 CLH39_00030 NONE
 CLH39_00035    9076 ..    9094 +  -3.8  -3.16475   AAGCGAGGTAGGGAA             GCCGGT CTTCTGA ATCGGC             TTAGCTATATCAGTC  46 49
 CLH39_00040 NONE
 CLH39_00045 NONE
 CLH39_00075   19102 ..   19114 +  -3.4  -4.16284   GCCCCGTCTTTGACC                GCTA GCATG TAGC                TTTATTGCCAAATCT  59 316
 CLH39_00080 NONE
 CLH39_00085 NONE
 CLH39_00090   22055 ..   22076 + -15.1   -5.9218   TTTGAAAGACTGAAA           GCCGGGCCT GAAT GGGCCCGGC            TTTTTTTATTGTCTG 100 50
 CLH39_00105   27648 ..   27675 + -12.1  -5.44721   AACAGTGTCCCAAAA        TCCCCATCTTG CTGGTT CAGGATGGGGA         TTTTTTTCGCCTCCT 100 75
        modA NONE
        modB NONE
        modD   30418 ..   30433 +  -3.2  -2.66272   TTAGACCCCAAATGC              TGCAAC AAGC GCTGCA               TGGGTTTGGATAGGG  40 301
 CLH39_00130   32202 ..   32215 +  -2.4  -3.13403   CCACAAGACTGGCAA               CATC ATTCAC GATG                TATTGATCCGCCAAG  42 109
 CLH39_00135   32818 ..   32832 +  -5.7  -4.19953   CAACCACAGCACCAA               GAAGC AGACA GCTTC               TTTTAAACTTAAATA  68 69
 CLH39_00140   34157 ..   34194 +  -3.3   -3.7829   AAACAGGGTTTCCAT   GCCTTCGTCGGACAC-CA GGG TGTGCGTGCGACCGGGGC   TTTCGTGGATGTAAT  52 175
        msuE NONE
        ssuD NONE
 CLH39_00160   37609 ..   37627 + -11.7  -5.04385   AGATGCACACCAGGA             GGGGCGA GACCA TCGCCCC             TTTTTTGACGGTGTC 100 87
 CLH39_00215 NONE
 CLH39_00220   49514 ..   49529 + -10.4  -4.41348   AAAGACCAAAAAAAA              TCCGCC CGAA GGCGGA               TTTCTTTACAGCAAG  89 93
 CLH39_00235   53989 ..   54008 + -12.1  -2.75481   TGTTTTCATACCCCA            GCCCCGC CTCCGT GCGGGGC             TGGTTCCCATTACGC  74 43
 CLH39_00240   55097 ..   55110 +  -3.7  -2.76322   GCACCCAATTGTCGG               GCGCC AAGG GGCAC                TAATATGTTCGCTAA  44 9
 CLH39_00245 NONE
 CLH39_00250 NONE
 CLH39_00255   58033 ..   58061 + -11.8  -5.33785   ATGCCAACAGTAAAA       CCGCCCA--CGGCA ACT TGCCGAATGGGCGG       TTTTTTCTGATAATT 100 50
 CLH39_00260   58691 ..   58707 +  -2.1  -2.77182   TGCATCAGGCGTCCA              GCCTGCC CGA GCCACGC              TGATTGCCTGTACGC  39 6
 CLH39_00265   59769 ..   59789 +  -2.4  -3.55548   ATTCACGGGCATCAG            CCGCCGTG CATGA CAAGCCGG            TTTACGGGCCTATTC  47 58
 CLH39_00270   62686 ..   62720 + -18.6  -5.14563   GGCTAAAACAAAAAA     CGCGGTGTTTGCTGCC AGG GGCAGTGCACACCGCG     TTTTTTAATAAAGCC 100 182
 CLH39_00285   64631 ..   64648 + -14.1  -3.48063   CAGGCATAAAGCAAA             CGGCGCC TTTC GGCGCCG              TTATGCATTTGCATC  88 285
 CLH39_00295   66583 ..   66611 +    -6   -3.9093   CAATTTGATGCAGAT       TGCGC-CAG-GGCG TGG TGCCACTGCGCGCG       TTCTTGTGTCCTGCA  64 140
 CLH39_00325   73542 ..   73572 +  -9.7  -2.77899   GAGAGCGTAGGGATG       CAAGCATCCTGCT GTTTG AGCCGGACGCTTG       TACTTGGTCCGGGGG  65 133
 CLH39_00345   77510 ..   77531 + -10.1  -4.54047   TCCAAAAGCAAAAAA           CCCCCTTGG TTTT CCAAGAGGG            TTTTATATGCCGTCA  90 167
 CLH39_00430   97237 ..   97274 + -19.3  -5.75599   TCCAGATTCAAGAGA   CACCACACACGCCTC ACCTGAAC GGGGCGTGTGTGGTG    TTTTTTTATCCTTTC 100 122
 CLH39_00445  101029 ..  101058 +  -8.6  -4.20769   GCCCCCAGGAACCAA       GCCGCG-CCTGAT CAAGC ATCAGTTCGCGGC       TTTGTCTTGGCCTGT  76 50
 CLH39_00455  103051 ..  103067 +  -2.9  -3.67417   CTGGCTGGACAAGCC              CGGGC CAACAGC GCCTG              TTTACGCTTCGATGT  52 206
 CLH39_00460  104492 ..  104512 + -11.1  -3.15544   CAGGCACCTTGGCAA            GCCACAACC TCT GGCTGTGGC            TTGCTCGCCATGCGA  74 42
 CLH39_00465  105704 ..  105719 + -10.4  -5.49809   AAAGGCTTTTGAAAA              GGACGC TTAG GCGTCC               TTTTTTTCGGCTTTG 100 54
