ProSitePatterns PS00218 Amino acid permeases signature. 45 75 - T 12-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 ALFP_2600 682efc270c454de406ade0650939d7f4 338 SUPERFAMILY SSF48179 183 332 2.04E-69 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_2600 682efc270c454de406ade0650939d7f4 338 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 177 1.8E-74 T 12-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 ALFP_2600 682efc270c454de406ade0650939d7f4 338 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 326 1.0E-134 T 12-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 ALFP_2600 682efc270c454de406ade0650939d7f4 338 Gene3D G3DSA:3.40.50.720 1 181 1.1E-77 T 12-10-2018 ALFP_2600 682efc270c454de406ade0650939d7f4 338 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 183 326 1.1E-63 T 12-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 ALFP_2600 682efc270c454de406ade0650939d7f4 338 Gene3D G3DSA:1.10.3730.40 182 338 7.7E-73 T 12-10-2018 ALFP_2600 682efc270c454de406ade0650939d7f4 338 SUPERFAMILY SSF51735 1 182 6.23E-75 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2600 682efc270c454de406ade0650939d7f4 338 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 1 328 44.737 T 12-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 ALFP_2600 682efc270c454de406ade0650939d7f4 338 PIRSF PIRSF000116 2 205 5.7E-46 T 12-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 ALFP_2600 682efc270c454de406ade0650939d7f4 338 PIRSF PIRSF000116 201 332 3.0E-13 T 12-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 ALFP_0850 846e9df6e675183d60b6fb4af99f05db 298 Pfam PF03547 Membrane transport protein 154 294 2.0E-11 T 12-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 ALFP_0850 846e9df6e675183d60b6fb4af99f05db 298 Pfam PF03547 Membrane transport protein 8 130 4.4E-7 T 12-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 ALFP_2617 632b772baca1d949ff7e7dfd7d9c6ed6 431 Pfam PF07690 Major Facilitator Superfamily 19 387 3.5E-27 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_2617 632b772baca1d949ff7e7dfd7d9c6ed6 431 ProSitePatterns PS00217 Sugar transport proteins signature 2. 119 144 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ALFP_2617 632b772baca1d949ff7e7dfd7d9c6ed6 431 SUPERFAMILY SSF103473 5 428 3.66E-64 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2617 632b772baca1d949ff7e7dfd7d9c6ed6 431 Gene3D G3DSA:1.20.1250.20 6 431 8.5E-66 T 12-10-2018 ALFP_0825 9ed5ebf562667a1a79c333f47b422354 293 Pfam PF01863 Protein of unknown function DUF45 70 284 1.8E-54 T 12-10-2018 IPR002725 Protein of unknown function DUF45 ALFP_0825 9ed5ebf562667a1a79c333f47b422354 293 Gene3D G3DSA:3.30.2010.10 194 284 8.3E-16 T 12-10-2018 ALFP_1886 926eed5ca3b17c1f80efe028e9ac9ba4 361 Gene3D G3DSA:2.40.50.140 293 342 1.2E-18 T 12-10-2018 ALFP_1886 926eed5ca3b17c1f80efe028e9ac9ba4 361 Pfam PF08402 TOBE domain 279 346 3.2E-6 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 ALFP_1886 926eed5ca3b17c1f80efe028e9ac9ba4 361 Pfam PF00005 ABC transporter 21 162 6.1E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_1886 926eed5ca3b17c1f80efe028e9ac9ba4 361 SUPERFAMILY SSF52540 4 245 2.43E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1886 926eed5ca3b17c1f80efe028e9ac9ba4 361 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_1886 926eed5ca3b17c1f80efe028e9ac9ba4 361 SUPERFAMILY SSF50331 237 359 1.43E-23 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal ALFP_1886 926eed5ca3b17c1f80efe028e9ac9ba4 361 Gene3D G3DSA:2.40.50.100 240 353 1.2E-18 T 12-10-2018 ALFP_1886 926eed5ca3b17c1f80efe028e9ac9ba4 361 Gene3D G3DSA:3.40.50.300 1 239 7.2E-74 T 12-10-2018 ALFP_1886 926eed5ca3b17c1f80efe028e9ac9ba4 361 SMART SM00382 29 213 5.0E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2005 64590577174690791992a553334b9718 233 Pfam PF00108 Thiolase, N-terminal domain 1 226 7.4E-65 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 ALFP_2005 64590577174690791992a553334b9718 233 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 52 70 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 ALFP_2005 64590577174690791992a553334b9718 233 Gene3D G3DSA:3.40.47.10 1 230 1.5E-68 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2005 64590577174690791992a553334b9718 233 SUPERFAMILY SSF53901 2 230 3.23E-59 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2005 64590577174690791992a553334b9718 233 Gene3D G3DSA:3.40.47.10 94 160 1.5E-68 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_1555 2218890131d0f02f51ae0fe0ad700bce 477 Gene3D G3DSA:1.20.1600.10 63 474 1.7E-117 T 12-10-2018 ALFP_1555 2218890131d0f02f51ae0fe0ad700bce 477 Gene3D G3DSA:2.20.200.10 110 362 1.7E-117 T 12-10-2018 ALFP_1555 2218890131d0f02f51ae0fe0ad700bce 477 Pfam PF02321 Outer membrane efflux protein 294 471 6.6E-20 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_1555 2218890131d0f02f51ae0fe0ad700bce 477 Pfam PF02321 Outer membrane efflux protein 73 252 3.2E-27 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_1555 2218890131d0f02f51ae0fe0ad700bce 477 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 20 473 4.7E-100 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 ALFP_1555 2218890131d0f02f51ae0fe0ad700bce 477 SUPERFAMILY SSF56954 6 475 1.83E-96 T 12-10-2018 ALFP_1255 0ffb3d1a4645a17210dddf8ae6de552d 576 SMART SM00283 279 526 7.5E-75 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 ALFP_1255 0ffb3d1a4645a17210dddf8ae6de552d 576 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 338 494 4.4E-50 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 ALFP_1255 0ffb3d1a4645a17210dddf8ae6de552d 576 SUPERFAMILY SSF55785 20 114 3.84E-27 T 12-10-2018 IPR035965 PAS domain superfamily ALFP_1255 0ffb3d1a4645a17210dddf8ae6de552d 576 Gene3D G3DSA:1.10.287.950 223 527 2.0E-78 T 12-10-2018 ALFP_1255 0ffb3d1a4645a17210dddf8ae6de552d 576 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 24 113 1.0E-14 T 12-10-2018 IPR000014 PAS domain ALFP_1255 0ffb3d1a4645a17210dddf8ae6de552d 576 SUPERFAMILY SSF58104 253 527 3.79E-68 T 12-10-2018 ALFP_1255 0ffb3d1a4645a17210dddf8ae6de552d 576 SMART SM00304 223 278 9.7E-4 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 ALFP_1255 0ffb3d1a4645a17210dddf8ae6de552d 576 Pfam PF08447 PAS fold 31 114 6.1E-16 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 ALFP_1255 0ffb3d1a4645a17210dddf8ae6de552d 576 SMART SM00091 8 75 3.2E-4 T 12-10-2018 IPR000014 PAS domain ALFP_1255 0ffb3d1a4645a17210dddf8ae6de552d 576 Gene3D G3DSA:3.30.450.20 14 144 3.4E-24 T 12-10-2018 ALFP_1255 0ffb3d1a4645a17210dddf8ae6de552d 576 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 300 329 2.5E-55 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1255 0ffb3d1a4645a17210dddf8ae6de552d 576 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 377 404 2.5E-55 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1255 0ffb3d1a4645a17210dddf8ae6de552d 576 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 454 483 2.5E-55 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1255 0ffb3d1a4645a17210dddf8ae6de552d 576 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 2.5E-55 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_0365 2c38071554826ddec3823b3b28444ee9 311 Gene3D G3DSA:3.20.20.70 1 307 1.1E-68 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0365 2c38071554826ddec3823b3b28444ee9 311 Pfam PF03060 Nitronate monooxygenase 5 294 2.8E-22 T 12-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 ALFP_0365 2c38071554826ddec3823b3b28444ee9 311 SUPERFAMILY SSF51412 2 273 9.71E-57 T 12-10-2018 ALFP_0537 c0fc25343d116069b6e8fce54c8e133b 735 Gene3D G3DSA:2.40.170.20 188 734 7.6E-130 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_0537 c0fc25343d116069b6e8fce54c8e133b 735 SUPERFAMILY SSF56935 40 734 3.66E-130 T 12-10-2018 ALFP_0537 c0fc25343d116069b6e8fce54c8e133b 735 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 78 734 2.7E-97 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 ALFP_0537 c0fc25343d116069b6e8fce54c8e133b 735 Pfam PF07715 TonB-dependent Receptor Plug Domain 77 174 4.6E-19 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_0537 c0fc25343d116069b6e8fce54c8e133b 735 Pfam PF00593 TonB dependent receptor 288 733 1.1E-55 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_0537 c0fc25343d116069b6e8fce54c8e133b 735 Gene3D G3DSA:2.170.130.10 59 186 7.4E-41 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_0339 99e6ae2a1c66f4c6e47e5398421bb9ac 314 Gene3D G3DSA:3.40.190.10 62 276 4.6E-53 T 12-10-2018 ALFP_0339 99e6ae2a1c66f4c6e47e5398421bb9ac 314 SMART SM00079 59 279 0.003 T 12-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 ALFP_0339 99e6ae2a1c66f4c6e47e5398421bb9ac 314 Gene3D G3DSA:3.40.190.10 145 239 4.6E-53 T 12-10-2018 ALFP_0339 99e6ae2a1c66f4c6e47e5398421bb9ac 314 SUPERFAMILY SSF53850 35 280 6.86E-57 T 12-10-2018 ALFP_0339 99e6ae2a1c66f4c6e47e5398421bb9ac 314 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 61 278 6.3E-51 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_0339 99e6ae2a1c66f4c6e47e5398421bb9ac 314 SMART SM00062 59 280 2.7E-47 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_2615 1f909fd205dce8d7d7d2e1a072657cc5 108 SMART SM00028 50 83 0.64 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_2615 1f909fd205dce8d7d7d2e1a072657cc5 108 SMART SM00028 16 49 0.0023 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_2615 1f909fd205dce8d7d7d2e1a072657cc5 108 Gene3D G3DSA:1.25.40.10 1 107 7.0E-24 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2615 1f909fd205dce8d7d7d2e1a072657cc5 108 Pfam PF14559 Tetratricopeptide repeat 27 77 7.3E-10 T 12-10-2018 ALFP_2615 1f909fd205dce8d7d7d2e1a072657cc5 108 SUPERFAMILY SSF48452 5 85 2.73E-14 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2880 969765c2c43eb01df660824304ec6044 472 SUPERFAMILY SSF75304 2 458 2.62E-108 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_2880 969765c2c43eb01df660824304ec6044 472 ProSitePatterns PS00571 Amidases signature. 150 181 - T 12-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 ALFP_2880 969765c2c43eb01df660824304ec6044 472 Gene3D G3DSA:3.90.1300.10 7 460 3.9E-114 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_2880 969765c2c43eb01df660824304ec6044 472 Pfam PF01425 Amidase 30 450 1.7E-92 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_0572 1f70130a4589f98a60ea5cde1bb3f01e 592 Pfam PF17243 POTRA domain TamA domain 1 33 102 1.7E-8 T 12-10-2018 IPR035243 TamA, POTRA domain 1 ALFP_0572 1f70130a4589f98a60ea5cde1bb3f01e 592 Pfam PF01103 Surface antigen 397 592 5.0E-24 T 12-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 ALFP_0572 1f70130a4589f98a60ea5cde1bb3f01e 592 Gene3D G3DSA:2.40.160.50 282 591 6.7E-49 T 12-10-2018 ALFP_0572 1f70130a4589f98a60ea5cde1bb3f01e 592 Gene3D G3DSA:3.10.20.310 199 281 8.8E-10 T 12-10-2018 ALFP_2778 93dbc4924b6ab4a811328300f6f0d4c3 143 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site ALFP_2778 93dbc4924b6ab4a811328300f6f0d4c3 143 PRINTS PR00813 Bacterial general secretion pathway protein G signature 48 66 3.5E-18 T 12-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 ALFP_2778 93dbc4924b6ab4a811328300f6f0d4c3 143 PRINTS PR00813 Bacterial general secretion pathway protein G signature 12 37 3.5E-18 T 12-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 ALFP_2778 93dbc4924b6ab4a811328300f6f0d4c3 143 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 33 9.9E-9 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site ALFP_2778 93dbc4924b6ab4a811328300f6f0d4c3 143 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 32 6.0E-9 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site ALFP_2778 93dbc4924b6ab4a811328300f6f0d4c3 143 Pfam PF08334 Type II secretion system (T2SS), protein G 36 142 2.3E-42 T 12-10-2018 IPR013545 Type II secretion system protein G ALFP_2778 93dbc4924b6ab4a811328300f6f0d4c3 143 SUPERFAMILY SSF54523 39 143 3.98E-38 T 12-10-2018 ALFP_2778 93dbc4924b6ab4a811328300f6f0d4c3 143 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 11 143 4.2E-57 T 12-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 ALFP_2778 93dbc4924b6ab4a811328300f6f0d4c3 143 Gene3D G3DSA:3.30.700.10 37 142 2.6E-39 T 12-10-2018 ALFP_3122 2e7cad080be57eeb338502beefc60dd3 203 Gene3D G3DSA:3.90.1150.10 9 68 1.1E-64 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_3122 2e7cad080be57eeb338502beefc60dd3 203 Pfam PF00202 Aminotransferase class-III 32 173 9.0E-31 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_3122 2e7cad080be57eeb338502beefc60dd3 203 Gene3D G3DSA:3.40.640.10 69 195 1.1E-64 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_3122 2e7cad080be57eeb338502beefc60dd3 203 SUPERFAMILY SSF53383 2 193 1.6E-58 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_0341 eb22bec03c1f901290e1a3f9f0319897 223 Gene3D G3DSA:1.10.3720.10 8 221 3.2E-45 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0341 eb22bec03c1f901290e1a3f9f0319897 223 SUPERFAMILY SSF161098 19 206 1.03E-39 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0341 eb22bec03c1f901290e1a3f9f0319897 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 39 219 6.9E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0341 eb22bec03c1f901290e1a3f9f0319897 223 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 18 113 6.7E-26 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 ALFP_2421 72bdec6d3f38f4044c2b364181333d6a 254 SUPERFAMILY SSF161098 51 231 1.23E-27 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2421 72bdec6d3f38f4044c2b364181333d6a 254 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 70 242 1.2E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_2421 72bdec6d3f38f4044c2b364181333d6a 254 Gene3D G3DSA:1.10.3720.10 51 242 2.1E-22 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0976 c974aafc0b85c226ef697de990147ac1 188 Gene3D G3DSA:1.25.40.10 12 181 3.4E-18 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_0976 c974aafc0b85c226ef697de990147ac1 188 Pfam PF13181 Tetratricopeptide repeat 114 144 0.11 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_0976 c974aafc0b85c226ef697de990147ac1 188 SMART SM00028 38 71 200.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_0976 c974aafc0b85c226ef697de990147ac1 188 SMART SM00028 112 145 3.3E-4 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_0976 c974aafc0b85c226ef697de990147ac1 188 SMART SM00028 78 111 59.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 ALFP_0976 c974aafc0b85c226ef697de990147ac1 188 SUPERFAMILY SSF48452 47 159 1.05E-16 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_0726 a038bdba1e5038f4cd246d3a0fa279a3 459 Gene3D G3DSA:1.20.1250.20 19 448 5.1E-66 T 12-10-2018 ALFP_0726 a038bdba1e5038f4cd246d3a0fa279a3 459 SUPERFAMILY SSF103473 19 438 7.85E-68 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_0726 a038bdba1e5038f4cd246d3a0fa279a3 459 ProSitePatterns PS00217 Sugar transport proteins signature 2. 131 156 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ALFP_0726 a038bdba1e5038f4cd246d3a0fa279a3 459 Pfam PF00083 Sugar (and other) transporter 26 230 1.0E-19 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ALFP_0726 a038bdba1e5038f4cd246d3a0fa279a3 459 Pfam PF07690 Major Facilitator Superfamily 290 434 2.7E-11 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_0726 a038bdba1e5038f4cd246d3a0fa279a3 459 ProSitePatterns PS00216 Sugar transport proteins signature 1. 302 319 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ALFP_3552 46674150ade8c28ec1122788d04dc190 157 Gene3D G3DSA:1.10.1660.10 1 118 1.4E-26 T 12-10-2018 ALFP_3552 46674150ade8c28ec1122788d04dc190 157 SMART SM00422 1 69 1.0E-14 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_3552 46674150ade8c28ec1122788d04dc190 157 SUPERFAMILY SSF46955 1 120 5.13E-24 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily ALFP_3552 46674150ade8c28ec1122788d04dc190 157 Pfam PF13411 MerR HTH family regulatory protein 1 66 9.9E-15 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ALFP_2698 fbc4fc08be0a1ad8b5f840acac0e83fe 182 Pfam PF00866 Ring hydroxylating beta subunit 29 174 7.1E-47 T 12-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 ALFP_2698 fbc4fc08be0a1ad8b5f840acac0e83fe 182 Gene3D G3DSA:3.10.450.50 2 182 8.4E-59 T 12-10-2018 ALFP_2698 fbc4fc08be0a1ad8b5f840acac0e83fe 182 SUPERFAMILY SSF54427 14 181 1.4E-43 T 12-10-2018 IPR032710 NTF2-like domain superfamily ALFP_2319 8dfc215daa9c993eb68e2b534abe4924 225 Hamap MF_00238 Cytidylate kinase [cmk]. 7 221 32.688 T 12-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 ALFP_2319 8dfc215daa9c993eb68e2b534abe4924 225 SUPERFAMILY SSF52540 8 218 7.72E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2319 8dfc215daa9c993eb68e2b534abe4924 225 Gene3D G3DSA:3.40.50.300 3 224 2.7E-78 T 12-10-2018 ALFP_2319 8dfc215daa9c993eb68e2b534abe4924 225 Pfam PF02224 Cytidylate kinase 9 216 8.7E-75 T 12-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 ALFP_2319 8dfc215daa9c993eb68e2b534abe4924 225 TIGRFAM TIGR00017 cmk: cytidylate kinase 7 215 3.1E-73 T 12-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 ALFP_1649 59741d3d8aad360c3e40ed98a5052dee 206 Pfam PF03006 Haemolysin-III related 5 197 5.4E-41 T 12-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 ALFP_1649 59741d3d8aad360c3e40ed98a5052dee 206 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 5 203 4.7E-63 T 12-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 ALFP_1095 c7a64cdc4670772369fef5aa57d5fd2b 283 SMART SM00450 6 132 1.0E-21 T 12-10-2018 IPR001763 Rhodanese-like domain ALFP_1095 c7a64cdc4670772369fef5aa57d5fd2b 283 SMART SM00450 158 278 3.0E-4 T 12-10-2018 IPR001763 Rhodanese-like domain ALFP_1095 c7a64cdc4670772369fef5aa57d5fd2b 283 ProSitePatterns PS00380 Rhodanese signature 1. 39 50 - T 12-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 ALFP_1095 c7a64cdc4670772369fef5aa57d5fd2b 283 SUPERFAMILY SSF52821 4 145 1.7E-41 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_1095 c7a64cdc4670772369fef5aa57d5fd2b 283 SUPERFAMILY SSF52821 160 282 1.7E-28 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_1095 c7a64cdc4670772369fef5aa57d5fd2b 283 Gene3D G3DSA:3.40.250.10 2 152 1.3E-46 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_1095 c7a64cdc4670772369fef5aa57d5fd2b 283 Gene3D G3DSA:3.40.250.10 160 283 2.3E-30 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily ALFP_1095 c7a64cdc4670772369fef5aa57d5fd2b 283 Pfam PF00581 Rhodanese-like domain 7 128 5.1E-21 T 12-10-2018 IPR001763 Rhodanese-like domain ALFP_1095 c7a64cdc4670772369fef5aa57d5fd2b 283 Pfam PF00581 Rhodanese-like domain 161 274 3.5E-7 T 12-10-2018 IPR001763 Rhodanese-like domain ALFP_3642 a65588234f5f88bae9a45e291a120e01 647 SUPERFAMILY SSF52096 10 297 1.33E-51 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_3642 a65588234f5f88bae9a45e291a120e01 647 SUPERFAMILY SSF51735 307 485 3.05E-45 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3642 a65588234f5f88bae9a45e291a120e01 647 Pfam PF00378 Enoyl-CoA hydratase/isomerase 32 226 1.0E-28 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 ALFP_3642 a65588234f5f88bae9a45e291a120e01 647 Gene3D G3DSA:3.90.226.10 7 304 5.0E-69 T 12-10-2018 ALFP_3642 a65588234f5f88bae9a45e291a120e01 647 Gene3D G3DSA:1.10.1040.50 488 647 3.8E-40 T 12-10-2018 ALFP_3642 a65588234f5f88bae9a45e291a120e01 647 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 310 483 2.1E-46 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 ALFP_3642 a65588234f5f88bae9a45e291a120e01 647 SUPERFAMILY SSF48179 485 584 2.55E-28 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_3642 a65588234f5f88bae9a45e291a120e01 647 Gene3D G3DSA:3.40.50.720 305 487 2.0E-52 T 12-10-2018 ALFP_3642 a65588234f5f88bae9a45e291a120e01 647 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 486 575 8.1E-24 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 ALFP_3532 b1308f814a738bd5a6e7a180a4407ce0 368 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2 368 2.8E-190 T 12-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 ALFP_3532 b1308f814a738bd5a6e7a180a4407ce0 368 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 ALFP_3532 b1308f814a738bd5a6e7a180a4407ce0 368 Gene3D G3DSA:3.40.50.720 174 311 3.2E-147 T 12-10-2018 ALFP_3532 b1308f814a738bd5a6e7a180a4407ce0 368 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 151 2.6E-23 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ALFP_3532 b1308f814a738bd5a6e7a180a4407ce0 368 SUPERFAMILY SSF51735 160 333 2.86E-45 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3532 b1308f814a738bd5a6e7a180a4407ce0 368 SUPERFAMILY SSF50129 318 368 2.59E-12 T 12-10-2018 IPR011032 GroES-like superfamily ALFP_3532 b1308f814a738bd5a6e7a180a4407ce0 368 Pfam PF00107 Zinc-binding dehydrogenase 197 315 7.6E-26 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 ALFP_3532 b1308f814a738bd5a6e7a180a4407ce0 368 SMART SM00829 12 366 8.0E-5 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 ALFP_3532 b1308f814a738bd5a6e7a180a4407ce0 368 SUPERFAMILY SSF50129 1 185 3.5E-71 T 12-10-2018 IPR011032 GroES-like superfamily ALFP_3532 b1308f814a738bd5a6e7a180a4407ce0 368 Gene3D G3DSA:3.90.180.10 6 363 3.2E-147 T 12-10-2018 ALFP_0102 047ab6f8081765490e24933e64d88535 304 SUPERFAMILY SSF161098 87 287 3.27E-24 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0102 047ab6f8081765490e24933e64d88535 304 Gene3D G3DSA:1.10.3720.10 82 301 1.6E-24 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0102 047ab6f8081765490e24933e64d88535 304 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 303 8.2E-27 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_3184 a7b37ebef9b6cda03371ed45369f05d0 63 Pfam PF11943 Protein of unknown function (DUF3460) 4 60 9.4E-24 T 12-10-2018 IPR021853 Protein of unknown function DUF3460 ALFP_3018 7bbd1b57487b90b3b35c9620963c6543 294 SUPERFAMILY SSF46785 3 108 1.36E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3018 7bbd1b57487b90b3b35c9620963c6543 294 Pfam PF03466 LysR substrate binding domain 90 282 4.4E-37 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_3018 7bbd1b57487b90b3b35c9620963c6543 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 2.9E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3018 7bbd1b57487b90b3b35c9620963c6543 294 SUPERFAMILY SSF53850 91 289 2.86E-35 T 12-10-2018 ALFP_3018 7bbd1b57487b90b3b35c9620963c6543 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.9E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3018 7bbd1b57487b90b3b35c9620963c6543 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.9E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3018 7bbd1b57487b90b3b35c9620963c6543 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.9E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3018 7bbd1b57487b90b3b35c9620963c6543 294 Gene3D G3DSA:1.10.10.10 1 80 1.0E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3018 7bbd1b57487b90b3b35c9620963c6543 294 Gene3D G3DSA:3.40.190.290 91 291 5.4E-36 T 12-10-2018 ALFP_3041 489afb57200530e5ff9398e12914d6de 228 SUPERFAMILY SSF101082 27 211 1.06E-34 T 12-10-2018 ALFP_3041 489afb57200530e5ff9398e12914d6de 228 Gene3D G3DSA:1.20.58.430 29 213 1.7E-44 T 12-10-2018 IPR023220 Type IV secretion system, VirB5-domain ALFP_3041 489afb57200530e5ff9398e12914d6de 228 Pfam PF07996 Type IV secretion system proteins 27 212 4.7E-37 T 12-10-2018 IPR014158 Type IV secretion system, VirB5 ALFP_0018 a212b698255d6204489d45676622b6dc 478 SUPERFAMILY SSF51905 6 341 1.38E-34 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0018 a212b698255d6204489d45676622b6dc 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 267 283 4.8E-12 T 12-10-2018 ALFP_0018 a212b698255d6204489d45676622b6dc 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 4.8E-12 T 12-10-2018 ALFP_0018 a212b698255d6204489d45676622b6dc 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 299 321 4.8E-12 T 12-10-2018 ALFP_0018 a212b698255d6204489d45676622b6dc 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 114 132 4.8E-12 T 12-10-2018 ALFP_0018 a212b698255d6204489d45676622b6dc 478 PIRSF PIRSF037495 1 478 4.1E-130 T 12-10-2018 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 ALFP_0018 a212b698255d6204489d45676622b6dc 478 Pfam PF04324 BFD-like [2Fe-2S] binding domain 394 447 2.5E-9 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain ALFP_0018 a212b698255d6204489d45676622b6dc 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.2E-13 T 12-10-2018 ALFP_0018 a212b698255d6204489d45676622b6dc 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 117 126 1.2E-13 T 12-10-2018 ALFP_0018 a212b698255d6204489d45676622b6dc 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 398 418 1.2E-13 T 12-10-2018 ALFP_0018 a212b698255d6204489d45676622b6dc 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 158 183 1.2E-13 T 12-10-2018 ALFP_0018 a212b698255d6204489d45676622b6dc 478 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 333 6.3E-18 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ALFP_2208 c62f1c98c7e9898d90b29130ee4fc611 458 Pfam PF01979 Amidohydrolase family 91 451 1.2E-60 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 ALFP_2208 c62f1c98c7e9898d90b29130ee4fc611 458 SUPERFAMILY SSF51556 94 396 5.21E-97 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_2208 c62f1c98c7e9898d90b29130ee4fc611 458 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 50 450 5.6E-176 T 12-10-2018 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 ALFP_2208 c62f1c98c7e9898d90b29130ee4fc611 458 Gene3D G3DSA:2.30.40.10 28 447 8.6E-174 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_2208 c62f1c98c7e9898d90b29130ee4fc611 458 SUPERFAMILY SSF51338 61 417 1.34E-10 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_2208 c62f1c98c7e9898d90b29130ee4fc611 458 Gene3D G3DSA:3.20.20.140 95 412 8.6E-174 T 12-10-2018 ALFP_1695 1583e5494600ae6c23e63510d93d3248 110 Pfam PF03891 Domain of unknown function (DUF333) 59 103 4.3E-14 T 12-10-2018 IPR005590 Protein of unknown function DUF333 ALFP_1937 c6bfa26a5f611f9d975d303874c48984 114 Pfam PF03960 ArsC family 5 113 2.3E-15 T 12-10-2018 IPR006660 Arsenate reductase-like ALFP_1937 c6bfa26a5f611f9d975d303874c48984 114 Gene3D G3DSA:3.40.30.10 1 114 5.8E-46 T 12-10-2018 ALFP_1937 c6bfa26a5f611f9d975d303874c48984 114 SUPERFAMILY SSF52833 3 114 1.09E-33 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_1937 c6bfa26a5f611f9d975d303874c48984 114 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 3 114 2.9E-45 T 12-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 ALFP_2541 4b9adcf8e2d5638edd0177745900d5f0 1095 Hamap MF_00970 Ribonuclease E [rne]. 1 1031 34.645 T 12-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 ALFP_2541 4b9adcf8e2d5638edd0177745900d5f0 1095 Gene3D G3DSA:2.40.50.140 31 124 9.1E-30 T 12-10-2018 ALFP_2541 4b9adcf8e2d5638edd0177745900d5f0 1095 Pfam PF00575 S1 RNA binding domain 36 117 9.3E-9 T 12-10-2018 IPR003029 S1 domain GO:0003676 ALFP_2541 4b9adcf8e2d5638edd0177745900d5f0 1095 Gene3D G3DSA:3.40.1260.20 399 509 2.7E-35 T 12-10-2018 ALFP_2541 4b9adcf8e2d5638edd0177745900d5f0 1095 Pfam PF10150 Ribonuclease E/G family 120 389 7.9E-92 T 12-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 ALFP_2541 4b9adcf8e2d5638edd0177745900d5f0 1095 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 423 2.6E-155 T 12-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 ALFP_2541 4b9adcf8e2d5638edd0177745900d5f0 1095 SMART SM00316 37 118 1.0E-7 T 12-10-2018 IPR022967 RNA-binding domain, S1 ALFP_2541 4b9adcf8e2d5638edd0177745900d5f0 1095 SUPERFAMILY SSF50249 39 124 3.81E-16 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_3191 492ec355eed5d4ecfe170127ed78f418 325 Pfam PF04773 FecR protein 113 204 2.2E-16 T 12-10-2018 IPR006860 FecR protein ALFP_3191 492ec355eed5d4ecfe170127ed78f418 325 Gene3D G3DSA:2.60.120.1440 108 244 2.5E-15 T 12-10-2018 ALFP_3191 492ec355eed5d4ecfe170127ed78f418 325 PIRSF PIRSF018266 1 321 6.3E-53 T 12-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component ALFP_3191 492ec355eed5d4ecfe170127ed78f418 325 Pfam PF16220 Domain of unknown function (DUF4880) 8 49 2.3E-10 T 12-10-2018 IPR032623 FecR, N-terminal ALFP_3288 54f207486ac348663ef2f50158d5df4c 354 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 339 9.8E-156 T 12-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 ALFP_3288 54f207486ac348663ef2f50158d5df4c 354 Gene3D G3DSA:3.40.50.720 2 325 9.4E-138 T 12-10-2018 ALFP_3288 54f207486ac348663ef2f50158d5df4c 354 SUPERFAMILY SSF51735 1 337 4.48E-96 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_3288 54f207486ac348663ef2f50158d5df4c 354 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 326 2.8E-98 T 12-10-2018 IPR016040 NAD(P)-binding domain ALFP_3288 54f207486ac348663ef2f50158d5df4c 354 Gene3D G3DSA:3.90.25.10 201 333 9.4E-138 T 12-10-2018 ALFP_1708 27d93dde9d4f4a85e02101c34f4c089b 119 SUPERFAMILY SSF74731 3 117 2.88E-48 T 12-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1708 27d93dde9d4f4a85e02101c34f4c089b 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 71 3.0E-20 T 12-10-2018 ALFP_1708 27d93dde9d4f4a85e02101c34f4c089b 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 2.7E-47 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1708 27d93dde9d4f4a85e02101c34f4c089b 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 3.8E-39 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1708 27d93dde9d4f4a85e02101c34f4c089b 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 3.8E-39 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1708 27d93dde9d4f4a85e02101c34f4c089b 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 3.8E-39 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1708 27d93dde9d4f4a85e02101c34f4c089b 119 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1708 27d93dde9d4f4a85e02101c34f4c089b 119 Gene3D G3DSA:1.10.720.90 2 55 3.6E-24 T 12-10-2018 ALFP_1708 27d93dde9d4f4a85e02101c34f4c089b 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 28.81 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1708 27d93dde9d4f4a85e02101c34f4c089b 119 Gene3D G3DSA:1.10.1900.20 56 119 9.6E-28 T 12-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1708 27d93dde9d4f4a85e02101c34f4c089b 119 Pfam PF00453 Ribosomal protein L20 3 108 4.3E-48 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_0088 4ceecba8708bd9b40276e0739c889539 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 5.2E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0088 4ceecba8708bd9b40276e0739c889539 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 5.2E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0088 4ceecba8708bd9b40276e0739c889539 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 5.2E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0088 4ceecba8708bd9b40276e0739c889539 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 5.2E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0088 4ceecba8708bd9b40276e0739c889539 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 5.2E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0088 4ceecba8708bd9b40276e0739c889539 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 5.2E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0088 4ceecba8708bd9b40276e0739c889539 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 244 8.0E-60 T 12-10-2018 ALFP_0088 4ceecba8708bd9b40276e0739c889539 260 SUPERFAMILY SSF51735 5 247 1.61E-67 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0088 4ceecba8708bd9b40276e0739c889539 260 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_0088 4ceecba8708bd9b40276e0739c889539 260 Gene3D G3DSA:3.40.50.720 1 250 9.2E-66 T 12-10-2018 ALFP_0088 4ceecba8708bd9b40276e0739c889539 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 6.0E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0088 4ceecba8708bd9b40276e0739c889539 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 6.0E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0088 4ceecba8708bd9b40276e0739c889539 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 6.0E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_0437 54bd45ac219ede524514f6c48628335a 356 SUPERFAMILY SSF56281 4 286 2.52E-15 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_3385 47609618bdb51936d021dc769ec027e5 262 PRINTS PR00164 ABC-2 type transport system membrane protein signature 66 88 9.1E-17 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 ALFP_3385 47609618bdb51936d021dc769ec027e5 262 PRINTS PR00164 ABC-2 type transport system membrane protein signature 143 167 9.1E-17 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 ALFP_3385 47609618bdb51936d021dc769ec027e5 262 PRINTS PR00164 ABC-2 type transport system membrane protein signature 180 199 9.1E-17 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 ALFP_3385 47609618bdb51936d021dc769ec027e5 262 PRINTS PR00164 ABC-2 type transport system membrane protein signature 35 56 9.1E-17 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 ALFP_3385 47609618bdb51936d021dc769ec027e5 262 PRINTS PR00164 ABC-2 type transport system membrane protein signature 200 219 9.1E-17 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 ALFP_3385 47609618bdb51936d021dc769ec027e5 262 Pfam PF01061 ABC-2 type transporter 16 221 1.2E-16 T 12-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 ALFP_2803 fe6badcc35c2d32edc1dcc1cc1542963 284 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 26 262 1.2E-53 T 12-10-2018 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related ALFP_2260 90b7ca375a6bc9b4f0c0b6e6967806ae 498 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 64 416 3.7E-76 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain ALFP_2260 90b7ca375a6bc9b4f0c0b6e6967806ae 498 SUPERFAMILY SSF53850 20 481 3.77E-105 T 12-10-2018 ALFP_2260 90b7ca375a6bc9b4f0c0b6e6967806ae 498 PIRSF PIRSF002741 13 498 1.6E-80 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 ALFP_2260 90b7ca375a6bc9b4f0c0b6e6967806ae 498 Gene3D G3DSA:3.10.105.10 268 478 6.5E-96 T 12-10-2018 ALFP_2260 90b7ca375a6bc9b4f0c0b6e6967806ae 498 Gene3D G3DSA:3.90.76.10 55 168 6.5E-96 T 12-10-2018 ALFP_2260 90b7ca375a6bc9b4f0c0b6e6967806ae 498 Gene3D G3DSA:3.40.190.10 32 267 6.5E-96 T 12-10-2018 ALFP_0458 6b1dd3be5fdc8cc98b1002eeef4fd8f0 1518 SUPERFAMILY SSF52540 349 490 6.82E-5 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0379 cdbdd6b008361d5c0049403bfd28dc61 209 Pfam PF03458 UPF0126 domain 95 167 4.9E-21 T 12-10-2018 IPR005115 Uncharacterised domain UPF0126 ALFP_0379 cdbdd6b008361d5c0049403bfd28dc61 209 Pfam PF03458 UPF0126 domain 9 83 5.0E-18 T 12-10-2018 IPR005115 Uncharacterised domain UPF0126 ALFP_3398 021ba4ab987e501d3048a6f4884f954c 440 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 2 440 9.3E-139 T 12-10-2018 IPR010263 Type VI secretion protein, VC_A0114 ALFP_3398 021ba4ab987e501d3048a6f4884f954c 440 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 16 438 1.3E-141 T 12-10-2018 IPR010263 Type VI secretion protein, VC_A0114 ALFP_0603 2e9a0ac0db6e65ce082fdf02834f32d3 341 Gene3D G3DSA:3.90.25.10 194 335 1.2E-112 T 12-10-2018 ALFP_0603 2e9a0ac0db6e65ce082fdf02834f32d3 341 PRINTS PR01713 Nucleotide sugar epimerase signature 234 249 1.1E-8 T 12-10-2018 ALFP_0603 2e9a0ac0db6e65ce082fdf02834f32d3 341 PRINTS PR01713 Nucleotide sugar epimerase signature 302 319 1.1E-8 T 12-10-2018 ALFP_0603 2e9a0ac0db6e65ce082fdf02834f32d3 341 PRINTS PR01713 Nucleotide sugar epimerase signature 45 61 1.1E-8 T 12-10-2018 ALFP_0603 2e9a0ac0db6e65ce082fdf02834f32d3 341 PRINTS PR01713 Nucleotide sugar epimerase signature 258 273 1.1E-8 T 12-10-2018 ALFP_0603 2e9a0ac0db6e65ce082fdf02834f32d3 341 Gene3D G3DSA:3.40.50.720 20 323 1.2E-112 T 12-10-2018 ALFP_0603 2e9a0ac0db6e65ce082fdf02834f32d3 341 SUPERFAMILY SSF51735 13 338 1.12E-83 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0603 2e9a0ac0db6e65ce082fdf02834f32d3 341 Pfam PF01370 NAD dependent epimerase/dehydratase family 19 264 1.2E-53 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 ALFP_1036 2c141ff45e5b3084ca60b791eab62e6c 137 Gene3D G3DSA:1.20.1300.10 3 134 1.4E-34 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1036 2c141ff45e5b3084ca60b791eab62e6c 137 PIRSF PIRSF000178 2 134 7.5E-27 T 12-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1036 2c141ff45e5b3084ca60b791eab62e6c 137 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 7 131 2.8E-36 T 12-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1036 2c141ff45e5b3084ca60b791eab62e6c 137 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 8 129 9.1E-28 T 12-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_1036 2c141ff45e5b3084ca60b791eab62e6c 137 SUPERFAMILY SSF81343 5 133 1.4E-26 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 ALFP_0187 e6a1f71c7222f084c0051f85501f8262 378 Pfam PF02405 Permease MlaE 161 371 6.8E-68 T 12-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 ALFP_0187 e6a1f71c7222f084c0051f85501f8262 378 Pfam PF13466 STAS domain 19 78 1.9E-7 T 12-10-2018 IPR002645 STAS domain ALFP_0187 e6a1f71c7222f084c0051f85501f8262 378 SUPERFAMILY SSF52091 16 72 6.08E-5 T 12-10-2018 IPR036513 STAS domain superfamily ALFP_0187 e6a1f71c7222f084c0051f85501f8262 378 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 127 373 5.8E-65 T 12-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria ALFP_0395 301f56fbe403edb2dd75c6daf4d02d4f 174 SUPERFAMILY SSF69118 1 172 7.98E-42 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 ALFP_0395 301f56fbe403edb2dd75c6daf4d02d4f 174 Gene3D G3DSA:1.20.1290.10 32 170 2.2E-46 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 ALFP_0395 301f56fbe403edb2dd75c6daf4d02d4f 174 Pfam PF02627 Carboxymuconolactone decarboxylase family 39 121 1.4E-12 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 ALFP_1544 dbb4667a369e7f33f044fe24d39729d4 154 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 63 118 5.0E-20 T 12-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 ALFP_1544 dbb4667a369e7f33f044fe24d39729d4 154 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 40 115 1.8E-32 T 12-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 ALFP_1544 dbb4667a369e7f33f044fe24d39729d4 154 Gene3D G3DSA:3.10.20.400 5 106 1.4E-35 T 12-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 ALFP_1544 dbb4667a369e7f33f044fe24d39729d4 154 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 14 119 28.251 T 12-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 ALFP_1544 dbb4667a369e7f33f044fe24d39729d4 154 SUPERFAMILY SSF141734 17 122 6.41E-42 T 12-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 ALFP_2960 849a1a9f1ad0e7e61607fca44805d00f 681 Pfam PF00593 TonB dependent receptor 256 680 1.4E-37 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_2960 849a1a9f1ad0e7e61607fca44805d00f 681 SUPERFAMILY SSF56935 59 681 4.12E-93 T 12-10-2018 ALFP_2960 849a1a9f1ad0e7e61607fca44805d00f 681 Gene3D G3DSA:2.40.170.20 172 681 9.0E-67 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_2960 849a1a9f1ad0e7e61607fca44805d00f 681 Gene3D G3DSA:2.170.130.10 61 171 1.4E-21 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_2960 849a1a9f1ad0e7e61607fca44805d00f 681 Pfam PF07715 TonB-dependent Receptor Plug Domain 60 163 6.6E-18 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_1387 daaf92be7a638e856d3770224558ec85 262 SUPERFAMILY SSF161098 6 252 6.92E-46 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1387 daaf92be7a638e856d3770224558ec85 262 Gene3D G3DSA:1.10.3720.10 8 261 1.9E-45 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1387 daaf92be7a638e856d3770224558ec85 262 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 254 3.2E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_3576 b03f804939249b53b0ec2d79314e549b 159 Gene3D G3DSA:3.30.450.150 1 145 4.9E-40 T 12-10-2018 IPR038084 GlcG-like domain superfamily ALFP_3576 b03f804939249b53b0ec2d79314e549b 159 SUPERFAMILY SSF143744 4 140 8.63E-34 T 12-10-2018 IPR038084 GlcG-like domain superfamily ALFP_3576 b03f804939249b53b0ec2d79314e549b 159 Pfam PF03928 Haem-degrading 8 137 1.1E-25 T 12-10-2018 IPR005624 Haem-degrading ALFP_2203 89b40137d6f05609e8e4263944220fd9 252 Pfam PF03746 LamB/YcsF family 5 242 2.8E-102 T 12-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 ALFP_2203 89b40137d6f05609e8e4263944220fd9 252 Gene3D G3DSA:3.20.20.370 3 252 8.5E-105 T 12-10-2018 ALFP_2203 89b40137d6f05609e8e4263944220fd9 252 SUPERFAMILY SSF88713 4 250 3.48E-100 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 ALFP_2203 89b40137d6f05609e8e4263944220fd9 252 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 3 247 45.74 T 12-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 ALFP_3168 21aeb7b1985800a3dc2dbc6113c0425e 267 SUPERFAMILY SSF56436 64 265 1.93E-28 T 12-10-2018 IPR016187 C-type lectin fold ALFP_3168 21aeb7b1985800a3dc2dbc6113c0425e 267 Gene3D G3DSA:3.90.1580.10 41 267 6.7E-20 T 12-10-2018 ALFP_3168 21aeb7b1985800a3dc2dbc6113c0425e 267 Pfam PF03781 Sulfatase-modifying factor enzyme 1 67 264 3.0E-31 T 12-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 ALFP_2395 0439dd1405da6d28980a1c84a36d36e3 292 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 19 284 7.0E-56 T 12-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 ALFP_2395 0439dd1405da6d28980a1c84a36d36e3 292 SUPERFAMILY SSF51197 16 292 7.33E-83 T 12-10-2018 ALFP_2395 0439dd1405da6d28980a1c84a36d36e3 292 Gene3D G3DSA:3.60.130.10 13 292 2.7E-80 T 12-10-2018 ALFP_3346 7429d658e32bf47caadf557af6baa34e 308 Hamap MF_00611 Protein FdhE [fdhE]. 2 307 33.638 T 12-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 ALFP_3346 7429d658e32bf47caadf557af6baa34e 308 SUPERFAMILY SSF144020 22 306 5.1E-80 T 12-10-2018 IPR024064 FdhE-like superfamily ALFP_3346 7429d658e32bf47caadf557af6baa34e 308 PIRSF PIRSF018296 1 308 1.3E-93 T 12-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 ALFP_3346 7429d658e32bf47caadf557af6baa34e 308 Gene3D G3DSA:3.90.1670.10 19 308 1.8E-93 T 12-10-2018 IPR024064 FdhE-like superfamily ALFP_3346 7429d658e32bf47caadf557af6baa34e 308 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 3 304 4.9E-88 T 12-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 ALFP_3346 7429d658e32bf47caadf557af6baa34e 308 Pfam PF04216 Protein involved in formate dehydrogenase formation 17 305 2.1E-104 T 12-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 ALFP_2359 2c0f07de34cc32d6e4056e4207c7fb19 495 Pfam PF02661 Fic/DOC family 322 409 5.5E-9 T 12-10-2018 IPR003812 Fido domain ALFP_2359 2c0f07de34cc32d6e4056e4207c7fb19 495 Gene3D G3DSA:1.10.3290.10 242 457 4.5E-23 T 12-10-2018 IPR036597 Fido-like domain superfamily ALFP_2359 2c0f07de34cc32d6e4056e4207c7fb19 495 SUPERFAMILY SSF140931 316 455 2.49E-19 T 12-10-2018 IPR036597 Fido-like domain superfamily ALFP_0623 ba87a18d89b56a23a33081ee3b32b0b9 273 Pfam PF02517 CAAX protease self-immunity 92 254 4.2E-9 T 12-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 ALFP_1181 334665f79bacb68fe5cf30e75d4f8970 111 Hamap MF_00725 Flagellar transcriptional regulator FlhD [flhD]. 