locus-tag class description CLH39_00005 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLH39_00005 PF00364 Biotin-requiring enzyme CLH39_00005 PF00289 Biotin carboxylase, N-terminal domain CLH39_00005 PF02785 Biotin carboxylase C-terminal domain CLH39_00025 PF01131 DNA topoisomerase CLH39_00025 PF01751 Toprim domain CLH39_00040 PF00593 TonB dependent receptor CLH39_00040 PF07715 TonB-dependent Receptor Plug Domain CLH39_00055 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_00065 PF03480 Bacterial extracellular solute-binding protein, family 7 CLH39_00070 PF00205 Thiamine pyrophosphate enzyme, central domain CLH39_00070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLH39_00070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLH39_00085 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_00090 PF03480 Bacterial extracellular solute-binding protein, family 7 CLH39_00100 PF01048 Phosphorylase superfamily CLH39_00100 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CLH39_00105 PF01274 Malate synthase CLH39_00115 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_00120 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CLH39_00120 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CLH39_00125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_00125 PF03466 LysR substrate binding domain CLH39_00140 PF12833 Helix-turn-helix domain CLH39_00140 PF14525 AraC-binding-like domain CLH39_00150 PF03358 NADPH-dependent FMN reductase CLH39_00155 PF00296 Luciferase-like monooxygenase CLH39_00170 PF03180 NLPA lipoprotein CLH39_00175 PF00296 Luciferase-like monooxygenase CLH39_00180 PF03180 NLPA lipoprotein CLH39_00185 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CLH39_00185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLH39_00185 PF02770 Acyl-CoA dehydrogenase, middle domain CLH39_00190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLH39_00190 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CLH39_00195 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_00200 PF09383 NIL domain CLH39_00200 PF00005 ABC transporter CLH39_00205 PF03180 NLPA lipoprotein CLH39_00210 PF03180 NLPA lipoprotein CLH39_00225 PF00202 Aminotransferase class-III CLH39_00230 PF00817 impB/mucB/samB family CLH39_00230 PF11799 impB/mucB/samB family C-terminal domain CLH39_00235 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLH39_00240 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_00245 PF12911 N-terminal TM domain of oligopeptide transport permease C CLH39_00245 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_00250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLH39_00250 PF00005 ABC transporter CLH39_00255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLH39_00255 PF00005 ABC transporter CLH39_00260 PF08281 Sigma-70, region 4 CLH39_00260 PF04542 Sigma-70 region 2 CLH39_00270 PF00593 TonB dependent receptor CLH39_00270 PF07715 TonB-dependent Receptor Plug Domain CLH39_00275 PF02261 Aspartate decarboxylase CLH39_00285 PF00005 ABC transporter CLH39_00290 PF01613 Flavin reductase like domain CLH39_00295 PF14525 AraC-binding-like domain CLH39_00295 PF12833 Helix-turn-helix domain CLH39_00305 PF01613 Flavin reductase like domain CLH39_00335 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_00365 PF00501 AMP-binding enzyme CLH39_00365 PF13193 AMP-binding enzyme C-terminal domain CLH39_00370 PF00866 Ring hydroxylating beta subunit CLH39_00375 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CLH39_00375 PF00355 Rieske [2Fe-2S] domain CLH39_00380 PF00970 Oxidoreductase FAD-binding domain CLH39_00380 PF00111 2Fe-2S iron-sulfur cluster binding domain CLH39_00380 PF00175 Oxidoreductase NAD-binding domain CLH39_00385 PF04199 Putative cyclase CLH39_00390 PF00795 Carbon-nitrogen hydrolase CLH39_00395 PF01557 Fumarylacetoacetate (FAA) hydrolase family CLH39_00400 PF07883 Cupin domain CLH39_00405 PF01494 FAD binding domain CLH39_00415 PF12802 MarR family CLH39_00430 PF01047 MarR family CLH39_00440 PF00884 Sulfatase CLH39_00440 PF16347 Domain of unknown function (DUF4976) CLH39_00465 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_00470 PF02492 CobW/HypB/UreG, nucleotide-binding domain CLH39_00470 PF07683 Cobalamin synthesis protein cobW C-terminal domain CLH39_00475 PF00892 EamA-like transporter family CLH39_00485 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_00490 PF17645 Arylmalonate decarboxylase CLH39_00495 PF00378 Enoyl-CoA hydratase/isomerase CLH39_00500 PF00392 Bacterial regulatory proteins, gntR family CLH39_00500 PF00155 Aminotransferase class I and II CLH39_00505 PF00561 alpha/beta hydrolase fold CLH39_00505 PF00364 Biotin-requiring enzyme CLH39_00515 PF00501 AMP-binding enzyme CLH39_00515 PF13193 AMP-binding enzyme C-terminal domain CLH39_00520 PF00005 ABC transporter CLH39_00525 PF02653 Branched-chain amino acid transport system / permease component CLH39_00525 PF11862 Domain of unknown function (DUF3382) CLH39_00530 PF02653 Branched-chain amino acid transport system / permease component CLH39_00540 PF00155 Aminotransferase class I and II CLH39_00545 PF01546 Peptidase family M20/M25/M40 CLH39_00545 PF07687 Peptidase dimerisation domain CLH39_00550 PF07690 Major Facilitator Superfamily CLH39_00555 PF13609 Gram-negative porin CLH39_00560 PF07729 FCD domain CLH39_00560 PF00392 Bacterial regulatory proteins, gntR family CLH39_00565 PF03480 Bacterial extracellular solute-binding protein, family 7 CLH39_00575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_00575 PF03466 LysR substrate binding domain CLH39_00580 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CLH39_00580 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CLH39_00585 PF00355 Rieske [2Fe-2S] domain CLH39_00590 PF00111 2Fe-2S iron-sulfur cluster binding domain CLH39_00590 PF00970 Oxidoreductase FAD-binding domain CLH39_00590 PF00175 Oxidoreductase NAD-binding domain CLH39_00600 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_00605 PF00392 Bacterial regulatory proteins, gntR family CLH39_00605 PF07729 FCD domain CLH39_00610 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLH39_00610 PF04324 BFD-like [2Fe-2S] binding domain CLH39_00620 PF01266 FAD dependent oxidoreductase CLH39_00640 PF00701 Dihydrodipicolinate synthetase family CLH39_00645 PF13609 Gram-negative porin CLH39_00670 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_00685 PF00849 RNA pseudouridylate synthase CLH39_00685 PF01479 S4 domain CLH39_00690 PF01751 Toprim domain CLH39_00690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_00690 PF18053 DNA gyrase B subunit insert domain CLH39_00690 PF00986 DNA gyrase B subunit, carboxyl terminus CLH39_00690 PF00204 DNA gyrase B CLH39_00695 PF00712 DNA polymerase III beta subunit, N-terminal domain CLH39_00695 PF02767 DNA polymerase III beta subunit, central domain CLH39_00695 PF02768 DNA polymerase III beta subunit, C-terminal domain CLH39_00700 PF00308 Bacterial dnaA protein CLH39_00700 PF08299 Bacterial dnaA protein helix-turn-helix CLH39_00700 PF11638 DnaA N-terminal domain CLH39_00705 PF00468 Ribosomal protein L34 CLH39_00710 PF00825 Ribonuclease P CLH39_00715 PF01809 Putative membrane protein insertion efficiency factor CLH39_00720 PF02096 60Kd inner membrane protein CLH39_00720 PF14849 YidC periplasmic domain CLH39_00725 PF00199 Catalase CLH39_00725 PF06628 Catalase-related immune-responsive CLH39_00745 PF01494 FAD binding domain CLH39_00750 PF00857 Isochorismatase family CLH39_00760 PF00561 alpha/beta hydrolase fold CLH39_00765 PF00005 ABC transporter CLH39_00770 PF00005 ABC transporter CLH39_00770 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLH39_00780 PF02653 Branched-chain amino acid transport system / permease component CLH39_00785 PF13458 Periplasmic binding protein CLH39_00800 PF02423 Ornithine cyclodeaminase/mu-crystallin family CLH39_00805 PF00291 Pyridoxal-phosphate dependent enzyme CLH39_00810 PF07687 Peptidase dimerisation domain CLH39_00810 PF01546 Peptidase family M20/M25/M40 CLH39_00815 PF07883 Cupin domain CLH39_00815 PF01381 Helix-turn-helix CLH39_00820 PF10396 GTP-binding protein TrmE N-terminus CLH39_00820 PF12631 MnmE helical domain CLH39_00820 PF01926 50S ribosome-binding GTPase CLH39_00840 PF00145 C-5 cytosine-specific DNA methylase CLH39_00845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_00845 PF00512 His Kinase A (phospho-acceptor) domain CLH39_00855 PF03852 DNA mismatch endonuclease Vsr CLH39_00905 PF02567 Phenazine biosynthesis-like protein CLH39_00915 PF13291 ACT domain CLH39_00915 PF00291 Pyridoxal-phosphate dependent enzyme CLH39_00925 PF02666 Phosphatidylserine decarboxylase CLH39_00935 PF00990 Diguanylate cyclase, GGDEF domain CLH39_00940 PF00149 Calcineurin-like phosphoesterase CLH39_00945 PF00155 Aminotransferase class I and II CLH39_00950 PF13932 GidA associated domain CLH39_00950 PF01134 Glucose inhibited division protein A CLH39_00955 PF02527 rRNA small subunit methyltransferase G CLH39_00960 PF13614 AAA domain CLH39_00965 PF02195 ParB-like nuclease domain CLH39_00965 PF17762 HTH domain found in ParB protein CLH39_00990 PF03143 Elongation factor Tu C-terminal domain CLH39_00990 PF03144 Elongation factor Tu domain 2 CLH39_00990 PF00009 Elongation factor Tu GTP binding domain CLH39_01005 PF02357 Transcription termination factor nusG CLH39_01005 PF00467 KOW motif CLH39_01010 PF00298 Ribosomal protein L11, RNA binding domain CLH39_01010 PF03946 Ribosomal protein L11, N-terminal domain CLH39_01015 PF00687 Ribosomal protein L1p/L10e family CLH39_01020 PF00466 Ribosomal protein L10 CLH39_01025 PF16320 Ribosomal protein L7/L12 dimerisation domain CLH39_01025 PF00542 Ribosomal protein L7/L12 C-terminal domain CLH39_01030 PF04560 RNA polymerase Rpb2, domain 7 CLH39_01030 PF04561 RNA polymerase Rpb2, domain 2 CLH39_01030 PF04565 RNA polymerase Rpb2, domain 3 CLH39_01030 PF04563 RNA polymerase beta subunit CLH39_01030 PF10385 RNA polymerase beta subunit external 1 domain CLH39_01030 PF00562 RNA polymerase Rpb2, domain 6 CLH39_01035 PF00623 RNA polymerase Rpb1, domain 2 CLH39_01035 PF04998 RNA polymerase Rpb1, domain 5 CLH39_01035 PF04983 RNA polymerase Rpb1, domain 3 CLH39_01035 PF04997 RNA polymerase Rpb1, domain 1 CLH39_01035 PF05000 RNA polymerase Rpb1, domain 4 CLH39_01040 PF00127 Copper binding proteins, plastocyanin/azurin family CLH39_01055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_01055 PF00512 His Kinase A (phospho-acceptor) domain CLH39_01055 PF00672 HAMP domain CLH39_01065 PF00486 Transcriptional regulatory protein, C terminal CLH39_01065 PF00072 Response regulator receiver domain CLH39_01070 PF00164 Ribosomal protein S12/S23 CLH39_01075 PF00177 Ribosomal protein S7p/S5e CLH39_01080 PF03144 Elongation factor Tu domain 2 CLH39_01080 PF00679 Elongation factor G C-terminus CLH39_01080 PF14492 Elongation Factor G, domain II CLH39_01080 PF00009 Elongation factor Tu GTP binding domain CLH39_01080 PF03764 Elongation factor G, domain IV CLH39_01085 PF03144 Elongation factor Tu domain 2 CLH39_01085 PF00009 Elongation factor Tu GTP binding domain CLH39_01085 PF03143 Elongation factor Tu C-terminal domain CLH39_01090 PF00338 Ribosomal protein S10p/S20e CLH39_01095 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_01100 PF00005 ABC transporter CLH39_01100 PF00571 CBS domain CLH39_01105 PF00297 Ribosomal protein L3 CLH39_01110 PF00573 Ribosomal protein L4/L1 family CLH39_01115 PF00276 Ribosomal protein L23 CLH39_01120 PF03947 Ribosomal Proteins L2, C-terminal domain CLH39_01120 PF00181 Ribosomal Proteins L2, RNA binding domain CLH39_01125 PF00203 Ribosomal protein S19 CLH39_01130 PF00237 Ribosomal protein L22p/L17e CLH39_01135 PF07650 KH domain CLH39_01135 PF00189 Ribosomal protein S3, C-terminal domain CLH39_01140 PF00252 Ribosomal protein L16p/L10e CLH39_01145 PF00831 Ribosomal L29 protein CLH39_01150 PF00366 Ribosomal protein S17 CLH39_01155 PF12833 Helix-turn-helix domain CLH39_01155 PF12852 Cupin CLH39_01165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLH39_01165 PF02770 Acyl-CoA dehydrogenase, middle domain CLH39_01165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLH39_01170 PF00005 ABC transporter CLH39_01180 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_01185 PF10414 Sirohaem synthase dimerisation region CLH39_01185 PF14824 Sirohaem biosynthesis protein central CLH39_01185 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLH39_01190 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLH39_01190 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLH39_01195 PF00667 FAD binding domain CLH39_01195 PF00175 Oxidoreductase NAD-binding domain CLH39_01195 PF00258 Flavodoxin CLH39_01200 PF00501 AMP-binding enzyme CLH39_01200 PF13193 AMP-binding enzyme C-terminal domain CLH39_01215 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CLH39_01220 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CLH39_01220 PF00378 Enoyl-CoA hydratase/isomerase CLH39_01220 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CLH39_01225 PF00108 Thiolase, N-terminal domain CLH39_01225 PF02803 Thiolase, C-terminal domain CLH39_01230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLH39_01230 PF09317 Domain of unknown function (DUF1974) CLH39_01230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLH39_01230 PF02770 Acyl-CoA dehydrogenase, middle domain CLH39_01240 PF00171 Aldehyde dehydrogenase family CLH39_01245 PF02321 Outer membrane efflux protein CLH39_01255 PF03412 Peptidase C39 family CLH39_01255 PF00005 ABC transporter CLH39_01255 PF00664 ABC transporter transmembrane region CLH39_01260 PF00529 HlyD membrane-fusion protein of T1SS CLH39_01285 PF00238 Ribosomal protein L14p/L23e CLH39_01290 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CLH39_01295 PF00281 Ribosomal protein L5 CLH39_01295 PF00673 ribosomal L5P family C-terminus CLH39_01300 PF00253 Ribosomal protein S14p/S29e CLH39_01305 PF00410 Ribosomal protein S8 CLH39_01310 PF00347 Ribosomal protein L6 CLH39_01315 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CLH39_01320 PF00333 Ribosomal protein S5, N-terminal domain CLH39_01320 PF03719 Ribosomal protein S5, C-terminal domain CLH39_01325 PF00327 Ribosomal protein L30p/L7e CLH39_01330 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CLH39_01335 PF00344 SecY translocase CLH39_01340 PF01176 Translation initiation factor 1A / IF-1 CLH39_01345 PF00444 Ribosomal protein L36 CLH39_01350 PF00416 Ribosomal protein S13/S18 CLH39_01355 PF00411 Ribosomal protein S11 CLH39_01360 PF00163 Ribosomal protein S4/S9 N-terminal domain CLH39_01360 PF01479 S4 domain CLH39_01365 PF01000 RNA polymerase Rpb3/RpoA insert domain CLH39_01365 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CLH39_01365 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CLH39_01370 PF01196 Ribosomal protein L17 CLH39_01375 PF00296 Luciferase-like monooxygenase CLH39_01385 PF12833 Helix-turn-helix domain CLH39_01385 PF14525 AraC-binding-like domain CLH39_01390 PF03091 CutA1 divalent ion tolerance protein CLH39_01395 PF11412 Disulphide bond corrector protein DsbC CLH39_01395 PF02683 Cytochrome C biogenesis protein transmembrane region CLH39_01400 PF00490 Delta-aminolevulinic acid dehydratase CLH39_01405 PF01926 50S ribosome-binding GTPase CLH39_01410 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLH39_01415 PF05140 ResB-like family CLH39_01420 PF01578 Cytochrome C assembly protein CLH39_01425 PF08448 PAS fold CLH39_01425 PF00990 Diguanylate cyclase, GGDEF domain CLH39_01425 PF00563 EAL domain CLH39_01430 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CLH39_01430 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CLH39_01440 PF00905 Penicillin binding protein transpeptidase domain CLH39_01440 PF17092 Penicillin-binding protein OB-like domain CLH39_01440 PF00912 Transglycosylase CLH39_01445 PF01202 Shikimate kinase CLH39_01450 PF01761 3-dehydroquinate synthase CLH39_01455 PF01966 HD domain CLH39_01455 PF13286 Phosphohydrolase-associated domain CLH39_01460 PF17755 UvrA DNA-binding domain CLH39_01460 PF17760 UvrA interaction domain CLH39_01465 PF07690 Major Facilitator Superfamily CLH39_01470 PF00436 Single-strand binding protein family CLH39_01475 PF07715 TonB-dependent Receptor Plug Domain CLH39_01475 PF00593 TonB dependent receptor CLH39_01475 PF07660 Secretin and TonB N terminus short domain CLH39_01480 PF04773 FecR protein CLH39_01480 PF16220 Domain of unknown function (DUF4880) CLH39_01485 PF08281 Sigma-70, region 4 CLH39_01485 PF04542 Sigma-70 region 2 CLH39_01490 PF07729 FCD domain CLH39_01490 PF00392 Bacterial regulatory proteins, gntR family CLH39_01495 PF01557 Fumarylacetoacetate (FAA) hydrolase family CLH39_01500 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_01505 PF01042 Endoribonuclease L-PSP CLH39_01510 PF07690 Major Facilitator Superfamily CLH39_01520 PF00210 Ferritin-like domain CLH39_01525 PF07690 Major Facilitator Superfamily CLH39_01530 PF00440 Bacterial regulatory proteins, tetR family CLH39_01530 PF17754 MftR C-terminal domain CLH39_01535 PF00392 Bacterial regulatory proteins, gntR family CLH39_01535 PF07729 FCD domain CLH39_01560 PF00171 Aldehyde dehydrogenase family CLH39_01565 PF03928 Haem-degrading CLH39_01570 PF00175 Oxidoreductase NAD-binding domain CLH39_01570 PF00970 Oxidoreductase FAD-binding domain CLH39_01570 PF00111 2Fe-2S iron-sulfur cluster binding domain CLH39_01590 PF00175 Oxidoreductase NAD-binding domain CLH39_01590 PF00970 Oxidoreductase FAD-binding domain CLH39_01590 PF00111 2Fe-2S iron-sulfur cluster binding domain CLH39_01595 PF02423 Ornithine cyclodeaminase/mu-crystallin family CLH39_01615 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CLH39_01615 PF00753 Metallo-beta-lactamase superfamily CLH39_01615 PF10996 Beta-Casp domain CLH39_01620 PF13350 Tyrosine phosphatase family CLH39_01625 PF00155 Aminotransferase class I and II CLH39_01630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_01630 PF03466 LysR substrate binding domain CLH39_01635 PF00355 Rieske [2Fe-2S] domain CLH39_01640 PF00175 Oxidoreductase NAD-binding domain CLH39_01640 PF00970 Oxidoreductase FAD-binding domain CLH39_01640 PF00042 Globin CLH39_01645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_01645 PF03466 LysR substrate binding domain CLH39_01650 PF00043 Glutathione S-transferase, C-terminal domain CLH39_01650 PF02798 Glutathione S-transferase, N-terminal domain CLH39_01675 PF07690 Major Facilitator Superfamily CLH39_01680 PF13411 MerR HTH family regulatory protein CLH39_01690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_01690 PF03466 LysR substrate binding domain CLH39_01695 PF07690 Major Facilitator Superfamily CLH39_01710 PF07702 UTRA domain CLH39_01710 PF00392 Bacterial regulatory proteins, gntR family CLH39_01715 PF17391 Urocanase N-terminal domain CLH39_01715 PF17392 Urocanase C-terminal domain CLH39_01715 PF01175 Urocanase Rossmann-like domain CLH39_01720 PF00221 Aromatic amino acid lyase CLH39_01730 PF00145 C-5 cytosine-specific DNA methylase CLH39_01730 PF01381 Helix-turn-helix CLH39_01740 PF01979 Amidohydrolase family CLH39_01750 PF00155 Aminotransferase class I and II CLH39_01755 PF01040 UbiA prenyltransferase family CLH39_01775 PF02938 GAD domain CLH39_01775 PF01336 OB-fold nucleic acid binding domain CLH39_01775 PF00152 tRNA synthetases class II (D, K and N) CLH39_01780 PF03372 Endonuclease/Exonuclease/phosphatase family CLH39_01785 PF13091 PLD-like domain CLH39_01790 PF00107 Zinc-binding dehydrogenase CLH39_01790 PF08240 Alcohol dehydrogenase GroES-like domain CLH39_01795 PF00756 Putative esterase CLH39_01800 PF04542 Sigma-70 region 2 CLH39_01800 PF04545 Sigma-70, region 4 CLH39_01800 PF00140 Sigma-70 factor, region 1.2 CLH39_01805 PF00593 TonB dependent receptor CLH39_01805 PF07715 TonB-dependent Receptor Plug Domain CLH39_01815 PF00999 Sodium/hydrogen exchanger family CLH39_01820 PF01040 UbiA prenyltransferase family CLH39_01825 PF02628 Cytochrome oxidase assembly protein CLH39_01845 PF00510 Cytochrome c oxidase subunit III CLH39_01855 PF00115 Cytochrome C and Quinol oxidase polypeptide I CLH39_01860 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CLH39_01860 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CLH39_01875 PF14602 Hexapeptide repeat of succinyl-transferase CLH39_01875 PF00132 Bacterial transferase hexapeptide (six repeats) CLH39_01875 PF12804 MobA-like NTP transferase domain CLH39_01885 PF01037 Lrp/AsnC ligand binding domain CLH39_01890 PF01380 SIS domain CLH39_01900 PF13439 Glycosyltransferase Family 4 CLH39_01900 PF00534 Glycosyl transferases group 1 CLH39_01905 PF01050 Mannose-6-phosphate isomerase CLH39_01905 PF00483 Nucleotidyl transferase CLH39_01910 PF16363 GDP-mannose 4,6 dehydratase CLH39_01915 PF14667 Polysaccharide biosynthesis C-terminal domain CLH39_01915 PF01943 Polysaccharide biosynthesis protein CLH39_01935 PF00483 Nucleotidyl transferase CLH39_01940 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CLH39_01945 PF04321 RmlD substrate binding domain CLH39_01960 PF04542 Sigma-70 region 2 CLH39_01960 PF08281 Sigma-70, region 4 CLH39_01970 PF00593 TonB dependent receptor CLH39_01970 PF07715 TonB-dependent Receptor Plug Domain CLH39_01990 PF00465 Iron-containing alcohol dehydrogenase CLH39_02000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_02000 PF03466 LysR substrate binding domain CLH39_02005 PF13419 Haloacid dehalogenase-like hydrolase CLH39_02010 PF02954 Bacterial regulatory protein, Fis family CLH39_02010 PF00158 Sigma-54 interaction domain CLH39_02010 PF01590 GAF domain CLH39_02015 PF00743 Flavin-binding monooxygenase-like CLH39_02020 PF04972 BON domain CLH39_02025 PF05532 CsbD-like CLH39_02030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_02030 PF03466 LysR substrate binding domain CLH39_02035 PF02678 Pirin CLH39_02035 PF05726 Pirin C-terminal cupin domain CLH39_02040 PF00857 Isochorismatase family CLH39_02045 PF00857 Isochorismatase family CLH39_02050 PF05726 Pirin C-terminal cupin domain CLH39_02050 PF02678 Pirin CLH39_02065 PF08946 Osmosensory transporter coiled coil CLH39_02065 PF00083 Sugar (and other) transporter CLH39_02070 PF03466 LysR substrate binding domain CLH39_02070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_02075 PF07969 Amidohydrolase family CLH39_02090 PF00795 Carbon-nitrogen hydrolase CLH39_02100 PF13847 Methyltransferase domain CLH39_02105 PF00990 Diguanylate cyclase, GGDEF domain CLH39_02105 PF07694 5TMR of 5TMR-LYT CLH39_02110 PF00694 Aconitase C-terminal domain CLH39_02110 PF00330 Aconitase family (aconitate hydratase) CLH39_02115 PF07690 Major Facilitator Superfamily CLH39_02120 PF00248 Aldo/keto reductase family CLH39_02125 PF02548 Ketopantoate hydroxymethyltransferase CLH39_02130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_02130 PF03466 LysR substrate binding domain CLH39_02145 PF03301 Tryptophan 2,3-dioxygenase CLH39_02150 PF01037 Lrp/AsnC ligand binding domain CLH39_02150 PF13404 AsnC-type helix-turn-helix domain CLH39_02155 PF07729 FCD domain CLH39_02155 PF00392 Bacterial regulatory proteins, gntR family CLH39_02160 PF00920 Dehydratase family CLH39_02165 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CLH39_02165 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CLH39_02175 PF01370 NAD dependent epimerase/dehydratase family CLH39_02180 PF03480 Bacterial extracellular solute-binding protein, family 7 CLH39_02190 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_02200 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLH39_02200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLH39_02220 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_02225 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_02230 PF04386 Stringent starvation protein B CLH39_02235 PF00043 Glutathione S-transferase, C-terminal domain CLH39_02235 PF02798 Glutathione S-transferase, N-terminal domain CLH39_02240 PF02167 Cytochrome C1 family CLH39_02245 PF00032 Cytochrome b(C-terminal)/b6/petD CLH39_02245 PF00033 Cytochrome b/b6/petB CLH39_02250 PF00355 Rieske [2Fe-2S] domain CLH39_02250 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CLH39_02255 PF01741 Large-conductance mechanosensitive channel, MscL CLH39_02260 PF01784 NIF3 (NGG1p interacting factor 3) CLH39_02265 PF13180 PDZ domain CLH39_02270 PF00902 Sec-independent protein translocase protein (TatC) CLH39_02275 PF02416 mttA/Hcf106 family CLH39_02280 PF02416 mttA/Hcf106 family CLH39_02285 PF01230 HIT domain CLH39_02290 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CLH39_02295 PF01502 Phosphoribosyl-AMP cyclohydrolase CLH39_02300 PF00977 Histidine biosynthesis protein CLH39_02305 PF00977 Histidine biosynthesis protein CLH39_02310 PF00117 Glutamine amidotransferase class-I CLH39_02315 PF00475 