 CLH39_00480  109048 ..  109058 +  -5.4  -2.60615   ACCACTCATACCGAG                 GAGA CTT TCTC                 ATGTTTGCAAGCCGT  47 64
 CLH39_00485 NONE
 CLH39_00490  110890 ..  110909 +  -6.4   -5.0916   CTACGCCTTCGGCTT            GCTGCCTCC CGA GGGGG-AGC            TTTTTGTCTTGGGGC  86 115
 CLH39_00550 NONE
 CLH39_00555 NONE
 CLH39_00560  126568 ..  126584 +  -7.9  -4.09685   CCAGTGCCTGGTACA              CCTCGCC ACC GGCGATG              TTTTGCGGAATGCCA  71 505
 CLH39_00575 NONE
 CLH39_00580 NONE
 CLH39_00585 NONE
 CLH39_00590  132882 ..  132897 +    -4  -2.83715   CGGGCGTACTGGTTC              TGGACCT GTA AGG-CCA              TCTCCTGGTCCTGGC  44 15
 CLH39_00595 NONE
 CLH39_00600  135425 ..  135461 +  -5.7  -5.72622   ACCACGCCCTGATGT    AAACCCAGGGCCGCAGC CTG GCTGCGGCCTTAACTTG    TTTTTTGTTTGTAGC 100 29
 CLH39_00605  136281 ..  136305 +  -7.7  -3.97368   CCAACGCCGCGACCG          GCACAGGCTTC ACA GGCGCCTGGGC          TTTATAAATTCCCAC  71 140
 CLH39_00635  141053 ..  141063 +  -6.8  -4.63486   GTCTGCCCTGAGCCA                 GAGG CCT CCTC                 TTTTCTTCAACCCAT  79 30
 CLH39_00640  142075 ..  142096 +  -4.4  -4.17958   TCGCTGGCACACGGC           GCAGGC TCTTTGCCCT GCCTGC            TTTGTTGCGCCTGTT  63 85
 CLH39_00645  143457 ..  143484 + -12.1  -5.40072   ATATCTGTTTTTATA        CGCCCCTCTACG CTAGC CGTA-AGGGGCG        TTTTTTTAACCACCG 100 116
 CLH39_00680  149188 ..  149214 + -12.4  -5.47821   TGCAGGCACAAAAAA         GCGCTCAAAC ACATTTC GTTTGAGCGC         TTTTTTTGACTGACT 100 78
        rpmH  155906 ..  155924 +  -5.2  -2.91695   AAGCCCGACTCCCAC             GATACGCA TCA TGCGTGCC             TCCTTTCCAGCTACG  49 85
        rnpA NONE
 CLH39_00715  156587 ..  156604 +  -5.5  -3.95787   CAGCTACGTTAAACT             GCTAAGC TTTT GCTCAGC              TTTATAAATGTGATA  61 92
 CLH39_00720  158315 ..  158334 + -13.6  -5.65177   CTCTGACACAAAAAA            CCCCGCTA CGTT TAGCGGGG             TTTTTTTATGCCTGT 100 45
 CLH39_00725  160122 ..  160151 +   -13  -5.78622   TAAGCCATCAAAGAA       TCGGCTCCCC-AT CTACA ATCGGGGAGCCGA       TTTTTTTTGCACTGG 100 58
 CLH39_00730  161026 ..  161049 +    -3  -2.80816   CCGCAAGAAGCGGCG          GCCTCCGGGCG TCT CGCGCA-AGGC          TATCGTGGGTGCCAG  41 468
 CLH39_00815  176213 ..  176242 +  -2.9  -4.65182   TAGACAGTTAGCTTT       TGA-CGCTTTGGTG GCA TACCAAAGAGCTCG       TTTATTTGCTTTGTC  66 53
 CLH39_00820  178172 ..  178189 + -11.3  -2.64794   AGCTGTACGTAGAAG             TGCTGCC GAGT GGCAGCA              TGGTCTAGCGTTAGC  70 298
 CLH39_00830  180183 ..  180205 +  -3.2  -3.04263   CACCAGCACAAAGAA           CAGCCTGGGT TTG ACCCTGACCG           TGTTCGAGGTGCCGT  44 453
 CLH39_00840 NONE
 CLH39_00845 NONE
 CLH39_00850 NONE
 CLH39_00855  186557 ..  186600 +    -8  -2.64099   TGCGGAGCAGCACCA CGGTAGATTGGCAGGTGCGC GAGA GCGTACGCGCCAAACTGCGG ATTCTGGTGCGGCGC  58 303
 CLH39_00875  189536 ..  189553 +  -4.1  -2.79831   GCCCTATCAAAGCTC             GTCCTCA TCGA TCAGGAC              TATGCTGAGCATTCC  44 159
 CLH39_00880  190088 ..  190107 +  -7.2  -3.39895   CCCCCAAGGACTCCC            GAAGCCAGT CGA AC-GGCTTC            TTACTTCATCAACAA  62 132
 CLH39_00890  194131 ..  194149 + -14.6  -2.71731   CTCCGAAACGTAAGA             GGCCGACT GTT AGTCGGCC             TCATTCGGAGATACA  82 44
 CLH39_00915  199340 ..  199368 +  -8.9  -5.52807   ACAGGGATTAAAAAA        CCCCATCACATGA TTT TCATATTATGGGG        TTTTTATTTATTCTT 100 117
 CLH39_00940  205809 ..  205819 +  -2.4  -4.18506   TCCCCGGAAAAAAAA                 GCGC TAA GCTC                 TTGTTTTAACGCTGC  57 198
 CLH39_00950 NONE
 CLH39_00955 NONE
 CLH39_00960 NONE
 CLH39_00965  213283 ..  213299 + -13.7  -5.28942   AGTTGATGTAAAAAA              GCCGACC TCT GGTCGGC              TTTTTCTTTGCCATG 100 71