6 109 24.479 T 12-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 ALFP_1181 334665f79bacb68fe5cf30e75d4f8970 111 Pfam PF05247 Flagellar transcriptional activator (FlhD) 8 105 1.1E-36 T 12-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 ALFP_1181 334665f79bacb68fe5cf30e75d4f8970 111 SUPERFAMILY SSF63592 7 102 1.2E-31 T 12-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily ALFP_1181 334665f79bacb68fe5cf30e75d4f8970 111 ProDom PD015582 ACTIVATOR TRANSCRIPTIONAL TRANSCRIPTION FLAGELLUM FLHD FLAGELLAR DNA-BINDING REGULATION REGULATOR PROBABLE 15 102 2.0E-27 T 12-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 ALFP_1181 334665f79bacb68fe5cf30e75d4f8970 111 Gene3D G3DSA:1.10.4000.10 6 110 2.5E-34 T 12-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily ALFP_2877 ebde73f891605b17320c5bc59295773c 233 Pfam PF02678 Pirin 10 118 4.4E-34 T 12-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 ALFP_2877 ebde73f891605b17320c5bc59295773c 233 SUPERFAMILY SSF51182 1 230 1.16E-70 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_2877 ebde73f891605b17320c5bc59295773c 233 Gene3D G3DSA:2.60.120.10 8 230 3.4E-78 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_2877 ebde73f891605b17320c5bc59295773c 233 Gene3D G3DSA:2.60.120.10 11 134 3.4E-78 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_2877 ebde73f891605b17320c5bc59295773c 233 PIRSF PIRSF006232 2 233 1.7E-49 T 12-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 ALFP_2982 ddd654bd958cdff9227e3b7c036800ae 441 Gene3D G3DSA:1.10.3860.10 1 409 4.5E-118 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 ALFP_2982 ddd654bd958cdff9227e3b7c036800ae 441 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 287 310 - T 12-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site ALFP_2982 ddd654bd958cdff9227e3b7c036800ae 441 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 28 43 - T 12-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site ALFP_2982 ddd654bd958cdff9227e3b7c036800ae 441 PRINTS PR00173 Glutamate-aspartate symporter signature 66 91 4.2E-29 T 12-10-2018 ALFP_2982 ddd654bd958cdff9227e3b7c036800ae 441 PRINTS PR00173 Glutamate-aspartate symporter signature 319 338 4.2E-29 T 12-10-2018 ALFP_2982 ddd654bd958cdff9227e3b7c036800ae 441 PRINTS PR00173 Glutamate-aspartate symporter signature 36 56 4.2E-29 T 12-10-2018 ALFP_2982 ddd654bd958cdff9227e3b7c036800ae 441 PRINTS PR00173 Glutamate-aspartate symporter signature 284 310 4.2E-29 T 12-10-2018 ALFP_2982 ddd654bd958cdff9227e3b7c036800ae 441 PRINTS PR00173 Glutamate-aspartate symporter signature 137 159 4.2E-29 T 12-10-2018 ALFP_2982 ddd654bd958cdff9227e3b7c036800ae 441 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 1 420 36.816 T 12-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 ALFP_2982 ddd654bd958cdff9227e3b7c036800ae 441 SUPERFAMILY SSF118215 1 394 5.75E-115 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 ALFP_2982 ddd654bd958cdff9227e3b7c036800ae 441 Pfam PF00375 Sodium:dicarboxylate symporter family 1 393 6.3E-105 T 12-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 ALFP_2906 d2d6c8ec25cf571b56a3b0b00908e3b2 138 Gene3D G3DSA:1.10.10.690 1 136 8.0E-26 T 12-10-2018 IPR027405 YidB-like ALFP_2906 d2d6c8ec25cf571b56a3b0b00908e3b2 138 Pfam PF06078 Bacterial protein of unknown function (DUF937) 4 110 2.1E-8 T 12-10-2018 IPR009282 Protein of unknown function DUF937 ALFP_2906 d2d6c8ec25cf571b56a3b0b00908e3b2 138 SUPERFAMILY SSF140804 20 128 4.18E-25 T 12-10-2018 IPR027405 YidB-like ALFP_0578 621290cc517e0d0303924247bf33e8d4 165 SUPERFAMILY SSF53597 3 164 3.02E-57 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 ALFP_0578 621290cc517e0d0303924247bf33e8d4 165 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 18 40 - T 12-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 ALFP_0578 621290cc517e0d0303924247bf33e8d4 165 Pfam PF00186 Dihydrofolate reductase 7 162 1.1E-55 T 12-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 ALFP_0578 621290cc517e0d0303924247bf33e8d4 165 PRINTS PR00070 Dihydrofolate reductase signature 45 56 2.6E-14 T 12-10-2018 ALFP_0578 621290cc517e0d0303924247bf33e8d4 165 PRINTS PR00070 Dihydrofolate reductase signature 32 40 2.6E-14 T 12-10-2018 ALFP_0578 621290cc517e0d0303924247bf33e8d4 165 PRINTS PR00070 Dihydrofolate reductase signature 96 110 2.6E-14 T 12-10-2018 ALFP_0578 621290cc517e0d0303924247bf33e8d4 165 PRINTS PR00070 Dihydrofolate reductase signature 18 28 2.6E-14 T 12-10-2018 ALFP_0578 621290cc517e0d0303924247bf33e8d4 165 Gene3D G3DSA:3.40.430.10 6 165 1.4E-57 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 ALFP_0578 621290cc517e0d0303924247bf33e8d4 165 PIRSF PIRSF000194 1 165 2.3E-59 T 12-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 ALFP_1980 8d12e095361822085b41aa83f175a258 162 Pfam PF02674 Colicin V production protein 4 143 2.8E-34 T 12-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 ALFP_3614 c3b812feaddc9242d33e590e63e11374 327 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 254 324 1.0E-34 T 12-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3614 c3b812feaddc9242d33e590e63e11374 327 SMART SM00662 20 230 7.2E-98 T 12-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3614 c3b812feaddc9242d33e590e63e11374 327 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 1 315 35.678 T 12-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3614 c3b812feaddc9242d33e590e63e11374 327 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 59 150 6.5E-24 T 12-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3614 c3b812feaddc9242d33e590e63e11374 327 SUPERFAMILY SSF55257 4 228 1.57E-32 T 12-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3614 c3b812feaddc9242d33e590e63e11374 327 SUPERFAMILY SSF56553 50 174 3.66E-42 T 12-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3614 c3b812feaddc9242d33e590e63e11374 327 SUPERFAMILY SSF47789 249 321 1.06E-26 T 12-10-2018 ALFP_3614 c3b812feaddc9242d33e590e63e11374 327 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 249 306 9.7E-25 T 12-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3614 c3b812feaddc9242d33e590e63e11374 327 Gene3D G3DSA:3.30.1360.10 15 223 1.2E-83 T 12-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3614 c3b812feaddc9242d33e590e63e11374 327 Gene3D G3DSA:1.10.150.20 243 326 1.3E-36 T 12-10-2018 ALFP_3614 c3b812feaddc9242d33e590e63e11374 327 Gene3D G3DSA:2.170.120.12 50 173 1.2E-83 T 12-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3614 c3b812feaddc9242d33e590e63e11374 327 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 26 223 7.2E-23 T 12-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_3614 c3b812feaddc9242d33e590e63e11374 327 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 21 314 1.4E-106 T 12-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ALFP_2347 31bf29cdab907d74e96de7004aef7d9c 208 Pfam PF01810 LysE type translocator 19 204 3.8E-39 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 ALFP_1234 f059349cdca16d5046472fc23bfd8bba 143 SUPERFAMILY SSF101116 17 132 2.75E-30 T 12-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 ALFP_1234 f059349cdca16d5046472fc23bfd8bba 143 PIRSF PIRSF039090 10 143 8.6E-33 T 12-10-2018 IPR003713 Flagellar protein FliS GO:0044780 ALFP_1234 f059349cdca16d5046472fc23bfd8bba 143 Gene3D G3DSA:1.20.120.340 10 136 4.7E-32 T 12-10-2018 ALFP_1234 f059349cdca16d5046472fc23bfd8bba 143 Pfam PF02561 Flagellar protein FliS 16 132 1.3E-30 T 12-10-2018 IPR003713 Flagellar protein FliS GO:0044780 ALFP_1234 f059349cdca16d5046472fc23bfd8bba 143 TIGRFAM TIGR00208 fliS: flagellar protein FliS 12 134 2.3E-30 T 12-10-2018 IPR003713 Flagellar protein FliS GO:0044780 ALFP_2228 940da011fa81b632b1698e2068eb5112 164 Gene3D G3DSA:1.10.260.40 9 105 3.1E-17 T 12-10-2018 ALFP_2228 940da011fa81b632b1698e2068eb5112 164 Pfam PF13413 Helix-turn-helix domain 23 82 3.4E-17 T 12-10-2018 ALFP_1218 ab3428db684717c234fd774346d3444d 89 Pfam PF01313 Bacterial export proteins, family 3 6 78 9.5E-29 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 ALFP_1218 ab3428db684717c234fd774346d3444d 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 85 3.3E-30 T 12-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 ALFP_1218 ab3428db684717c234fd774346d3444d 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.5E-20 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 ALFP_1218 ab3428db684717c234fd774346d3444d 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.5E-20 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 ALFP_1218 ab3428db684717c234fd774346d3444d 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.5E-20 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 ALFP_1218 ab3428db684717c234fd774346d3444d 89 PIRSF PIRSF004669 1 89 4.8E-31 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 ALFP_0893 b4fa7735366d723b774fd3b7e9c2c88a 441 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 356 376 - T 12-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 ALFP_0893 b4fa7735366d723b774fd3b7e9c2c88a 441 Pfam PF00860 Permease family 31 407 3.2E-87 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 ALFP_0893 b4fa7735366d723b774fd3b7e9c2c88a 441 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 29 431 5.8E-99 T 12-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 ALFP_2552 be29ec74c6f6ce994e009c45fe4f2864 230 Pfam PF00005 ABC transporter 21 162 5.1E-16 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2552 be29ec74c6f6ce994e009c45fe4f2864 230 Gene3D G3DSA:3.40.50.300 2 228 5.1E-37 T 12-10-2018 ALFP_2552 be29ec74c6f6ce994e009c45fe4f2864 230 SUPERFAMILY SSF52540 5 225 4.0E-38 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1591 dc71730f6ff78a0445fde7c297b04653 329 SUPERFAMILY SSF48208 1 326 2.64E-37 T 12-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 ALFP_1591 dc71730f6ff78a0445fde7c297b04653 329 Gene3D G3DSA:1.50.10.10 1 329 1.8E-37 T 12-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 ALFP_2641 c37c9a52b573e13fb0772c8e0943e502 162 Pfam PF07811 TadE-like protein 16 53 1.1E-7 T 12-10-2018 IPR012495 TadE-like ALFP_0432 b8485b3e2d0563cdf3796a3329d7155e 332 SUPERFAMILY SSF53850 126 294 2.85E-14 T 12-10-2018 ALFP_0432 b8485b3e2d0563cdf3796a3329d7155e 332 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 57 328 2.5E-78 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0432 b8485b3e2d0563cdf3796a3329d7155e 332 PIRSF PIRSF017082 1 332 2.7E-79 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0432 b8485b3e2d0563cdf3796a3329d7155e 332 Gene3D G3DSA:3.40.190.10 136 257 8.7E-108 T 12-10-2018 ALFP_0432 b8485b3e2d0563cdf3796a3329d7155e 332 Gene3D G3DSA:3.40.190.150 38 322 8.7E-108 T 12-10-2018 ALFP_0323 35bf387ecbb4cc8bd74e13b62aa13538 306 Gene3D G3DSA:1.10.10.10 6 93 1.3E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0323 35bf387ecbb4cc8bd74e13b62aa13538 306 Gene3D G3DSA:3.40.190.10 97 297 3.8E-58 T 12-10-2018 ALFP_0323 35bf387ecbb4cc8bd74e13b62aa13538 306 SUPERFAMILY SSF53850 95 302 1.26E-42 T 12-10-2018 ALFP_0323 35bf387ecbb4cc8bd74e13b62aa13538 306 Pfam PF03466 LysR substrate binding domain 103 301 3.5E-22 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0323 35bf387ecbb4cc8bd74e13b62aa13538 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 69 1.6E-13 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0323 35bf387ecbb4cc8bd74e13b62aa13538 306 Gene3D G3DSA:3.40.190.10 176 274 3.8E-58 T 12-10-2018 ALFP_0323 35bf387ecbb4cc8bd74e13b62aa13538 306 SUPERFAMILY SSF46785 9 89 1.33E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3076 ec14d5a98734cbad77dc3bd37fd11baf 367 Gene3D G3DSA:3.40.190.10 154 324 1.2E-121 T 12-10-2018 ALFP_3076 ec14d5a98734cbad77dc3bd37fd11baf 367 PIRSF PIRSF039026 1 357 3.1E-125 T 12-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like ALFP_3076 ec14d5a98734cbad77dc3bd37fd11baf 367 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 43 324 3.9E-58 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_3076 ec14d5a98734cbad77dc3bd37fd11baf 367 Gene3D G3DSA:3.40.190.170 34 338 1.2E-121 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_2264 079ff4e7d7fb64415cbb8e4047b3b4ef 1195 Pfam PF13502 AsmA-like C-terminal region 926 1173 1.5E-38 T 12-10-2018 IPR032712 AsmA-like, C-terminal ALFP_2264 079ff4e7d7fb64415cbb8e4047b3b4ef 1195 Pfam PF13116 Protein of unknown function 402 689 1.6E-43 T 12-10-2018 IPR025263 Domain of unknown function DUF3971 ALFP_2264 079ff4e7d7fb64415cbb8e4047b3b4ef 1195 Pfam PF05170 AsmA family 5 165 1.2E-12 T 12-10-2018 IPR007844 AsmA ALFP_0550 12b64705c43b86e3093ff29dd4ac587f 345 Gene3D G3DSA:3.20.20.410 39 342 2.2E-30 T 12-10-2018 IPR036520 UPF0759 superfamily ALFP_0550 12b64705c43b86e3093ff29dd4ac587f 345 Pfam PF01904 Protein of unknown function DUF72 70 338 8.3E-39 T 12-10-2018 IPR002763 Protein of unknown function DUF72 ALFP_0550 12b64705c43b86e3093ff29dd4ac587f 345 SUPERFAMILY SSF117396 49 340 1.44E-45 T 12-10-2018 IPR036520 UPF0759 superfamily ALFP_1953 9238d010c84a169966bf501d8cb12d24 436 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 338 3.2E-51 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ALFP_1953 9238d010c84a169966bf501d8cb12d24 436 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 1.8E-14 T 12-10-2018 ALFP_1953 9238d010c84a169966bf501d8cb12d24 436 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 113 131 1.8E-14 T 12-10-2018 ALFP_1953 9238d010c84a169966bf501d8cb12d24 436 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 294 316 1.8E-14 T 12-10-2018 ALFP_1953 9238d010c84a169966bf501d8cb12d24 436 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.8E-14 T 12-10-2018 ALFP_1953 9238d010c84a169966bf501d8cb12d24 436 SUPERFAMILY SSF51905 2 345 9.72E-29 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1953 9238d010c84a169966bf501d8cb12d24 436 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 309 316 2.2E-8 T 12-10-2018 ALFP_1953 9238d010c84a169966bf501d8cb12d24 436 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 2.2E-8 T 12-10-2018 ALFP_1953 9238d010c84a169966bf501d8cb12d24 436 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 2.2E-8 T 12-10-2018 ALFP_1953 9238d010c84a169966bf501d8cb12d24 436 Gene3D G3DSA:3.50.50.100 5 418 3.4E-102 T 12-10-2018 ALFP_0938 7f7b515b7396c2a3419f2936e668b186 398 PRINTS PR00359 B-class P450 signature 151 166 3.7E-6 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ALFP_0938 7f7b515b7396c2a3419f2936e668b186 398 PRINTS PR00359 B-class P450 signature 85 96 3.7E-6 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ALFP_0938 7f7b515b7396c2a3419f2936e668b186 398 PRINTS PR00359 B-class P450 signature 134 150 3.7E-6 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ALFP_0938 7f7b515b7396c2a3419f2936e668b186 398 Gene3D G3DSA:1.10.630.10 2 398 1.3E-88 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 ALFP_0938 7f7b515b7396c2a3419f2936e668b186 398 SUPERFAMILY SSF48264 6 393 3.8E-59 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 ALFP_0938 7f7b515b7396c2a3419f2936e668b186 398 Pfam PF00067 Cytochrome P450 270 364 2.5E-13 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 ALFP_1535 fae1723d3c19cea1a60a070804c8cf9d 121 SUPERFAMILY SSF54593 6 120 3.58E-21 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_1535 fae1723d3c19cea1a60a070804c8cf9d 121 Gene3D G3DSA:3.30.720.120 1 54 1.1E-21 T 12-10-2018 ALFP_1535 fae1723d3c19cea1a60a070804c8cf9d 121 PIRSF PIRSF039020 1 121 1.7E-46 T 12-10-2018 IPR026275 Glyoxalase/dioxygenase/EhpR ALFP_1535 fae1723d3c19cea1a60a070804c8cf9d 121 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 115 9.1E-7 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain ALFP_1535 fae1723d3c19cea1a60a070804c8cf9d 121 Gene3D G3DSA:3.30.720.110 66 121 9.9E-25 T 12-10-2018 ALFP_3442 0df8a070ab42350fdd4dc21abda080e6 258 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 6 257 3.5E-58 T 12-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 ALFP_3442 0df8a070ab42350fdd4dc21abda080e6 258 SUPERFAMILY SSF102705 6 257 1.19E-73 T 12-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily ALFP_3442 0df8a070ab42350fdd4dc21abda080e6 258 Gene3D G3DSA:3.40.1390.30 17 243 3.8E-75 T 12-10-2018 ALFP_3442 0df8a070ab42350fdd4dc21abda080e6 258 Gene3D G3DSA:3.40.1390.30 100 229 3.8E-75 T 12-10-2018 ALFP_3442 0df8a070ab42350fdd4dc21abda080e6 258 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 9 245 1.1E-54 T 12-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 ALFP_2968 08b3f39c402670f42213b8764399d53d 147 Pfam PF00075 RNase H 5 141 1.1E-48 T 12-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 ALFP_2968 08b3f39c402670f42213b8764399d53d 147 Hamap MF_00042 Ribonuclease H [rnhA]. 2 147 32.312 T 12-10-2018 IPR022892 Ribonuclease HI GO:0004523 ALFP_2968 08b3f39c402670f42213b8764399d53d 147 Gene3D G3DSA:3.30.420.10 2 146 2.8E-59 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 ALFP_2968 08b3f39c402670f42213b8764399d53d 147 SUPERFAMILY SSF53098 3 142 1.39E-57 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily ALFP_2332 d6c9f5ebd4507aaaa245f9e2ea28057f 671 Gene3D G3DSA:2.40.170.20 171 671 1.6E-143 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_2332 d6c9f5ebd4507aaaa245f9e2ea28057f 671 Gene3D G3DSA:2.170.130.10 36 165 2.4E-40 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_2332 d6c9f5ebd4507aaaa245f9e2ea28057f 671 Pfam PF07715 TonB-dependent Receptor Plug Domain 50 160 2.9E-27 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_2332 d6c9f5ebd4507aaaa245f9e2ea28057f 671 SUPERFAMILY SSF56935 29 671 1.54E-127 T 12-10-2018 ALFP_2332 d6c9f5ebd4507aaaa245f9e2ea28057f 671 Pfam PF00593 TonB dependent receptor 219 669 1.2E-61 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_1539 f66a2d8718d7bf484cfc03502e70d35e 316 Pfam PF02649 Type I GTP cyclohydrolase folE2 21 296 1.2E-65 T 12-10-2018 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 ALFP_1539 f66a2d8718d7bf484cfc03502e70d35e 316 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 8 301 32.092 T 12-10-2018 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 ALFP_0471 43897ffc1744200e5551cff6da705821 728 Pfam PF09848 Uncharacterized conserved protein (DUF2075) 185 550 1.7E-63 T 12-10-2018 IPR018647 Domain of unknown function DUF2075 ALFP_0471 43897ffc1744200e5551cff6da705821 728 Gene3D G3DSA:2.10.109.10 591 728 6.4E-7 T 12-10-2018 ALFP_0471 43897ffc1744200e5551cff6da705821 728 SUPERFAMILY SSF51306 584 680 5.23E-8 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily ALFP_0471 43897ffc1744200e5551cff6da705821 728 SUPERFAMILY SSF52540 158 370 8.17E-12 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0471 43897ffc1744200e5551cff6da705821 728 Gene3D G3DSA:3.40.50.300 165 313 1.5E-6 T 12-10-2018 ALFP_1420 5c808339e5ceb11dde32f845a32454cb 500 Pfam PF02470 MlaD protein 251 357 8.2E-11 T 12-10-2018 IPR003399 Mce/MlaD ALFP_1420 5c808339e5ceb11dde32f845a32454cb 500 Pfam PF02470 MlaD protein 4 95 9.7E-11 T 12-10-2018 IPR003399 Mce/MlaD ALFP_1420 5c808339e5ceb11dde32f845a32454cb 500 Pfam PF02470 MlaD protein 123 183 2.7E-9 T 12-10-2018 IPR003399 Mce/MlaD ALFP_2847 38a6f419afd80fcb010adf8b407713e9 228 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 107 224 7.3E-27 T 12-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal ALFP_2847 38a6f419afd80fcb010adf8b407713e9 228 Gene3D G3DSA:1.25.40.10 107 228 5.2E-23 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2847 38a6f419afd80fcb010adf8b407713e9 228 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 7 227 16.823 T 12-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 ALFP_2847 38a6f419afd80fcb010adf8b407713e9 228 SUPERFAMILY SSF48452 108 223 1.29E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_2847 38a6f419afd80fcb010adf8b407713e9 228 Pfam PF13525 Outer membrane lipoprotein 105 227 7.9E-9 T 12-10-2018 IPR039565 Outer membrane lipoprotein BamD-like ALFP_2823 a91d88539c94fa071ad1639ec0adfb31 368 Pfam PF04143 Sulphur transport 45 358 4.2E-55 T 12-10-2018 IPR007272 Sulphur transport domain ALFP_3499 222898cff26cd7fa6ca6ca5b6817fdfc 103 Pfam PF04972 BON domain 33 101 2.5E-20 T 12-10-2018 IPR007055 BON domain ALFP_3499 222898cff26cd7fa6ca6ca5b6817fdfc 103 SMART SM00749 38 101 5.2E-7 T 12-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria ALFP_0216 7fb0bde631a6fc654f9791c63f751881 237 SUPERFAMILY SSF161098 16 214 1.05E-39 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0216 7fb0bde631a6fc654f9791c63f751881 237 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 16 124 3.7E-16 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 ALFP_0216 7fb0bde631a6fc654f9791c63f751881 237 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 222 3.3E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0216 7fb0bde631a6fc654f9791c63f751881 237 Gene3D G3DSA:1.10.3720.10 11 232 1.5E-45 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2155 50315070156dc29dfbc76ffe69c470e1 386 Gene3D G3DSA:2.140.10.20 16 383 8.8E-54 T 12-10-2018 IPR003143 Cytochrome cd1-nitrite reductase, C-terminal domain superfamily ALFP_2155 50315070156dc29dfbc76ffe69c470e1 386 SUPERFAMILY SSF51004 24 381 3.27E-72 T 12-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily ALFP_2155 50315070156dc29dfbc76ffe69c470e1 386 Pfam PF02239 Cytochrome D1 heme domain 22 380 3.5E-105 T 12-10-2018 ALFP_2270 0fae8d1176ab522aacb2df15d19ccf63 67 Pfam PF05751 FixH 12 48 2.7E-5 T 12-10-2018 IPR008620 Nitrogen fixation protein FixH ALFP_1644 3a85efb696dcb55091a57787e535d8a5 139 SMART SM00749 74 137 3.0E-8 T 12-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria ALFP_1644 3a85efb696dcb55091a57787e535d8a5 139 Pfam PF04972 BON domain 70 137 1.0E-15 T 12-10-2018 IPR007055 BON domain ALFP_0803 3c22cc06366f66b0d6c34acc9c1ce940 291 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 138 3.4E-8 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 ALFP_0803 3c22cc06366f66b0d6c34acc9c1ce940 291 Gene3D G3DSA:3.40.50.720 3 168 5.2E-26 T 12-10-2018 ALFP_0803 3c22cc06366f66b0d6c34acc9c1ce940 291 SUPERFAMILY SSF48179 162 262 3.74E-16 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 ALFP_0803 3c22cc06366f66b0d6c34acc9c1ce940 291 Pfam PF09130 Domain of unknown function (DUF1932) 189 257 1.3E-6 T 12-10-2018 IPR015814 Phosphogluconate dehydrogenase, NAD-binding, putative, C-terminal ALFP_0803 3c22cc06366f66b0d6c34acc9c1ce940 291 SUPERFAMILY SSF51735 3 145 3.57E-19 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0803 3c22cc06366f66b0d6c34acc9c1ce940 291 Gene3D G3DSA:1.10.1040.10 169 271 3.0E-20 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ALFP_0582 1073e7665f9c54302c4b909f2a413c16 196 SUPERFAMILY SSF46626 17 184 6.84E-21 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0582 1073e7665f9c54302c4b909f2a413c16 196 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 13 149 3.6E-35 T 12-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO ALFP_0582 1073e7665f9c54302c4b909f2a413c16 196 Gene3D G3DSA:1.10.760.10 34 188 3.1E-45 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0298 9d6f5264aa85f5f69d0909a4a7a27cf5 153 Pfam PF12802 MarR family 41 98 5.7E-11 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0298 9d6f5264aa85f5f69d0909a4a7a27cf5 153 SUPERFAMILY SSF46785 14 149 1.92E-31 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0298 9d6f5264aa85f5f69d0909a4a7a27cf5 153 SMART SM00347 34 134 2.7E-19 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0298 9d6f5264aa85f5f69d0909a4a7a27cf5 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 90 1.5E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0298 9d6f5264aa85f5f69d0909a4a7a27cf5 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 124 144 1.5E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0298 9d6f5264aa85f5f69d0909a4a7a27cf5 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 94 110 1.5E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0298 9d6f5264aa85f5f69d0909a4a7a27cf5 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 58 74 1.5E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0298 9d6f5264aa85f5f69d0909a4a7a27cf5 153 Gene3D G3DSA:1.10.10.10 5 149 7.2E-36 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1831 1cd7902b3147d0fc85fc0ecea261f8e8 245 SUPERFAMILY SSF52540 48 172 1.5E-14 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1831 1cd7902b3147d0fc85fc0ecea261f8e8 245 Gene3D G3DSA:3.40.50.300 49 171 7.0E-29 T 12-10-2018 ALFP_1831 1cd7902b3147d0fc85fc0ecea261f8e8 245 PIRSF PIRSF037290 3 242 8.6E-48 T 12-10-2018 IPR017166 Uncharacterised conserved protein UCP037290 ALFP_2892 16dcb48e0323d7f012132a59430e007c 173 SUPERFAMILY SSF101307 20 168 1.14E-34 T 12-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 ALFP_2892 16dcb48e0323d7f012132a59430e007c 173 Pfam PF04608 Phosphatidylglycerophosphatase A 26 166 8.3E-45 T 12-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 ALFP_2892 16dcb48e0323d7f012132a59430e007c 173 PIRSF PIRSF006162 15 172 4.7E-38 T 12-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 ALFP_0481 c41b8d9b8a9e5d24db318697a1da5716 151 Gene3D G3DSA:1.10.10.10 1 135 4.6E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0481 c41b8d9b8a9e5d24db318697a1da5716 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 80 96 1.2E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0481 c41b8d9b8a9e5d24db318697a1da5716 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 110 130 1.2E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0481 c41b8d9b8a9e5d24db318697a1da5716 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 61 76 1.2E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0481 c41b8d9b8a9e5d24db318697a1da5716 151 SMART SM00347 22 120 3.1E-13 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0481 c41b8d9b8a9e5d24db318697a1da5716 151 Pfam PF01047 MarR family 27 85 2.8E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0481 c41b8d9b8a9e5d24db318697a1da5716 151 SUPERFAMILY SSF46785 3 132 3.38E-27 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3137 b60ea5eedd851d911fca964dfa539cd5 258 SUPERFAMILY SSF46894 149 247 1.3E-9 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ALFP_3137 b60ea5eedd851d911fca964dfa539cd5 258 Gene3D G3DSA:1.10.10.10 147 252 7.3E-11 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3137 b60ea5eedd851d911fca964dfa539cd5 258 SMART SM00862 163 245 3.9E-4 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_3137 b60ea5eedd851d911fca964dfa539cd5 258 SUPERFAMILY SSF52172 18 136 2.49E-5 T 12-10-2018 IPR011006 CheY-like superfamily ALFP_3137 b60ea5eedd851d911fca964dfa539cd5 258 Pfam PF00486 Transcriptional regulatory protein, C terminal 167 245 2.3E-5 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ALFP_0898 7349416f4eea6b9ae44fb29ccc691aad 280 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 54 67 - T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_0898 7349416f4eea6b9ae44fb29ccc691aad 280 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 20 273 2.8E-100 T 12-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 ALFP_0898 7349416f4eea6b9ae44fb29ccc691aad 280 Pfam PF00809 Pterin binding enzyme 21 259 3.1E-86 T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_0898 7349416f4eea6b9ae44fb29ccc691aad 280 Gene3D G3DSA:3.20.20.20 2 277 2.5E-110 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_0898 7349416f4eea6b9ae44fb29ccc691aad 280 SUPERFAMILY SSF51717 8 274 1.7E-103 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_3241 1fd4bf7735b57515fc9793ee44833c99 322 Gene3D G3DSA:3.40.1010.10 26 147 5.5E-39 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 ALFP_3241 1fd4bf7735b57515fc9793ee44833c99 322 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 118 129 - T 12-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 ALFP_3241 1fd4bf7735b57515fc9793ee44833c99 322 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 40 264 33.343 T 12-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 ALFP_3241 1fd4bf7735b57515fc9793ee44833c99 322 Gene3D G3DSA:3.30.950.10 148 270 2.0E-33 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 ALFP_3241 1fd4bf7735b57515fc9793ee44833c99 322 SUPERFAMILY SSF53790 40 262 4.58E-71 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 ALFP_3241 1fd4bf7735b57515fc9793ee44833c99 322 PIRSF PIRSF005917 28 321 1.8E-88 T 12-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 ALFP_3241 1fd4bf7735b57515fc9793ee44833c99 322 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 41 316 1.5E-70 T 12-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 ALFP_3241 1fd4bf7735b57515fc9793ee44833c99 322 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 41 243 6.1E-27 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 ALFP_1016 c4b2c8e683d2ae590c656e85fb4ff6fd 191 Gene3D G3DSA:3.30.450.40 1 153 3.8E-48 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_1016 c4b2c8e683d2ae590c656e85fb4ff6fd 191 SUPERFAMILY SSF55781 12 152 2.1E-7 T 12-10-2018 ALFP_1016 c4b2c8e683d2ae590c656e85fb4ff6fd 191 Pfam PF01590 GAF domain 22 150 2.2E-9 T 12-10-2018 IPR003018 GAF domain GO:0005515 ALFP_1562 dc6fd80f3c07ece0c9cdb2bd1d1e0f83 310 SUPERFAMILY SSF51412 12 306 2.9E-54 T 12-10-2018 ALFP_1562 dc6fd80f3c07ece0c9cdb2bd1d1e0f83 310 Gene3D G3DSA:3.20.20.70 11 309 1.3E-83 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_1562 dc6fd80f3c07ece0c9cdb2bd1d1e0f83 310 Pfam PF03060 Nitronate monooxygenase 13 79 1.5E-14 T 12-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 ALFP_1562 dc6fd80f3c07ece0c9cdb2bd1d1e0f83 310 Pfam PF03060 Nitronate monooxygenase 88 255 4.8E-38 T 12-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 ALFP_0326 72a72d0a59b0e7c7a9d84d3fce600218 192 SUPERFAMILY SSF81301 29 187 2.35E-43 T 12-10-2018 ALFP_0326 72a72d0a59b0e7c7a9d84d3fce600218 192 Gene3D G3DSA:3.30.460.10 23 189 1.7E-45 T 12-10-2018 ALFP_0326 72a72d0a59b0e7c7a9d84d3fce600218 192 Pfam PF04229 GrpB protein 27 184 1.9E-48 T 12-10-2018 IPR007344 GrpB/Dephospho-CoA kinase ALFP_2282 a51a76b6e025135495f55b48c515a21a 190 Gene3D G3DSA:1.20.120.1760 5 188 3.7E-12 T 12-10-2018 ALFP_2282 a51a76b6e025135495f55b48c515a21a 190 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3 187 5.4E-55 T 12-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 ALFP_2282 a51a76b6e025135495f55b48c515a21a 190 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 76 2.9E-17 T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 ALFP_2282 a51a76b6e025135495f55b48c515a21a 190 PIRSF PIRSF000847 1 190 1.1E-46 T 12-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 ALFP_2282 a51a76b6e025135495f55b48c515a21a 190 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 54 76 - T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 ALFP_2325 c455c943f0aa12d74297118b662ea170 198 Gene3D G3DSA:3.30.1330.60 71 198 1.4E-45 T 12-10-2018 IPR036737 OmpA-like domain superfamily ALFP_2325 c455c943f0aa12d74297118b662ea170 198 SUPERFAMILY SSF103088 68 193 3.27E-41 T 12-10-2018 IPR036737 OmpA-like domain superfamily ALFP_2325 c455c943f0aa12d74297118b662ea170 198 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 176 196 3.6E-9 T 12-10-2018 ALFP_2325 c455c943f0aa12d74297118b662ea170 198 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 138 155 3.6E-9 T 12-10-2018 ALFP_2325 c455c943f0aa12d74297118b662ea170 198 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 156 175 3.6E-9 T 12-10-2018 ALFP_2325 c455c943f0aa12d74297118b662ea170 198 PRINTS PR01021 OMPA domain signature 93 115 2.9E-22 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 ALFP_2325 c455c943f0aa12d74297118b662ea170 198 PRINTS PR01021 OMPA domain signature 123 138 2.9E-22 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 ALFP_2325 c455c943f0aa12d74297118b662ea170 198 PRINTS PR01021 OMPA domain signature 138 154 2.9E-22 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 ALFP_2325 c455c943f0aa12d74297118b662ea170 198 Pfam PF00691 OmpA family 92 187 4.7E-27 T 12-10-2018 IPR006665 OmpA-like domain ALFP_0247 aae1a967ba6ef6bbf7967c447fa11ecb 276 Gene3D G3DSA:3.90.550.10 1 275 1.4E-82 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_0247 aae1a967ba6ef6bbf7967c447fa11ecb 276 Pfam PF00483 Nucleotidyl transferase 11 266 5.0E-26 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 ALFP_0247 aae1a967ba6ef6bbf7967c447fa11ecb 276 SUPERFAMILY SSF53448 2 269 3.25E-62 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases ALFP_0247 aae1a967ba6ef6bbf7967c447fa11ecb 276 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 4 265 3.2E-110 T 12-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 ALFP_1167 6d585ed9605e6bf01f60d64d13e596db 288 Pfam PF00753 Metallo-beta-lactamase superfamily 12 206 3.0E-18 T 12-10-2018 IPR001279 Metallo-beta-lactamase ALFP_1167 6d585ed9605e6bf01f60d64d13e596db 288 SUPERFAMILY SSF56281 11 286 3.11E-46 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_1167 6d585ed9605e6bf01f60d64d13e596db 288 SMART SM00849 15 206 1.4E-23 T 12-10-2018 IPR001279 Metallo-beta-lactamase ALFP_1167 6d585ed9605e6bf01f60d64d13e596db 288 Gene3D G3DSA:3.60.15.10 2 288 4.1E-107 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_1368 18d5c6984bdd5925fdac8cdfe238e621 121 SUPERFAMILY SSF101756 17 119 3.53E-23 T 12-10-2018 IPR036700 Bacterial OB-fold superfamily ALFP_1368 18d5c6984bdd5925fdac8cdfe238e621 121 Pfam PF04076 Bacterial OB fold (BOF) protein 28 117 3.8E-17 T 12-10-2018 IPR005220 Bacterial OB-fold ALFP_1368 18d5c6984bdd5925fdac8cdfe238e621 121 Gene3D G3DSA:2.40.50.200 17 121 3.5E-24 T 12-10-2018 IPR036700 Bacterial OB-fold superfamily ALFP_1853 7bfe7281873305fc61a6b30802103970 399 Gene3D G3DSA:2.60.120.580 12 130 5.5E-19 T 12-10-2018 ALFP_1853 7bfe7281873305fc61a6b30802103970 399 Gene3D G3DSA:2.60.120.580 189 272 1.5E-20 T 12-10-2018 ALFP_1853 7bfe7281873305fc61a6b30802103970 399 SUPERFAMILY SSF141130 16 374 2.35E-75 T 12-10-2018 ALFP_1853 7bfe7281873305fc61a6b30802103970 399 Pfam PF03069 Acetamidase/Formamidase family 8 374 5.9E-152 T 12-10-2018 IPR004304 Acetamidase/Formamidase GO:0016811 ALFP_1431 7bb4d0437a37040a2d5b484035a167a7 214 Gene3D G3DSA:3.40.50.880 3 210 1.8E-64 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_1431 7bb4d0437a37040a2d5b484035a167a7 214 Pfam PF01965 DJ-1/PfpI family 21 184 1.8E-25 T 12-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 ALFP_1431 7bb4d0437a37040a2d5b484035a167a7 214 SUPERFAMILY SSF52317 20 203 1.36E-47 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like ALFP_0831 37f6b9f573028af93c123387e1cbb863 255 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 96 116 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 ALFP_0831 37f6b9f573028af93c123387e1cbb863 255 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 254 2.5E-58 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 ALFP_0831 37f6b9f573028af93c123387e1cbb863 255 SUPERFAMILY SSF52096 1 254 4.21E-80 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_0831 37f6b9f573028af93c123387e1cbb863 255 Gene3D G3DSA:3.90.226.10 1 197 1.3E-70 T 12-10-2018 ALFP_0831 37f6b9f573028af93c123387e1cbb863 255 Gene3D G3DSA:1.10.12.10 198 255 8.1E-22 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal ALFP_1488 d6cd6712c772989e7745316a65895a78 334 PIRSF PIRSF017082 3 333 5.4E-68 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_1488 d6cd6712c772989e7745316a65895a78 334 Gene3D G3DSA:3.40.190.150 39 324 2.1E-88 T 12-10-2018 ALFP_1488 d6cd6712c772989e7745316a65895a78 334 SUPERFAMILY SSF53850 126 294 3.1E-10 T 12-10-2018 ALFP_1488 d6cd6712c772989e7745316a65895a78 334 Gene3D G3DSA:3.40.190.10 135 259 2.1E-88 T 12-10-2018 ALFP_1488 d6cd6712c772989e7745316a65895a78 334 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 58 318 3.7E-58 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0606 e44cb617a03e6c3e97b6c556db32fd34 375 Pfam PF13439 Glycosyltransferase Family 4 12 170 3.1E-11 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 ALFP_0606 e44cb617a03e6c3e97b6c556db32fd34 375 Gene3D G3DSA:3.40.50.2000 171 349 2.5E-57 T 12-10-2018 ALFP_0606 e44cb617a03e6c3e97b6c556db32fd34 375 Gene3D G3DSA:3.40.50.2000 13 358 2.5E-57 T 12-10-2018 ALFP_0606 e44cb617a03e6c3e97b6c556db32fd34 375 SUPERFAMILY SSF53756 2 363 7.46E-66 T 12-10-2018 ALFP_0606 e44cb617a03e6c3e97b6c556db32fd34 375 Pfam PF00534 Glycosyl transferases group 1 188 340 1.3E-29 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 ALFP_2828 f8571fdd35d75f4983b8733db47ca3e1 265 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 253 3.0E-83 T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 ALFP_2828 f8571fdd35d75f4983b8733db47ca3e1 265 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 258 20.249 T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 ALFP_2828 f8571fdd35d75f4983b8733db47ca3e1 265 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 4 257 2.8E-83 T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 ALFP_2828 f8571fdd35d75f4983b8733db47ca3e1 265 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 138 150 - T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 ALFP_0937 22f89de0d7b3d93187b411df64c2abc2 388 Gene3D G3DSA:3.40.640.10 58 286 6.7E-117 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_0937 22f89de0d7b3d93187b411df64c2abc2 388 SUPERFAMILY SSF53383 3 385 4.92E-94 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_0937 22f89de0d7b3d93187b411df64c2abc2 388 Gene3D G3DSA:3.90.1150.10 42 377 6.7E-117 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_0937 22f89de0d7b3d93187b411df64c2abc2 388 Pfam PF00155 Aminotransferase class I and II 42 380 7.6E-49 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_1861 c61cb685cf1722bcf97954fbfc8a85e9 287 Gene3D G3DSA:3.40.50.1820 26 276 5.3E-61 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1861 c61cb685cf1722bcf97954fbfc8a85e9 287 Pfam PF07859 alpha/beta hydrolase fold 72 189 1.5E-20 T 12-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 ALFP_1861 c61cb685cf1722bcf97954fbfc8a85e9 287 SUPERFAMILY SSF53474 13 263 3.95E-48 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1878 7d8e79bef3f1560ff538b04ea2a1d3ff 554 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 69 263 1.9E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_1878 7d8e79bef3f1560ff538b04ea2a1d3ff 554 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 353 538 1.0E-6 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_1878 7d8e79bef3f1560ff538b04ea2a1d3ff 554 Gene3D G3DSA:1.10.3720.10 285 549 8.8E-33 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1878 7d8e79bef3f1560ff538b04ea2a1d3ff 554 SUPERFAMILY SSF161098 288 543 2.73E-38 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1878 7d8e79bef3f1560ff538b04ea2a1d3ff 554 Gene3D G3DSA:1.10.3720.10 8 269 2.8E-50 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1878 7d8e79bef3f1560ff538b04ea2a1d3ff 554 SUPERFAMILY SSF161098 5 261 2.34E-43 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2791 5ca4ba99af7ea493b2c0618d731b9551 199 Pfam PF09361 Phasin protein 8 104 7.7E-20 T 12-10-2018 IPR018968 Phasin ALFP_2791 5ca4ba99af7ea493b2c0618d731b9551 199 TIGRFAM TIGR01841 phasin: phasin family protein 27 112 6.8E-18 T 12-10-2018 IPR010127 Phasin, subfamily 1 ALFP_0111 0640c2583c5e093c406eee34c61b0f72 170 SUPERFAMILY SSF51182 35 153 1.56E-21 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_0111 0640c2583c5e093c406eee34c61b0f72 170 Gene3D G3DSA:2.60.120.10 29 168 2.7E-44 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_0111 0640c2583c5e093c406eee34c61b0f72 170 Pfam PF12973 ChrR Cupin-like domain 38 127 6.5E-12 T 12-10-2018 IPR025979 ChrR-like cupin domain ALFP_3562 3da02c575f0fa0cb92f42f82e766ce50 316 Pfam PF03466 LysR substrate binding domain 93 300 1.0E-23 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_3562 3da02c575f0fa0cb92f42f82e766ce50 316 Gene3D G3DSA:1.10.10.10 6 94 6.0E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3562 3da02c575f0fa0cb92f42f82e766ce50 316 Gene3D G3DSA:3.40.190.10 102 296 8.1E-37 T 12-10-2018 ALFP_3562 3da02c575f0fa0cb92f42f82e766ce50 316 SUPERFAMILY SSF53850 94 303 4.34E-26 T 12-10-2018 ALFP_3562 3da02c575f0fa0cb92f42f82e766ce50 316 Gene3D G3DSA:3.40.190.10 163 269 8.1E-37 T 12-10-2018 ALFP_3562 3da02c575f0fa0cb92f42f82e766ce50 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 2.9E-14 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_3562 3da02c575f0fa0cb92f42f82e766ce50 316 SUPERFAMILY SSF46785 4 86 4.39E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_3258 c923e3a69732b066f2c6e8a1d9f4c277 332 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 54 329 7.4E-77 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_3258 c923e3a69732b066f2c6e8a1d9f4c277 332 SUPERFAMILY SSF53850 122 298 2.75E-13 T 12-10-2018 ALFP_3258 c923e3a69732b066f2c6e8a1d9f4c277 332 PIRSF PIRSF017082 2 332 7.2E-76 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_3258 c923e3a69732b066f2c6e8a1d9f4c277 332 Gene3D G3DSA:3.40.190.10 134 257 6.6E-103 T 12-10-2018 ALFP_3258 c923e3a69732b066f2c6e8a1d9f4c277 332 Gene3D G3DSA:3.40.190.150 35 322 6.6E-103 T 12-10-2018 ALFP_2539 a06767af28c35e2c87371ed61ccce648 217 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 184 3.3E-34 T 12-10-2018 ALFP_2539 a06767af28c35e2c87371ed61ccce648 217 Gene3D G3DSA:3.40.50.1000 7 205 3.2E-54 T 12-10-2018 IPR023214 HAD superfamily ALFP_2539 a06767af28c35e2c87371ed61ccce648 217 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 6 184 1.1E-11 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 ALFP_2539 a06767af28c35e2c87371ed61ccce648 217 Gene3D G3DSA:1.10.150.240 19 84 3.2E-54 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 ALFP_2539 a06767af28c35e2c87371ed61ccce648 217 SUPERFAMILY SSF56784 2 213 9.21E-55 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_2539 a06767af28c35e2c87371ed61ccce648 217 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 101 178 3.1E-14 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 ALFP_0062 5cf3b674d9b4b737619328bddf355d95 240 SUPERFAMILY SSF46785 2 64 2.35E-9 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0062 5cf3b674d9b4b737619328bddf355d95 240 Pfam PF01614 Bacterial transcriptional regulator 117 235 3.9E-14 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal ALFP_0062 5cf3b674d9b4b737619328bddf355d95 240 Gene3D G3DSA:1.10.10.10 1 65 2.1E-10 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0062 5cf3b674d9b4b737619328bddf355d95 240 Gene3D G3DSA:3.30.450.40 66 232 1.9E-31 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_0062 5cf3b674d9b4b737619328bddf355d95 240 SUPERFAMILY SSF55781 51 237 5.76E-29 T 12-10-2018 ALFP_1541 25a67cf84f8d6edfad676f59763a229e 153 SUPERFAMILY SSF82649 15 143 7.32E-41 T 12-10-2018 ALFP_1541 25a67cf84f8d6edfad676f59763a229e 153 Pfam PF02657 Fe-S metabolism associated domain 20 137 1.2E-41 T 12-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like ALFP_1541 25a67cf84f8d6edfad676f59763a229e 153 Gene3D G3DSA:3.90.1010.10 10 150 2.2E-47 T 12-10-2018 ALFP_1834 d3861ec0dc7224673b1a0d68aa2e199a 297 Pfam PF05742 Transport and Golgi organisation 2 1 249 1.6E-60 T 12-10-2018 IPR008551 Transport and Golgi organisation protein 2 ALFP_1120 980cdcb61aa111312544766e398e4492 259 Pfam PF01925 Sulfite exporter TauE/SafE 11 253 3.5E-45 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 ALFP_2700 7bcaf4437143701699e6892e847277ae 271 Pfam PF00106 short chain dehydrogenase 9 196 1.9E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2700 7bcaf4437143701699e6892e847277ae 271 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_2700 7bcaf4437143701699e6892e847277ae 271 Gene3D G3DSA:3.40.50.720 5 269 4.8E-65 T 12-10-2018 ALFP_2700 7bcaf4437143701699e6892e847277ae 271 SUPERFAMILY SSF51735 1 259 1.03E-54 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2700 7bcaf4437143701699e6892e847277ae 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.9E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2700 7bcaf4437143701699e6892e847277ae 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.9E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2700 7bcaf4437143701699e6892e847277ae 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.9E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2700 7bcaf4437143701699e6892e847277ae 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.9E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2700 7bcaf4437143701699e6892e847277ae 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 1.9E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2700 7bcaf4437143701699e6892e847277ae 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.9E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3335 9b383ae8f4341e147811600838fa35c7 702 Pfam PF00593 TonB dependent receptor 239 701 1.2E-43 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_3335 9b383ae8f4341e147811600838fa35c7 702 Gene3D G3DSA:2.40.170.20 184 702 1.2E-71 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_3335 9b383ae8f4341e147811600838fa35c7 702 Gene3D G3DSA:2.170.130.10 49 171 2.2E-7 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_3335 9b383ae8f4341e147811600838fa35c7 702 SUPERFAMILY SSF56935 58 702 3.21E-83 T 12-10-2018 ALFP_3335 9b383ae8f4341e147811600838fa35c7 702 Pfam PF07715 TonB-dependent Receptor Plug Domain 77 166 8.4E-6 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_2202 bbea678b3bceee3c02ec60f8e55fdaa5 62 Pfam PF11450 Protein of unknwon function (DUF3008) 3 61 4.9E-26 T 12-10-2018 IPR021553 Protein of unknwon function DUF3008 ALFP_1537 338605556794aee2a497040b5541834a 213 Gene3D G3DSA:1.10.10.10 1 43 4.5E-12 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1537 338605556794aee2a497040b5541834a 213 SUPERFAMILY SSF46785 2 42 2.34E-6 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1537 338605556794aee2a497040b5541834a 213 Pfam PF08279 HTH domain 1 39 4.0E-14 T 12-10-2018 IPR013196 Helix-turn-helix, type 11 ALFP_1537 338605556794aee2a497040b5541834a 213 Pfam PF13280 WYL domain 122 204 3.5E-14 T 12-10-2018 IPR026881 WYL domain ALFP_1032 ec254dda3a1130ce992a6ccc1d43d63f 482 Pfam PF07690 Major Facilitator Superfamily 26 426 7.9E-45 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_1032 ec254dda3a1130ce992a6ccc1d43d63f 482 PRINTS PR01036 Tetracycline resistance protein TetB signature 146 170 2.9E-8 T 12-10-2018 ALFP_1032 ec254dda3a1130ce992a6ccc1d43d63f 482 PRINTS PR01036 Tetracycline resistance protein TetB signature 25 49 2.9E-8 T 12-10-2018 ALFP_1032 ec254dda3a1130ce992a6ccc1d43d63f 482 PRINTS PR01036 Tetracycline resistance protein TetB signature 417 436 2.9E-8 T 12-10-2018 ALFP_1032 ec254dda3a1130ce992a6ccc1d43d63f 482 PRINTS PR01036 Tetracycline resistance protein TetB signature 116 136 2.9E-8 T 12-10-2018 ALFP_1032 ec254dda3a1130ce992a6ccc1d43d63f 482 Gene3D G3DSA:1.20.1720.10 23 232 1.5E-45 T 12-10-2018 ALFP_1032 ec254dda3a1130ce992a6ccc1d43d63f 482 SUPERFAMILY SSF103473 7 473 1.05E-63 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_1032 ec254dda3a1130ce992a6ccc1d43d63f 482 Gene3D G3DSA:1.20.1250.20 280 480 6.8E-15 T 12-10-2018 ALFP_0934 0cb4a255dbac6f3dfe6e3aa1c8548206 124 Pfam PF16220 Domain of unknown function (DUF4880) 6 46 4.7E-8 T 12-10-2018 IPR032623 FecR, N-terminal ALFP_0405 ec9651fbd2e661923bd7fe156ea9e333 387 SMART SM00833 292 386 4.0E-20 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal ALFP_0405 ec9651fbd2e661923bd7fe156ea9e333 387 Gene3D G3DSA:3.40.50.300 30 233 2.5E-69 T 12-10-2018 ALFP_0405 ec9651fbd2e661923bd7fe156ea9e333 387 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 33 214 1.0E-52 T 12-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain ALFP_0405 ec9651fbd2e661923bd7fe156ea9e333 387 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 292 386 1.5E-23 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal ALFP_0405 ec9651fbd2e661923bd7fe156ea9e333 387 SUPERFAMILY SSF52540 33 237 2.85E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0405 ec9651fbd2e661923bd7fe156ea9e333 387 SUPERFAMILY SSF90002 292 386 1.7E-26 T 12-10-2018 ALFP_0405 ec9651fbd2e661923bd7fe156ea9e333 387 Gene3D G3DSA:3.30.1220.10 276 386 4.1E-31 T 12-10-2018 IPR036627 CobW-like, C-terminal domain superfamily ALFP_2328 4cf1988ab32b0b44a61a3f2e7c245792 288 SUPERFAMILY SSF46785 4 89 1.69E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2328 4cf1988ab32b0b44a61a3f2e7c245792 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.9E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2328 4cf1988ab32b0b44a61a3f2e7c245792 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.9E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2328 4cf1988ab32b0b44a61a3f2e7c245792 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.9E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2328 4cf1988ab32b0b44a61a3f2e7c245792 288 Gene3D G3DSA:1.10.10.10 3 94 3.9E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2328 4cf1988ab32b0b44a61a3f2e7c245792 288 Gene3D G3DSA:3.40.190.290 95 265 3.7E-25 T 12-10-2018 ALFP_2328 4cf1988ab32b0b44a61a3f2e7c245792 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 5.3E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_2328 4cf1988ab32b0b44a61a3f2e7c245792 288 SUPERFAMILY SSF53850 90 287 5.27E-27 T 12-10-2018 ALFP_2328 4cf1988ab32b0b44a61a3f2e7c245792 288 Pfam PF03466 LysR substrate binding domain 88 285 1.0E-21 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_1232 cb2a39763518c03653aa272175915560 429 Gene3D G3DSA:3.30.750.140 350 428 4.9E-5 T 12-10-2018 IPR038610 FliK-like, C-terminal domain superfamily ALFP_1232 cb2a39763518c03653aa272175915560 429 Pfam PF02120 Flagellar hook-length control protein FliK 344 418 6.6E-11 T 12-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal ALFP_0819 56ba2b36b93d9ef18aabfe180c510993 348 Gene3D G3DSA:3.90.1200.10 103 342 6.6E-67 T 12-10-2018 ALFP_0819 56ba2b36b93d9ef18aabfe180c510993 348 SUPERFAMILY SSF56112 14 335 7.58E-47 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily ALFP_0819 56ba2b36b93d9ef18aabfe180c510993 348 Gene3D G3DSA:3.30.200.20 12 102 1.5E-23 T 12-10-2018 ALFP_0819 56ba2b36b93d9ef18aabfe180c510993 348 Pfam PF01636 Phosphotransferase enzyme family 35 266 1.8E-34 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase ALFP_0063 c62ac33a7ab9b7726980e542fa28951c 531 Pfam PF16347 Domain of unknown function (DUF4976) 399 498 2.5E-7 T 12-10-2018 IPR032506 Domain of unknown function DUF4976 Reactome: R-HSA-2024096|Reactome: R-HSA-2206307 ALFP_0063 c62ac33a7ab9b7726980e542fa28951c 531 Pfam PF00884 Sulfatase 14 392 2.0E-55 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 ALFP_0063 c62ac33a7ab9b7726980e542fa28951c 531 SUPERFAMILY SSF53649 14 500 4.71E-111 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 ALFP_0063 c62ac33a7ab9b7726980e542fa28951c 531 Gene3D G3DSA:3.40.720.10 13 506 3.8E-154 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 ALFP_3173 ba1503992b86b12115b8ce52b557b726 241 Pfam PF01564 Spermine/spermidine synthase domain 49 161 3.4E-6 T 12-10-2018 ALFP_3173 ba1503992b86b12115b8ce52b557b726 241 SUPERFAMILY SSF53335 4 224 1.16E-42 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_3173 ba1503992b86b12115b8ce52b557b726 241 Gene3D G3DSA:3.40.50.150 5 233 4.4E-46 T 12-10-2018 ALFP_1581 2e033338a24a6bfe46bc7e70c62bbc7c 325 SUPERFAMILY SSF46689 274 319 3.9E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1581 2e033338a24a6bfe46bc7e70c62bbc7c 325 SMART SM00342 238 320 1.4E-13 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1581 2e033338a24a6bfe46bc7e70c62bbc7c 325 Pfam PF12833 Helix-turn-helix domain 244 318 1.5E-14 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_1581 2e033338a24a6bfe46bc7e70c62bbc7c 325 Gene3D G3DSA:1.10.10.60 218 323 4.8E-19 T 12-10-2018 ALFP_0263 a35a8c4858ddb30f93c20ff2dd164ed9 331 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 12-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 ALFP_0263 a35a8c4858ddb30f93c20ff2dd164ed9 331 Pfam PF01136 Peptidase family U32 75 330 7.5E-70 T 12-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 ALFP_1789 254814c9ff68bd347e40261625e1d9cd 161 Pfam PF04383 KilA-N domain 7 102 1.7E-17 T 12-10-2018 IPR018004 KilA, N-terminal/APSES-type HTH, DNA-binding ALFP_1789 254814c9ff68bd347e40261625e1d9cd 161 SMART SM01252 7 104 2.1E-26 T 12-10-2018 IPR018004 KilA, N-terminal/APSES-type HTH, DNA-binding ALFP_2999 55b681f9941f304388081583d4d9ee3d 374 Pfam PF11379 Protein of unknown function (DUF3182) 31 362 6.7E-99 T 12-10-2018 IPR021519 Protein of unknown function DUF3182 ALFP_0183 c2d1d9da8246e55edea58383702ef5e3 315 Gene3D G3DSA:3.40.190.170 14 314 1.2E-107 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_0183 c2d1d9da8246e55edea58383702ef5e3 315 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 20 296 1.8E-37 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_0956 a60774a3e2e2f9fc6fde468b8b22c2b0 202 Pfam PF13649 Methyltransferase domain 47 136 5.0E-15 T 12-10-2018 ALFP_0956 a60774a3e2e2f9fc6fde468b8b22c2b0 202 Gene3D G3DSA:3.40.50.150 1 197 1.4E-43 T 12-10-2018 ALFP_0956 a60774a3e2e2f9fc6fde468b8b22c2b0 202 SUPERFAMILY SSF53335 7 188 3.95E-37 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_2621 3999a3dc1a74d837e5f4b45db84d6e7f 444 SUPERFAMILY SSF53474 19 441 1.8E-58 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2621 3999a3dc1a74d837e5f4b45db84d6e7f 444 ProSitePatterns PS00122 Carboxylesterases type-B serine active site. 169 184 - T 12-10-2018 IPR019826 Carboxylesterase type B, active site ALFP_2621 3999a3dc1a74d837e5f4b45db84d6e7f 444 Pfam PF00135 Carboxylesterase family 19 317 6.4E-49 T 12-10-2018 IPR002018 Carboxylesterase, type B ALFP_2621 3999a3dc1a74d837e5f4b45db84d6e7f 444 Gene3D G3DSA:3.40.50.1820 11 444 1.1E-69 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2114 9257d4935601bc3471a358322332d011 264 Gene3D G3DSA:1.10.12.10 206 264 2.9E-22 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal ALFP_2114 9257d4935601bc3471a358322332d011 264 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 257 9.8E-30 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 ALFP_2114 9257d4935601bc3471a358322332d011 264 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 100 120 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 ALFP_2114 9257d4935601bc3471a358322332d011 264 SUPERFAMILY SSF52096 8 262 2.28E-57 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_2114 9257d4935601bc3471a358322332d011 264 Gene3D G3DSA:3.90.226.10 2 205 9.4E-56 T 12-10-2018 ALFP_0695 d40842d0792e12bc9f7d0e31dcebac00 360 TIGRFAM TIGR03978 rSAM_paired_1: His-Xaa-Ser system radical SAM maturase HxsB 1 352 9.1E-129 T 12-10-2018 IPR024023 His-Xaa-Ser system radical SAM maturase HxsB ALFP_0695 d40842d0792e12bc9f7d0e31dcebac00 360 SUPERFAMILY SSF102114 1 299 1.18E-21 T 12-10-2018 ALFP_0695 d40842d0792e12bc9f7d0e31dcebac00 360 Gene3D G3DSA:3.20.20.70 1 342 7.1E-42 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_3006 cf606ec1ca2545b4a405a3e857d86e8f 358 Gene3D G3DSA:3.30.1540.10 202 293 8.8E-123 T 12-10-2018 ALFP_3006 cf606ec1ca2545b4a405a3e857d86e8f 358 Gene3D G3DSA:3.40.50.10540 1 315 8.8E-123 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_3006 cf606ec1ca2545b4a405a3e857d86e8f 358 Pfam PF02515 CoA-transferase family III 1 349 5.4E-118 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 ALFP_3006 cf606ec1ca2545b4a405a3e857d86e8f 358 SUPERFAMILY SSF89796 1 354 1.18E-120 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily ALFP_3203 8ce30b1b7ac2a95216e6d122794d0da6 272 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 265 2.0E-90 T 12-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 ALFP_3203 8ce30b1b7ac2a95216e6d122794d0da6 272 Gene3D G3DSA:3.40.1190.20 1 270 3.5E-97 T 12-10-2018 IPR029056 Ribokinase-like ALFP_3203 8ce30b1b7ac2a95216e6d122794d0da6 272 Pfam PF08543 Phosphomethylpyrimidine kinase 12 263 1.7E-87 T 12-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 ALFP_3203 8ce30b1b7ac2a95216e6d122794d0da6 272 SUPERFAMILY SSF53613 2 269 3.59E-75 T 12-10-2018 IPR029056 Ribokinase-like ALFP_0737 e7c475486935d4bd18599ee5df8d6c76 242 PIRSF PIRSF015601 2 241 4.4E-51 T 12-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 ALFP_0737 e7c475486935d4bd18599ee5df8d6c76 242 SUPERFAMILY SSF88697 4 60 4.47E-11 T 12-10-2018 IPR015947 PUA-like superfamily ALFP_0737 e7c475486935d4bd18599ee5df8d6c76 242 Gene3D G3DSA:2.40.240.20 1 66 8.1E-17 T 12-10-2018 ALFP_0737 e7c475486935d4bd18599ee5df8d6c76 242 SUPERFAMILY SSF75217 74 240 3.4E-45 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases ALFP_0737 e7c475486935d4bd18599ee5df8d6c76 242 Pfam PF04452 RNA methyltransferase 20 237 5.0E-60 T 12-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 ALFP_0737 e7c475486935d4bd18599ee5df8d6c76 242 Gene3D G3DSA:3.40.1280.10 73 242 4.1E-53 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal ALFP_0737 e7c475486935d4bd18599ee5df8d6c76 242 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 4 238 1.9E-49 T 12-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 ALFP_2827 943e0989dc9be58dd840971d25bf0c76 89 PRINTS PR00606 Class ID cytochrome C signature 69 79 1.3E-8 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 ALFP_2827 943e0989dc9be58dd840971d25bf0c76 89 PRINTS PR00606 Class ID cytochrome C signature 57 67 1.3E-8 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 ALFP_2827 943e0989dc9be58dd840971d25bf0c76 89 PRINTS PR00606 Class ID cytochrome C signature 17 30 1.3E-8 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 ALFP_2827 943e0989dc9be58dd840971d25bf0c76 89 PRINTS PR00606 Class ID cytochrome C signature 2 15 1.3E-8 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 ALFP_2827 943e0989dc9be58dd840971d25bf0c76 89 Gene3D G3DSA:1.10.760.10 2 81 2.7E-24 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2827 943e0989dc9be58dd840971d25bf0c76 89 Pfam PF00034 Cytochrome c 4 80 4.3E-8 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2827 943e0989dc9be58dd840971d25bf0c76 89 SUPERFAMILY SSF46626 5 80 7.16E-16 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0911 325e273941928cca6a94c5613d9bd543 453 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 349 448 2.4E-14 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_0911 325e273941928cca6a94c5613d9bd543 453 SMART SM00387 349 453 3.7E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase ALFP_0911 325e273941928cca6a94c5613d9bd543 453 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 398 1.4E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_0911 325e273941928cca6a94c5613d9bd543 453 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 433 1.4E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 ALFP_0911 325e273941928cca6a94c5613d9bd543 453 SUPERFAMILY SSF55874 314 451 2.88E-27 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_0911 325e273941928cca6a94c5613d9bd543 453 Gene3D G3DSA:3.30.565.10 312 453 5.6E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily ALFP_0574 d0b3b125b631b997e4706771fd836598 187 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 10 186 1.1E-45 T 12-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 ALFP_0574 d0b3b125b631b997e4706771fd836598 187 Gene3D G3DSA:2.70.40.10 1 159 3.3E-50 T 12-10-2018 IPR036157 dUTPase-like superfamily ALFP_0574 d0b3b125b631b997e4706771fd836598 187 Hamap MF_00146 dCTP deaminase [dcd]. 