Imidazoleglycerol-phosphate dehydratase CLH39_02320 PF00815 Histidinol dehydrogenase CLH39_02325 PF01634 ATP phosphoribosyltransferase CLH39_02330 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLH39_02340 PF01061 ABC-2 type transporter CLH39_02345 PF00005 ABC transporter CLH39_02360 PF02470 MlaD protein CLH39_02365 PF02405 Permease MlaE CLH39_02370 PF00005 ABC transporter CLH39_02385 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CLH39_02385 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CLH39_02385 PF00378 Enoyl-CoA hydratase/isomerase CLH39_02390 PF00108 Thiolase, N-terminal domain CLH39_02390 PF02803 Thiolase, C-terminal domain CLH39_02400 PF06715 Gp5 C-terminal repeat (3 copies) CLH39_02400 PF04717 Type VI secretion system, phage-baseplate injector CLH39_02435 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 CLH39_02440 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CLH39_02450 PF04965 Gene 25-like lysozyme CLH39_02455 PF05947 Type VI secretion system, TssF CLH39_02480 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE CLH39_02485 PF13488 Glycine zipper CLH39_02485 PF00691 OmpA family CLH39_02490 PF06761 Intracellular multiplication and human macrophage-killing CLH39_02490 PF14331 ImcF-related N-terminal domain CLH39_02490 PF06744 Type VI secretion protein IcmF C-terminal CLH39_02505 PF00892 EamA-like transporter family CLH39_02510 PF00392 Bacterial regulatory proteins, gntR family CLH39_02510 PF00155 Aminotransferase class I and II CLH39_02515 PF00892 EamA-like transporter family CLH39_02520 PF00860 Permease family CLH39_02525 PF00109 Beta-ketoacyl synthase, N-terminal domain CLH39_02525 PF16197 Ketoacyl-synthetase C-terminal extension CLH39_02525 PF00550 Phosphopantetheine attachment site CLH39_02525 PF08240 Alcohol dehydrogenase GroES-like domain CLH39_02525 PF08659 KR domain CLH39_02525 PF02801 Beta-ketoacyl synthase, C-terminal domain CLH39_02525 PF14765 Polyketide synthase dehydratase CLH39_02525 PF00698 Acyl transferase domain CLH39_02530 PF00155 Aminotransferase class I and II CLH39_02535 PF02563 Polysaccharide biosynthesis/export protein CLH39_02540 PF01061 ABC-2 type transporter CLH39_02545 PF00005 ABC transporter CLH39_02560 PF02350 UDP-N-acetylglucosamine 2-epimerase CLH39_02565 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLH39_02565 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLH39_02565 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLH39_02570 PF13477 Glycosyl transferase 4-like CLH39_02570 PF00534 Glycosyl transferases group 1 CLH39_02605 PF00106 short chain dehydrogenase CLH39_02625 PF00342 Phosphoglucose isomerase CLH39_02640 PF12679 ABC-2 family transporter protein CLH39_02645 PF00005 ABC transporter CLH39_02650 PF05048 Periplasmic copper-binding protein (NosD) CLH39_02655 PF13473 Cupredoxin-like domain CLH39_02655 PF18793 Nitrous oxide reductase propeller repeat 2 CLH39_02655 PF18764 Nitrous oxide reductase propeller repeat CLH39_02660 PF04205 FMN-binding domain CLH39_02660 PF12801 4Fe-4S binding domain CLH39_02670 PF02769 AIR synthase related protein, C-terminal domain CLH39_02670 PF00586 AIR synthase related protein, N-terminal domain CLH39_02680 PF00593 TonB dependent receptor CLH39_02680 PF07715 TonB-dependent Receptor Plug Domain CLH39_02685 PF00596 Class II Aldolase and Adducin N-terminal domain CLH39_02695 PF09106 Elongation factor SelB, winged helix CLH39_02695 PF03144 Elongation factor Tu domain 2 CLH39_02695 PF09107 Elongation factor SelB, winged helix CLH39_02695 PF00009 Elongation factor Tu GTP binding domain CLH39_02700 PF12390 Selenocysteine synthase N terminal CLH39_02700 PF03841 L-seryl-tRNA selenium transferase CLH39_02705 PF04216 Protein involved in formate dehydrogenase formation CLH39_02710 PF01292 Prokaryotic cytochrome b561 CLH39_02715 PF09163 Formate dehydrogenase N, transmembrane CLH39_02715 PF13247 4Fe-4S dicluster domain CLH39_02720 PF01568 Molydopterin dinucleotide binding domain CLH39_02720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CLH39_02720 PF00384 Molybdopterin oxidoreductase CLH39_02725 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CLH39_02725 PF01568 Molydopterin dinucleotide binding domain CLH39_02725 PF00384 Molybdopterin oxidoreductase CLH39_02750 PF00005 ABC transporter CLH39_02770 PF00795 Carbon-nitrogen hydrolase CLH39_02775 PF00083 Sugar (and other) transporter CLH39_02775 PF08946 Osmosensory transporter coiled coil CLH39_02780 PF03466 LysR substrate binding domain CLH39_02780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_02785 PF00486 Transcriptional regulatory protein, C terminal CLH39_02785 PF00072 Response regulator receiver domain CLH39_02790 PF00512 His Kinase A (phospho-acceptor) domain CLH39_02790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_02790 PF00672 HAMP domain CLH39_02805 PF01970 Tripartite tricarboxylate transporter TctA family CLH39_02810 PF05145 Transition state regulatory protein AbrB CLH39_02820 PF00080 Copper/zinc superoxide dismutase (SODC) CLH39_02825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_02825 PF03466 LysR substrate binding domain CLH39_02830 PF00795 Carbon-nitrogen hydrolase CLH39_02835 PF00474 Sodium:solute symporter family CLH39_02845 PF08281 Sigma-70, region 4 CLH39_02845 PF04542 Sigma-70 region 2 CLH39_02855 PF07715 TonB-dependent Receptor Plug Domain CLH39_02855 PF00593 TonB dependent receptor CLH39_02855 PF07660 Secretin and TonB N terminus short domain CLH39_02865 PF00398 Ribosomal RNA adenine dimethylase CLH39_02875 PF01618 MotA/TolQ/ExbB proton channel family CLH39_02880 PF02472 Biopolymer transport protein ExbD/TolR CLH39_02950 PF13657 HipA N-terminal domain CLH39_02950 PF07804 HipA-like C-terminal domain CLH39_02960 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CLH39_02960 PF01488 Shikimate / quinate 5-dehydrogenase CLH39_02960 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CLH39_02965 PF00472 RF-1 domain CLH39_02965 PF03462 PCRF domain CLH39_02970 PF05175 Methyltransferase small domain CLH39_02970 PF17827 PrmC N-terminal domain CLH39_02975 PF00462 Glutaredoxin CLH39_02980 PF02441 Flavoprotein CLH39_02985 PF01171 PP-loop family CLH39_03000 PF00378 Enoyl-CoA hydratase/isomerase CLH39_03010 PF00119 ATP synthase A chain CLH39_03015 PF00137 ATP synthase subunit C CLH39_03020 PF00430 ATP synthase B/B' CF(0) CLH39_03025 PF00213 ATP synthase delta (OSCP) subunit CLH39_03030 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLH39_03030 PF00306 ATP synthase alpha/beta chain, C terminal domain CLH39_03030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLH39_03035 PF00231 ATP synthase CLH39_03040 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLH39_03040 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLH39_03045 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CLH39_03055 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_03060 PF00005 ABC transporter CLH39_03065 PF03328 HpcH/HpaI aldolase/citrate lyase family CLH39_03070 PF03466 LysR substrate binding domain CLH39_03070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_03075 PF17645 Arylmalonate decarboxylase CLH39_03080 PF16363 GDP-mannose 4,6 dehydratase CLH39_03085 PF00132 Bacterial transferase hexapeptide (six repeats) CLH39_03095 PF04055 Radical SAM superfamily CLH39_03095 PF18693 TRAM domain CLH39_03095 PF00919 Uncharacterized protein family UPF0004 CLH39_03100 PF01029 NusB family CLH39_03100 PF01189 16S rRNA methyltransferase RsmB/F CLH39_03110 PF00672 HAMP domain CLH39_03110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_03115 PF00158 Sigma-54 interaction domain CLH39_03115 PF00072 Response regulator receiver domain CLH39_03115 PF02954 Bacterial regulatory protein, Fis family CLH39_03120 PF00885 6,7-dimethyl-8-ribityllumazine synthase CLH39_03125 PF00672 HAMP domain CLH39_03125 PF00512 His Kinase A (phospho-acceptor) domain CLH39_03125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_03130 PF00486 Transcriptional regulatory protein, C terminal CLH39_03130 PF00072 Response regulator receiver domain CLH39_03135 PF00593 TonB dependent receptor CLH39_03135 PF07715 TonB-dependent Receptor Plug Domain CLH39_03140 PF08241 Methyltransferase domain CLH39_03145 PF00156 Phosphoribosyl transferase domain CLH39_03150 PF00588 SpoU rRNA Methylase family CLH39_03155 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_03160 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CLH39_03160 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CLH39_03165 PF02556 Preprotein translocase subunit SecB CLH39_03170 PF00462 Glutaredoxin CLH39_03175 PF00581 Rhodanese-like domain CLH39_03180 PF00300 Histidine phosphatase superfamily (branch 1) CLH39_03185 PF01551 Peptidase family M23 CLH39_03190 PF13180 PDZ domain CLH39_03190 PF03572 Peptidase family S41 CLH39_03195 PF00899 ThiF family CLH39_03200 PF12833 Helix-turn-helix domain CLH39_03205 PF00171 Aldehyde dehydrogenase family CLH39_03215 PF00696 Amino acid kinase family CLH39_03220 PF00578 AhpC/TSA family CLH39_03230 PF13580 SIS domain CLH39_03235 PF02021 Uncharacterised protein family UPF0102 CLH39_03240 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLH39_03245 PF05036 Sporulation related domain CLH39_03245 PF03330 Lytic transglycolase CLH39_03250 PF03668 P-loop ATPase protein family CLH39_03255 PF02603 HPr Serine kinase N terminus CLH39_03255 PF07475 HPr Serine kinase C-terminal domain CLH39_03260 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLH39_03265 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CLH39_03270 PF00005 ABC transporter CLH39_03290 PF01380 SIS domain CLH39_03290 PF00571 CBS domain CLH39_03300 PF01654 Cytochrome bd terminal oxidase subunit I CLH39_03305 PF02322 Cytochrome bd terminal oxidase subunit II CLH39_03310 PF08173 Membrane bound YbgT-like protein CLH39_03315 PF00005 ABC transporter CLH39_03315 PF00664 ABC transporter transmembrane region CLH39_03320 PF00664 ABC transporter transmembrane region CLH39_03320 PF00005 ABC transporter CLH39_03325 PF00156 Phosphoribosyl transferase domain CLH39_03335 PF03797 Autotransporter beta-domain CLH39_03335 PF00082 Subtilase family CLH39_03345 PF00082 Subtilase family CLH39_03345 PF03797 Autotransporter beta-domain CLH39_03360 PF09335 SNARE associated Golgi protein CLH39_03365 PF00291 Pyridoxal-phosphate dependent enzyme CLH39_03365 PF00585 C-terminal regulatory domain of Threonine dehydratase CLH39_03370 PF02626 Carboxyltransferase domain, subdomain A and B CLH39_03375 PF02682 Carboxyltransferase domain, subdomain C and D CLH39_03385 PF00512 His Kinase A (phospho-acceptor) domain CLH39_03385 PF00989 PAS fold CLH39_03385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_03385 PF11808 Phosphate regulon sensor protein PhoR CLH39_03390 PF00486 Transcriptional regulatory protein, C terminal CLH39_03390 PF00072 Response regulator receiver domain CLH39_03395 PF01209 ubiE/COQ5 methyltransferase family CLH39_03410 PF03109 ABC1 family CLH39_03420 PF01467 Cytidylyltransferase-like CLH39_03425 PF02321 Outer membrane efflux protein CLH39_03435 PF01048 Phosphorylase superfamily CLH39_03440 PF08543 Phosphomethylpyrimidine kinase CLH39_03445 PF05690 Thiazole biosynthesis protein ThiG CLH39_03460 PF01544 CorA-like Mg2+ transporter protein CLH39_03470 PF01544 CorA-like Mg2+ transporter protein CLH39_03480 PF13609 Gram-negative porin CLH39_03495 PF04542 Sigma-70 region 2 CLH39_03495 PF08281 Sigma-70, region 4 CLH39_03505 PF07715 TonB-dependent Receptor Plug Domain CLH39_03505 PF07660 Secretin and TonB N terminus short domain CLH39_03505 PF00593 TonB dependent receptor CLH39_03510 PF01497 Periplasmic binding protein CLH39_03515 PF00593 TonB dependent receptor CLH39_03515 PF07715 TonB-dependent Receptor Plug Domain CLH39_03520 PF02607 B12 binding domain CLH39_03520 PF02965 Vitamin B12 dependent methionine synthase, activation domain CLH39_03520 PF02574 Homocysteine S-methyltransferase CLH39_03520 PF00809 Pterin binding enzyme CLH39_03520 PF02310 B12 binding domain CLH39_03530 PF07690 Major Facilitator Superfamily CLH39_03540 PF02616 Segregation and condensation protein ScpA CLH39_03545 PF02569 Pantoate-beta-alanine ligase CLH39_03550 PF00072 Response regulator receiver domain CLH39_03550 PF00196 Bacterial regulatory proteins, luxR family CLH39_03560 PF01121 Dephospho-CoA kinase CLH39_03565 PF07072 Cell division protein CLH39_03570 PF13533 Biotin-lipoyl like CLH39_03575 PF00873 AcrB/AcrD/AcrF family CLH39_03580 PF00873 AcrB/AcrD/AcrF family CLH39_03585 PF02321 Outer membrane efflux protein CLH39_03590 PF17284 Spermidine synthase tetramerisation domain CLH39_03595 PF00293 NUDIX domain CLH39_03605 PF00348 Polyprenyl synthetase CLH39_03610 PF03616 Sodium/glutamate symporter CLH39_03625 PF00158 Sigma-54 interaction domain CLH39_03625 PF02954 Bacterial regulatory protein, Fis family CLH39_03630 PF00115 Cytochrome C and Quinol oxidase polypeptide I CLH39_03635 PF07732 Multicopper oxidase CLH39_03635 PF00394 Multicopper oxidase CLH39_03650 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CLH39_03655 PF07681 DoxX CLH39_03660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_03660 PF03466 LysR substrate binding domain CLH39_03665 PF00156 Phosphoribosyl transferase domain CLH39_03670 PF02637 GatB domain CLH39_03670 PF02934 GatB/GatE catalytic domain CLH39_03675 PF01425 Amidase CLH39_03680 PF02686 Glu-tRNAGln amidotransferase C subunit CLH39_03690 PF04085 rod shape-determining protein MreC CLH39_03700 PF00905 Penicillin binding protein transpeptidase domain CLH39_03700 PF03717 Penicillin-binding Protein dimerisation domain CLH39_03705 PF01098 Cell cycle protein CLH39_03710 PF14815 NUDIX domain CLH39_03710 PF00633 Helix-hairpin-helix motif CLH39_03710 PF00730 HhH-GPD superfamily base excision DNA repair protein CLH39_03715 PF18075 FtsX extracellular domain CLH39_03720 PF00005 ABC transporter CLH39_03730 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLH39_03735 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_03740 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_03745 PF00005 ABC transporter CLH39_03750 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_03755 PF00691 OmpA family CLH39_03755 PF05736 OprF membrane domain CLH39_03765 PF01964 Radical SAM ThiC family CLH39_03765 PF13667 ThiC-associated domain CLH39_03785 PF01266 FAD dependent oxidoreductase CLH39_03790 PF01472 PUA domain CLH39_03790 PF00696 Amino acid kinase family CLH39_03795 PF01018 GTP1/OBG CLH39_03795 PF01926 50S ribosome-binding GTPase CLH39_03800 PF01016 Ribosomal L27 protein CLH39_03805 PF00829 Ribosomal prokaryotic L21 protein CLH39_03810 PF05532 CsbD-like CLH39_03820 PF01960 ArgJ family CLH39_03830 PF00501 AMP-binding enzyme CLH39_03830 PF13193 AMP-binding enzyme C-terminal domain CLH39_03835 PF00202 Aminotransferase class-III CLH39_03840 PF02581 Thiamine monophosphate synthase CLH39_03850 PF00301 Rubredoxin CLH39_03855 PF02622 Uncharacterized ACR, COG1678 CLH39_03860 PF03652 Holliday junction resolvase CLH39_03865 PF01553 Acyltransferase CLH39_03870 PF00149 Calcineurin-like phosphoesterase CLH39_03880 PF00912 Transglycosylase CLH39_03885 PF08501 Shikimate dehydrogenase substrate binding domain CLH39_03885 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CLH39_03885 PF01488 Shikimate / quinate 5-dehydrogenase CLH39_03900 PF05728 Uncharacterised protein family (UPF0227) CLH39_03905 PF01225 Mur ligase family, catalytic domain CLH39_03905 PF02875 Mur ligase family, glutamate ligase domain CLH39_03905 PF08245 Mur ligase middle domain CLH39_03910 PF00578 AhpC/TSA family CLH39_03915 PF01220 Dehydroquinase class II CLH39_03920 PF00364 Biotin-requiring enzyme CLH39_03925 PF00289 Biotin carboxylase, N-terminal domain CLH39_03925 PF02785 Biotin carboxylase C-terminal domain CLH39_03925 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLH39_03940 PF00294 pfkB family carbohydrate kinase CLH39_03945 PF05433 Glycine zipper 2TM domain CLH39_03950 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CLH39_03950 PF12833 Helix-turn-helix domain CLH39_03950 PF02805 Metal binding domain of Ada CLH39_03950 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CLH39_03955 PF02325 YGGT family CLH39_03970 PF01037 Lrp/AsnC ligand binding domain CLH39_03980 PF07152 YaeQ protein CLH39_03985 PF00749 tRNA synthetases class I (E and Q), catalytic domain CLH39_03990 PF00196 Bacterial regulatory proteins, luxR family CLH39_03990 PF00072 Response regulator receiver domain CLH39_03995 PF13426 PAS domain CLH39_03995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_03995 PF08448 PAS fold CLH39_03995 PF00072 Response regulator receiver domain CLH39_03995 PF00512 His Kinase A (phospho-acceptor) domain CLH39_04000 PF00689 Cation transporting ATPase, C-terminus CLH39_04000 PF00690 Cation transporter/ATPase, N-terminus CLH39_04025 PF04751 Protein of unknown function (DUF615) CLH39_04030 PF01523 Putative modulator of DNA gyrase CLH39_04035 PF03480 Bacterial extracellular solute-binding protein, family 7 CLH39_04040 PF00572 Ribosomal protein L13 CLH39_04045 PF00380 Ribosomal protein S9/S16 CLH39_04050 PF02774 Semialdehyde dehydrogenase, dimerisation domain CLH39_04050 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLH39_04060 PF01521 Iron-sulphur cluster biosynthesis CLH39_04065 PF03702 Anhydro-N-acetylmuramic acid kinase CLH39_04070 PF04225 Opacity-associated protein A LysM-like domain CLH39_04070 PF01551 Peptidase family M23 CLH39_04075 PF00579 tRNA synthetases class I (W and Y) CLH39_04075 PF01479 S4 domain CLH39_04080 PF01161 Phosphatidylethanolamine-binding protein CLH39_04085 PF00464 Serine hydroxymethyltransferase CLH39_04090 PF03477 ATP cone domain CLH39_04095 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLH39_04095 PF01872 RibD C-terminal domain CLH39_04105 PF12833 Helix-turn-helix domain CLH39_04105 PF01965 DJ-1/PfpI family CLH39_04120 PF01053 Cys/Met metabolism PLP-dependent enzyme CLH39_04135 PF08521 Two-component sensor kinase N-terminal CLH39_04135 PF00512 His Kinase A (phospho-acceptor) domain CLH39_04135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_04140 PF00072 Response regulator receiver domain CLH39_04140 PF00486 Transcriptional regulatory protein, C terminal CLH39_04145 PF03358 NADPH-dependent FMN reductase CLH39_04150 PF03960 ArsC family CLH39_04155 PF02040 Arsenical pump membrane protein CLH39_04165 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLH39_04170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_04170 PF03466 LysR substrate binding domain CLH39_04175 PF01810 LysE type translocator CLH39_04185 PF00501 AMP-binding enzyme CLH39_04185 PF13193 AMP-binding enzyme C-terminal domain CLH39_04200 PF14863 Alkyl sulfatase dimerisation CLH39_04200 PF00753 Metallo-beta-lactamase superfamily CLH39_04200 PF14864 Alkyl sulfatase C-terminal CLH39_04220 PF00378 Enoyl-CoA hydratase/isomerase CLH39_04225 PF02515 CoA-transferase family III CLH39_04230 PF00107 Zinc-binding dehydrogenase CLH39_04230 PF08240 Alcohol dehydrogenase GroES-like domain CLH39_04235 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_04240 PF13607 Succinyl-CoA ligase like flavodoxin domain CLH39_04240 PF13380 CoA binding domain CLH39_04245 PF00378 Enoyl-CoA hydratase/isomerase CLH39_04250 PF05995 Cysteine dioxygenase type I CLH39_04265 PF02358 Trehalose-phosphatase CLH39_04285 PF00982 Glycosyltransferase family 20 CLH39_04290 PF04552 Sigma-54, DNA binding domain CLH39_04290 PF00309 Sigma-54 factor, Activator interacting domain (AID) CLH39_04290 PF04963 Sigma-54 factor, core binding domain CLH39_04300 PF06505 Activator of aromatic catabolism CLH39_04300 PF02830 V4R domain CLH39_04300 PF00158 Sigma-54 interaction domain CLH39_04300 PF02954 Bacterial regulatory protein, Fis family CLH39_04305 PF02954 Bacterial regulatory protein, Fis family CLH39_04305 PF01590 GAF domain CLH39_04305 PF00158 Sigma-54 interaction domain CLH39_04310 PF04073 Aminoacyl-tRNA editing domain CLH39_04335 PF17773 UPF0176 acylphosphatase like domain CLH39_04335 PF00581 Rhodanese-like domain CLH39_04345 PF00375 Sodium:dicarboxylate symporter family CLH39_04350 PF00512 His Kinase A (phospho-acceptor) domain CLH39_04350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_04350 PF02743 Cache domain CLH39_04355 PF02954 Bacterial regulatory protein, Fis family CLH39_04355 PF00072 Response regulator receiver domain CLH39_04355 PF00158 Sigma-54 interaction domain CLH39_04360 PF01047 MarR family CLH39_04370 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLH39_04370 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLH39_04375 PF01799 [2Fe-2S] binding domain CLH39_04375 PF00111 2Fe-2S iron-sulfur cluster binding domain CLH39_04380 PF03450 CO dehydrogenase flavoprotein C-terminal domain CLH39_04380 PF00941 FAD binding domain in molybdopterin dehydrogenase CLH39_04385 PF09084 NMT1/THI5 like CLH39_04390 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_04400 PF01464 Transglycosylase SLT domain CLH39_04400 PF01476 LysM domain CLH39_04405 PF00753 Metallo-beta-lactamase superfamily CLH39_04405 PF16123 Hydroxyacylglutathione hydrolase C-terminus CLH39_04410 PF08241 Methyltransferase domain CLH39_04415 PF00075 RNase H CLH39_04420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLH39_04425 PF00873 AcrB/AcrD/AcrF family CLH39_04430 PF00929 Exonuclease CLH39_04440 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_04445 PF01979 Amidohydrolase family CLH39_04450 PF03466 LysR substrate binding domain CLH39_04450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_04455 PF02667 Short chain fatty acid transporter CLH39_04460 PF07715 TonB-dependent Receptor Plug Domain CLH39_04460 PF00593 TonB dependent receptor CLH39_04470 PF01032 FecCD transport family CLH39_04475 PF00005 ABC transporter CLH39_04480 PF01047 MarR family CLH39_04490 PF00561 alpha/beta hydrolase fold CLH39_04500 PF00857 Isochorismatase family CLH39_04510 PF00355 Rieske [2Fe-2S] domain CLH39_04510 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CLH39_04515 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLH39_04515 PF14759 Reductase C-terminal CLH39_04520 PF00355 Rieske [2Fe-2S] domain CLH39_04525 PF03480 Bacterial extracellular solute-binding protein, family 7 CLH39_04530 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLH39_04530 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLH39_04535 PF00941 FAD binding domain in molybdopterin dehydrogenase CLH39_04535 PF03450 CO dehydrogenase flavoprotein C-terminal domain CLH39_04540 PF00111 2Fe-2S iron-sulfur cluster binding domain CLH39_04540 PF01799 [2Fe-2S] binding domain CLH39_04550 PF00005 ABC transporter CLH39_04555 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_04565 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_04570 PF13478 XdhC Rossmann domain CLH39_04570 PF02625 XdhC and CoxI family CLH39_04575 PF03853 YjeF-related protein N-terminus CLH39_04575 PF01256 Carbohydrate kinase CLH39_04585 PF13091 PLD-like domain CLH39_04595 PF00392 Bacterial regulatory proteins, gntR family CLH39_04595 PF07702 UTRA domain CLH39_04600 PF00753 Metallo-beta-lactamase superfamily CLH39_04600 PF12706 Beta-lactamase superfamily domain CLH39_04610 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_04615 PF00884 Sulfatase CLH39_04615 PF16347 Domain of unknown function (DUF4976) CLH39_04620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_04620 PF03466 LysR substrate binding domain CLH39_04625 PF00990 Diguanylate cyclase, GGDEF domain CLH39_04625 PF17158 Membrane-associated sensor, integral membrane domain CLH39_04630 PF01804 Penicillin amidase CLH39_04640 PF13458 Periplasmic binding protein CLH39_04650 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLH39_04650 PF00005 ABC transporter CLH39_04655 PF00005 ABC transporter CLH39_04665 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLH39_04665 PF00034 Cytochrome c CLH39_04665 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLH39_04670 PF00111 2Fe-2S iron-sulfur cluster binding domain CLH39_04670 PF01799 [2Fe-2S] binding domain CLH39_04675 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLH39_04675 PF00034 Cytochrome c CLH39_04675 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLH39_04680 PF00561 alpha/beta hydrolase fold CLH39_04690 PF00857 Isochorismatase family CLH39_04715 PF07317 Flagellar regulator YcgR CLH39_04715 PF07238 PilZ domain CLH39_04720 PF02423 Ornithine cyclodeaminase/mu-crystallin family CLH39_04730 PF01053 Cys/Met metabolism PLP-dependent enzyme CLH39_04745 PF00037 4Fe-4S binding domain CLH39_04750 PF01467 Cytidylyltransferase-like CLH39_04760 PF02881 SRP54-type protein, helical bundle domain CLH39_04760 PF00448 SRP54-type protein, GTPase domain CLH39_04775 PF00925 GTP cyclohydrolase