 CLH39_00975  213943 ..  213960 +  -3.4  -3.53444   CAGCACTTTTCTAGA             GTCAGCC AGCAA GGC-GAC             TTTAGGAGAGGGTGA  49 39
 CLH39_00980  214070 ..  214091 +  -4.4  -3.06501   CTCCAGGTTAAAAAT           CTTTGGCC ACTCTG GGCTGAAG            TTGAATGCCCATGTG  48 35
 CLH39_00985 NONE
         tuf  215433 ..  215447 +  -4.2  -4.18018   TAATTTTGGGCGAAA               GAGGTT AAT ATCCTC               TTTTGCCTAAAAGCC  63 52
 CLH39_00995 NONE
 CLH39_01000 NONE
 CLH39_01005  216528 ..  216546 +  -3.1  -3.33696   TGAACTCGATTTCGA             TCAAGTC GAAAA GACCTGA             TTAATTACAACCCCC  46 7
        rplK NONE
 CLH39_01015  217935 ..  217961 + -12.4  -3.55548   TGCGCCGCATTCGGT         TGATGTTGGGAA GCC TTCCCGACATCG         TTTGAAGGAGTGTTC  82 213
 CLH39_01020  218498 ..  218509 +  -5.8   -4.4078   GCGATCAGAAAGAAG                CTGC GTAA GCAG                 TTTTCCTTCAGGAAA  71 18
 CLH39_01025  218977 ..  219007 + -15.4  -4.35524   AGAGTATCGATAGAT       GCCCGGGAATGCGT TTC AAGCCTTCCCGGGC       TTTTGCGTTTCCAGA 100 40
        rpoB NONE
        rpoC  227592 ..  227618 + -16.6    -5.252   TCGAGCTAAAAAAAA         TCCCCACATGGC CAG GCCACGTGGGGA         TTTTTTATGGCCGTC 100 118
 CLH39_01070 NONE
 CLH39_01075 NONE
        fusA  237209 ..  237225 +  -3.8  -2.73681   GCTCAACAATTTTTT              TGTTTT CCTGT AAAACA              TAATTGGGATAAATC  44 71
         tuf  238443 ..  238474 + -16.6  -3.44848   GTAATAAGCCTTGAT      CGCGGTGTGAAGGT GCAG ACCTTCCCGCCGCG       TCTTTGCTACCCCCA 100 37
 CLH39_01090  238924 ..  238943 + -13.6  -5.90981   TTACATCGAAAGAAA            CGCCATGC AACT GCATGGCG             TTTTTTTTCGTCTGC 100 60
 CLH39_01095 NONE
 CLH39_01100  242086 ..  242101 +  -7.6  -2.82516   ATATTTACTAGCTTA              GCCAAA AAGT TTTGGC               TATGGTCGTCGCGCA  56 176
 CLH39_01105 NONE
 CLH39_01110  243462 ..  243486 +  -2.1  -3.05268   CGCTCAGTTTGAGGA          GATGTTGGG ATGAACG CCGAACGTC          TATTGCAAGTAATTC  42 13
 CLH39_01115 NONE
 CLH39_01120 NONE
 CLH39_01125 NONE
 CLH39_01130 NONE
 CLH39_01135 NONE
 CLH39_01140 NONE
 CLH39_01145 NONE
 CLH39_01150  246948 ..  246971 + -13.2  -5.73339   CTGGTAGGTCAAAAA          CCCCGATCTG TTTA CAGATTGGGG           TTTTTTTATGCTTGT 100 75
 CLH39_01160 NONE
 CLH39_01165 NONE
 CLH39_01170 NONE
 CLH39_01175  252039 ..  252068 + -11.5  -3.53012   TTCTTGTCCGTCATT       GGCGCAGTCTGATC CGC GATCGG-CTGCGTC       TTTGCGACGCCCCAA  79 57
 CLH39_01180  253007 ..  253035 + -18.3  -4.75776   CAGAAAGATAAAAAA        GGCCCTCAACATT TGA GATGTTGAGGGCC        TTTTTAGATTCAGTT 100 198
 CLH39_01245  272922 ..  272933 +  -2.2  -2.94759   CGAGAAACCAGCCGG                GCTG TAAG TAGC                 TGCTTCTTGGCGTTA  41 19
 CLH39_01250 NONE
 CLH39_01255 NONE
 CLH39_01260 NONE
 CLH39_01265  277574 ..  277594 + -13.3  -5.42259   AGAAAGTCCATTTCT            GACTGCTGC TTG GCGGCAGTC            TTTTTTTAGGAATCA 100 158
 CLH39_01270  294158 ..  294185 + -14.2  -5.76633   CGGGTAGTGCCCAAG        CCCCACAAGCCT TTTT GGGTTTGTGGGG         TTTTTTTATGTCTGC 100 67
 CLH39_01275 NONE
 CLH39_01280  297443 ..  297453 +  -5.4  -4.20084   CCAAAACTGGTTGTG                 TGAC CCA GTCA                 TTTTGACTGGATCGT  66 251
 CLH39_01285 NONE
 CLH39_01290 NONE
 CLH39_01295 NONE
 CLH39_01300 NONE
 CLH39_01305 NONE
 CLH39_01310 NONE
 CLH39_01315 NONE
 CLH39_01320 NONE
 CLH39_01325 NONE
 CLH39_01330 NONE
 CLH39_01335 NONE
 CLH39_01340 NONE
 CLH39_01345 NONE
 CLH39_01350 NONE
 CLH39_01355 NONE
 CLH39_01360  304767 ..  304808 + -18.9  -2.62983   TACGCAATGCAGTAA TCGC-AGGCCCACTTCCCGA TTT TCGGCAAGTGGGCTTTGCGA TACTATCCCGCTGGC 100 61
 CLH39_01365  306016 ..  306043 +  -6.2   -3.2703   TAGAAGAACCGGATT        TACGCATGTCGC ATAA GCGGCATGCCAA         TTAGATTCATTATTT  55 173