2 187 27.505 T 12-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 ALFP_0574 d0b3b125b631b997e4706771fd836598 187 SUPERFAMILY SSF51283 3 186 1.96E-51 T 12-10-2018 IPR036157 dUTPase-like superfamily ALFP_0574 d0b3b125b631b997e4706771fd836598 187 Pfam PF00692 dUTPase 80 182 6.7E-7 T 12-10-2018 IPR029054 dUTPase-like ALFP_0479 f51dfcf133a38b63ce762b2c588dc4bf 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 320 1.3E-55 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0479 f51dfcf133a38b63ce762b2c588dc4bf 325 Gene3D G3DSA:3.40.190.150 31 314 1.5E-83 T 12-10-2018 ALFP_0479 f51dfcf133a38b63ce762b2c588dc4bf 325 SUPERFAMILY SSF53850 31 299 6.88E-8 T 12-10-2018 ALFP_0479 f51dfcf133a38b63ce762b2c588dc4bf 325 PIRSF PIRSF017082 1 323 5.3E-66 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0479 f51dfcf133a38b63ce762b2c588dc4bf 325 Gene3D G3DSA:3.40.190.10 127 249 1.5E-83 T 12-10-2018 ALFP_1950 12fe7807628d4ad0f45dda63708517d8 117 Gene3D G3DSA:3.10.20.280 1 97 5.6E-22 T 12-10-2018 IPR037021 RnfH superfamily ALFP_1950 12fe7807628d4ad0f45dda63708517d8 117 Pfam PF01424 R3H domain 69 105 4.7E-5 T 12-10-2018 IPR001374 R3H domain GO:0003676 ALFP_1950 12fe7807628d4ad0f45dda63708517d8 117 Hamap MF_00460 Protein RnfH [rnfH]. 4 108 17.876 T 12-10-2018 IPR005346 RnfH protein ALFP_1950 12fe7807628d4ad0f45dda63708517d8 117 SUPERFAMILY SSF54285 4 87 6.8E-14 T 12-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp ALFP_1950 12fe7807628d4ad0f45dda63708517d8 117 Pfam PF03658 RnfH family Ubiquitin 5 95 6.3E-21 T 12-10-2018 IPR005346 RnfH protein ALFP_2444 21bc1c9b2b03d89b78e8419d66331832 243 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 235 9.5E-88 T 12-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2444 21bc1c9b2b03d89b78e8419d66331832 243 Pfam PF01709 Transcriptional regulator 5 236 8.2E-90 T 12-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2444 21bc1c9b2b03d89b78e8419d66331832 243 Gene3D G3DSA:3.30.70.980 130 205 4.1E-46 T 12-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2444 21bc1c9b2b03d89b78e8419d66331832 243 Gene3D G3DSA:3.30.70.980 86 235 4.1E-46 T 12-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2444 21bc1c9b2b03d89b78e8419d66331832 243 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 33.596 T 12-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2444 21bc1c9b2b03d89b78e8419d66331832 243 Gene3D G3DSA:1.10.10.200 1 81 2.9E-34 T 12-10-2018 IPR017856 Integrase-like, N-terminal ALFP_2444 21bc1c9b2b03d89b78e8419d66331832 243 SUPERFAMILY SSF75625 3 241 2.22E-90 T 12-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2885 2635c488041bd3e837619a0eddfb668a 127 Pfam PF01219 Prokaryotic diacylglycerol kinase 20 119 1.6E-34 T 12-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 ALFP_2885 2635c488041bd3e837619a0eddfb668a 127 Gene3D G3DSA:1.10.3830.10 7 125 1.1E-37 T 12-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 ALFP_2585 76bdf4017ba81d49fd755e089ae1a8a4 455 SUPERFAMILY SSF140490 355 452 3.4E-39 T 12-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2585 76bdf4017ba81d49fd755e089ae1a8a4 455 SUPERFAMILY SSF142019 42 269 3.4E-82 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2585 76bdf4017ba81d49fd755e089ae1a8a4 455 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 77 248 1.7E-44 T 12-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2585 76bdf4017ba81d49fd755e089ae1a8a4 455 SUPERFAMILY SSF142984 270 353 6.8E-26 T 12-10-2018 ALFP_2585 76bdf4017ba81d49fd755e089ae1a8a4 455 Pfam PF10531 SLBB domain 272 320 9.0E-14 T 12-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2585 76bdf4017ba81d49fd755e089ae1a8a4 455 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 371 382 - T 12-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2585 76bdf4017ba81d49fd755e089ae1a8a4 455 Gene3D G3DSA:3.40.50.11540 82 259 4.4E-73 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2585 76bdf4017ba81d49fd755e089ae1a8a4 455 SMART SM00928 358 403 1.0E-26 T 12-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2585 76bdf4017ba81d49fd755e089ae1a8a4 455 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 44 444 1.8E-190 T 12-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2585 76bdf4017ba81d49fd755e089ae1a8a4 455 Gene3D G3DSA:3.10.20.600 261 355 1.3E-33 T 12-10-2018 ALFP_2585 76bdf4017ba81d49fd755e089ae1a8a4 455 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 362 443 1.0E-31 T 12-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2585 76bdf4017ba81d49fd755e089ae1a8a4 455 Gene3D G3DSA:1.20.1440.230 356 451 2.1E-35 T 12-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_1601 16dc6df5afe3cb39837cd5275d93301a 291 Gene3D G3DSA:3.40.50.1820 1 286 1.5E-27 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1601 16dc6df5afe3cb39837cd5275d93301a 291 Pfam PF12146 Serine aminopeptidase, S33 25 139 1.7E-12 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 ALFP_1601 16dc6df5afe3cb39837cd5275d93301a 291 SUPERFAMILY SSF53474 5 282 2.22E-31 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1601 16dc6df5afe3cb39837cd5275d93301a 291 PIRSF PIRSF037442 1 285 8.6E-86 T 12-10-2018 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 ALFP_2409 f3079c978bb79dc798c261257d14d891 341 SUPERFAMILY SSF51569 2 326 9.63E-134 T 12-10-2018 ALFP_2409 f3079c978bb79dc798c261257d14d891 341 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 2 327 9.5E-160 T 12-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 ALFP_2409 f3079c978bb79dc798c261257d14d891 341 Gene3D G3DSA:3.20.20.70 1 328 2.9E-157 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_2409 f3079c978bb79dc798c261257d14d891 341 Pfam PF00793 DAHP synthetase I family 22 316 6.6E-102 T 12-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 ALFP_2409 f3079c978bb79dc798c261257d14d891 341 PIRSF PIRSF001361 1 330 2.1E-156 T 12-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 ALFP_1645 3f6ca0767b3140fc2c49f0d896cc381b 114 Gene3D G3DSA:3.90.1680.10 16 114 5.0E-15 T 12-10-2018 IPR036590 SOS response associated peptidase-like ALFP_1645 3f6ca0767b3140fc2c49f0d896cc381b 114 Pfam PF02586 SOS response associated peptidase (SRAP) 24 93 1.1E-10 T 12-10-2018 IPR003738 SOS response associated peptidase (SRAP) ALFP_1645 3f6ca0767b3140fc2c49f0d896cc381b 114 SUPERFAMILY SSF143081 22 111 1.14E-14 T 12-10-2018 IPR036590 SOS response associated peptidase-like ALFP_0134 1a98b0edc44c6cb5f8c8ae1054128ef0 152 Pfam PF04361 Protein of unknown function (DUF494) 1 152 9.7E-52 T 12-10-2018 IPR007456 Smg ALFP_0134 1a98b0edc44c6cb5f8c8ae1054128ef0 152 Hamap MF_00598 Protein Smg [smg]. 1 152 25.458 T 12-10-2018 IPR007456 Smg ALFP_1538 fc66e7542347f325da70170be9bde0dd 407 SMART SM00833 268 383 4.4E-54 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal ALFP_1538 fc66e7542347f325da70170be9bde0dd 407 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 17 221 4.4E-57 T 12-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain ALFP_1538 fc66e7542347f325da70170be9bde0dd 407 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 269 383 5.0E-29 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal ALFP_1538 fc66e7542347f325da70170be9bde0dd 407 SUPERFAMILY SSF52540 14 334 5.31E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1538 fc66e7542347f325da70170be9bde0dd 407 Gene3D G3DSA:3.40.50.300 14 241 4.6E-73 T 12-10-2018 ALFP_2875 66ebe2065310f95c71e7c4023ec9ec4f 155 Pfam PF07080 Protein of unknown function (DUF1348) 8 137 4.1E-64 T 12-10-2018 IPR009783 Protein of unknown function DUF1348 ALFP_2875 66ebe2065310f95c71e7c4023ec9ec4f 155 Gene3D G3DSA:3.10.450.50 11 155 2.5E-73 T 12-10-2018 ALFP_2875 66ebe2065310f95c71e7c4023ec9ec4f 155 SUPERFAMILY SSF54427 2 155 1.7E-78 T 12-10-2018 IPR032710 NTF2-like domain superfamily ALFP_1294 2da1cd22499001796073d37f4cdfc51d 442 Pfam PF07158 Dicarboxylate carrier protein MatC N-terminus 1 136 1.5E-56 T 12-10-2018 IPR009827 Dicarboxylate carrier MatC N-terminal ALFP_1845 1ca1e8b949572b9a080fdf1408cddeb1 249 SUPERFAMILY SSF51735 2 231 2.83E-59 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1845 1ca1e8b949572b9a080fdf1408cddeb1 249 Gene3D G3DSA:3.40.50.720 4 235 2.1E-62 T 12-10-2018 ALFP_1845 1ca1e8b949572b9a080fdf1408cddeb1 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 1.2E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1845 1ca1e8b949572b9a080fdf1408cddeb1 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 1.2E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1845 1ca1e8b949572b9a080fdf1408cddeb1 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 1.2E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1845 1ca1e8b949572b9a080fdf1408cddeb1 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 1.2E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1845 1ca1e8b949572b9a080fdf1408cddeb1 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 1.2E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1845 1ca1e8b949572b9a080fdf1408cddeb1 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 1.2E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1845 1ca1e8b949572b9a080fdf1408cddeb1 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 4.3E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1845 1ca1e8b949572b9a080fdf1408cddeb1 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 4.3E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1845 1ca1e8b949572b9a080fdf1408cddeb1 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 4.3E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1845 1ca1e8b949572b9a080fdf1408cddeb1 249 Pfam PF00106 short chain dehydrogenase 2 187 9.9E-53 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1845 1ca1e8b949572b9a080fdf1408cddeb1 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_0545 e04ccdebd62a45f4cc8255e80742f2b7 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 1.8E-23 T 12-10-2018 IPR010035 ThiS, thiamine-biosynthesis ALFP_0545 e04ccdebd62a45f4cc8255e80742f2b7 66 Gene3D G3DSA:3.10.20.30 1 66 8.6E-23 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_0545 e04ccdebd62a45f4cc8255e80742f2b7 66 SUPERFAMILY SSF54285 2 65 3.49E-18 T 12-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp ALFP_0545 e04ccdebd62a45f4cc8255e80742f2b7 66 Pfam PF02597 ThiS family 3 66 3.6E-16 T 12-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 ALFP_3070 aec344c7eb7734f28dde651bc5572387 365 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 4 365 37.789 T 12-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 ALFP_3070 aec344c7eb7734f28dde651bc5572387 365 SUPERFAMILY SSF53067 6 339 6.48E-21 T 12-10-2018 ALFP_3070 aec344c7eb7734f28dde651bc5572387 365 Gene3D G3DSA:3.30.420.40 141 325 1.9E-115 T 12-10-2018 ALFP_3070 aec344c7eb7734f28dde651bc5572387 365 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 5 365 5.9E-132 T 12-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 ALFP_3070 aec344c7eb7734f28dde651bc5572387 365 Gene3D G3DSA:3.30.420.40 11 360 1.9E-115 T 12-10-2018 ALFP_3285 a4ae683e81124390472077a81bfca64b 334 Pfam PF02397 Bacterial sugar transferase 147 327 1.2E-60 T 12-10-2018 IPR003362 Bacterial sugar transferase ALFP_3285 a4ae683e81124390472077a81bfca64b 334 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 86 333 8.4E-90 T 12-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase ALFP_1412 f816a92cc2b924c790a5aebf8f3d172b 154 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_1412 f816a92cc2b924c790a5aebf8f3d172b 154 TIGRFAM TIGR00754 bfr: bacterioferritin 1 154 3.7E-42 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_1412 f816a92cc2b924c790a5aebf8f3d172b 154 Pfam PF00210 Ferritin-like domain 9 143 1.0E-34 T 12-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 ALFP_1412 f816a92cc2b924c790a5aebf8f3d172b 154 SUPERFAMILY SSF47240 1 154 2.71E-43 T 12-10-2018 IPR009078 Ferritin-like superfamily ALFP_1412 f816a92cc2b924c790a5aebf8f3d172b 154 PRINTS PR00601 Bacterioferritin signature 85 105 1.2E-38 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_1412 f816a92cc2b924c790a5aebf8f3d172b 154 PRINTS PR00601 Bacterioferritin signature 106 126 1.2E-38 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_1412 f816a92cc2b924c790a5aebf8f3d172b 154 PRINTS PR00601 Bacterioferritin signature 23 43 1.2E-38 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_1412 f816a92cc2b924c790a5aebf8f3d172b 154 PRINTS PR00601 Bacterioferritin signature 44 64 1.2E-38 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_1412 f816a92cc2b924c790a5aebf8f3d172b 154 PRINTS PR00601 Bacterioferritin signature 3 22 1.2E-38 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_1412 f816a92cc2b924c790a5aebf8f3d172b 154 PRINTS PR00601 Bacterioferritin signature 128 149 1.2E-38 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_1412 f816a92cc2b924c790a5aebf8f3d172b 154 Gene3D G3DSA:1.20.1260.10 1 154 1.6E-58 T 12-10-2018 IPR012347 Ferritin-like ALFP_1412 f816a92cc2b924c790a5aebf8f3d172b 154 PIRSF PIRSF002560 1 154 2.1E-58 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 ALFP_0145 2938a32a98372d7abdcdba94907e7cec 247 Pfam PF05036 Sporulation related domain 172 246 3.9E-17 T 12-10-2018 IPR007730 Sporulation-like domain GO:0042834 ALFP_0145 2938a32a98372d7abdcdba94907e7cec 247 Gene3D G3DSA:3.30.70.1070 168 246 7.1E-18 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 ALFP_0145 2938a32a98372d7abdcdba94907e7cec 247 SUPERFAMILY SSF110997 172 246 5.75E-19 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 ALFP_0504 6fc749970dc79187b09ee1a6a2051c40 183 Pfam PF00578 AhpC/TSA family 28 155 1.4E-23 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 ALFP_0504 6fc749970dc79187b09ee1a6a2051c40 183 PIRSF PIRSF000239 21 182 3.6E-18 T 12-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 ALFP_0504 6fc749970dc79187b09ee1a6a2051c40 183 SUPERFAMILY SSF52833 24 176 1.43E-36 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_0504 6fc749970dc79187b09ee1a6a2051c40 183 Gene3D G3DSA:3.40.30.10 19 178 7.3E-33 T 12-10-2018 ALFP_0950 138282227a6a9d543915e76468a60f26 254 Gene3D G3DSA:3.40.50.1360 3 247 6.2E-84 T 12-10-2018 ALFP_0950 138282227a6a9d543915e76468a60f26 254 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 119 137 - T 12-10-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 ALFP_0950 138282227a6a9d543915e76468a60f26 254 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 9 228 3.7E-20 T 12-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 ALFP_0950 138282227a6a9d543915e76468a60f26 254 SUPERFAMILY SSF100950 3 242 2.88E-81 T 12-10-2018 IPR037171 NagB/RpiA transferase-like ALFP_3660 7cced60a0300f2ec1be1ae2585dbca55 109 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 109 24.022 T 12-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3660 7cced60a0300f2ec1be1ae2585dbca55 109 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 3.3E-43 T 12-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3660 7cced60a0300f2ec1be1ae2585dbca55 109 SUPERFAMILY SSF54843 1 107 1.27E-37 T 12-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 ALFP_3660 7cced60a0300f2ec1be1ae2585dbca55 109 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 12-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3660 7cced60a0300f2ec1be1ae2585dbca55 109 Pfam PF00237 Ribosomal protein L22p/L17e 7 107 1.9E-33 T 12-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 ALFP_3660 7cced60a0300f2ec1be1ae2585dbca55 109 Gene3D G3DSA:3.90.470.10 1 109 1.2E-40 T 12-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 ALFP_1747 ff4e364b77885ab814bc7e14ee92ef47 119 Pfam PF10765 Protein of unknown function (DUF2591) 3 105 7.4E-21 T 12-10-2018 IPR019701 Bacteriophage P22, NinX ALFP_2174 5279c0154744658dd6872f126855af3f 179 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 130 8.4E-32 T 12-10-2018 ALFP_2174 5279c0154744658dd6872f126855af3f 179 SUPERFAMILY SSF54593 8 146 3.89E-18 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_2174 5279c0154744658dd6872f126855af3f 179 Gene3D G3DSA:3.10.180.10 3 145 9.2E-32 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_1679 2f813382a6b75da4cf123ddb0d7f4a82 234 Pfam PF01925 Sulfite exporter TauE/SafE 8 229 1.5E-24 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 ALFP_1409 4d775a4e466f5ceff6dd855704c6da70 198 Pfam PF01618 MotA/TolQ/ExbB proton channel family 64 182 3.1E-27 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel ALFP_2542 fff731192701534306e222c9aeb74871 237 Pfam PF01039 Carboxyl transferase domain 41 186 6.5E-15 T 12-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 ALFP_2542 fff731192701534306e222c9aeb74871 237 Gene3D G3DSA:3.90.226.10 1 232 2.7E-72 T 12-10-2018 ALFP_2542 fff731192701534306e222c9aeb74871 237 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 146 163 4.0E-39 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_2542 fff731192701534306e222c9aeb74871 237 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 175 186 4.0E-39 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_2542 fff731192701534306e222c9aeb74871 237 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 75 89 4.0E-39 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_2542 fff731192701534306e222c9aeb74871 237 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 197 206 4.0E-39 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_2542 fff731192701534306e222c9aeb74871 237 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 109 127 4.0E-39 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_2542 fff731192701534306e222c9aeb74871 237 SUPERFAMILY SSF52096 2 229 1.09E-73 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_2542 fff731192701534306e222c9aeb74871 237 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 227 31.372 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_2542 fff731192701534306e222c9aeb74871 237 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 229 1.1E-106 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 ALFP_3675 8ad226bd196b377948545ed12de299d6 364 Pfam PF04773 FecR protein 118 219 2.3E-14 T 12-10-2018 IPR006860 FecR protein ALFP_3675 8ad226bd196b377948545ed12de299d6 364 Gene3D G3DSA:2.60.40.10 256 344 1.3E-5 T 12-10-2018 IPR013783 Immunoglobulin-like fold ALFP_3675 8ad226bd196b377948545ed12de299d6 364 SUPERFAMILY SSF54106 32 80 9.81E-6 T 12-10-2018 ALFP_3675 8ad226bd196b377948545ed12de299d6 364 Gene3D G3DSA:3.10.350.10 28 86 7.7E-8 T 12-10-2018 IPR036779 LysM domain superfamily ALFP_3675 8ad226bd196b377948545ed12de299d6 364 SMART SM00257 33 80 0.0011 T 12-10-2018 IPR018392 LysM domain ALFP_3675 8ad226bd196b377948545ed12de299d6 364 Pfam PF01476 LysM domain 34 80 1.7E-6 T 12-10-2018 IPR018392 LysM domain ALFP_3690 272274f47d5ca5169ddb3030393ecf99 300 Pfam PF02195 ParB-like nuclease domain 31 122 2.2E-24 T 12-10-2018 IPR003115 ParB/Sulfiredoxin ALFP_3690 272274f47d5ca5169ddb3030393ecf99 300 SMART SM00470 29 122 2.5E-33 T 12-10-2018 IPR003115 ParB/Sulfiredoxin ALFP_3690 272274f47d5ca5169ddb3030393ecf99 300 SUPERFAMILY SSF109709 115 221 6.02E-34 T 12-10-2018 ALFP_3690 272274f47d5ca5169ddb3030393ecf99 300 Gene3D G3DSA:3.90.1530.30 42 108 4.8E-28 T 12-10-2018 ALFP_3690 272274f47d5ca5169ddb3030393ecf99 300 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 29 204 4.2E-56 T 12-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 ALFP_3690 272274f47d5ca5169ddb3030393ecf99 300 Gene3D G3DSA:1.10.10.2830 109 222 6.6E-36 T 12-10-2018 ALFP_3690 272274f47d5ca5169ddb3030393ecf99 300 SUPERFAMILY SSF110849 31 124 2.62E-27 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily ALFP_0925 7e29a0511c44c9903bb0a564a5750158 572 Gene3D G3DSA:1.20.1730.10 56 569 1.5E-60 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily ALFP_0925 7e29a0511c44c9903bb0a564a5750158 572 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 68 488 3.6E-61 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 ALFP_0925 7e29a0511c44c9903bb0a564a5750158 572 Pfam PF00474 Sodium:solute symporter family 68 489 1.1E-114 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 ALFP_0925 7e29a0511c44c9903bb0a564a5750158 572 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 183 208 - T 12-10-2018 IPR018212 Sodium/solute symporter, conserved site ALFP_3371 5c559d50c53eb69031e3513a2f0f3488 515 Gene3D G3DSA:3.40.720.10 225 504 3.5E-30 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 ALFP_3371 5c559d50c53eb69031e3513a2f0f3488 515 SUPERFAMILY SSF53649 276 448 7.85E-17 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 ALFP_3371 5c559d50c53eb69031e3513a2f0f3488 515 Pfam PF00884 Sulfatase 263 507 2.6E-25 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 ALFP_2286 dbe5562d724060860c93c98d906aeaf9 437 TIGRFAM TIGR02155 PA_CoA_ligase: phenylacetate-CoA ligase 14 435 1.3E-219 T 12-10-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 ALFP_2286 dbe5562d724060860c93c98d906aeaf9 437 Gene3D G3DSA:3.30.300.30 330 437 9.9E-30 T 12-10-2018 ALFP_2286 dbe5562d724060860c93c98d906aeaf9 437 Gene3D G3DSA:3.40.50.12780 2 329 7.7E-143 T 12-10-2018 ALFP_2286 dbe5562d724060860c93c98d906aeaf9 437 Pfam PF14535 AMP-binding enzyme C-terminal domain 338 435 1.2E-24 T 12-10-2018 IPR028154 AMP-dependent ligase, C-terminal ALFP_2286 dbe5562d724060860c93c98d906aeaf9 437 PIRSF PIRSF006444 2 437 4.5E-207 T 12-10-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 ALFP_2286 dbe5562d724060860c93c98d906aeaf9 437 Pfam PF00501 AMP-binding enzyme 81 292 2.8E-16 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 ALFP_2286 dbe5562d724060860c93c98d906aeaf9 437 SUPERFAMILY SSF56801 27 432 1.96E-64 T 12-10-2018 ALFP_1959 ff2453105084843d42f43c28fb415da6 201 Hamap MF_00052_B Ribonuclease HII [rnhB]. 15 195 37.177 T 12-10-2018 IPR022898 Ribonuclease HII GO:0004523 ALFP_1959 ff2453105084843d42f43c28fb415da6 201 Pfam PF01351 Ribonuclease HII 17 194 7.0E-40 T 12-10-2018 IPR024567 Ribonuclease HII/HIII domain ALFP_1959 ff2453105084843d42f43c28fb415da6 201 SUPERFAMILY SSF53098 12 198 2.28E-66 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily ALFP_1959 ff2453105084843d42f43c28fb415da6 201 Gene3D G3DSA:3.30.420.10 3 201 2.9E-75 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 ALFP_2488 1e82238cddbb2813df2cd0d44f591c7a 148 SMART SM00347 24 125 2.5E-22 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2488 1e82238cddbb2813df2cd0d44f591c7a 148 Gene3D G3DSA:1.10.10.10 3 140 1.1E-31 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2488 1e82238cddbb2813df2cd0d44f591c7a 148 Pfam PF12802 MarR family 29 88 9.3E-14 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2488 1e82238cddbb2813df2cd0d44f591c7a 148 SUPERFAMILY SSF46785 8 141 1.2E-30 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2488 1e82238cddbb2813df2cd0d44f591c7a 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 49 65 6.2E-7 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2488 1e82238cddbb2813df2cd0d44f591c7a 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 6.2E-7 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2488 1e82238cddbb2813df2cd0d44f591c7a 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 6.2E-7 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2431 8e9e1bbe9a331fb7bc60e12f83ad6437 185 Gene3D G3DSA:3.40.630.30 27 184 7.0E-50 T 12-10-2018 ALFP_2431 8e9e1bbe9a331fb7bc60e12f83ad6437 185 SUPERFAMILY SSF55729 17 146 5.56E-20 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_2431 8e9e1bbe9a331fb7bc60e12f83ad6437 185 TIGRFAM TIGR02406 ectoine_EctA: diaminobutyrate acetyltransferase 28 182 6.3E-62 T 12-10-2018 IPR012772 L-2,4-diaminobutyric acid acetyltransferase GO:0019491|GO:0033816 KEGG: 00260+2.3.1.178 ALFP_2431 8e9e1bbe9a331fb7bc60e12f83ad6437 185 Pfam PF00583 Acetyltransferase (GNAT) family 54 145 2.4E-13 T 12-10-2018 IPR000182 GNAT domain ALFP_1161 642b3328ebfbb5f4e3c03454dafc83f9 380 Pfam PF13609 Gram-negative porin 7 360 2.3E-47 T 12-10-2018 ALFP_1161 642b3328ebfbb5f4e3c03454dafc83f9 380 Gene3D G3DSA:2.40.160.10 12 380 1.0E-79 T 12-10-2018 IPR023614 Porin domain superfamily ALFP_1161 642b3328ebfbb5f4e3c03454dafc83f9 380 PRINTS PR00184 Neisseria sp. porin signature 61 86 5.8E-6 T 12-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 ALFP_1161 642b3328ebfbb5f4e3c03454dafc83f9 380 PRINTS PR00184 Neisseria sp. porin signature 161 178 5.8E-6 T 12-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 ALFP_1161 642b3328ebfbb5f4e3c03454dafc83f9 380 SUPERFAMILY SSF56935 22 380 3.05E-66 T 12-10-2018 ALFP_2848 6ef1d4ca1b0ef759ea0a6f50ff8a701a 268 Pfam PF12697 Alpha/beta hydrolase family 31 260 9.3E-18 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_2848 6ef1d4ca1b0ef759ea0a6f50ff8a701a 268 Gene3D G3DSA:3.40.50.1820 10 268 8.6E-45 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2848 6ef1d4ca1b0ef759ea0a6f50ff8a701a 268 SUPERFAMILY SSF53474 6 267 2.26E-46 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1340 7df4d1cdf319643ca3576f5ce1030e8e 393 Gene3D G3DSA:3.40.50.2300 28 353 2.2E-90 T 12-10-2018 ALFP_1340 7df4d1cdf319643ca3576f5ce1030e8e 393 Pfam PF13458 Periplasmic binding protein 28 361 1.0E-74 T 12-10-2018 IPR028081 Leucine-binding protein domain ALFP_1340 7df4d1cdf319643ca3576f5ce1030e8e 393 Gene3D G3DSA:3.40.50.2300 144 359 2.2E-90 T 12-10-2018 ALFP_1340 7df4d1cdf319643ca3576f5ce1030e8e 393 SUPERFAMILY SSF53822 28 386 1.55E-82 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_2033 971912333bbc58c1af9d9a821019a340 446 SUPERFAMILY SSF51905 36 337 4.4E-38 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2033 971912333bbc58c1af9d9a821019a340 446 Gene3D G3DSA:3.50.50.60 39 394 4.2E-61 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2033 971912333bbc58c1af9d9a821019a340 446 Pfam PF01266 FAD dependent oxidoreductase 39 394 1.8E-47 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 ALFP_2033 971912333bbc58c1af9d9a821019a340 446 Gene3D G3DSA:3.30.9.10 133 355 4.2E-61 T 12-10-2018 ALFP_3452 549d6d86acfbadffd9ed30ecc84fce1a 186 Gene3D G3DSA:1.10.357.10 47 183 9.9E-10 T 12-10-2018 ALFP_3452 549d6d86acfbadffd9ed30ecc84fce1a 186 SUPERFAMILY SSF48498 91 181 2.22E-6 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily ALFP_3452 549d6d86acfbadffd9ed30ecc84fce1a 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 49 4.2E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_3452 549d6d86acfbadffd9ed30ecc84fce1a 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 5 18 4.2E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_3452 549d6d86acfbadffd9ed30ecc84fce1a 186 SUPERFAMILY SSF46689 2 74 7.56E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_3452 549d6d86acfbadffd9ed30ecc84fce1a 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 5 44 4.3E-16 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_3452 549d6d86acfbadffd9ed30ecc84fce1a 186 Gene3D G3DSA:1.10.10.60 1 46 6.4E-18 T 12-10-2018 ALFP_3549 dd046928d16fa928ae8530ddd635faf2 71 Pfam PF00085 Thioredoxin 1 69 1.0E-13 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 ALFP_3549 dd046928d16fa928ae8530ddd635faf2 71 Gene3D G3DSA:3.40.30.10 1 70 4.3E-19 T 12-10-2018 ALFP_3549 dd046928d16fa928ae8530ddd635faf2 71 SUPERFAMILY SSF52833 1 69 8.11E-21 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_3236 38b2b2b981ad7a254bfaca00f85f4d6d 108 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 98 2.7E-32 T 12-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 ALFP_3236 38b2b2b981ad7a254bfaca00f85f4d6d 108 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 92 5.5E-27 T 12-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 ALFP_3236 38b2b2b981ad7a254bfaca00f85f4d6d 108 Gene3D G3DSA:3.30.160.100 1 104 5.3E-35 T 12-10-2018 IPR036567 Ribosome hibernation promotion factor-like ALFP_3236 38b2b2b981ad7a254bfaca00f85f4d6d 108 SUPERFAMILY SSF69754 3 101 9.29E-35 T 12-10-2018 IPR036567 Ribosome hibernation promotion factor-like ALFP_0580 d1fa78bf4fab3ef2b3472357bacf3d59 140 Gene3D G3DSA:3.30.300.20 14 139 4.3E-35 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta ALFP_0580 d1fa78bf4fab3ef2b3472357bacf3d59 140 Pfam PF02566 OsmC-like protein 35 133 7.5E-18 T 12-10-2018 IPR003718 OsmC/Ohr family ALFP_0580 d1fa78bf4fab3ef2b3472357bacf3d59 140 SUPERFAMILY SSF82784 1 136 2.36E-38 T 12-10-2018 IPR036102 OsmC/Ohr superfamily ALFP_2590 dc711242f68686a67a125e32b3b68820 119 Gene3D G3DSA:1.20.58.1610 1 119 2.5E-44 T 12-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2590 dc711242f68686a67a125e32b3b68820 119 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 2 119 19.913 T 12-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 ALFP_2590 dc711242f68686a67a125e32b3b68820 119 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 22 118 8.1E-39 T 12-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_3613 792f75b3952f3024c830a0ecd8e2d7dc 128 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 27.195 T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3613 792f75b3952f3024c830a0ecd8e2d7dc 128 Gene3D G3DSA:3.90.1030.10 1 116 6.8E-48 T 12-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3613 792f75b3952f3024c830a0ecd8e2d7dc 128 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 4.9E-46 T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3613 792f75b3952f3024c830a0ecd8e2d7dc 128 SUPERFAMILY SSF64263 1 119 1.15E-51 T 12-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3613 792f75b3952f3024c830a0ecd8e2d7dc 128 Pfam PF01196 Ribosomal protein L17 20 116 1.2E-35 T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_3613 792f75b3952f3024c830a0ecd8e2d7dc 128 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 ALFP_1175 04a17cbf98cb902dcc85bd6d3d0da36c 369 Gene3D G3DSA:3.90.1580.10 53 369 6.1E-94 T 12-10-2018 ALFP_1175 04a17cbf98cb902dcc85bd6d3d0da36c 369 SUPERFAMILY SSF56436 64 365 2.45E-84 T 12-10-2018 IPR016187 C-type lectin fold ALFP_1175 04a17cbf98cb902dcc85bd6d3d0da36c 369 Pfam PF03781 Sulfatase-modifying factor enzyme 1 64 363 4.1E-78 T 12-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 ALFP_0800 ca95d4e8152bf966e3f36a0b87131788 160 Pfam PF05258 Protein of unknown function (DUF721) 33 98 2.2E-8 T 12-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 ALFP_2676 0f582982fd2f8a3cda0dec15109758d5 550 SUPERFAMILY SSF103473 22 528 2.35E-18 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2676 0f582982fd2f8a3cda0dec15109758d5 550 Gene3D G3DSA:1.20.1250.20 29 216 3.0E-12 T 12-10-2018 ALFP_2676 0f582982fd2f8a3cda0dec15109758d5 550 Pfam PF07690 Major Facilitator Superfamily 41 436 2.3E-14 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_0506 7b34f3452c9c3d4c5f57c7aadfd81ad9 157 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 11 144 8.7E-13 T 12-10-2018 IPR009936 Protein of unknown function DUF1468 ALFP_0305 99d91bbcf2276455b82d82a19f812cf1 259 SUPERFAMILY SSF53474 12 253 1.56E-30 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0305 99d91bbcf2276455b82d82a19f812cf1 259 Gene3D G3DSA:3.40.50.1820 10 256 1.6E-34 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2918 f776de47d5d18c797b6eb195ff9aac18 259 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_2918 f776de47d5d18c797b6eb195ff9aac18 259 SUPERFAMILY SSF52540 21 256 3.34E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2918 f776de47d5d18c797b6eb195ff9aac18 259 Gene3D G3DSA:3.40.50.300 18 259 1.0E-58 T 12-10-2018 ALFP_2918 f776de47d5d18c797b6eb195ff9aac18 259 SMART SM00382 47 238 4.1E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_2918 f776de47d5d18c797b6eb195ff9aac18 259 Pfam PF00005 ABC transporter 40 187 8.8E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2251 74e3c4e2b93795055e471bc42e92c34b 108 Pfam PF00085 Thioredoxin 5 105 4.1E-35 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 ALFP_2251 74e3c4e2b93795055e471bc42e92c34b 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 106 4.5E-38 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 ALFP_2251 74e3c4e2b93795055e471bc42e92c34b 108 Gene3D G3DSA:3.40.30.10 1 107 7.2E-36 T 12-10-2018 ALFP_2251 74e3c4e2b93795055e471bc42e92c34b 108 SUPERFAMILY SSF52833 2 107 2.76E-40 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_2251 74e3c4e2b93795055e471bc42e92c34b 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 ALFP_2251 74e3c4e2b93795055e471bc42e92c34b 108 PRINTS PR00421 Thioredoxin family signature 24 32 7.1E-10 T 12-10-2018 ALFP_2251 74e3c4e2b93795055e471bc42e92c34b 108 PRINTS PR00421 Thioredoxin family signature 72 83 7.1E-10 T 12-10-2018 ALFP_2251 74e3c4e2b93795055e471bc42e92c34b 108 PRINTS PR00421 Thioredoxin family signature 32 41 7.1E-10 T 12-10-2018 ALFP_2251 74e3c4e2b93795055e471bc42e92c34b 108 PIRSF PIRSF000077 2 108 4.8E-44 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 ALFP_1057 2acc6ba6501c745df044e37d0186254a 295 Pfam PF05368 NmrA-like family 8 230 1.7E-49 T 12-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 ALFP_1057 2acc6ba6501c745df044e37d0186254a 295 Gene3D G3DSA:3.40.50.720 8 271 1.1E-68 T 12-10-2018 ALFP_1057 2acc6ba6501c745df044e37d0186254a 295 SUPERFAMILY SSF51735 7 253 6.42E-55 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1057 2acc6ba6501c745df044e37d0186254a 295 Gene3D G3DSA:3.90.25.10 149 278 1.1E-68 T 12-10-2018 ALFP_2879 a5061c880a35ee99ef319717e1032f91 332 Pfam PF00990 Diguanylate cyclase, GGDEF domain 176 326 4.3E-42 T 12-10-2018 IPR000160 GGDEF domain ALFP_2879 a5061c880a35ee99ef319717e1032f91 332 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 171 329 4.4E-45 T 12-10-2018 IPR000160 GGDEF domain ALFP_2879 a5061c880a35ee99ef319717e1032f91 332 SUPERFAMILY SSF55073 179 329 1.41E-41 T 12-10-2018 IPR029787 Nucleotide cyclase ALFP_2879 a5061c880a35ee99ef319717e1032f91 332 Gene3D G3DSA:3.30.70.270 173 332 3.6E-49 T 12-10-2018 ALFP_2879 a5061c880a35ee99ef319717e1032f91 332 SMART SM00267 163 330 4.7E-51 T 12-10-2018 IPR000160 GGDEF domain ALFP_2890 2b87ff655e34cd784fbe31588f2e4cd0 266 Gene3D G3DSA:3.30.450.40 90 264 1.7E-52 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_2890 2b87ff655e34cd784fbe31588f2e4cd0 266 SUPERFAMILY SSF55781 85 264 1.72E-47 T 12-10-2018 ALFP_2890 2b87ff655e34cd784fbe31588f2e4cd0 266 Pfam PF01614 Bacterial transcriptional regulator 137 260 1.0E-29 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal ALFP_2890 2b87ff655e34cd784fbe31588f2e4cd0 266 Pfam PF09339 IclR helix-turn-helix domain 23 74 6.2E-14 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_2890 2b87ff655e34cd784fbe31588f2e4cd0 266 SMART SM00346 21 109 4.4E-28 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ALFP_2890 2b87ff655e34cd784fbe31588f2e4cd0 266 SUPERFAMILY SSF46785 21 92 3.01E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2890 2b87ff655e34cd784fbe31588f2e4cd0 266 Gene3D G3DSA:1.10.10.10 14 89 1.4E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0054 46aa16c55167b322fc0c977091fefa64 552 Gene3D G3DSA:1.10.3720.10 295 547 2.5E-33 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0054 46aa16c55167b322fc0c977091fefa64 552 SUPERFAMILY SSF161098 304 540 1.87E-33 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0054 46aa16c55167b322fc0c977091fefa64 552 SUPERFAMILY SSF161098 21 268 3.38E-49 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0054 46aa16c55167b322fc0c977091fefa64 552 Gene3D G3DSA:1.10.3720.10 11 282 2.2E-60 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0054 46aa16c55167b322fc0c977091fefa64 552 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 274 2.0E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0539 cc9ed13f715b73469a85bf5e97d7f63b 370 Pfam PF01070 FMN-dependent dehydrogenase 26 367 1.5E-123 T 12-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 ALFP_0539 cc9ed13f715b73469a85bf5e97d7f63b 370 PIRSF PIRSF000138 7 370 1.6E-120 T 12-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 ALFP_0539 cc9ed13f715b73469a85bf5e97d7f63b 370 Gene3D G3DSA:3.20.20.70 14 370 2.8E-129 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0539 cc9ed13f715b73469a85bf5e97d7f63b 370 SUPERFAMILY SSF51395 16 367 2.81E-91 T 12-10-2018 ALFP_2602 73a217ba03a873d74e6b5b405ca5c1ec 573 Gene3D G3DSA:3.40.50.970 365 570 1.4E-61 T 12-10-2018 ALFP_2602 73a217ba03a873d74e6b5b405ca5c1ec 573 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 567 4.8E-241 T 12-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 ALFP_2602 73a217ba03a873d74e6b5b405ca5c1ec 573 Gene3D G3DSA:3.40.50.970 1 182 7.0E-70 T 12-10-2018 ALFP_2602 73a217ba03a873d74e6b5b405ca5c1ec 573 SUPERFAMILY SSF52518 373 569 9.4E-65 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_2602 73a217ba03a873d74e6b5b405ca5c1ec 573 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 195 329 6.0E-43 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 ALFP_2602 73a217ba03a873d74e6b5b405ca5c1ec 573 SUPERFAMILY SSF52518 3 175 2.1E-61 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_2602 73a217ba03a873d74e6b5b405ca5c1ec 573 Gene3D G3DSA:3.40.50.1220 189 361 4.4E-60 T 12-10-2018 ALFP_2602 73a217ba03a873d74e6b5b405ca5c1ec 573 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 170 3.3E-58 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 ALFP_2602 73a217ba03a873d74e6b5b405ca5c1ec 573 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 395 543 3.4E-47 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 ALFP_2602 73a217ba03a873d74e6b5b405ca5c1ec 573 SUPERFAMILY SSF52467 188 362 3.96E-61 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily ALFP_0125 2d943a0c878a39da4e36aaf0e33a57ff 173 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 39 170 7.6E-28 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_2199 1185e63d5504141448d28818d61c97e2 386 Gene3D G3DSA:1.20.1250.20 194 382 3.1E-16 T 12-10-2018 ALFP_2199 1185e63d5504141448d28818d61c97e2 386 SUPERFAMILY SSF103473 2 381 1.96E-39 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2199 1185e63d5504141448d28818d61c97e2 386 Gene3D G3DSA:1.20.1250.20 1 183 8.7E-11 T 12-10-2018 ALFP_2199 1185e63d5504141448d28818d61c97e2 386 Pfam PF07690 Major Facilitator Superfamily 19 340 1.3E-18 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_3374 88937bf470548f8c17ee2249744ebea0 361 Pfam PF13524 Glycosyl transferases group 1 265 356 1.3E-10 T 12-10-2018 ALFP_0267 2cd9ec39aac2e2563e80f57dea4b4b4f 60 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 13 46 4.9E-8 T 12-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 ALFP_2499 68187f9ba0a6507426a61ad676fca0b5 548 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 444 546 6.8E-49 T 12-10-2018 ALFP_2499 68187f9ba0a6507426a61ad676fca0b5 548 Gene3D G3DSA:3.50.50.60 8 385 8.4E-198 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2499 68187f9ba0a6507426a61ad676fca0b5 548 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 179 194 1.8E-5 T 12-10-2018 ALFP_2499 68187f9ba0a6507426a61ad676fca0b5 548 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 10 32 1.8E-5 T 12-10-2018 ALFP_2499 68187f9ba0a6507426a61ad676fca0b5 548 SUPERFAMILY SSF54373 212 306 1.33E-36 T 12-10-2018 ALFP_2499 68187f9ba0a6507426a61ad676fca0b5 548 Gene3D G3DSA:3.30.9.90 80 448 8.4E-198 T 12-10-2018 ALFP_2499 68187f9ba0a6507426a61ad676fca0b5 548 SUPERFAMILY SSF51905 3 446 2.88E-55 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2499 68187f9ba0a6507426a61ad676fca0b5 548 Gene3D G3DSA:3.30.70.20 449 543 7.5E-39 T 12-10-2018 ALFP_2499 68187f9ba0a6507426a61ad676fca0b5 548 Pfam PF13450 NAD(P)-binding Rossmann-like domain 13 60 4.8E-7 T 12-10-2018 ALFP_2499 68187f9ba0a6507426a61ad676fca0b5 548 SUPERFAMILY SSF54862 448 546 2.55E-27 T 12-10-2018 ALFP_1576 c3a6945e6b4d6ca55437f2f1f1343576 206 Gene3D G3DSA:1.20.1050.10 84 201 1.4E-44 T 12-10-2018 ALFP_1576 c3a6945e6b4d6ca55437f2f1f1343576 206 SUPERFAMILY SSF47616 80 203 1.67E-28 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily ALFP_1576 c3a6945e6b4d6ca55437f2f1f1343576 206 Pfam PF00043 Glutathione S-transferase, C-terminal domain 113 196 1.3E-4 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal ALFP_1576 c3a6945e6b4d6ca55437f2f1f1343576 206 Pfam PF13417 Glutathione S-transferase, N-terminal domain 8 77 3.3E-12 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 ALFP_1576 c3a6945e6b4d6ca55437f2f1f1343576 206 Gene3D G3DSA:3.40.30.10 1 83 1.5E-32 T 12-10-2018 ALFP_1576 c3a6945e6b4d6ca55437f2f1f1343576 206 SUPERFAMILY SSF52833 1 85 1.66E-22 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_1206 caf486d1da5071a374f321552f955bc1 261 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 4.9E-113 T 12-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 ALFP_1206 caf486d1da5071a374f321552f955bc1 261 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 183 261 1.5E-22 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain ALFP_1206 caf486d1da5071a374f321552f955bc1 261 Pfam PF00460 Flagella basal body rod protein 5 35 7.7E-15 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 ALFP_1206 caf486d1da5071a374f321552f955bc1 261 SUPERFAMILY SSF117143 92 223 9.55E-34 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like ALFP_1206 caf486d1da5071a374f321552f955bc1 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 148 244 7.5E-29 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G ALFP_1206 caf486d1da5071a374f321552f955bc1 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 9.3E-49 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G ALFP_1206 caf486d1da5071a374f321552f955bc1 261 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site ALFP_1344 7c1e7785f92d5f5f6884cfde5e6c4c16 275 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_1344 7c1e7785f92d5f5f6884cfde5e6c4c16 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.4E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1344 7c1e7785f92d5f5f6884cfde5e6c4c16 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.4E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1344 7c1e7785f92d5f5f6884cfde5e6c4c16 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 1.4E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1344 7c1e7785f92d5f5f6884cfde5e6c4c16 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 1.4E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1344 7c1e7785f92d5f5f6884cfde5e6c4c16 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.4E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1344 7c1e7785f92d5f5f6884cfde5e6c4c16 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.4E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1344 7c1e7785f92d5f5f6884cfde5e6c4c16 275 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 251 5.4E-54 T 12-10-2018 ALFP_1344 