II CLH39_04775 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CLH39_04780 PF00885 6,7-dimethyl-8-ribityllumazine synthase CLH39_04785 PF01029 NusB family CLH39_04790 PF00586 AIR synthase related protein, N-terminal domain CLH39_04790 PF02769 AIR synthase related protein, C-terminal domain CLH39_04795 PF04608 Phosphatidylglycerophosphatase A CLH39_04800 PF02464 Competence-damaged protein CLH39_04805 PF09339 IclR helix-turn-helix domain CLH39_04805 PF01614 Bacterial transcriptional regulator CLH39_04810 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_04815 PF02515 CoA-transferase family III CLH39_04820 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CLH39_04825 PF01219 Prokaryotic diacylglycerol kinase CLH39_04830 PF00118 TCP-1/cpn60 chaperonin family CLH39_04835 PF00166 Chaperonin 10 Kd subunit CLH39_04840 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase CLH39_04850 PF01425 Amidase CLH39_04855 PF00990 Diguanylate cyclase, GGDEF domain CLH39_04855 PF17158 Membrane-associated sensor, integral membrane domain CLH39_04865 PF02678 Pirin CLH39_04865 PF17954 Quercetinase C-terminal cupin domain CLH39_04870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_04870 PF03466 LysR substrate binding domain CLH39_04880 PF01515 Phosphate acetyl/butaryl transferase CLH39_04885 PF00871 Acetokinase family CLH39_04890 PF00009 Elongation factor Tu GTP binding domain CLH39_04900 PF00892 EamA-like transporter family CLH39_04905 PF00155 Aminotransferase class I and II CLH39_04910 PF10417 C-terminal domain of 1-Cys peroxiredoxin CLH39_04910 PF00578 AhpC/TSA family CLH39_04915 PF13192 Thioredoxin domain CLH39_04915 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLH39_04920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_04920 PF03466 LysR substrate binding domain CLH39_04925 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CLH39_04925 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CLH39_04930 PF01810 LysE type translocator CLH39_04935 PF01113 Dihydrodipicolinate reductase, N-terminus CLH39_04935 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain CLH39_04945 PF00005 ABC transporter CLH39_04950 PF02653 Branched-chain amino acid transport system / permease component CLH39_04955 PF02653 Branched-chain amino acid transport system / permease component CLH39_04960 PF02608 ABC transporter substrate-binding protein PnrA-like CLH39_04965 PF01554 MatE CLH39_04980 PF00561 alpha/beta hydrolase fold CLH39_04990 PF00691 OmpA family CLH39_04995 PF07676 WD40-like Beta Propeller Repeat CLH39_04995 PF04052 TolB amino-terminal domain CLH39_05005 PF02472 Biopolymer transport protein ExbD/TolR CLH39_05010 PF01618 MotA/TolQ/ExbB proton channel family CLH39_05015 PF03061 Thioesterase superfamily CLH39_05020 PF04073 Aminoacyl-tRNA editing domain CLH39_05020 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLH39_05020 PF03129 Anticodon binding domain CLH39_05025 PF00293 NUDIX domain CLH39_05030 PF00486 Transcriptional regulatory protein, C terminal CLH39_05030 PF00072 Response regulator receiver domain CLH39_05035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_05035 PF00512 His Kinase A (phospho-acceptor) domain CLH39_05040 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CLH39_05040 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CLH39_05045 PF13416 Bacterial extracellular solute-binding protein CLH39_05050 PF08402 TOBE domain CLH39_05050 PF00005 ABC transporter CLH39_05055 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_05060 PF01266 FAD dependent oxidoreductase CLH39_05060 PF01571 Aminomethyltransferase folate-binding domain CLH39_05060 PF16350 FAD dependent oxidoreductase central domain CLH39_05060 PF08669 Glycine cleavage T-protein C-terminal barrel domain CLH39_05065 PF01970 Tripartite tricarboxylate transporter TctA family CLH39_05090 PF01790 Prolipoprotein diacylglyceryl transferase CLH39_05095 PF00034 Cytochrome c CLH39_05100 PF01625 Peptide methionine sulfoxide reductase CLH39_05110 PF04143 Sulphur transport CLH39_05115 PF00581 Rhodanese-like domain CLH39_05165 PF03441 FAD binding domain of DNA photolyase CLH39_05165 PF00875 DNA photolyase CLH39_05175 PF01979 Amidohydrolase family CLH39_05185 PF05496 Holliday junction DNA helicase RuvB P-loop domain CLH39_05185 PF05491 RuvB C-terminal winged helix domain CLH39_05185 PF17864 RuvB AAA lid domain CLH39_05190 PF00291 Pyridoxal-phosphate dependent enzyme CLH39_05195 PF07499 RuvA, C-terminal domain CLH39_05195 PF01330 RuvA N terminal domain CLH39_05200 PF02075 Crossover junction endodeoxyribonuclease RuvC CLH39_05205 PF01808 AICARFT/IMPCHase bienzyme CLH39_05205 PF02142 MGS-like domain CLH39_05210 PF02954 Bacterial regulatory protein, Fis family CLH39_05215 PF01207 Dihydrouridine synthase (Dus) CLH39_05220 PF01494 FAD binding domain CLH39_05240 PF01435 Peptidase family M48 CLH39_05245 PF00561 alpha/beta hydrolase fold CLH39_05265 PF00270 DEAD/DEAH box helicase CLH39_05265 PF00271 Helicase conserved C-terminal domain CLH39_05285 PF01614 Bacterial transcriptional regulator CLH39_05285 PF09339 IclR helix-turn-helix domain CLH39_05300 PF01180 Dihydroorotate dehydrogenase CLH39_05305 PF04377 Arginine-tRNA-protein transferase, C terminus CLH39_05305 PF04376 Arginine-tRNA-protein transferase, N terminus CLH39_05310 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CLH39_05325 PF01047 MarR family CLH39_05330 PF00206 Lyase CLH39_05330 PF10415 Fumarase C C-terminus CLH39_05340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLH39_05345 PF00478 IMP dehydrogenase / GMP reductase domain CLH39_05345 PF00571 CBS domain CLH39_05355 PF07963 Prokaryotic N-terminal methylation motif CLH39_05355 PF08334 Type II secretion system (T2SS), protein G CLH39_05360 PF07963 Prokaryotic N-terminal methylation motif CLH39_05365 PF02501 Type II secretion system (T2SS), protein I CLH39_05365 PF07963 Prokaryotic N-terminal methylation motif CLH39_05370 PF07963 Prokaryotic N-terminal methylation motif CLH39_05370 PF11612 Type II secretion system (T2SS), protein J CLH39_05395 PF03958 Bacterial type II/III secretion system short domain CLH39_05395 PF00263 Bacterial type II and III secretion system protein CLH39_05400 PF00437 Type II/IV secretion system protein CLH39_05405 PF00482 Type II secretion system (T2SS), protein F CLH39_05410 PF02796 Helix-turn-helix domain of resolvase CLH39_05410 PF00239 Resolvase, N terminal domain CLH39_05420 PF13018 Extended Signal Peptide of Type V secretion system CLH39_05420 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin CLH39_05420 PF03895 YadA-like membrane anchor domain CLH39_05420 PF05662 Coiled stalk of trimeric autotransporter adhesin CLH39_05425 PF00691 OmpA family CLH39_05425 PF01389 OmpA-like transmembrane domain CLH39_05440 PF05506 Domain of unknown function (DUF756) CLH39_05440 PF04185 Phosphoesterase family CLH39_05455 PF01177 Asp/Glu/Hydantoin racemase CLH39_05460 PF00202 Aminotransferase class-III CLH39_05465 PF03466 LysR substrate binding domain CLH39_05465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_05475 PF00155 Aminotransferase class I and II CLH39_05475 PF00392 Bacterial regulatory proteins, gntR family CLH39_05480 PF00115 Cytochrome C and Quinol oxidase polypeptide I CLH39_05495 PF00892 EamA-like transporter family CLH39_05525 PF00873 AcrB/AcrD/AcrF family CLH39_05540 PF09278 MerR, DNA binding CLH39_05540 PF00376 MerR family regulatory protein CLH39_05545 PF02028 BCCT, betaine/carnitine/choline family transporter CLH39_05550 PF08543 Phosphomethylpyrimidine kinase CLH39_05555 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CLH39_05555 PF00117 Glutamine amidotransferase class-I CLH39_05570 PF00464 Serine hydroxymethyltransferase CLH39_05575 PF00392 Bacterial regulatory proteins, gntR family CLH39_05575 PF00155 Aminotransferase class I and II CLH39_05580 PF00266 Aminotransferase class-V CLH39_05585 PF00464 Serine hydroxymethyltransferase CLH39_05595 PF06508 Queuosine biosynthesis protein QueC CLH39_05600 PF02592 Putative vitamin uptake transporter CLH39_05610 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CLH39_05610 PF00561 alpha/beta hydrolase fold CLH39_05615 PF02321 Outer membrane efflux protein CLH39_05620 PF13533 Biotin-lipoyl like CLH39_05625 PF00005 ABC transporter CLH39_05640 PF00106 short chain dehydrogenase CLH39_05645 PF00108 Thiolase, N-terminal domain CLH39_05645 PF02803 Thiolase, C-terminal domain CLH39_05650 PF11339 Protein of unknown function (DUF3141) CLH39_05675 PF07690 Major Facilitator Superfamily CLH39_05680 PF00155 Aminotransferase class I and II CLH39_05680 PF00392 Bacterial regulatory proteins, gntR family CLH39_05685 PF01425 Amidase CLH39_05705 PF00072 Response regulator receiver domain CLH39_05705 PF00196 Bacterial regulatory proteins, luxR family CLH39_05710 PF00072 Response regulator receiver domain CLH39_05710 PF09456 RcsC Alpha-Beta-Loop (ABL) CLH39_05710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_05710 PF00512 His Kinase A (phospho-acceptor) domain CLH39_05715 PF00512 His Kinase A (phospho-acceptor) domain CLH39_05715 PF00072 Response regulator receiver domain CLH39_05715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_05715 PF09456 RcsC Alpha-Beta-Loop (ABL) CLH39_05720 PF00577 Outer membrane usher protein CLH39_05720 PF13953 PapC C-terminal domain CLH39_05720 PF13954 PapC N-terminal domain CLH39_05725 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CLH39_05725 PF02753 Pili assembly chaperone PapD, C-terminal domain CLH39_05745 PF07690 Major Facilitator Superfamily CLH39_05750 PF00682 HMGL-like CLH39_05750 PF07836 DmpG-like communication domain CLH39_05755 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CLH39_05755 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLH39_05760 PF01557 Fumarylacetoacetate (FAA) hydrolase family CLH39_05765 PF12697 Alpha/beta hydrolase family CLH39_05770 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CLH39_05775 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLH39_05775 PF14759 Reductase C-terminal CLH39_05780 PF00106 short chain dehydrogenase CLH39_05785 PF00355 Rieske [2Fe-2S] domain CLH39_05790 PF00866 Ring hydroxylating beta subunit CLH39_05795 PF00355 Rieske [2Fe-2S] domain CLH39_05795 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CLH39_05800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_05800 PF03466 LysR substrate binding domain CLH39_05810 PF00271 Helicase conserved C-terminal domain CLH39_05810 PF00270 DEAD/DEAH box helicase CLH39_05810 PF03880 DbpA RNA binding domain CLH39_05815 PF01614 Bacterial transcriptional regulator CLH39_05815 PF09339 IclR helix-turn-helix domain CLH39_05820 PF00171 Aldehyde dehydrogenase family CLH39_05830 PF02653 Branched-chain amino acid transport system / permease component CLH39_05840 PF00005 ABC transporter CLH39_05845 PF00005 ABC transporter CLH39_05850 PF00465 Iron-containing alcohol dehydrogenase CLH39_05865 PF13687 Domain of unknown function (DUF4153) CLH39_05870 PF00756 Putative esterase CLH39_05875 PF04216 Protein involved in formate dehydrogenase formation CLH39_05880 PF01292 Prokaryotic cytochrome b561 CLH39_05885 PF09163 Formate dehydrogenase N, transmembrane CLH39_05885 PF12800 4Fe-4S binding domain CLH39_05885 PF13247 4Fe-4S dicluster domain CLH39_05890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CLH39_05890 PF01568 Molydopterin dinucleotide binding domain CLH39_05890 PF00384 Molybdopterin oxidoreductase CLH39_05900 PF07690 Major Facilitator Superfamily CLH39_05905 PF07660 Secretin and TonB N terminus short domain CLH39_05905 PF00593 TonB dependent receptor CLH39_05905 PF07715 TonB-dependent Receptor Plug Domain CLH39_05920 PF07690 Major Facilitator Superfamily CLH39_05940 PF13533 Biotin-lipoyl like CLH39_05945 PF02321 Outer membrane efflux protein CLH39_05970 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CLH39_05970 PF01565 FAD binding domain CLH39_05980 PF00375 Sodium:dicarboxylate symporter family CLH39_05985 PF07690 Major Facilitator Superfamily CLH39_05990 PF00465 Iron-containing alcohol dehydrogenase CLH39_05995 PF00561 alpha/beta hydrolase fold CLH39_06010 PF01113 Dihydrodipicolinate reductase, N-terminus CLH39_06010 PF05173 Dihydrodipicolinate reductase, C-terminus CLH39_06015 PF04355 SmpA / OmlA family CLH39_06020 PF01475 Ferric uptake regulator family CLH39_06025 PF02463 RecF/RecN/SMC N terminal domain CLH39_06030 PF01513 ATP-NAD kinase CLH39_06035 PF01628 HrcA protein C terminal domain CLH39_06035 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CLH39_06040 PF00762 Ferrochelatase CLH39_06045 PF01025 GrpE CLH39_06050 PF00012 Hsp70 protein CLH39_06055 PF01556 DnaJ C terminal domain CLH39_06055 PF00684 DnaJ central domain CLH39_06055 PF00226 DnaJ domain CLH39_06060 PF05193 Peptidase M16 inactive domain CLH39_06060 PF00675 Insulinase (Peptidase family M16) CLH39_06090 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CLH39_06090 PF08479 POTRA domain, ShlB-type CLH39_06120 PF04972 BON domain CLH39_06120 PF00263 Bacterial type II and III secretion system protein CLH39_06120 PF13629 Pilus formation protein N terminal region CLH39_06130 PF00437 Type II/IV secretion system protein CLH39_06160 PF00072 Response regulator receiver domain CLH39_06160 PF00158 Sigma-54 interaction domain CLH39_06160 PF02954 Bacterial regulatory protein, Fis family CLH39_06180 PF01434 Peptidase family M41 CLH39_06180 PF17862 AAA+ lid domain CLH39_06180 PF00004 ATPase family associated with various cellular activities (AAA) CLH39_06185 PF00034 Cytochrome c CLH39_06200 PF00180 Isocitrate/isopropylmalate dehydrogenase CLH39_06205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLH39_06205 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CLH39_06210 PF00135 Carboxylesterase family CLH39_06230 PF07690 Major Facilitator Superfamily CLH39_06250 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLH39_06255 PF01580 FtsK/SpoIIIE family CLH39_06255 PF09397 Ftsk gamma domain CLH39_06255 PF17854 FtsK alpha domain CLH39_06255 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CLH39_06260 PF03548 Outer membrane lipoprotein carrier protein LolA CLH39_06265 PF12002 MgsA AAA+ ATPase C terminal CLH39_06265 PF16193 AAA C-terminal domain CLH39_06265 PF00004 ATPase family associated with various cellular activities (AAA) CLH39_06270 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLH39_06270 PF02403 Seryl-tRNA synthetase N-terminal domain CLH39_06295 PF03883 Peroxide stress protein YaaA CLH39_06300 PF12805 FUSC-like inner membrane protein yccS CLH39_06305 PF00205 Thiamine pyrophosphate enzyme, central domain CLH39_06305 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLH39_06305 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLH39_06310 PF10369 Small subunit of acetolactate synthase CLH39_06315 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CLH39_06315 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CLH39_06320 PF01066 CDP-alcohol phosphatidyltransferase CLH39_06325 PF00312 Ribosomal protein S15 CLH39_06330 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CLH39_06330 PF00013 KH domain CLH39_06330 PF00575 S1 RNA binding domain CLH39_06330 PF03725 3' exoribonuclease family, domain 2 CLH39_06330 PF01138 3' exoribonuclease family, domain 1 CLH39_06335 PF07969 Amidohydrolase family CLH39_06350 PF00107 Zinc-binding dehydrogenase CLH39_06350 PF08240 Alcohol dehydrogenase GroES-like domain CLH39_06355 PF00121 Triosephosphate isomerase CLH39_06360 PF03840 Preprotein translocase SecG subunit CLH39_06370 PF13609 Gram-negative porin CLH39_06375 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CLH39_06380 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CLH39_06385 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CLH39_06390 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CLH39_06400 PF10531 SLBB domain CLH39_06400 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLH39_06400 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLH39_06405 PF00384 Molybdopterin oxidoreductase CLH39_06405 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CLH39_06405 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CLH39_06410 PF00146 NADH dehydrogenase CLH39_06415 PF12838 4Fe-4S dicluster domain CLH39_06420 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CLH39_06425 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CLH39_06430 PF00361 Proton-conducting membrane transporter CLH39_06430 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CLH39_06435 PF00361 Proton-conducting membrane transporter CLH39_06435 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CLH39_06440 PF00361 Proton-conducting membrane transporter CLH39_06450 PF03060 Nitronate monooxygenase CLH39_06460 PF17757 UvrB interaction domain CLH39_06460 PF03461 TRCF domain CLH39_06460 PF00271 Helicase conserved C-terminal domain CLH39_06460 PF00270 DEAD/DEAH box helicase CLH39_06460 PF02559 CarD-like/TRCF domain CLH39_06465 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLH39_06470 PF02542 YgbB family CLH39_06475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_06475 PF00512 His Kinase A (phospho-acceptor) domain CLH39_06475 PF00672 HAMP domain CLH39_06480 PF00486 Transcriptional regulatory protein, C terminal CLH39_06480 PF00072 Response regulator receiver domain CLH39_06485 PF00814 Glycoprotease family CLH39_06490 PF03167 Uracil DNA glycosylase superfamily CLH39_06495 PF07690 Major Facilitator Superfamily CLH39_06500 PF06470 SMC proteins Flexible Hinge Domain CLH39_06500 PF02463 RecF/RecN/SMC N terminal domain CLH39_06510 PF12826 Helix-hairpin-helix motif CLH39_06510 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CLH39_06510 PF03120 NAD-dependent DNA ligase OB-fold domain CLH39_06510 PF01653 NAD-dependent DNA ligase adenylation domain CLH39_06510 PF00533 BRCA1 C Terminus (BRCT) domain CLH39_06525 PF04279 Intracellular septation protein A CLH39_06530 PF01641 SelR domain CLH39_06545 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLH39_06545 PF00005 ABC transporter CLH39_06550 PF00005 ABC transporter CLH39_06555 PF03922 OmpW family CLH39_06560 PF00005 ABC transporter CLH39_06565 PF10576 Iron-sulfur binding domain of endonuclease III CLH39_06565 PF00730 HhH-GPD superfamily base excision DNA repair protein CLH39_06565 PF00633 Helix-hairpin-helix motif CLH39_06570 PF04060 Putative Fe-S cluster CLH39_06580 PF11953 Domain of unknown function (DUF3470) CLH39_06580 PF00037 4Fe-4S binding domain CLH39_06585 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CLH39_06585 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CLH39_06595 PF13291 ACT domain CLH39_06595 PF04607 Region found in RelA / SpoT proteins CLH39_06595 PF02824 TGS domain CLH39_06600 PF00291 Pyridoxal-phosphate dependent enzyme CLH39_06605 PF00290 Tryptophan synthase alpha chain CLH39_06610 PF01039 Carboxyl transferase domain CLH39_06610 PF17848 Acetyl-coA carboxylase zinc finger domain CLH39_06615 PF12111 Polyribonucleotide phosphorylase C terminal CLH39_06615 PF10150 Ribonuclease E/G family CLH39_06615 PF00575 S1 RNA binding domain CLH39_06620 PF01479 S4 domain CLH39_06620 PF00849 RNA pseudouridylate synthase CLH39_06625 PF13419 Haloacid dehalogenase-like hydrolase CLH39_06630 PF00174 Oxidoreductase molybdopterin binding domain CLH39_06635 PF01794 Ferric reductase like transmembrane component CLH39_06640 PF01510 N-acetylmuramoyl-L-alanine amidase CLH39_06645 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLH39_06650 PF02545 Maf-like protein CLH39_06655 PF02620 Large ribosomal RNA subunit accumulation protein YceD CLH39_06660 PF01783 Ribosomal L32p protein family CLH39_06665 PF02504 Fatty acid synthesis protein CLH39_06670 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLH39_06670 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLH39_06675 PF00698 Acyl transferase domain CLH39_06685 PF00550 Phosphopantetheine attachment site CLH39_06690 PF02801 Beta-ketoacyl synthase, C-terminal domain CLH39_06690 PF00109 Beta-ketoacyl synthase, N-terminal domain CLH39_06700 PF04542 Sigma-70 region 2 CLH39_06700 PF08281 Sigma-70, region 4 CLH39_06715 PF13180 PDZ domain CLH39_06720 PF03144 Elongation factor Tu domain 2 CLH39_06720 PF00679 Elongation factor G C-terminus CLH39_06720 PF06421 GTP-binding protein LepA C-terminus CLH39_06720 PF00009 Elongation factor Tu GTP binding domain CLH39_06725 PF10502 Signal peptidase, peptidase S26 CLH39_06730 PF00035 Double-stranded RNA binding motif CLH39_06730 PF14622 Ribonuclease-III-like CLH39_06735 PF07650 KH domain CLH39_06735 PF01926 50S ribosome-binding GTPase CLH39_06740 PF02565 Recombination protein O C terminal CLH39_06740 PF11967 Recombination protein O N terminal CLH39_06755 PF00132 Bacterial transferase hexapeptide (six repeats) CLH39_06760 PF01027 Inhibitor of apoptosis-promoting Bax1 CLH39_06770 PF00883 Cytosol aminopeptidase family, catalytic domain CLH39_06770 PF02789 Cytosol aminopeptidase family, N-terminal domain CLH39_06780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_06780 PF03466 LysR substrate binding domain CLH39_06785 PF00171 Aldehyde dehydrogenase family CLH39_06790 PF03466 LysR substrate binding domain CLH39_06790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_06800 PF00877 NlpC/P60 family CLH39_06810 PF13193 AMP-binding enzyme C-terminal domain CLH39_06810 PF00501 AMP-binding enzyme CLH39_06810 PF16177 Acetyl-coenzyme A synthetase N-terminus CLH39_06815 PF00892 EamA-like transporter family CLH39_06830 PF01144 Coenzyme A transferase CLH39_06835 PF01144 Coenzyme A transferase CLH39_06840 PF00557 Metallopeptidase family M24 CLH39_06840 PF01321 Creatinase/Prolidase N-terminal domain CLH39_06845 PF06418 CTP synthase N-terminus CLH39_06845 PF00117 Glutamine amidotransferase class-I CLH39_06850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLH39_06855 PF00793 DAHP synthetase I family CLH39_06870 PF07690 Major Facilitator Superfamily CLH39_06880 PF00113 Enolase, C-terminal TIM barrel domain CLH39_06880 PF03952 Enolase, N-terminal domain CLH39_06885 PF04977 Septum formation initiator CLH39_06895 PF01430 Hsp33 protein CLH39_06910 PF03653 Uncharacterised protein family (UPF0093) CLH39_06915 PF00171 Aldehyde dehydrogenase family CLH39_06920 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CLH39_06920 PF06144 DNA polymerase III, delta subunit CLH39_06930 PF09334 tRNA synthetases class I (M) CLH39_06930 PF00133 tRNA synthetases class I (I, L, M and V) CLH39_06930 PF08264 Anticodon-binding domain of tRNA CLH39_06930 PF13603 Leucyl-tRNA synthetase, Domain 2 CLH39_06935 PF00471 Ribosomal protein L33 CLH39_06940 PF00830 Ribosomal L28 family CLH39_06945 PF07690 Major Facilitator Superfamily CLH39_06960 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_06965 PF00005 ABC transporter CLH39_06965 PF00571 CBS domain CLH39_06970 PF01554 MatE CLH39_06980 PF01197 Ribosomal protein L31 CLH39_06985 PF07690 Major Facilitator Superfamily CLH39_06995 PF00083 Sugar (and other) transporter CLH39_07000 PF01418 Helix-turn-helix domain, rpiR family CLH39_07000 PF01380 SIS domain CLH39_07005 PF04002 RadC-like JAB domain CLH39_07010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLH39_07015 PF02401 LytB protein CLH39_07020 PF14497 Glutathione S-transferase, C-terminal domain CLH39_07020 PF02798 Glutathione S-transferase, N-terminal domain CLH39_07025 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CLH39_07025 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CLH39_07035 PF01253 Translation initiation factor SUI1 CLH39_07050 PF13098 Thioredoxin-like domain CLH39_07055 PF02545 Maf-like protein CLH39_07060 PF02590 Predicted SPOUT methyltransferase CLH39_07070 PF01467 Cytidylyltransferase-like CLH39_07075 PF01218 Coproporphyrinogen III oxidase CLH39_07080 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CLH39_07080 PF02843 Phosphoribosylglycinamide synthetase, C domain CLH39_07080 PF02844 Phosphoribosylglycinamide synthetase, N domain CLH39_07085 PF01709 Transcriptional regulator CLH39_07090 PF05872 Bacterial protein of unknown function (DUF853) CLH39_07095 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLH39_07100 PF00180 Isocitrate/isopropylmalate dehydrogenase CLH39_07110 PF00107 Zinc-binding dehydrogenase CLH39_07110 PF08240 Alcohol dehydrogenase GroES-like domain CLH39_07115 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CLH39_07120 PF01433 Peptidase family M1 domain CLH39_07120 PF11940 Domain of unknown function (DUF3458) Ig-like fold CLH39_07120 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CLH39_07130 PF00816 H-NS histone family CLH39_07135 PF01523 Putative modulator of DNA gyrase CLH39_07140 PF00892 EamA-like transporter family CLH39_07145 PF01047 MarR family