 CLH39_01370  306489 ..  306506 + -11.3   -5.7946   CAGTAGTATTGAAAA             CGGACTC TCAG GAGTCCG              TTTTTTTATTGGCGG 100 57
 CLH39_01375  308035 ..  308047 +  -7.7  -4.45083   GCAGCAGCGTGGCAT                TCGCT AAG AGCGA                TTTTCTGGCTATCGG  79 19
 CLH39_01380  308785 ..  308807 + -10.6  -5.66684   GTTGCGGTGCAAGAG           GCTGTGCC ACACTAA GGCACAGC           TTTTTTTATCGCTTG 100 100
 CLH39_01385 NONE
 CLH39_01390 NONE
 CLH39_01395  312280 ..  312297 +  -9.1   -5.1925   ACACACAACAAAAAA             CGCAGCT CACG GGCTGCG              TTTTTTGCGTTCTGA 100 101
 CLH39_01410  314828 ..  314854 +  -9.5  -2.87931   GGCCTGCGTTAATCA        GTCCAAGGGGGCC ATT GGCCCCCT-G-AC        TGTCTGAAGCCTGAC  67 29
 CLH39_01415 NONE
        ccsB  318531 ..  318559 + -14.6  -5.65177   TGTAGAATTGGGAAA        CCCGAGTTTGGC TGAGT GCCGGACTCGGG        TTTTTTTGTGGCTGT 100 89
 CLH39_01445 NONE
 CLH39_01450 NONE
 CLH39_01455 NONE
 CLH39_01465  333993 ..  334018 + -11.9  -3.23853   ATGGCATGGATAAAA         CTGCCCTTCCCG GAG CGGGGAGGG-AG         TGTTAATTAAGGCAC  79 192
 CLH39_01470  334692 ..  334718 + -15.2  -5.29782   GGCAATACTAAAAAC         CCCCGGCGAATT TAA AATTCACCGGGG         TTTTTTATGCATCTC 100 113
 CLH39_01490 NONE
 CLH39_01495 NONE
 CLH39_01500 NONE
 CLH39_01505  341997 ..  342015 + -11.7  -5.27335   GATGAAATGAAAAAA             GGCCGAC ATGCA GTCGGCC             TTTTTGTTTCAGAAC 100 39
 CLH39_01520  344863 ..  344880 +  -9.8  -5.64274   AGGTGCCCACCAAAA             CCCCGG TATTTT CCGGGG              TTTTTTTCTGCCTGA 100 52
 CLH39_01525  346255 ..  346296 +  -6.3   -3.6502   GGGGGTTGTAAAATA GGCAGTTGCTGCGGGCCGC GAAA GCGGCCCTGATCATTGGCC  TTTGACTGAGAGCTG  59 25
 CLH39_01530  347024 ..  347042 +  -6.7  -4.09685   AACCGCATTGAGGAT             CTGGGAG TGATC TTCCCAG             TTTTGGCGGATGCGC  66 140
 CLH39_01545  350389 ..  350409 +  -6.7  -3.03124   CAGTGGCTTATAACG            GCAGCGGAG CGG CGCCCCTGC            TGTTGAAGGCTGAGC  56 275
 CLH39_01555 NONE
 CLH39_01560  353976 ..  353988 +  -6.9   -3.0246   ATACCCAGATCAAGA                CCGTG TAT CGCGG                TATCTGAATTTTATT  54 6
 CLH39_01565 NONE
 CLH39_01570  355663 ..  355678 +  -6.8  -3.56643   GAGCGGGATACGACG              GCGCAG ATGC TTGCGC               TTTGCCAAGTGTGGC  60 127
 CLH39_01580 NONE
 CLH39_01585 NONE
 CLH39_01590  356899 ..  356911 +  -6.9  -2.73124   GAGCTGGTAAAAGGA                GCGGC CAT GCTGC                ATTTGACCGATCAGC  53 31
 CLH39_01595 NONE
 CLH39_01600  358428 ..  358469 + -30.3  -5.27335   AAGTGCTCGCATACC GCCGGCCTCGGACTCTGGG ATAC CCCAGGGTTCGAGGCCGGC  TTTTTATTTGGAGAC 100 211
 CLH39_01605 NONE
 CLH39_01610  360675 ..  360694 +  -7.8  -6.14618   GTTCCCCCACTTTAG            GAGCGCTG ATGT TGGCGCTC             TTTTTTTATTTTGTC 100 54
 CLH39_01615  362189 ..  362203 +  -4.2  -3.53811   CGTACGTTTCATCAA               TCGTCT TGA AGGCGG               TTTCCAGAAACTCGG  51 120
 CLH39_01625  364541 ..  364576 + -14.8  -5.55664   CCGCAGAATTAAAGA    GTGTGTTTATGGCCCC TTCG GGGGCGGTAAACACGC     TTTTTTTAATGCTGA 100 57
 CLH39_01635 NONE
 CLH39_01640  368239 ..  368259 + -14.7  -5.75342   GCTTGTTGAGGTTTG            CCCCGTCCT TTT GGGACGGGG            TTTTTTTTCAAAAAA 100 54
 CLH39_01650 NONE
 CLH39_01655 NONE
 CLH39_01660  371979 ..  372001 +  -5.5  -3.90318   TCCATCCTTTGCCGA           CCACGTCAT AGATG AAGGCGTGG           TTTCTCAAGTGATCG  61 430
 CLH39_01685  376354 ..  376368 +  -7.1   -3.1855   CATCCAGAATGGTTT               GCAGC CGTCC GCTGC               TTAAATGTTCCCCCA  56 279
 CLH39_01695  378827 ..  378870 + -11.8  -3.28712   GATGCCCAAGGTGAA CGGGCCCCAAACGCCTGGG ACAGGTA TCCAGGT-TTTGGGGGCCG TTCTACACCCAGAGC  79 64
 CLH39_01705  380717 ..  380755 +  -3.6  -3.11634   TTGCTGTTCTTTCAT   GTGCAGGGCCTGCGCG ATTCCGG CGGGCGGTACCAGCAC   TTCAATGCTGTAAAA  45 279