7c1e7785f92d5f5f6884cfde5e6c4c16 275 SUPERFAMILY SSF51735 10 252 7.7E-69 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1344 7c1e7785f92d5f5f6884cfde5e6c4c16 275 Gene3D G3DSA:3.40.50.720 2 269 2.2E-71 T 12-10-2018 ALFP_1344 7c1e7785f92d5f5f6884cfde5e6c4c16 275 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.3E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1344 7c1e7785f92d5f5f6884cfde5e6c4c16 275 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 1.3E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1344 7c1e7785f92d5f5f6884cfde5e6c4c16 275 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.3E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2452 baf725b7d617158893771bcdad1d50d1 100 Gene3D G3DSA:3.40.1260.10 3 100 4.2E-11 T 12-10-2018 IPR027396 DsrEFH-like ALFP_2452 baf725b7d617158893771bcdad1d50d1 100 SUPERFAMILY SSF75169 4 99 9.89E-12 T 12-10-2018 IPR027396 DsrEFH-like ALFP_1691 a0ded2a685dca31e56101439d397cd0d 295 Pfam PF00294 pfkB family carbohydrate kinase 7 275 1.2E-42 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB ALFP_1691 a0ded2a685dca31e56101439d397cd0d 295 SUPERFAMILY SSF53613 8 278 2.03E-49 T 12-10-2018 IPR029056 Ribokinase-like ALFP_1691 a0ded2a685dca31e56101439d397cd0d 295 Gene3D G3DSA:3.40.1190.20 1 285 3.3E-53 T 12-10-2018 IPR029056 Ribokinase-like ALFP_1691 a0ded2a685dca31e56101439d397cd0d 295 PRINTS PR00990 Ribokinase signature 16 35 6.7E-5 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 ALFP_1691 a0ded2a685dca31e56101439d397cd0d 295 PRINTS PR00990 Ribokinase signature 88 101 6.7E-5 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 ALFP_1691 a0ded2a685dca31e56101439d397cd0d 295 PRINTS PR00990 Ribokinase signature 207 218 6.7E-5 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 ALFP_1691 a0ded2a685dca31e56101439d397cd0d 295 PRINTS PR00990 Ribokinase signature 157 172 6.7E-5 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 ALFP_1830 d7a7aa9c99b7b23b3c73a15f0a54a045 430 SUPERFAMILY SSF56672 23 164 1.09E-11 T 12-10-2018 ALFP_1142 5bc3871c29fb7436eb7c5cbe298a0af6 316 Pfam PF00534 Glycosyl transferases group 1 136 290 1.2E-24 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 ALFP_1142 5bc3871c29fb7436eb7c5cbe298a0af6 316 Pfam PF13439 Glycosyltransferase Family 4 8 112 2.5E-15 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 ALFP_1142 5bc3871c29fb7436eb7c5cbe298a0af6 316 Gene3D G3DSA:3.40.50.2000 109 297 2.7E-46 T 12-10-2018 ALFP_1142 5bc3871c29fb7436eb7c5cbe298a0af6 316 SUPERFAMILY SSF53756 9 310 6.28E-52 T 12-10-2018 ALFP_1142 5bc3871c29fb7436eb7c5cbe298a0af6 316 Gene3D G3DSA:3.40.50.2000 13 310 2.7E-46 T 12-10-2018 ALFP_1948 9d2e5687c9e5229b75b3e1d6237dfec3 375 Gene3D G3DSA:3.90.226.10 3 375 7.4E-124 T 12-10-2018 ALFP_1948 9d2e5687c9e5229b75b3e1d6237dfec3 375 Pfam PF16113 Enoyl-CoA hydratase/isomerase 18 360 5.2E-116 T 12-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 ALFP_1948 9d2e5687c9e5229b75b3e1d6237dfec3 375 SUPERFAMILY SSF52096 16 346 1.96E-60 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_0184 fa8a35e57534db9cf1d3bb9ec4d70de5 163 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 23 153 2.9E-25 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_0077 a0ba33bf644bae66b128ca14308d01fe 160 SUPERFAMILY SSF54427 2 160 2.4E-46 T 12-10-2018 IPR032710 NTF2-like domain superfamily ALFP_0077 a0ba33bf644bae66b128ca14308d01fe 160 Gene3D G3DSA:3.10.450.50 2 160 1.4E-46 T 12-10-2018 ALFP_0077 a0ba33bf644bae66b128ca14308d01fe 160 Pfam PF00866 Ring hydroxylating beta subunit 16 149 1.9E-30 T 12-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 ALFP_1665 3de2419093e032650f14577da2f39955 90 SUPERFAMILY SSF56029 3 89 8.76E-30 T 12-10-2018 IPR036889 Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 ALFP_1665 3de2419093e032650f14577da2f39955 90 Pfam PF02406 MmoB/DmpM family 4 86 8.0E-29 T 12-10-2018 IPR003454 Monooxygenase component MmoB/DmpM GO:0004497|GO:0006725 ALFP_1665 3de2419093e032650f14577da2f39955 90 ProDom PD004249 MONOOXYGENASE COMPONENT HYDROXYLASE MMOB/DMPM PHENOL SUBUNIT 3D-STRUCTURE HYDROCARBONS IRON PHENOLHYDROXYLASE 9 88 7.0E-28 T 12-10-2018 IPR003454 Monooxygenase component MmoB/DmpM GO:0004497|GO:0006725 ALFP_1665 3de2419093e032650f14577da2f39955 90 Gene3D G3DSA:3.90.56.10 1 90 2.9E-36 T 12-10-2018 IPR036889 Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 ALFP_2018 d29092dfbdaa03cd88873bbe438617c0 114 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 6 108 1.2E-10 T 12-10-2018 IPR008407 Branched-chain amino acid transport, AzlD ALFP_1402 f2b8d5d5d35b4840c0aff9b6d53136ee 517 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 3 508 4.8E-136 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ ALFP_1402 f2b8d5d5d35b4840c0aff9b6d53136ee 517 Pfam PF03023 MviN-like protein 28 472 3.3E-129 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ ALFP_1402 f2b8d5d5d35b4840c0aff9b6d53136ee 517 PIRSF PIRSF002869 1 517 4.8E-150 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ ALFP_1402 f2b8d5d5d35b4840c0aff9b6d53136ee 517 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 3 473 19.638 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ ALFP_1402 f2b8d5d5d35b4840c0aff9b6d53136ee 517 PRINTS PR01806 Virulence factor MviN signature 265 291 2.2E-77 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ ALFP_1402 f2b8d5d5d35b4840c0aff9b6d53136ee 517 PRINTS PR01806 Virulence factor MviN signature 363 382 2.2E-77 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ ALFP_1402 f2b8d5d5d35b4840c0aff9b6d53136ee 517 PRINTS PR01806 Virulence factor MviN signature 33 52 2.2E-77 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ ALFP_1402 f2b8d5d5d35b4840c0aff9b6d53136ee 517 PRINTS PR01806 Virulence factor MviN signature 135 159 2.2E-77 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ ALFP_1402 f2b8d5d5d35b4840c0aff9b6d53136ee 517 PRINTS PR01806 Virulence factor MviN signature 415 432 2.2E-77 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ ALFP_1402 f2b8d5d5d35b4840c0aff9b6d53136ee 517 PRINTS PR01806 Virulence factor MviN signature 52 68 2.2E-77 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ ALFP_1402 f2b8d5d5d35b4840c0aff9b6d53136ee 517 PRINTS PR01806 Virulence factor MviN signature 159 180 2.2E-77 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ ALFP_2530 4615368401cd430ff390902a2220d9a9 325 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 236 324 1.5E-34 T 12-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 ALFP_2530 4615368401cd430ff390902a2220d9a9 325 SUPERFAMILY SSF53901 5 325 1.6E-68 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2530 4615368401cd430ff390902a2220d9a9 325 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 5 324 3.1E-123 T 12-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 ALFP_2530 4615368401cd430ff390902a2220d9a9 325 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 113 190 4.6E-34 T 12-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 ALFP_2530 4615368401cd430ff390902a2220d9a9 325 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 3 325 70.089 T 12-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 ALFP_2530 4615368401cd430ff390902a2220d9a9 325 Gene3D G3DSA:3.40.47.10 2 325 2.2E-127 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 ALFP_2491 9da99ea6ab22073135e284ba5bfed9bf 94 Pfam PF07045 Domain of unknown function (DUF1330) 2 94 1.8E-28 T 12-10-2018 IPR010753 Domain of unknown function DUF1330 ALFP_2491 9da99ea6ab22073135e284ba5bfed9bf 94 SUPERFAMILY SSF54909 1 94 5.99E-24 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel ALFP_2491 9da99ea6ab22073135e284ba5bfed9bf 94 Gene3D G3DSA:3.30.70.100 1 94 6.3E-29 T 12-10-2018 ALFP_0637 bddbc0d9dc7612a3236808afd7deadb1 176 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 172 2.0E-50 T 12-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 ALFP_0637 bddbc0d9dc7612a3236808afd7deadb1 176 Gene3D G3DSA:3.40.50.300 1 168 1.4E-32 T 12-10-2018 ALFP_0637 bddbc0d9dc7612a3236808afd7deadb1 176 SUPERFAMILY SSF52540 2 159 4.0E-31 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0637 bddbc0d9dc7612a3236808afd7deadb1 176 Pfam PF00005 ABC transporter 3 127 6.7E-19 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0333 4ba59100241e8b1b393105774e4e5957 455 SUPERFAMILY SSF51338 6 447 2.37E-22 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_0333 4ba59100241e8b1b393105774e4e5957 455 Gene3D G3DSA:2.30.40.10 6 446 2.1E-108 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_0333 4ba59100241e8b1b393105774e4e5957 455 Gene3D G3DSA:3.20.20.140 56 417 2.1E-108 T 12-10-2018 ALFP_0333 4ba59100241e8b1b393105774e4e5957 455 Pfam PF01979 Amidohydrolase family 53 429 2.3E-11 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 ALFP_0333 4ba59100241e8b1b393105774e4e5957 455 SUPERFAMILY SSF51556 56 377 6.54E-67 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_1370 8fa46de10fd2394f9d06b6ebe2990153 271 Gene3D G3DSA:2.40.128.270 48 140 4.8E-13 T 12-10-2018 IPR038670 HslJ-like superfamily ALFP_1370 8fa46de10fd2394f9d06b6ebe2990153 271 Pfam PF14302 Domain of unknown function (DUF4377) 181 266 5.2E-21 T 12-10-2018 IPR025485 Domain of unknown function DUF4377 ALFP_1370 8fa46de10fd2394f9d06b6ebe2990153 271 Pfam PF03724 META domain 41 138 7.8E-16 T 12-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ ALFP_0642 150e845235e792cf5b411a6551430712 655 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 633 5.6E-125 T 12-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal ALFP_0642 150e845235e792cf5b411a6551430712 655 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 54 636 1.5E-223 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0642 150e845235e792cf5b411a6551430712 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 1.6E-89 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0642 150e845235e792cf5b411a6551430712 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 1.6E-89 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0642 150e845235e792cf5b411a6551430712 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 1.6E-89 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0642 150e845235e792cf5b411a6551430712 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 1.6E-89 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0642 150e845235e792cf5b411a6551430712 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 1.6E-89 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0642 150e845235e792cf5b411a6551430712 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 1.6E-89 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0642 150e845235e792cf5b411a6551430712 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 1.6E-89 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0642 150e845235e792cf5b411a6551430712 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 1.6E-89 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0642 150e845235e792cf5b411a6551430712 655 Pfam PF01578 Cytochrome C assembly protein 89 295 8.9E-48 T 12-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 ALFP_0642 150e845235e792cf5b411a6551430712 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 2.8E-52 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0642 150e845235e792cf5b411a6551430712 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 394 413 2.8E-52 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0642 150e845235e792cf5b411a6551430712 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 2.8E-52 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0642 150e845235e792cf5b411a6551430712 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 2.8E-52 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0642 150e845235e792cf5b411a6551430712 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 351 368 2.8E-52 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0642 150e845235e792cf5b411a6551430712 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 626 639 2.8E-52 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0642 150e845235e792cf5b411a6551430712 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 2.8E-52 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 ALFP_0163 75429cc9384dd7367e2ed61a2b8eb5f8 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 2.7E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0163 75429cc9384dd7367e2ed61a2b8eb5f8 294 SUPERFAMILY SSF53850 90 293 5.1E-43 T 12-10-2018 ALFP_0163 75429cc9384dd7367e2ed61a2b8eb5f8 294 SUPERFAMILY SSF46785 2 113 9.76E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0163 75429cc9384dd7367e2ed61a2b8eb5f8 294 Pfam PF03466 LysR substrate binding domain 89 293 1.8E-41 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0163 75429cc9384dd7367e2ed61a2b8eb5f8 294 Gene3D G3DSA:3.40.190.290 93 294 1.6E-40 T 12-10-2018 ALFP_0163 75429cc9384dd7367e2ed61a2b8eb5f8 294 Gene3D G3DSA:1.10.10.10 1 85 6.4E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_3568 6bb4746174556947dd5d3872283d40e7 340 SUPERFAMILY SSF102705 50 94 6.28E-10 T 12-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily ALFP_3568 6bb4746174556947dd5d3872283d40e7 340 Gene3D G3DSA:3.40.1390.30 50 92 2.1E-7 T 12-10-2018 ALFP_3568 6bb4746174556947dd5d3872283d40e7 340 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 50 92 1.3E-7 T 12-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 ALFP_3380 578d04099ad1ee29eb02e03f4b5376bc 662 SUPERFAMILY SSF53756 337 657 9.42E-22 T 12-10-2018 ALFP_3380 578d04099ad1ee29eb02e03f4b5376bc 662 Gene3D G3DSA:3.40.50.2000 487 636 6.5E-33 T 12-10-2018 ALFP_3380 578d04099ad1ee29eb02e03f4b5376bc 662 Pfam PF13692 Glycosyl transferases group 1 502 628 4.4E-7 T 12-10-2018 ALFP_0459 855a3e0b862867a1a4bc6e6feb334736 344 Gene3D G3DSA:2.40.160.10 11 344 1.1E-70 T 12-10-2018 IPR023614 Porin domain superfamily ALFP_0459 855a3e0b862867a1a4bc6e6feb334736 344 SUPERFAMILY SSF56935 22 344 4.71E-69 T 12-10-2018 ALFP_0459 855a3e0b862867a1a4bc6e6feb334736 344 Pfam PF13609 Gram-negative porin 9 326 1.6E-52 T 12-10-2018 ALFP_1388 bcaf251843157e3fb12c561fea7e2aa9 268 SUPERFAMILY SSF161098 7 261 4.77E-48 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1388 bcaf251843157e3fb12c561fea7e2aa9 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 72 262 2.1E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_1388 bcaf251843157e3fb12c561fea7e2aa9 268 Gene3D G3DSA:1.10.3720.10 9 265 2.0E-51 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1976 93b15c1bf2ff38a5bee9196b767ab960 237 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 14 216 1.7E-37 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 ALFP_1976 93b15c1bf2ff38a5bee9196b767ab960 237 Pfam PF01914 MarC family integral membrane protein 14 221 1.6E-39 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 ALFP_1306 64b9c89ec2f4f80d81c63153f33b0caf 216 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 7 149 3.5E-32 T 12-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO ALFP_1306 64b9c89ec2f4f80d81c63153f33b0caf 216 Gene3D G3DSA:1.10.760.10 34 191 1.4E-44 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_1306 64b9c89ec2f4f80d81c63153f33b0caf 216 SUPERFAMILY SSF46626 3 185 3.83E-18 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_3643 8e4ea9595a5d70994d9f7cb90f1428af 441 SUPERFAMILY SSF56935 30 441 2.62E-95 T 12-10-2018 ALFP_3643 8e4ea9595a5d70994d9f7cb90f1428af 441 Gene3D G3DSA:2.40.160.60 30 441 6.9E-139 T 12-10-2018 ALFP_3643 8e4ea9595a5d70994d9f7cb90f1428af 441 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 23 441 5.6E-111 T 12-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) ALFP_1767 8c80391b12ce448ec92b66f3eb79df48 136 Gene3D G3DSA:1.10.3790.10 1 134 1.2E-43 T 12-10-2018 IPR036619 NinB superfamily ALFP_1767 8c80391b12ce448ec92b66f3eb79df48 136 Pfam PF05772 NinB protein 3 128 5.2E-43 T 12-10-2018 IPR008711 Recombinase NinB ALFP_1767 8c80391b12ce448ec92b66f3eb79df48 136 SUPERFAMILY SSF103370 1 128 4.32E-37 T 12-10-2018 IPR036619 NinB superfamily ALFP_3085 cb54e28e2c05ef0ea070d8b5f52c8351 316 Pfam PF02371 Transposase IS116/IS110/IS902 family 189 265 5.0E-20 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 ALFP_3085 cb54e28e2c05ef0ea070d8b5f52c8351 316 Pfam PF01548 Transposase 9 145 5.5E-19 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 ALFP_2550 9119ce6c970b6210097f1c4682c3768e 227 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 129 140 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site ALFP_2550 9119ce6c970b6210097f1c4682c3768e 227 Gene3D G3DSA:3.30.70.20 84 165 7.6E-18 T 12-10-2018 ALFP_2550 9119ce6c970b6210097f1c4682c3768e 227 Gene3D G3DSA:3.20.20.20 19 83 1.6E-11 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 ALFP_2550 9119ce6c970b6210097f1c4682c3768e 227 SUPERFAMILY SSF54862 22 152 2.0E-27 T 12-10-2018 ALFP_2550 9119ce6c970b6210097f1c4682c3768e 227 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 12 156 1.2E-63 T 12-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 ALFP_2550 9119ce6c970b6210097f1c4682c3768e 227 Pfam PF04060 Putative Fe-S cluster 27 59 7.1E-11 T 12-10-2018 IPR007202 4Fe-4S domain GO:0051536 ALFP_2550 9119ce6c970b6210097f1c4682c3768e 227 Pfam PF14697 4Fe-4S dicluster domain 92 146 7.6E-16 T 12-10-2018 ALFP_0161 a89985b5832f03e99b7dff7625682533 333 Gene3D G3DSA:3.40.190.170 21 332 4.4E-78 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_0161 a89985b5832f03e99b7dff7625682533 333 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 42 315 1.5E-58 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_1262 5f8091bfd8d0b5d8db83d5df3df58cf3 79 SUPERFAMILY SSF56349 2 53 8.83E-10 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 ALFP_1262 5f8091bfd8d0b5d8db83d5df3df58cf3 79 Gene3D G3DSA:1.10.443.10 1 63 8.9E-10 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 ALFP_1262 5f8091bfd8d0b5d8db83d5df3df58cf3 79 Pfam PF00589 Phage integrase family 3 46 5.3E-7 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 ALFP_1391 654f10527dcf995e3111ea8580c338f5 51 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 33 51 1.3E-9 T 12-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 ALFP_1391 654f10527dcf995e3111ea8580c338f5 51 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 33 51 6.0E-8 T 12-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 ALFP_0586 bcbbe9e98d4e6550430badb260d36a8f 222 Gene3D G3DSA:1.20.1260.10 62 211 1.1E-7 T 12-10-2018 IPR012347 Ferritin-like ALFP_0586 bcbbe9e98d4e6550430badb260d36a8f 222 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 23 222 30.129 T 12-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 ALFP_0586 bcbbe9e98d4e6550430badb260d36a8f 222 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 62 221 2.4E-42 T 12-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 ALFP_0586 bcbbe9e98d4e6550430badb260d36a8f 222 SUPERFAMILY SSF47240 61 195 1.63E-18 T 12-10-2018 IPR009078 Ferritin-like superfamily ALFP_3163 b231af2c417f3c6c510606bfa844bea9 96 SUPERFAMILY SSF46626 3 92 1.02E-17 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_3163 b231af2c417f3c6c510606bfa844bea9 96 Gene3D G3DSA:1.10.760.10 8 95 1.0E-29 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_3163 b231af2c417f3c6c510606bfa844bea9 96 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 19 91 4.9E-15 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_3163 b231af2c417f3c6c510606bfa844bea9 96 PRINTS PR00607 Class IE cytochrome C signature 27 38 1.6E-12 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 ALFP_3163 b231af2c417f3c6c510606bfa844bea9 96 PRINTS PR00607 Class IE cytochrome C signature 81 92 1.6E-12 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 ALFP_3163 b231af2c417f3c6c510606bfa844bea9 96 PRINTS PR00607 Class IE cytochrome C signature 38 48 1.6E-12 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 ALFP_3163 b231af2c417f3c6c510606bfa844bea9 96 PRINTS PR00607 Class IE cytochrome C signature 66 78 1.6E-12 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 ALFP_1287 c108ec0ce47afe37853eff22a74dc20e 291 SUPERFAMILY SSF103481 42 133 1.57E-12 T 12-10-2018 ALFP_1287 c108ec0ce47afe37853eff22a74dc20e 291 SUPERFAMILY SSF103481 174 273 6.67E-13 T 12-10-2018 ALFP_1287 c108ec0ce47afe37853eff22a74dc20e 291 Pfam PF00892 EamA-like transporter family 5 129 2.1E-14 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_1287 c108ec0ce47afe37853eff22a74dc20e 291 Pfam PF00892 EamA-like transporter family 139 272 3.2E-19 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_3370 26532699ab00fc9a161d8b77938179ac 129 SUPERFAMILY SSF88723 1 122 7.29E-25 T 12-10-2018 IPR029060 PIN-like domain superfamily ALFP_3370 26532699ab00fc9a161d8b77938179ac 129 Pfam PF01850 PIN domain 3 119 4.3E-12 T 12-10-2018 IPR002716 PIN domain ALFP_3370 26532699ab00fc9a161d8b77938179ac 129 Gene3D G3DSA:3.40.50.1010 1 128 1.7E-22 T 12-10-2018 ALFP_0061 363d76ef0eb28690dbd49a853ca64be4 331 Pfam PF06189 5'-nucleotidase 38 307 7.6E-107 T 12-10-2018 IPR010394 5-nucleotidase GO:0000166|GO:0000287|GO:0005737|GO:0008253|GO:0009117 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821|Reactome: R-HSA-74259 ALFP_0170 01d657521e020dfd7f6ad42d1d0b33d8 224 Gene3D G3DSA:1.20.1440.20 35 213 1.5E-55 T 12-10-2018 IPR023353 LemA-like domain superfamily ALFP_0170 01d657521e020dfd7f6ad42d1d0b33d8 224 SUPERFAMILY SSF140478 43 200 1.29E-47 T 12-10-2018 IPR023353 LemA-like domain superfamily ALFP_0170 01d657521e020dfd7f6ad42d1d0b33d8 224 Pfam PF04011 LemA family 29 213 2.6E-57 T 12-10-2018 IPR007156 LemA ALFP_1085 37738d4555f0721f507cdfb270e23df8 222 SUPERFAMILY SSF102405 14 207 1.83E-60 T 12-10-2018 ALFP_1085 37738d4555f0721f507cdfb270e23df8 222 Pfam PF03641 Possible lysine decarboxylase 77 206 3.6E-33 T 12-10-2018 IPR031100 LOG family ALFP_1085 37738d4555f0721f507cdfb270e23df8 222 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 36 207 1.0E-47 T 12-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG ALFP_1085 37738d4555f0721f507cdfb270e23df8 222 Gene3D G3DSA:3.40.50.450 14 211 8.9E-68 T 12-10-2018 ALFP_3096 6416dd2a24d1a44626b57caeb15c98f7 1152 Gene3D G3DSA:3.40.920.10 706 911 5.1E-18 T 12-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 ALFP_3096 6416dd2a24d1a44626b57caeb15c98f7 1152 SUPERFAMILY SSF52518 20 251 1.71E-16 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_3096 6416dd2a24d1a44626b57caeb15c98f7 1152 SUPERFAMILY SSF52518 422 604 5.0E-9 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_3096 6416dd2a24d1a44626b57caeb15c98f7 1152 Gene3D G3DSA:3.40.50.970 7 224 7.0E-25 T 12-10-2018 ALFP_3096 6416dd2a24d1a44626b57caeb15c98f7 1152 SUPERFAMILY SSF53323 710 923 6.54E-22 T 12-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 ALFP_3096 6416dd2a24d1a44626b57caeb15c98f7 1152 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 718 905 1.5E-22 T 12-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 ALFP_0065 4291ec784e07fa168eab805fd6edd276 152 Gene3D G3DSA:1.10.10.10 2 147 2.6E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0065 4291ec784e07fa168eab805fd6edd276 152 SMART SM00347 32 132 3.8E-21 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0065 4291ec784e07fa168eab805fd6edd276 152 SUPERFAMILY SSF46785 6 146 3.58E-29 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0065 4291ec784e07fa168eab805fd6edd276 152 Pfam PF01047 MarR family 39 96 8.0E-15 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_0065 4291ec784e07fa168eab805fd6edd276 152 ProSitePatterns PS01117 MarR-type HTH domain signature. 71 105 - T 12-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site ALFP_1499 09a3933522c1fd4a837c600a3a7c4bfe 424 Pfam PF02687 FtsX-like permease family 310 417 2.0E-15 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 ALFP_1499 09a3933522c1fd4a837c600a3a7c4bfe 424 Pfam PF12704 MacB-like periplasmic core domain 36 252 2.6E-18 T 12-10-2018 IPR025857 MacB-like periplasmic core domain ALFP_1499 09a3933522c1fd4a837c600a3a7c4bfe 424 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 5 423 6.0E-143 T 12-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 ALFP_1826 d9fa9de4d650fc77ca93ecf44f6bdd9b 366 Gene3D G3DSA:3.20.20.70 1 361 9.6E-133 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_1826 d9fa9de4d650fc77ca93ecf44f6bdd9b 366 SUPERFAMILY SSF51395 3 350 2.33E-117 T 12-10-2018 ALFP_1826 d9fa9de4d650fc77ca93ecf44f6bdd9b 366 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 3 328 1.8E-84 T 12-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 ALFP_1617 aa7ba8e32b321eb8724d0337fd19656e 159 SUPERFAMILY SSF48452 23 88 1.54E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_1617 aa7ba8e32b321eb8724d0337fd19656e 159 Gene3D G3DSA:1.25.40.10 4 132 1.5E-7 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_1300 b943087bc062c1acf80672be7b30f9d5 167 PIRSF PIRSF010312 8 167 1.5E-29 T 12-10-2018 IPR016568 Sulphur oxidation, SoxY ALFP_1300 b943087bc062c1acf80672be7b30f9d5 167 Gene3D G3DSA:2.60.40.2470 42 166 2.4E-32 T 12-10-2018 IPR038162 Ig-like SoxY domain superfamily ALFP_1300 b943087bc062c1acf80672be7b30f9d5 167 Pfam PF13501 Sulfur oxidation protein SoxY 58 165 1.4E-26 T 12-10-2018 IPR032711 Ig-like SoxY domain ALFP_2355 d0c1ac02817dd45bfdc7313b879b2dea 83 Gene3D G3DSA:2.10.260.10 1 83 1.4E-6 T 12-10-2018 ALFP_2355 d0c1ac02817dd45bfdc7313b879b2dea 83 SUPERFAMILY SSF89447 1 67 2.79E-7 T 12-10-2018 IPR037914 SpoVT-AbrB domain superfamily ALFP_1904 d60f8442f9645aa9872a83e12b9fa111 141 Pfam PF00582 Universal stress protein family 3 141 4.7E-27 T 12-10-2018 IPR006016 UspA ALFP_1904 d60f8442f9645aa9872a83e12b9fa111 141 Gene3D G3DSA:3.40.50.620 1 141 3.9E-29 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_1904 d60f8442f9645aa9872a83e12b9fa111 141 SUPERFAMILY SSF52402 3 141 1.05E-27 T 12-10-2018 ALFP_1904 d60f8442f9645aa9872a83e12b9fa111 141 PRINTS PR01438 Universal stress protein signature 1 19 7.3E-15 T 12-10-2018 IPR006015 Universal stress protein A ALFP_1904 d60f8442f9645aa9872a83e12b9fa111 141 PRINTS PR01438 Universal stress protein signature 101 113 7.3E-15 T 12-10-2018 IPR006015 Universal stress protein A ALFP_1904 d60f8442f9645aa9872a83e12b9fa111 141 PRINTS PR01438 Universal stress protein signature 119 141 7.3E-15 T 12-10-2018 IPR006015 Universal stress protein A ALFP_2596 9062f4a6ed7e6572948ebfe182075647 563 Gene3D G3DSA:3.10.310.70 84 210 2.3E-110 T 12-10-2018 ALFP_2596 9062f4a6ed7e6572948ebfe182075647 563 SUPERFAMILY SSF51556 65 519 1.76E-33 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_2596 9062f4a6ed7e6572948ebfe182075647 563 Pfam PF07969 Amidohydrolase family 58 559 7.2E-64 T 12-10-2018 IPR013108 Amidohydrolase 3 ALFP_2596 9062f4a6ed7e6572948ebfe182075647 563 Gene3D G3DSA:2.30.40.10 14 536 2.3E-110 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_2596 9062f4a6ed7e6572948ebfe182075647 563 SUPERFAMILY SSF51338 3 561 1.69E-20 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_2596 9062f4a6ed7e6572948ebfe182075647 563 Gene3D G3DSA:3.20.20.140 66 518 2.3E-110 T 12-10-2018 ALFP_1634 3c77e3a9cc7546b1ca54f0689ba2d65f 377 SUPERFAMILY SSF142754 40 350 3.01E-101 T 12-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 ALFP_1634 3c77e3a9cc7546b1ca54f0689ba2d65f 377 Pfam PF02445 Quinolinate synthetase A protein 45 348 1.9E-99 T 12-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 ALFP_1634 3c77e3a9cc7546b1ca54f0689ba2d65f 377 Gene3D G3DSA:3.40.50.10800 211 306 5.2E-92 T 12-10-2018 ALFP_1634 3c77e3a9cc7546b1ca54f0689ba2d65f 377 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 40 350 8.6E-103 T 12-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 ALFP_1634 3c77e3a9cc7546b1ca54f0689ba2d65f 377 Gene3D G3DSA:3.40.50.10800 126 348 5.2E-92 T 12-10-2018 ALFP_1634 3c77e3a9cc7546b1ca54f0689ba2d65f 377 Gene3D G3DSA:3.40.50.10800 44 331 5.2E-92 T 12-10-2018 ALFP_2773 2e1263939ee392e833042ea51e41bf65 321 SUPERFAMILY SSF53067 5 132 2.85E-5 T 12-10-2018 ALFP_2773 2e1263939ee392e833042ea51e41bf65 321 Pfam PF12693 GspL periplasmic domain 166 280 8.2E-10 T 12-10-2018 IPR025691 GspL periplasmic domain ALFP_2416 b01694149a1eb331507c5eca8f58fe71 546 Gene3D G3DSA:3.40.50.970 1 182 1.3E-42 T 12-10-2018 ALFP_2416 b01694149a1eb331507c5eca8f58fe71 546 SUPERFAMILY SSF52467 159 351 3.45E-32 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily ALFP_2416 b01694149a1eb331507c5eca8f58fe71 546 SUPERFAMILY SSF52518 361 530 9.29E-43 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_2416 b01694149a1eb331507c5eca8f58fe71 546 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 324 8.0E-25 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 ALFP_2416 b01694149a1eb331507c5eca8f58fe71 546 Gene3D G3DSA:3.40.50.970 355 534 8.0E-44 T 12-10-2018 ALFP_2416 b01694149a1eb331507c5eca8f58fe71 546 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 176 1.6E-40 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 ALFP_2416 b01694149a1eb331507c5eca8f58fe71 546 SUPERFAMILY SSF52518 2 184 3.48E-38 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold ALFP_2416 b01694149a1eb331507c5eca8f58fe71 546 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 387 527 1.8E-28 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 ALFP_2416 b01694149a1eb331507c5eca8f58fe71 546 Gene3D G3DSA:3.40.50.1220 186 348 1.2E-30 T 12-10-2018 ALFP_2692 b5e831d67ed73322c0a015c12c014558 432 Gene3D G3DSA:3.40.50.2300 164 396 4.9E-92 T 12-10-2018 ALFP_2692 b5e831d67ed73322c0a015c12c014558 432 Gene3D G3DSA:3.40.50.2300 57 387 4.9E-92 T 12-10-2018 ALFP_2692 b5e831d67ed73322c0a015c12c014558 432 Pfam PF13458 Periplasmic binding protein 35 396 1.7E-40 T 12-10-2018 IPR028081 Leucine-binding protein domain ALFP_2692 b5e831d67ed73322c0a015c12c014558 432 SUPERFAMILY SSF53822 35 406 1.41E-59 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_3404 7834e31d3458b3e72f6adb4fa16b3fa9 180 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 24 172 1.0E-18 T 12-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein ALFP_3404 7834e31d3458b3e72f6adb4fa16b3fa9 180 SUPERFAMILY SSF160719 52 163 1.19E-9 T 12-10-2018 ALFP_3404 7834e31d3458b3e72f6adb4fa16b3fa9 180 Pfam PF04965 Gene 25-like lysozyme 49 153 2.2E-20 T 12-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD ALFP_2198 fc2cae2afb28eaf59041fe7e1f82cfb2 371 Pfam PF07690 Major Facilitator Superfamily 1 289 1.4E-32 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_2198 fc2cae2afb28eaf59041fe7e1f82cfb2 371 Gene3D G3DSA:1.20.1250.20 1 190 1.4E-27 T 12-10-2018 ALFP_2198 fc2cae2afb28eaf59041fe7e1f82cfb2 371 SUPERFAMILY SSF103473 1 367 3.92E-53 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2198 fc2cae2afb28eaf59041fe7e1f82cfb2 371 Gene3D G3DSA:1.20.1250.20 191 370 1.7E-15 T 12-10-2018 ALFP_3111 9d1839f2be7af962033b24526d3d3880 289 SUPERFAMILY SSF74653 173 279 7.59E-13 T 12-10-2018 ALFP_3111 9d1839f2be7af962033b24526d3d3880 289 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 201 264 5.6E-7 T 12-10-2018 IPR006260 TonB/TolA, C-terminal ALFP_3111 9d1839f2be7af962033b24526d3d3880 289 Gene3D G3DSA:3.30.1150.10 151 278 5.0E-15 T 12-10-2018 ALFP_3111 9d1839f2be7af962033b24526d3d3880 289 Pfam PF13103 TonB C terminal 188 259 9.5E-7 T 12-10-2018 ALFP_0885 7ce8d607f070cdeaaf87bef24c0cb7d5 800 Pfam PF07715 TonB-dependent Receptor Plug Domain 153 245 3.5E-12 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_0885 7ce8d607f070cdeaaf87bef24c0cb7d5 800 Gene3D G3DSA:3.55.50.30 30 127 3.8E-26 T 12-10-2018 ALFP_0885 7ce8d607f070cdeaaf87bef24c0cb7d5 800 Pfam PF00593 TonB dependent receptor 365 799 1.7E-42 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_0885 7ce8d607f070cdeaaf87bef24c0cb7d5 800 SMART SM00965 59 109 5.6E-17 T 12-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 ALFP_0885 7ce8d607f070cdeaaf87bef24c0cb7d5 800 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 157 800 1.4E-98 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 ALFP_0885 7ce8d607f070cdeaaf87bef24c0cb7d5 800 SUPERFAMILY SSF56935 111 800 4.97E-106 T 12-10-2018 ALFP_0885 7ce8d607f070cdeaaf87bef24c0cb7d5 800 Gene3D G3DSA:2.40.170.20 266 800 6.9E-82 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_0885 7ce8d607f070cdeaaf87bef24c0cb7d5 800 Gene3D G3DSA:2.170.130.10 149 265 5.1E-22 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_0885 7ce8d607f070cdeaaf87bef24c0cb7d5 800 Pfam PF07660 Secretin and TonB N terminus short domain 59 108 2.4E-15 T 12-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 ALFP_0334 915483b570de6d6c47c079a5b2e8f4b4 512 Gene3D G3DSA:2.30.40.10 32 443 4.8E-122 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_0334 915483b570de6d6c47c079a5b2e8f4b4 512 SUPERFAMILY SSF51338 16 469 6.49E-23 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 ALFP_0334 915483b570de6d6c47c079a5b2e8f4b4 512 Pfam PF01979 Amidohydrolase family 67 442 2.6E-49 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 ALFP_0334 915483b570de6d6c47c079a5b2e8f4b4 512 SUPERFAMILY SSF51556 69 395 8.6E-73 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_0334 915483b570de6d6c47c079a5b2e8f4b4 512 Gene3D G3DSA:3.20.20.140 70 395 4.8E-122 T 12-10-2018 ALFP_2699 7ff4f660622ad964f583bdcf72b371c5 110 Pfam PF00355 Rieske [2Fe-2S] domain 9 94 3.4E-18 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ALFP_2699 7ff4f660622ad964f583bdcf72b371c5 110 Gene3D G3DSA:2.102.10.10 3 110 2.5E-34 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_2699 7ff4f660622ad964f583bdcf72b371c5 110 SUPERFAMILY SSF50022 5 107 3.8E-31 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 ALFP_3465 0909b147998ef934e7c080e6cecf719a 430 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 419 1.9E-95 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_3465 0909b147998ef934e7c080e6cecf719a 430 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 19 426 1.6E-98 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_3465 0909b147998ef934e7c080e6cecf719a 430 PIRSF PIRSF006066 2 430 4.6E-95 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_0038 ba60dd6d437fe51226d1e91aea4d8c36 285 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 273 5.5E-43 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_1777 8f008490a7c19b06a2da0695eae1be19 373 Gene3D G3DSA:3.30.420.280 187 369 1.7E-47 T 12-10-2018 ALFP_1777 8f008490a7c19b06a2da0695eae1be19 373 Gene3D G3DSA:3.40.50.300 3 181 4.4E-40 T 12-10-2018 ALFP_1777 8f008490a7c19b06a2da0695eae1be19 373 Pfam PF04466 Phage terminase large subunit 19 178 7.0E-16 T 12-10-2018 IPR035412 Phage terminase large subunit, N-terminal ALFP_1777 8f008490a7c19b06a2da0695eae1be19 373 Pfam PF17288 Terminase RNAseH like domain 211 359 9.4E-14 T 12-10-2018 IPR035413 Phage terminase large subunit, C-terminal ALFP_2261 3f47481ed793117d4b84ebe538b5086e 169 SMART SM00989 102 165 3.0E-6 T 12-10-2018 IPR004096 4-vinyl reductase, 4VR ALFP_2261 3f47481ed793117d4b84ebe538b5086e 169 SUPERFAMILY SSF111126 50 163 6.28E-16 T 12-10-2018 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily ALFP_2261 3f47481ed793117d4b84ebe538b5086e 169 Pfam PF02830 V4R domain 105 164 4.8E-9 T 12-10-2018 IPR004096 4-vinyl reductase, 4VR ALFP_2261 3f47481ed793117d4b84ebe538b5086e 169 Gene3D G3DSA:3.30.1380.20 29 168 5.1E-12 T 12-10-2018 ALFP_0507 2012d0693a134b0fc264b7d7dff90a32 319 SUPERFAMILY SSF53850 81 237 2.61E-6 T 12-10-2018 ALFP_0507 2012d0693a134b0fc264b7d7dff90a32 319 Gene3D G3DSA:3.40.190.10 120 245 5.0E-68 T 12-10-2018 ALFP_0507 2012d0693a134b0fc264b7d7dff90a32 319 PIRSF PIRSF017082 4 319 2.6E-83 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0507 2012d0693a134b0fc264b7d7dff90a32 319 Gene3D G3DSA:3.40.190.150 26 310 5.0E-68 T 12-10-2018 ALFP_0507 2012d0693a134b0fc264b7d7dff90a32 319 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 57 316 2.6E-31 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0441 38ca149e035e61593d7a82007be02780 118 Pfam PF17273 Family of unknown function (DUF5338) 9 74 2.0E-17 T 12-10-2018 IPR035225 Protein of unknown function DUF5338 ALFP_0441 38ca149e035e61593d7a82007be02780 118 ProDom PD031251 TRAK PLASMID ORIT BINDING TRANSFER SYSTEM DNA ORIT-BINDING SEQUENCING DIRECT 9 118 7.0E-14 T 12-10-2018 IPR035225 Protein of unknown function DUF5338 ALFP_2635 b14df89798844910e6adec1d0b7a3fd0 326 Pfam PF00482 Type II secretion system (T2SS), protein F 180 308 3.0E-13 T 12-10-2018 IPR018076 Type II secretion system F domain ALFP_0475 450edaf1806122c5607f3aed1c60ca92 401 Pfam PF02417 Chromate transporter 13 177 2.2E-30 T 12-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 ALFP_0475 450edaf1806122c5607f3aed1c60ca92 401 Pfam PF02417 Chromate transporter 229 393 3.4E-29 T 12-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 ALFP_0475 450edaf1806122c5607f3aed1c60ca92 401 TIGRFAM TIGR00937 2A51: chromate efflux transporter 19 393 1.9E-96 T 12-10-2018 IPR014047 Chromate transporter, long chain ALFP_0475 450edaf1806122c5607f3aed1c60ca92 401 PIRSF PIRSF004810 1 401 7.2E-119 T 12-10-2018 IPR014047 Chromate transporter, long chain ALFP_3378 afedd784d873e7dcd4921e118b11bbd3 274 SUPERFAMILY SSF56059 27 244 2.94E-8 T 12-10-2018 ALFP_3378 afedd784d873e7dcd4921e118b11bbd3 274 Pfam PF14305 TupA-like ATPgrasp 55 262 9.1E-20 T 12-10-2018 IPR029465 TupA-like ATPgrasp protein ALFP_2582 01a281e5ac6751bd0f8b433a58ce1a0e 162 Pfam PF12838 4Fe-4S dicluster domain 62 115 7.6E-12 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ALFP_2582 01a281e5ac6751bd0f8b433a58ce1a0e 162 Gene3D G3DSA:3.30.70.3270 36 161 3.3E-37 T 12-10-2018 ALFP_2582 01a281e5ac6751bd0f8b433a58ce1a0e 162 SUPERFAMILY SSF54862 36 145 9.21E-26 T 12-10-2018 ALFP_2582 01a281e5ac6751bd0f8b433a58ce1a0e 162 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 19 140 5.9E-46 T 12-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2582 01a281e5ac6751bd0f8b433a58ce1a0e 162 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 102 113 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site ALFP_2582 01a281e5ac6751bd0f8b433a58ce1a0e 162 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 10 159 27.689 T 12-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_0871 019818cff4d7372607ba985f295143c9 249 Gene3D G3DSA:3.40.190.10 26 246 5.3E-72 T 12-10-2018 ALFP_0871 019818cff4d7372607ba985f295143c9 249 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 29 245 1.0E-59 T 12-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 ALFP_0871 019818cff4d7372607ba985f295143c9 249 Gene3D G3DSA:3.40.190.10 103 209 5.3E-72 T 12-10-2018 ALFP_0871 019818cff4d7372607ba985f295143c9 249 PIRSF PIRSF004846 1 249 1.3E-73 T 12-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 ALFP_0871 019818cff4d7372607ba985f295143c9 249 SUPERFAMILY SSF53850 22 248 1.38E-66 T 12-10-2018 ALFP_0871 019818cff4d7372607ba985f295143c9 249 Pfam PF13531 Bacterial extracellular solute-binding protein 24 246 3.1E-51 T 12-10-2018 ALFP_3692 e8e6c18478e686a21d370fe8fb83ecc7 223 Pfam PF02527 rRNA small subunit methyltransferase G 26 214 4.9E-45 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 ALFP_3692 e8e6c18478e686a21d370fe8fb83ecc7 223 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 29 219 6.9E-44 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 ALFP_3692 e8e6c18478e686a21d370fe8fb83ecc7 223 PIRSF PIRSF003078 1 222 2.4E-48 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 ALFP_3692 e8e6c18478e686a21d370fe8fb83ecc7 223 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 17 218 23.91 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 ALFP_3692 e8e6c18478e686a21d370fe8fb83ecc7 223 SUPERFAMILY SSF53335 7 220 3.13E-35 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_3692 e8e6c18478e686a21d370fe8fb83ecc7 223 Gene3D G3DSA:3.40.50.150 1 223 5.3E-60 T 12-10-2018 ALFP_2665 6a3ba9fb41cd4ae214fe0fac3b749cf1 241 SUPERFAMILY SSF53474 8 231 1.35E-34 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2665 6a3ba9fb41cd4ae214fe0fac3b749cf1 241 Gene3D G3DSA:3.40.50.1820 2 233 6.4E-35 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2665 6a3ba9fb41cd4ae214fe0fac3b749cf1 241 Pfam PF12697 Alpha/beta hydrolase family 12 225 1.7E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_2940 f2f8b0b2f5d56322991f7fd91dffcc02 253 Gene3D G3DSA:1.10.3720.10 54 249 6.1E-20 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2940 f2f8b0b2f5d56322991f7fd91dffcc02 253 SUPERFAMILY SSF161098 55 240 1.06E-25 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2940 f2f8b0b2f5d56322991f7fd91dffcc02 253 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 247 9.0E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_0139 eca1d9c89df1df87423bdbd3c6f53b51 622 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 25 600 6.2E-245 T 12-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 ALFP_0139 eca1d9c89df1df87423bdbd3c6f53b51 622 PIRSF PIRSF000719 16 609 1.1E-219 T 12-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 ALFP_0139 eca1d9c89df1df87423bdbd3c6f53b51 622 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 17 604 43.344 T 12-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 ALFP_0139 eca1d9c89df1df87423bdbd3c6f53b51 622 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 23 602 0.0 T 12-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 ALFP_1651 4489397c9a97d97f2c5d3973168c644e 134 Gene3D G3DSA:3.30.1330.40 2 134 5.2E-28 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_1651 4489397c9a97d97f2c5d3973168c644e 134 SUPERFAMILY SSF55298 4 133 3.61E-24 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_1651 4489397c9a97d97f2c5d3973168c644e 134 Pfam PF01042 Endoribonuclease L-PSP 19 132 1.6E-17 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 ALFP_2850 59f3eb45430d7e49a8b301ea233e8c73 145 Pfam PF03061 Thioesterase superfamily 57 116 7.3E-10 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 ALFP_2850 59f3eb45430d7e49a8b301ea233e8c73 145 SUPERFAMILY SSF54637 11 140 8.06E-22 T 12-10-2018 IPR029069 HotDog domain superfamily ALFP_2850 59f3eb45430d7e49a8b301ea233e8c73 145 Gene3D G3DSA:3.10.129.10 16 145 1.3E-32 T 12-10-2018 ALFP_2849 7b9e1ab30745853aa18c31b3817381f2 163 Pfam PF04314 Copper chaperone PCu(A)C 45 150 1.2E-27 T 12-10-2018 IPR007410 Copper chaperone PCuAC ALFP_2849 7b9e1ab30745853aa18c31b3817381f2 163 Gene3D G3DSA:2.60.40.1890 48 160 1.4E-29 T 12-10-2018 IPR036182 Copper chaperone PCuAC superfamily ALFP_2849 7b9e1ab30745853aa18c31b3817381f2 163 SUPERFAMILY SSF110087 42 157 3.53E-30 T 12-10-2018 IPR036182 Copper chaperone PCuAC superfamily ALFP_0526 d76c4ed4a4c2cb46c37ca6b0a1b25039 486 Gene3D G3DSA:1.20.1720.10 1 223 1.9E-42 T 12-10-2018 ALFP_0526 d76c4ed4a4c2cb46c37ca6b0a1b25039 486 SUPERFAMILY SSF103473 2 474 1.22E-65 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_0526 d76c4ed4a4c2cb46c37ca6b0a1b25039 486 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 1 467 2.6E-83 T 12-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 ALFP_0526 d76c4ed4a4c2cb46c37ca6b0a1b25039 486 Gene3D G3DSA:1.20.1250.20 244 479 4.1E-30 T 12-10-2018 ALFP_0526 d76c4ed4a4c2cb46c37ca6b0a1b25039 486 Pfam PF07690 Major Facilitator Superfamily 2 387 4.2E-49 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_3265 16dd5a298d489238d09692c8900ee345 163 SUPERFAMILY SSF52121 12 155 2.09E-45 T 12-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 ALFP_3265 16dd5a298d489238d09692c8900ee345 163 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 151 1.4E-36 T 12-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 ALFP_3265 16dd5a298d489238d09692c8900ee345 163 Gene3D G3DSA:3.40.50.960 5 158 3.2E-49 T 12-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 ALFP_3265 16dd5a298d489238d09692c8900ee345 163 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 7 155 22.591 T 12-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 ALFP_0433 ff49c8ac73610c59b9e5c35b3c9df2bc 126 Pfam PF07883 Cupin domain 46 113 2.5E-16 T 12-10-2018 IPR013096 Cupin 2, conserved barrel ALFP_0433 ff49c8ac73610c59b9e5c35b3c9df2bc 126 Gene3D G3DSA:2.60.120.10 1 125 4.1E-24 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_0433 ff49c8ac73610c59b9e5c35b3c9df2bc 126 SUPERFAMILY SSF51182 3 118 5.8E-27 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_1492 1a4e883bd23d1cc9960476f7d3efcce6 573 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 463 492 1.1E-34 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1492 1a4e883bd23d1cc9960476f7d3efcce6 573 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 415 444 1.1E-34 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1492 1a4e883bd23d1cc9960476f7d3efcce6 573 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 309 338 1.1E-34 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1492 1a4e883bd23d1cc9960476f7d3efcce6 573 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 386 413 1.1E-34 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 ALFP_1492 1a4e883bd23d1cc9960476f7d3efcce6 573 SMART SM00283 288 535 1.6E-54 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 ALFP_1492 1a4e883bd23d1cc9960476f7d3efcce6 573 SUPERFAMILY SSF58104 256 536 2.22E-57 T 12-10-2018 ALFP_1492 1a4e883bd23d1cc9960476f7d3efcce6 573 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 347 501 1.7E-37 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 ALFP_1492 1a4e883bd23d1cc9960476f7d3efcce6 573 Gene3D G3DSA:1.10.287.950 234 537 1.0E-68 T 12-10-2018 ALFP_1492 1a4e883bd23d1cc9960476f7d3efcce6 573 SMART SM00304 235 287 0.0066 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 ALFP_1492 1a4e883bd23d1cc9960476f7d3efcce6 573 SMART SM00304 290 340 98.0 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 ALFP_1004 ae6429ba13efe9a5876bd4be357a625c 205 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 10 186 29.975 T 12-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 ALFP_1004 ae6429ba13efe9a5876bd4be357a625c 205 SUPERFAMILY SSF50486 7 188 3.92E-57 T 12-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 ALFP_1004 ae6429ba13efe9a5876bd4be357a625c 205 Gene3D G3DSA:3.10.300.10 3 197 4.6E-57 T 12-10-2018 IPR036995 Methylpurine-DNA glycosylase superfamily GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 ALFP_1004 ae6429ba13efe9a5876bd4be357a625c 205 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 12 183 3.1E-51 T 12-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 ALFP_1004 ae6429ba13efe9a5876bd4be357a625c 205 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 8 186 1.0E-48 T 12-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 ALFP_0128 46873b267b84d6b93f554af8f652fedc 326 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 35 312 3.3E-82 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_0128 46873b267b84d6b93f554af8f652fedc 326 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 35 285 6.5E-67 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 ALFP_0128 46873b267b84d6b93f554af8f652fedc 326 PIRSF PIRSF006470 1 326 3.6E-94 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 ALFP_0128 46873b267b84d6b93f554af8f652fedc 326 Gene3D G3DSA:3.40.190.170 27 326 2.3E-106 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_0128 46873b267b84d6b93f554af8f652fedc 326 SUPERFAMILY SSF53850 30 291 2.17E-5 T 12-10-2018 ALFP_2953 f5a50c7b8df965514a14cb0f5f7b16ef 350 SUPERFAMILY SSF144052 139 340 6.28E-15 T 12-10-2018 ALFP_1477 b964035a7fa2d4285d89d04072181d96 186 Pfam PF13302 Acetyltransferase (GNAT) domain 11 152 3.3E-34 T 12-10-2018 IPR000182 GNAT domain ALFP_1477 b964035a7fa2d4285d89d04072181d96 186 SUPERFAMILY SSF55729 3 155 1.04E-41 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_1477 b964035a7fa2d4285d89d04072181d96 186 Gene3D G3DSA:3.40.630.30 2 160 3.5E-46 T 12-10-2018 ALFP_1097 e931ce51a193ea5adb6622f8eb742e0c 302 SUPERFAMILY SSF48576 5 287 6.78E-80 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily ALFP_1097 e931ce51a193ea5adb6622f8eb742e0c 302 Gene3D G3DSA:1.10.600.10 4 302 2.9E-91 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily ALFP_1097 e931ce51a193ea5adb6622f8eb742e0c 302 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 91 107 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site ALFP_1097 e931ce51a193ea5adb6622f8eb742e0c 302 Pfam PF00348 Polyprenyl synthetase 34 267 9.9E-52 T 12-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 ALFP_1097 e931ce51a193ea5adb6622f8eb742e0c 302 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 221 233 