CLH39_07150 PF00583 Acetyltransferase (GNAT) family CLH39_07155 PF00202 Aminotransferase class-III CLH39_07160 PF06339 Ectoine synthase CLH39_07165 PF05721 Phytanoyl-CoA dioxygenase (PhyH) CLH39_07180 PF00005 ABC transporter CLH39_07185 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_07190 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_07195 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLH39_07200 PF02554 Carbon starvation protein CstA CLH39_07200 PF13722 5TM C-terminal transporter carbon starvation CstA CLH39_07205 PF04328 Selenoprotein, putative CLH39_07210 PF00793 DAHP synthetase I family CLH39_07215 PF02913 FAD linked oxidases, C-terminal domain CLH39_07215 PF01565 FAD binding domain CLH39_07225 PF01925 Sulfite exporter TauE/SafE CLH39_07230 PF07859 alpha/beta hydrolase fold CLH39_07240 PF00043 Glutathione S-transferase, C-terminal domain CLH39_07240 PF13417 Glutathione S-transferase, N-terminal domain CLH39_07245 PF00206 Lyase CLH39_07245 PF08328 Adenylosuccinate lyase C-terminal CLH39_07250 PF01322 Cytochrome C' CLH39_07255 PF00909 Ammonium Transporter Family CLH39_07260 PF00543 Nitrogen regulatory protein P-II CLH39_07265 PF01047 MarR family CLH39_07270 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CLH39_07275 PF07690 Major Facilitator Superfamily CLH39_07280 PF00302 Chloramphenicol acetyltransferase CLH39_07290 PF04228 Putative neutral zinc metallopeptidase CLH39_07295 PF03109 ABC1 family CLH39_07310 PF00925 GTP cyclohydrolase II CLH39_07315 PF02525 Flavodoxin-like fold CLH39_07320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_07320 PF03466 LysR substrate binding domain CLH39_07330 PF01169 Uncharacterized protein family UPF0016 CLH39_07335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLH39_07335 PF08447 PAS fold CLH39_07340 PF00072 Response regulator receiver domain CLH39_07340 PF00486 Transcriptional regulatory protein, C terminal CLH39_07345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_07345 PF00512 His Kinase A (phospho-acceptor) domain CLH39_07350 PF17284 Spermidine synthase tetramerisation domain CLH39_07355 PF14306 PUA-like domain CLH39_07355 PF01747 ATP-sulfurylase CLH39_07365 PF01627 Hpt domain CLH39_07365 PF00072 Response regulator receiver domain CLH39_07365 PF00512 His Kinase A (phospho-acceptor) domain CLH39_07365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_07365 PF00672 HAMP domain CLH39_07370 PF00072 Response regulator receiver domain CLH39_07370 PF00196 Bacterial regulatory proteins, luxR family CLH39_07375 PF00474 Sodium:solute symporter family CLH39_07395 PF01810 LysE type translocator CLH39_07400 PF00375 Sodium:dicarboxylate symporter family CLH39_07410 PF00043 Glutathione S-transferase, C-terminal domain CLH39_07410 PF02798 Glutathione S-transferase, N-terminal domain CLH39_07435 PF00155 Aminotransferase class I and II CLH39_07435 PF00392 Bacterial regulatory proteins, gntR family CLH39_07440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_07440 PF03466 LysR substrate binding domain CLH39_07445 PF01810 LysE type translocator CLH39_07460 PF00005 ABC transporter CLH39_07460 PF16326 ABC transporter C-terminal domain CLH39_07460 PF12848 ABC transporter CLH39_07470 PF00440 Bacterial regulatory proteins, tetR family CLH39_07475 PF01042 Endoribonuclease L-PSP CLH39_07480 PF03466 LysR substrate binding domain CLH39_07480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_07485 PF00155 Aminotransferase class I and II CLH39_07495 PF08713 DNA alkylation repair enzyme CLH39_07500 PF00149 Calcineurin-like phosphoesterase CLH39_07505 PF06628 Catalase-related immune-responsive CLH39_07505 PF00199 Catalase CLH39_07505 PF18011 C-terminal domain found in long catalases CLH39_07520 PF07715 TonB-dependent Receptor Plug Domain CLH39_07520 PF00593 TonB dependent receptor CLH39_07530 PF00037 4Fe-4S binding domain CLH39_07530 PF11953 Domain of unknown function (DUF3470) CLH39_07535 PF07690 Major Facilitator Superfamily CLH39_07540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_07540 PF03466 LysR substrate binding domain CLH39_07545 PF13419 Haloacid dehalogenase-like hydrolase CLH39_07555 PF00691 OmpA family CLH39_07560 PF03989 DNA gyrase C-terminal domain, beta-propeller CLH39_07560 PF00521 DNA gyrase/topoisomerase IV, subunit A CLH39_07565 PF00266 Aminotransferase class-V CLH39_07570 PF01842 ACT domain CLH39_07570 PF01817 Chorismate mutase type II CLH39_07570 PF00800 Prephenate dehydratase CLH39_07575 PF02153 Prephenate dehydrogenase CLH39_07580 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLH39_07585 PF02224 Cytidylate kinase CLH39_07590 PF00575 S1 RNA binding domain CLH39_07595 PF00216 Bacterial DNA-binding protein CLH39_07605 PF18073 Rubredoxin metal binding domain CLH39_07610 PF00294 pfkB family carbohydrate kinase CLH39_07615 PF01370 NAD dependent epimerase/dehydratase family CLH39_07620 PF14579 Helix-hairpin-helix motif CLH39_07620 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLH39_07620 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLH39_07620 PF02811 PHP domain CLH39_07625 PF00291 Pyridoxal-phosphate dependent enzyme CLH39_07630 PF13406 Transglycosylase SLT domain CLH39_07635 PF00850 Histone deacetylase domain CLH39_07640 PF01012 Electron transfer flavoprotein domain CLH39_07645 PF01012 Electron transfer flavoprotein domain CLH39_07645 PF00766 Electron transfer flavoprotein FAD-binding domain CLH39_07650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLH39_07650 PF12806 Acetyl-CoA dehydrogenase C-terminal like CLH39_07650 PF02770 Acyl-CoA dehydrogenase, middle domain CLH39_07650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLH39_07655 PF10417 C-terminal domain of 1-Cys peroxiredoxin CLH39_07655 PF00578 AhpC/TSA family CLH39_07665 PF10437 Bacterial lipoate protein ligase C-terminus CLH39_07665 PF03099 Biotin/lipoate A/B protein ligase family CLH39_07675 PF01245 Ribosomal protein L19 CLH39_07685 PF03193 RsgA GTPase CLH39_07690 PF16491 CAAX prenyl protease N-terminal, five membrane helices CLH39_07690 PF01435 Peptidase family M48 CLH39_07695 PF00929 Exonuclease CLH39_07700 PF05138 Phenylacetic acid catabolic protein CLH39_07705 PF06243 Phenylacetic acid degradation B CLH39_07710 PF05138 Phenylacetic acid catabolic protein CLH39_07715 PF01883 Iron-sulfur cluster assembly protein CLH39_07720 PF00175 Oxidoreductase NAD-binding domain CLH39_07720 PF00111 2Fe-2S iron-sulfur cluster binding domain CLH39_07720 PF00970 Oxidoreductase FAD-binding domain CLH39_07725 PF00171 Aldehyde dehydrogenase family CLH39_07730 PF00378 Enoyl-CoA hydratase/isomerase CLH39_07735 PF03061 Thioesterase superfamily CLH39_07740 PF00501 AMP-binding enzyme CLH39_07740 PF14535 AMP-binding enzyme C-terminal domain CLH39_07745 PF01648 4'-phosphopantetheinyl transferase superfamily CLH39_07750 PF00933 Glycosyl hydrolase family 3 N terminal domain CLH39_07755 PF02151 UvrB/uvrC motif CLH39_07755 PF01541 GIY-YIG catalytic domain CLH39_07755 PF08459 UvrC Helix-hairpin-helix N-terminal CLH39_07760 PF01066 CDP-alcohol phosphatidyltransferase CLH39_07770 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CLH39_07770 PF14489 QueF-like protein CLH39_07775 PF00463 Isocitrate lyase family CLH39_07780 PF00403 Heavy-metal-associated domain CLH39_07790 PF00115 Cytochrome C and Quinol oxidase polypeptide I CLH39_07805 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CLH39_07805 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLH39_07810 PF12801 4Fe-4S binding domain CLH39_07810 PF13746 4Fe-4S dicluster domain CLH39_07810 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CLH39_07825 PF13545 Crp-like helix-turn-helix domain CLH39_07825 PF00027 Cyclic nucleotide-binding domain CLH39_07830 PF00004 ATPase family associated with various cellular activities (AAA) CLH39_07830 PF07724 AAA domain (Cdc48 subfamily) CLH39_07830 PF17871 AAA lid domain CLH39_07830 PF02861 Clp amino terminal domain, pathogenicity island component CLH39_07830 PF10431 C-terminal, D2-small domain, of ClpB protein CLH39_07835 PF02677 Epoxyqueuosine reductase QueH CLH39_07840 PF03710 Glutamate-ammonia ligase adenylyltransferase CLH39_07840 PF08335 GlnD PII-uridylyltransferase CLH39_07855 PF07729 FCD domain CLH39_07855 PF00392 Bacterial regulatory proteins, gntR family CLH39_07865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLH39_07870 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_07875 PF12911 N-terminal TM domain of oligopeptide transport permease C CLH39_07875 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_07880 PF00005 ABC transporter CLH39_07880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLH39_07885 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CLH39_07885 PF00355 Rieske [2Fe-2S] domain CLH39_07890 PF00866 Ring hydroxylating beta subunit CLH39_07900 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CLH39_07900 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CLH39_07905 PF07497 Rho termination factor, RNA-binding domain CLH39_07905 PF07498 Rho termination factor, N-terminal domain CLH39_07905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLH39_07910 PF00085 Thioredoxin CLH39_07915 PF01751 Toprim domain CLH39_07915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_07915 PF00986 DNA gyrase B subunit, carboxyl terminus CLH39_07915 PF00204 DNA gyrase B CLH39_07920 PF00521 DNA gyrase/topoisomerase IV, subunit A CLH39_07925 PF00175 Oxidoreductase NAD-binding domain CLH39_07925 PF00970 Oxidoreductase FAD-binding domain CLH39_07925 PF00111 2Fe-2S iron-sulfur cluster binding domain CLH39_07930 PF01266 FAD dependent oxidoreductase CLH39_07935 PF13416 Bacterial extracellular solute-binding protein CLH39_07965 PF00576 HIUase/Transthyretin family CLH39_07980 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLH39_07980 PF01411 tRNA synthetases class II (A) CLH39_07980 PF02272 DHHA1 domain CLH39_07985 PF01206 Sulfurtransferase TusA CLH39_07990 PF00886 Ribosomal protein S16 CLH39_07995 PF01782 RimM N-terminal domain CLH39_08000 PF01746 tRNA (Guanine-1)-methyltransferase CLH39_08005 PF00892 EamA-like transporter family CLH39_08010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_08010 PF03466 LysR substrate binding domain CLH39_08015 PF10458 Valyl tRNA synthetase tRNA binding arm CLH39_08015 PF08264 Anticodon-binding domain of tRNA CLH39_08015 PF00133 tRNA synthetases class I (I, L, M and V) CLH39_08020 PF00334 Nucleoside diphosphate kinase CLH39_08025 PF04055 Radical SAM superfamily CLH39_08035 PF04551 GcpE protein CLH39_08040 PF13393 Histidyl-tRNA synthetase CLH39_08040 PF03129 Anticodon binding domain CLH39_08045 PF09976 Tetratricopeptide repeat-like domain CLH39_08050 PF13360 PQQ-like domain CLH39_08055 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CLH39_08055 PF01926 50S ribosome-binding GTPase CLH39_08060 PF00155 Aminotransferase class I and II CLH39_08065 PF17209 Hfq protein CLH39_08070 PF01926 50S ribosome-binding GTPase CLH39_08070 PF13167 GTP-binding GTPase N-terminal CLH39_08070 PF16360 GTP-binding GTPase Middle Region CLH39_08075 PF01145 SPFH domain / Band 7 family CLH39_08075 PF12221 Bacterial membrane protein N terminal CLH39_08080 PF01145 SPFH domain / Band 7 family CLH39_08085 PF13393 Histidyl-tRNA synthetase CLH39_08090 PF00709 Adenylosuccinate synthetase CLH39_08095 PF00156 Phosphoribosyl transferase domain CLH39_08100 PF01165 Ribosomal protein S21 CLH39_08105 PF01807 CHC2 zinc finger CLH39_08105 PF08275 DNA primase catalytic core, N-terminal domain CLH39_08105 PF08278 DNA primase DnaG DnaB-binding CLH39_08105 PF10410 DnaB-helicase binding domain of primase CLH39_08110 PF04545 Sigma-70, region 4 CLH39_08110 PF00140 Sigma-70 factor, region 1.2 CLH39_08110 PF03979 Sigma-70 factor, region 1.1 CLH39_08110 PF04539 Sigma-70 region 3 CLH39_08110 PF04542 Sigma-70 region 2 CLH39_08110 PF04546 Sigma-70, non-essential region CLH39_08115 PF00672 HAMP domain CLH39_08115 PF00512 His Kinase A (phospho-acceptor) domain CLH39_08115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_08120 PF00072 Response regulator receiver domain CLH39_08120 PF00486 Transcriptional regulatory protein, C terminal CLH39_08125 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family CLH39_08130 PF01979 Amidohydrolase family CLH39_08140 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLH39_08140 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLH39_08145 PF00111 2Fe-2S iron-sulfur cluster binding domain CLH39_08145 PF01799 [2Fe-2S] binding domain CLH39_08150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_08150 PF03466 LysR substrate binding domain CLH39_08155 PF03746 LamB/YcsF family CLH39_08165 PF03594 Benzoate membrane transport protein CLH39_08170 PF12833 Helix-turn-helix domain CLH39_08170 PF02311 AraC-like ligand binding domain CLH39_08175 PF07690 Major Facilitator Superfamily CLH39_08180 PF07690 Major Facilitator Superfamily CLH39_08185 PF00795 Carbon-nitrogen hydrolase CLH39_08195 PF05726 Pirin C-terminal cupin domain CLH39_08195 PF02678 Pirin CLH39_08205 PF02798 Glutathione S-transferase, N-terminal domain CLH39_08210 PF12843 Putative quorum-sensing-regulated virulence factor CLH39_08215 PF01738 Dienelactone hydrolase family CLH39_08230 PF01266 FAD dependent oxidoreductase CLH39_08240 PF13419 Haloacid dehalogenase-like hydrolase CLH39_08245 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_08250 PF00005 ABC transporter CLH39_08250 PF08402 TOBE domain CLH39_08255 PF03466 LysR substrate binding domain CLH39_08255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_08265 PF06750 Bacterial Peptidase A24 N-terminal domain CLH39_08265 PF01478 Type IV leader peptidase family CLH39_08290 PF04954 Siderophore-interacting protein CLH39_08290 PF08021 Siderophore-interacting FAD-binding domain CLH39_08305 PF07005 Sugar-binding N-terminal domain CLH39_08305 PF17042 Nucleotide-binding C-terminal domain CLH39_08310 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain CLH39_08310 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain CLH39_08325 PF00005 ABC transporter CLH39_08330 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_08335 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_08340 PF00356 Bacterial regulatory proteins, lacI family CLH39_08345 PF03466 LysR substrate binding domain CLH39_08345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_08350 PF07687 Peptidase dimerisation domain CLH39_08350 PF01546 Peptidase family M20/M25/M40 CLH39_08355 PF07690 Major Facilitator Superfamily CLH39_08370 PF17876 Cold shock domain CLH39_08370 PF00575 S1 RNA binding domain CLH39_08370 PF08206 Ribonuclease B OB domain CLH39_08370 PF08461 Ribonuclease R winged-helix domain CLH39_08370 PF00773 RNB domain CLH39_08375 PF08032 RNA 2'-O ribose methyltransferase substrate binding CLH39_08375 PF00588 SpoU rRNA Methylase family CLH39_08380 PF01053 Cys/Met metabolism PLP-dependent enzyme CLH39_08385 PF00155 Aminotransferase class I and II CLH39_08385 PF00392 Bacterial regulatory proteins, gntR family CLH39_08390 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLH39_08395 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLH39_08400 PF10414 Sirohaem synthase dimerisation region CLH39_08400 PF14824 Sirohaem biosynthesis protein central CLH39_08400 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLH39_08410 PF13186 Iron-sulfur cluster-binding domain CLH39_08410 PF04055 Radical SAM superfamily CLH39_08415 PF17805 AsnC-like ligand binding domain CLH39_08420 PF17805 AsnC-like ligand binding domain CLH39_08420 PF13404 AsnC-type helix-turn-helix domain CLH39_08425 PF13404 AsnC-type helix-turn-helix domain CLH39_08425 PF17805 AsnC-like ligand binding domain CLH39_08435 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLH39_08440 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLH39_08440 PF14824 Sirohaem biosynthesis protein central CLH39_08440 PF10414 Sirohaem synthase dimerisation region CLH39_08450 PF00216 Bacterial DNA-binding protein CLH39_08460 PF00589 Phage integrase family CLH39_08495 PF04381 Putative exonuclease, RdgC CLH39_08515 PF00436 Single-strand binding protein family CLH39_08580 PF03354 Phage Terminase CLH39_08620 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CLH39_08635 PF00574 Clp protease CLH39_08740 PF02586 SOS response associated peptidase (SRAP) CLH39_08760 PF00313 'Cold-shock' DNA-binding domain CLH39_08775 PF08241 Methyltransferase domain CLH39_08785 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_08790 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_08795 PF12857 TOBE-like domain CLH39_08795 PF00005 ABC transporter CLH39_08805 PF01618 MotA/TolQ/ExbB proton channel family CLH39_08810 PF02472 Biopolymer transport protein ExbD/TolR CLH39_08815 PF00486 Transcriptional regulatory protein, C terminal CLH39_08815 PF00072 Response regulator receiver domain CLH39_08820 PF08521 Two-component sensor kinase N-terminal CLH39_08820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_08820 PF00512 His Kinase A (phospho-acceptor) domain CLH39_08825 PF02705 K+ potassium transporter CLH39_08840 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CLH39_08850 PF00361 Proton-conducting membrane transporter CLH39_08855 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CLH39_08860 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CLH39_08860 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CLH39_08860 PF00361 Proton-conducting membrane transporter CLH39_08860 PF13244 Domain of unknown function (DUF4040) CLH39_08865 PF04055 Radical SAM superfamily CLH39_08865 PF06969 HemN C-terminal domain CLH39_08870 PF03060 Nitronate monooxygenase CLH39_08880 PF01835 MG2 domain CLH39_08880 PF07703 Alpha-2-macroglobulin bait region domain CLH39_08880 PF00207 Alpha-2-macroglobulin family CLH39_08885 PF00912 Transglycosylase CLH39_08885 PF00905 Penicillin binding protein transpeptidase domain CLH39_08900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLH39_08900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLH39_08905 PF00171 Aldehyde dehydrogenase family CLH39_08910 PF00474 Sodium:solute symporter family CLH39_08915 PF04341 Protein of unknown function, DUF485 CLH39_08920 PF00378 Enoyl-CoA hydratase/isomerase CLH39_08925 PF00501 AMP-binding enzyme CLH39_08925 PF13193 AMP-binding enzyme C-terminal domain CLH39_08935 PF04381 Putative exonuclease, RdgC CLH39_08940 PF07690 Major Facilitator Superfamily CLH39_08940 PF00083 Sugar (and other) transporter CLH39_08945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_08945 PF00512 His Kinase A (phospho-acceptor) domain CLH39_08950 PF00072 Response regulator receiver domain CLH39_08950 PF00486 Transcriptional regulatory protein, C terminal CLH39_08955 PF00154 recA bacterial DNA recombination protein CLH39_08960 PF02631 RecX family CLH39_08965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_08965 PF03466 LysR substrate binding domain CLH39_08970 PF01717 Cobalamin-independent synthase, Catalytic domain CLH39_08970 PF08267 Cobalamin-independent synthase, N-terminal domain CLH39_08980 PF00549 CoA-ligase CLH39_08980 PF08442 ATP-grasp domain CLH39_08985 PF00549 CoA-ligase CLH39_08985 PF02629 CoA binding domain CLH39_08990 PF03741 Integral membrane protein TerC family CLH39_08995 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CLH39_08995 PF03900 Porphobilinogen deaminase, C-terminal domain CLH39_09005 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CLH39_09015 PF00719 Inorganic pyrophosphatase CLH39_09020 PF01557 Fumarylacetoacetate (FAA) hydrolase family CLH39_09025 PF04542 Sigma-70 region 2 CLH39_09025 PF08281 Sigma-70, region 4 CLH39_09030 PF16220 Domain of unknown function (DUF4880) CLH39_09030 PF04773 FecR protein CLH39_09035 PF00593 TonB dependent receptor CLH39_09035 PF07715 TonB-dependent Receptor Plug Domain CLH39_09045 PF08281 Sigma-70, region 4 CLH39_09045 PF04542 Sigma-70 region 2 CLH39_09055 PF00593 TonB dependent receptor CLH39_09055 PF07715 TonB-dependent Receptor Plug Domain CLH39_09055 PF07660 Secretin and TonB N terminus short domain CLH39_09085 PF00263 Bacterial type II and III secretion system protein CLH39_09085 PF13629 Pilus formation protein N terminal region CLH39_09085 PF04972 BON domain CLH39_09090 PF00437 Type II/IV secretion system protein CLH39_09120 PF07715 TonB-dependent Receptor Plug Domain CLH39_09120 PF07660 Secretin and TonB N terminus short domain CLH39_09120 PF00593 TonB dependent receptor CLH39_09130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLH39_09135 PF02687 FtsX-like permease family CLH39_09135 PF12704 MacB-like periplasmic core domain CLH39_09135 PF00005 ABC transporter CLH39_09140 PF02321 Outer membrane efflux protein CLH39_09150 PF01636 Phosphotransferase enzyme family CLH39_09155 PF01207 Dihydrouridine synthase (Dus) CLH39_09165 PF03631 Virulence factor BrkB CLH39_09175 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CLH39_09180 PF01264 Chorismate synthase CLH39_09195 PF00456 Transketolase, thiamine diphosphate binding domain CLH39_09195 PF17831 Pyruvate dehydrogenase E1 component middle domain CLH39_09200 PF00043 Glutathione S-transferase, C-terminal domain CLH39_09200 PF02798 Glutathione S-transferase, N-terminal domain CLH39_09205 PF02627 Carboxymuconolactone decarboxylase family CLH39_09210 PF00392 Bacterial regulatory proteins, gntR family CLH39_09210 PF00155 Aminotransferase class I and II CLH39_09215 PF00330 Aconitase family (aconitate hydratase) CLH39_09220 PF00694 Aconitase C-terminal domain CLH39_09225 PF00180 Isocitrate/isopropylmalate dehydrogenase CLH39_09230 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLH39_09230 PF02774 Semialdehyde dehydrogenase, dimerisation domain CLH39_09240 PF01416 tRNA pseudouridine synthase CLH39_09250 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_09255 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CLH39_09260 PF08534 Redoxin CLH39_09270 PF13593 SBF-like CPA transporter family (DUF4137) CLH39_09275 PF12833 Helix-turn-helix domain CLH39_09280 PF00117 Glutamine amidotransferase class-I CLH39_09280 PF00958 GMP synthase C terminal domain CLH39_09280 PF02540 NAD synthase CLH39_09285 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CLH39_09290 PF00501 AMP-binding enzyme CLH39_09290 PF13193 AMP-binding enzyme C-terminal domain CLH39_09295 PF04461 Protein of unknown function (DUF520) CLH39_09305 PF01061 ABC-2 type transporter CLH39_09310 PF00005 ABC transporter CLH39_09315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLH39_09320 PF17676 LD-carboxypeptidase C-terminal domain CLH39_09320 PF02016 LD-carboxypeptidase N-terminal domain CLH39_09325 PF00005 ABC transporter CLH39_09325 PF12848 ABC transporter CLH39_09330 PF01205 Uncharacterized protein family UPF0029 CLH39_09345 PF00085 Thioredoxin CLH39_09350 PF00860 Permease family CLH39_09355 PF00814 Glycoprotease family CLH39_09360 PF02660 Glycerol-3-phosphate acyltransferase CLH39_09365 PF01975 Survival protein SurE CLH39_09375 PF01551 Peptidase family M23 CLH39_09375 PF01476 LysM domain CLH39_09380 PF05958 tRNA (Uracil-5-)-methyltransferase CLH39_09390 PF01266 FAD dependent oxidoreductase CLH39_09400 PF00583 Acetyltransferase (GNAT) family CLH39_09405 PF04072 Leucine carboxyl methyltransferase CLH39_09410 PF13411 MerR HTH family regulatory protein CLH39_09410 PF07739 TipAS antibiotic-recognition domain CLH39_09415 PF14698 Argininosuccinate lyase C-terminal CLH39_09415 PF00206 Lyase CLH39_09420 PF00924 Mechanosensitive ion channel CLH39_09425 PF00543 Nitrogen regulatory protein P-II CLH39_09430 PF00248 Aldo/keto reductase family CLH39_09435 PF07690 Major Facilitator Superfamily CLH39_09440 PF04345 Chorismate lyase CLH39_09445 PF00849 RNA pseudouridylate synthase CLH39_09445 PF01479 S4 domain CLH39_09450 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CLH39_09455 PF03009 Glycerophosphoryl diester phosphodiesterase family CLH39_09460 PF00639 PPIC-type PPIASE domain CLH39_09460 PF09312 SurA N-terminal domain CLH39_09465 PF01551 Peptidase family M23 CLH39_09465 PF01476 LysM domain CLH39_09465 PF08525 Opacity-associated protein A N-terminal motif CLH39_09470 PF03591 AzlC protein CLH39_09490 PF01557 Fumarylacetoacetate (FAA) hydrolase family CLH39_09495 PF03466 LysR substrate binding domain CLH39_09495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_09500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_09500 PF03466 LysR substrate binding domain CLH39_09505 PF13291 ACT domain CLH39_09505 PF04607 Region found in RelA / SpoT proteins CLH39_09505 PF02824 TGS domain CLH39_09510 PF01192 RNA polymerase Rpb6 CLH39_09515 PF00625 Guanylate kinase CLH39_09535 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CLH39_09535 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CLH39_09535 