 CLH39_01715 NONE
        hutH  384931 ..  384958 +   -20  -5.63103   GTCTCCACGAACTTG        TCCCTGGCATGG GTCC CCATGCCAGGGA         TTTTTTTACTTCACG 100 69
 CLH39_01730  386315 ..  386331 +  -9.5  -3.01712   CATTGCGTTGCTGGC              TGGTCAA TCG TTGACCA              TATTCCAGCAAGCGC  62 387
 CLH39_01750  390735 ..  390758 + -13.2  -4.26903   GTTTGGCAGGCAAGG          GACGCAGACT GATG GGTCTGCGTC           TTTTCATGCGCTGGC 100 46
 CLH39_01755  391845 ..  391861 +  -5.8  -2.58892   GGTGGTGGCCGCTTT              GGCTGG CACGA TCAGCC              TGGCTTGATCTGCAT  50 1
 CLH39_01760  393180 ..  393196 + -15.1  -2.87132   TGATCTGAACCGGAT              GGCCGCC AGG GGCGGCC              TGTCTGGCCGGGGCG  86 33
 CLH39_01765  393705 ..  393727 + -12.1  -3.78775   ATCTGGGTGCCCTTG           GTCATCACC GTTTG GGTGATGAC           TTTGCTGATCGAAAC  85 91
 CLH39_01775 NONE
 CLH39_01780 NONE
 CLH39_01785  398332 ..  398354 +  -8.3   -3.3452   TCTTTACCCATACAA           GGTGCCGCC AGCCG GGCAGCGCC           TTATAAAATACTCTC  65 65
 CLH39_01790  399567 ..  399590 + -10.2  -3.87815   TCGACATTGCTAAGA          GGGCGCGGGC ATCA GCCTGTGTCC           TTTATCCCGGTCCAG  82 41
        fghA  400583 ..  400597 +    -5  -4.19746   TGATCGCTGGATAAA               CAAGGT CGC ACTTTG               TTATTTTCAGGTGGG  66 38
        rpoH  401916 ..  401936 + -12.6  -5.78622   GAAGCGGATGTTTAC            GGGACACC AGCTA GGTGTCCC            TTTTTTTTGCCCTGA 100 188
 CLH39_01815  407506 ..  407525 + -11.4  -5.45652   CAGGCATAAAAAAAA            GCGAGCCG ATCA TGGCTCGC             TTTTTTATTGGGCGT 100 32
 CLH39_01840  411079 ..  411090 +  -5.8  -2.84878   TGGGTTGGATTGAAA                GCAC TGGC GTGC                 CTTTGGCTTGAAGGA  51 3
 CLH39_01865 NONE
 CLH39_01870  417297 ..  417309 +  -3.3  -2.90341   AAAAGAACTGATCGA                CCAAC CTT GTAGG                TAAATTTTTATGCTT  42 30
        glmU  418715 ..  418739 + -10.7  -2.50935   CCCATCTTTGGCGTC          CCTCCCTTTGC ATC GCAAGGGGAGC          ATTGCTGCGTACGCT  67 51
 CLH39_01880  420377 ..  420387 +  -6.8  -3.15544   ACAATCGCCGTCAAA                 CTGG GGC CCAG                 TTGCTCCGGGTCCAG  54 486
        glmS  422845 ..  422855 +  -6.8  -3.89501   TTACTAGTCAGCAAG                 GCCT TTG AGGC                 TTTGTAGCAATATTG  67 272
 CLH39_01895  424198 ..  424210 +  -3.3  -4.24342   TGTACTGCCTCGGCA                ACAGC TGC GCTGG                TTTGTTGATCAAAAA  60 220
 CLH39_01915  429401 ..  429412 +  -4.4  -3.14284   GTTGGCCGGTAAATA                TAGG GTTA CCTA                 ATTTGTTGCTGCAAA  48 13
        rfbA NONE
        rfbC NONE
        rfbD  435350 ..  435368 +  -5.3  -3.20941   TCGTGTTACCCTTTG            GGCCTGAT TTGT ATC-GGCC             TCTTGCTCGTTCATC  53 52
 CLH39_01950  436857 ..  436869 +  -6.9  -2.94099   TGCTCCCGTACTAGC                GGGGC TAA GCCTC                TATCTGGTGACAGGC  54 251
 CLH39_01960 NONE
 CLH39_01965  440336 ..  440354 +  -3.8  -3.08508   ATGCAAAAGCAGGTT             CCGGGTTT TGG AGACTTGG             TGGTTTTAGACAGTA  46 141
 CLH39_01970  443032 ..  443044 +  -6.3  -3.34192   GCATCTGTCCATTGA                TTACC AGT GGTAA                TTCCTTCCCCCACTT  57 13
 CLH39_01975  444360 ..  444390 + -17.6  -5.14477   AAGGTGGGACCCAAA       GCCCGGGTTTGGCG TGA TGCCGAACTCGGGC       TTTTTTACGTGTATG 100 68
 CLH39_01980  444978 ..  445026 +  -9.1  -3.01243   CGGGATAGTTAAAAA ACGTTCATAGATTAGAGTTTATA TGA TATAAACGGTTATCTATGAACGA TAATTGTTGTCTGCA  63 57
 CLH39_01985  446654 ..  446684 + -11.8  -3.64703   TGAGGTACTTGCGAA       GCCCTGATTCGGCG TCA TGCTGAGCCAGGGC       TTTCAATCGCACAAA  82 81
 CLH39_01990  448017 ..  448035 +    -3  -2.64218   AAACGAATGAAGGGA             GAGAGGAA AGA TTCCCCCC             CTTCTCATACCGCAT  40 62