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site ALFP_0067 50aeb4bf93280863423805714542f69d 501 SUPERFAMILY SSF53323 6 212 1.05E-5 T 12-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 ALFP_0067 50aeb4bf93280863423805714542f69d 501 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 14 203 9.4E-11 T 12-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 ALFP_0067 50aeb4bf93280863423805714542f69d 501 Gene3D G3DSA:3.40.920.10 3 208 3.9E-6 T 12-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 ALFP_2560 ad7cbda44d15b997cb15397b04dc57cb 188 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 2 179 18.229 T 12-10-2018 IPR006008 Intracellular septation protein A GO:0016021 ALFP_2560 ad7cbda44d15b997cb15397b04dc57cb 188 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 3 178 4.6E-54 T 12-10-2018 IPR006008 Intracellular septation protein A GO:0016021 ALFP_2560 ad7cbda44d15b997cb15397b04dc57cb 188 Pfam PF04279 Intracellular septation protein A 3 178 2.3E-62 T 12-10-2018 IPR006008 Intracellular septation protein A GO:0016021 ALFP_0640 9ed630e1aff2ab1090ca0e4c852ee889 61 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 11 54 2.2E-12 T 12-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 ALFP_0640 9ed630e1aff2ab1090ca0e4c852ee889 61 Pfam PF04995 Heme exporter protein D (CcmD) 14 55 1.6E-10 T 12-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 ALFP_1269 55045faaebc387e8936591cbf02cefe5 463 SUPERFAMILY SSF56954 36 449 6.67E-90 T 12-10-2018 ALFP_1269 55045faaebc387e8936591cbf02cefe5 463 Gene3D G3DSA:2.20.200.10 82 336 2.6E-120 T 12-10-2018 ALFP_1269 55045faaebc387e8936591cbf02cefe5 463 Pfam PF02321 Outer membrane efflux protein 47 236 1.2E-19 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_1269 55045faaebc387e8936591cbf02cefe5 463 Pfam PF02321 Outer membrane efflux protein 267 444 7.3E-22 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_1269 55045faaebc387e8936591cbf02cefe5 463 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 1 447 4.6E-89 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 ALFP_1269 55045faaebc387e8936591cbf02cefe5 463 Gene3D G3DSA:1.20.1600.10 38 448 2.6E-120 T 12-10-2018 ALFP_0625 ca817d1f45f9d6ff26f70333f79d6f2e 75 PIRSF PIRSF018634 2 75 3.5E-30 T 12-10-2018 IPR009387 Toxin HigB-2 ALFP_0625 ca817d1f45f9d6ff26f70333f79d6f2e 75 Pfam PF06296 RelE toxin of RelE / RelB toxin-antitoxin system 2 74 2.4E-30 T 12-10-2018 IPR009387 Toxin HigB-2 ALFP_2134 9d54f9c67d89ba627d921aff30cf5b89 143 SUPERFAMILY SSF51182 32 137 1.18E-27 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_2134 9d54f9c67d89ba627d921aff30cf5b89 143 Pfam PF12973 ChrR Cupin-like domain 40 125 3.1E-22 T 12-10-2018 IPR025979 ChrR-like cupin domain ALFP_2134 9d54f9c67d89ba627d921aff30cf5b89 143 Gene3D G3DSA:2.60.120.10 29 134 8.5E-32 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_0916 9095d37e347db160fb79297b73b80d92 523 SUPERFAMILY SSF54373 349 459 1.64E-30 T 12-10-2018 ALFP_0916 9095d37e347db160fb79297b73b80d92 523 SUPERFAMILY SSF51905 36 512 1.65E-51 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0916 9095d37e347db160fb79297b73b80d92 523 Gene3D G3DSA:1.20.1440.240 155 260 1.7E-168 T 12-10-2018 ALFP_0916 9095d37e347db160fb79297b73b80d92 523 Gene3D G3DSA:3.50.50.60 41 506 1.7E-168 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_0916 9095d37e347db160fb79297b73b80d92 523 Gene3D G3DSA:3.90.660.10 79 454 1.7E-168 T 12-10-2018 ALFP_0916 9095d37e347db160fb79297b73b80d92 523 Pfam PF01593 Flavin containing amine oxidoreductase 49 504 1.3E-60 T 12-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 ALFP_0916 9095d37e347db160fb79297b73b80d92 523 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 63 6.0E-5 T 12-10-2018 ALFP_0916 9095d37e347db160fb79297b73b80d92 523 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 400 415 6.0E-5 T 12-10-2018 ALFP_1545 be07a23e4c2532b4ae8fdf67c3ffc6b4 506 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 441 9.8E-142 T 12-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane ALFP_1493 4d7938756052ed185714fc458173f270 90 Gene3D G3DSA:2.40.50.140 1 71 3.3E-31 T 12-10-2018 ALFP_1493 4d7938756052ed185714fc458173f270 90 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 1.8E-31 T 12-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 ALFP_1493 4d7938756052ed185714fc458173f270 90 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 74 26.1 T 12-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 ALFP_1493 4d7938756052ed185714fc458173f270 90 SUPERFAMILY SSF50249 1 71 3.14E-25 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold ALFP_1493 4d7938756052ed185714fc458173f270 90 Pfam PF01176 Translation initiation factor 1A / IF-1 8 70 7.1E-23 T 12-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 ALFP_0228 d895bd206f6b5d51129a46cc8f36fd00 277 SUPERFAMILY SSF52540 14 254 7.5E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0228 d895bd206f6b5d51129a46cc8f36fd00 277 Pfam PF00005 ABC transporter 31 182 5.4E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0228 d895bd206f6b5d51129a46cc8f36fd00 277 SMART SM00382 40 216 1.4E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0228 d895bd206f6b5d51129a46cc8f36fd00 277 Gene3D G3DSA:3.40.50.300 11 256 1.8E-51 T 12-10-2018 ALFP_3067 be52cceaf57268fe7e8b9d3d05e1c789 211 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 33 201 1.7E-29 T 12-10-2018 IPR005247 YbhB/YbcL ALFP_3067 be52cceaf57268fe7e8b9d3d05e1c789 211 SUPERFAMILY SSF49777 1 201 8.11E-41 T 12-10-2018 IPR036610 PEBP-like superfamily ALFP_3067 be52cceaf57268fe7e8b9d3d05e1c789 211 Gene3D G3DSA:3.90.280.10 1 205 5.4E-49 T 12-10-2018 IPR036610 PEBP-like superfamily ALFP_3067 be52cceaf57268fe7e8b9d3d05e1c789 211 Pfam PF01161 Phosphatidylethanolamine-binding protein 32 201 2.6E-39 T 12-10-2018 IPR008914 Phosphatidylethanolamine-binding protein ALFP_2480 0c50000ec00dcd1d7adf73a06deb2431 138 Pfam PF03653 Uncharacterised protein family (UPF0093) 2 138 5.4E-48 T 12-10-2018 IPR005265 Uncharacterised protein family UPF0093 ALFP_2480 0c50000ec00dcd1d7adf73a06deb2431 138 PIRSF PIRSF004638 1 138 2.3E-50 T 12-10-2018 IPR005265 Uncharacterised protein family UPF0093 ALFP_3278 7f9cb2f463dd2a8d8f8e2da855ab051c 337 Pfam PF13379 NMT1-like family 20 263 6.6E-27 T 12-10-2018 ALFP_3278 7f9cb2f463dd2a8d8f8e2da855ab051c 337 Gene3D G3DSA:3.40.190.10 23 139 1.4E-12 T 12-10-2018 ALFP_3278 7f9cb2f463dd2a8d8f8e2da855ab051c 337 SUPERFAMILY SSF53850 26 296 2.27E-26 T 12-10-2018 ALFP_3278 7f9cb2f463dd2a8d8f8e2da855ab051c 337 Gene3D G3DSA:3.40.190.10 140 337 9.8E-30 T 12-10-2018 ALFP_0340 0f4212cf401ea15a74f252f991b1acbd 243 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_0340 0f4212cf401ea15a74f252f991b1acbd 243 Gene3D G3DSA:3.40.50.300 1 243 2.3E-74 T 12-10-2018 ALFP_0340 0f4212cf401ea15a74f252f991b1acbd 243 Pfam PF00005 ABC transporter 20 168 2.9E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0340 0f4212cf401ea15a74f252f991b1acbd 243 SUPERFAMILY SSF52540 4 238 7.99E-78 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0340 0f4212cf401ea15a74f252f991b1acbd 243 SMART SM00382 29 216 5.2E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0340 0f4212cf401ea15a74f252f991b1acbd 243 PIRSF PIRSF039085 1 243 2.9E-106 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 ALFP_3221 f55a947b390a889dc2db3cda03bcfdfb 164 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 12 76 1.3E-7 T 12-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 ALFP_3221 f55a947b390a889dc2db3cda03bcfdfb 164 Gene3D G3DSA:2.30.110.10 6 164 1.7E-43 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 ALFP_3221 f55a947b390a889dc2db3cda03bcfdfb 164 PIRSF PIRSF004633 5 160 2.5E-22 T 12-10-2018 IPR014419 Heme utilization protein with pyridoxamine 5'-phosphate domain ALFP_3221 f55a947b390a889dc2db3cda03bcfdfb 164 SUPERFAMILY SSF50475 2 152 8.64E-30 T 12-10-2018 ALFP_2522 b55971c8ac0eaa45f597bb60c3f87122 336 Pfam PF03888 MucB/RseB N-terminal domain 41 212 1.8E-54 T 12-10-2018 IPR033434 MucB/RseB, N-terminal ALFP_2522 b55971c8ac0eaa45f597bb60c3f87122 336 Gene3D G3DSA:2.50.20.10 39 217 4.6E-52 T 12-10-2018 ALFP_2522 b55971c8ac0eaa45f597bb60c3f87122 336 PIRSF PIRSF005427 4 333 1.5E-83 T 12-10-2018 IPR005588 MucB/RseB ALFP_2522 b55971c8ac0eaa45f597bb60c3f87122 336 Gene3D G3DSA:3.30.200.100 232 331 3.6E-13 T 12-10-2018 IPR038484 MucB/RseB, C-terminal domain superfamily ALFP_2522 b55971c8ac0eaa45f597bb60c3f87122 336 Pfam PF17188 MucB/RseB C-terminal domain 232 326 2.6E-18 T 12-10-2018 IPR033436 MucB/RseB, C-terminal ALFP_0269 a9ff8b55dffadd7f85f275088cfa0dee 152 Gene3D G3DSA:3.30.428.10 12 150 1.4E-33 T 12-10-2018 IPR036265 HIT-like superfamily ALFP_0269 a9ff8b55dffadd7f85f275088cfa0dee 152 PIRSF PIRSF000714 3 142 9.9E-35 T 12-10-2018 IPR026026 Histidine triad hydrolase, Hint-type ALFP_0269 a9ff8b55dffadd7f85f275088cfa0dee 152 SUPERFAMILY SSF54197 2 114 1.24E-33 T 12-10-2018 IPR036265 HIT-like superfamily ALFP_0269 a9ff8b55dffadd7f85f275088cfa0dee 152 Pfam PF01230 HIT domain 31 98 2.6E-13 T 12-10-2018 IPR001310 Histidine triad (HIT) protein ALFP_2651 a76618945d720cbb5789786f2aab336c 150 Gene3D G3DSA:1.10.10.10 1 134 8.5E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_2651 a76618945d720cbb5789786f2aab336c 150 SUPERFAMILY SSF46785 6 139 7.34E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2651 a76618945d720cbb5789786f2aab336c 150 SMART SM00347 23 123 8.0E-4 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_2651 a76618945d720cbb5789786f2aab336c 150 Pfam PF12802 MarR family 29 86 1.1E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ALFP_3123 35471c0c428e3202fc8b469407e41d8d 30 Gene3D G3DSA:3.40.640.10 1 27 1.9E-6 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_3123 35471c0c428e3202fc8b469407e41d8d 30 SUPERFAMILY SSF53383 2 27 4.26E-5 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_1573 f42676460da8f7bea1c871fc8fd9df77 540 Pfam PF05425 Copper resistance protein D 317 416 3.3E-20 T 12-10-2018 IPR008457 Copper resistance protein D GO:0016021 ALFP_1573 f42676460da8f7bea1c871fc8fd9df77 540 Pfam PF04234 CopC domain 34 125 2.3E-19 T 12-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 ALFP_1573 f42676460da8f7bea1c871fc8fd9df77 540 Gene3D G3DSA:2.60.40.1220 34 131 2.3E-17 T 12-10-2018 ALFP_1573 f42676460da8f7bea1c871fc8fd9df77 540 SUPERFAMILY SSF81296 33 125 1.05E-18 T 12-10-2018 IPR014756 Immunoglobulin E-set ALFP_0512 d9cb3552651bf5f7a963ed86f58f50ff 280 Gene3D G3DSA:1.10.3720.10 20 272 1.4E-54 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0512 d9cb3552651bf5f7a963ed86f58f50ff 280 SUPERFAMILY SSF161098 21 276 3.05E-55 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0512 d9cb3552651bf5f7a963ed86f58f50ff 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 264 4.0E-11 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_3160 6731bea6dd2b16ef57fe27116b23871f 133 Pfam PF07681 DoxX 13 89 4.0E-8 T 12-10-2018 IPR032808 DoxX family ALFP_1851 5a866c67607461c3fdf0538205297c1a 745 Gene3D G3DSA:2.170.130.10 17 161 1.0E-42 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily ALFP_1851 5a866c67607461c3fdf0538205297c1a 745 Pfam PF07715 TonB-dependent Receptor Plug Domain 43 156 2.8E-28 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain ALFP_1851 5a866c67607461c3fdf0538205297c1a 745 Gene3D G3DSA:2.40.170.20 167 745 6.4E-204 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily ALFP_1851 5a866c67607461c3fdf0538205297c1a 745 SUPERFAMILY SSF56935 25 745 1.01E-136 T 12-10-2018 ALFP_1851 5a866c67607461c3fdf0538205297c1a 745 Pfam PF00593 TonB dependent receptor 253 742 3.8E-60 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel ALFP_1851 5a866c67607461c3fdf0538205297c1a 745 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 44 745 3.9E-92 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 ALFP_3171 7b6728a4f763ebf7a881037e8028d651 288 SUPERFAMILY SSF52540 46 194 6.61E-24 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3171 7b6728a4f763ebf7a881037e8028d651 288 Gene3D G3DSA:3.40.50.300 56 196 2.5E-10 T 12-10-2018 ALFP_3171 7b6728a4f763ebf7a881037e8028d651 288 Pfam PF05673 Protein of unknown function (DUF815) 35 286 4.1E-103 T 12-10-2018 IPR008533 Domain of unknown function DUF815 ALFP_3327 9e525f3206143d781e209217ecea7ba5 156 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 18 148 6.1E-20 T 12-10-2018 IPR009936 Protein of unknown function DUF1468 ALFP_2745 dc70c282abc85155f4274d27d411cb24 367 SUPERFAMILY SSF53822 3 358 1.14E-83 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_2745 dc70c282abc85155f4274d27d411cb24 367 Gene3D G3DSA:3.40.50.2300 105 340 1.0E-125 T 12-10-2018 ALFP_2745 dc70c282abc85155f4274d27d411cb24 367 Pfam PF13433 Periplasmic binding protein domain 3 353 1.5E-135 T 12-10-2018 ALFP_2745 dc70c282abc85155f4274d27d411cb24 367 Gene3D G3DSA:3.40.50.2300 3 321 1.0E-125 T 12-10-2018 ALFP_1183 b6bbe810450adb22f1a8f68a10123d42 273 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 4 264 3.5E-107 T 12-10-2018 IPR022522 Flagellar motor stator, MotA ALFP_1183 b6bbe810450adb22f1a8f68a10123d42 273 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 187 204 - T 12-10-2018 IPR000540 Flagellar motor protein MotA, conserved site ALFP_1183 b6bbe810450adb22f1a8f68a10123d42 273 Pfam PF01618 MotA/TolQ/ExbB proton channel family 120 219 9.7E-11 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel ALFP_1165 86bb6bc3dffab7ea0eed16c317333b6e 351 Pfam PF03601 Conserved hypothetical protein 698 31 329 4.6E-83 T 12-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 ALFP_1908 700e0c997b6acdba3a4ef8dd27afe70a 133 SUPERFAMILY SSF55298 3 133 7.38E-25 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_1908 700e0c997b6acdba3a4ef8dd27afe70a 133 Pfam PF01042 Endoribonuclease L-PSP 27 132 1.5E-18 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 ALFP_1908 700e0c997b6acdba3a4ef8dd27afe70a 133 Gene3D G3DSA:3.30.1330.40 1 133 2.0E-24 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_2528 c92098eb619d291ef5031dff6525e52b 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 5.9E-46 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2528 c92098eb619d291ef5031dff6525e52b 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 5.9E-46 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2528 c92098eb619d291ef5031dff6525e52b 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 5.9E-46 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2528 c92098eb619d291ef5031dff6525e52b 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 5.9E-46 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2528 c92098eb619d291ef5031dff6525e52b 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 5.9E-46 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2528 c92098eb619d291ef5031dff6525e52b 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 5.9E-46 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2528 c92098eb619d291ef5031dff6525e52b 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.2E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2528 c92098eb619d291ef5031dff6525e52b 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.2E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2528 c92098eb619d291ef5031dff6525e52b 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.2E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_2528 c92098eb619d291ef5031dff6525e52b 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 246 5.5E-67 T 12-10-2018 ALFP_2528 c92098eb619d291ef5031dff6525e52b 247 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 11 245 2.7E-98 T 12-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 ALFP_2528 c92098eb619d291ef5031dff6525e52b 247 SUPERFAMILY SSF51735 8 247 1.89E-83 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_2528 c92098eb619d291ef5031dff6525e52b 247 Gene3D G3DSA:3.40.50.720 1 247 6.1E-84 T 12-10-2018 ALFP_2528 c92098eb619d291ef5031dff6525e52b 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ALFP_2528 c92098eb619d291ef5031dff6525e52b 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 190 1.1E-4 T 12-10-2018 ALFP_2799 196c14bc083f3a24b006d2b8dd4d2cff 238 Pfam PF03591 AzlC protein 20 163 1.6E-33 T 12-10-2018 IPR011606 Branched-chain amino acid transport, permease ALFP_0454 43c7156d64c79a801f645b89e13413f0 718 SUPERFAMILY SSF52540 147 649 3.99E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0454 43c7156d64c79a801f645b89e13413f0 718 Pfam PF01935 Domain of unknown function DUF87 161 504 2.6E-24 T 12-10-2018 IPR002789 Helicase HerA, central domain ALFP_0454 43c7156d64c79a801f645b89e13413f0 718 Gene3D G3DSA:3.40.50.300 139 250 4.5E-18 T 12-10-2018 ALFP_0454 43c7156d64c79a801f645b89e13413f0 718 Gene3D G3DSA:3.40.50.300 455 657 3.6E-51 T 12-10-2018 ALFP_2019 7cbab283e99de55c8fa7c73759971bf2 227 Pfam PF03591 AzlC protein 17 155 1.0E-37 T 12-10-2018 IPR011606 Branched-chain amino acid transport, permease ALFP_2258 cd588c6fb85789d78e38a1d667e87251 294 SUPERFAMILY SSF161098 83 276 3.79E-23 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2258 cd588c6fb85789d78e38a1d667e87251 294 Gene3D G3DSA:1.10.3720.10 79 285 1.5E-20 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2258 cd588c6fb85789d78e38a1d667e87251 294 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 7 59 5.6E-7 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain ALFP_2258 cd588c6fb85789d78e38a1d667e87251 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 289 1.8E-27 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_3494 dca8de4dee2e52677cbe87107ba607a5 313 PIRSF PIRSF006232 19 301 1.4E-72 T 12-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 ALFP_3494 dca8de4dee2e52677cbe87107ba607a5 313 Gene3D G3DSA:2.60.120.10 21 264 1.4E-60 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_3494 dca8de4dee2e52677cbe87107ba607a5 313 Pfam PF05726 Pirin C-terminal cupin domain 192 288 1.1E-16 T 12-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 ALFP_3494 dca8de4dee2e52677cbe87107ba607a5 313 SUPERFAMILY SSF51182 28 301 3.9E-68 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_3494 dca8de4dee2e52677cbe87107ba607a5 313 Pfam PF02678 Pirin 42 139 9.9E-30 T 12-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 ALFP_1802 aa5812e6cf78d5017f616a2991c0f221 357 Gene3D G3DSA:1.25.40.10 249 340 1.6E-7 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_1802 aa5812e6cf78d5017f616a2991c0f221 357 SUPERFAMILY SSF53474 34 137 6.31E-6 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1802 aa5812e6cf78d5017f616a2991c0f221 357 SUPERFAMILY SSF48452 263 326 1.0E-7 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 ALFP_1198 e44ce3f669480f640696041a1ae3f806 149 Pfam PF05130 FlgN protein 2 139 9.4E-17 T 12-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 ALFP_1198 e44ce3f669480f640696041a1ae3f806 149 SUPERFAMILY SSF140566 3 122 1.57E-11 T 12-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 ALFP_1198 e44ce3f669480f640696041a1ae3f806 149 Gene3D G3DSA:1.20.58.300 1 123 6.4E-15 T 12-10-2018 ALFP_1951 d5ed703ce24fc0ddea3574bec7d49020 128 SUPERFAMILY SSF55961 1 127 4.23E-32 T 12-10-2018 ALFP_1951 d5ed703ce24fc0ddea3574bec7d49020 128 Gene3D G3DSA:3.30.530.20 1 128 4.0E-35 T 12-10-2018 IPR023393 START-like domain superfamily ALFP_1951 d5ed703ce24fc0ddea3574bec7d49020 128 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 1 118 1.1E-29 T 12-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 ALFP_2574 3bf0da3f6b74aa5d7553ae58ac3684f4 287 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 68 280 3.6E-68 T 12-10-2018 ALFP_2574 3bf0da3f6b74aa5d7553ae58ac3684f4 287 Pfam PF12710 haloacid dehalogenase-like hydrolase 81 248 1.2E-20 T 12-10-2018 ALFP_2574 3bf0da3f6b74aa5d7553ae58ac3684f4 287 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 79 251 9.1E-28 T 12-10-2018 ALFP_2574 3bf0da3f6b74aa5d7553ae58ac3684f4 287 Pfam PF13284 Domain of unknown function (DUF4072) 8 53 1.2E-11 T 12-10-2018 IPR025138 Domain of unknown function DUF4072 ALFP_2574 3bf0da3f6b74aa5d7553ae58ac3684f4 287 Gene3D G3DSA:3.40.50.1000 17 284 2.8E-71 T 12-10-2018 IPR023214 HAD superfamily ALFP_2574 3bf0da3f6b74aa5d7553ae58ac3684f4 287 SUPERFAMILY SSF56784 74 283 9.49E-46 T 12-10-2018 IPR036412 HAD-like superfamily ALFP_2370 e70f7d89bfca70597b38f877734cf5e4 228 Pfam PF01810 LysE type translocator 33 221 1.3E-33 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 ALFP_2370 e70f7d89bfca70597b38f877734cf5e4 228 PIRSF PIRSF006324 18 224 4.0E-48 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 ALFP_3153 08ec8a5b7da551c6165993fafb9aceb3 274 PIRSF PIRSF038471 1 270 1.7E-59 T 12-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 ALFP_3153 08ec8a5b7da551c6165993fafb9aceb3 274 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 4 256 7.9E-43 T 12-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 ALFP_3153 08ec8a5b7da551c6165993fafb9aceb3 274 Pfam PF04085 rod shape-determining protein MreC 109 255 1.4E-33 T 12-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 ALFP_3153 08ec8a5b7da551c6165993fafb9aceb3 274 Gene3D G3DSA:2.40.10.340 108 249 1.0E-30 T 12-10-2018 ALFP_3153 08ec8a5b7da551c6165993fafb9aceb3 274 Gene3D G3DSA:2.40.10.350 166 243 1.0E-30 T 12-10-2018 ALFP_1319 7c378893e01b5c4862d5048eeaf5d80a 230 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 15 215 7.2E-30 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 ALFP_1319 7c378893e01b5c4862d5048eeaf5d80a 230 Pfam PF01914 MarC family integral membrane protein 12 215 1.5E-44 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 ALFP_2566 2e24f26d48085afe5232db395082e0d7 428 SUPERFAMILY SSF103473 3 408 1.96E-24 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2566 2e24f26d48085afe5232db395082e0d7 428 Gene3D G3DSA:1.20.1250.20 1 403 1.2E-22 T 12-10-2018 ALFP_2566 2e24f26d48085afe5232db395082e0d7 428 Pfam PF07690 Major Facilitator Superfamily 4 341 5.1E-18 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_0561 7889dcbb2865c387083ad1f05b527fc6 442 Gene3D G3DSA:1.20.1250.20 16 441 1.1E-56 T 12-10-2018 ALFP_0561 7889dcbb2865c387083ad1f05b527fc6 442 Pfam PF00083 Sugar (and other) transporter 21 225 2.5E-22 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ALFP_0561 7889dcbb2865c387083ad1f05b527fc6 442 SUPERFAMILY SSF103473 20 427 6.93E-59 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2041 4c72b660764a560dbd7b9c0020bfb023 430 Pfam PF00860 Permease family 18 388 7.6E-54 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 ALFP_2041 4c72b660764a560dbd7b9c0020bfb023 430 PIRSF PIRSF005353 1 430 1.2E-177 T 12-10-2018 IPR026033 Purine permease PbuG-like ALFP_1829 268c264ab1eb630748f27a32ae69b26f 1065 Pfam PF02811 PHP domain 15 146 4.8E-14 T 12-10-2018 IPR004013 PHP domain GO:0003824 ALFP_1829 268c264ab1eb630748f27a32ae69b26f 1065 Pfam PF14579 Helix-hairpin-helix motif 805 896 1.1E-13 T 12-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_1829 268c264ab1eb630748f27a32ae69b26f 1065 SUPERFAMILY SSF89550 16 71 8.44E-7 T 12-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 ALFP_1829 268c264ab1eb630748f27a32ae69b26f 1065 Gene3D G3DSA:3.20.20.140 6 287 1.5E-48 T 12-10-2018 ALFP_1829 268c264ab1eb630748f27a32ae69b26f 1065 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 9 1065 12.899 T 12-10-2018 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_1829 268c264ab1eb630748f27a32ae69b26f 1065 SMART SM00481 10 78 6.2E-8 T 12-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal ALFP_1829 268c264ab1eb630748f27a32ae69b26f 1065 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 11 862 2.3E-160 T 12-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_1829 268c264ab1eb630748f27a32ae69b26f 1065 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 308 731 1.3E-143 T 12-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_3480 608be50962e80bb22c1bdd79a3acffaa 284 Gene3D G3DSA:3.20.20.100 1 277 3.9E-107 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily ALFP_3480 608be50962e80bb22c1bdd79a3acffaa 284 PIRSF PIRSF000097 1 271 3.5E-85 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_3480 608be50962e80bb22c1bdd79a3acffaa 284 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 42 59 - T 12-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 ALFP_3480 608be50962e80bb22c1bdd79a3acffaa 284 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 126 143 - T 12-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 ALFP_3480 608be50962e80bb22c1bdd79a3acffaa 284 PRINTS PR00069 Aldo-keto reductase signature 197 221 1.1E-44 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_3480 608be50962e80bb22c1bdd79a3acffaa 284 PRINTS PR00069 Aldo-keto reductase signature 126 143 1.1E-44 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_3480 608be50962e80bb22c1bdd79a3acffaa 284 PRINTS PR00069 Aldo-keto reductase signature 94 112 1.1E-44 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_3480 608be50962e80bb22c1bdd79a3acffaa 284 PRINTS PR00069 Aldo-keto reductase signature 38 62 1.1E-44 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_3480 608be50962e80bb22c1bdd79a3acffaa 284 PRINTS PR00069 Aldo-keto reductase signature 160 189 1.1E-44 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ALFP_3480 608be50962e80bb22c1bdd79a3acffaa 284 Pfam PF00248 Aldo/keto reductase family 19 261 4.4E-45 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain ALFP_3480 608be50962e80bb22c1bdd79a3acffaa 284 SUPERFAMILY SSF51430 3 271 4.71E-88 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily ALFP_2775 586e97e94aab1e4d344d376f5f69b9ab 199 SUPERFAMILY SSF54523 40 194 4.87E-7 T 12-10-2018 ALFP_2775 586e97e94aab1e4d344d376f5f69b9ab 199 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 27 8.3E-7 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site ALFP_2775 586e97e94aab1e4d344d376f5f69b9ab 199 Pfam PF07963 Prokaryotic N-terminal methylation motif 5 28 2.6E-8 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site ALFP_2775 586e97e94aab1e4d344d376f5f69b9ab 199 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site ALFP_1480 b79ef2e7558b60405231f2f145becb14 162 SUPERFAMILY SSF52788 1 151 3.79E-51 T 12-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily ALFP_1480 b79ef2e7558b60405231f2f145becb14 162 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 4 147 5.1E-41 T 12-10-2018 IPR023485 Phosphotyrosine protein phosphatase I ALFP_1480 b79ef2e7558b60405231f2f145becb14 162 SMART SM00226 2 151 1.4E-50 T 12-10-2018 IPR023485 Phosphotyrosine protein phosphatase I ALFP_1480 b79ef2e7558b60405231f2f145becb14 162 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 123 138 1.1E-21 T 12-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 ALFP_1480 b79ef2e7558b60405231f2f145becb14 162 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 4 21 1.1E-21 T 12-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 ALFP_1480 b79ef2e7558b60405231f2f145becb14 162 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 47 63 1.1E-21 T 12-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 ALFP_1480 b79ef2e7558b60405231f2f145becb14 162 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 81 96 1.1E-21 T 12-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 ALFP_1480 b79ef2e7558b60405231f2f145becb14 162 Gene3D G3DSA:3.40.50.2300 1 156 4.1E-55 T 12-10-2018 ALFP_0209 00d971fc12ae52fe16730663fb99bab9 78 SUPERFAMILY SSF54975 1 78 8.94E-22 T 12-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 ALFP_0209 00d971fc12ae52fe16730663fb99bab9 78 Pfam PF00708 Acylphosphatase 1 77 6.2E-20 T 12-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 ALFP_0209 00d971fc12ae52fe16730663fb99bab9 78 Gene3D G3DSA:3.30.70.100 1 78 1.6E-22 T 12-10-2018 ALFP_0487 d112fd22f1599ebce4dc2781326a0e02 313 Gene3D G3DSA:1.10.3470.10 3 312 4.7E-43 T 12-10-2018 IPR037294 ABC transporter, BtuC-like ALFP_0487 d112fd22f1599ebce4dc2781326a0e02 313 SUPERFAMILY SSF81345 8 308 8.63E-45 T 12-10-2018 IPR037294 ABC transporter, BtuC-like ALFP_0487 d112fd22f1599ebce4dc2781326a0e02 313 Pfam PF01032 FecCD transport family 27 308 1.9E-38 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 ALFP_0377 512b2674171a4cee295a9c7970418913 209 Pfam PF07021 Methionine biosynthesis protein MetW 14 200 3.9E-73 T 12-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 ALFP_0377 512b2674171a4cee295a9c7970418913 209 SUPERFAMILY SSF53335 16 200 1.24E-28 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_0377 512b2674171a4cee295a9c7970418913 209 Gene3D G3DSA:3.40.50.150 5 183 3.5E-23 T 12-10-2018 ALFP_0377 512b2674171a4cee295a9c7970418913 209 TIGRFAM TIGR02081 metW: methionine biosynthesis protein MetW 14 201 4.8E-83 T 12-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 ALFP_2240 f4b86e6106538ae27fc4b3872e2cbe16 410 Pfam PF00034 Cytochrome c 331 405 2.5E-4 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2240 f4b86e6106538ae27fc4b3872e2cbe16 410 Pfam PF06181 Urate oxidase N-terminal 3 304 4.7E-126 T 12-10-2018 IPR010389 Urate oxidase N-terminal ALFP_2240 f4b86e6106538ae27fc4b3872e2cbe16 410 Gene3D G3DSA:1.10.760.10 301 408 2.8E-6 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2240 f4b86e6106538ae27fc4b3872e2cbe16 410 SUPERFAMILY SSF46626 331 405 2.95E-7 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_3020 1e413777e85bd19339127ec6ab5bec33 408 SUPERFAMILY SSF51556 100 381 3.11E-8 T 12-10-2018 IPR032466 Metal-dependent hydrolase ALFP_3020 1e413777e85bd19339127ec6ab5bec33 408 Gene3D G3DSA:3.20.20.140 100 389 2.9E-14 T 12-10-2018 ALFP_1318 5ed134ab747622b8121dd241ff41c81c 498 PIRSF PIRSF001892 1 492 2.4E-117 T 12-10-2018 IPR028351 Cyclolysin transport protein CyaE GO:0005215 ALFP_1318 5ed134ab747622b8121dd241ff41c81c 498 SUPERFAMILY SSF56954 7 488 9.94E-72 T 12-10-2018 ALFP_1318 5ed134ab747622b8121dd241ff41c81c 498 Gene3D G3DSA:1.20.1600.10 25 491 1.1E-68 T 12-10-2018 ALFP_1318 5ed134ab747622b8121dd241ff41c81c 498 Pfam PF02321 Outer membrane efflux protein 296 484 3.3E-19 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_1318 5ed134ab747622b8121dd241ff41c81c 498 Pfam PF02321 Outer membrane efflux protein 73 268 2.2E-20 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_2095 749d49d2b50e0b8725ef5eea9bf642d2 453 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 46 390 9.3E-43 T 12-10-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX ALFP_2794 0cb0cd2650186c50dcf2bc9dd09e9b2c 269 Gene3D G3DSA:3.40.980.10 8 179 2.2E-44 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily ALFP_2794 0cb0cd2650186c50dcf2bc9dd09e9b2c 269 Pfam PF00994 Probable molybdopterin binding domain 11 176 1.8E-25 T 12-10-2018 IPR001453 MoaB/Mog domain ALFP_2794 0cb0cd2650186c50dcf2bc9dd09e9b2c 269 SUPERFAMILY SSF53218 8 217 1.24E-37 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily ALFP_2794 0cb0cd2650186c50dcf2bc9dd09e9b2c 269 SMART SM00852 10 183 3.5E-33 T 12-10-2018 IPR001453 MoaB/Mog domain ALFP_1418 ca4f195844d91fb666ad15d58a48cdf8 399 Pfam PF04403 Paraquat-inducible protein A 18 167 7.6E-27 T 12-10-2018 IPR007498 Intermembrane transport protein PqiA-like ALFP_1418 ca4f195844d91fb666ad15d58a48cdf8 399 Pfam PF04403 Paraquat-inducible protein A 223 376 4.4E-49 T 12-10-2018 IPR007498 Intermembrane transport protein PqiA-like ALFP_3581 a3b9e3820e5daec8b9b6f69462858408 246 Pfam PF01925 Sulfite exporter TauE/SafE 17 238 5.0E-11 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 ALFP_1943 17de8ff27340f5a503401aac878ede15 349 Pfam PF13177 DNA polymerase III, delta subunit 22 191 1.1E-37 T 12-10-2018 ALFP_1943 17de8ff27340f5a503401aac878ede15 349 SUPERFAMILY SSF52540 7 223 9.39E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1943 17de8ff27340f5a503401aac878ede15 349 Gene3D G3DSA:3.40.50.300 7 192 6.3E-48 T 12-10-2018 ALFP_1943 17de8ff27340f5a503401aac878ede15 349 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 21 223 5.0E-62 T 12-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ALFP_3202 f3a443cb71f17a055ec59e9c54991926 268 Gene3D G3DSA:3.20.20.70 1 265 3.7E-117 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_3202 f3a443cb71f17a055ec59e9c54991926 268 SUPERFAMILY SSF110399 8 249 6.15E-87 T 12-10-2018 ALFP_3202 f3a443cb71f17a055ec59e9c54991926 268 Hamap MF_00443 Thiazole synthase [thiG]. 9 265 41.711 T 12-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 ALFP_3202 f3a443cb71f17a055ec59e9c54991926 268 Pfam PF05690 Thiazole biosynthesis protein ThiG 12 259 2.2E-105 T 12-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 ALFP_1773 deebca5f54a243f4dc5bcfcb2e1d649a 191 SUPERFAMILY SSF109604 9 170 1.53E-22 T 12-10-2018 ALFP_1773 deebca5f54a243f4dc5bcfcb2e1d649a 191 Gene3D G3DSA:1.10.3210.10 11 186 1.6E-28 T 12-10-2018 ALFP_1773 deebca5f54a243f4dc5bcfcb2e1d649a 191 Pfam PF13328 HD domain 17 150 1.5E-9 T 12-10-2018 IPR003607 HD/PDEase domain ALFP_1362 cc67adf2558762453704051ca8fb07c4 101 SUPERFAMILY SSF54427 2 100 1.72E-32 T 12-10-2018 IPR032710 NTF2-like domain superfamily ALFP_1362 cc67adf2558762453704051ca8fb07c4 101 Gene3D G3DSA:3.10.450.50 1 101 2.6E-28 T 12-10-2018 ALFP_2678 032b1965a658d95eeb2569ae11f5fb09 174 Pfam PF05163 DinB family 8 170 7.5E-29 T 12-10-2018 IPR007837 DNA damage-inducible protein DinB ALFP_2678 032b1965a658d95eeb2569ae11f5fb09 174 Gene3D G3DSA:1.20.120.450 2 173 9.5E-43 T 12-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes ALFP_2678 032b1965a658d95eeb2569ae11f5fb09 174 SUPERFAMILY SSF109854 8 157 2.75E-30 T 12-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes ALFP_3150 b9cf69b4d59ba04f13554c962a581fc4 380 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 10 378 26.94 T 12-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_3150 b9cf69b4d59ba04f13554c962a581fc4 380 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 333 357 - T 12-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_3150 b9cf69b4d59ba04f13554c962a581fc4 380 Pfam PF01098 Cell cycle protein 20 374 1.0E-99 T 12-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_3150 b9cf69b4d59ba04f13554c962a581fc4 380 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 16 374 1.9E-125 T 12-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 ALFP_0452 4e87d199851c57df503440e92634a24a 228 Pfam PF14335 Domain of unknown function (DUF4391) 13 221 4.2E-54 T 12-10-2018 IPR025503 Protein of unknown function DUF4391 ALFP_2002 3e145006d751e7ca205b84094ec8932e 322 Pfam PF04392 ABC transporter substrate binding protein 30 320 8.8E-105 T 12-10-2018 IPR007487 ABC transporter, substrate-binding protein ALFP_2002 3e145006d751e7ca205b84094ec8932e 322 SUPERFAMILY SSF53822 34 283 8.44E-20 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_2002 3e145006d751e7ca205b84094ec8932e 322 Gene3D G3DSA:3.40.50.2300 143 315 3.2E-85 T 12-10-2018 ALFP_2002 3e145006d751e7ca205b84094ec8932e 322 Gene3D G3DSA:3.40.50.2300 40 292 3.2E-85 T 12-10-2018 ALFP_0823 9eea1d9f2da65b446652208db38bfe80 409 PIRSF PIRSF036542 1 409 3.6E-196 T 12-10-2018 IPR011415 Predicted bifunctional spore maturation protein, fused SpmA/SpmB ALFP_0823 9eea1d9f2da65b446652208db38bfe80 409 Pfam PF07670 Nucleoside recognition 51 155 5.3E-7 T 12-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 ALFP_3406 208c412d12f5b05954de8455c2e0a457 497 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 66 490 3.7E-192 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath ALFP_3406 208c412d12f5b05954de8455c2e0a457 497 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 17 490 4.3E-223 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath ALFP_0721 3cbd63b56034481ee71fd088879e3f89 290 Gene3D G3DSA:3.40.50.720 1 285 4.6E-52 T 12-10-2018 ALFP_0721 3cbd63b56034481ee71fd088879e3f89 290 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 173 1.2E-29 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 ALFP_0721 3cbd63b56034481ee71fd088879e3f89 290 SUPERFAMILY SSF51735 1 283 8.27E-54 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_0700 e9939ba7dc2b48df3b4d10c3b78e5f6c 539 Gene3D G3DSA:3.60.110.10 264 507 8.6E-15 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily ALFP_0700 e9939ba7dc2b48df3b4d10c3b78e5f6c 539 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 70 487 2.2E-91 T 12-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 ALFP_0700 e9939ba7dc2b48df3b4d10c3b78e5f6c 539 SUPERFAMILY SSF56317 240 518 4.58E-37 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily ALFP_0700 e9939ba7dc2b48df3b4d10c3b78e5f6c 539 Pfam PF00795 Carbon-nitrogen hydrolase 244 511 1.4E-29 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 ALFP_0700 e9939ba7dc2b48df3b4d10c3b78e5f6c 539 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 12 524 21.169 T 12-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 ALFP_0853 49842e29e636f3452615fe9d856208a1 325 Gene3D G3DSA:3.40.190.10 179 283 5.3E-28 T 12-10-2018 ALFP_0853 49842e29e636f3452615fe9d856208a1 325 Pfam PF03466 LysR substrate binding domain 102 311 9.3E-22 T 12-10-2018 IPR005119 LysR, substrate-binding ALFP_0853 49842e29e636f3452615fe9d856208a1 325 SUPERFAMILY SSF53850 103 314 9.05E-22 T 12-10-2018 ALFP_0853 49842e29e636f3452615fe9d856208a1 325 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 75 7.4E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ALFP_0853 49842e29e636f3452615fe9d856208a1 325 Gene3D G3DSA:1.10.10.10 13 100 2.3E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0853 49842e29e636f3452615fe9d856208a1 325 SUPERFAMILY SSF46785 13 121 2.99E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0853 49842e29e636f3452615fe9d856208a1 325 Gene3D G3DSA:3.40.190.10 105 296 5.3E-28 T 12-10-2018 ALFP_1860 5ed203848c3a393bac7fa06e93ee87c5 412 Pfam PF07690 Major Facilitator Superfamily 31 336 1.1E-30 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_1860 5ed203848c3a393bac7fa06e93ee87c5 412 Gene3D G3DSA:1.20.1250.20 12 408 4.1E-43 T 12-10-2018 ALFP_1860 5ed203848c3a393bac7fa06e93ee87c5 412 SUPERFAMILY SSF103473 15 407 8.76E-52 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2154 5e87ea39035a3f8b4897f6e69cad45c7 125 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 46 117 1.6E-9 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2154 5e87ea39035a3f8b4897f6e69cad45c7 125 Gene3D G3DSA:1.10.760.10 28 122 1.9E-14 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2154 5e87ea39035a3f8b4897f6e69cad45c7 125 SUPERFAMILY SSF46626 16 121 2.18E-17 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0164 a4b647122c79deb19f6b79256c1e8a64 89 Pfam PF04324 BFD-like [2Fe-2S] binding domain 3 49 6.1E-9 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain ALFP_0164 a4b647122c79deb19f6b79256c1e8a64 89 Gene3D G3DSA:1.10.10.1100 1 51 4.6E-18 T 12-10-2018 ALFP_1109 5e603aaad04ec13c50c85bb50e4dd72e 147 SUPERFAMILY SSF64076 2 143 5.1E-30 T 12-10-2018 IPR036748 MTH938-like superfamily ALFP_1109 5e603aaad04ec13c50c85bb50e4dd72e 147 Gene3D G3DSA:3.40.1230.10 1 146 5.2E-40 T 12-10-2018 IPR036748 MTH938-like superfamily ALFP_1109 5e603aaad04ec13c50c85bb50e4dd72e 147 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 14 142 2.2E-29 T 12-10-2018 IPR007523 NDUFAF3/Mth938 domain-containing protein ALFP_3415 60255269d4b349657efa84f30e6dd3c8 198 Pfam PF12059 Protein of unknown function (DUF3540) 113 198 2.2E-23 T 12-10-2018 IPR021927 Protein of unknown function DUF3540 ALFP_3415 60255269d4b349657efa84f30e6dd3c8 198 Pfam PF12059 Protein of unknown function (DUF3540) 24 116 3.7E-20 T 12-10-2018 IPR021927 Protein of unknown function DUF3540 ALFP_2511 0d57515d9c33f58f6aa10fe6c440436c 140 Gene3D G3DSA:3.40.50.10110 1 138 1.4E-39 T 12-10-2018 IPR036768 DNA polymerase III subunit chi superfamily ALFP_2511 0d57515d9c33f58f6aa10fe6c440436c 140 SUPERFAMILY SSF102400 1 138 2.09E-37 T 12-10-2018 IPR036768 DNA polymerase III subunit chi superfamily ALFP_2511 0d57515d9c33f58f6aa10fe6c440436c 140 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 133 4.8E-38 T 12-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 ALFP_1769 44274b4f4692add1d45d4a45347f8b1d 239 Gene3D G3DSA:1.10.10.10 11 100 9.4E-12 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1769 44274b4f4692add1d45d4a45347f8b1d 239 SUPERFAMILY SSF46785 5 87 7.35E-6 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_1769 44274b4f4692add1d45d4a45347f8b1d 239 Pfam PF13730 Helix-turn-helix domain 14 65 6.8E-13 T 12-10-2018 ALFP_0013 5c1cf6721a69bc177cf01af1e96816ec 307 PRINTS PR00146 Dihydrodipicolinate synthase signature 42 63 6.5E-14 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0013 5c1cf6721a69bc177cf01af1e96816ec 307 PRINTS PR00146 Dihydrodipicolinate synthase signature 110 126 6.5E-14 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0013 5c1cf6721a69bc177cf01af1e96816ec 307 PRINTS PR00146 Dihydrodipicolinate synthase signature 135 152 6.5E-14 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0013 5c1cf6721a69bc177cf01af1e96816ec 307 PRINTS PR00146 Dihydrodipicolinate synthase signature 78 96 6.5E-14 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0013 5c1cf6721a69bc177cf01af1e96816ec 307 PIRSF PIRSF001365 5 307 1.5E-51 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0013 5c1cf6721a69bc177cf01af1e96816ec 307 SMART SM01130 8 305 4.2E-64 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0013 5c1cf6721a69bc177cf01af1e96816ec 307 Gene3D G3DSA:3.20.20.70 4 306 8.3E-73 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0013 5c1cf6721a69bc177cf01af1e96816ec 307 Pfam PF00701 Dihydrodipicolinate synthetase family 10 300 2.1E-50 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0013 5c1cf6721a69bc177cf01af1e96816ec 307 SUPERFAMILY SSF51569 6 306 3.77E-64 T 12-10-2018 ALFP_1124 ebb6481636e16996532996d995bf3b82 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 288 8.6E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_1124 ebb6481636e16996532996d995bf3b82 306 Gene3D G3DSA:1.10.3720.10 13 301 4.6E-50 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1124 ebb6481636e16996532996d995bf3b82 306 SUPERFAMILY SSF161098 14 292 4.49E-53 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0730 b0e934eaee484973c16fd4c2160cad46 279 Pfam PF01464 Transglycosylase SLT domain 160 246 7.4E-15 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 ALFP_0730 b0e934eaee484973c16fd4c2160cad46 279 Gene3D G3DSA:1.10.530.10 143 268 2.2E-19 T 12-10-2018 ALFP_0730 b0e934eaee484973c16fd4c2160cad46 279 SUPERFAMILY SSF53955 159 269 5.3E-21 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily ALFP_1129 86938e7c968ff9021c73d80540124a6c 446 Pfam PF00563 EAL domain 179 408 3.9E-44 T 12-10-2018 IPR001633 EAL domain ALFP_1129 86938e7c968ff9021c73d80540124a6c 446 SUPERFAMILY SSF141868 181 414 1.7E-48 T 12-10-2018 IPR035919 EAL domain superfamily ALFP_1129 86938e7c968ff9021c73d80540124a6c 446 SMART SM00052 171 411 1.3E-23 T 12-10-2018 IPR001633 EAL domain ALFP_1129 86938e7c968ff9021c73d80540124a6c 446 Gene3D G3DSA:3.20.20.450 169 409 1.0E-49 T 12-10-2018 IPR035919 EAL domain superfamily ALFP_1760 e9e7c9474f0f789e95ce144b2e1c28b1 159 Pfam PF13274 Protein of unknown function (DUF4065) 26 127 1.3E-12 T 12-10-2018 IPR025272 Domain of unknown function DUF4065 ALFP_2329 a3f8753a15a66aacbab9ab319f97964b 513 Pfam PF07690 Major Facilitator Superfamily 29 418 7.4E-48 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_2329 a3f8753a15a66aacbab9ab319f97964b 513 PRINTS PR01036 Tetracycline resistance protein TetB signature 148 172 9.5E-8 T 12-10-2018 ALFP_2329 a3f8753a15a66aacbab9ab319f97964b 513 PRINTS PR01036 Tetracycline resistance protein TetB signature 409 428 9.5E-8 T 12-10-2018 ALFP_2329 a3f8753a15a66aacbab9ab319f97964b 513 PRINTS PR01036 Tetracycline resistance protein TetB signature 213 231 9.5E-8 T 12-10-2018 ALFP_2329 a3f8753a15a66aacbab9ab319f97964b 513 PRINTS PR01036 Tetracycline resistance protein TetB signature 86 108 9.5E-8 T 12-10-2018 ALFP_2329 a3f8753a15a66aacbab9ab319f97964b 513 Gene3D G3DSA:1.20.1720.10 22 232 1.6E-40 T 12-10-2018 ALFP_2329 a3f8753a15a66aacbab9ab319f97964b 513 SUPERFAMILY SSF103473 10 505 2.49E-65 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_1681 8ec4771e295012e7b179df524c5a5f83 445 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 345 365 - T 12-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 ALFP_1681 8ec4771e295012e7b179df524c5a5f83 445 Pfam PF00860 Permease family 18 397 1.6E-73 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 ALFP_1410 a306ec14e4497471b6e192efdf7941d0 448 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 14 352 3.8E-120 T 12-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 ALFP_1410 a306ec14e4497471b6e192efdf7941d0 448 Pfam PF02601 Exonuclease VII, large subunit 129 439 1.3E-95 T 12-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 ALFP_1410 a306ec14e4497471b6e192efdf7941d0 448 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 10 442 27.347 T 12-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 ALFP_1410 a306ec14e4497471b6e192efdf7941d0 448 Pfam PF13742 OB-fold nucleic acid binding domain 13 105 3.0E-26 T 12-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 ALFP_1863 ab2638ed8e274c84d174f41af570cf89 385 SUPERFAMILY SSF51905 7 358 5.26E-54 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1863 ab2638ed8e274c84d174f41af570cf89 385 Gene3D G3DSA:3.50.50.60 10 335 5.5E-86 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1863 ab2638ed8e274c84d174f41af570cf89 385 Gene3D G3DSA:3.30.9.50 43 261 5.5E-86 T 12-10-2018 ALFP_1863 ab2638ed8e274c84d174f41af570cf89 385 Pfam PF01494 FAD binding domain 7 332 4.4E-30 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 ALFP_1863 ab2638ed8e274c84d174f41af570cf89 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 271 286 7.8E-18 T 12-10-2018 ALFP_1863 ab2638ed8e274c84d174f41af570cf89 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 7.8E-18 T 12-10-2018 ALFP_1863 ab2638ed8e274c84d174f41af570cf89 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 286 302 7.8E-18 T 12-10-2018 ALFP_1863 ab2638ed8e274c84d174f41af570cf89 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 144 159 7.8E-18 T 12-10-2018 ALFP_3430 fba2717e7972b491b7d611ff400d190b 434 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 8 431 41.663 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 ALFP_3430 fba2717e7972b491b7d611ff400d190b 434 PIRSF PIRSF000099 1 434 2.7E-162 T 12-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 ALFP_3430 fba2717e7972b491b7d611ff400d190b 434 Pfam PF00815 Histidinol dehydrogenase 26 431 1.1E-168 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 ALFP_3430 fba2717e7972b491b7d611ff400d190b 434 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 37 430 4.2E-162 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 ALFP_3430 fba2717e7972b491b7d611ff400d190b 434 Gene3D G3DSA:3.40.50.1980 33 235 8.7E-128 T 12-10-2018 ALFP_3430 fba2717e7972b491b7d611ff400d190b 434 SUPERFAMILY SSF53720 32 432 1.12E-88 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 ALFP_3430 fba2717e7972b491b7d611ff400d190b 434 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 233 265 - T 12-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 ALFP_3430 fba2717e7972b491b7d611ff400d190b 434 PRINTS PR00083 Histidinol dehydrogenase signature 140 166 2.2E-82 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 ALFP_3430 fba2717e7972b491b7d611ff400d190b 434 PRINTS PR00083 Histidinol dehydrogenase signature 324 349 2.2E-82 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 ALFP_3430 fba2717e7972b491b7d611ff400d190b 434 PRINTS PR00083 Histidinol dehydrogenase signature 204 229 2.2E-82 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 ALFP_3430 fba2717e7972b491b7d611ff400d190b 434 PRINTS PR00083 Histidinol dehydrogenase signature 36 60 2.2E-82 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 ALFP_3430 fba2717e7972b491b7d611ff400d190b 434 PRINTS PR00083 Histidinol dehydrogenase signature 174 200 2.2E-82 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 ALFP_3430 fba2717e7972b491b7d611ff400d190b 434 PRINTS PR00083 Histidinol dehydrogenase signature 255 274 2.2E-82 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 ALFP_3430 fba2717e7972b491b7d611ff400d190b 434 PRINTS PR00083 Histidinol dehydrogenase signature 365 383 2.2E-82 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 ALFP_3430 fba2717e7972b491b7d611ff400d190b 434 PRINTS PR00083 Histidinol dehydrogenase signature 233 254 2.2E-82 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 ALFP_3430 fba2717e7972b491b7d611ff400d190b 434 Gene3D G3DSA:3.40.50.1980 237 353 8.7E-128 T 12-10-2018 ALFP_0517 98e49482b1baa0c61de99403dbda7acd 253 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 30 209 2.5E-73 T 12-10-2018 IPR022301 Integral membrane protein YjbE ALFP_0517 98e49482b1baa0c61de99403dbda7acd 253 Pfam PF03741 Integral membrane protein TerC family 32 208 9.3E-46 T 12-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 ALFP_1278 095a9bb9034112d6e7940d23859f3339 179 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 38 170 2.2E-25 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_2659 626a05521e13fdcb857e0ba9ffac61bb 549 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 546 3.4E-154 T 12-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 ALFP_2659 626a05521e13fdcb857e0ba9ffac61bb 549 SUPERFAMILY SSF52540 1 215 1.06E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2659 626a05521e13fdcb857e0ba9ffac61bb 549 Gene3D G3DSA:3.40.50.300 268 547 1.2E-56 T 12-10-2018 ALFP_2659 626a05521e13fdcb857e0ba9ffac61bb 549 Gene3D G3DSA:3.40.50.300 1 262 1.9E-46 T 12-10-2018 ALFP_2659 626a05521e13fdcb857e0ba9ffac61bb 549 SUPERFAMILY SSF52540 3 500 1.08E-25 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2659 626a05521e13fdcb857e0ba9ffac61bb 549 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 503 8.3E-19 T 12-10-2018 IPR003395 RecF/RecN/SMC, N-terminal ALFP_2659 626a05521e13fdcb857e0ba9ffac61bb 549 PIRSF PIRSF003128 1 549 5.3E-160 T 12-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 ALFP_3626 1037e40c3f67d81ff66e9bb2bea2e1c5 101 Gene3D G3DSA:4.10.830.10 22 101 2.9E-24 T 12-10-2018 ALFP_3626 1037e40c3f67d81ff66e9bb2bea2e1c5 101 SUPERFAMILY SSF57716 2 101 4.42E-39 T 12-10-2018 ALFP_3626 1037e40c3f67d81ff66e9bb2bea2e1c5 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 1.3E-27 T 12-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3626 1037e40c3f67d81ff66e9bb2bea2e1c5 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 26.999 T 12-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid ALFP_1954 3e9cfc5a6572abe7abed1cd4c23ee853 213 Gene3D G3DSA:1.10.357.10 72 209 1.6E-21 T 12-10-2018 ALFP_1954 3e9cfc5a6572abe7abed1cd4c23ee853 213 SUPERFAMILY SSF48498 89 200 2.0E-6 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily ALFP_1954 3e9cfc5a6572abe7abed1cd4c23ee853 213 Gene3D G3DSA:1.10.10.60 2 69 2.7E-23 T 12-10-2018 ALFP_1954 3e9cfc5a6572abe7abed1cd4c23ee853 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 1.2E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1954 3e9cfc5a6572abe7abed1cd4c23ee853 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 1.2E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1954 3e9cfc5a6572abe7abed1cd4c23ee853 213 SUPERFAMILY SSF46689 11 93 7.98E-23 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1954 3e9cfc5a6572abe7abed1cd4c23ee853 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 69 9.6E-19 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_1954 3e9cfc5a6572abe7abed1cd4c23ee853 213 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 154 207 1.6E-4 T 12-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type ALFP_1440 882abcf72016e2dcdfe2cfcc80303914 408 Pfam PF00487 Fatty acid desaturase 16 219 1.6E-12 T 12-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 ALFP_3427 7f5e4002caa9a7d5d141ea1c098e8e9c 82 PIRSF PIRSF003113 1 82 2.2E-24 T 12-10-2018 IPR002634 BolA protein ALFP_3427 7f5e4002caa9a7d5d141ea1c098e8e9c 82 SUPERFAMILY SSF82657 2 79 7.85E-29 T 12-10-2018 IPR036065 BolA-like superfamily ALFP_3427 7f5e4002caa9a7d5d141ea1c098e8e9c 82 Pfam PF01722 BolA-like protein 23 75 1.2E-20 T 12-10-2018 IPR002634 BolA protein ALFP_3427 7f5e4002caa9a7d5d141ea1c098e8e9c 82 Gene3D G3DSA:3.30.300.90 2 78 5.5E-29 T 12-10-2018 ALFP_0703 374b723de6c165aba6ba7ec5a8106dc6 331 Gene3D G3DSA:3.40.50.300 120 326 1.2E-74 T 12-10-2018 ALFP_0703 374b723de6c165aba6ba7ec5a8106dc6 331 Pfam PF02562 PhoH-like protein 123 326 1.0E-94 T 12-10-2018 IPR003714 PhoH-like protein GO:0005524 ALFP_0703 374b723de6c165aba6ba7ec5a8106dc6 331 SUPERFAMILY SSF52540 82 303 2.55E-40 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1832 b45976d61e5faec40434f5fe7bfa72bf 169 SMART SM01144 1 157 1.9E-33 T 12-10-2018 IPR005636 DTW ALFP_1832 b45976d61e5faec40434f5fe7bfa72bf 169 Pfam PF03942 DTW domain 1 152 3.2E-33 T 12-10-2018 IPR005636 DTW ALFP_2625 b90512f432dd2b9fa9ab24b486343d49 113 Gene3D G3DSA:1.10.760.10 8 105 6.9E-20 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_2625 b90512f432dd2b9fa9ab24b486343d49 113 Pfam PF00034 Cytochrome c 19 103 1.0E-7 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_2625 b90512f432dd2b9fa9ab24b486343d49 113 SUPERFAMILY SSF46626 9 105 2.72E-16 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0964 83f2eafc65c707c2d361f92a7315678e 116 Hamap MF_00710 Malonate decarboxylase acyl carrier protein [mdcC]. 