PF01276 Orn/Lys/Arg decarboxylase, major domain CLH39_09540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_09540 PF03466 LysR substrate binding domain CLH39_09555 PF02803 Thiolase, C-terminal domain CLH39_09555 PF00108 Thiolase, N-terminal domain CLH39_09560 PF02803 Thiolase, C-terminal domain CLH39_09560 PF00108 Thiolase, N-terminal domain CLH39_09580 PF00005 ABC transporter CLH39_09585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLH39_09585 PF00529 HlyD membrane-fusion protein of T1SS CLH39_09590 PF00873 AcrB/AcrD/AcrF family CLH39_09595 PF02321 Outer membrane efflux protein CLH39_09600 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CLH39_09620 PF02803 Thiolase, C-terminal domain CLH39_09620 PF00108 Thiolase, N-terminal domain CLH39_09630 PF02515 CoA-transferase family III CLH39_09635 PF12697 Alpha/beta hydrolase family CLH39_09650 PF01220 Dehydroquinase class II CLH39_09655 PF03480 Bacterial extracellular solute-binding protein, family 7 CLH39_09660 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CLH39_09665 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_09670 PF00376 MerR family regulatory protein CLH39_09670 PF09278 MerR, DNA binding CLH39_09675 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLH39_09675 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLH39_09680 PF01022 Bacterial regulatory protein, arsR family CLH39_09685 PF00679 Elongation factor G C-terminus CLH39_09685 PF14492 Elongation Factor G, domain II CLH39_09685 PF03764 Elongation factor G, domain IV CLH39_09685 PF03144 Elongation factor Tu domain 2 CLH39_09685 PF00009 Elongation factor Tu GTP binding domain CLH39_09695 PF02630 SCO1/SenC CLH39_09700 PF01432 Peptidase family M3 CLH39_09705 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CLH39_09705 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CLH39_09710 PF00196 Bacterial regulatory proteins, luxR family CLH39_09710 PF00072 Response regulator receiver domain CLH39_09715 PF00989 PAS fold CLH39_09715 PF00512 His Kinase A (phospho-acceptor) domain CLH39_09715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_09720 PF00456 Transketolase, thiamine diphosphate binding domain CLH39_09720 PF17831 Pyruvate dehydrogenase E1 component middle domain CLH39_09725 PF02817 e3 binding domain CLH39_09725 PF00364 Biotin-requiring enzyme CLH39_09725 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CLH39_09730 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLH39_09730 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLH39_09735 PF02875 Mur ligase family, glutamate ligase domain CLH39_09735 PF08245 Mur ligase middle domain CLH39_09745 PF02674 Colicin V production protein CLH39_09750 PF00156 Phosphoribosyl transferase domain CLH39_09755 PF00144 Beta-lactamase CLH39_09765 PF01914 MarC family integral membrane protein CLH39_09770 PF01966 HD domain CLH39_09770 PF08335 GlnD PII-uridylyltransferase CLH39_09770 PF01909 Nucleotidyltransferase domain CLH39_09775 PF00557 Metallopeptidase family M24 CLH39_09780 PF00318 Ribosomal protein S2 CLH39_09785 PF00889 Elongation factor TS CLH39_09790 PF00696 Amino acid kinase family CLH39_09795 PF01765 Ribosome recycling factor CLH39_09800 PF01255 Putative undecaprenyl diphosphate synthase CLH39_09810 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CLH39_09810 PF13288 DXP reductoisomerase C-terminal domain CLH39_09810 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CLH39_09815 PF13180 PDZ domain CLH39_09815 PF02163 Peptidase family M50 CLH39_09815 PF17820 PDZ domain CLH39_09820 PF01103 Surface antigen CLH39_09820 PF07244 Surface antigen variable number repeat CLH39_09825 PF03938 Outer membrane protein (OmpH-like) CLH39_09830 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CLH39_09830 PF00132 Bacterial transferase hexapeptide (six repeats) CLH39_09835 PF07977 FabA-like domain CLH39_09840 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CLH39_09840 PF00132 Bacterial transferase hexapeptide (six repeats) CLH39_09845 PF02684 Lipid-A-disaccharide synthetase CLH39_09850 PF01351 Ribonuclease HII CLH39_09855 PF00588 SpoU rRNA Methylase family CLH39_09855 PF08032 RNA 2'-O ribose methyltransferase substrate binding CLH39_09860 PF01425 Amidase CLH39_09865 PF03618 Kinase/pyrophosphorylase CLH39_09870 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CLH39_09870 PF02896 PEP-utilising enzyme, TIM barrel domain CLH39_09870 PF00391 PEP-utilising enzyme, mobile domain CLH39_09875 PF00440 Bacterial regulatory proteins, tetR family CLH39_09880 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLH39_09885 PF01668 SmpB protein CLH39_09890 PF03364 Polyketide cyclase / dehydrase and lipid transport CLH39_09895 PF03658 RnfH family Ubiquitin CLH39_09900 PF02770 Acyl-CoA dehydrogenase, middle domain CLH39_09900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLH39_09900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLH39_09910 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CLH39_09910 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CLH39_09915 PF01571 Aminomethyltransferase folate-binding domain CLH39_09920 PF02618 YceG-like family CLH39_09930 PF09115 DNA polymerase III, delta subunit, C terminal CLH39_09935 PF01026 TatD related DNase CLH39_09945 PF03358 NADPH-dependent FMN reductase CLH39_09955 PF00043 Glutathione S-transferase, C-terminal domain CLH39_09955 PF02798 Glutathione S-transferase, N-terminal domain CLH39_09960 PF03960 ArsC family CLH39_09965 PF04264 YceI-like domain CLH39_09975 PF01292 Prokaryotic cytochrome b561 CLH39_09995 PF00583 Acetyltransferase (GNAT) family CLH39_10020 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLH39_10065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_10065 PF03466 LysR substrate binding domain CLH39_10070 PF08240 Alcohol dehydrogenase GroES-like domain CLH39_10070 PF00107 Zinc-binding dehydrogenase CLH39_10100 PF00970 Oxidoreductase FAD-binding domain CLH39_10100 PF00111 2Fe-2S iron-sulfur cluster binding domain CLH39_10105 PF14525 AraC-binding-like domain CLH39_10105 PF12833 Helix-turn-helix domain CLH39_10120 PF00593 TonB dependent receptor CLH39_10120 PF07715 TonB-dependent Receptor Plug Domain CLH39_10130 PF01965 DJ-1/PfpI family CLH39_10135 PF12706 Beta-lactamase superfamily domain CLH39_10140 PF00857 Isochorismatase family CLH39_10155 PF12823 Domain of unknown function (DUF3817) CLH39_10160 PF01965 DJ-1/PfpI family CLH39_10160 PF12833 Helix-turn-helix domain CLH39_10165 PF07715 TonB-dependent Receptor Plug Domain CLH39_10165 PF00593 TonB dependent receptor CLH39_10165 PF07660 Secretin and TonB N terminus short domain CLH39_10205 PF04002 RadC-like JAB domain CLH39_10225 PF07715 TonB-dependent Receptor Plug Domain CLH39_10225 PF00593 TonB dependent receptor CLH39_10260 PF03150 Di-haem cytochrome c peroxidase CLH39_10260 PF00034 Cytochrome c CLH39_10270 PF07715 TonB-dependent Receptor Plug Domain CLH39_10270 PF00593 TonB dependent receptor CLH39_10290 PF10411 Disulfide bond isomerase protein N-terminus CLH39_10290 PF13098 Thioredoxin-like domain CLH39_10315 PF01402 Ribbon-helix-helix protein, copG family CLH39_10460 PF03976 Polyphosphate kinase 2 (PPK2) CLH39_10470 PF02222 ATP-grasp domain CLH39_10475 PF07731 Multicopper oxidase CLH39_10475 PF07732 Multicopper oxidase CLH39_10475 PF00394 Multicopper oxidase CLH39_10485 PF00589 Phage integrase family CLH39_10485 PF02899 Phage integrase, N-terminal SAM-like domain CLH39_10490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_10490 PF03466 LysR substrate binding domain CLH39_10505 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ CLH39_10510 PF00403 Heavy-metal-associated domain CLH39_10520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_10520 PF03466 LysR substrate binding domain CLH39_10530 PF07690 Major Facilitator Superfamily CLH39_10535 PF01494 FAD binding domain CLH39_10540 PF00171 Aldehyde dehydrogenase family CLH39_10550 PF00596 Class II Aldolase and Adducin N-terminal domain CLH39_10555 PF12833 Helix-turn-helix domain CLH39_10555 PF02311 AraC-like ligand binding domain CLH39_10560 PF00034 Cytochrome c CLH39_10565 PF00582 Universal stress protein family CLH39_10570 PF08241 Methyltransferase domain CLH39_10575 PF07995 Glucose / Sorbosone dehydrogenase CLH39_10580 PF00206 Lyase CLH39_10580 PF10415 Fumarase C C-terminus CLH39_10585 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CLH39_10585 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLH39_10595 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLH39_10595 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLH39_10600 PF00326 Prolyl oligopeptidase family CLH39_10605 PF02798 Glutathione S-transferase, N-terminal domain CLH39_10605 PF00043 Glutathione S-transferase, C-terminal domain CLH39_10610 PF00005 ABC transporter CLH39_10615 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLH39_10615 PF00005 ABC transporter CLH39_10620 PF02653 Branched-chain amino acid transport system / permease component CLH39_10620 PF11862 Domain of unknown function (DUF3382) CLH39_10625 PF02653 Branched-chain amino acid transport system / permease component CLH39_10630 PF13458 Periplasmic binding protein CLH39_10640 PF13416 Bacterial extracellular solute-binding protein CLH39_10645 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_10650 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_10655 PF17912 MalK OB fold domain CLH39_10655 PF00005 ABC transporter CLH39_10660 PF13458 Periplasmic binding protein CLH39_10665 PF00210 Ferritin-like domain CLH39_10670 PF03466 LysR substrate binding domain CLH39_10670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_10675 PF00271 Helicase conserved C-terminal domain CLH39_10675 PF00270 DEAD/DEAH box helicase CLH39_10675 PF17191 RecG wedge domain CLH39_10680 PF01042 Endoribonuclease L-PSP CLH39_10685 PF00970 Oxidoreductase FAD-binding domain CLH39_10685 PF00175 Oxidoreductase NAD-binding domain CLH39_10695 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_10700 PF08402 TOBE domain CLH39_10700 PF00005 ABC transporter CLH39_10720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_10720 PF03466 LysR substrate binding domain CLH39_10725 PF13673 Acetyltransferase (GNAT) domain CLH39_10730 PF00120 Glutamine synthetase, catalytic domain CLH39_10730 PF03951 Glutamine synthetase, beta-Grasp domain CLH39_10735 PF04055 Radical SAM superfamily CLH39_10735 PF06969 HemN C-terminal domain CLH39_10740 PF01725 Ham1 family CLH39_10745 PF03725 3' exoribonuclease family, domain 2 CLH39_10745 PF01138 3' exoribonuclease family, domain 1 CLH39_10750 PF13175 AAA ATPase domain CLH39_10755 PF00149 Calcineurin-like phosphoesterase CLH39_10760 PF03755 YicC-like family, N-terminal region CLH39_10760 PF08340 Domain of unknown function (DUF1732) CLH39_10775 PF01494 FAD binding domain CLH39_10795 PF07690 Major Facilitator Superfamily CLH39_10805 PF07687 Peptidase dimerisation domain CLH39_10805 PF01546 Peptidase family M20/M25/M40 CLH39_10810 PF00011 Hsp20/alpha crystallin family CLH39_10815 PF00860 Permease family CLH39_10820 PF01979 Amidohydrolase family CLH39_10825 PF03069 Acetamidase/Formamidase family CLH39_10835 PF00593 TonB dependent receptor CLH39_10835 PF07715 TonB-dependent Receptor Plug Domain CLH39_10840 PF13247 4Fe-4S dicluster domain CLH39_10845 PF03916 Polysulphide reductase, NrfD CLH39_10850 PF01568 Molydopterin dinucleotide binding domain CLH39_10850 PF00384 Molybdopterin oxidoreductase CLH39_10850 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CLH39_10855 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_10865 PF14537 Cytochrome c3 CLH39_10865 PF00890 FAD binding domain CLH39_10870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_10870 PF03466 LysR substrate binding domain CLH39_10875 PF00072 Response regulator receiver domain CLH39_10875 PF02954 Bacterial regulatory protein, Fis family CLH39_10875 PF00158 Sigma-54 interaction domain CLH39_10880 PF00512 His Kinase A (phospho-acceptor) domain CLH39_10880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_10880 PF02743 Cache domain CLH39_10885 PF00375 Sodium:dicarboxylate symporter family CLH39_10890 PF00206 Lyase CLH39_10890 PF10415 Fumarase C C-terminus CLH39_10900 PF00677 Lumazine binding domain CLH39_10905 PF00106 short chain dehydrogenase CLH39_10910 PF00296 Luciferase-like monooxygenase CLH39_10925 PF00691 OmpA family CLH39_10925 PF13677 Membrane MotB of proton-channel complex MotA/MotB CLH39_10930 PF01618 MotA/TolQ/ExbB proton channel family CLH39_10940 PF00768 D-alanyl-D-alanine carboxypeptidase CLH39_10945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_10945 PF03466 LysR substrate binding domain CLH39_10950 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_10985 PF02811 PHP domain CLH39_10985 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLH39_10985 PF14579 Helix-hairpin-helix motif CLH39_10985 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLH39_10990 PF09424 Yqey-like protein CLH39_11000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLH39_11005 PF02254 TrkA-N domain CLH39_11005 PF02080 TrkA-C domain CLH39_11010 PF02386 Cation transport protein CLH39_11025 PF03781 Sulfatase-modifying factor enzyme 1 CLH39_11040 PF01266 FAD dependent oxidoreductase CLH39_11045 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLH39_11045 PF00034 Cytochrome c CLH39_11050 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLH39_11060 PF00291 Pyridoxal-phosphate dependent enzyme CLH39_11065 PF17853 GGDEF-like domain CLH39_11065 PF12833 Helix-turn-helix domain CLH39_11070 PF08240 Alcohol dehydrogenase GroES-like domain CLH39_11070 PF00107 Zinc-binding dehydrogenase CLH39_11135 PF01464 Transglycosylase SLT domain CLH39_11150 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CLH39_11175 PF04335 VirB8 protein CLH39_11185 PF03743 Bacterial conjugation TrbI-like protein CLH39_11190 PF00437 Type II/IV secretion system protein CLH39_11225 PF05872 Bacterial protein of unknown function (DUF853) CLH39_11230 PF18272 single-stranded DNA binding TraI N-terminal subdomain CLH39_11230 PF07057 DNA helicase TraI CLH39_11230 PF08751 TrwC relaxase CLH39_11230 PF18340 DNA relaxase TraI 2B/2B-like domain CLH39_11260 PF02195 ParB-like nuclease domain CLH39_11285 PF07364 Metallopeptidase family M81 CLH39_11285 PF07171 MlrC C-terminus CLH39_11290 PF01546 Peptidase family M20/M25/M40 CLH39_11290 PF07687 Peptidase dimerisation domain CLH39_11295 PF00795 Carbon-nitrogen hydrolase CLH39_11300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLH39_11300 PF00005 ABC transporter CLH39_11305 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_11310 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_11315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLH39_11320 PF07687 Peptidase dimerisation domain CLH39_11320 PF01546 Peptidase family M20/M25/M40 CLH39_11325 PF00291 Pyridoxal-phosphate dependent enzyme CLH39_11330 PF01418 Helix-turn-helix domain, rpiR family CLH39_11330 PF01380 SIS domain CLH39_11340 PF01820 D-ala D-ala ligase N-terminus CLH39_11340 PF07478 D-ala D-ala ligase C-terminus CLH39_11345 PF02875 Mur ligase family, glutamate ligase domain CLH39_11345 PF08245 Mur ligase middle domain CLH39_11345 PF01225 Mur ligase family, catalytic domain CLH39_11350 PF01225 Mur ligase family, catalytic domain CLH39_11350 PF08245 Mur ligase middle domain CLH39_11350 PF02875 Mur ligase family, glutamate ligase domain CLH39_11370 PF00529 HlyD membrane-fusion protein of T1SS CLH39_11375 PF00005 ABC transporter CLH39_11375 PF03412 Peptidase C39 family CLH39_11375 PF00664 ABC transporter transmembrane region CLH39_11385 PF02321 Outer membrane efflux protein CLH39_11395 PF00486 Transcriptional regulatory protein, C terminal CLH39_11405 PF01883 Iron-sulfur cluster assembly protein CLH39_11410 PF01592 NifU-like N terminal domain CLH39_11415 PF00266 Aminotransferase class-V CLH39_11420 PF01458 Uncharacterized protein family (UPF0051) CLH39_11425 PF00005 ABC transporter CLH39_11430 PF01458 Uncharacterized protein family (UPF0051) CLH39_11435 PF02082 Transcriptional regulator CLH39_11440 PF00005 ABC transporter CLH39_11440 PF00664 ABC transporter transmembrane region CLH39_11455 PF04305 Protein of unknown function (DUF455) CLH39_11465 PF00216 Bacterial DNA-binding protein CLH39_11470 PF01588 Putative tRNA binding domain CLH39_11470 PF03483 B3/4 domain CLH39_11470 PF03484 tRNA synthetase B5 domain CLH39_11470 PF03147 Ferredoxin-fold anticodon binding domain CLH39_11470 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CLH39_11475 PF01409 tRNA synthetases class II core domain (F) CLH39_11475 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CLH39_11480 PF00453 Ribosomal protein L20 CLH39_11485 PF01632 Ribosomal protein L35 CLH39_11490 PF01078 Magnesium chelatase, subunit ChlI CLH39_11490 PF13335 Magnesium chelatase, subunit ChlI C-terminal CLH39_11515 PF00391 PEP-utilising enzyme, mobile domain CLH39_11515 PF02896 PEP-utilising enzyme, TIM barrel domain CLH39_11515 PF05524 PEP-utilising enzyme, N-terminal CLH39_11520 PF00381 PTS HPr component phosphorylation site CLH39_11530 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CLH39_11530 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CLH39_11535 PF00707 Translation initiation factor IF-3, C-terminal domain CLH39_11535 PF05198 Translation initiation factor IF-3, N-terminal domain CLH39_11540 PF03129 Anticodon binding domain CLH39_11540 PF02824 TGS domain CLH39_11540 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLH39_11540 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLH39_11555 PF00294 pfkB family carbohydrate kinase CLH39_11565 PF03891 Domain of unknown function (DUF333) CLH39_11575 PF13649 Methyltransferase domain CLH39_11580 PF01957 NfeD-like C-terminal, partner-binding CLH39_11585 PF01145 SPFH domain / Band 7 family CLH39_11585 PF16200 C-terminal region of band_7 CLH39_11605 PF00860 Permease family CLH39_11610 PF01979 Amidohydrolase family CLH39_11620 PF00356 Bacterial regulatory proteins, lacI family CLH39_11630 PF01810 LysE type translocator CLH39_11635 PF07690 Major Facilitator Superfamily CLH39_11640 PF00106 short chain dehydrogenase CLH39_11645 PF00175 Oxidoreductase NAD-binding domain CLH39_11645 PF00111 2Fe-2S iron-sulfur cluster binding domain CLH39_11645 PF00970 Oxidoreductase FAD-binding domain CLH39_11650 PF00866 Ring hydroxylating beta subunit CLH39_11655 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CLH39_11655 PF00355 Rieske [2Fe-2S] domain CLH39_11660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_11660 PF03466 LysR substrate binding domain CLH39_11665 PF00175 Oxidoreductase NAD-binding domain CLH39_11665 PF00111 2Fe-2S iron-sulfur cluster binding domain CLH39_11665 PF00970 Oxidoreductase FAD-binding domain CLH39_11670 PF04663 Phenol hydroxylase conserved region CLH39_11675 PF02332 Methane/Phenol/Toluene Hydroxylase CLH39_11675 PF04945 YHS domain CLH39_11680 PF02406 MmoB/DmpM family CLH39_11685 PF02332 Methane/Phenol/Toluene Hydroxylase CLH39_11690 PF06099 Phenol hydroxylase subunit CLH39_11695 PF02830 V4R domain CLH39_11695 PF00158 Sigma-54 interaction domain CLH39_11695 PF06505 Activator of aromatic catabolism CLH39_11695 PF02954 Bacterial regulatory protein, Fis family CLH39_11715 PF00005 ABC transporter CLH39_11720 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_11725 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_11730 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLH39_11755 PF07411 Domain of unknown function (DUF1508) CLH39_11760 PF03006 Haemolysin-III related CLH39_11785 PF00959 Phage lysozyme CLH39_11855 PF06114 IrrE N-terminal-like domain CLH39_11910 PF03592 Terminase small subunit CLH39_11910 PF10668 Phage terminase small subunit CLH39_11980 PF01726 LexA DNA binding domain CLH39_11980 PF00717 Peptidase S24-like CLH39_12035 PF00436 Single-strand binding protein family CLH39_12045 PF04381 Putative exonuclease, RdgC CLH39_12070 PF13356 Arm DNA-binding domain CLH39_12070 PF00589 Phage integrase family CLH39_12085 PF07969 Amidohydrolase family CLH39_12090 PF00248 Aldo/keto reductase family CLH39_12095 PF02445 Quinolinate synthetase A protein CLH39_12100 PF00890 FAD binding domain CLH39_12105 PF00072 Response regulator receiver domain CLH39_12105 PF00486 Transcriptional regulatory protein, C terminal CLH39_12110 PF00512 His Kinase A (phospho-acceptor) domain CLH39_12110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_12125 PF00005 ABC transporter CLH39_12125 PF08402 TOBE domain CLH39_12130 PF01266 FAD dependent oxidoreductase CLH39_12140 PF18081 Fanconi anemia-associated nuclease SAP domain CLH39_12140 PF08774 VRR-NUC domain CLH39_12150 PF00892 EamA-like transporter family CLH39_12160 PF01168 Alanine racemase, N-terminal domain CLH39_12170 PF07690 Major Facilitator Superfamily CLH39_12175 PF01494 FAD binding domain CLH39_12180 PF12802 MarR family CLH39_12205 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CLH39_12205 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CLH39_12215 PF00850 Histone deacetylase domain CLH39_12220 PF00005 ABC transporter CLH39_12225 PF02535 ZIP Zinc transporter CLH39_12230 PF01926 50S ribosome-binding GTPase CLH39_12235 PF01926 50S ribosome-binding GTPase CLH39_12240 PF03594 Benzoate membrane transport protein CLH39_12245 PF02426 Muconolactone delta-isomerase CLH39_12250 PF12146 Serine aminopeptidase, S33 CLH39_12255 PF01144 Coenzyme A transferase CLH39_12260 PF01144 Coenzyme A transferase CLH39_12265 PF04444 Catechol dioxygenase N terminus CLH39_12265 PF00775 Dioxygenase CLH39_12270 PF13378 Enolase C-terminal domain-like CLH39_12270 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CLH39_12275 PF03466 LysR substrate binding domain CLH39_12275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_12290 PF00682 HMGL-like CLH39_12290 PF08502 LeuA allosteric (dimerisation) domain CLH39_12295 PF12833 Helix-turn-helix domain CLH39_12295 PF02311 AraC-like ligand binding domain CLH39_12315 PF01022 Bacterial regulatory protein, arsR family CLH39_12320 PF02627 Carboxymuconolactone decarboxylase family CLH39_12345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLH39_12345 PF02770 Acyl-CoA dehydrogenase, middle domain CLH39_12345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLH39_12350 PF00501 AMP-binding enzyme CLH39_12350 PF13193 AMP-binding enzyme C-terminal domain CLH39_12355 PF02515 CoA-transferase family III CLH39_12360 PF02597 ThiS family CLH39_12365 PF14464 Prokaryotic homologs of the JAB domain CLH39_12370 PF00899 ThiF family CLH39_12370 PF00581 Rhodanese-like domain CLH39_12380 PF00891 O-methyltransferase domain CLH39_12405 PF00574 Clp protease CLH39_12410 PF02798 Glutathione S-transferase, N-terminal domain CLH39_12415 PF09297 NADH pyrophosphatase zinc ribbon domain CLH39_12415 PF00293 NUDIX domain CLH39_12435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_12435 PF03466 LysR substrate binding domain CLH39_12440 PF02798 Glutathione S-transferase, N-terminal domain CLH39_12450 PF03033 Glycosyltransferase family 28 N-terminal domain CLH39_12455 PF16859 Tetracyclin repressor-like, C-terminal domain CLH39_12455 PF00440 Bacterial regulatory proteins, tetR family CLH39_12485 PF03466 LysR substrate binding domain CLH39_12485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_12490 PF03060 Nitronate monooxygenase CLH39_12500 PF00042 Globin CLH39_12500 PF00970 Oxidoreductase FAD-binding domain CLH39_12500 PF00175 Oxidoreductase NAD-binding domain CLH39_12505 PF14552 Tautomerase enzyme CLH39_12515 PF13533 Biotin-lipoyl like CLH39_12525 PF04632 Fusaric acid resistance protein family CLH39_12530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_12530 PF03466 LysR substrate binding domain CLH39_12540 PF08543 Phosphomethylpyrimidine kinase CLH39_12545 PF07690 Major Facilitator Superfamily CLH39_12550 PF12833 Helix-turn-helix domain CLH39_12550 PF12852 Cupin CLH39_12555 PF00072 Response regulator receiver domain CLH39_12555 PF00486 Transcriptional regulatory protein, C terminal CLH39_12560 PF13426 PAS domain CLH39_12560 PF00512 His Kinase A (phospho-acceptor) domain CLH39_12560 PF00072 Response regulator receiver domain CLH39_12560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_12560 PF08448 PAS fold CLH39_12570 PF01970 Tripartite tricarboxylate transporter TctA family CLH39_12575 PF01966 HD domain CLH39_12580 PF07690 Major Facilitator Superfamily CLH39_12585 PF07690 Major Facilitator Superfamily CLH39_12590 PF03466 LysR substrate binding domain CLH39_12590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_12595 PF01502 Phosphoribosyl-AMP cyclohydrolase CLH39_12600 PF01475 Ferric uptake regulator family CLH39_12605 PF01979 Amidohydrolase family CLH39_12615 