 CLH39_01995 NONE
 CLH39_02000 NONE
 CLH39_02005  451228 ..  451256 + -10.2  -4.11394   CGGCACACTGAAAGA        TAGGCCACGCCC GCCCG GGGCTAGGCCTA        TTTTCGGGATGAGGT  84 93
 CLH39_02010  453239 ..  453258 +  -8.6  -3.55622   CACCTGATGCACCAC            CTGTGTCA CCGC TGGCACAG             TTTCACCGCCTTAAA  67 34
 CLH39_02015  455266 ..  455292 + -11.7  -6.15259   CTTGTTCTGATTTTG         GCCAGATTATC AATTC GATGATCTGGC         TTTTTTTTTAGCTTG 100 85
 CLH39_02020  456163 ..  456174 +    -3  -2.55074   TAAAAGTTCCGTCAT                CAAT CCTC ATTG                 TGAATTCCCGTTGAA  40 38
 CLH39_02025  456433 ..  456452 +   -15  -5.38958   CCCAGGACTACAAAA            CGCCCTGC ATAT GCAGGGCG             TTTTTCTTTGTGCCT 100 57
 CLH39_02035  458386 ..  458411 + -15.4  -2.94099   GTAGTGCAAGGCCCG         CGGGGGCCGC ATTCAG GTGGCCCCCG          TCTCTCATCCACAGG  86 37
 CLH39_02040  459111 ..  459134 +  -6.6  -3.05844   CAGGAACAGCTGGAT          TCGCAGCGTT AATC AACGCCGCGC           TCTTGCAGTACCGGG  56 14
 CLH39_02045  459838 ..  459863 + -16.9    -4.323   AATCGCTTCGGCGCT         GCGCTGGTCAC TTGA GTGGCCAGCGC          TTTTGGCTGTTTGAA 100 40
 CLH39_02050 NONE
 CLH39_02055 NONE
 CLH39_02060  461971 ..  462000 + -14.5  -4.82901   AGCCGCCACAAAAAA       GCCTGAATCTGACT TGA AG-CAGATTCAGGC       TTTTTCTACGGGAAC 100 87
 CLH39_02075  466457 ..  466493 +  -2.2  -3.06796   CGGACAAGAAAACAG    TCGCTGTGATCTGG GGCGGTCAA CCAGGGCAGGGCGA    TTGCATCACATGCAG  42 50
 CLH39_02080 NONE
 CLH39_02085 NONE
 CLH39_02090 NONE
        hutG  470494 ..  470512 +  -8.2  -3.21099   CGCGACGCGCTGGCC             TTTGCGAC CGA GTCGTAAA             TTCATCCTGAGCCCC  64 8
 CLH39_02100  471503 ..  471523 +  -7.5   -3.1506   GCGGTTACGTCCATT            GCGCTTGGC CTT GTAAAGCGC            TTCGTCCGCCAGTTT  54 88
        acnA  476081 ..  476127 + -18.8  -3.53012   GCGTGCGCATGCACG CCCAACAGTGCGTCAGTTGTGC CCT GTGCAACTGGCGCACTGGTGTG TTTGAAGGGCCGGCA 100 59
 CLH39_02115  478053 ..  478068 +  -4.6  -3.56643   ACACGACCTTCATTG              CGCAGA TTGA TCAGCG               TTTCCCAAGTCTGGA  53 488
        panB NONE
 CLH39_02130  480837 ..  480851 +    -7  -3.06133   GGTGACATTTTCCAG               GCTGCC ACC GGCCGC               TTGCGTGGCCCGTTG  54 269
 CLH39_02150  483686 ..  483698 +  -6.3  -3.12948   ATCACGAATCAGGTG                GCTAA GGG TTAGC                TCTGATTTGTTGTCG  53 98
 CLH39_02155 NONE
        ilvD NONE
 CLH39_02165 NONE
 CLH39_02170 NONE
 CLH39_02175 NONE
 CLH39_02180 NONE
 CLH39_02185 NONE
 CLH39_02190 NONE
 CLH39_02195 NONE
 CLH39_02200  493173 ..  493183 +  -6.8  -2.62263   TAAGGTGGAGTAGCG                 GGCT GGC AGCC                 TCATGTCCGGCAGAT  52 38
 CLH39_02205  493709 ..  493752 + -21.4  -3.21218   AGATTCCGACAGCAG AAAAACAAAACGCCAAGCTT TCAA AAGCTTGGCGTTTTGTTTTA TTCGTGGTGCCGGCT 100 46
 CLH39_02215  495060 ..  495081 +  -3.7  -2.79276   TGCTGCTAACGGGGT           GTTGGACCAG TTG CTGG-CCAAG           TAATTCATGAGTCGT  44 1
        cysT NONE
        cysW  497061 ..  497082 + -14.5  -4.99035   TGGAACCCAAATAAA           TAGAGCCCC ATGC GGGGCTCTA            TTTTTGTCTGCGTCG 100 266
        mscL  501838 ..  501853 + -10.4  -5.42975   TTATCAAAGCTTTAA              GGTGCC TTTC GGCACC               TTTTTGTTTATGTAA 100 51
 CLH39_02265  504151 ..  504193 +  -9.9   -4.2349   GGTATCTAAAAAAAA TGGCTCTCTGGGC-TACTCC TTTT GGAGCAAGGCAAGAGAGCCA TTTTGGGTCTGCACG  83 208
 CLH39_02385 NONE
 CLH39_02390  524564 ..  524579 + -11.8   -5.4505   TCGTTGCTGGACAAA              GCCGCC TTCG GGCGGC               TTTTTTATTGGGGCG 100 64
 CLH39_02395 NONE
 CLH39_02400 NONE
 CLH39_02405  528322 ..  528353 +  -5.7  -3.63744   TCCCAAAGGACAAGT      CCCATGCGCATCG TAAAGC CCTTGCGCTTGGG       TGTTTTGGCACGCCC  59 142