1 109 41.497 T 12-10-2018 IPR009662 Malonate decarboxylase delta subunit ALFP_0964 83f2eafc65c707c2d361f92a7315678e 116 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 26 105 2.0E-24 T 12-10-2018 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein ALFP_0964 83f2eafc65c707c2d361f92a7315678e 116 ProDom PD015450 MALONATE DECARBOXYLASE SUBUNIT DELTA ACYL CARRIER DECARBOXYLASE PLASMID DIRECT SEQUENCING 8 101 4.0E-32 T 12-10-2018 IPR009662 Malonate decarboxylase delta subunit ALFP_0964 83f2eafc65c707c2d361f92a7315678e 116 TIGRFAM TIGR03130 malonate_delta: malonate decarboxylase acyl carrier protein 9 104 7.2E-36 T 12-10-2018 IPR009662 Malonate decarboxylase delta subunit ALFP_3301 6c2bfd359f2562e90f706fa135048a40 258 Gene3D G3DSA:3.90.226.10 2 200 3.1E-75 T 12-10-2018 ALFP_3301 6c2bfd359f2562e90f706fa135048a40 258 SUPERFAMILY SSF52096 2 258 4.23E-92 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily ALFP_3301 6c2bfd359f2562e90f706fa135048a40 258 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 99 119 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 ALFP_3301 6c2bfd359f2562e90f706fa135048a40 258 Gene3D G3DSA:1.10.12.10 202 257 7.7E-27 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal ALFP_3301 6c2bfd359f2562e90f706fa135048a40 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 257 8.1E-80 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 ALFP_1855 ec16ff2317e13df26866c9ca4a72f162 504 Pfam PF00860 Permease family 21 398 6.4E-87 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 ALFP_1855 ec16ff2317e13df26866c9ca4a72f162 504 TIGRFAM TIGR03173 pbuX: xanthine permease 23 431 4.0E-151 T 12-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 ALFP_1855 ec16ff2317e13df26866c9ca4a72f162 504 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 346 366 - T 12-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 ALFP_1855 ec16ff2317e13df26866c9ca4a72f162 504 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 21 429 5.9E-99 T 12-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 ALFP_1359 00e7602b4e4899eb0a82b97fb5ab22a2 114 SUPERFAMILY SSF103481 10 110 2.75E-21 T 12-10-2018 ALFP_1359 00e7602b4e4899eb0a82b97fb5ab22a2 114 Gene3D G3DSA:1.10.3730.20 6 114 5.1E-37 T 12-10-2018 ALFP_1359 00e7602b4e4899eb0a82b97fb5ab22a2 114 Pfam PF00893 Small Multidrug Resistance protein 7 98 2.3E-27 T 12-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 ALFP_0844 2020669e6c294a75975ec22774da1c22 486 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 22 461 1.1E-73 T 12-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 ALFP_0844 2020669e6c294a75975ec22774da1c22 486 Gene3D G3DSA:1.10.4160.10 7 478 1.3E-100 T 12-10-2018 IPR038271 Purine-cytosine permease superfamily ALFP_1702 1ecc231ac35173d29a6bb96114840f33 161 Gene3D G3DSA:1.20.120.20 50 150 9.9E-7 T 12-10-2018 ALFP_1702 1ecc231ac35173d29a6bb96114840f33 161 SUPERFAMILY SSF58113 49 145 1.83E-5 T 12-10-2018 ALFP_2673 8b54bcfb814cc133999980a45c27725a 655 SUPERFAMILY SSF53474 372 639 3.21E-21 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2673 8b54bcfb814cc133999980a45c27725a 655 Gene3D G3DSA:3.40.50.1820 370 638 6.9E-22 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_3683 50cf0de4c5b6384cab7d48412fb95bad 174 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 25 159 5.0E-5 T 12-10-2018 ALFP_3683 50cf0de4c5b6384cab7d48412fb95bad 174 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 160 26.93 T 12-10-2018 IPR022973 Ribosomal protein L10 ALFP_3683 50cf0de4c5b6384cab7d48412fb95bad 174 Pfam PF00466 Ribosomal protein L10 4 100 1.4E-23 T 12-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 ALFP_3683 50cf0de4c5b6384cab7d48412fb95bad 174 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 12-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3683 50cf0de4c5b6384cab7d48412fb95bad 174 Gene3D G3DSA:3.30.70.1730 3 133 2.1E-35 T 12-10-2018 ALFP_3683 50cf0de4c5b6384cab7d48412fb95bad 174 SUPERFAMILY SSF160369 3 171 2.88E-55 T 12-10-2018 ALFP_1503 71e170163a824713b3cadbcb1abfa2a1 298 Gene3D G3DSA:3.40.50.1820 2 297 1.6E-68 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1503 71e170163a824713b3cadbcb1abfa2a1 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 48 63 8.1E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_1503 71e170163a824713b3cadbcb1abfa2a1 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 94 107 8.1E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_1503 71e170163a824713b3cadbcb1abfa2a1 298 SUPERFAMILY SSF53474 7 289 4.32E-39 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1503 71e170163a824713b3cadbcb1abfa2a1 298 Pfam PF12697 Alpha/beta hydrolase family 26 288 5.9E-17 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_2950 12ecd25bfd9e35e36479b2c9a58f3d58 172 Gene3D G3DSA:3.10.450.50 10 172 3.7E-37 T 12-10-2018 ALFP_2950 12ecd25bfd9e35e36479b2c9a58f3d58 172 Pfam PF00866 Ring hydroxylating beta subunit 34 164 3.2E-12 T 12-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 ALFP_2950 12ecd25bfd9e35e36479b2c9a58f3d58 172 SUPERFAMILY SSF54427 18 170 1.58E-37 T 12-10-2018 IPR032710 NTF2-like domain superfamily ALFP_1414 216a068f68c034d14960c092ace2f13f 156 Pfam PF02643 Uncharacterized ACR, COG1430 47 148 1.5E-31 T 12-10-2018 IPR003795 Protein of unknown function DUF192 ALFP_1414 216a068f68c034d14960c092ace2f13f 156 Gene3D G3DSA:2.60.120.1140 29 154 2.8E-39 T 12-10-2018 IPR038695 Saro_0823-like superfamily ALFP_3069 ca7d5d41296ebe633e2cfa63826f7a88 455 SUPERFAMILY SSF51261 168 412 2.25E-71 T 12-10-2018 IPR011055 Duplicated hybrid motif ALFP_3069 ca7d5d41296ebe633e2cfa63826f7a88 455 Gene3D G3DSA:3.10.450.350 189 431 2.1E-92 T 12-10-2018 ALFP_3069 ca7d5d41296ebe633e2cfa63826f7a88 455 Pfam PF01551 Peptidase family M23 314 410 2.6E-34 T 12-10-2018 IPR016047 Peptidase M23 ALFP_3069 ca7d5d41296ebe633e2cfa63826f7a88 455 Gene3D G3DSA:3.10.450.350 70 155 4.9E-19 T 12-10-2018 ALFP_3069 ca7d5d41296ebe633e2cfa63826f7a88 455 Gene3D G3DSA:2.70.70.10 286 416 2.1E-92 T 12-10-2018 IPR011055 Duplicated hybrid motif ALFP_2580 65ae9280739c3343dab0818e3c527d83 104 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 10 99 8.8E-23 T 12-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like ALFP_2580 65ae9280739c3343dab0818e3c527d83 104 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 3 104 20.233 T 12-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 ALFP_2299 533dc43fb0f110ed2c3883a92df3a16c 249 Pfam PF00293 NUDIX domain 73 185 2.3E-14 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 ALFP_2299 533dc43fb0f110ed2c3883a92df3a16c 249 Gene3D G3DSA:3.90.79.10 62 230 1.2E-42 T 12-10-2018 ALFP_2299 533dc43fb0f110ed2c3883a92df3a16c 249 SUPERFAMILY SSF55811 53 228 1.76E-32 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 ALFP_3279 80e056b2d0a7a70375977a1fdf6ee2fb 339 SUPERFAMILY SSF160355 27 285 6.67E-34 T 12-10-2018 ALFP_3279 80e056b2d0a7a70375977a1fdf6ee2fb 339 Gene3D G3DSA:3.30.1890.10 26 267 8.7E-21 T 12-10-2018 ALFP_2831 0055957273797fe210dc2c7c90d890b8 152 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 10 145 4.3E-22 T 12-10-2018 IPR009936 Protein of unknown function DUF1468 ALFP_0847 317a4541c7e66c4f5d1c65214ab60ba7 210 Pfam PF09335 SNARE associated Golgi protein 40 164 3.9E-20 T 12-10-2018 IPR032816 SNARE associated Golgi protein ALFP_0355 fabc42850df06dc08b6297e74614b14a 267 SUPERFAMILY SSF46689 200 250 8.51E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0355 fabc42850df06dc08b6297e74614b14a 267 Gene3D G3DSA:1.10.10.60 191 252 9.3E-10 T 12-10-2018 ALFP_1556 51083a2d8ccf82921755787394b693df 129 Gene3D G3DSA:3.30.429.10 1 129 1.9E-45 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily ALFP_1556 51083a2d8ccf82921755787394b693df 129 SUPERFAMILY SSF55331 2 128 1.54E-37 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily ALFP_1556 51083a2d8ccf82921755787394b693df 129 Pfam PF14552 Tautomerase enzyme 38 118 4.0E-27 T 12-10-2018 IPR037479 Tautomerase, MSAD family ALFP_2279 56074de9942551b080a136ef4dd6c8ed 435 SUPERFAMILY SSF51621 6 430 2.11E-156 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 ALFP_2279 56074de9942551b080a136ef4dd6c8ed 435 Gene3D G3DSA:3.20.20.60 1 413 1.8E-169 T 12-10-2018 ALFP_2279 56074de9942551b080a136ef4dd6c8ed 435 ProSitePatterns PS00161 Isocitrate lyase signature. 191 196 - T 12-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 ALFP_2279 56074de9942551b080a136ef4dd6c8ed 435 Pfam PF00463 Isocitrate lyase family 13 252 9.6E-58 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 ALFP_2279 56074de9942551b080a136ef4dd6c8ed 435 Pfam PF00463 Isocitrate lyase family 255 430 1.3E-44 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 ALFP_2279 56074de9942551b080a136ef4dd6c8ed 435 PIRSF PIRSF001362 1 433 4.4E-236 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 ALFP_2279 56074de9942551b080a136ef4dd6c8ed 435 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 9 252 1.3E-109 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 ALFP_0046 bac3cd2f6f58d5ffb0f504e5362f58d7 258 Gene3D G3DSA:3.40.50.12500 13 254 4.8E-63 T 12-10-2018 ALFP_1261 ea8a630bba5343b4d2c104328601f67a 398 Pfam PF01610 Transposase 153 385 2.4E-57 T 12-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain ALFP_1261 ea8a630bba5343b4d2c104328601f67a 398 Pfam PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 35 80 8.1E-6 T 12-10-2018 IPR029261 Transposase IS204/IS1001/IS1096/IS1165, zinc-finger ALFP_1968 5d4528a45497b1a17526e8d62a18ae7b 284 Pfam PF01148 Cytidylyltransferase family 3 277 1.3E-57 T 12-10-2018 ALFP_1968 5d4528a45497b1a17526e8d62a18ae7b 284 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 240 266 - T 12-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 ALFP_2405 34be6c7636230f36f1a80e9c23795f9e 226 SUPERFAMILY SSF53474 14 194 2.01E-30 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2405 34be6c7636230f36f1a80e9c23795f9e 226 Gene3D G3DSA:3.40.50.1820 3 196 6.1E-45 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2405 34be6c7636230f36f1a80e9c23795f9e 226 ProSitePatterns PS01174 Lipolytic enzymes "G-D-X-G" family, putative serine active site. 40 52 - T 12-10-2018 IPR033140 Lipase, GDXG, putative serine active site ALFP_2405 34be6c7636230f36f1a80e9c23795f9e 226 Pfam PF07859 alpha/beta hydrolase fold 13 172 6.0E-27 T 12-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 ALFP_1960 c3b2bb50c86ac54af1ba4919dc067602 393 Pfam PF02684 Lipid-A-disaccharide synthetase 1 385 1.9E-88 T 12-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 ALFP_1960 c3b2bb50c86ac54af1ba4919dc067602 393 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 1 380 3.9E-89 T 12-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 ALFP_1960 c3b2bb50c86ac54af1ba4919dc067602 393 SUPERFAMILY SSF53756 2 367 5.15E-28 T 12-10-2018 ALFP_1960 c3b2bb50c86ac54af1ba4919dc067602 393 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 1 392 32.682 T 12-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 ALFP_2493 19e4e7995cfdb634c70be1facae4b026 126 SUPERFAMILY SSF54593 1 121 1.93E-24 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_2493 19e4e7995cfdb634c70be1facae4b026 126 Gene3D G3DSA:3.10.180.10 6 124 1.6E-37 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_2493 19e4e7995cfdb634c70be1facae4b026 126 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 121 5.5E-8 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain ALFP_2685 dc33cb2aeaa0deb70fb3bf4d167281b2 234 Pfam PF08808 RES domain 43 200 5.7E-24 T 12-10-2018 IPR014914 RES domain ALFP_2685 dc33cb2aeaa0deb70fb3bf4d167281b2 234 SMART SM00953 56 202 3.3E-18 T 12-10-2018 IPR014914 RES domain ALFP_2706 ed20a4cd9c9147c4cafd21a09694af5d 351 Gene3D G3DSA:1.10.8.60 285 350 1.2E-32 T 12-10-2018 ALFP_2706 ed20a4cd9c9147c4cafd21a09694af5d 351 ProDom PD005364 ALDOLASE 4-HYDROXY-2-OXOVALERATE LYASE PYRUVATE 4.1.3.- PLASMID HMG-COA LYASE-LIKE TRANSFERASE HOA 282 346 2.0E-28 T 12-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 ALFP_2706 ed20a4cd9c9147c4cafd21a09694af5d 351 Pfam PF00682 HMGL-like 17 274 1.0E-76 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 ALFP_2706 ed20a4cd9c9147c4cafd21a09694af5d 351 Hamap MF_01656 4-hydroxy-2-oxovalerate aldolase [mhpE]. 1 351 218.999 T 12-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 ALFP_2706 ed20a4cd9c9147c4cafd21a09694af5d 351 Gene3D G3DSA:3.20.20.70 8 278 1.0E-92 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_2706 ed20a4cd9c9147c4cafd21a09694af5d 351 TIGRFAM TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase 14 346 6.3E-178 T 12-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 ALFP_2706 ed20a4cd9c9147c4cafd21a09694af5d 351 SUPERFAMILY SSF51569 12 286 1.83E-66 T 12-10-2018 ALFP_2706 ed20a4cd9c9147c4cafd21a09694af5d 351 Pfam PF07836 DmpG-like communication domain 284 344 1.0E-29 T 12-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 ALFP_2706 ed20a4cd9c9147c4cafd21a09694af5d 351 SUPERFAMILY SSF89000 298 346 2.51E-18 T 12-10-2018 ALFP_0658 a281733b887930cd928c2643a3eab06e 150 Gene3D G3DSA:1.10.10.10 1 140 1.3E-35 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0658 a281733b887930cd928c2643a3eab06e 150 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 2.7E-33 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type ALFP_0658 a281733b887930cd928c2643a3eab06e 150 SUPERFAMILY SSF46785 2 130 1.75E-35 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0658 a281733b887930cd928c2643a3eab06e 150 Pfam PF02082 Transcriptional regulator 1 80 7.1E-25 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type ALFP_2193 bed3f6c03ca65daaba34c77ced5de08d 74 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 16 72 8.0E-23 T 12-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor ALFP_2193 bed3f6c03ca65daaba34c77ced5de08d 74 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 6 69 3.3E-31 T 12-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor ALFP_0309 e95e0340235a549c499f4435e2bf7ee8 251 Pfam PF12146 Serine aminopeptidase, S33 81 169 4.1E-12 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 ALFP_0309 e95e0340235a549c499f4435e2bf7ee8 251 SUPERFAMILY SSF53474 4 246 1.65E-41 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0309 e95e0340235a549c499f4435e2bf7ee8 251 Gene3D G3DSA:3.40.50.1820 2 249 1.8E-45 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0349 85f891b3bc57d6e155c2c61728c98b31 378 SUPERFAMILY SSF50969 28 361 3.14E-61 T 12-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like ALFP_0349 85f891b3bc57d6e155c2c61728c98b31 378 Pfam PF06433 Methylamine dehydrogenase heavy chain (MADH) 32 335 2.4E-46 T 12-10-2018 IPR009451 Amine dehydrogenase heavy chain GO:0030058|GO:0042597|GO:0055114 KEGG: 00680+1.4.9.1|MetaCyc: PWY-6967 ALFP_0349 85f891b3bc57d6e155c2c61728c98b31 378 Gene3D G3DSA:2.130.10.10 30 373 7.9E-128 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 ALFP_0149 5f4754571681a5b561cead1e6ef520df 115 Pfam PF08895 Domain of unknown function (DUF1840) 1 108 8.6E-32 T 12-10-2018 IPR014991 Protein of unknown function DUF1840 ALFP_3537 f6beb6cf948b11d61e578152e9c99361 419 Pfam PF07399 Putative Na+/H+ antiporter 5 418 4.8E-179 T 12-10-2018 IPR009978 Putative Na+/H+ antiporter ALFP_3152 d1d5ab38f9f87f0648bef5719a9f245b 193 Pfam PF04093 rod shape-determining protein MreD 33 173 2.3E-17 T 12-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 ALFP_3152 d1d5ab38f9f87f0648bef5719a9f245b 193 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 37 174 2.2E-21 T 12-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 ALFP_0455 1ab52ea2541b705d4ae629efa12bea77 636 Pfam PF01555 DNA methylase 121 459 1.3E-29 T 12-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 ALFP_0455 1ab52ea2541b705d4ae629efa12bea77 636 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 124 130 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 ALFP_0455 1ab52ea2541b705d4ae629efa12bea77 636 SUPERFAMILY SSF53335 89 476 6.18E-57 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_0455 1ab52ea2541b705d4ae629efa12bea77 636 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 121 133 1.3E-9 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 ALFP_0455 1ab52ea2541b705d4ae629efa12bea77 636 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 184 203 1.3E-9 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 ALFP_0455 1ab52ea2541b705d4ae629efa12bea77 636 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 427 441 1.3E-9 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 ALFP_0455 1ab52ea2541b705d4ae629efa12bea77 636 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 404 426 1.3E-9 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 ALFP_0455 1ab52ea2541b705d4ae629efa12bea77 636 PIRSF PIRSF015855 1 636 1.3E-178 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 ALFP_3103 5bfd23644d94c9cbacbba7dbd8c72d26 306 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 304 1.3E-85 T 12-10-2018 ALFP_3103 5bfd23644d94c9cbacbba7dbd8c72d26 306 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 1 304 32.875 T 12-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 ALFP_3103 5bfd23644d94c9cbacbba7dbd8c72d26 306 PIRSF PIRSF000401 1 305 2.7E-89 T 12-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 ALFP_3103 5bfd23644d94c9cbacbba7dbd8c72d26 306 Gene3D G3DSA:3.40.50.150 108 305 2.8E-58 T 12-10-2018 ALFP_3103 5bfd23644d94c9cbacbba7dbd8c72d26 306 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 298 5.8E-66 T 12-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 ALFP_3103 5bfd23644d94c9cbacbba7dbd8c72d26 306 SUPERFAMILY SSF53335 54 299 1.05E-38 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_3158 5420b7897d2e9c6c6fa08846d7b7ea49 224 SUPERFAMILY SSF53271 10 222 6.19E-46 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like ALFP_3158 5420b7897d2e9c6c6fa08846d7b7ea49 224 Pfam PF00156 Phosphoribosyl transferase domain 46 170 9.4E-16 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 ALFP_3158 5420b7897d2e9c6c6fa08846d7b7ea49 224 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 14 198 1.4E-61 T 12-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 ALFP_3158 5420b7897d2e9c6c6fa08846d7b7ea49 224 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 224 34.054 T 12-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 ALFP_3158 5420b7897d2e9c6c6fa08846d7b7ea49 224 Gene3D G3DSA:3.40.50.2020 5 224 3.6E-70 T 12-10-2018 ALFP_1372 3379ba97c51afdf7d59819362b277b99 383 SUPERFAMILY SSF53822 25 381 2.55E-74 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_1372 3379ba97c51afdf7d59819362b277b99 383 Pfam PF13458 Periplasmic binding protein 24 362 6.8E-50 T 12-10-2018 IPR028081 Leucine-binding protein domain ALFP_1372 3379ba97c51afdf7d59819362b277b99 383 Gene3D G3DSA:3.40.50.2300 27 364 3.6E-108 T 12-10-2018 ALFP_1372 3379ba97c51afdf7d59819362b277b99 383 Gene3D G3DSA:3.40.50.2300 142 372 3.6E-108 T 12-10-2018 ALFP_1467 08285355e2e475c9dafe54a9c8dc52c5 178 Gene3D G3DSA:1.25.40.600 2 177 2.3E-34 T 12-10-2018 IPR038523 AmiS/UreI transporter superfamily ALFP_1467 08285355e2e475c9dafe54a9c8dc52c5 178 Pfam PF02293 AmiS/UreI family transporter 10 176 2.1E-37 T 12-10-2018 IPR003211 AmiS/UreI transporter GO:0016020 ALFP_0643 75a82725582ed5d17b5d908812e5af4f 176 SUPERFAMILY SSF52833 39 170 7.35E-35 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_0643 75a82725582ed5d17b5d908812e5af4f 176 Pfam PF08534 Redoxin 34 160 1.2E-17 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 ALFP_0643 75a82725582ed5d17b5d908812e5af4f 176 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 25 169 3.6E-47 T 12-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 ALFP_0643 75a82725582ed5d17b5d908812e5af4f 176 Gene3D G3DSA:3.40.30.10 22 176 7.6E-43 T 12-10-2018 ALFP_1377 a4834fdfff82ff4f5bf6a2d2e55c6581 289 Pfam PF03473 MOSC domain 160 281 1.3E-18 T 12-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 ALFP_1377 a4834fdfff82ff4f5bf6a2d2e55c6581 289 SUPERFAMILY SSF141673 4 134 9.29E-37 T 12-10-2018 ALFP_1377 a4834fdfff82ff4f5bf6a2d2e55c6581 289 Pfam PF03476 MOSC N-terminal beta barrel domain 1 120 4.4E-31 T 12-10-2018 IPR005303 MOSC, N-terminal beta barrel KEGG: 00790+2.8.1.9|MetaCyc: PWY-5963 ALFP_1496 0d50100cb120634b902e4ef2648ec606 287 SUPERFAMILY SSF103481 194 284 1.09E-12 T 12-10-2018 ALFP_1496 0d50100cb120634b902e4ef2648ec606 287 Pfam PF00892 EamA-like transporter family 144 280 5.0E-14 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_1496 0d50100cb120634b902e4ef2648ec606 287 Pfam PF00892 EamA-like transporter family 4 125 1.4E-15 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_1496 0d50100cb120634b902e4ef2648ec606 287 SUPERFAMILY SSF103481 27 126 1.26E-12 T 12-10-2018 ALFP_0661 4a26eefc4db671beae60b5c637ff0451 556 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 92 256 3.7E-16 T 12-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like ALFP_1217 efb086a415e709eab25946a1f86dfdd4 261 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 15 253 1.1E-66 T 12-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 ALFP_1217 efb086a415e709eab25946a1f86dfdd4 261 Pfam PF01311 Bacterial export proteins, family 1 14 245 3.3E-69 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 ALFP_1217 efb086a415e709eab25946a1f86dfdd4 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 2.1E-28 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 ALFP_1217 efb086a415e709eab25946a1f86dfdd4 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 2.1E-28 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 ALFP_1217 efb086a415e709eab25946a1f86dfdd4 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 2.1E-28 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 ALFP_1217 efb086a415e709eab25946a1f86dfdd4 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 2.1E-28 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 ALFP_0488 fcee0e4c346197594e752256c5091e6e 308 Gene3D G3DSA:1.10.3470.10 1 308 6.1E-59 T 12-10-2018 IPR037294 ABC transporter, BtuC-like ALFP_0488 fcee0e4c346197594e752256c5091e6e 308 Pfam PF01032 FecCD transport family 4 304 2.6E-60 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 ALFP_0488 fcee0e4c346197594e752256c5091e6e 308 SUPERFAMILY SSF81345 2 304 6.67E-61 T 12-10-2018 IPR037294 ABC transporter, BtuC-like ALFP_1430 cf3c98ac66e7813173a77dd5a6cd26a8 141 Gene3D G3DSA:1.10.3420.10 2 141 5.5E-23 T 12-10-2018 IPR023292 NTP pyrophosphohydrolase-like domain superfamily ALFP_1382 29e36eff0fa712b81c978daec995109c 129 Pfam PF04304 Protein of unknown function (DUF454) 3 118 4.5E-40 T 12-10-2018 IPR007401 Protein of unknown function DUF454 ALFP_1382 29e36eff0fa712b81c978daec995109c 129 PIRSF PIRSF016789 2 123 4.0E-40 T 12-10-2018 IPR007401 Protein of unknown function DUF454 ALFP_1084 dce22d604be71026d79856f4ff8d19b5 264 SMART SM00062 29 258 6.3E-67 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_1084 dce22d604be71026d79856f4ff8d19b5 264 Gene3D G3DSA:3.40.190.10 115 215 4.0E-79 T 12-10-2018 ALFP_1084 dce22d604be71026d79856f4ff8d19b5 264 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 52 65 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site ALFP_1084 dce22d604be71026d79856f4ff8d19b5 264 SUPERFAMILY SSF53850 3 257 3.67E-68 T 12-10-2018 ALFP_1084 dce22d604be71026d79856f4ff8d19b5 264 Gene3D G3DSA:3.40.190.10 31 254 4.0E-79 T 12-10-2018 ALFP_1084 dce22d604be71026d79856f4ff8d19b5 264 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 30 256 1.5E-63 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_2843 827b5a860f893cb987d0f78d3feedba5 145 TIGRFAM TIGR02801 tolR: protein TolR 13 135 7.1E-39 T 12-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 ALFP_2843 827b5a860f893cb987d0f78d3feedba5 145 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 136 2.0E-26 T 12-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 ALFP_2843 827b5a860f893cb987d0f78d3feedba5 145 Gene3D G3DSA:3.30.420.270 57 129 1.5E-10 T 12-10-2018 ALFP_2029 61b3b71def521c64893ece648a0784f0 502 Pfam PF00924 Mechanosensitive ion channel 215 469 8.2E-45 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 ALFP_2029 61b3b71def521c64893ece648a0784f0 502 SUPERFAMILY SSF50182 257 324 2.88E-10 T 12-10-2018 IPR010920 LSM domain superfamily ALFP_0343 3e50e87ee750b6d05e57ce1ee3c732ed 301 PIRSF PIRSF001365 1 296 1.1E-55 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0343 3e50e87ee750b6d05e57ce1ee3c732ed 301 Pfam PF00701 Dihydrodipicolinate synthetase family 4 287 2.0E-34 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0343 3e50e87ee750b6d05e57ce1ee3c732ed 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 3.2E-6 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0343 3e50e87ee750b6d05e57ce1ee3c732ed 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 3.2E-6 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0343 3e50e87ee750b6d05e57ce1ee3c732ed 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 127 144 3.2E-6 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_0343 3e50e87ee750b6d05e57ce1ee3c732ed 301 SUPERFAMILY SSF51569 2 290 5.34E-56 T 12-10-2018 ALFP_0343 3e50e87ee750b6d05e57ce1ee3c732ed 301 Gene3D G3DSA:3.20.20.70 1 293 1.3E-78 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 ALFP_0343 3e50e87ee750b6d05e57ce1ee3c732ed 301 SMART SM01130 2 290 1.6E-46 T 12-10-2018 IPR002220 DapA-like GO:0016829 ALFP_2116 aa482fa682c3890b941a8cd9dda1825e 522 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 33 442 4.1E-63 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 ALFP_2116 aa482fa682c3890b941a8cd9dda1825e 522 Gene3D G3DSA:1.20.1730.10 20 520 1.2E-64 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily ALFP_2116 aa482fa682c3890b941a8cd9dda1825e 522 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 148 173 - T 12-10-2018 IPR018212 Sodium/solute symporter, conserved site ALFP_2116 aa482fa682c3890b941a8cd9dda1825e 522 Pfam PF00474 Sodium:solute symporter family 33 442 2.5E-99 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 ALFP_2412 ca3b715d02b3621cc15c82d2aa1f737d 288 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 267 1.7E-42 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_2412 ca3b715d02b3621cc15c82d2aa1f737d 288 Gene3D G3DSA:3.40.190.10 125 229 2.5E-64 T 12-10-2018 ALFP_2412 ca3b715d02b3621cc15c82d2aa1f737d 288 SUPERFAMILY SSF53850 30 266 3.89E-43 T 12-10-2018 ALFP_2412 ca3b715d02b3621cc15c82d2aa1f737d 288 Gene3D G3DSA:3.40.190.10 46 265 2.5E-64 T 12-10-2018 ALFP_2412 ca3b715d02b3621cc15c82d2aa1f737d 288 TIGRFAM TIGR02995 ectoine_ehuB: ectoine/hydroxyectoine ABC transporter solute-binding protein EhuB 20 286 2.8E-92 T 12-10-2018 IPR014337 Ectoine/Hydroxyectoine ABC transporter, substrate-binding protein EhuB GO:0033294|GO:0051470 ALFP_2412 ca3b715d02b3621cc15c82d2aa1f737d 288 SMART SM00062 39 271 1.8E-42 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ALFP_0605 c8a01eb3c90e0bbe8de9529dc3c7b862 369 Gene3D G3DSA:3.40.50.2000 6 178 3.7E-25 T 12-10-2018 ALFP_0605 c8a01eb3c90e0bbe8de9529dc3c7b862 369 Pfam PF00534 Glycosyl transferases group 1 184 343 6.9E-38 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 ALFP_0605 c8a01eb3c90e0bbe8de9529dc3c7b862 369 Pfam PF13439 Glycosyltransferase Family 4 10 169 3.3E-25 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 ALFP_0605 c8a01eb3c90e0bbe8de9529dc3c7b862 369 Gene3D G3DSA:3.40.50.2000 186 352 5.2E-43 T 12-10-2018 ALFP_0605 c8a01eb3c90e0bbe8de9529dc3c7b862 369 SUPERFAMILY SSF53756 3 364 2.9E-78 T 12-10-2018 ALFP_2624 21b20bdc3986cbf0a12b258df10b8aaf 142 Pfam PF08897 Domain of unknown function (DUF1841) 5 135 3.9E-55 T 12-10-2018 IPR014993 Protein of unknown function DUF1841 ALFP_2629 65fdc42a953da218541643c2d523a0de 390 Pfam PF05762 VWA domain containing CoxE-like protein 184 272 4.5E-11 T 12-10-2018 IPR008912 Uncharacterised protein family CoxE-like ALFP_0857 a942d21187d15f9ef9a3d2425efaf6af 439 PIRSF PIRSF006066 4 438 3.9E-69 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_0857 a942d21187d15f9ef9a3d2425efaf6af 439 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 12 428 1.2E-76 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_0857 a942d21187d15f9ef9a3d2425efaf6af 439 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 20 433 3.1E-88 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_2073 8fa6be8151917b92a2628edeed6e7e33 275 Pfam PF01435 Peptidase family M48 76 261 5.7E-38 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 ALFP_1528 9528328bc17b1b4dda7e646a521848d4 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.6E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1528 9528328bc17b1b4dda7e646a521848d4 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.6E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1528 9528328bc17b1b4dda7e646a521848d4 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 2.6E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1528 9528328bc17b1b4dda7e646a521848d4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.4E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1528 9528328bc17b1b4dda7e646a521848d4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.4E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1528 9528328bc17b1b4dda7e646a521848d4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.4E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1528 9528328bc17b1b4dda7e646a521848d4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.4E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1528 9528328bc17b1b4dda7e646a521848d4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.4E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1528 9528328bc17b1b4dda7e646a521848d4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 2.4E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1528 9528328bc17b1b4dda7e646a521848d4 245 SUPERFAMILY SSF51735 5 245 1.69E-72 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1528 9528328bc17b1b4dda7e646a521848d4 245 Gene3D G3DSA:3.40.50.720 1 244 2.7E-75 T 12-10-2018 ALFP_1528 9528328bc17b1b4dda7e646a521848d4 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 244 2.6E-55 T 12-10-2018 ALFP_3119 ee85dbc5e39ffda81ab5c8bbf0a2e29d 226 Pfam PF08543 Phosphomethylpyrimidine kinase 2 216 6.1E-18 T 12-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 ALFP_3119 ee85dbc5e39ffda81ab5c8bbf0a2e29d 226 Gene3D G3DSA:3.40.1190.20 1 203 1.3E-24 T 12-10-2018 IPR029056 Ribokinase-like ALFP_3119 ee85dbc5e39ffda81ab5c8bbf0a2e29d 226 SUPERFAMILY SSF53613 2 220 1.96E-20 T 12-10-2018 IPR029056 Ribokinase-like ALFP_2463 ca5908b43f9207c9a041dfb3b5a07bed 225 Gene3D G3DSA:3.40.50.12500 3 222 4.3E-55 T 12-10-2018 ALFP_1425 9056736f785ba756e100c5eb41a97e94 368 Pfam PF02653 Branched-chain amino acid transport system / permease component 49 344 1.2E-54 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_3244 501c3605f42ac2db04bffbe3b9bf9fde 229 SMART SM00749 49 113 19.0 T 12-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria ALFP_3244 501c3605f42ac2db04bffbe3b9bf9fde 229 SMART SM00749 128 191 1.3E-5 T 12-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria ALFP_3244 501c3605f42ac2db04bffbe3b9bf9fde 229 Pfam PF04972 BON domain 123 188 2.2E-13 T 12-10-2018 IPR007055 BON domain ALFP_3244 501c3605f42ac2db04bffbe3b9bf9fde 229 Pfam PF04972 BON domain 60 113 4.3E-12 T 12-10-2018 IPR007055 BON domain ALFP_0594 a5ff821d331c6534c0642373be04cfd5 291 Gene3D G3DSA:2.40.230.20 54 277 4.6E-8 T 12-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 ALFP_0594 a5ff821d331c6534c0642373be04cfd5 291 SUPERFAMILY SSF111364 27 291 1.23E-45 T 12-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 ALFP_2763 114f746118a988474dc6f09d83fd4d64 182 Gene3D G3DSA:3.30.1360.200 50 182 1.6E-7 T 12-10-2018 ALFP_0168 a3e81cc844079ac1d5d506b730990d21 207 Pfam PF01810 LysE type translocator 16 203 3.0E-32 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 ALFP_0168 a3e81cc844079ac1d5d506b730990d21 207 PIRSF PIRSF006324 1 207 8.8E-51 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 ALFP_0352 9704daac618a807c36a24b1cdb3687e7 182 Gene3D G3DSA:2.60.30.10 48 182 1.9E-69 T 12-10-2018 IPR036560 Methylamine/Aralkylamine dehydrogenase light chain superfamily GO:0009308|GO:0016638|GO:0042597|GO:0055114 KEGG: 00680+1.4.9.1|MetaCyc: PWY-6967 ALFP_0352 9704daac618a807c36a24b1cdb3687e7 182 SUPERFAMILY SSF57561 68 180 4.32E-54 T 12-10-2018 IPR036560 Methylamine/Aralkylamine dehydrogenase light chain superfamily GO:0009308|GO:0016638|GO:0042597|GO:0055114 KEGG: 00680+1.4.9.1|MetaCyc: PWY-6967 ALFP_0352 9704daac618a807c36a24b1cdb3687e7 182 PIRSF PIRSF000192 2 181 2.5E-53 T 12-10-2018 IPR016008 Amine dehydrogenase light chain GO:0009308|GO:0030058|GO:0055114 KEGG: 00680+1.4.9.1|MetaCyc: PWY-6967 ALFP_0352 9704daac618a807c36a24b1cdb3687e7 182 Pfam PF02975 Methylamine dehydrogenase, L chain 70 178 5.7E-50 T 12-10-2018 IPR013504 Methylamine/Aralkylamine dehydrogenase light chain, C-terminal domain GO:0009308|GO:0016638|GO:0042597|GO:0055114 KEGG: 00680+1.4.9.1|MetaCyc: PWY-6967 ALFP_2406 ca810ef9950af809f5546974ecf42e50 270 Pfam PF01925 Sulfite exporter TauE/SafE 10 262 1.9E-49 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 ALFP_1977 8e556096cfcb030aec356edb20f0a0d7 166 SUPERFAMILY SSF158442 12 159 5.62E-22 T 12-10-2018 IPR023380 DsbB-like superfamily ALFP_1977 8e556096cfcb030aec356edb20f0a0d7 166 Pfam PF02600 Disulfide bond formation protein DsbB 11 157 5.1E-27 T 12-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 ALFP_1977 8e556096cfcb030aec356edb20f0a0d7 166 Gene3D G3DSA:1.20.1550.10 1 165 8.6E-24 T 12-10-2018 IPR023380 DsbB-like superfamily ALFP_3617 2cf5e0ae43873798e1249356e7fade45 121 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 26.738 T 12-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3617 2cf5e0ae43873798e1249356e7fade45 121 Gene3D G3DSA:1.10.8.50 1 71 3.9E-26 T 12-10-2018 ALFP_3617 2cf5e0ae43873798e1249356e7fade45 121 Gene3D G3DSA:4.10.910.10 72 117 2.4E-23 T 12-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3617 2cf5e0ae43873798e1249356e7fade45 121 PIRSF PIRSF002134 1 121 5.5E-40 T 12-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3617 2cf5e0ae43873798e1249356e7fade45 121 SUPERFAMILY SSF46946 2 114 8.01E-43 T 12-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 ALFP_3617 2cf5e0ae43873798e1249356e7fade45 121 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 1.1E-50 T 12-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ALFP_3617 2cf5e0ae43873798e1249356e7fade45 121 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 12-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3617 2cf5e0ae43873798e1249356e7fade45 121 Pfam PF00416 Ribosomal protein S13/S18 3 60 8.1E-14 T 12-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_3617 2cf5e0ae43873798e1249356e7fade45 121 Pfam PF00416 Ribosomal protein S13/S18 63 108 2.6E-16 T 12-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 ALFP_2192 b23d07943c0b046bef59fbe2e49673cc 220 Pfam PF01738 Dienelactone hydrolase family 14 218 7.3E-44 T 12-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 ALFP_2192 b23d07943c0b046bef59fbe2e49673cc 220 SUPERFAMILY SSF53474 4 219 1.09E-38 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2192 b23d07943c0b046bef59fbe2e49673cc 220 Gene3D G3DSA:3.40.50.1820 2 217 2.7E-49 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2342 ffbc4638748bd48c3efd9548f6e42908 134 Gene3D G3DSA:3.30.1330.40 4 133 1.2E-38 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_2342 ffbc4638748bd48c3efd9548f6e42908 134 SUPERFAMILY SSF55298 10 132 5.5E-34 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_2342 ffbc4638748bd48c3efd9548f6e42908 134 Pfam PF01042 Endoribonuclease L-PSP 15 129 3.6E-23 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 ALFP_2970 f955bbc5edcdd2ac35427a8ed49550f0 270 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 13 270 43.242 T 12-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 ALFP_2970 f955bbc5edcdd2ac35427a8ed49550f0 270 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 183 270 4.9E-27 T 12-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 ALFP_2970 f955bbc5edcdd2ac35427a8ed49550f0 270 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 16 270 1.7E-101 T 12-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 ALFP_2970 f955bbc5edcdd2ac35427a8ed49550f0 270 PIRSF PIRSF005457 10 270 1.5E-98 T 12-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 ALFP_2970 f955bbc5edcdd2ac35427a8ed49550f0 270 Pfam PF00753 Metallo-beta-lactamase superfamily 26 182 6.3E-16 T 12-10-2018 IPR001279 Metallo-beta-lactamase ALFP_2970 f955bbc5edcdd2ac35427a8ed49550f0 270 SMART SM00849 23 182 4.3E-30 T 12-10-2018 IPR001279 Metallo-beta-lactamase ALFP_2970 f955bbc5edcdd2ac35427a8ed49550f0 270 SUPERFAMILY SSF56281 14 270 4.06E-64 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_2970 f955bbc5edcdd2ac35427a8ed49550f0 270 Gene3D G3DSA:3.60.15.10 9 270 1.4E-83 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like ALFP_3319 0af4bf77a6425c64de27e6b32d337f01 112 Pfam PF04341 Protein of unknown function, DUF485 14 98 9.3E-14 T 12-10-2018 IPR007436 Protein of unknown function DUF485 ALFP_0082 d09cc478032e432493808551377677f1 167 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 35 164 6.4E-21 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_2362 8da9e8e20aed9c7a9ba0361e120d1bab 582 Pfam PF03235 Protein of unknown function DUF262 9 264 1.6E-32 T 12-10-2018 IPR004919 Domain of unknown function DUF262 ALFP_3045 16f53d2c7f420def5c714bf1bebde36d 366 Pfam PF03743 Bacterial conjugation TrbI-like protein 178 354 5.6E-50 T 12-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI ALFP_3045 16f53d2c7f420def5c714bf1bebde36d 366 Gene3D G3DSA:2.40.128.260 297 363 4.0E-10 T 12-10-2018 ALFP_3045 16f53d2c7f420def5c714bf1bebde36d 366 Gene3D G3DSA:2.40.128.260 172 296 1.6E-39 T 12-10-2018 ALFP_0610 619516a54a9b2a95c99185a2f9c1dbd1 228 Pfam PF01569 PAP2 superfamily 90 218 1.9E-14 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase ALFP_0610 619516a54a9b2a95c99185a2f9c1dbd1 228 Gene3D G3DSA:1.20.144.10 6 228 1.8E-12 T 12-10-2018 ALFP_0610 619516a54a9b2a95c99185a2f9c1dbd1 228 SUPERFAMILY SSF48317 5 223 2.62E-16 T 12-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily ALFP_3205 b6d4782232a3e7b249642154533f17dd 226 Gene3D G3DSA:3.40.50.150 3 224 1.9E-50 T 12-10-2018 ALFP_3205 b6d4782232a3e7b249642154533f17dd 226 SUPERFAMILY SSF53335 8 217 5.68E-39 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_3205 b6d4782232a3e7b249642154533f17dd 226 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 16 207 1.5E-37 T 12-10-2018 ALFP_3162 0d34c86cc5d87bc2c0d330dd011a03f9 264 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 3 258 3.0E-68 T 12-10-2018 ALFP_3162 0d34c86cc5d87bc2c0d330dd011a03f9 264 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 2 260 2.5E-73 T 12-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 ALFP_3162 0d34c86cc5d87bc2c0d330dd011a03f9 264 Gene3D G3DSA:3.60.10.10 1 263 6.1E-82 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily ALFP_3162 0d34c86cc5d87bc2c0d330dd011a03f9 264 SUPERFAMILY SSF56219 2 261 7.07E-72 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily ALFP_3162 0d34c86cc5d87bc2c0d330dd011a03f9 264 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 6 253 5.5E-19 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase ALFP_3260 24a4d950e7300205a0ceb7b9d5df4ba9 190 Gene3D G3DSA:3.40.50.2020 20 188 1.0E-22 T 12-10-2018 ALFP_3260 24a4d950e7300205a0ceb7b9d5df4ba9 190 SUPERFAMILY SSF53271 8 186 1.84E-27 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like ALFP_3260 24a4d950e7300205a0ceb7b9d5df4ba9 190 Pfam PF00156 Phosphoribosyl transferase domain 83 181 5.9E-10 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 ALFP_0383 2bde8c577288f2b72fc150cc3cfdfe06 125 Gene3D G3DSA:3.30.1330.40 5 120 7.7E-34 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_0383 2bde8c577288f2b72fc150cc3cfdfe06 125 Pfam PF01042 Endoribonuclease L-PSP 14 119 2.6E-27 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 ALFP_0383 2bde8c577288f2b72fc150cc3cfdfe06 125 SUPERFAMILY SSF55298 12 123 1.88E-33 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 ALFP_0072 3008d047dd3f7afb4255fd4e2e96e6dd 332 SUPERFAMILY SSF56529 103 327 1.7E-70 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 ALFP_0072 3008d047dd3f7afb4255fd4e2e96e6dd 332 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 115 325 2.8E-68 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 ALFP_0072 3008d047dd3f7afb4255fd4e2e96e6dd 332 Gene3D G3DSA:3.90.850.10 109 332 6.1E-79 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 ALFP_1884 1ee511355ad2eb4caa11a4ac32c41832 263 Pfam PF00210 Ferritin-like domain 125 263 1.0E-30 T 12-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 ALFP_1884 1ee511355ad2eb4caa11a4ac32c41832 263 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 169 185 7.8E-12 T 12-10-2018 IPR002177 DNA-binding protein Dps ALFP_1884 1ee511355ad2eb4caa11a4ac32c41832 263 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 240 258 7.8E-12 T 12-10-2018 IPR002177 DNA-binding protein Dps ALFP_1884 1ee511355ad2eb4caa11a4ac32c41832 263 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 145 161 7.8E-12 T 12-10-2018 IPR002177 DNA-binding protein Dps ALFP_1884 1ee511355ad2eb4caa11a4ac32c41832 263 ProSitePatterns PS00819 Dps protein family signature 2. 