PF01809 Putative membrane protein insertion efficiency factor CLH39_12620 PF02649 Type I GTP cyclohydrolase folE2 CLH39_12625 PF02492 CobW/HypB/UreG, nucleotide-binding domain CLH39_12625 PF07683 Cobalamin synthesis protein cobW C-terminal domain CLH39_12630 PF08279 HTH domain CLH39_12630 PF13280 WYL domain CLH39_12640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLH39_12640 PF18158 Adaptive response protein AidB N-terminal domain CLH39_12640 PF02770 Acyl-CoA dehydrogenase, middle domain CLH39_12650 PF01717 Cobalamin-independent synthase, Catalytic domain CLH39_12660 PF01717 Cobalamin-independent synthase, Catalytic domain CLH39_12660 PF08267 Cobalamin-independent synthase, N-terminal domain CLH39_12665 PF03466 LysR substrate binding domain CLH39_12665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_12670 PF00872 Transposase, Mutator family CLH39_12675 PF07660 Secretin and TonB N terminus short domain CLH39_12675 PF07715 TonB-dependent Receptor Plug Domain CLH39_12675 PF00593 TonB dependent receptor CLH39_12695 PF00958 GMP synthase C terminal domain CLH39_12695 PF02540 NAD synthase CLH39_12695 PF00117 Glutamine amidotransferase class-I CLH39_12715 PF00478 IMP dehydrogenase / GMP reductase domain CLH39_12715 PF00571 CBS domain CLH39_12720 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CLH39_12720 PF02769 AIR synthase related protein, C-terminal domain CLH39_12720 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CLH39_12725 PF03449 Transcription elongation factor, N-terminal CLH39_12725 PF01272 Transcription elongation factor, GreA/GreB, C-term CLH39_12730 PF02811 PHP domain CLH39_12740 PF03772 Competence protein CLH39_12740 PF00753 Metallo-beta-lactamase superfamily CLH39_12745 PF01026 TatD related DNase CLH39_12750 PF00005 ABC transporter CLH39_12755 PF12704 MacB-like periplasmic core domain CLH39_12755 PF02687 FtsX-like permease family CLH39_12765 PF02272 DHHA1 domain CLH39_12765 PF01368 DHH family CLH39_12765 PF17768 RecJ OB domain CLH39_12785 PF05860 haemagglutination activity domain CLH39_12785 PF13018 Extended Signal Peptide of Type V secretion system CLH39_12785 PF13332 Hemagglutinin repeat CLH39_12785 PF04829 Pre-toxin domain with VENN motif CLH39_12790 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CLH39_12790 PF17287 POTRA domain CLH39_12790 PF08479 POTRA domain, ShlB-type CLH39_12800 PF01758 Sodium Bile acid symporter family CLH39_12805 PF00892 EamA-like transporter family CLH39_12810 PF01176 Translation initiation factor 1A / IF-1 CLH39_12815 PF02203 Tar ligand binding domain homologue CLH39_12815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLH39_12815 PF00672 HAMP domain CLH39_12825 PF00106 short chain dehydrogenase CLH39_12830 PF01336 OB-fold nucleic acid binding domain CLH39_12830 PF00152 tRNA synthetases class II (D, K and N) CLH39_12835 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_12840 PF02142 MGS-like domain CLH39_12845 PF01521 Iron-sulphur cluster biosynthesis CLH39_12850 PF01592 NifU-like N terminal domain CLH39_12855 PF00266 Aminotransferase class-V CLH39_12860 PF02082 Transcriptional regulator CLH39_12865 PF01451 Low molecular weight phosphotyrosine protein phosphatase CLH39_12870 PF17757 UvrB interaction domain CLH39_12870 PF00271 Helicase conserved C-terminal domain CLH39_12870 PF12344 Ultra-violet resistance protein B CLH39_12870 PF02151 UvrB/uvrC motif CLH39_12870 PF04851 Type III restriction enzyme, res subunit CLH39_12875 PF00155 Aminotransferase class I and II CLH39_12880 PF13302 Acetyltransferase (GNAT) domain CLH39_12885 PF00717 Peptidase S24-like CLH39_12885 PF01726 LexA DNA binding domain CLH39_12890 PF02190 ATP-dependent protease La (LON) substrate-binding domain CLH39_12890 PF00004 ATPase family associated with various cellular activities (AAA) CLH39_12890 PF05362 Lon protease (S16) C-terminal proteolytic domain CLH39_12895 PF10431 C-terminal, D2-small domain, of ClpB protein CLH39_12895 PF06689 ClpX C4-type zinc finger CLH39_12895 PF07724 AAA domain (Cdc48 subfamily) CLH39_12900 PF00574 Clp protease CLH39_12905 PF05698 Bacterial trigger factor protein (TF) C-terminus CLH39_12905 PF05697 Bacterial trigger factor protein (TF) CLH39_12905 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLH39_12910 PF02515 CoA-transferase family III CLH39_12920 PF07690 Major Facilitator Superfamily CLH39_12925 PF00376 MerR family regulatory protein CLH39_12925 PF09278 MerR, DNA binding CLH39_12965 PF03600 Citrate transporter CLH39_12965 PF02080 TrkA-C domain CLH39_12975 PF02311 AraC-like ligand binding domain CLH39_12975 PF12833 Helix-turn-helix domain CLH39_12990 PF14602 Hexapeptide repeat of succinyl-transferase CLH39_12990 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CLH39_12990 PF00132 Bacterial transferase hexapeptide (six repeats) CLH39_12995 PF01546 Peptidase family M20/M25/M40 CLH39_12995 PF07687 Peptidase dimerisation domain CLH39_13000 PF05175 Methyltransferase small domain CLH39_13005 PF12848 ABC transporter CLH39_13005 PF00005 ABC transporter CLH39_13015 PF07690 Major Facilitator Superfamily CLH39_13030 PF13533 Biotin-lipoyl like CLH39_13035 PF02909 Tetracyclin repressor-like, C-terminal domain CLH39_13035 PF00440 Bacterial regulatory proteins, tetR family CLH39_13060 PF13361 UvrD-like helicase C-terminal domain CLH39_13060 PF00580 UvrD/REP helicase N-terminal domain CLH39_13070 PF01029 NusB family CLH39_13070 PF01189 16S rRNA methyltransferase RsmB/F CLH39_13075 PF00551 Formyl transferase CLH39_13080 PF06574 FAD synthetase CLH39_13080 PF01687 Riboflavin kinase CLH39_13085 PF08264 Anticodon-binding domain of tRNA CLH39_13085 PF06827 Zinc finger found in FPG and IleRS CLH39_13085 PF00133 tRNA synthetases class I (I, L, M and V) CLH39_13090 PF01252 Signal peptidase (SPase) II CLH39_13095 PF02441 Flavoprotein CLH39_13095 PF04127 DNA / pantothenate metabolism flavoprotein CLH39_13100 PF00692 dUTPase CLH39_13105 PF05971 RNA methyltransferase CLH39_13115 PF00106 short chain dehydrogenase CLH39_13135 PF00005 ABC transporter CLH39_13140 PF00005 ABC transporter CLH39_13140 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLH39_13145 PF11862 Domain of unknown function (DUF3382) CLH39_13145 PF02653 Branched-chain amino acid transport system / permease component CLH39_13150 PF02653 Branched-chain amino acid transport system / permease component CLH39_13155 PF13458 Periplasmic binding protein CLH39_13160 PF00171 Aldehyde dehydrogenase family CLH39_13160 PF14850 DNA-binding domain of Proline dehydrogenase CLH39_13160 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CLH39_13160 PF01619 Proline dehydrogenase CLH39_13170 PF02470 MlaD protein CLH39_13175 PF04403 Paraquat-inducible protein A CLH39_13180 PF00004 ATPase family associated with various cellular activities (AAA) CLH39_13180 PF10431 C-terminal, D2-small domain, of ClpB protein CLH39_13180 PF17871 AAA lid domain CLH39_13180 PF07724 AAA domain (Cdc48 subfamily) CLH39_13180 PF02861 Clp amino terminal domain, pathogenicity island component CLH39_13185 PF02617 ATP-dependent Clp protease adaptor protein ClpS CLH39_13190 PF00313 'Cold-shock' DNA-binding domain CLH39_13200 PF00108 Thiolase, N-terminal domain CLH39_13200 PF02803 Thiolase, C-terminal domain CLH39_13205 PF01569 PAP2 superfamily CLH39_13210 PF00210 Ferritin-like domain CLH39_13215 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CLH39_13215 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CLH39_13220 PF02601 Exonuclease VII, large subunit CLH39_13220 PF13742 OB-fold nucleic acid binding domain CLH39_13225 PF01618 MotA/TolQ/ExbB proton channel family CLH39_13230 PF02472 Biopolymer transport protein ExbD/TolR CLH39_13235 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CLH39_13240 PF03966 Trm112p-like protein CLH39_13245 PF02348 Cytidylyltransferase CLH39_13250 PF05191 Adenylate kinase, active site lid CLH39_13255 PF00106 short chain dehydrogenase CLH39_13260 PF03023 Lipid II flippase MurJ CLH39_13265 PF01649 Ribosomal protein S20 CLH39_13270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLH39_13270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLH39_13280 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLH39_13280 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLH39_13285 PF00486 Transcriptional regulatory protein, C terminal CLH39_13285 PF00072 Response regulator receiver domain CLH39_13290 PF00512 His Kinase A (phospho-acceptor) domain CLH39_13290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_13290 PF02702 Osmosensitive K+ channel His kinase sensor domain CLH39_13290 PF13493 Domain of unknown function (DUF4118) CLH39_13290 PF13492 GAF domain CLH39_13300 PF02669 K+-transporting ATPase, c chain CLH39_13305 PF03814 Potassium-transporting ATPase A subunit CLH39_13315 PF00117 Glutamine amidotransferase class-I CLH39_13315 PF00958 GMP synthase C terminal domain CLH39_13315 PF02540 NAD synthase CLH39_13320 PF00356 Bacterial regulatory proteins, lacI family CLH39_13325 PF01547 Bacterial extracellular solute-binding protein CLH39_13335 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_13340 PF00005 ABC transporter CLH39_13340 PF12857 TOBE-like domain CLH39_13345 PF00149 Calcineurin-like phosphoesterase CLH39_13350 PF00764 Arginosuccinate synthase CLH39_13360 PF04304 Protein of unknown function (DUF454) CLH39_13365 PF00293 NUDIX domain CLH39_13375 PF01053 Cys/Met metabolism PLP-dependent enzyme CLH39_13380 PF13404 AsnC-type helix-turn-helix domain CLH39_13380 PF01037 Lrp/AsnC ligand binding domain CLH39_13395 PF00990 Diguanylate cyclase, GGDEF domain CLH39_13445 PF00959 Phage lysozyme CLH39_13535 PF00717 Peptidase S24-like CLH39_13535 PF01726 LexA DNA binding domain CLH39_13545 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CLH39_13550 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system CLH39_13575 PF01435 Peptidase family M48 CLH39_13585 PF00583 Acetyltransferase (GNAT) family CLH39_13595 PF00893 Small Multidrug Resistance protein CLH39_13600 PF02580 D-Tyr-tRNA(Tyr) deacylase CLH39_13615 PF00571 CBS domain CLH39_13615 PF03448 MgtE intracellular N domain CLH39_13615 PF01769 Divalent cation transporter CLH39_13620 PF00072 Response regulator receiver domain CLH39_13620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_13620 PF01627 Hpt domain CLH39_13620 PF00512 His Kinase A (phospho-acceptor) domain CLH39_13625 PF00072 Response regulator receiver domain CLH39_13630 PF01381 Helix-turn-helix CLH39_13645 PF08946 Osmosensory transporter coiled coil CLH39_13645 PF00083 Sugar (and other) transporter CLH39_13650 PF00924 Mechanosensitive ion channel CLH39_13650 PF12795 Mechanosensitive ion channel porin domain CLH39_13650 PF12794 Mechanosensitive ion channel inner membrane domain 1 CLH39_13660 PF12794 Mechanosensitive ion channel inner membrane domain 1 CLH39_13660 PF00924 Mechanosensitive ion channel CLH39_13660 PF12795 Mechanosensitive ion channel porin domain CLH39_13665 PF01593 Flavin containing amine oxidoreductase CLH39_13680 PF00866 Ring hydroxylating beta subunit CLH39_13685 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CLH39_13685 PF00355 Rieske [2Fe-2S] domain CLH39_13700 PF04303 PrpF protein CLH39_13710 PF00694 Aconitase C-terminal domain CLH39_13710 PF00330 Aconitase family (aconitate hydratase) CLH39_13715 PF02464 Competence-damaged protein CLH39_13715 PF18146 Damage-inducible protein CinA KH domain CLH39_13715 PF00994 Probable molybdopterin binding domain CLH39_13720 PF12802 MarR family CLH39_13730 PF01645 Conserved region in glutamate synthase CLH39_13740 PF02630 SCO1/SenC CLH39_13760 PF00860 Permease family CLH39_13765 PF12805 FUSC-like inner membrane protein yccS CLH39_13770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLH39_13770 PF00529 HlyD membrane-fusion protein of T1SS CLH39_13780 PF00999 Sodium/hydrogen exchanger family CLH39_13790 PF01914 MarC family integral membrane protein CLH39_13815 PF00593 TonB dependent receptor CLH39_13815 PF07715 TonB-dependent Receptor Plug Domain CLH39_13820 PF00149 Calcineurin-like phosphoesterase CLH39_13830 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLH39_13835 PF00034 Cytochrome c CLH39_13845 PF00115 Cytochrome C and Quinol oxidase polypeptide I CLH39_13850 PF00072 Response regulator receiver domain CLH39_13850 PF00486 Transcriptional regulatory protein, C terminal CLH39_13855 PF00512 His Kinase A (phospho-acceptor) domain CLH39_13855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_13855 PF08521 Two-component sensor kinase N-terminal CLH39_13860 PF00313 'Cold-shock' DNA-binding domain CLH39_13885 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding CLH39_13885 PF10518 TAT (twin-arginine translocation) pathway signal sequence CLH39_13885 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLH39_13925 PF00230 Major intrinsic protein CLH39_13930 PF07007 Lysozyme inhibitor LprI CLH39_13955 PF00324 Amino acid permease CLH39_13965 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_13975 PF03150 Di-haem cytochrome c peroxidase CLH39_13980 PF07715 TonB-dependent Receptor Plug Domain CLH39_13995 PF03831 PhnA domain CLH39_13995 PF08274 PhnA Zinc-Ribbon CLH39_14005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_14005 PF03466 LysR substrate binding domain CLH39_14015 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_14020 PF00005 ABC transporter CLH39_14025 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CLH39_14030 PF01381 Helix-turn-helix CLH39_14060 PF00589 Phage integrase family CLH39_14080 PF01799 [2Fe-2S] binding domain CLH39_14080 PF00111 2Fe-2S iron-sulfur cluster binding domain CLH39_14090 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_14095 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CLH39_14095 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CLH39_14105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLH39_14105 PF08447 PAS fold CLH39_14115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLH39_14115 PF08447 PAS fold CLH39_14120 PF04286 Protein of unknown function (DUF445) CLH39_14140 PF03781 Sulfatase-modifying factor enzyme 1 CLH39_14150 PF00005 ABC transporter CLH39_14185 PF00669 Bacterial flagellin N-terminal helical region CLH39_14185 PF00700 Bacterial flagellin C-terminal helical region CLH39_14185 PF08884 Flagellin D3 domain CLH39_14190 PF04545 Sigma-70, region 4 CLH39_14190 PF04539 Sigma-70 region 3 CLH39_14190 PF04542 Sigma-70 region 2 CLH39_14195 PF03646 FlaG protein CLH39_14200 PF02465 Flagellar hook-associated protein 2 N-terminus CLH39_14200 PF07195 Flagellar hook-associated protein 2 C-terminus CLH39_14205 PF02561 Flagellar protein FliS CLH39_14220 PF01312 FlhB HrpN YscU SpaS Family CLH39_14225 PF02049 Flagellar hook-basal body complex protein FliE CLH39_14230 PF08345 Flagellar M-ring protein C-terminal CLH39_14230 PF01514 Secretory protein of YscJ/FliF family CLH39_14235 PF14841 FliG middle domain CLH39_14235 PF14842 FliG N-terminal domain CLH39_14235 PF01706 FliG C-terminal domain CLH39_14245 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLH39_14245 PF18269 T3SS EscN ATPase C-terminal domain CLH39_14260 PF03748 Flagellar basal body-associated protein FliL CLH39_14265 PF02154 Flagellar motor switch protein FliM CLH39_14265 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CLH39_14270 PF16973 Flagellar motor switch protein FliN N-terminal CLH39_14270 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CLH39_14275 PF04347 Flagellar biosynthesis protein, FliO CLH39_14280 PF00813 FliP family CLH39_14285 PF01313 Bacterial export proteins, family 3 CLH39_14290 PF01311 Bacterial export proteins, family 1 CLH39_14295 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLH39_14295 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLH39_14295 PF14579 Helix-hairpin-helix motif CLH39_14295 PF02811 PHP domain CLH39_14295 PF00929 Exonuclease CLH39_14305 PF02203 Tar ligand binding domain homologue CLH39_14305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLH39_14305 PF00672 HAMP domain CLH39_14315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLH39_14315 PF02203 Tar ligand binding domain homologue CLH39_14315 PF00672 HAMP domain CLH39_14320 PF00669 Bacterial flagellin N-terminal helical region CLH39_14330 PF10135 Rod binding protein CLH39_14330 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CLH39_14335 PF02119 Flagellar P-ring protein CLH39_14340 PF02107 Flagellar L-ring protein CLH39_14345 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLH39_14345 PF00460 Flagella basal body rod protein CLH39_14350 PF00460 Flagella basal body rod protein CLH39_14350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLH39_14355 PF07559 Flagellar basal body protein FlaE CLH39_14355 PF00460 Flagella basal body rod protein CLH39_14355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLH39_14360 PF03963 Flagellar hook capping protein - N-terminal region CLH39_14360 PF13861 FlgD Tudor-like domain CLH39_14360 PF13860 FlgD Ig-like domain CLH39_14365 PF00460 Flagella basal body rod protein CLH39_14365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLH39_14380 PF04316 Anti-sigma-28 factor, FlgM CLH39_14390 PF00448 SRP54-type protein, GTPase domain CLH39_14395 PF00771 FHIPEP family CLH39_14400 PF01312 FlhB HrpN YscU SpaS Family CLH39_14405 PF04344 Chemotaxis phosphatase, CheZ CLH39_14410 PF00072 Response regulator receiver domain CLH39_14415 PF01339 CheB methylesterase CLH39_14415 PF00072 Response regulator receiver domain CLH39_14420 PF03705 CheR methyltransferase, all-alpha domain CLH39_14420 PF01739 CheR methyltransferase, SAM binding domain CLH39_14425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLH39_14425 PF02203 Tar ligand binding domain homologue CLH39_14425 PF00672 HAMP domain CLH39_14430 PF01584 CheW-like domain CLH39_14435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_14435 PF02895 Signal transducing histidine kinase, homodimeric domain CLH39_14435 PF09078 CheY binding CLH39_14435 PF01584 CheW-like domain CLH39_14435 PF01627 Hpt domain CLH39_14440 PF13677 Membrane MotB of proton-channel complex MotA/MotB CLH39_14440 PF00691 OmpA family CLH39_14445 PF01618 MotA/TolQ/ExbB proton channel family CLH39_14450 PF05280 Flagellar transcriptional activator (FlhC) CLH39_14455 PF05247 Flagellar transcriptional activator (FlhD) CLH39_14460 PF00877 NlpC/P60 family CLH39_14465 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CLH39_14465 PF01266 FAD dependent oxidoreductase CLH39_14470 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLH39_14470 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLH39_14475 PF05154 TM2 domain CLH39_14480 PF00884 Sulfatase CLH39_14485 PF03781 Sulfatase-modifying factor enzyme 1 CLH39_14490 PF00916 Sulfate permease family CLH39_14490 PF01740 STAS domain CLH39_14495 PF00403 Heavy-metal-associated domain CLH39_14500 PF13411 MerR HTH family regulatory protein CLH39_14510 PF04143 Sulphur transport CLH39_14520 PF00753 Metallo-beta-lactamase superfamily CLH39_14525 PF04247 Invasion gene expression up-regulator, SirB CLH39_14530 PF03601 Conserved hypothetical protein 698 CLH39_14535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_14535 PF03466 LysR substrate binding domain CLH39_14555 PF13609 Gram-negative porin CLH39_14570 PF02690 Na+/Pi-cotransporter CLH39_14575 PF01594 AI-2E family transporter CLH39_14610 PF01565 FAD binding domain CLH39_14615 PF02913 FAD linked oxidases, C-terminal domain CLH39_14615 PF01565 FAD binding domain CLH39_14620 PF00392 Bacterial regulatory proteins, gntR family CLH39_14620 PF07729 FCD domain CLH39_14665 PF00575 S1 RNA binding domain CLH39_14665 PF10150 Ribonuclease E/G family CLH39_14680 PF00005 ABC transporter CLH39_14680 PF00664 ABC transporter transmembrane region CLH39_14700 PF00534 Glycosyl transferases group 1 CLH39_14700 PF13439 Glycosyltransferase Family 4 CLH39_14710 PF00535 Glycosyl transferase family 2 CLH39_14715 PF01522 Polysaccharide deacetylase CLH39_14720 PF13439 Glycosyltransferase Family 4 CLH39_14720 PF00534 Glycosyl transferases group 1 CLH39_14725 PF02811 PHP domain CLH39_14725 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLH39_14725 PF01336 OB-fold nucleic acid binding domain CLH39_14725 PF14579 Helix-hairpin-helix motif CLH39_14725 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLH39_14730 PF00270 DEAD/DEAH box helicase CLH39_14730 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CLH39_14730 PF00271 Helicase conserved C-terminal domain CLH39_14730 PF04408 Helicase associated domain (HA2) CLH39_14730 PF11898 Domain of unknown function (DUF3418) CLH39_14735 PF00696 Amino acid kinase family CLH39_14735 PF00583 Acetyltransferase (GNAT) family CLH39_14740 PF04362 Bacterial Fe(2+) trafficking CLH39_14745 PF00360 Phytochrome region CLH39_14745 PF01590 GAF domain CLH39_14745 PF00563 EAL domain CLH39_14745 PF00990 Diguanylate cyclase, GGDEF domain CLH39_14750 PF01895 PhoU domain CLH39_14755 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CLH39_14760 PF03960 ArsC family CLH39_14765 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_14770 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_14775 PF08402 TOBE domain CLH39_14775 PF00005 ABC transporter CLH39_14780 PF13416 Bacterial extracellular solute-binding protein CLH39_14795 PF18073 Rubredoxin metal binding domain CLH39_14805 PF01168 Alanine racemase, N-terminal domain CLH39_14805 PF00842 Alanine racemase, C-terminal domain CLH39_14820 PF01593 Flavin containing amine oxidoreductase CLH39_14825 PF13302 Acetyltransferase (GNAT) domain CLH39_14830 PF00291 Pyridoxal-phosphate dependent enzyme CLH39_14830 PF14821 Threonine synthase N terminus CLH39_14835 PF00742 Homoserine dehydrogenase CLH39_14835 PF01842 ACT domain CLH39_14835 PF03447 Homoserine dehydrogenase, NAD binding domain CLH39_14840 PF00155 Aminotransferase class I and II CLH39_14845 PF04430 Protein of unknown function (DUF498/DUF598) CLH39_14850 PF00578 AhpC/TSA family CLH39_14855 PF02562 PhoH-like protein CLH39_14855 PF13638 PIN domain CLH39_14860 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CLH39_14865 PF13593 SBF-like CPA transporter family (DUF4137) CLH39_14870 PF00772 DnaB-like helicase N terminal domain CLH39_14870 PF03796 DnaB-like helicase C terminal domain CLH39_14875 PF01281 Ribosomal protein L9, N-terminal domain CLH39_14875 PF03948 Ribosomal protein L9, C-terminal domain CLH39_14880 PF01084 Ribosomal protein S18 CLH39_14890 PF01250 Ribosomal protein S6 CLH39_14895 PF02649 Type I GTP cyclohydrolase folE2 CLH39_14900 PF02780 Transketolase, C-terminal domain CLH39_14900 PF02779 Transketolase, pyrimidine binding domain CLH39_14900 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CLH39_14905 PF00348 Polyprenyl synthetase CLH39_14910 PF02609 Exonuclease VII small subunit CLH39_14915 PF00581 Rhodanese-like domain CLH39_14925 PF01435 Peptidase family M48 CLH39_14945 PF17831 Pyruvate dehydrogenase E1 component middle domain CLH39_14945 PF00456 Transketolase, thiamine diphosphate binding domain CLH39_14960 PF00476 DNA polymerase family A CLH39_14960 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CLH39_14960 PF01612 3'-5' exonuclease CLH39_14960 PF01367 5'-3' exonuclease, C-terminal SAM fold CLH39_14965 PF03641 Possible lysine decarboxylase CLH39_14970 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLH39_14975 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_14980 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_14990 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLH39_14995 PF03144 Elongation factor Tu domain 2 CLH39_14995 PF00009 Elongation factor Tu GTP binding domain CLH39_14995 PF00679 Elongation factor G C-terminus CLH39_15000 PF16198 tRNA pseudouridylate synthase B C-terminal domain CLH39_15000 PF01509 TruB family pseudouridylate synthase (N terminal domain) CLH39_15005 PF02033 Ribosome-binding factor A CLH39_15010 PF11987 Translation-initiation factor 2 CLH39_15010 PF08364 Bacterial translation initiation factor IF-2 associated region CLH39_15010 PF00009 Elongation factor Tu GTP binding domain CLH39_15010 PF04760 Translation initiation factor IF-2, N-terminal region CLH39_15015 PF13184 NusA-like KH domain CLH39_15015 PF08529 NusA N-terminal domain CLH39_15020 PF17384 RimP C-terminal SH3 domain CLH39_15020 PF02576 RimP N-terminal domain CLH39_15030 PF00849 RNA pseudouridylate synthase CLH39_15030 PF01479 S4 domain CLH39_15035 PF04079 Segregation and condensation complex subunit ScpB CLH39_15080 PF07879 PHB/PHA accumulation regulator DNA-binding domain CLH39_15080 PF05233 PHB accumulation regulatory domain CLH39_15085 PF00106 short chain dehydrogenase CLH39_15090 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CLH39_15095 PF02578 Multi-copper polyphenol oxidoreductase