 CLH39_02410  530827 ..  530842 +  -4.6  -2.78384   ACGGCACGTCGCGAT              CCTGCC GGGG GGCAAG               TCTGATGGACGCACA  45 5
 CLH39_02415 NONE
 CLH39_02420 NONE
 CLH39_02425  533205 ..  533224 +  -9.2   -5.5454   TTTTTCCTTTGAAAA            GCGCTGCC TGCG GGTGGCGC             TTTTTCTTTATTTGC 100 54
 CLH39_02430  534405 ..  534424 +   -10   -3.3782   TTCATGCCTCGATCC            GAAGTGGC GACA GCCGCTTC             TTAATTCCATAAATC  72 2
 CLH39_02435 NONE
 CLH39_02440  536530 ..  536544 +  -5.6  -3.63515   ACTGATTCCCACCCT               GGCCTT TTG ATGGCC               TTATTCGACCTCCAA  56 36
 CLH39_02445  537047 ..  537058 +  -3.6  -3.36823   AAGCAAAACAAAGAA                GCCT GATC GGGC                 TTGGGTTTTCAGGCA  50 20
 CLH39_02450 NONE
        vasA NONE
 CLH39_02460  540632 ..  540663 +  -6.4  -2.65264   CTCCGGGGCGCGACC      CAACTCTGGCTGCC AACT GGCTGCCGGAATGG       TGCTGTCGGTGCTGG  48 110
 CLH39_02475  542196 ..  542209 +  -2.3  -3.40073   GCAATTACGCAAGAA               CGCCA TTCA TGTCG                TTGATTGATGGGCGT  46 4
 CLH39_02480 NONE
 CLH39_02485 NONE
        icmF NONE
 CLH39_02495  549211 ..  549243 + -12.8  -3.48024   AACTCTGCCAAGGAT     GTCCAGGGTC-GCCC TTTG GGGCAGATTCTGGAC      TCTTTGCTGCTGGAC  82 61
 CLH39_02500  550866 ..  550886 +  -5.4  -3.09492   GAAGACGCTCGAAGG            CGGCGTAG CTGAC TTACGTCG            TCTTGCGCTTGCCGA  51 115
 CLH39_02515  554286 ..  554314 + -17.5  -3.53761   CCGGGCGATAAAAAA        CCGGCCTGTCC CATTCAT GGACAGGCCGG        TTTCAAGACAAGTTG 100 50
 CLH39_02525 NONE
 CLH39_02530 NONE
 CLH39_02535 NONE
 CLH39_02540  567759 ..  567783 +  -3.6  -2.89797   CGCTTCACACAACAG          TTGGTGATGA AATGA TCGTCGTCAA          TGATGTTTATAAGCG  45 11
 CLH39_02545  568485 ..  568499 +  -2.8  -4.18506   CGCTCCCGATAAGGC               TGTTTC AAA GAAACC               TTCTTTTGGGGCTCG  59 78
 CLH39_02550 NONE
 CLH39_02555 NONE
 CLH39_02560 NONE
 CLH39_02565 NONE
 CLH39_02570 NONE
 CLH39_02575  579658 ..  579674 +  -2.2  -3.31263   ACTGTAGATACCGAG              GCTCTT CCTAA ACGAGC              TTCTGACAATCACGT  44 96
 CLH39_02580 NONE
 CLH39_02585 NONE
 CLH39_02590 NONE
 CLH39_02595  583933 ..  583947 +  -4.2   -3.3334   CGCCTCCAGGAGCTG               GCTGAT GTG GTCGGC               TTCTAGGGTGCGCTT  50 5
 CLH39_02600 NONE
 CLH39_02605 NONE
 CLH39_02610  588064 ..  588084 + -15.5  -3.12856   TAGATACAAAAATAT            TGCTGGGAC TGT GTCCCAGCA            TAGTTTCTCTTACTT  85 345
 CLH39_02685  606209 ..  606234 +  -6.7  -3.90112   AACCGGGTTTGAAGC         CCGGCCGTGCC ACCG GGCACGGATGC          TTTCCTTCAAGAGGC  64 151
 CLH39_02740 NONE
 CLH39_02745  619202 ..  619218 +  -3.6  -2.73364   CGTCGTCTGGGACAG              TGGCGG GAGGA CAGCCA              TGCTTGAGCTAAGCC  44 2
 CLH39_02750 NONE
 CLH39_02755 NONE
 CLH39_02760  622862 ..  622880 +  -5.9  -3.87994   CTTTCATTGCACGGT             CCCTTGG ATCGG CCACGGG             TTTATGACGCTGCGT  64 396
 CLH39_02765  623717 ..  623751 + -19.3  -4.65895   GGCTCAAAAGCAGTT     CCGGCCCCATCACGT TTATC GCGCGATGGGGCCGG     TTTTTGGGTGCAGGA 100 104
 CLH39_02780  627168 ..  627180 +  -3.3  -4.78572   TTTTCTTTTCTACTA                TCCGC CAT GCGAA                TTTTATTGATTGAAG  70 86
 CLH39_02785 NONE
 CLH39_02790  629292 ..  629319 +  -4.3  -3.07655   CTTGAACACTGATTG        GATTGTTCAGGG TATAC CCTTGAA-AATC        GTGTTTTTTGGCGAA  48 29
 CLH39_02795  630411 ..  630448 + -10.5   -2.8805   CAAGAAGTAAGTTTT   TACGGTACTCCCGGC-CG GTT TGCGCCGGGAGTGCCGCC   TGTCTGCCCCGTCGT  70 31
 CLH39_02800 NONE
 CLH39_02805  632466 ..  632486 + -12.5  -4.36914   GACATAAATAGGGGG            ACCCCACCG CTT CGGTGGGGC            TTTTATCGGGAGAAA 100 34
 CLH39_02810  633607 ..  633625 + -11.7  -6.09196   AGCCTGATGAAAAAA             GCCCGGT GTCTG ACCGGGC             TTTTTTTCTTTTGCA 100 55