171 185 - T 12-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 ALFP_1884 1ee511355ad2eb4caa11a4ac32c41832 263 Gene3D G3DSA:1.20.1260.10 94 263 3.4E-57 T 12-10-2018 IPR012347 Ferritin-like ALFP_1884 1ee511355ad2eb4caa11a4ac32c41832 263 SUPERFAMILY SSF47240 111 263 1.56E-46 T 12-10-2018 IPR009078 Ferritin-like superfamily ALFP_3079 c51a7e7cc68a6578c4356354e63d4b1a 222 SUPERFAMILY SSF53474 13 221 3.02E-50 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_3079 c51a7e7cc68a6578c4356354e63d4b1a 222 Gene3D G3DSA:3.40.50.1820 3 222 2.2E-68 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_3079 c51a7e7cc68a6578c4356354e63d4b1a 222 Pfam PF02230 Phospholipase/Carboxylesterase 10 220 2.9E-53 T 12-10-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 ALFP_1444 b09341d6b3b8de67d92733324f854224 658 Pfam PF09423 PhoD-like phosphatase 320 571 3.2E-7 T 12-10-2018 IPR018946 Alkaline phosphatase D-related ALFP_1444 b09341d6b3b8de67d92733324f854224 658 Gene3D G3DSA:3.60.21.70 291 570 3.5E-7 T 12-10-2018 IPR038607 PhoD-like superfamily ALFP_1444 b09341d6b3b8de67d92733324f854224 658 SUPERFAMILY SSF56300 170 546 1.77E-7 T 12-10-2018 ALFP_0325 e2df20b1ff4523551b51d817e8e34302 195 Gene3D G3DSA:1.10.357.10 2 187 2.3E-23 T 12-10-2018 ALFP_0325 e2df20b1ff4523551b51d817e8e34302 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 48 5.4E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ALFP_0325 e2df20b1ff4523551b51d817e8e34302 195 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 87 180 3.8E-13 T 12-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal ALFP_0325 e2df20b1ff4523551b51d817e8e34302 195 SUPERFAMILY SSF48498 80 181 1.5E-11 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily ALFP_0325 e2df20b1ff4523551b51d817e8e34302 195 SUPERFAMILY SSF46689 3 66 1.85E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_3259 4bd966a295e82aebf084487d336b1239 156 Gene3D G3DSA:3.40.1280.10 1 156 5.3E-61 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal ALFP_3259 4bd966a295e82aebf084487d336b1239 156 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 153 29.958 T 12-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 ALFP_3259 4bd966a295e82aebf084487d336b1239 156 Pfam PF00588 SpoU rRNA Methylase family 2 143 3.9E-32 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 ALFP_3259 4bd966a295e82aebf084487d336b1239 156 PIRSF PIRSF029256 1 156 7.9E-59 T 12-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 ALFP_3259 4bd966a295e82aebf084487d336b1239 156 SUPERFAMILY SSF75217 1 153 5.49E-41 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases ALFP_0411 4551b9509fe411947cc10d9d42240c16 225 Gene3D G3DSA:3.30.450.40 42 216 1.8E-44 T 12-10-2018 IPR029016 GAF-like domain superfamily ALFP_0411 4551b9509fe411947cc10d9d42240c16 225 SUPERFAMILY SSF55781 80 212 5.56E-7 T 12-10-2018 ALFP_0411 4551b9509fe411947cc10d9d42240c16 225 Pfam PF04340 Protein of unknown function, DUF484 5 212 1.2E-30 T 12-10-2018 IPR007435 Protein of unknown function DUF484 ALFP_0043 fdcc2b5f9e8609f00a54611b6f3f2bc8 266 Gene3D G3DSA:3.40.50.1820 1 265 3.6E-54 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0043 fdcc2b5f9e8609f00a54611b6f3f2bc8 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 2.1E-11 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_0043 fdcc2b5f9e8609f00a54611b6f3f2bc8 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 46 61 2.1E-11 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_0043 fdcc2b5f9e8609f00a54611b6f3f2bc8 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 203 217 2.1E-11 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_0043 fdcc2b5f9e8609f00a54611b6f3f2bc8 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 105 2.1E-11 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_0043 fdcc2b5f9e8609f00a54611b6f3f2bc8 266 SUPERFAMILY SSF53474 1 258 3.99E-56 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_0043 fdcc2b5f9e8609f00a54611b6f3f2bc8 266 Pfam PF12697 Alpha/beta hydrolase family 23 254 2.6E-23 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 ALFP_0535 1220d7af051b36583870bacb6089ebfd 300 SUPERFAMILY SSF103481 44 149 4.97E-13 T 12-10-2018 ALFP_0535 1220d7af051b36583870bacb6089ebfd 300 SUPERFAMILY SSF103481 204 297 2.09E-7 T 12-10-2018 ALFP_0535 1220d7af051b36583870bacb6089ebfd 300 Gene3D G3DSA:1.10.3730.20 40 149 5.6E-6 T 12-10-2018 ALFP_0535 1220d7af051b36583870bacb6089ebfd 300 Pfam PF00892 EamA-like transporter family 11 144 3.6E-8 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_0172 9e1697615e2ed9b90623f2c77866cb94 165 Gene3D G3DSA:3.10.310.50 19 162 4.3E-35 T 12-10-2018 ALFP_0172 9e1697615e2ed9b90623f2c77866cb94 165 Pfam PF04536 TPM domain 24 139 3.7E-11 T 12-10-2018 IPR007621 TPM domain ALFP_3056 dd94db9c94e00228b93cbcb46b9bb18f 286 Gene3D G3DSA:2.60.120.620 1 233 1.6E-56 T 12-10-2018 ALFP_3056 dd94db9c94e00228b93cbcb46b9bb18f 286 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 11 218 1.3E-39 T 12-10-2018 IPR008775 Phytanoyl-CoA dioxygenase ALFP_3056 dd94db9c94e00228b93cbcb46b9bb18f 286 SUPERFAMILY SSF51197 4 261 5.59E-55 T 12-10-2018 ALFP_1824 d1c9bd8c628cb873e845b7c873584075 455 Pfam PF02386 Cation transport protein 47 435 1.4E-50 T 12-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 ALFP_0109 d3685e57c50dd258a2d21bfc1199e671 390 Gene3D G3DSA:3.20.20.30 9 367 7.1E-140 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 ALFP_0109 d3685e57c50dd258a2d21bfc1199e671 390 SUPERFAMILY SSF51679 11 362 2.36E-98 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 ALFP_0109 d3685e57c50dd258a2d21bfc1199e671 390 Pfam PF00296 Luciferase-like monooxygenase 11 332 6.4E-87 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ALFP_0109 d3685e57c50dd258a2d21bfc1199e671 390 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 10 355 4.6E-177 T 12-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 ALFP_0109 d3685e57c50dd258a2d21bfc1199e671 390 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 9 381 72.327 T 12-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 ALFP_1062 f6f9da2b510db200a5e8e99b9bdb0a0f 431 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 419 2.8E-78 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_1062 f6f9da2b510db200a5e8e99b9bdb0a0f 431 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 425 9.3E-94 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_1062 f6f9da2b510db200a5e8e99b9bdb0a0f 431 PIRSF PIRSF006066 1 431 1.4E-103 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_2786 a3226663bfa5f2760baeec4863c7ed3a 200 Pfam PF11161 Protein of unknown function (DUF2946) 1 150 4.7E-52 T 12-10-2018 IPR021332 Protein of unknown function DUF2944 ALFP_0924 bb314aecaf1817e3a5c62b366a99800c 102 Pfam PF04341 Protein of unknown function, DUF485 11 97 4.8E-33 T 12-10-2018 IPR007436 Protein of unknown function DUF485 ALFP_1619 36a1c79aaa2ae99da76cebe9ff6895a0 595 SUPERFAMILY SSF102588 2 193 1.12E-8 T 12-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 ALFP_1619 36a1c79aaa2ae99da76cebe9ff6895a0 595 SUPERFAMILY SSF89372 247 485 7.06E-15 T 12-10-2018 ALFP_1619 36a1c79aaa2ae99da76cebe9ff6895a0 595 Gene3D G3DSA:3.40.50.10320 2 236 2.4E-5 T 12-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 ALFP_1619 36a1c79aaa2ae99da76cebe9ff6895a0 595 Pfam PF02585 GlcNAc-PI de-N-acetylase 2 184 3.6E-9 T 12-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 ALFP_2505 b0a156aab717a05717002bf78d9a29ad 115 Pfam PF10087 Uncharacterized protein conserved in bacteria (DUF2325) 10 101 1.5E-16 T 12-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 ALFP_2505 b0a156aab717a05717002bf78d9a29ad 115 PIRSF PIRSF020408 9 112 3.9E-40 T 12-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 ALFP_0597 b9d501f9c8c4374253ec1bb7e8ac26bf 263 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 33 211 1.4E-47 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal ALFP_0597 b9d501f9c8c4374253ec1bb7e8ac26bf 263 Gene3D G3DSA:3.40.225.10 19 263 1.3E-77 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily ALFP_0597 b9d501f9c8c4374253ec1bb7e8ac26bf 263 SUPERFAMILY SSF53639 23 233 4.12E-62 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily ALFP_0597 b9d501f9c8c4374253ec1bb7e8ac26bf 263 SMART SM01007 31 211 4.0E-61 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal ALFP_1200 42d331c3dcc6b6af169243c131f6b9e0 214 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 78 212 3.3E-34 T 12-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal ALFP_1200 42d331c3dcc6b6af169243c131f6b9e0 214 Gene3D G3DSA:2.30.30.760 156 214 2.4E-13 T 12-10-2018 ALFP_1200 42d331c3dcc6b6af169243c131f6b9e0 214 Pfam PF13144 Chaperone for flagella basal body P-ring formation 16 212 8.6E-44 T 12-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal ALFP_1200 42d331c3dcc6b6af169243c131f6b9e0 214 SMART SM00858 90 152 7.7E-6 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 ALFP_0547 a4d8a3a0f9966140b218dc9e084b510e 255 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 29 241 31.247 T 12-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 ALFP_0547 a4d8a3a0f9966140b218dc9e084b510e 255 Gene3D G3DSA:3.40.50.150 36 245 4.9E-68 T 12-10-2018 ALFP_0547 a4d8a3a0f9966140b218dc9e084b510e 255 Pfam PF02390 Putative methyltransferase 68 236 1.5E-57 T 12-10-2018 ALFP_0547 a4d8a3a0f9966140b218dc9e084b510e 255 SUPERFAMILY SSF53335 23 240 1.33E-37 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_0547 a4d8a3a0f9966140b218dc9e084b510e 255 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 59 240 1.5E-58 T 12-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 ALFP_3052 decc04a3c27cf04225424a3b5d3bbf87 382 Gene3D G3DSA:1.10.8.80 43 157 6.7E-117 T 12-10-2018 ALFP_3052 decc04a3c27cf04225424a3b5d3bbf87 382 Pfam PF10412 Type IV secretion-system coupling protein DNA-binding domain 3 351 1.4E-86 T 12-10-2018 IPR019476 Type IV secretion system coupling protein TraD, DNA-binding domain ALFP_3052 decc04a3c27cf04225424a3b5d3bbf87 382 SUPERFAMILY SSF52540 2 363 3.29E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3052 decc04a3c27cf04225424a3b5d3bbf87 382 Gene3D G3DSA:3.40.50.300 2 351 6.7E-117 T 12-10-2018 ALFP_2637 9701bafa96056a9807aa6880e82a15d0 444 Gene3D G3DSA:3.30.450.380 13 177 1.3E-33 T 12-10-2018 ALFP_2637 9701bafa96056a9807aa6880e82a15d0 444 Gene3D G3DSA:3.40.50.300 178 434 5.2E-69 T 12-10-2018 ALFP_2637 9701bafa96056a9807aa6880e82a15d0 444 SUPERFAMILY SSF52540 62 396 1.58E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_2637 9701bafa96056a9807aa6880e82a15d0 444 Pfam PF00437 Type II/IV secretion system protein 82 358 2.6E-76 T 12-10-2018 IPR001482 Type II/IV secretion system protein ALFP_2096 c73c412f51f369601c3003c9871cf033 266 Gene3D G3DSA:3.40.50.10090 35 171 1.9E-46 T 12-10-2018 ALFP_2096 c73c412f51f369601c3003c9871cf033 266 Gene3D G3DSA:3.40.50.10090 6 237 1.9E-46 T 12-10-2018 ALFP_2096 c73c412f51f369601c3003c9871cf033 266 Pfam PF02602 Uroporphyrinogen-III synthase HemD 17 240 1.5E-33 T 12-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 ALFP_2096 c73c412f51f369601c3003c9871cf033 266 SUPERFAMILY SSF69618 5 242 1.31E-40 T 12-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 ALFP_0133 2d4f6f0c65330ea33960b826dc3c08a3 835 Pfam PF09925 Predicted membrane protein (DUF2157) 8 116 1.5E-20 T 12-10-2018 IPR018677 Domain of unknown function DUF2157 ALFP_0133 2d4f6f0c65330ea33960b826dc3c08a3 835 Pfam PF14351 Domain of unknown function (DUF4401) 321 636 5.9E-15 T 12-10-2018 IPR025513 Domain of unknown function DUF4401 ALFP_0133 2d4f6f0c65330ea33960b826dc3c08a3 835 Pfam PF14345 GDYXXLXY protein 667 826 3.3E-30 T 12-10-2018 IPR025833 GDYXXLXY protein ALFP_3114 fde4fd3e41f0c9f59c35e79627da9955 386 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 365 8.5E-61 T 12-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 ALFP_3114 fde4fd3e41f0c9f59c35e79627da9955 386 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 368 2.2E-88 T 12-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 ALFP_0626 d445db481bc48d1eea8d7b5068729877 56 Pfam PF06296 RelE toxin of RelE / RelB toxin-antitoxin system 1 47 7.7E-11 T 12-10-2018 IPR009387 Toxin HigB-2 ALFP_0651 89026285baba13b34a7a53db4032c05b 389 Gene3D G3DSA:3.40.50.2300 24 351 2.2E-93 T 12-10-2018 ALFP_0651 89026285baba13b34a7a53db4032c05b 389 SUPERFAMILY SSF53822 23 386 1.32E-83 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_0651 89026285baba13b34a7a53db4032c05b 389 Pfam PF13458 Periplasmic binding protein 23 361 1.2E-70 T 12-10-2018 IPR028081 Leucine-binding protein domain ALFP_0651 89026285baba13b34a7a53db4032c05b 389 Gene3D G3DSA:3.40.50.2300 141 361 2.2E-93 T 12-10-2018 ALFP_0324 9c6c996fb398d9950b8e3388867fd2f3 367 Pfam PF04235 Protein of unknown function (DUF418) 208 363 2.2E-24 T 12-10-2018 IPR007349 Domain of unknown function DUF418 ALFP_3713 ca3b15f686910c4ff5dca08fdbb90405 324 Gene3D G3DSA:3.40.50.1100 11 310 4.5E-91 T 12-10-2018 ALFP_3713 ca3b15f686910c4ff5dca08fdbb90405 324 SUPERFAMILY SSF53686 9 312 8.91E-78 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme ALFP_3713 ca3b15f686910c4ff5dca08fdbb90405 324 Gene3D G3DSA:3.40.50.1100 52 147 4.5E-91 T 12-10-2018 ALFP_3713 ca3b15f686910c4ff5dca08fdbb90405 324 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 20 305 1.8E-67 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme ALFP_3215 f7ebb1ff18814368d8985ba48fa6787c 143 Gene3D G3DSA:3.10.180.10 2 139 9.0E-36 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_3215 f7ebb1ff18814368d8985ba48fa6787c 143 SUPERFAMILY SSF54593 8 138 8.66E-24 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_3215 f7ebb1ff18814368d8985ba48fa6787c 143 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 131 2.5E-4 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain ALFP_0777 905fa2567f82743f2c16b7a803abb05b 349 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 21 335 2.5E-57 T 12-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 ALFP_0037 6d730e257627b4a87d8e982b434bbaa6 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 12 28 1.0E-8 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_0037 6d730e257627b4a87d8e982b434bbaa6 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 34 50 1.0E-8 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_0037 6d730e257627b4a87d8e982b434bbaa6 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 247 265 1.0E-8 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 ALFP_0037 6d730e257627b4a87d8e982b434bbaa6 372 Gene3D G3DSA:3.40.50.2300 134 265 1.6E-70 T 12-10-2018 ALFP_0037 6d730e257627b4a87d8e982b434bbaa6 372 Gene3D G3DSA:3.40.50.2300 13 333 1.6E-70 T 12-10-2018 ALFP_0037 6d730e257627b4a87d8e982b434bbaa6 372 SUPERFAMILY SSF53822 11 366 3.87E-70 T 12-10-2018 IPR028082 Periplasmic binding protein-like I ALFP_0037 6d730e257627b4a87d8e982b434bbaa6 372 Pfam PF13458 Periplasmic binding protein 11 362 7.9E-61 T 12-10-2018 IPR028081 Leucine-binding protein domain ALFP_1056 88a0b087a3ab002ec82bc1a167c0e8ae 98 Gene3D G3DSA:1.10.10.10 1 97 3.0E-31 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1056 88a0b087a3ab002ec82bc1a167c0e8ae 98 Pfam PF01638 HxlR-like helix-turn-helix 11 85 3.7E-23 T 12-10-2018 IPR002577 Helix-turn-helix, HxlR type ALFP_1056 88a0b087a3ab002ec82bc1a167c0e8ae 98 SUPERFAMILY SSF46785 5 94 4.72E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_2733 a53a042a18cffd7d854a55cab1d03dcf 317 Gene3D G3DSA:1.10.620.20 4 303 4.7E-89 T 12-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 ALFP_2733 a53a042a18cffd7d854a55cab1d03dcf 317 Pfam PF11583 P-aminobenzoate N-oxygenase AurF 10 289 2.0E-51 T 12-10-2018 IPR025859 P-aminobenzoate N-oxygenase AurF ALFP_1281 a7cf10f2930b41410ebeff6a3c25edba 365 Gene3D G3DSA:3.40.190.10 147 319 2.6E-93 T 12-10-2018 ALFP_1281 a7cf10f2930b41410ebeff6a3c25edba 365 Gene3D G3DSA:3.40.190.170 28 332 2.6E-93 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_1281 a7cf10f2930b41410ebeff6a3c25edba 365 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 38 314 1.8E-38 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_1281 a7cf10f2930b41410ebeff6a3c25edba 365 PIRSF PIRSF039026 1 348 8.9E-87 T 12-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like ALFP_1021 8d16277d91a2c7ac6890c4baa7d67315 405 Pfam PF11062 Protein of unknown function (DUF2863) 14 401 9.0E-129 T 12-10-2018 IPR021292 Protein of unknown function DUF2863 ALFP_0653 b8640275412c4e177052c3ebe6037d5b 320 Pfam PF02653 Branched-chain amino acid transport system / permease component 31 293 1.7E-37 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_0875 046449c0d32f6e8b49dcdc51e3b5482a 882 SUPERFAMILY SSF52540 218 563 6.77E-27 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0875 046449c0d32f6e8b49dcdc51e3b5482a 882 Pfam PF12705 PD-(D/E)XK nuclease superfamily 616 849 9.7E-15 T 12-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type ALFP_0875 046449c0d32f6e8b49dcdc51e3b5482a 882 TIGRFAM TIGR03623 TIGR03623: probable DNA repair protein 20 870 5.9E-195 T 12-10-2018 IPR019925 DNA repair protein, predicted ALFP_1170 477de2bd02672367893e06749966e35d 136 Pfam PF04143 Sulphur transport 40 132 7.1E-7 T 12-10-2018 IPR007272 Sulphur transport domain ALFP_2044 b1128910b73e2ffb1161359e209ac8a2 176 Gene3D G3DSA:3.40.30.10 2 151 9.7E-30 T 12-10-2018 ALFP_2044 b1128910b73e2ffb1161359e209ac8a2 176 SUPERFAMILY SSF52833 15 153 8.09E-21 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_2044 b1128910b73e2ffb1161359e209ac8a2 176 Pfam PF08534 Redoxin 15 132 2.7E-8 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 ALFP_3077 65849dfaa8455f3aac75da08271bfbf1 455 SUPERFAMILY SSF111283 17 454 4.19E-121 T 12-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 ALFP_3077 65849dfaa8455f3aac75da08271bfbf1 455 Gene3D G3DSA:3.30.2290.10 10 237 3.5E-86 T 12-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal ALFP_3077 65849dfaa8455f3aac75da08271bfbf1 455 Pfam PF01523 Putative modulator of DNA gyrase 37 328 3.2E-58 T 12-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 ALFP_1114 337dd9b11a455a71c4cfa144739c6c72 428 Pfam PF01593 Flavin containing amine oxidoreductase 11 426 7.4E-36 T 12-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 ALFP_1114 337dd9b11a455a71c4cfa144739c6c72 428 TIGRFAM TIGR03467 HpnE: squalene-associated FAD-dependent desaturase 3 427 3.6E-115 T 12-10-2018 IPR017830 Hydroxysqualene dehydroxylase HpnE MetaCyc: PWY-7072 ALFP_1114 337dd9b11a455a71c4cfa144739c6c72 428 SUPERFAMILY SSF51905 1 427 1.0E-51 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_1114 337dd9b11a455a71c4cfa144739c6c72 428 Gene3D G3DSA:3.50.50.60 1 428 1.0E-35 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily ALFP_2748 9ca5a9ecaa19e9320f90972a956c26e9 286 SUPERFAMILY SSF103481 41 139 2.35E-7 T 12-10-2018 ALFP_2748 9ca5a9ecaa19e9320f90972a956c26e9 286 Pfam PF00892 EamA-like transporter family 148 281 1.0E-10 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_2748 9ca5a9ecaa19e9320f90972a956c26e9 286 Pfam PF00892 EamA-like transporter family 12 136 1.1E-8 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_2748 9ca5a9ecaa19e9320f90972a956c26e9 286 SUPERFAMILY SSF103481 192 283 3.66E-11 T 12-10-2018 ALFP_0470 9db4cf028ae825df07fd7618ff4beb97 453 Pfam PF07690 Major Facilitator Superfamily 29 336 1.7E-30 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_0470 9db4cf028ae825df07fd7618ff4beb97 453 ProSitePatterns PS00217 Sugar transport proteins signature 2. 120 145 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ALFP_0470 9db4cf028ae825df07fd7618ff4beb97 453 ProSitePatterns PS00216 Sugar transport proteins signature 1. 78 94 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ALFP_0470 9db4cf028ae825df07fd7618ff4beb97 453 SUPERFAMILY SSF103473 11 434 2.62E-75 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_0470 9db4cf028ae825df07fd7618ff4beb97 453 Gene3D G3DSA:1.20.1250.20 18 434 1.0E-66 T 12-10-2018 ALFP_3037 8abf0f3473a20ccf8634b6e1918548c8 119 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 21 100 1.5E-18 T 12-10-2018 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB ALFP_2871 8bc7e7044b93b741e3d01e5878fcba21 469 Pfam PF07063 Domain of unknown function (DUF1338) 18 416 2.3E-116 T 12-10-2018 IPR009770 Domain of unknown function DUF1338 ALFP_2871 8bc7e7044b93b741e3d01e5878fcba21 469 SMART SM01150 20 416 4.9E-206 T 12-10-2018 IPR009770 Domain of unknown function DUF1338 ALFP_2871 8bc7e7044b93b741e3d01e5878fcba21 469 Gene3D G3DSA:3.10.180.80 10 453 8.2E-188 T 12-10-2018 ALFP_0400 0ec0798fb404bdb4556e749b36c26709 174 Pfam PF00583 Acetyltransferase (GNAT) family 38 144 3.3E-18 T 12-10-2018 IPR000182 GNAT domain ALFP_0400 0ec0798fb404bdb4556e749b36c26709 174 Gene3D G3DSA:3.40.630.30 6 169 1.1E-46 T 12-10-2018 ALFP_0400 0ec0798fb404bdb4556e749b36c26709 174 SUPERFAMILY SSF55729 8 157 3.66E-34 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_2504 00e0673b3a09d55ec03d27befec9311f 228 Pfam PF00877 NlpC/P60 family 104 211 1.2E-28 T 12-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain ALFP_2504 00e0673b3a09d55ec03d27befec9311f 228 SUPERFAMILY SSF54001 89 212 2.71E-39 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily ALFP_2504 00e0673b3a09d55ec03d27befec9311f 228 Gene3D G3DSA:3.90.1720.10 20 208 5.1E-42 T 12-10-2018 ALFP_0238 3f0435df85fda154d0659a52fdddf556 227 Pfam PF11010 Protein of unknown function (DUF2848) 26 218 4.7E-77 T 12-10-2018 IPR021269 Protein of unknown function DUF2848 ALFP_1554 88ff704b0a99b7eb498d79e2b8a6141a 309 SUPERFAMILY SSF111369 46 184 3.79E-20 T 12-10-2018 ALFP_1554 88ff704b0a99b7eb498d79e2b8a6141a 309 Pfam PF13437 HlyD family secretion protein 158 243 3.1E-7 T 12-10-2018 ALFP_1554 88ff704b0a99b7eb498d79e2b8a6141a 309 Gene3D G3DSA:2.40.30.170 173 291 7.8E-23 T 12-10-2018 ALFP_1554 88ff704b0a99b7eb498d79e2b8a6141a 309 Pfam PF13533 Biotin-lipoyl like 51 98 3.7E-17 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain ALFP_1554 88ff704b0a99b7eb498d79e2b8a6141a 309 Gene3D G3DSA:2.40.50.100 49 116 2.6E-12 T 12-10-2018 ALFP_2099 0ab697cc3bef30a57ace57c58eef2c38 234 Pfam PF03741 Integral membrane protein TerC family 14 190 4.0E-45 T 12-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 ALFP_2099 0ab697cc3bef30a57ace57c58eef2c38 234 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 13 191 5.4E-72 T 12-10-2018 IPR022301 Integral membrane protein YjbE ALFP_3534 8e35a471f5d3b133012d5d6760229fa4 281 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 271 3.5E-14 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase ALFP_3534 8e35a471f5d3b133012d5d6760229fa4 281 SUPERFAMILY SSF56219 2 278 1.01E-41 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily ALFP_3050 1d161103b3b19b60fbfd9fa8062947a6 247 SUPERFAMILY SSF52540 1 184 3.24E-7 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3050 1d161103b3b19b60fbfd9fa8062947a6 247 Gene3D G3DSA:3.40.50.300 1 154 1.3E-5 T 12-10-2018 ALFP_1911 c574feb4ef78e8447343f6bc947ae9f3 405 Gene3D G3DSA:1.20.1250.20 208 400 7.0E-20 T 12-10-2018 ALFP_1911 c574feb4ef78e8447343f6bc947ae9f3 405 Gene3D G3DSA:1.20.1250.20 19 205 3.9E-13 T 12-10-2018 ALFP_1911 c574feb4ef78e8447343f6bc947ae9f3 405 Pfam PF07690 Major Facilitator Superfamily 44 352 8.5E-24 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_1911 c574feb4ef78e8447343f6bc947ae9f3 405 SUPERFAMILY SSF103473 20 397 1.12E-46 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_2715 6c62af0b26b6f11dd04519adcec75a68 900 SUPERFAMILY SSF53474 62 383 3.25E-25 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_2715 6c62af0b26b6f11dd04519adcec75a68 900 Pfam PF11339 Protein of unknown function (DUF3141) 33 604 4.5E-270 T 12-10-2018 IPR024501 Protein of unknown function DUF3141 ALFP_3603 66ec21c088891f0ceaaff2190741af50 441 TIGRFAM TIGR03144 cytochr_II_ccsB: cytochrome c-type biogenesis protein CcsB 150 439 8.8E-75 T 12-10-2018 IPR017562 Cytochrome c-type biogenesis protein CcsA GO:0017004 ALFP_3603 66ec21c088891f0ceaaff2190741af50 441 Pfam PF01578 Cytochrome C assembly protein 179 436 9.9E-47 T 12-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 ALFP_0503 3b54c83e79907e38936764f126ced8a2 182 SUPERFAMILY SSF46689 25 81 4.04E-6 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_0503 3b54c83e79907e38936764f126ced8a2 182 Gene3D G3DSA:1.10.357.10 1 182 4.2E-37 T 12-10-2018 ALFP_2386 d6e75effc447b6e1491c51ac3f1fb452 520 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 60 220 5.6E-25 T 12-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like ALFP_3276 cdf6a1c07cb70c92d6dc82278ef5de71 247 SMART SM00382 35 214 9.8E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3276 cdf6a1c07cb70c92d6dc82278ef5de71 247 SUPERFAMILY SSF52540 8 239 4.6E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3276 cdf6a1c07cb70c92d6dc82278ef5de71 247 Pfam PF00005 ABC transporter 27 164 1.1E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_3276 cdf6a1c07cb70c92d6dc82278ef5de71 247 Gene3D G3DSA:3.40.50.300 5 222 1.5E-59 T 12-10-2018 ALFP_1350 83e947ad94479aa6d40658dd14c675d1 138 SUPERFAMILY SSF55961 8 112 1.84E-8 T 12-10-2018 ALFP_1350 83e947ad94479aa6d40658dd14c675d1 138 Gene3D G3DSA:3.30.530.20 6 136 2.8E-11 T 12-10-2018 IPR023393 START-like domain superfamily ALFP_1897 edf76338a6921d6c4a0da71c7cc9cd8b 587 SUPERFAMILY SSF53474 332 585 4.16E-73 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1897 edf76338a6921d6c4a0da71c7cc9cd8b 587 Gene3D G3DSA:2.130.10.120 32 316 1.0E-5 T 12-10-2018 ALFP_1897 edf76338a6921d6c4a0da71c7cc9cd8b 587 SUPERFAMILY SSF82171 16 322 8.63E-14 T 12-10-2018 ALFP_1897 edf76338a6921d6c4a0da71c7cc9cd8b 587 Pfam PF00326 Prolyl oligopeptidase family 374 586 1.5E-48 T 12-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 ALFP_1897 edf76338a6921d6c4a0da71c7cc9cd8b 587 Gene3D G3DSA:3.40.50.1820 321 586 1.3E-77 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1012 f61b93d5553d4e8f3a8ad185d65f377a 484 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 265 470 1.1E-26 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_1012 f61b93d5553d4e8f3a8ad185d65f377a 484 SUPERFAMILY SSF161098 248 447 9.42E-18 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1012 f61b93d5553d4e8f3a8ad185d65f377a 484 Gene3D G3DSA:1.10.3720.10 237 469 8.5E-19 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2245 fe00d1510f839d6980cc4040c2fd60a6 338 Pfam PF10671 Toxin co-regulated pilus biosynthesis protein Q 243 321 1.5E-20 T 12-10-2018 IPR018927 Toxin co-regulated pilus biosynthesis protein Q, C-terminal ALFP_2245 fe00d1510f839d6980cc4040c2fd60a6 338 Pfam PF03524 Conjugal transfer protein 45 120 1.6E-10 T 12-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX ALFP_2245 fe00d1510f839d6980cc4040c2fd60a6 338 Gene3D G3DSA:2.60.40.2500 38 138 2.4E-7 T 12-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily ALFP_3287 552f4b4859e939994ea42d6985ff0989 411 Pfam PF01943 Polysaccharide biosynthesis protein 3 281 2.6E-25 T 12-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 ALFP_3287 552f4b4859e939994ea42d6985ff0989 411 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 331 410 3.9E-8 T 12-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain ALFP_1804 7d53bb9e26603552f40e0f12e16d71ca 191 Pfam PF00959 Phage lysozyme 62 169 5.8E-20 T 12-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 ALFP_1804 7d53bb9e26603552f40e0f12e16d71ca 191 Gene3D G3DSA:1.10.530.40 22 178 4.6E-47 T 12-10-2018 ALFP_1804 7d53bb9e26603552f40e0f12e16d71ca 191 SUPERFAMILY SSF53955 32 177 1.18E-44 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily ALFP_2164 484dffe1f1ce4551fb6b578a58796b16 434 Pfam PF00155 Aminotransferase class I and II 96 374 1.3E-18 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ALFP_2164 484dffe1f1ce4551fb6b578a58796b16 434 SUPERFAMILY SSF53383 70 425 1.11E-74 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_2164 484dffe1f1ce4551fb6b578a58796b16 434 Gene3D G3DSA:3.40.640.10 62 423 2.0E-105 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 ALFP_1595 5f8b6f55433e8d38d023874e145fdb4f 65 Pfam PF11127 Protein of unknown function (DUF2892) 1 61 3.5E-24 T 12-10-2018 IPR021309 Protein of unknown function DUF2892 ALFP_2912 2f9be43dc070b13fa320492a6ab43eb4 350 SUPERFAMILY SSF144052 135 340 3.14E-16 T 12-10-2018 ALFP_0529 419ff14b9a3f513ae1782c011b8e99ca 391 SUPERFAMILY SSF75304 13 385 8.37E-94 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_0529 419ff14b9a3f513ae1782c011b8e99ca 391 Pfam PF01425 Amidase 29 379 9.1E-62 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_0529 419ff14b9a3f513ae1782c011b8e99ca 391 Gene3D G3DSA:3.90.1300.10 3 388 6.1E-109 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ALFP_0716 2318aab448534b7493a8c07a62bf9b22 116 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 3 104 2.0E-14 T 12-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III ALFP_0193 a5c9634b4e39a01f4a03d34a9df6a35c 324 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 39 296 4.1E-32 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_0193 a5c9634b4e39a01f4a03d34a9df6a35c 324 Gene3D G3DSA:3.40.190.170 24 321 1.0E-95 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_1490 fb9d8f33f2b2126bf7c9e9b4aaa0a9ce 245 SUPERFAMILY SSF51735 7 231 1.02E-37 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily ALFP_1490 fb9d8f33f2b2126bf7c9e9b4aaa0a9ce 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 2.8E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1490 fb9d8f33f2b2126bf7c9e9b4aaa0a9ce 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 2.8E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1490 fb9d8f33f2b2126bf7c9e9b4aaa0a9ce 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 2.8E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1490 fb9d8f33f2b2126bf7c9e9b4aaa0a9ce 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 2.8E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1490 fb9d8f33f2b2126bf7c9e9b4aaa0a9ce 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 2.8E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_1490 fb9d8f33f2b2126bf7c9e9b4aaa0a9ce 245 Gene3D G3DSA:3.40.50.720 5 238 7.1E-47 T 12-10-2018 ALFP_1490 fb9d8f33f2b2126bf7c9e9b4aaa0a9ce 245 Pfam PF00106 short chain dehydrogenase 8 194 4.6E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR ALFP_3495 eb7392d206c2405ece62eb585dd21349 208 SUPERFAMILY SSF52499 4 202 6.28E-54 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_3495 eb7392d206c2405ece62eb585dd21349 208 Pfam PF00857 Isochorismatase family 14 165 4.4E-22 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 ALFP_3495 eb7392d206c2405ece62eb585dd21349 208 Gene3D G3DSA:3.40.50.850 1 208 1.9E-60 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 ALFP_1469 035c21b4356284b97e5c4a60bbe2cddc 496 Gene3D G3DSA:1.20.1250.20 40 221 2.7E-24 T 12-10-2018 ALFP_1469 035c21b4356284b97e5c4a60bbe2cddc 496 Pfam PF07690 Major Facilitator Superfamily 49 442 4.9E-32 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_1469 035c21b4356284b97e5c4a60bbe2cddc 496 SUPERFAMILY SSF103473 43 486 2.49E-38 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_1469 035c21b4356284b97e5c4a60bbe2cddc 496 Gene3D G3DSA:1.20.1250.20 292 493 5.8E-8 T 12-10-2018 ALFP_0886 3b6256f283266a47344344229e8a1cee 363 SUPERFAMILY SSF51004 50 339 1.11E-35 T 12-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily ALFP_0886 3b6256f283266a47344344229e8a1cee 363 Gene3D G3DSA:2.130.10.10 41 360 2.8E-83 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 ALFP_1204 ca2598b6be15fa3b5011a79bdaca26eb 410 SUPERFAMILY SSF117143 73 371 3.01E-71 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like ALFP_1204 ca2598b6be15fa3b5011a79bdaca26eb 410 Pfam PF00460 Flagella basal body rod protein 6 33 2.9E-8 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 ALFP_1204 ca2598b6be15fa3b5011a79bdaca26eb 410 Pfam PF07559 Flagellar basal body protein FlaE 173 291 2.8E-20 T 12-10-2018 IPR011491 Flagellar hook protein FlgE ALFP_1204 ca2598b6be15fa3b5011a79bdaca26eb 410 Gene3D G3DSA:2.60.98.20 139 292 1.3E-28 T 12-10-2018 IPR037058 Flagellar hook protein FlgE superfamily ALFP_1204 ca2598b6be15fa3b5011a79bdaca26eb 410 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 331 409 1.4E-21 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain ALFP_1204 ca2598b6be15fa3b5011a79bdaca26eb 410 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 392 1.8E-91 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G ALFP_1399 badc00eb4e089889b7f1eea527ca96a0 104 Gene3D G3DSA:3.30.70.2340 1 102 6.8E-36 T 12-10-2018 ALFP_1399 badc00eb4e089889b7f1eea527ca96a0 104 Pfam PF12112 Protein of unknown function (DUF3579) 6 92 1.0E-37 T 12-10-2018 IPR021969 Protein of unknown function DUF3579 ALFP_1748 3a769a9598ad299bf93673b001b111a4 165 Pfam PF04448 Protein of unknown function (DUF551) 85 155 1.7E-6 T 12-10-2018 IPR007539 Domain of unknown function DUF551 ALFP_0873 c77d786419a3b3fb9c185e9c8b3bf587 233 Gene3D G3DSA:3.40.50.300 6 231 1.3E-54 T 12-10-2018 ALFP_0873 c77d786419a3b3fb9c185e9c8b3bf587 233 SUPERFAMILY SSF52540 19 226 4.37E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0873 c77d786419a3b3fb9c185e9c8b3bf587 233 Pfam PF00005 ABC transporter 28 169 2.1E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_0873 c77d786419a3b3fb9c185e9c8b3bf587 233 SMART SM00382 27 218 1.5E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_0858 2a87404ebc6292c3367bd2c67fd0917a 173 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 28 159 2.9E-22 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_1486 003fb912c4ec95131fac2e8caaeffced 292 ProSitePatterns PS01335 Methylglyoxal synthase active site. 219 227 - T 12-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 ALFP_1486 003fb912c4ec95131fac2e8caaeffced 292 SUPERFAMILY SSF52335 13 141 7.1E-18 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily ALFP_1486 003fb912c4ec95131fac2e8caaeffced 292 Gene3D G3DSA:3.40.50.1380 155 290 3.5E-39 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily ALFP_1486 003fb912c4ec95131fac2e8caaeffced 292 SUPERFAMILY SSF52335 151 288 2.98E-29 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily ALFP_1486 003fb912c4ec95131fac2e8caaeffced 292 Gene3D G3DSA:3.40.50.1380 12 140 5.4E-9 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily ALFP_1793 07ed8974a86025ab7fd8cc335c9eae5a 291 SUPERFAMILY SSF47794 206 259 5.34E-8 T 12-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 ALFP_1793 07ed8974a86025ab7fd8cc335c9eae5a 291 Gene3D G3DSA:1.10.150.20 209 261 1.9E-7 T 12-10-2018 ALFP_3456 31bcd802030ad6084418aecbc20e81e6 240 SUPERFAMILY SSF54909 123 222 8.05E-12 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel ALFP_0960 7e4659dc1f864a078db6460929b70918 300 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 14 281 1.6E-67 T 12-10-2018 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 ALFP_0434 44527ec95f45f027d9591ad4d20a124e 340 Pfam PF01594 AI-2E family transporter 2 330 1.6E-40 T 12-10-2018 IPR002549 Transmembrane protein TqsA-like ALFP_2051 45a246e2831759cbb790e1981c3f01fe 165 SUPERFAMILY SSF55729 2 139 8.15E-21 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase ALFP_2051 45a246e2831759cbb790e1981c3f01fe 165 Gene3D G3DSA:3.40.630.30 1 164 7.7E-17 T 12-10-2018 ALFP_2051 45a246e2831759cbb790e1981c3f01fe 165 Pfam PF00583 Acetyltransferase (GNAT) family 25 133 7.6E-9 T 12-10-2018 IPR000182 GNAT domain ALFP_2003 56cdb8fc37ccd887426b4c408f32cc30 253 SUPERFAMILY SSF53335 17 232 2.47E-33 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_2003 56cdb8fc37ccd887426b4c408f32cc30 253 Gene3D G3DSA:3.40.50.150 11 253 1.9E-34 T 12-10-2018 ALFP_3000 27e0f9edfe22efebe31f1bb43d3cfec0 253 SUPERFAMILY SSF53474 8 238 1.24E-33 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_3000 27e0f9edfe22efebe31f1bb43d3cfec0 253 Pfam PF00326 Prolyl oligopeptidase family 42 240 4.7E-11 T 12-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 ALFP_3000 27e0f9edfe22efebe31f1bb43d3cfec0 253 Gene3D G3DSA:3.40.50.1820 29 243 3.9E-45 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold ALFP_1264 b53e3356e9c6dfb17a61f0be25a06034 322 SUPERFAMILY SSF53850 110 280 6.51E-9 T 12-10-2018 ALFP_1264 b53e3356e9c6dfb17a61f0be25a06034 322 Gene3D G3DSA:3.40.190.10 124 246 8.2E-92 T 12-10-2018 ALFP_1264 b53e3356e9c6dfb17a61f0be25a06034 322 PIRSF PIRSF017082 3 320 2.3E-70 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_1264 b53e3356e9c6dfb17a61f0be25a06034 322 Gene3D G3DSA:3.40.190.150 26 311 8.2E-92 T 12-10-2018 ALFP_1264 b53e3356e9c6dfb17a61f0be25a06034 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 317 1.8E-58 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 ALFP_0649 757867cc93850c66ee95f38ab7af5518 64 Gene3D G3DSA:3.30.70.100 2 61 1.3E-18 T 12-10-2018 ALFP_0649 757867cc93850c66ee95f38ab7af5518 64 Pfam PF00403 Heavy-metal-associated domain 3 59 3.5E-12 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 ALFP_0649 757867cc93850c66ee95f38ab7af5518 64 SUPERFAMILY SSF55008 2 62 5.76E-14 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 ALFP_3408 77c88c448ec118a3ac8dab66954cfe49 356 Pfam PF06812 ImpA, N-terminal, type VI secretion system 18 136 1.3E-25 T 12-10-2018 IPR010657 ImpA, N-terminal ALFP_3408 77c88c448ec118a3ac8dab66954cfe49 356 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 19 337 3.3E-48 T 12-10-2018 IPR017740 Type VI secretion system-associated, ImpA ALFP_3590 6a50ecc5e055d4b6d477ad6748099ab8 305 SUPERFAMILY SSF56529 87 304 8.5E-73 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 ALFP_3590 6a50ecc5e055d4b6d477ad6748099ab8 305 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 92 304 2.4E-69 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 ALFP_3590 6a50ecc5e055d4b6d477ad6748099ab8 305 Gene3D G3DSA:3.90.850.10 86 305 1.6E-81 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 ALFP_2938 745f3b45eef413d49965e8a7fdb99a6a 559 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 14 515 2.2E-117 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_2209 861c317c0e8db43ce962600dacc91846 433 Pfam PF04191 Phospholipid methyltransferase 298 367 1.8E-9 T 12-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 ALFP_2209 861c317c0e8db43ce962600dacc91846 433 Gene3D G3DSA:1.20.120.1630 189 381 8.0E-24 T 12-10-2018 ALFP_1892 9eb6610d54975b61f7bbcd60dfd9e10a 309 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 293 1.9E-50 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_3418 163a1afcb0790f361f8bd2e502d4ab55 191 Pfam PF02417 Chromate transporter 14 172 9.4E-28 T 12-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 ALFP_1810 404bef37fe546a6c08153acfa55c52f9 436 Pfam PF08857 Putative ParB-like nuclease 74 302 1.7E-51 T 12-10-2018 IPR014956 Putative ParB-like nuclease ALFP_1810 404bef37fe546a6c08153acfa55c52f9 436 SUPERFAMILY SSF110849 70 309 1.83E-47 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily ALFP_1810 404bef37fe546a6c08153acfa55c52f9 436 Gene3D G3DSA:3.90.1530.10 146 260 3.9E-13 T 12-10-2018 ALFP_1531 70f161d17770a1f57f764269b9c4e3cd 325 PIRSF PIRSF034367 1 325 6.9E-197 T 12-10-2018 IPR015004 Protein of unknown function DUF1852 ALFP_1531 70f161d17770a1f57f764269b9c4e3cd 325 Pfam PF08908 Domain of unknown function (DUF1852) 1 321 3.5E-187 T 12-10-2018 IPR015004 Protein of unknown function DUF1852 ALFP_1006 3745ddfa7b4b0c783759475b4c767f1d 126 Pfam PF04241 Protein of unknown function (DUF423) 20 106 3.2E-27 T 12-10-2018 IPR006696 Protein of unknown function DUF423 ALFP_2076 dd53cc7a68460492579e1f957efeb6c4 125 Pfam PF09842 Predicted membrane protein (DUF2069) 2 100 2.5E-30 T 12-10-2018 IPR018643 Protein of unknown function DUF2069, membrane ALFP_3025 5846982a6d78be04fac012c9840e0314 429 Pfam PF02040 Arsenical pump membrane protein 5 423 4.4E-153 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 ALFP_3025 5846982a6d78be04fac012c9840e0314 429 PRINTS PR00758 Arsenical pump membrane protein signature 101 125 3.8E-113 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 ALFP_3025 5846982a6d78be04fac012c9840e0314 429 PRINTS PR00758 Arsenical pump membrane protein signature 177 200 3.8E-113 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 ALFP_3025 5846982a6d78be04fac012c9840e0314 429 PRINTS PR00758 Arsenical pump membrane protein signature 278 302 3.8E-113 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 ALFP_3025 5846982a6d78be04fac012c9840e0314 429 PRINTS PR00758 Arsenical pump membrane protein signature 323 345 3.8E-113 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 ALFP_3025 5846982a6d78be04fac012c9840e0314 429 PRINTS PR00758 Arsenical pump membrane protein signature 397 421 3.8E-113 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 ALFP_3025 5846982a6d78be04fac012c9840e0314 429 PRINTS PR00758 Arsenical pump membrane protein signature 217 242 3.8E-113 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 ALFP_3025 5846982a6d78be04fac012c9840e0314 429 PRINTS PR00758 Arsenical pump membrane protein signature 364 389 3.8E-113 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 ALFP_3025 5846982a6d78be04fac012c9840e0314 429 PRINTS PR00758 Arsenical pump membrane protein signature 144 168 3.8E-113 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 ALFP_3025 5846982a6d78be04fac012c9840e0314 429 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 4 426 8.6E-206 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 ALFP_3459 bf18d3378e1a142cd0a62fe0d960fa7b 172 Pfam PF00866 Ring hydroxylating beta subunit 27 159 1.3E-27 T 12-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 ALFP_3459 bf18d3378e1a142cd0a62fe0d960fa7b 172 Gene3D G3DSA:3.10.450.50 10 169 5.1E-43 T 12-10-2018 ALFP_3459 bf18d3378e1a142cd0a62fe0d960fa7b 172 SUPERFAMILY SSF54427 16 161 8.77E-39 T 12-10-2018 IPR032710 NTF2-like domain superfamily ALFP_1144 e37662a18228d342177a5b1f20af08fc 254 Gene3D G3DSA:3.40.50.620 71 212 1.8E-5 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ALFP_1144 e37662a18228d342177a5b1f20af08fc 254 Pfam PF02698 DUF218 domain 79 244 2.0E-33 T 12-10-2018 IPR003848 Domain of unknown function DUF218 ALFP_3198 c629a6e51bb831bbc144a50ab1f4046d 312 Gene3D G3DSA:1.20.58.340 235 311 4.3E-16 T 12-10-2018 ALFP_3198 c629a6e51bb831bbc144a50ab1f4046d 312 Pfam PF01544 CorA-like Mg2+ transporter protein 54 306 1.7E-43 T 12-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 ALFP_3198 c629a6e51bb831bbc144a50ab1f4046d 312 SUPERFAMILY SSF144083 246 308 4.32E-12 T 12-10-2018 ALFP_0864 dd595866581410f317c63e93c2bb5d20 129 Gene3D G3DSA:1.10.10.10 4 128 6.8E-42 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_0864 dd595866581410f317c63e93c2bb5d20 129 SUPERFAMILY SSF46785 18 124 9.73E-35 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0864 dd595866581410f317c63e93c2bb5d20 129 Pfam PF01638 HxlR-like helix-turn-helix 31 115 2.8E-27 T 12-10-2018 IPR002577 Helix-turn-helix, HxlR type ALFP_3147 b77fd52dd9e64978106349fd39bef608 223 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ALFP_3147 b77fd52dd9e64978106349fd39bef608 223 SUPERFAMILY SSF52540 1 217 1.47E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3147 b77fd52dd9e64978106349fd39bef608 223 Gene3D G3DSA:3.40.50.300 1 221 2.8E-62 T 12-10-2018 ALFP_3147 b77fd52dd9e64978106349fd39bef608 223 SMART SM00382 27 214 7.3E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain ALFP_3147 b77fd52dd9e64978106349fd39bef608 223 Pfam PF00005 ABC transporter 18 166 9.3E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ALFP_2316 df8edc2506b52b7a0d53efba20bed5a2 110 Pfam PF06305 Lipopolysaccharide assembly protein A domain 22 87 8.2E-19 T 12-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 ALFP_2467 d1cf557003568ef9383fa1e112b1b1a1 473 TIGRFAM TIGR00797 matE: MATE efflux family protein 22 411 7.6E-62 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 ALFP_2467 d1cf557003568ef9383fa1e112b1b1a1 473 Pfam PF01554 MatE 247 407 1.0E-19 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 ALFP_2467 d1cf557003568ef9383fa1e112b1b1a1 473 Pfam PF01554 MatE 31 182 2.5E-20 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 ALFP_0659 3c2959e8c1cb21d93c30a5d992a5c5c0 134 Pfam PF01152 Bacterial-like globin 6 109 3.3E-5 T 12-10-2018 IPR001486 Truncated hemoglobin GO:0019825 ALFP_0659 3c2959e8c1cb21d93c30a5d992a5c5c0 134 SUPERFAMILY SSF46458 5 115 1.6E-23 T 12-10-2018 IPR009050 Globin-like superfamily ALFP_0659 3c2959e8c1cb21d93c30a5d992a5c5c0 134 Gene3D G3DSA:1.10.490.10 4 120 1.5E-36 T 12-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 ALFP_2148 8830ed01196ada8363214b76e0c420c6 195 SUPERFAMILY SSF53335 4 162 2.67E-25 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_2148 8830ed01196ada8363214b76e0c420c6 195 Pfam PF13649 Methyltransferase domain 23 114 6.1E-17 T 12-10-2018 ALFP_2148 8830ed01196ada8363214b76e0c420c6 195 Gene3D G3DSA:3.40.50.150 1 183 5.6E-26 T 12-10-2018 ALFP_2427 4c05a224358a53eeba5867a234e0890c 56 Pfam PF09998 Uncharacterized protein conserved in bacteria (DUF2239) 1 45 2.6E-14 T 12-10-2018 IPR018715 Protein of unknown function DUF2239 ALFP_1612 e92efe2e9a1758f24bedba708426af58 280 Pfam PF02535 ZIP Zinc transporter 136 275 1.6E-16 T 12-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 ALFP_1934 371bb1b1d50a68c2aa30e71a48d72dc7 189 Gene3D G3DSA:1.20.950.20 6 88 2.7E-6 T 12-10-2018 ALFP_1934 371bb1b1d50a68c2aa30e71a48d72dc7 189 Pfam PF01292 Prokaryotic cytochrome b561 12 181 5.5E-31 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 ALFP_1934 371bb1b1d50a68c2aa30e71a48d72dc7 189 SUPERFAMILY SSF81342 10 181 7.38E-38 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 ALFP_1652 08842a9069e5fd85125c90765f944e6b 139 Gene3D G3DSA:2.170.150.70 8 128 4.4E-16 T 12-10-2018 ALFP_1652 08842a9069e5fd85125c90765f944e6b 139 SUPERFAMILY SSF51316 7 131 1.88E-34 T 12-10-2018 IPR011057 Mss4-like superfamily ALFP_1652 08842a9069e5fd85125c90765f944e6b 139 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 30 114 3.6E-13 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 ALFP_2171 8a6436dbd231a40d3c4831f7b2e1ecb9 222 Gene3D G3DSA:1.10.3720.10 6 215 1.6E-43 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_2171 8a6436dbd231a40d3c4831f7b2e1ecb9 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 11 108 1.3E-28 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 ALFP_2171 8a6436dbd231a40d3c4831f7b2e1ecb9 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 213 1.7E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_2171 8a6436dbd231a40d3c4831f7b2e1ecb9 222 SUPERFAMILY SSF161098 13 205 4.45E-39 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_0933 72c0d7c32142842f203bbecc70ef557c 91 SUPERFAMILY SSF88659 16 70 2.4E-14 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like ALFP_0933 72c0d7c32142842f203bbecc70ef557c 91 Pfam PF08281 Sigma-70, region 4 20 69 1.2E-15 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ALFP_0933 72c0d7c32142842f203bbecc70ef557c 91 Gene3D G3DSA:1.10.10.10 14 72 3.4E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1840 2967c8c7cfa867646fccde36d25fd7ab 271 Pfam PF01618 MotA/TolQ/ExbB proton channel family 102 221 2.4E-19 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel ALFP_1840 2967c8c7cfa867646fccde36d25fd7ab 271 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 187 204 - T 12-10-2018 IPR000540 Flagellar motor protein MotA, conserved site ALFP_0353 89c722ae2e344d792b7c5af201b5de96 162 SUPERFAMILY SSF46626 39 123 6.02E-9 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_0353 89c722ae2e344d792b7c5af201b5de96 162 Gene3D G3DSA:1.10.760.10 34 144 2.3E-9 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 ALFP_3382 22c2a43300076f128046954d9e04a821 373 SUPERFAMILY SSF53756 1 371 3.71E-139 T 12-10-2018 ALFP_3382 22c2a43300076f128046954d9e04a821 373 Gene3D G3DSA:3.40.50.2000 2 366 6.1E-149 T 12-10-2018 ALFP_3382 22c2a43300076f128046954d9e04a821 373 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 21 369 1.6E-124 T 12-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 ALFP_3382 22c2a43300076f128046954d9e04a821 373 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 1 370 1.3E-155 T 12-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 ALFP_3382 22c2a43300076f128046954d9e04a821 373 Gene3D G3DSA:3.40.50.2000 187 355 6.1E-149 T 12-10-2018 ALFP_2084 77e9717a2cd034257c0c906d66b4f795 281 Gene3D G3DSA:1.20.81.30 102 216 1.4E-7 T 12-10-2018 ALFP_2084 77e9717a2cd034257c0c906d66b4f795 281 Pfam PF00482 Type II secretion system (T2SS), protein F 113 238 2.6E-12 T 12-10-2018 IPR018076 Type II secretion system F domain ALFP_0425 68fece2d62658d0665e695067844343e 260 Pfam PF01925 Sulfite exporter TauE/SafE 5 253 2.2E-41 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 ALFP_1014 8c37f639bf2f50ca91d9f3096d5a6555 158 Pfam PF06676 Protein of unknown function (DUF1178) 4 150 2.6E-48 T 12-10-2018 IPR009562 Protein of unknown function DUF1178 ALFP_1014 8c37f639bf2f50ca91d9f3096d5a6555 158 PIRSF PIRSF032131 3 156 1.8E-39 T 12-10-2018 IPR009562 Protein of unknown function DUF1178 ALFP_1235 758dc3302a75a71a5f6369dc318b6b54 462 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 10 105 8.3E-17 T 12-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 ALFP_1235 758dc3302a75a71a5f6369dc318b6b54 462 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 222 442 2.1E-47 T 12-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 ALFP_0450 906b80631fcc7f62ad7485436bda19a0 375 Pfam PF13776 Domain of unknown function (DUF4172) 6 87 1.3E-30 T 12-10-2018 IPR025230 Domain of unknown function DUF4172 ALFP_0450 906b80631fcc7f62ad7485436bda19a0 375 Gene3D G3DSA:1.10.3290.10 40 296 2.1E-43 T 12-10-2018 IPR036597 Fido-like domain superfamily ALFP_0450 906b80631fcc7f62ad7485436bda19a0 375 Pfam PF02661 Fic/DOC family 116 228 1.9E-18 T 12-10-2018 IPR003812 Fido domain ALFP_0450 906b80631fcc7f62ad7485436bda19a0 375 SUPERFAMILY SSF140931 100 298 1.83E-37 T 12-10-2018 IPR036597 Fido-like domain superfamily ALFP_3338 b0f6986ea10c9f823f89cc2363548832 240 Gene3D G3DSA:1.10.3720.10 34 227 2.0E-26 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_3338 b0f6986ea10c9f823f89cc2363548832 240 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 61 229 