laccase CLH39_15100 PF01479 S4 domain CLH39_15100 PF00849 RNA pseudouridylate synthase CLH39_15105 PF13525 Outer membrane lipoprotein CLH39_15110 PF08361 MAATS-type transcriptional repressor, C-terminal region CLH39_15110 PF00440 Bacterial regulatory proteins, tetR family CLH39_15115 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_15125 PF03480 Bacterial extracellular solute-binding protein, family 7 CLH39_15130 PF01266 FAD dependent oxidoreductase CLH39_15130 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CLH39_15135 PF06249 Ethanolamine utilisation protein EutQ CLH39_15145 PF01638 HxlR-like helix-turn-helix CLH39_15155 PF13307 Helicase C-terminal domain CLH39_15155 PF04851 Type III restriction enzyme, res subunit CLH39_15160 PF09371 Tex-like protein N-terminal domain CLH39_15160 PF00575 S1 RNA binding domain CLH39_15160 PF17674 HHH domain CLH39_15160 PF16921 Tex protein YqgF-like domain CLH39_15170 PF00132 Bacterial transferase hexapeptide (six repeats) CLH39_15175 PF00579 tRNA synthetases class I (W and Y) CLH39_15180 PF03969 AFG1-like ATPase CLH39_15185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLH39_15185 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLH39_15190 PF02817 e3 binding domain CLH39_15190 PF00364 Biotin-requiring enzyme CLH39_15190 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CLH39_15195 PF02779 Transketolase, pyrimidine binding domain CLH39_15195 PF16870 2-oxoglutarate dehydrogenase C-terminal CLH39_15195 PF00676 Dehydrogenase E1 component CLH39_15195 PF16078 2-oxoglutarate dehydrogenase N-terminus CLH39_15200 PF00390 Malic enzyme, N-terminal domain CLH39_15200 PF03949 Malic enzyme, NAD binding domain CLH39_15200 PF01515 Phosphate acetyl/butaryl transferase CLH39_15210 PF00654 Voltage gated chloride channel CLH39_15215 PF02652 L-lactate permease CLH39_15220 PF07729 FCD domain CLH39_15220 PF00392 Bacterial regulatory proteins, gntR family CLH39_15225 PF00285 Citrate synthase, C-terminal domain CLH39_15230 PF03937 Flavinator of succinate dehydrogenase CLH39_15235 PF13085 2Fe-2S iron-sulfur cluster binding domain CLH39_15240 PF00890 FAD binding domain CLH39_15240 PF02910 Fumarate reductase flavoprotein C-term CLH39_15250 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CLH39_15255 PF00392 Bacterial regulatory proteins, gntR family CLH39_15255 PF07702 UTRA domain CLH39_15260 PF00056 lactate/malate dehydrogenase, NAD binding domain CLH39_15260 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CLH39_15265 PF00593 TonB dependent receptor CLH39_15265 PF07660 Secretin and TonB N terminus short domain CLH39_15265 PF07715 TonB-dependent Receptor Plug Domain CLH39_15280 PF02954 Bacterial regulatory protein, Fis family CLH39_15280 PF06506 Propionate catabolism activator CLH39_15280 PF00158 Sigma-54 interaction domain CLH39_15290 PF00285 Citrate synthase, C-terminal domain CLH39_15305 PF06434 Aconitate hydratase 2 N-terminus CLH39_15305 PF00330 Aconitase family (aconitate hydratase) CLH39_15305 PF11791 Aconitate B N-terminal domain CLH39_15310 PF03480 Bacterial extracellular solute-binding protein, family 7 CLH39_15320 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_15320 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_15335 PF01132 Elongation factor P (EF-P) OB domain CLH39_15335 PF08207 Elongation factor P (EF-P) KOW-like domain CLH39_15335 PF09285 Elongation factor P, C-terminal CLH39_15350 PF00501 AMP-binding enzyme CLH39_15350 PF13193 AMP-binding enzyme C-terminal domain CLH39_15355 PF00108 Thiolase, N-terminal domain CLH39_15355 PF02803 Thiolase, C-terminal domain CLH39_15365 PF03480 Bacterial extracellular solute-binding protein, family 7 CLH39_15370 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_15385 PF00465 Iron-containing alcohol dehydrogenase CLH39_15390 PF00171 Aldehyde dehydrogenase family CLH39_15395 PF02954 Bacterial regulatory protein, Fis family CLH39_15395 PF00158 Sigma-54 interaction domain CLH39_15395 PF01590 GAF domain CLH39_15405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLH39_15405 PF00005 ABC transporter CLH39_15410 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_15410 PF12911 N-terminal TM domain of oligopeptide transport permease C CLH39_15415 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_15430 PF02770 Acyl-CoA dehydrogenase, middle domain CLH39_15430 PF18158 Adaptive response protein AidB N-terminal domain CLH39_15430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLH39_15435 PF01544 CorA-like Mg2+ transporter protein CLH39_15440 PF04241 Protein of unknown function (DUF423) CLH39_15445 PF00962 Adenosine/AMP deaminase CLH39_15450 PF02245 Methylpurine-DNA glycosylase (MPG) CLH39_15465 PF03358 NADPH-dependent FMN reductase CLH39_15470 PF13409 Glutathione S-transferase, N-terminal domain CLH39_15475 PF01070 FMN-dependent dehydrogenase CLH39_15490 PF00593 TonB dependent receptor CLH39_15490 PF07715 TonB-dependent Receptor Plug Domain CLH39_15495 PF00072 Response regulator receiver domain CLH39_15495 PF00486 Transcriptional regulatory protein, C terminal CLH39_15500 PF00512 His Kinase A (phospho-acceptor) domain CLH39_15500 PF00672 HAMP domain CLH39_15500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_15515 PF02233 NAD(P) transhydrogenase beta subunit CLH39_15520 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CLH39_15525 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CLH39_15525 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CLH39_15530 PF00005 ABC transporter CLH39_15530 PF08402 TOBE domain CLH39_15535 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_15545 PF00132 Bacterial transferase hexapeptide (six repeats) CLH39_15555 PF00795 Carbon-nitrogen hydrolase CLH39_15560 PF14525 AraC-binding-like domain CLH39_15570 PF01145 SPFH domain / Band 7 family CLH39_15585 PF00696 Amino acid kinase family CLH39_15585 PF01842 ACT domain CLH39_15585 PF13840 ACT domain CLH39_15590 PF01171 PP-loop family CLH39_15590 PF09179 TilS substrate binding domain CLH39_15595 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CLH39_15605 PF09190 DALR domain CLH39_15605 PF01406 tRNA synthetases class I (C) catalytic domain CLH39_15615 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CLH39_15620 PF00149 Calcineurin-like phosphoesterase CLH39_15630 PF02673 Bacitracin resistance protein BacA CLH39_15635 PF03471 Transporter associated domain CLH39_15635 PF03741 Integral membrane protein TerC family CLH39_15640 PF00459 Inositol monophosphatase family CLH39_15645 PF00588 SpoU rRNA Methylase family CLH39_15655 PF02667 Short chain fatty acid transporter CLH39_15660 PF01425 Amidase CLH39_15665 PF16957 Malonate decarboxylase, alpha subunit, transporter CLH39_15670 PF06857 Malonate decarboxylase delta subunit (MdcD) CLH39_15675 PF01039 Carboxyl transferase domain CLH39_15690 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CLH39_15695 PF00698 Acyl transferase domain CLH39_15695 PF00550 Phosphopantetheine attachment site CLH39_15695 PF14765 Polyketide synthase dehydratase CLH39_15695 PF08240 Alcohol dehydrogenase GroES-like domain CLH39_15695 PF00107 Zinc-binding dehydrogenase CLH39_15695 PF16197 Ketoacyl-synthetase C-terminal extension CLH39_15695 PF00109 Beta-ketoacyl synthase, N-terminal domain CLH39_15695 PF02801 Beta-ketoacyl synthase, C-terminal domain CLH39_15695 PF08659 KR domain CLH39_15700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_15700 PF03466 LysR substrate binding domain CLH39_15705 PF05552 Conserved TM helix CLH39_15705 PF00924 Mechanosensitive ion channel CLH39_15715 PF00296 Luciferase-like monooxygenase CLH39_15720 PF03466 LysR substrate binding domain CLH39_15720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_15725 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_15735 PF00664 ABC transporter transmembrane region CLH39_15735 PF00005 ABC transporter CLH39_15740 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CLH39_15745 PF02321 Outer membrane efflux protein CLH39_15750 PF02687 FtsX-like permease family CLH39_15750 PF00005 ABC transporter CLH39_15750 PF12704 MacB-like periplasmic core domain CLH39_15755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLH39_15760 PF07715 TonB-dependent Receptor Plug Domain CLH39_15760 PF00593 TonB dependent receptor CLH39_15770 PF00488 MutS domain V CLH39_15770 PF01624 MutS domain I CLH39_15770 PF05190 MutS family domain IV CLH39_15770 PF05192 MutS domain III CLH39_15770 PF05188 MutS domain II CLH39_15775 PF08007 Cupin superfamily protein CLH39_15785 PF03594 Benzoate membrane transport protein CLH39_15790 PF00067 Cytochrome P450 CLH39_15795 PF00155 Aminotransferase class I and II CLH39_15800 PF00202 Aminotransferase class-III CLH39_15820 PF06804 NlpB/DapX lipoprotein CLH39_15825 PF00701 Dihydrodipicolinate synthetase family CLH39_15830 PF02163 Peptidase family M50 CLH39_15835 PF01300 Telomere recombination CLH39_15850 PF13396 Phospholipase_D-nuclease N-terminal CLH39_15850 PF13091 PLD-like domain CLH39_15855 PF07848 PaaX-like protein CLH39_15855 PF08223 PaaX-like protein C-terminal domain CLH39_15860 PF00474 Sodium:solute symporter family CLH39_15880 PF03466 LysR substrate binding domain CLH39_15880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_15890 PF00884 Sulfatase CLH39_15905 PF04239 Protein of unknown function (DUF421) CLH39_15910 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLH39_15910 PF00034 Cytochrome c CLH39_15930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_15930 PF03466 LysR substrate binding domain CLH39_15945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_15950 PF00072 Response regulator receiver domain CLH39_15950 PF00486 Transcriptional regulatory protein, C terminal CLH39_15965 PF00501 AMP-binding enzyme CLH39_15965 PF13193 AMP-binding enzyme C-terminal domain CLH39_15970 PF00005 ABC transporter CLH39_15975 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_15980 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_15985 PF12849 PBP superfamily domain CLH39_15990 PF02503 Polyphosphate kinase middle domain CLH39_15990 PF17941 Polyphosphate kinase C-terminal domain 1 CLH39_15990 PF13090 Polyphosphate kinase C-terminal domain 2 CLH39_15990 PF13089 Polyphosphate kinase N-terminal domain CLH39_15995 PF02541 Ppx/GppA phosphatase family CLH39_16005 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLH39_16005 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLH39_16005 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLH39_16005 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLH39_16010 PF00809 Pterin binding enzyme CLH39_16015 PF06480 FtsH Extracellular CLH39_16015 PF17862 AAA+ lid domain CLH39_16015 PF00004 ATPase family associated with various cellular activities (AAA) CLH39_16015 PF01434 Peptidase family M41 CLH39_16020 PF01728 FtsJ-like methyltransferase CLH39_16025 PF01985 CRS1 / YhbY (CRM) domain CLH39_16030 PF01272 Transcription elongation factor, GreA/GreB, C-term CLH39_16030 PF03449 Transcription elongation factor, N-terminal CLH39_16040 PF00860 Permease family CLH39_16045 PF00300 Histidine phosphatase superfamily (branch 1) CLH39_16060 PF02142 MGS-like domain CLH39_16060 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLH39_16060 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLH39_16065 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CLH39_16065 PF00117 Glutamine amidotransferase class-I CLH39_16070 PF00923 Transaldolase/Fructose-6-phosphate aldolase CLH39_16080 PF00593 TonB dependent receptor CLH39_16080 PF07715 TonB-dependent Receptor Plug Domain CLH39_16095 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_16100 PF00005 ABC transporter CLH39_16105 PF09084 NMT1/THI5 like CLH39_16110 PF13662 Toprim domain CLH39_16110 PF02132 RecR protein CLH39_16115 PF02575 YbaB/EbfC DNA-binding family CLH39_16120 PF12169 DNA polymerase III subunits gamma and tau domain III CLH39_16120 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CLH39_16120 PF12170 DNA polymerase III tau subunit V interacting with alpha CLH39_16130 PF13361 UvrD-like helicase C-terminal domain CLH39_16130 PF00580 UvrD/REP helicase N-terminal domain CLH39_16130 PF12705 PD-(D/E)XK nuclease superfamily CLH39_16140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_16140 PF03459 TOBE domain CLH39_16145 PF03459 TOBE domain CLH39_16145 PF00005 ABC transporter CLH39_16150 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_16160 PF02899 Phage integrase, N-terminal SAM-like domain CLH39_16160 PF00589 Phage integrase family CLH39_16165 PF04073 Aminoacyl-tRNA editing domain CLH39_16170 PF07690 Major Facilitator Superfamily CLH39_16180 PF13460 NAD(P)H-binding CLH39_16185 PF01638 HxlR-like helix-turn-helix CLH39_16215 PF03480 Bacterial extracellular solute-binding protein, family 7 CLH39_16225 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_16235 PF00701 Dihydrodipicolinate synthetase family CLH39_16240 PF00171 Aldehyde dehydrogenase family CLH39_16245 PF03466 LysR substrate binding domain CLH39_16245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_16250 PF01515 Phosphate acetyl/butaryl transferase CLH39_16250 PF03949 Malic enzyme, NAD binding domain CLH39_16250 PF00390 Malic enzyme, N-terminal domain CLH39_16255 PF00535 Glycosyl transferase family 2 CLH39_16290 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_16300 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CLH39_16305 PF01520 N-acetylmuramoyl-L-alanine amidase CLH39_16305 PF11741 AMIN domain CLH39_16310 PF09335 SNARE associated Golgi protein CLH39_16315 PF01119 DNA mismatch repair protein, C-terminal domain CLH39_16315 PF08676 MutL C terminal dimerisation domain CLH39_16325 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CLH39_16335 PF02769 AIR synthase related protein, C-terminal domain CLH39_16335 PF00586 AIR synthase related protein, N-terminal domain CLH39_16340 PF00308 Bacterial dnaA protein CLH39_16340 PF08299 Bacterial dnaA protein helix-turn-helix CLH39_16350 PF01743 Poly A polymerase head domain CLH39_16350 PF12626 Polymerase A arginine-rich C-terminus CLH39_16350 PF12627 Probable RNA and SrmB- binding site of polymerase A CLH39_16355 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CLH39_16360 PF03167 Uracil DNA glycosylase superfamily CLH39_16375 PF07690 Major Facilitator Superfamily CLH39_16385 PF00440 Bacterial regulatory proteins, tetR family CLH39_16390 PF05681 Fumarate hydratase (Fumerase) CLH39_16390 PF05683 Fumarase C-terminus CLH39_16395 PF00378 Enoyl-CoA hydratase/isomerase CLH39_16400 PF02091 Glycyl-tRNA synthetase alpha subunit CLH39_16405 PF05746 DALR anticodon binding domain CLH39_16405 PF02092 Glycyl-tRNA synthetase beta subunit CLH39_16415 PF01553 Acyltransferase CLH39_16425 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLH39_16430 PF07670 Nucleoside recognition CLH39_16435 PF00398 Ribosomal RNA adenine dimethylase CLH39_16440 PF00639 PPIC-type PPIASE domain CLH39_16440 PF09312 SurA N-terminal domain CLH39_16445 PF04453 LPS transport system D CLH39_16450 PF01636 Phosphotransferase enzyme family CLH39_16455 PF00483 Nucleotidyl transferase CLH39_16465 PF00005 ABC transporter CLH39_16470 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_16475 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLH39_16480 PF03180 NLPA lipoprotein CLH39_16485 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_16490 PF09383 NIL domain CLH39_16490 PF00005 ABC transporter CLH39_16505 PF01266 FAD dependent oxidoreductase CLH39_16505 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CLH39_16510 PF00459 Inositol monophosphatase family CLH39_16515 PF13193 AMP-binding enzyme C-terminal domain CLH39_16515 PF00501 AMP-binding enzyme CLH39_16520 PF01546 Peptidase family M20/M25/M40 CLH39_16520 PF07687 Peptidase dimerisation domain CLH39_16525 PF03061 Thioesterase superfamily CLH39_16530 PF03448 MgtE intracellular N domain CLH39_16530 PF01769 Divalent cation transporter CLH39_16530 PF00571 CBS domain CLH39_16540 PF01043 SecA preprotein cross-linking domain CLH39_16540 PF07517 SecA DEAD-like domain CLH39_16540 PF02810 SEC-C motif CLH39_16540 PF07516 SecA Wing and Scaffold domain CLH39_16545 PF01551 Peptidase family M23 CLH39_16545 PF01464 Transglycosylase SLT domain CLH39_16545 PF10145 Phage-related minor tail protein CLH39_16555 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CLH39_16560 PF12327 FtsZ family, C-terminal domain CLH39_16560 PF00091 Tubulin/FtsZ family, GTPase domain CLH39_16565 PF02491 SHS2 domain inserted in FTSA CLH39_16570 PF03799 Cell division protein FtsQ CLH39_16570 PF08478 POTRA domain, FtsQ-type CLH39_16575 PF01820 D-ala D-ala ligase N-terminus CLH39_16575 PF07478 D-ala D-ala ligase C-terminus CLH39_16580 PF08245 Mur ligase middle domain CLH39_16580 PF02875 Mur ligase family, glutamate ligase domain CLH39_16580 PF01225 Mur ligase family, catalytic domain CLH39_16585 PF04101 Glycosyltransferase family 28 C-terminal domain CLH39_16585 PF03033 Glycosyltransferase family 28 N-terminal domain CLH39_16590 PF01098 Cell cycle protein CLH39_16595 PF02875 Mur ligase family, glutamate ligase domain CLH39_16595 PF08245 Mur ligase middle domain CLH39_16600 PF00953 Glycosyl transferase family 4 CLH39_16605 PF08245 Mur ligase middle domain CLH39_16605 PF01225 Mur ligase family, catalytic domain CLH39_16605 PF02875 Mur ligase family, glutamate ligase domain CLH39_16610 PF03717 Penicillin-binding Protein dimerisation domain CLH39_16610 PF00905 Penicillin binding protein transpeptidase domain CLH39_16615 PF04999 Cell division protein FtsL CLH39_16620 PF01795 MraW methylase family CLH39_16625 PF02381 MraZ protein, putative antitoxin-like CLH39_16635 PF12848 ABC transporter CLH39_16635 PF00005 ABC transporter CLH39_16635 PF16326 ABC transporter C-terminal domain CLH39_16640 PF00111 2Fe-2S iron-sulfur cluster binding domain CLH39_16645 PF00268 Ribonucleotide reductase, small chain CLH39_16650 PF02867 Ribonucleotide reductase, barrel domain CLH39_16650 PF00317 Ribonucleotide reductase, all-alpha domain CLH39_16650 PF03477 ATP cone domain CLH39_16655 PF16124 RecQ zinc-binding CLH39_16655 PF00270 DEAD/DEAH box helicase CLH39_16655 PF00271 Helicase conserved C-terminal domain CLH39_16655 PF00570 HRDC domain CLH39_16655 PF09382 RQC domain CLH39_16665 PF00654 Voltage gated chloride channel CLH39_16670 PF02322 Cytochrome bd terminal oxidase subunit II CLH39_16675 PF01654 Cytochrome bd terminal oxidase subunit I CLH39_16680 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CLH39_16680 PF00749 tRNA synthetases class I (E and Q), catalytic domain CLH39_16685 PF03775 Septum formation inhibitor MinC, C-terminal domain CLH39_16685 PF05209 Septum formation inhibitor MinC, N-terminal domain CLH39_16690 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLH39_16695 PF03776 Septum formation topological specificity factor MinE CLH39_16715 PF00005 ABC transporter CLH39_16715 PF12848 ABC transporter CLH39_16725 PF00535 Glycosyl transferase family 2 CLH39_16730 PF17760 UvrA interaction domain CLH39_16730 PF00005 ABC transporter CLH39_16730 PF17755 UvrA DNA-binding domain CLH39_16735 PF04715 Anthranilate synthase component I, N terminal region CLH39_16735 PF00425 chorismate binding enzyme CLH39_16745 PF00899 ThiF family CLH39_16755 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CLH39_16755 PF01243 Pyridoxamine 5'-phosphate oxidase CLH39_16760 PF01613 Flavin reductase like domain CLH39_16765 PF01266 FAD dependent oxidoreductase CLH39_16770 PF00551 Formyl transferase CLH39_16780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_16780 PF03466 LysR substrate binding domain CLH39_16785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLH39_16785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLH39_16785 PF02770 Acyl-CoA dehydrogenase, middle domain CLH39_16790 PF00171 Aldehyde dehydrogenase family CLH39_16790 PF01575 MaoC like domain CLH39_16795 PF12697 Alpha/beta hydrolase family CLH39_16800 PF01300 Telomere recombination CLH39_16800 PF03481 Putative GTP-binding controlling metal-binding CLH39_16805 PF02222 ATP-grasp domain CLH39_16805 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CLH39_16810 PF00731 AIR carboxylase CLH39_16815 PF01259 SAICAR synthetase CLH39_16820 PF01116 Fructose-bisphosphate aldolase class-II CLH39_16825 PF00994 Probable molybdopterin binding domain CLH39_16835 PF00171 Aldehyde dehydrogenase family CLH39_16850 PF00162 Phosphoglycerate kinase CLH39_16855 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CLH39_16855 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLH39_16860 PF00456 Transketolase, thiamine diphosphate binding domain CLH39_16860 PF02780 Transketolase, C-terminal domain CLH39_16860 PF02779 Transketolase, pyrimidine binding domain CLH39_16865 PF04452 RNA methyltransferase CLH39_16870 PF01337 Barstar (barnase inhibitor) CLH39_16880 PF00390 Malic enzyme, N-terminal domain CLH39_16880 PF03949 Malic enzyme, NAD binding domain CLH39_16880 PF01515 Phosphate acetyl/butaryl transferase CLH39_16890 PF00155 Aminotransferase class I and II CLH39_16895 PF01464 Transglycosylase SLT domain CLH39_16900 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CLH39_16905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLH39_16910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_16910 PF03466 LysR substrate binding domain CLH39_16915 PF00083 Sugar (and other) transporter CLH39_16915 PF08946 Osmosensory transporter coiled coil CLH39_16925 PF01425 Amidase CLH39_16940 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family CLH39_16945 PF00111 2Fe-2S iron-sulfur cluster binding domain CLH39_16945 PF00970 Oxidoreductase FAD-binding domain CLH39_16955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_16955 PF03466 LysR substrate binding domain CLH39_16970 PF05957 Bacterial protein of unknown function (DUF883) CLH39_16985 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CLH39_16990 PF02547 Queuosine biosynthesis protein CLH39_16995 PF01702 Queuine tRNA-ribosyltransferase CLH39_17000 PF02699 Preprotein translocase subunit CLH39_17005 PF02355 Protein export membrane protein CLH39_17005 PF07549 SecD/SecF GG Motif CLH39_17005 PF13721 SecD export protein N-terminal TM region CLH39_17010 PF07549 SecD/SecF GG Motif CLH39_17010 PF02355 Protein export membrane protein CLH39_17015 PF00557 Metallopeptidase family M24 CLH39_17025 PF04055 Radical SAM superfamily CLH39_17025 PF00919 Uncharacterized protein family UPF0004 CLH39_17025 PF01938 TRAM domain CLH39_17030 PF02562 PhoH-like protein CLH39_17035 PF02130 Uncharacterized protein family UPF0054 CLH39_17040 PF03471 Transporter associated domain CLH39_17040 PF00571 CBS domain CLH39_17045 PF00795 Carbon-nitrogen hydrolase CLH39_17050 PF00990 Diguanylate cyclase, GGDEF domain CLH39_17050 PF03707 Bacterial signalling protein N terminal repeat CLH39_17050 PF00563 EAL domain CLH39_17085 PF07690 Major Facilitator Superfamily CLH39_17090 PF00196 Bacterial regulatory proteins, luxR family CLH39_17100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLH39_17105 PF00873 AcrB/AcrD/AcrF family CLH39_17120 PF06968 Biotin and Thiamin Synthesis associated domain CLH39_17120 PF04055 Radical SAM superfamily CLH39_17140 PF08534 Redoxin CLH39_17145 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_17150 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CLH39_17155 PF03480 Bacterial extracellular solute-binding protein, family 7 CLH39_17160 PF00989 PAS fold CLH39_17160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_17160 PF00512 His Kinase A (phospho-acceptor) domain CLH39_17165 PF00072 Response regulator receiver domain CLH39_17165 PF00196 Bacterial regulatory proteins, luxR family CLH39_17170 PF01967 MoaC family CLH39_17180 PF02391 MoaE protein CLH39_17185 PF00994 Probable molybdopterin binding domain CLH39_17190 PF00994 Probable molybdopterin binding domain CLH39_17190 PF03454 MoeA C-terminal region (domain IV) CLH39_17190 PF03453 MoeA N-terminal region (domain I and II) CLH39_17195 PF12804 MobA-like NTP transferase domain CLH39_17200 PF06463 Molybdenum Cofactor Synthesis C CLH39_17200 PF04055 Radical SAM superfamily CLH39_17205 PF12728 Helix-turn-helix domain CLH39_17205 PF12727 PBP superfamily domain CLH39_17215 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLH39_17215 PF00037 4Fe-4S binding domain CLH39_17215 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLH39_17220 PF01568 Molydopterin dinucleotide binding domain CLH39_17220 PF12838 4Fe-4S dicluster domain CLH39_17220 PF00384 Molybdopterin oxidoreductase CLH39_17220 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CLH39_17220 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CLH39_17225 PF02634 FdhD/NarQ family CLH39_17235 PF00582 Universal stress protein family CLH39_17265 PF00535 Glycosyl transferase family 2 CLH39_17270 PF01152 Bacterial-like globin CLH39_17275 PF02082 Transcriptional regulator CLH39_17280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLH39_17280 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLH39_17280 PF01842 ACT domain CLH39_17285 PF03150 Di-haem cytochrome c peroxidase CLH39_17285 PF00034 Cytochrome c CLH39_17290 PF00005 ABC transporter CLH39_17295 PF00005 ABC transporter CLH39_17295 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLH39_17300 PF02653 Branched-chain amino acid transport system / permease component CLH39_17300 PF11862 Domain of unknown function (DUF3382) CLH39_17305 PF02653 Branched-chain amino acid transport system / permease component CLH39_17325 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CLH39_17325 PF02805 Metal binding domain of Ada CLH39_17325 PF12833 Helix-turn-helix domain CLH39_17325 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CLH39_17335 PF02683 Cytochrome C biogenesis protein transmembrane region CLH39_17345 PF03918 Cytochrome C biogenesis protein CLH39_17350 PF08534 Redoxin CLH39_17355 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CLH39_17355 PF01578 Cytochrome C assembly protein CLH39_17360 PF03100 CcmE CLH39_17370 PF01578 Cytochrome C assembly protein CLH39_17375 PF03379 CcmB protein CLH39_17380 PF00005 ABC transporter CLH39_17390 PF03466 LysR substrate binding domain CLH39_17390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_17395 PF00484 Carbonic anhydrase CLH39_17400 PF03797 Autotransporter beta-domain CLH39_17400 PF00657 GDSL-like Lipase/Acylhydrolase CLH39_17410 PF00005 ABC transporter CLH39_17410 PF12848 ABC transporter CLH39_17415 PF01909 Nucleotidyltransferase domain CLH39_17415 PF13427 Domain of unknown function (DUF4111) CLH39_17430 PF01926 50S ribosome-binding GTPase CLH39_17430 PF06071 Protein of unknown function (DUF933) CLH39_17440 PF01195 Peptidyl-tRNA hydrolase CLH39_17445 PF01386 Ribosomal L25p family CLH39_17445 PF14693 Ribosomal protein TL5, C-terminal domain CLH39_17450 PF14572 Phosphoribosyl synthetase-associated domain CLH39_17450 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CLH39_17460 PF00288 GHMP kinases N terminal domain CLH39_17460 PF08544 GHMP kinases C terminal CLH39_17465 PF03550 Outer membrane lipoprotein LolB CLH39_17475 PF06827 Zinc finger found in FPG and IleRS CLH39_17475 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CLH39_17475 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CLH39_17485 PF01494 FAD binding domain CLH39_17495 PF04209 homogentisate 1,2-dioxygenase CLH39_17500 PF01557 Fumarylacetoacetate (FAA) hydrolase family CLH39_17510 PF01565 FAD binding domain CLH39_17510 PF02913 FAD linked oxidases, C-terminal domain CLH39_17515 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLH39_17515 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLH39_17515 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLH39_17515 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLH39_17520 PF13477 Glycosyl transferase 4-like CLH39_17520 PF00534 Glycosyl transferases group 1 CLH39_17525 PF17101 Stealth protein CR1, conserved region 1 CLH39_17525 PF00534 Glycosyl transferases group 1 CLH39_17525 PF17102 Stealth protein CR3, conserved region 3 CLH39_17525 PF17103 Stealth protein CR4, conserved region 4 CLH39_17525 PF11380 Stealth protein CR2, conserved region 2 CLH39_17530 PF00534 Glycosyl transferases group 1 CLH39_17530 PF13439 Glycosyltransferase Family 4 CLH39_17540 PF01370 NAD dependent epimerase/dehydratase family CLH39_17545 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLH39_17545 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLH39_17545 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLH39_17550 PF00953 Glycosyl transferase family 4 CLH39_17555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_17555 PF03466 LysR substrate binding domain CLH39_17560 PF09349 OHCU decarboxylase CLH39_17560 PF01014 Uricase CLH39_17565 PF04115 Ureidoglycolate lyase CLH39_17570 PF00596 Class II Aldolase and Adducin N-terminal domain CLH39_17575 PF01361 Tautomerase enzyme CLH39_17580 PF00860 Permease family CLH39_17590 PF03466 LysR substrate binding domain CLH39_17590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_17595 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLH39_17595 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLH39_17595 PF00205 Thiamine pyrophosphate enzyme, central domain CLH39_17600 PF01261 Xylose isomerase-like TIM barrel CLH39_17605 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CLH39_17605 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CLH39_17610 PF05161 MOFRL family CLH39_17610 PF13660 Domain of unknown function (DUF4147) CLH39_17615 PF03928 Haem-degrading CLH39_17620 PF02887 Pyruvate kinase, alpha/beta domain CLH39_17620 PF00224 Pyruvate kinase, barrel domain CLH39_17625 PF03232 Ubiquinone biosynthesis protein COQ7 CLH39_17650 PF00115 Cytochrome C and Quinol oxidase polypeptide I CLH39_17655 PF02566 OsmC-like protein CLH39_17660 PF00303 Thymidylate synthase CLH39_17665 PF00186 Dihydrofolate reductase CLH39_17670 PF01597 Glycine cleavage H-protein CLH39_17680 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CLH39_17680 PF01276 Orn/Lys/Arg decarboxylase, major domain CLH39_17680 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CLH39_17685 PF00692 dUTPase CLH39_17700 PF10609 NUBPL iron-transfer P-loop NTPase CLH39_17710 PF09334 tRNA synthetases class I (M) CLH39_17710 PF01588 Putative tRNA binding domain CLH39_17715 PF16916 Dimerisation domain of Zinc Transporter CLH39_17715 PF01545 Cation efflux family CLH39_17720 PF03466 LysR substrate binding domain CLH39_17720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_17725 PF07883 Cupin domain CLH39_17725 PF05899 Protein of unknown function (DUF861) CLH39_17730 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLH39_17745 PF00596 Class II Aldolase and Adducin N-terminal domain CLH39_17750 PF00083 Sugar (and other) transporter CLH39_17750 PF07690 Major Facilitator Superfamily CLH39_17755 PF01323 DSBA-like thioredoxin domain CLH39_17760 PF00072 Response regulator receiver domain CLH39_17760 PF00990 Diguanylate cyclase, GGDEF domain CLH39_17765 PF01699 Sodium/calcium exchanger protein CLH39_17775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_17775 PF03466 LysR substrate binding domain CLH39_17795 PF14525 AraC-binding-like domain CLH39_17795 PF12833 Helix-turn-helix domain CLH39_17800 PF00550 Phosphopantetheine attachment site CLH39_17800 PF00857 Isochorismatase family CLH39_17825 PF02390 Putative methyltransferase CLH39_17830 PF00561 alpha/beta hydrolase fold CLH39_17835 PF05690 Thiazole biosynthesis protein ThiG CLH39_17835 PF02597 ThiS family CLH39_17840 PF01476 LysM domain CLH39_17840 PF04972 BON domain CLH39_17845 PF00448 SRP54-type protein, GTPase domain CLH39_17845 PF02978 Signal peptide binding domain CLH39_17845 PF02881 SRP54-type protein, helical bundle domain CLH39_17860 PF01510 N-acetylmuramoyl-L-alanine amidase CLH39_17865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLH39_17865 PF00183 Hsp90 protein CLH39_17875 PF08803 Putative mono-oxygenase ydhR CLH39_17890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_17890 PF03466 LysR substrate binding domain CLH39_17895 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_17900 PF01425 Amidase CLH39_17910 PF00440 Bacterial regulatory proteins, tetR family CLH39_17915 PF07690 Major Facilitator Superfamily CLH39_17920 PF01479 S4 domain CLH39_17925 PF13378 Enolase C-terminal domain-like CLH39_17925 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CLH39_17930 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_17935 PF01966 HD domain CLH39_17945 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CLH39_17955 PF05698 Bacterial trigger factor protein (TF) C-terminus CLH39_17960 PF03741 Integral membrane protein TerC family CLH39_17975 PF07715 TonB-dependent Receptor Plug Domain CLH39_17975 PF07660 Secretin and TonB N terminus short domain CLH39_17975 PF00593 TonB dependent receptor CLH39_17985 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_17990 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_17995 PF13416 Bacterial extracellular solute-binding protein CLH39_18000 PF08402 TOBE domain CLH39_18000 PF00005 ABC transporter CLH39_18005 PF08220 DeoR-like helix-turn-helix domain CLH39_18005 PF00455 DeoR C terminal sensor domain CLH39_18010 PF07969 Amidohydrolase family CLH39_18015 PF00578 AhpC/TSA family CLH39_18030 PF00324 Amino acid permease CLH39_18035 PF00266 Aminotransferase class-V CLH39_18040 PF01037 Lrp/AsnC ligand binding domain CLH39_18045 PF00392 Bacterial regulatory proteins, gntR family CLH39_18060 PF02652 L-lactate permease CLH39_18065 PF07729 FCD domain CLH39_18065 PF00392 Bacterial regulatory proteins, gntR family CLH39_18070 PF01070 FMN-dependent dehydrogenase CLH39_18075 PF01565 FAD binding domain CLH39_18075 PF09330 D-lactate dehydrogenase, membrane binding CLH39_18080 PF04954 Siderophore-interacting protein CLH39_18080 PF08021 Siderophore-interacting FAD-binding domain CLH39_18080 PF00664 ABC transporter transmembrane region CLH39_18080 PF00005 ABC transporter CLH39_18085 PF00005 ABC transporter CLH39_18090 PF01032 FecCD transport family CLH39_18095 PF01032 FecCD transport family CLH39_18100 PF00005 ABC transporter CLH39_18105 PF01497 Periplasmic binding protein CLH39_18110 PF07715 TonB-dependent Receptor Plug Domain CLH39_18110 PF00593 TonB dependent receptor CLH39_18120 PF00970 Oxidoreductase FAD-binding domain CLH39_18120 PF00111 2Fe-2S iron-sulfur cluster binding domain CLH39_18120 PF00175 Oxidoreductase NAD-binding domain CLH39_18125 PF03466 LysR substrate binding domain CLH39_18125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_18130 PF03358 NADPH-dependent FMN reductase CLH39_18135 PF07690 Major Facilitator Superfamily CLH39_18140 PF02627 Carboxymuconolactone decarboxylase family CLH39_18155 PF16347 Domain of unknown function (DUF4976) CLH39_18155 PF00884 Sulfatase CLH39_18165 PF05974 Domain of unknown function (DUF892) CLH39_18175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_18175 PF03466 LysR substrate binding domain CLH39_18180 PF07690 Major Facilitator Superfamily CLH39_18185 PF00248 Aldo/keto reductase family CLH39_18195 PF13609 Gram-negative porin CLH39_18200 PF02463 RecF/RecN/SMC N terminal domain CLH39_18200 PF06470 SMC proteins Flexible Hinge Domain CLH39_18240 PF07996 Type IV secretion system proteins CLH39_18280 PF00589 Phage integrase family CLH39_18290 PF01594 AI-2E family transporter CLH39_18295 PF02540 NAD synthase CLH39_18305 PF01425 Amidase CLH39_18310 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CLH39_18310 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_18320 PF03480 Bacterial extracellular solute-binding protein, family 7 CLH39_18330 PF00920 Dehydratase family CLH39_18335 PF00311 Phosphoenolpyruvate carboxylase CLH39_18340 PF01925 Sulfite exporter TauE/SafE CLH39_18360 PF01743 Poly A polymerase head domain CLH39_18360 PF12627 Probable RNA and SrmB- binding site of polymerase A CLH39_18365 PF14718 Soluble lytic murein transglycosylase L domain CLH39_18365 PF01464 Transglycosylase SLT domain CLH39_18375 PF02219 Methylenetetrahydrofolate reductase CLH39_18380 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CLH39_18385 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CLH39_18385 PF05221 S-adenosyl-L-homocysteine hydrolase CLH39_18390 PF00438 S-adenosylmethionine synthetase, N-terminal domain CLH39_18390 PF02772 S-adenosylmethionine synthetase, central domain CLH39_18390 PF02773 S-adenosylmethionine synthetase, C-terminal domain CLH39_18400 PF03279 Bacterial lipid A biosynthesis acyltransferase CLH39_18405 PF01678 Diaminopimelate epimerase CLH39_18415 PF02899 Phage integrase, N-terminal SAM-like domain CLH39_18415 PF00589 Phage integrase family CLH39_18420 PF01297 Zinc-uptake complex component A periplasmic CLH39_18425 PF00950 ABC 3 transport family CLH39_18430 PF00005 ABC transporter CLH39_18435 PF01475 Ferric uptake regulator family CLH39_18440 PF02492 CobW/HypB/UreG, nucleotide-binding domain CLH39_18440 PF07683 Cobalamin synthesis protein cobW C-terminal domain CLH39_18445 PF01258 Prokaryotic dksA/traR C4-type zinc finger CLH39_18450 PF00227 Proteasome subunit CLH39_18455 PF00004 ATPase family associated with various cellular activities (AAA) CLH39_18455 PF07724 AAA domain (Cdc48 subfamily) CLH39_18470 PF01923 Cobalamin adenosyltransferase CLH39_18485 PF00202 Aminotransferase class-III CLH39_18495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_18495 PF03466 LysR substrate binding domain CLH39_18500 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLH39_18500 PF02272 DHHA1 domain CLH39_18500 PF01411 tRNA synthetases class II (A) CLH39_18510 PF01810 LysE type translocator CLH39_18535 PF01042 Endoribonuclease L-PSP CLH39_18540 PF01042 Endoribonuclease L-PSP CLH39_18550 PF04172 LrgB-like family CLH39_18555 PF03458 UPF0126 domain CLH39_18560 PF07690 Major Facilitator Superfamily CLH39_18570 PF00561 alpha/beta hydrolase fold CLH39_18575 PF03472 Autoinducer binding domain CLH39_18575 PF00196 Bacterial regulatory proteins, luxR family CLH39_18585 PF04262 Glutamate-cysteine ligase CLH39_18590 PF07715 TonB-dependent Receptor Plug Domain CLH39_18590 PF00593 TonB dependent receptor CLH39_18605 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLH39_18615 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CLH39_18615 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CLH39_18615 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CLH39_18620 PF02515 CoA-transferase family III CLH39_18630 PF00378 Enoyl-CoA hydratase/isomerase CLH39_18635 PF00310 Glutamine amidotransferases class-II CLH39_18635 PF04898 Glutamate synthase central domain CLH39_18635 PF01645 Conserved region in glutamate synthase CLH39_18635 PF01493 GXGXG motif CLH39_18640 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLH39_18640 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLH39_18655 PF13361 UvrD-like helicase C-terminal domain CLH39_18655 PF00580 UvrD/REP helicase N-terminal domain CLH39_18660 PF17764 3′ DNA-binding domain (3′BD) CLH39_18660 PF00271 Helicase conserved C-terminal domain CLH39_18660 PF18074 Primosomal protein N C-terminal domain CLH39_18660 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CLH39_18660 PF00270 DEAD/DEAH box helicase CLH39_18665 PF01208 Uroporphyrinogen decarboxylase (URO-D) CLH39_18675 PF12833 Helix-turn-helix domain CLH39_18675 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CLH39_18685 PF02975 Methylamine dehydrogenase, L chain CLH39_18690 PF00578 AhpC/TSA family CLH39_18700 PF06433 Methylamine dehydrogenase heavy chain (MADH) CLH39_18710 PF00171 Aldehyde dehydrogenase family CLH39_18715 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CLH39_18715 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CLH39_18725 PF00701 Dihydrodipicolinate synthetase family CLH39_18730 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_18735 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_18740 PF00005 ABC transporter CLH39_18745 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLH39_18750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_18750 PF03466 LysR substrate binding domain CLH39_18760 PF00005 ABC transporter CLH39_18765 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_18770 PF01979 Amidohydrolase family CLH39_18775 PF01979 Amidohydrolase family CLH39_18780 PF01546 Peptidase family M20/M25/M40 CLH39_18785 PF01613 Flavin reductase like domain CLH39_18800 PF01636 Phosphotransferase enzyme family CLH39_18805 PF13673 Acetyltransferase (GNAT) domain CLH39_18810 PF04229 GrpB protein CLH39_18815 PF00664 ABC transporter transmembrane region CLH39_18815 PF00005 ABC transporter CLH39_18825 PF04235 Protein of unknown function (DUF418) CLH39_18835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_18835 PF03466 LysR substrate binding domain CLH39_18840 PF01063 Amino-transferase class IV CLH39_18850 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLH39_18850 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLH39_18865 PF05726 Pirin C-terminal cupin domain CLH39_18865 PF02678 Pirin CLH39_18875 PF03741 Integral membrane protein TerC family CLH39_18875 PF03471 Transporter associated domain CLH39_18885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_18885 PF03466 LysR substrate binding domain CLH39_18895 PF07690 Major Facilitator Superfamily CLH39_18900 PF00270 DEAD/DEAH box helicase CLH39_18900 PF00271 Helicase conserved C-terminal domain CLH39_18905 PF00756 Putative esterase CLH39_18910 PF01032 FecCD transport family CLH39_18915 PF00005 ABC transporter CLH39_18935 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CLH39_18935 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CLH39_18945 PF00005 ABC transporter CLH39_18950 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_18965 PF13458 Periplasmic binding protein CLH39_18980 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLH39_18980 PF00005 ABC transporter CLH39_18985 PF00005 ABC transporter CLH39_18995 PF13193 AMP-binding enzyme C-terminal domain CLH39_18995 PF00501 AMP-binding enzyme CLH39_19000 PF00857 Isochorismatase family CLH39_19000 PF00550 Phosphopantetheine attachment site CLH39_19005 PF00975 Thioesterase domain CLH39_19005 PF00668 Condensation domain CLH39_19005 PF13193 AMP-binding enzyme C-terminal domain CLH39_19005 PF00550 Phosphopantetheine attachment site CLH39_19005 PF00501 AMP-binding enzyme CLH39_19010 PF05977 Transmembrane secretion effector CLH39_19020 PF00425 chorismate binding enzyme CLH39_19025 PF00550 Phosphopantetheine attachment site CLH39_19025 PF00857 Isochorismatase family CLH39_19030 PF00106 short chain dehydrogenase CLH39_19040 PF17200 Single Cache domain 2 CLH39_19040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLH39_19040 PF00672 HAMP domain CLH39_19050 PF10411 Disulfide bond isomerase protein N-terminus CLH39_19050 PF13098 Thioredoxin-like domain CLH39_19055 PF01494 FAD binding domain CLH39_19060 PF03562 MltA specific insert domain CLH39_19060 PF06725 3D domain CLH39_19065 PF04379 ApaG domain CLH39_19070 PF00834 Ribulose-phosphate 3 epimerase family CLH39_19080 PF13419 Haloacid dehalogenase-like hydrolase CLH39_19085 PF04715 Anthranilate synthase component I, N terminal region CLH39_19085 PF00425 chorismate binding enzyme CLH39_19090 PF00117 Glutamine amidotransferase class-I CLH39_19095 PF00591 Glycosyl transferase family, a/b domain CLH39_19095 PF02885 Glycosyl transferase family, helical bundle domain CLH39_19100 PF00218 Indole-3-glycerol phosphate synthase CLH39_19125 PF02036 SCP-2 sterol transfer family CLH39_19135 PF01136 Peptidase family U32 CLH39_19185 PF03167 Uracil DNA glycosylase superfamily CLH39_19195 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CLH39_19195 PF04055 Radical SAM superfamily CLH39_19200 PF00378 Enoyl-CoA hydratase/isomerase CLH39_19205 PF03099 Biotin/lipoate A/B protein ligase family CLH39_19210 PF04359 Protein of unknown function (DUF493) CLH39_19215 PF01063 Amino-transferase class IV CLH39_19220 PF07943 Penicillin-binding protein 5, C-terminal domain CLH39_19220 PF00768 D-alanyl-D-alanine carboxypeptidase CLH39_19230 PF03099 Biotin/lipoate A/B protein ligase family CLH39_19230 PF02237 Biotin protein ligase C terminal domain CLH39_19235 PF03309 Type III pantothenate kinase CLH39_19240 PF00483 Nucleotidyl transferase CLH39_19245 PF00313 'Cold-shock' DNA-binding domain CLH39_19250 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CLH39_19250 PF00534 Glycosyl transferases group 1 CLH39_19255 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CLH39_19260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_19260 PF03466 LysR substrate binding domain CLH39_19265 PF07286 Protein of unknown function (DUF1445) CLH39_19280 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_19290 PF01425 Amidase CLH39_19295 PF00892 EamA-like transporter family CLH39_19300 PF02911 Formyl transferase, C-terminal domain CLH39_19300 PF00551 Formyl transferase CLH39_19305 PF01327 Polypeptide deformylase CLH39_19310 PF02481 DNA recombination-mediator protein A CLH39_19310 PF17782 DprA winged helix domain CLH39_19315 PF00682 HMGL-like CLH39_19325 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLH39_19335 PF00005 ABC transporter CLH39_19350 PF02653 Branched-chain amino acid transport system / permease component CLH39_19355 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLH39_19355 PF00005 ABC transporter CLH39_19360 PF00501 AMP-binding enzyme CLH39_19370 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_19375 PF01168 Alanine racemase, N-terminal domain CLH39_19380 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CLH39_19380 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CLH39_19385 PF00005 ABC transporter CLH39_19390 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLH39_19395 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_19400 PF00528 Binding-protein-dependent transport system inner membrane component CLH39_19405 PF00710 Asparaginase, N-terminal CLH39_19405 PF17763 Glutaminase/Asparaginase C-terminal domain CLH39_19410 PF00849 RNA pseudouridylate synthase CLH39_19420 PF16868 NMT1-like family CLH39_19430 PF00708 Acylphosphatase CLH39_19435 PF03707 Bacterial signalling protein N terminal repeat CLH39_19435 PF00563 EAL domain CLH39_19435 PF00990 Diguanylate cyclase, GGDEF domain CLH39_19445 PF01381 Helix-turn-helix CLH39_19450 PF02646 RmuC family CLH39_19460 PF01266 FAD dependent oxidoreductase CLH39_19465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_19465 PF03466 LysR substrate binding domain CLH39_19470 PF07729 FCD domain CLH39_19470 PF00392 Bacterial regulatory proteins, gntR family CLH39_19475 PF03401 Tripartite tricarboxylate transporter family receptor CLH39_19485 PF00501 AMP-binding enzyme CLH39_19485 PF13193 AMP-binding enzyme C-terminal domain CLH39_19505 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_19515 PF03480 Bacterial extracellular solute-binding protein, family 7 CLH39_19520 PF13419 Haloacid dehalogenase-like hydrolase CLH39_19540 PF00005 ABC transporter CLH39_19545 PF02405 Permease MlaE CLH39_19555 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_19575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_19575 PF03466 LysR substrate binding domain CLH39_19585 PF03466 LysR substrate binding domain CLH39_19585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_19590 PF01425 Amidase CLH39_19605 PF10396 GTP-binding protein TrmE N-terminus CLH39_19605 PF01926 50S ribosome-binding GTPase CLH39_19605 PF12631 MnmE helical domain CLH39_19620 PF04536 TPM domain CLH39_19630 PF00270 DEAD/DEAH box helicase CLH39_19630 PF00271 Helicase conserved C-terminal domain CLH39_19635 PF01810 LysE type translocator CLH39_19640 PF00009 Elongation factor Tu GTP binding domain CLH39_19640 PF03144 Elongation factor Tu domain 2 CLH39_19640 PF16658 Class II release factor RF3, C-terminal domain CLH39_19650 PF00210 Ferritin-like domain CLH39_19660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLH39_19660 PF03466 LysR substrate binding domain CLH39_19665 PF00857 Isochorismatase family CLH39_19670 PF03480 Bacterial extracellular solute-binding protein, family 7 CLH39_19680 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CLH39_19680 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLH39_19685 PF02515 CoA-transferase family III CLH39_19690 PF00682 HMGL-like CLH39_19695 PF00330 Aconitase family (aconitate hydratase) CLH39_19700 PF00694 Aconitase C-terminal domain CLH39_19705 PF00593 TonB dependent receptor CLH39_19705 PF07715 TonB-dependent Receptor Plug Domain CLH39_19710 PF04963 Sigma-54 factor, core binding domain CLH39_19710 PF04552 Sigma-54, DNA binding domain CLH39_19710 PF00309 Sigma-54 factor, Activator interacting domain (AID) CLH39_19720 PF08502 LeuA allosteric (dimerisation) domain CLH39_19720 PF00682 HMGL-like CLH39_19760 PF01323 DSBA-like thioredoxin domain CLH39_19760 PF00085 Thioredoxin CLH39_19765 PF01053 Cys/Met metabolism PLP-dependent enzyme CLH39_19775 PF00376 MerR family regulatory protein CLH39_19775 PF09278 MerR, DNA binding CLH39_19780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLH39_19780 PF02770 Acyl-CoA dehydrogenase, middle domain CLH39_19780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLH39_19785 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CLH39_19790 PF02803 Thiolase, C-terminal domain CLH39_19790 PF00108 Thiolase, N-terminal domain CLH39_19795 PF01039 Carboxyl transferase domain