2.9E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 ALFP_3338 b0f6986ea10c9f823f89cc2363548832 240 SUPERFAMILY SSF161098 37 221 3.79E-26 T 12-10-2018 IPR035906 MetI-like superfamily ALFP_1689 6a5c1ba445a8c1f787ef73a561836883 79 Pfam PF03891 Domain of unknown function (DUF333) 27 73 1.1E-22 T 12-10-2018 IPR005590 Protein of unknown function DUF333 ALFP_1775 24e5b89521655450ef0ed9ed8c7a8173 512 Pfam PF07693 KAP family P-loop domain 54 326 2.0E-31 T 12-10-2018 IPR011646 KAP family P-loop domain ALFP_1775 24e5b89521655450ef0ed9ed8c7a8173 512 SUPERFAMILY SSF52540 45 279 3.92E-9 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_0820 dd57c7c5f0cfbf8b6e8f6e9fe46072e7 775 Pfam PF04453 Organic solvent tolerance protein 275 679 1.5E-74 T 12-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 ALFP_0820 dd57c7c5f0cfbf8b6e8f6e9fe46072e7 775 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 1 742 18.869 T 12-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 ALFP_1087 5a7aee3a974e037bbefbfdd76330472d 554 Pfam PF02690 Na+/Pi-cotransporter 163 230 5.9E-11 T 12-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 ALFP_1087 5a7aee3a974e037bbefbfdd76330472d 554 Pfam PF02690 Na+/Pi-cotransporter 16 148 1.9E-34 T 12-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 ALFP_1087 5a7aee3a974e037bbefbfdd76330472d 554 SUPERFAMILY SSF109755 325 534 5.97E-18 T 12-10-2018 ALFP_3239 5130e14514e9a9a2bed8323eb3e6c22c 291 Pfam PF03668 P-loop ATPase protein family 3 282 4.0E-83 T 12-10-2018 IPR005337 RapZ-like family GO:0005524 ALFP_3239 5130e14514e9a9a2bed8323eb3e6c22c 291 Gene3D G3DSA:3.40.50.300 1 171 4.2E-7 T 12-10-2018 ALFP_3239 5130e14514e9a9a2bed8323eb3e6c22c 291 SUPERFAMILY SSF52540 3 159 8.84E-12 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3239 5130e14514e9a9a2bed8323eb3e6c22c 291 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 2 286 38.945 T 12-10-2018 IPR005337 RapZ-like family GO:0005524 ALFP_3239 5130e14514e9a9a2bed8323eb3e6c22c 291 PIRSF PIRSF005052 2 287 1.1E-104 T 12-10-2018 IPR005337 RapZ-like family GO:0005524 ALFP_0466 1f87d42efbcf1959d864620087f6dc50 293 SUPERFAMILY SSF54593 10 153 1.38E-25 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_0466 1f87d42efbcf1959d864620087f6dc50 293 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 131 150 - T 12-10-2018 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 ALFP_0466 1f87d42efbcf1959d864620087f6dc50 293 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 13 151 1.7E-13 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain ALFP_0466 1f87d42efbcf1959d864620087f6dc50 293 Gene3D G3DSA:3.10.180.10 10 188 1.7E-27 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ALFP_1714 b7be21a9c32a74d7624d12627d294701 570 Pfam PF04542 Sigma-70 region 2 36 103 2.2E-9 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_1714 b7be21a9c32a74d7624d12627d294701 570 Pfam PF10099 Anti-sigma-K factor rskA 363 545 1.7E-14 T 12-10-2018 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 ALFP_1714 b7be21a9c32a74d7624d12627d294701 570 Gene3D G3DSA:1.10.1740.10 18 100 3.1E-16 T 12-10-2018 ALFP_1714 b7be21a9c32a74d7624d12627d294701 570 SUPERFAMILY SSF88946 21 103 6.67E-12 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 ALFP_1513 89609ae32448f359ef185a6be9823600 107 SUPERFAMILY SSF46689 4 98 3.94E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_1513 89609ae32448f359ef185a6be9823600 107 Gene3D G3DSA:1.10.10.10 1 66 1.1E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily ALFP_1513 89609ae32448f359ef185a6be9823600 107 Pfam PF01527 Transposase 1 86 3.4E-9 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 ALFP_3354 85484f7c1b4aea97d5efcae1d03c5d2d 362 SUPERFAMILY SSF52151 36 334 1.91E-10 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase ALFP_1292 01412b1cdbc646b28f425e1c9f1fcb56 98 Pfam PF12365 Protein of unknown function (DUF3649) 64 87 6.2E-9 T 12-10-2018 IPR022109 Protein of unknown function DUF3649 ALFP_2684 8566cce85c4865ef1486a56271c3ba92 561 Pfam PF13687 Domain of unknown function (DUF4153) 132 362 5.5E-16 T 12-10-2018 IPR025291 Protein of unknown function DUF4153 ALFP_2809 19584e9c5917917346209954aad34944 79 Pfam PF02954 Bacterial regulatory protein, Fis family 38 74 3.0E-15 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_2809 19584e9c5917917346209954aad34944 79 Gene3D G3DSA:1.10.10.60 1 77 1.8E-23 T 12-10-2018 ALFP_2809 19584e9c5917917346209954aad34944 79 SUPERFAMILY SSF46689 7 77 4.66E-19 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2809 19584e9c5917917346209954aad34944 79 PIRSF PIRSF002097 1 78 6.4E-26 T 12-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 ALFP_2809 19584e9c5917917346209954aad34944 79 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 58 78 1.1E-13 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_2809 19584e9c5917917346209954aad34944 79 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 41 58 1.1E-13 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 ALFP_1092 3906c439a17ef86ce3c2406479f80a9d 279 Pfam PF01435 Peptidase family M48 67 275 5.1E-39 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 ALFP_1092 3906c439a17ef86ce3c2406479f80a9d 279 Gene3D G3DSA:3.30.2010.10 59 150 2.0E-29 T 12-10-2018 ALFP_2935 52a2397103c9667d94741fb5cd169597 307 Pfam PF00892 EamA-like transporter family 165 299 8.2E-11 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_2935 52a2397103c9667d94741fb5cd169597 307 Pfam PF00892 EamA-like transporter family 14 146 1.5E-8 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 ALFP_2935 52a2397103c9667d94741fb5cd169597 307 SUPERFAMILY SSF103481 49 146 1.7E-8 T 12-10-2018 ALFP_2935 52a2397103c9667d94741fb5cd169597 307 SUPERFAMILY SSF103481 207 303 5.1E-10 T 12-10-2018 ALFP_2636 6510917e2cf05b5bb4abcc7bad1653be 307 Pfam PF00482 Type II secretion system (T2SS), protein F 140 266 3.3E-15 T 12-10-2018 IPR018076 Type II secretion system F domain ALFP_0388 42f793bfdfaea7fd1dc02188e0a28e6e 565 Gene3D G3DSA:1.20.1730.10 31 472 4.6E-48 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily ALFP_0388 42f793bfdfaea7fd1dc02188e0a28e6e 565 Pfam PF00474 Sodium:solute symporter family 44 424 2.7E-25 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 ALFP_0189 172fc094a2d364318999a852587766d0 305 Pfam PF02470 MlaD protein 45 115 2.8E-13 T 12-10-2018 IPR003399 Mce/MlaD ALFP_1148 ebec2b772703b456deb26b5843d8b009 178 Pfam PF13671 AAA domain 22 161 9.1E-26 T 12-10-2018 ALFP_1148 ebec2b772703b456deb26b5843d8b009 178 Gene3D G3DSA:3.40.50.300 4 177 3.2E-23 T 12-10-2018 ALFP_1148 ebec2b772703b456deb26b5843d8b009 178 SUPERFAMILY SSF52540 20 156 1.03E-15 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_1801 e7413912dbe91df0a056d07e7896509e 267 SUPERFAMILY SSF49899 89 232 1.37E-6 T 12-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily ALFP_1253 e8baa5a7e1841ad613a08fdff9bf1ce6 421 Pfam PF04286 Protein of unknown function (DUF445) 43 417 1.6E-99 T 12-10-2018 IPR007383 Protein of unknown function DUF445 ALFP_0495 ba03913b0804bca5b1770c574bb6705c 555 Pfam PF02652 L-lactate permease 17 546 3.5E-218 T 12-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 ALFP_0495 ba03913b0804bca5b1770c574bb6705c 555 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 7 548 1.8E-225 T 12-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 ALFP_0371 57ec3ec99ba6a9e0a2e5f16bd4afb3e2 258 Gene3D G3DSA:3.40.50.150 4 257 6.9E-9 T 12-10-2018 ALFP_0371 57ec3ec99ba6a9e0a2e5f16bd4afb3e2 258 SUPERFAMILY SSF53335 15 199 4.75E-13 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ALFP_0330 561b185277ca24850c27d25265118817 221 Pfam PF01177 Asp/Glu/Hydantoin racemase 54 211 7.5E-10 T 12-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 ALFP_0330 561b185277ca24850c27d25265118817 221 Gene3D G3DSA:3.40.50.12500 6 221 2.0E-54 T 12-10-2018 ALFP_1561 5f9576b737ebe633bb82445c6b12e0c2 181 Pfam PF01292 Prokaryotic cytochrome b561 9 176 3.6E-13 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 ALFP_1561 5f9576b737ebe633bb82445c6b12e0c2 181 SUPERFAMILY SSF81342 8 176 7.85E-14 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 ALFP_2183 36d6ec162e64198484e5f8a5f75ee7eb 677 Pfam PF13598 Domain of unknown function (DUF4139) 221 500 7.0E-13 T 12-10-2018 IPR037291 Domain of unknown function DUF4139 ALFP_0173 5ddc30395b7b16437a31104beac9178e 473 Pfam PF11067 Protein of unknown function (DUF2868) 159 453 1.5E-65 T 12-10-2018 IPR021296 Protein of unknown function DUF2868 ALFP_3502 7bc2e04c7e08f8c2f6165f9514c79ceb 434 Pfam PF13657 HipA N-terminal domain 40 138 1.3E-6 T 12-10-2018 IPR017508 HipA, N-terminal subdomain 1 ALFP_3502 7bc2e04c7e08f8c2f6165f9514c79ceb 434 Pfam PF07804 HipA-like C-terminal domain 187 401 3.7E-38 T 12-10-2018 IPR012893 HipA-like, C-terminal ALFP_2638 144200fabec0e95999d9d4bda3a3018b 407 Gene3D G3DSA:3.40.50.300 123 385 1.5E-28 T 12-10-2018 ALFP_2638 144200fabec0e95999d9d4bda3a3018b 407 SUPERFAMILY SSF52540 129 385 3.77E-18 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase ALFP_3612 5d52aef1c8c5e0b32ea24a4dbb63e0f0 361 SUPERFAMILY SSF51679 11 360 1.1E-80 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 ALFP_3612 5d52aef1c8c5e0b32ea24a4dbb63e0f0 361 Gene3D G3DSA:3.20.20.30 10 359 8.5E-78 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 ALFP_3612 5d52aef1c8c5e0b32ea24a4dbb63e0f0 361 Pfam PF00296 Luciferase-like monooxygenase 14 331 1.1E-68 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ALFP_1106 b2de62375beebfa23c8c6446a1f53c81 330 SUPERFAMILY SSF53659 6 328 3.31E-102 T 12-10-2018 ALFP_1106 b2de62375beebfa23c8c6446a1f53c81 330 Gene3D G3DSA:3.40.718.10 1 329 3.7E-122 T 12-10-2018 ALFP_1106 b2de62375beebfa23c8c6446a1f53c81 330 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 8 325 8.6E-110 T 12-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 ALFP_1106 b2de62375beebfa23c8c6446a1f53c81 330 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 35 322 3.9E-103 T 12-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 ALFP_3208 5bbc11d563e5f78e9bf8539db2cb3c6b 280 SUPERFAMILY SSF47240 5 267 1.39E-42 T 12-10-2018 IPR009078 Ferritin-like superfamily ALFP_3208 5bbc11d563e5f78e9bf8539db2cb3c6b 280 Gene3D G3DSA:1.10.620.20 1 218 7.5E-13 T 12-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 ALFP_0444 9ad5d6ec447bb72bf57231c890da0ee8 528 Pfam PF03432 Relaxase/Mobilisation nuclease domain 12 250 3.2E-49 T 12-10-2018 IPR005094 Endonuclease relaxase, MobA/VirD2 ALFP_1870 a48722a2feedde40e556bfa29c836ac0 203 Pfam PF01725 Ham1 family 8 198 6.1E-53 T 12-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 ALFP_1870 a48722a2feedde40e556bfa29c836ac0 203 Hamap MF_01405 dITP/XTP pyrophosphatase. 6 202 45.625 T 12-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 ALFP_1870 a48722a2feedde40e556bfa29c836ac0 203 Gene3D G3DSA:3.90.950.10 1 203 1.0E-69 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like ALFP_1870 a48722a2feedde40e556bfa29c836ac0 203 SUPERFAMILY SSF52972 5 200 1.23E-65 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like ALFP_1870 a48722a2feedde40e556bfa29c836ac0 203 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 8 198 1.3E-49 T 12-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 ALFP_2974 a17a9a407554fc14188c540c2e686fd3 330 Gene3D G3DSA:3.40.190.10 86 146 3.5E-5 T 12-10-2018 ALFP_2974 a17a9a407554fc14188c540c2e686fd3 330 SUPERFAMILY SSF53850 17 319 3.69E-31 T 12-10-2018 ALFP_2138 076fa36c527964775240df2ab8363a70 611 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 1 611 31.836 T 12-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup ALFP_2138 076fa36c527964775240df2ab8363a70 611 Pfam PF02705 K+ potassium transporter 2 529 9.7E-200 T 12-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 ALFP_2404 e49e3736056128547decf041390d55ad 86 Gene3D G3DSA:1.10.10.60 1 76 3.7E-17 T 12-10-2018 ALFP_2404 e49e3736056128547decf041390d55ad 86 SMART SM00342 1 68 6.4E-4 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_2404 e49e3736056128547decf041390d55ad 86 SUPERFAMILY SSF46689 20 74 3.32E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 ALFP_2404 e49e3736056128547decf041390d55ad 86 Pfam PF12833 Helix-turn-helix domain 2 70 7.3E-13 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ALFP_3369 1ba4c4cd027ba9c2d3b56c6463b4362f 107 SUPERFAMILY SSF89447 22 78 1.78E-6 T 12-10-2018 IPR037914 SpoVT-AbrB domain superfamily ALFP_3369 1ba4c4cd027ba9c2d3b56c6463b4362f 107 Gene3D G3DSA:2.10.260.10 20 103 3.7E-19 T 12-10-2018 ALFP_3419 403824e1c1d6f82e0b69c69a04b7a2e8 176 Pfam PF02417 Chromate transporter 6 168 1.8E-36 T 12-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 ALFP_2632 3809e66563c6a549d842eca0ae98016b 690 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 18 64 5.3E-7 T 12-10-2018 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal ALFP_2054 51681139ecfe67dbccd9831ba7f41bda 128 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 117 1.4E-22 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 ALFP_2054 51681139ecfe67dbccd9831ba7f41bda 128 TIGRFAM TIGR00494 crcB: protein CrcB 6 118 1.3E-28 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 ALFP_2054 51681139ecfe67dbccd9831ba7f41bda 128 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 122 17.93 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 ALFP_2060 5977b0450059e813cd29771ad192289f 557 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 15 515 1.8E-116 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_1360 827c98033d39839a71cbb395fd71def2 172 Pfam PF09335 SNARE associated Golgi protein 43 166 1.8E-12 T 12-10-2018 IPR032816 SNARE associated Golgi protein ALFP_0505 59c62261bfc1c1aa9576ea5f2eb8dcb9 493 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 438 4.2E-137 T 12-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane ALFP_1077 a91bd295225e3a1865433928e9a35e1c 137 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 15 100 2.0E-35 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 ALFP_1077 a91bd295225e3a1865433928e9a35e1c 137 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 11 113 22.357 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 ALFP_1077 a91bd295225e3a1865433928e9a35e1c 137 Gene3D G3DSA:3.30.300.20 8 107 2.7E-25 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta ALFP_1077 a91bd295225e3a1865433928e9a35e1c 137 Pfam PF02033 Ribosome-binding factor A 12 113 2.8E-24 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 ALFP_1077 a91bd295225e3a1865433928e9a35e1c 137 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 12 118 8.1E-21 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 ALFP_1077 a91bd295225e3a1865433928e9a35e1c 137 SUPERFAMILY SSF89919 9 116 8.11E-27 T 12-10-2018 IPR023799 Ribosome-binding factor A domain superfamily ALFP_1159 9cf58acc590255c4a90db63d1160c356 507 Pfam PF02690 Na+/Pi-cotransporter 1 135 1.6E-34 T 12-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 ALFP_1159 9cf58acc590255c4a90db63d1160c356 507 Pfam PF02690 Na+/Pi-cotransporter 156 235 3.1E-11 T 12-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 ALFP_3698 0d5a2e4fd426437843c245c42a26edb2 282 Pfam PF02666 Phosphatidylserine decarboxylase 63 279 2.9E-60 T 12-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 ALFP_3698 0d5a2e4fd426437843c245c42a26edb2 282 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 49 280 2.0E-72 T 12-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 ALFP_3698 0d5a2e4fd426437843c245c42a26edb2 282 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 10 282 43.73 T 12-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 ALFP_1618 6833bb1593941da11dad01207f8c7a3a 476 Gene3D G3DSA:2.60.120.380 156 266 2.6E-8 T 12-10-2018 ALFP_1618 6833bb1593941da11dad01207f8c7a3a 476 Gene3D G3DSA:2.60.120.380 386 474 3.4E-8 T 12-10-2018 ALFP_2771 da33df29885d2a7d9bf279030ee7497c 248 Pfam PF01203 Type II secretion system (T2SS), protein N 40 238 4.6E-15 T 12-10-2018 IPR022792 Type II secretion system, protein N ALFP_0401 200042fc6fdab6e0d26e8e22133dd2da 101 Pfam PF11604 Copper binding periplasmic protein CusF 36 101 4.1E-24 T 12-10-2018 IPR021647 Copper binding periplasmic protein CusF ALFP_0401 200042fc6fdab6e0d26e8e22133dd2da 101 Gene3D G3DSA:2.40.50.320 30 101 1.0E-21 T 12-10-2018 ALFP_0613 06112e02e848ee4a9dd7d7bbe14c27a5 69 Pfam PF10932 Protein of unknown function (DUF2783) 4 62 3.3E-26 T 12-10-2018 IPR021233 Protein of unknown function DUF2783 ALFP_2026 9aeab20c4567af7c947bc88d25c72b4f 385 Pfam PF07690 Major Facilitator Superfamily 11 277 8.8E-17 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ALFP_2026 9aeab20c4567af7c947bc88d25c72b4f 385 Gene3D G3DSA:1.20.1250.20 2 377 2.6E-33 T 12-10-2018 ALFP_2026 9aeab20c4567af7c947bc88d25c72b4f 385 SUPERFAMILY SSF103473 12 379 4.97E-39 T 12-10-2018 IPR036259 MFS transporter superfamily ALFP_0204 0dcf429fd526dc8aaeae8e3f97e74e11 336 Pfam PF01757 Acyltransferase family 2 322 4.8E-34 T 12-10-2018 IPR002656 Acyltransferase 3 GO:0016747 ALFP_0408 4262572b5951dca270fd2c5a05ddf4d2 300 Pfam PF00950 ABC 3 transport family 15 272 2.8E-53 T 12-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 ALFP_0408 4262572b5951dca270fd2c5a05ddf4d2 300 SUPERFAMILY SSF81345 13 269 4.84E-23 T 12-10-2018 IPR037294 ABC transporter, BtuC-like ALFP_0381 8031edeaf3fe83049b635778c1e1debd 116 Pfam PF03788 LrgA family 12 104 9.2E-26 T 12-10-2018 IPR005538 LrgA/CidA family GO:0016021 ALFP_1553 79d90d998416cafd1f57f2512adb46e8 64 Pfam PF07869 Protein of unknown function (DUF1656) 4 58 3.5E-19 T 12-10-2018 IPR012451 Protein of unknown function DUF1656 ALFP_1279 3dab4da9e1d1859c86568ceb81fb7c05 426 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 16 419 2.4E-113 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_1279 3dab4da9e1d1859c86568ceb81fb7c05 426 PIRSF PIRSF006066 1 425 4.0E-118 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_1279 3dab4da9e1d1859c86568ceb81fb7c05 426 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 6 412 8.8E-98 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_0226 ccb5b24ee5681ea1a9f0525b95a89bed 354 Pfam PF02653 Branched-chain amino acid transport system / permease component 50 329 9.2E-30 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_0113 3be08614521f970f65dd600544f15d72 259 Pfam PF01925 Sulfite exporter TauE/SafE 24 253 5.4E-31 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 ALFP_1329 2cf5dfa667319e4699e667dc69e5f332 159 Pfam PF04314 Copper chaperone PCu(A)C 28 129 1.4E-35 T 12-10-2018 IPR007410 Copper chaperone PCuAC ALFP_1329 2cf5dfa667319e4699e667dc69e5f332 159 SUPERFAMILY SSF110087 5 143 1.96E-43 T 12-10-2018 IPR036182 Copper chaperone PCuAC superfamily ALFP_1329 2cf5dfa667319e4699e667dc69e5f332 159 Gene3D G3DSA:2.60.40.1890 31 147 6.4E-36 T 12-10-2018 IPR036182 Copper chaperone PCuAC superfamily ALFP_1293 33c8080b5515129f8392491b9be16b5b 545 Pfam PF03929 PepSY-associated TM region 2 372 3.9E-64 T 12-10-2018 IPR005625 PepSY-associated TM protein ALFP_0264 6864661340b305167a75a0285c326caf 300 Pfam PF01136 Peptidase family U32 93 258 1.8E-12 T 12-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 ALFP_0194 1c323a444c010f8cae683e6575d3d7f5 174 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 38 168 8.7E-27 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_2772 1221182f43009229c65246cc302f7765 183 Pfam PF04612 Type II secretion system (T2SS), protein M 21 177 1.9E-20 T 12-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 ALFP_0860 a4cba9aed98a517e13adaada4305cc24 194 Pfam PF04120 Low affinity iron permease 73 189 6.8E-50 T 12-10-2018 IPR007251 Low affinity iron permease, Fet4 GO:0055085 ALFP_2061 882b42991567dd8e5dd13a46ddfd0169 205 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 29 160 2.1E-24 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_3148 74a0d6a3f11a9d8a84ab5b887b4162ec 302 Pfam PF02687 FtsX-like permease family 206 299 2.2E-11 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 ALFP_3148 74a0d6a3f11a9d8a84ab5b887b4162ec 302 PIRSF PIRSF003097 2 301 5.0E-54 T 12-10-2018 IPR004513 Cell division protein FtsX GO:0016021 ALFP_3573 4f2eca07a198fb54a66eaa2e9b80fcf8 102 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 85 2.0E-9 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ALFP_3573 4f2eca07a198fb54a66eaa2e9b80fcf8 102 SUPERFAMILY SSF54292 1 101 3.01E-18 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 ALFP_3573 4f2eca07a198fb54a66eaa2e9b80fcf8 102 Gene3D G3DSA:3.10.20.30 2 97 6.9E-16 T 12-10-2018 IPR012675 Beta-grasp domain superfamily ALFP_3438 a27b2dc56224bae2861e09254215a08e 77 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 2.7E-23 T 12-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 ALFP_3438 a27b2dc56224bae2861e09254215a08e 77 Pfam PF02416 mttA/Hcf106 family 5 54 2.6E-14 T 12-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 ALFP_3438 a27b2dc56224bae2861e09254215a08e 77 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 75 22.946 T 12-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 ALFP_3336 ce0ccbd2648d6e33cdf23e991e58bc2b 147 PIRSF PIRSF015875 1 147 2.3E-48 T 12-10-2018 IPR007418 Protein of unknown function DUF474 ALFP_1730 88ced1375bcefd46fa31770a80cdf843 569 SUPERFAMILY SSF48208 220 430 4.68E-15 T 12-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 ALFP_2424 f3dc99c62d3b771c1311a255a17a777c 203 SUPERFAMILY SSF51182 53 187 1.03E-19 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily ALFP_2424 f3dc99c62d3b771c1311a255a17a777c 203 Pfam PF07883 Cupin domain 94 165 4.7E-10 T 12-10-2018 IPR013096 Cupin 2, conserved barrel ALFP_2424 f3dc99c62d3b771c1311a255a17a777c 203 Gene3D G3DSA:2.60.120.10 76 200 9.9E-16 T 12-10-2018 IPR014710 RmlC-like jelly roll fold ALFP_2276 abe7baa63e299a6d382bdddf6d30ec71 61 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 5 46 4.3E-15 T 12-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type ALFP_2276 abe7baa63e299a6d382bdddf6d30ec71 61 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 4 48 1.1E-14 T 12-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type ALFP_3363 688aa3433c12e800129164d3ca7e4df4 446 TIGRFAM TIGR04247 NosD_copper_fam: nitrous oxide reductase family maturation protein NosD 52 428 1.2E-139 T 12-10-2018 IPR026464 Nitrous oxide reductase family maturation protein NosD ALFP_3363 688aa3433c12e800129164d3ca7e4df4 446 SMART SM00722 59 209 1.4E-9 T 12-10-2018 IPR006633 Carbohydrate-binding/sugar hydrolysis domain ALFP_3363 688aa3433c12e800129164d3ca7e4df4 446 SMART SM00722 215 375 2.7E-13 T 12-10-2018 IPR006633 Carbohydrate-binding/sugar hydrolysis domain ALFP_3363 688aa3433c12e800129164d3ca7e4df4 446 Gene3D G3DSA:2.160.20.10 205 371 3.4E-13 T 12-10-2018 IPR012334 Pectin lyase fold ALFP_3363 688aa3433c12e800129164d3ca7e4df4 446 Gene3D G3DSA:2.160.20.10 74 204 1.5E-14 T 12-10-2018 IPR012334 Pectin lyase fold ALFP_3363 688aa3433c12e800129164d3ca7e4df4 446 Pfam PF05048 Periplasmic copper-binding protein (NosD) 174 391 4.3E-54 T 12-10-2018 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 ALFP_3363 688aa3433c12e800129164d3ca7e4df4 446 SMART SM00710 107 135 840.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat ALFP_3363 688aa3433c12e800129164d3ca7e4df4 446 SMART SM00710 300 321 540.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat ALFP_3363 688aa3433c12e800129164d3ca7e4df4 446 SMART SM00710 255 277 5700.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat ALFP_3363 688aa3433c12e800129164d3ca7e4df4 446 SMART SM00710 137 158 1.1 T 12-10-2018 IPR006626 Parallel beta-helix repeat ALFP_3363 688aa3433c12e800129164d3ca7e4df4 446 SMART SM00710 189 210 1300.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat ALFP_3363 688aa3433c12e800129164d3ca7e4df4 446 SMART SM00710 278 299 600.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat ALFP_3363 688aa3433c12e800129164d3ca7e4df4 446 SMART SM00710 211 232 2400.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat ALFP_3363 688aa3433c12e800129164d3ca7e4df4 446 SMART SM00710 159 188 230.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat ALFP_3363 688aa3433c12e800129164d3ca7e4df4 446 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 272 313 2.3E-5 T 12-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 ALFP_3363 688aa3433c12e800129164d3ca7e4df4 446 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 294 338 1.4E-4 T 12-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 ALFP_3363 688aa3433c12e800129164d3ca7e4df4 446 SUPERFAMILY SSF51126 46 417 1.07E-69 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor ALFP_2961 70b9abe3852aadcdeff750a1245b1a3c 437 Pfam PF02667 Short chain fatty acid transporter 2 436 1.0E-149 T 12-10-2018 IPR006160 Short chain fatty acid transporter AtoE ALFP_1726 c97ef98d8d1f6cb713964072ac606337 422 SUPERFAMILY SSF56954 20 413 8.89E-58 T 12-10-2018 ALFP_1726 c97ef98d8d1f6cb713964072ac606337 422 Gene3D G3DSA:1.20.1600.10 12 417 3.6E-56 T 12-10-2018 ALFP_1726 c97ef98d8d1f6cb713964072ac606337 422 Pfam PF02321 Outer membrane efflux protein 25 204 3.7E-23 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_1726 c97ef98d8d1f6cb713964072ac606337 422 Pfam PF02321 Outer membrane efflux protein 240 404 1.3E-18 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 ALFP_1460 f07161f0132ec0a0357b67553c4a306f 155 Gene3D G3DSA:3.10.129.10 12 150 8.0E-31 T 12-10-2018 ALFP_1460 f07161f0132ec0a0357b67553c4a306f 155 Pfam PF03061 Thioesterase superfamily 59 133 5.9E-14 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 ALFP_1460 f07161f0132ec0a0357b67553c4a306f 155 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 41 145 7.1E-17 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 ALFP_1460 f07161f0132ec0a0357b67553c4a306f 155 SUPERFAMILY SSF54637 30 147 4.06E-26 T 12-10-2018 IPR029069 HotDog domain superfamily ALFP_1283 8d70a2bd0a00a681e4fd40aa2c65bd36 166 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 27 156 2.5E-27 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_2904 12d1af6e0050b5b96f9a0ad7f2ea3a2f 905 Pfam PF05170 AsmA family 1 263 2.0E-26 T 12-10-2018 IPR007844 AsmA ALFP_2904 12d1af6e0050b5b96f9a0ad7f2ea3a2f 905 Pfam PF05170 AsmA family 498 768 5.4E-24 T 12-10-2018 IPR007844 AsmA ALFP_3229 68b0903d4f7486f2330f4022405d6606 527 PIRSF PIRSF006446 354 522 1.9E-35 T 12-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 ALFP_3229 68b0903d4f7486f2330f4022405d6606 527 PIRSF PIRSF006446 2 327 5.7E-114 T 12-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 ALFP_3229 68b0903d4f7486f2330f4022405d6606 527 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 503 4.7E-175 T 12-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 ALFP_0350 ba7b8380597d727780e187efde0db629 180 Pfam PF07291 Methylamine utilisation protein MauE 2 167 7.0E-25 T 12-10-2018 IPR009908 Methylamine utilisation protein, MauE GO:0016021|GO:0030416 ALFP_2746 7edb89fc7766545604ff8e9410ee7425 160 Gene3D G3DSA:1.25.40.600 1 160 1.1E-39 T 12-10-2018 IPR038523 AmiS/UreI transporter superfamily ALFP_2746 7edb89fc7766545604ff8e9410ee7425 160 Pfam PF02293 AmiS/UreI family transporter 1 158 8.5E-44 T 12-10-2018 IPR003211 AmiS/UreI transporter GO:0016020 ALFP_2583 3df705b7b3f7188e67ee43e7ee518353 357 Pfam PF00146 NADH dehydrogenase 28 345 1.6E-122 T 12-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2583 3df705b7b3f7188e67ee43e7ee518353 357 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 233 246 - T 12-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2583 3df705b7b3f7188e67ee43e7ee518353 357 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 21 352 24.601 T 12-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 ALFP_2920 3364ac1e89ade6d73255206aeb6ce466 631 Pfam PF02653 Branched-chain amino acid transport system / permease component 351 607 2.8E-40 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_2920 3364ac1e89ade6d73255206aeb6ce466 631 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 291 7.6E-33 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_1169 721c44304871935759c8c6f490d7c279 124 Pfam PF04143 Sulphur transport 52 114 1.2E-9 T 12-10-2018 IPR007272 Sulphur transport domain ALFP_0008 060ef4bc84f55b0dd354276146271f4a 344 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 31 309 1.1E-35 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 ALFP_0008 060ef4bc84f55b0dd354276146271f4a 344 SUPERFAMILY SSF53850 61 259 5.43E-5 T 12-10-2018 ALFP_0008 060ef4bc84f55b0dd354276146271f4a 344 Gene3D G3DSA:3.40.190.170 27 338 1.2E-82 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily ALFP_3604 22b771077fb11d5fb14d09345cf14142 680 Pfam PF05140 ResB-like family 21 669 3.3E-150 T 12-10-2018 IPR007816 ResB-like domain ALFP_2556 6f4c18a215986d0dbbe3e927e1c4cc37 349 Pfam PF02653 Branched-chain amino acid transport system / permease component 105 334 8.6E-21 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_0414 66ce3e1f71e17c01cbd18a009587e53a 276 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 4 262 1.8E-31 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 ALFP_0414 66ce3e1f71e17c01cbd18a009587e53a 276 PIRSF PIRSF026649 1 271 1.2E-68 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 ALFP_1408 1bb8be884acb36c4cb49035b7299e8c1 134 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 132 5.7E-21 T 12-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 ALFP_0028 f872b4f40c5fbdadb7008922c851e44b 589 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 15 524 9.6E-102 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_2156 caf4779c4bf330b39a32fb156d8fbe9e 316 Gene3D G3DSA:3.30.70.3460 174 314 1.2E-33 T 12-10-2018 ALFP_2156 caf4779c4bf330b39a32fb156d8fbe9e 316 Gene3D G3DSA:3.30.70.3460 54 140 4.0E-18 T 12-10-2018 ALFP_3219 6cd82120e0d5f0f316579c2a4abf6ba9 180 Pfam PF09335 SNARE associated Golgi protein 56 165 8.5E-10 T 12-10-2018 IPR032816 SNARE associated Golgi protein ALFP_0961 8b64a175151d8f8b14be7863909a1401 234 TIGRFAM TIGR03135 malonate_mdcG: malonate decarboxylase holo-[acyl-carrier-protein] synthase 8 216 6.4E-49 T 12-10-2018 IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 MetaCyc: PWY-5796 ALFP_0961 8b64a175151d8f8b14be7863909a1401 234 Pfam PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG 8 216 9.8E-47 T 12-10-2018 IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 MetaCyc: PWY-5796 ALFP_1956 73e82403bcb8203cfffadb738030d672 277 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 7 276 72.802 T 12-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein ALFP_1956 73e82403bcb8203cfffadb738030d672 277 Pfam PF03618 Kinase/pyrophosphorylase 10 267 2.8E-80 T 12-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 ALFP_2995 aa96aa566ca079d41bb8f5cc4e70211a 346 Pfam PF00924 Mechanosensitive ion channel 129 265 1.2E-22 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 ALFP_2995 aa96aa566ca079d41bb8f5cc4e70211a 346 SUPERFAMILY SSF50182 170 235 1.57E-14 T 12-10-2018 IPR010920 LSM domain superfamily ALFP_2853 58e65ddfca301fedb374235d8a69ec67 305 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 277 2.3E-32 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_0715 4643c56c107a5accc1262c6cec4659d0 105 Pfam PF05957 Bacterial protein of unknown function (DUF883) 14 105 1.3E-27 T 12-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 ALFP_1781 e2fc6c1145ca7795a4ab6dc02e1d3678 325 Pfam PF09950 Uncharacterized protein conserved in bacteria (DUF2184) 59 319 1.1E-79 T 12-10-2018 IPR020049 Protein of unknown function DUF2184 ALFP_1781 e2fc6c1145ca7795a4ab6dc02e1d3678 325 PIRSF PIRSF029202 1 319 3.4E-64 T 12-10-2018 IPR020049 Protein of unknown function DUF2184 ALFP_3124 9a498bedbaafa2a13a8b210a9943d934 145 SUPERFAMILY SSF53383 1 141 2.21E-24 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase ALFP_3124 9a498bedbaafa2a13a8b210a9943d934 145 Gene3D G3DSA:3.90.1150.10 1 145 6.9E-37 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 ALFP_3124 9a498bedbaafa2a13a8b210a9943d934 145 Pfam PF00202 Aminotransferase class-III 8 135 6.9E-10 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ALFP_1233 c403b797a5793da1555d369c88c778a4 111 Pfam PF05400 Flagellar protein FliT 22 104 2.5E-17 T 12-10-2018 IPR008622 Flagellar protein FliT ALFP_1233 c403b797a5793da1555d369c88c778a4 111 Gene3D G3DSA:1.20.58.380 3 108 5.5E-22 T 12-10-2018 ALFP_3042 ddde797718bda4b23fbc99e1ff0f6cc9 313 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 52 273 1.2E-32 T 12-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 ALFP_0029 6dac570334ecda86a3ac6f0281fc4ec5 197 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 31 161 1.8E-23 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_1546 3a3a3af4c71f7de8272b25cb639faf2f 149 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 11 144 1.0E-23 T 12-10-2018 IPR009936 Protein of unknown function DUF1468 ALFP_1241 40555d31708dcc362f42d23b21e5c792 698 Pfam PF05787 Bacterial protein of unknown function (DUF839) 87 660 8.7E-146 T 12-10-2018 IPR008557 Protein of unknown function DUF839 ALFP_2646 9d1b17d674d237336a1dff18c206f805 584 Pfam PF15984 Bacterial collagen, middle region 77 180 5.4E-14 T 12-10-2018 IPR031929 Bacterial collagen-like protein, middle domain ALFP_2646 9d1b17d674d237336a1dff18c206f805 584 Pfam PF15984 Bacterial collagen, middle region 185 340 1.9E-14 T 12-10-2018 IPR031929 Bacterial collagen-like protein, middle domain ALFP_0348 7ed7ee397c2dbcd24928f7a0cef8e22d 290 Pfam PF13557 Putative MetA-pathway of phenol degradation 58 286 2.0E-21 T 12-10-2018 IPR025737 MetA-pathway of phenol degradation, putative ALFP_0456 7ea0a6a3e4431f62337d4533c4e11bae 362 Pfam PF06250 Protein of unknown function (DUF1016) 15 347 3.5E-117 T 12-10-2018 IPR009362 Protein of unknown function DUF1016 ALFP_0915 afb506f9e0b8ad960ec6320d9e828e84 133 Pfam PF05232 Chlorhexidine efflux transporter 59 121 1.4E-20 T 12-10-2018 IPR007896 Chlorhexidine efflux transporter ALFP_0915 afb506f9e0b8ad960ec6320d9e828e84 133 Pfam PF05232 Chlorhexidine efflux transporter 1 53 1.7E-9 T 12-10-2018 IPR007896 Chlorhexidine efflux transporter ALFP_3520 2282ff220ac27eaf0e1390db008082c2 74 Pfam PF11174 Protein of unknown function (DUF2970) 15 68 3.1E-22 T 12-10-2018 IPR021344 Protein of unknown function DUF2970 ALFP_3377 5754e52223ad256626fac6c8818d666e 276 Gene3D G3DSA:3.20.20.370 3 254 1.0E-6 T 12-10-2018 ALFP_1043 c70629d0af54a407624b1010a7c0b230 580 Pfam PF02652 L-lactate permease 2 541 5.3E-105 T 12-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 ALFP_3536 97d3535f2b9ae82f7f43057cc2f351c2 219 Pfam PF04367 Protein of unknown function (DUF502) 56 161 7.0E-36 T 12-10-2018 IPR007462 Protein of unknown function DUF502 ALFP_3233 8c9ff76fcdf0f3d17ab274120e8931f6 206 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 8 182 3.2E-36 T 12-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 ALFP_3233 8c9ff76fcdf0f3d17ab274120e8931f6 206 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 13 181 2.9E-32 T 12-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related ALFP_0584 9ebe742802122147360ed1f846f892ed 211 SUPERFAMILY SSF52833 66 191 5.14E-17 T 12-10-2018 IPR036249 Thioredoxin-like superfamily ALFP_0584 9ebe742802122147360ed1f846f892ed 211 Pfam PF02630 SCO1/SenC 67 158 2.6E-8 T 12-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 ALFP_0584 9ebe742802122147360ed1f846f892ed 211 Gene3D G3DSA:3.40.30.10 43 205 9.9E-27 T 12-10-2018 ALFP_1449 ffcc9d562e6d27c17faec423e20a632c 127 Pfam PF13663 Domain of unknown function (DUF4148) 5 61 2.5E-10 T 12-10-2018 IPR025421 Protein of unknown function DUF4148 ALFP_1449 ffcc9d562e6d27c17faec423e20a632c 127 Pfam PF13663 Domain of unknown function (DUF4148) 102 122 4.1E-6 T 12-10-2018 IPR025421 Protein of unknown function DUF4148 ALFP_1449 ffcc9d562e6d27c17faec423e20a632c 127 Pfam PF13663 Domain of unknown function (DUF4148) 69 95 2.5E-8 T 12-10-2018 IPR025421 Protein of unknown function DUF4148 ALFP_0601 44b39d11e81f2581d7804e736144546e 374 Pfam PF00953 Glycosyl transferase family 4 79 234 2.9E-28 T 12-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 ALFP_3286 e02821e7c2ed4a95fc3bcf86b49b21fc 423 Pfam PF04932 O-Antigen ligase 189 342 1.5E-18 T 12-10-2018 IPR007016 O-antigen ligase-related ALFP_0083 ce1bf1064a1c615fa01f2527c6ce375d 429 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 18 426 3.0E-99 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_0083 ce1bf1064a1c615fa01f2527c6ce375d 429 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 9 421 8.7E-96 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ALFP_0083 ce1bf1064a1c615fa01f2527c6ce375d 429 PIRSF PIRSF006066 1 429 1.1E-95 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 ALFP_1322 7daf5d687316084f19030f36e1bb2879 60 Pfam PF17090 Uncharacterised protein family 3 59 1.2E-10 T 12-10-2018 IPR031381 Uncharacterised protein YtcA ALFP_2001 fff5b4e2dfe9c89319a30817e86ff5f6 293 Pfam PF02653 Branched-chain amino acid transport system / permease component 7 274 1.1E-28 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_2832 00e59c09efb6a9d3f2f2e92b7ea4db87 501 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 438 8.5E-155 T 12-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane ALFP_3034 a2a2948282c0b603051fabcb060434e2 225 Pfam PF07424 TrbM 26 193 1.7E-50 T 12-10-2018 IPR009989 TrbM ALFP_0225 12b16b3e14d75df018a954a2e337a44a 309 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 294 1.9E-31 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_1688 d704f9513ce66628e851a5e9eb3e41eb 124 Pfam PF14903 WG containing repeat 26 59 5.6E-4 T 12-10-2018 IPR032774 WG containing repeat ALFP_1688 d704f9513ce66628e851a5e9eb3e41eb 124 Pfam PF14903 WG containing repeat 68 88 0.014 T 12-10-2018 IPR032774 WG containing repeat ALFP_0683 824e30d542a7072ad3eb86fbce0872ce 211 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 56 179 8.6E-24 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_0912 648a39200f031f79f8282451b7c25bbb 133 Pfam PF07681 DoxX 8 87 2.4E-13 T 12-10-2018 IPR032808 DoxX family ALFP_0171 8ba3ef1e9a1ee909dda320dafb7ae2e4 319 Pfam PF04536 TPM domain 54 175 2.2E-40 T 12-10-2018 IPR007621 TPM domain ALFP_0171 8ba3ef1e9a1ee909dda320dafb7ae2e4 319 Gene3D G3DSA:3.10.310.50 39 188 1.0E-50 T 12-10-2018 ALFP_0039 418daeb3436f6f22f09638eee4d32e54 326 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 304 1.4E-36 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_0994 6d3b48281799dd53274eabc40d1c1b5a 106 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 11 94 4.3E-36 T 12-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 ALFP_3699 6cdb224e481991ed6caff54266d272b1 327 Pfam PF13387 Domain of unknown function (DUF4105) 117 270 1.6E-44 T 12-10-2018 IPR025178 Domain of unknown function DUF4105 ALFP_0542 c236b2781fd09cd8d65a4e2f2add7e20 283 Pfam PF01578 Cytochrome C assembly protein 42 274 2.1E-22 T 12-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 ALFP_1312 bc9a3ce6854c0e224c124bde9d5bef25 320 Pfam PF01548 Transposase 9 145 4.4E-19 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 ALFP_1312 bc9a3ce6854c0e224c124bde9d5bef25 320 Pfam PF02371 Transposase IS116/IS110/IS902 family 189 265 1.3E-19 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 ALFP_1328 875b145d91917929ace4acb9386ab6f7 189 Pfam PF03729 Short repeat of unknown function (DUF308) 82 150 8.6E-12 T 12-10-2018 IPR005325 Protein of unknown function DUF308, membrane ALFP_1328 875b145d91917929ace4acb9386ab6f7 189 Pfam PF03729 Short repeat of unknown function (DUF308) 27 95 2.9E-11 T 12-10-2018 IPR005325 Protein of unknown function DUF308, membrane ALFP_2102 34caef2ccd4dde0c6dbbdc214e57a5c6 180 Pfam PF11136 Protein of unknown function (DUF2889) 2 126 1.7E-41 T 12-10-2018 IPR021312 Protein of unknown function DUF2889 ALFP_2512 47b8c7f9f2dc629a6974d6153d25d7fa 236 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 26 228 2.3E-42 T 12-10-2018 IPR006214 Bax inhibitor 1-related ALFP_2856 1951b68e190c5332ace51c0c6cbc8cad 63 Pfam PF01679 Proteolipid membrane potential modulator 1 46 3.7E-6 T 12-10-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 ALFP_3701 3034126f5daf1028fb669b69506bdc16 117 SUPERFAMILY SSF46785 35 86 7.14E-5 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily ALFP_0085 54c7b3d08873a89394335f8989e42607 316 Pfam PF01548 Transposase 9 145 4.1E-19 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 ALFP_0085 54c7b3d08873a89394335f8989e42607 316 Pfam PF02371 Transposase IS116/IS110/IS902 family 189 265 5.0E-20 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 ALFP_2115 0068725386d2ef2ed48efd0e48583884 105 Pfam PF04341 Protein of unknown function, DUF485 15 100 2.3E-22 T 12-10-2018 IPR007436 Protein of unknown function DUF485 ALFP_2273 2e42eeb1afff1bd3e958e8064159eccd 57 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 8 41 5.4E-7 T 12-10-2018 IPR008621 Cbb3-type cytochrome oxidase component ALFP_1156 168f3ff1f69eb1246564f9df9e3c8fda 352 Pfam PF06674 Protein of unknown function (DUF1176) 37 346 4.7E-89 T 12-10-2018 IPR009560 Protein of unknown function DUF1176 ALFP_3326 df98cf11258419d8b832991f212329ec 507 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 21 445 9.0E-142 T 12-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane ALFP_2996 b17f7d3a5fb8d479298a723741fbba79 115 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 68 86 3.2E-5 T 12-10-2018 IPR019626 Stress-induced protein, KGG, repeat ALFP_2996 b17f7d3a5fb8d479298a723741fbba79 115 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 45 61 4.9E-5 T 12-10-2018 IPR019626 Stress-induced protein, KGG, repeat ALFP_2996 b17f7d3a5fb8d479298a723741fbba79 115 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 93 109 2.7E-4 T 12-10-2018 IPR019626 Stress-induced protein, KGG, repeat ALFP_2996 b17f7d3a5fb8d479298a723741fbba79 115 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 15 36 2.3E-6 T 12-10-2018 IPR019626 Stress-induced protein, KGG, repeat ALFP_2986 84de2dfc27348451cd513c5abaa13bf2 367 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 175 6.2E-28 T 12-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase ALFP_0006 7d11b709239382f25890739408100a30 148 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 12 136 2.0E-14 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_3311 8f243a309e30be709e9e4052965b9e87 186 Pfam PF12545 Filamentous haemagglutinin family outer membrane protein 3 78 1.1E-24 T 12-10-2018 IPR021026 Filamentous haemagglutinin family outer membrane protein, domain of unknown function DUF3739 ALFP_2201 b5242f2fea57360f9b2481ac741a6325 377 TIGRFAM TIGR00843 benE: benzoate transporter 3 371 8.1E-125 T 12-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 ALFP_2201 b5242f2fea57360f9b2481ac741a6325 377 Pfam PF03594 Benzoate membrane transport protein 2 370 1.9E-139 T 12-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 ALFP_2633 70c8b80b0d8736391a5d03c3ea8f9737 162 Pfam PF12266 Protein of unknown function (DUF3613) 99 154 8.9E-9 T 12-10-2018 IPR022053 Protein of unknown function DUF3613 ALFP_0392 0ded9464159741cd7bc193898051b3ce 110 SUPERFAMILY SSF55186 5 101 4.45E-17 T 12-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 ALFP_0392 0ded9464159741cd7bc193898051b3ce 110 Gene3D G3DSA:3.30.980.10 2 103 2.9E-9 T 12-10-2018 ALFP_0392 0ded9464159741cd7bc193898051b3ce 110 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 67 100 3.9E-7 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 ALFP_0176 2936643cf364f30238190adb6b3cc859 82 Pfam PF04226 Transglycosylase associated protein 33 80 4.5E-16 T 12-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 ALFP_3210 c2518da8e4c7ccf520db347a08e0c7a2 209 Pfam PF02036 SCP-2 sterol transfer family 20 115 3.9E-5 T 12-10-2018 IPR003033 SCP2 sterol-binding domain ALFP_1296 bc12eddc755357fd86daec9a152c34ac 335 Pfam PF04143 Sulphur transport 25 327 1.5E-54 T 12-10-2018 IPR007272 Sulphur transport domain ALFP_2385 e26e1bc0ba58a8405181cbb1a235bebb 191 Pfam PF01169 Uncharacterized protein family UPF0016 7 80 8.4E-21 T 12-10-2018 IPR001727 Gdt1 family ALFP_2385 e26e1bc0ba58a8405181cbb1a235bebb 191 Pfam PF01169 Uncharacterized protein family UPF0016 104 178 7.7E-24 T 12-10-2018 IPR001727 Gdt1 family ALFP_1061 a639d9dc381a61034a5579b1f3ca22db 168 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 32 159 1.5E-15 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_1559 2835840b78462ba7048111d99d4ff986 100 Pfam PF04341 Protein of unknown function, DUF485 9 96 1.5E-30 T 12-10-2018 IPR007436 Protein of unknown function DUF485 ALFP_2690 8c8846929feedd59f45c7bf2fad25feb 328 Pfam PF02653 Branched-chain amino acid transport system / permease component 33 296 2.1E-28 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_0652 197e818fa5e76c755e6ba98e7c9d3566 306 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 293 9.2E-36 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_0691 36f8b8d6e6cb376a7f0ad35bf8332ed6 160 Pfam PF11697 Protein of unknown function (DUF3293) 55 127 6.5E-19 T 12-10-2018 IPR021710 Protein of unknown function DUF3293 ALFP_0240 6ee821a924990129e7e796a3d1860799 206 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 36 165 3.0E-18 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ ALFP_2083 56ceb7f67025955177ce8fd7ef833aae 155 Pfam PF00482 Type II secretion system (T2SS), protein F 16 142 1.3E-10 T 12-10-2018 IPR018076 Type II secretion system F domain ALFP_2515 c3d58a6a92e512d054328851e195ab9f 201 Pfam PF13470 PIN domain 9 107 2.4E-11 T 12-10-2018 IPR002716 PIN domain ALFP_0930 a77c9d94efbf9352393af400df90b512 216 Pfam PF02163 Peptidase family M50 142 190 1.7E-6 T 12-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 ALFP_0604 f76eec9a611d76119e0ca8d57270b095 453 Pfam PF03023 MviN-like protein 46 441 9.7E-33 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ ALFP_2648 7ac4ddd415c730742a3651181ee1d528 699 Pfam PF15984 Bacterial collagen, middle region 355 456 8.3E-12 T 12-10-2018 IPR031929 Bacterial collagen-like protein, middle domain ALFP_2648 7ac4ddd415c730742a3651181ee1d528 699 Pfam PF15984 Bacterial collagen, middle region 193 297 4.8E-14 T 12-10-2018 IPR031929 Bacterial collagen-like protein, middle domain ALFP_2989 86af2388d64d722cf3672dbe694a6499 148 Pfam PF04214 Protein of unknown function, DUF 59 128 3.1E-23 T 12-10-2018 IPR007332 Protein of unknown function DUF411 ALFP_1772 600d66a8741a275a4b45200523ba30d9 111 Pfam PF06356 Protein of unknown function (DUF1064) 3 100 1.3E-28 T 12-10-2018 IPR009414 Protein of unknown function DUF1064 ALFP_0453 27dbb8f606aa75c9c08d69aed40498c7 463 Pfam PF13289 SIR2-like domain 209 385 1.3E-11 T 12-10-2018 IPR039444 SIR2-like domain ALFP_0417 0ef9c070c4fbceb85cf4147142b280e3 112 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 1 103 4.2E-34 T 12-10-2018 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV ALFP_3718 880a7bbdec3db6f1a6b02199dfdd9269 319 Pfam PF02653 Branched-chain amino acid transport system / permease component 27 293 2.3E-43 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 ALFP_2436 ce06a6db505ab471afc83d4fe4a4555e 200 Pfam PF13590 Domain of unknown function (DUF4136) 22 185 1.4E-20 T 12-10-2018 IPR025411 Domain of unknown function DUF4136 ALFP_1291 aeca06035345a57a7bde8062fc0350d6 297 Pfam PF11804 Protein of unknown function (DUF3325) 10 94 1.4E-23 T 12-10-2018 IPR021762 Protein of unknown function DUF3325 ALFP_1458 64390188ac6ce6a7617e5b136609a3dd 268 Pfam PF01925 Sulfite exporter TauE/SafE 6 265 1.9E-38 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 ALFP_1158 f4540d870424203f95a6be7226027b37 362 Pfam PF01594 AI-2E family transporter 13 341 5.6E-52 T 12-10-2018 IPR002549 Transmembrane protein TqsA-like ALFP_2754 a56b6889afbfd42b5bdb562aad25c6fd 141 Pfam PF13924 Lipocalin-like domain 10 138 3.3E-28 T 12-10-2018 IPR024311 Lipocalin-like domain ALFP_0380 1a3e0916d8d04c2ccda667b06e6f5c15 244 Pfam PF04172 LrgB-like family 23 234 1.6E-74 T 12-10-2018 IPR007300 CidB/LrgB family ALFP_2374 7ae5e392a5e97dc38ac0af82b9467aec 103 Pfam PF04341 Protein of unknown function, DUF485 13 99 6.2E-21 T 12-10-2018 IPR007436 Protein of unknown function DUF485 ALFP_0319 a420743db32f1d4ea52212243e843f32 304 Pfam PF00487 Fatty acid desaturase 35 254 7.0E-15 T 12-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629