 CLH39_02845  640092 ..  640109 +  -9.1  -2.91264   CGTCTTATCAGTGAA             GGGCACG GTTT TGTGCCC              TGTGTCCCTGGCGAC  63 64
 CLH39_02850  641377 ..  641397 +  -7.5  -4.62085   GCCTTGGCCAAGGGC            GTCTGCGCA CCA TGCGCGTAC            TTATTTTTTGGAACT  82 284
 CLH39_02855  643832 ..  643852 + -10.4  -3.36273   AGTTCTAAAACAAAA            GCCCTGGT CTGAT GCCAGGGC            TTGATATTGCGAAGC  75 33
 CLH39_02865  645568 ..  645617 + -25.3  -3.06815   GTCGGTAAGCGCTGG CAAAAGCCCCACACAAATCGGAC ACGG GACCGATTTGTGTGGGGCTTTTC TATATTCAAACAGGT 100 83
 CLH39_02870  647968 ..  647989 +  -3.7  -4.63486   CTCCTTCTGACCCCC           TTAGCCAGA ACAA TCTGCCTGA            TTTTGTTCCCGGAGT  68 31
 CLH39_02875 NONE
 CLH39_02880  650467 ..  650481 +  -4.2  -3.45023   GCTGGCGTCGGCTGG               CCATCA GGG TGCTGG               TTGTGGTGCTGGTGG  52 103
 CLH39_02885  651109 ..  651124 +  -3.2  -3.50734   TCCGAGCCCAGGTAA              C-GGGTC GTA GGCCCAG              TTGATTGTCTGCCTT  49 6
 CLH39_02890 NONE
 CLH39_02895  653598 ..  653608 +  -2.4  -2.89824   GAGCAGCCGCCCGTT                 GCGC CCT GAGC                 CTTATTGATTGATAC  41 17
 CLH39_02900 NONE
 CLH39_02905 NONE
 CLH39_02910 NONE
 CLH39_02915 NONE
 CLH39_02920 NONE
 CLH39_02925 NONE
 CLH39_02930 NONE
 CLH39_02935 NONE
 CLH39_02940  672550 ..  672592 + -10.2  -4.63048   GGATTTTGAGGTTTT TATCGCTAATATCGATAA TTTAATT TTATCGGTATTATCGATA TTTGTTGTTTATCGA 100 32
 CLH39_02945 NONE
 CLH39_02950  674383 ..  674402 + -13.6  -4.90013   GTAGAAAAACAAAAA            GCCCAGTC AGAT GACTGGGC             TTTTTGCTTGAATTC 100 162
 CLH39_02960  676129 ..  676139 +  -5.4  -3.20832   GCTTTGAACTGCGCC                 CAGA CCC TCTG                 ATTTTCCCTTTAGGC  53 90
 CLH39_02965 NONE
        prmC NONE
        grxD NONE
 CLH39_02980  679158 ..  679193 + -10.4   -3.6761   CTGTCGCTTGTGTAT    TGGCAGGCGGC-AAGCG CTA CGCTAAGCCGCGTGTCA    TGTTTATTGGCCGGA  80 146
 CLH39_03000  683406 ..  683441 +  -4.8  -2.93853   TTGAGATTGCGTATA    TCAGCCTTGCAT TAAGTATCAAAC AAGCAAGGCTGA     ATTTGCTTACAACAA  47 126
 CLH39_03005 NONE
 CLH39_03010  685044 ..  685070 +  -2.8   -4.5187   AATGGTGTCTGGTTG         GGGGGAGCAGGC TTA GCTTGCTAACGC         TTTGATTTTTTTGAA  64 58
 CLH39_03015  685409 ..  685440 +  -4.4  -3.36492   AGGCAGTCGTCGTTA      GCGGTGTGTTGCTCG GTT TGATC-ATGCACCGC      TTGTCGACTTGAACA  52 76
 CLH39_03020 NONE
 CLH39_03025 NONE
 CLH39_03030  688126 ..  688148 +  -8.3  -2.71144   CTAATCATTGTTGGC           AGGCGCCGG AAACC CCGGCGTCA           TGATTAGCGGGAGTC  58 37
 CLH39_03035  689094 ..  689110 +  -5.7  -2.94099   GAAATCTCTGAAATC              GTGGGGG GTG CCGCCGC              TGTGTAATCACGGCA  52 2
        atpD NONE
 CLH39_03045  691037 ..  691072 + -19.2  -3.58536   CAAGTCGGTAGCATC    CGTGAAAAAGCCACCC TTAG GGGTGGCTTTTTTGCG     TTTGCGGGTCGGTTT 100 44
 CLH39_03050  692312 ..  692341 + -11.3  -3.23711   AAGCAAGTTTGCCCG       CCGCAGCACCCGC AACT GCGGGTGCCCTGG        TTGATGCCTTGTGGC  76 56
 CLH39_03055 NONE
 CLH39_03060  693855 ..  693873 + -12.4  -4.71418   ATGCAATAAGACATA             CGGCCCAT GCA GTGGGCCG             TTTCTTTTGCCTGTT 100 53
        hpaI  694898 ..  694931 +  -5.2  -4.15044   CTGCTTATTAGACGA     TATGACCTTGGCCG TAGCAC CGGCTAAGGTCGGC      TTTCTTAAGCGCCGC  66 108
 CLH39_03100 NONE
 CLH39_03105 NONE
 CLH39_03110  706105 ..  706116 +  -4.4  -2.52946   GATAATGCGTAAAAA                TCAC GTAG GTGA                 CGTTTTATGGCCAGA  44 29
 CLH39_03115  706899 ..  706918 +   -15  -3.60151   GCCCGGGGGGATTGA            GGCGGCCT TTTC AGGCCGCC             TTGTCGTTTAGAGAG  91 106
 CLH39_03135  711804 ..  711819 +  -4.6  -4.25458   GTTGCAGGCCGAATA              CCGCTT CTAA ATGCGG               TTTATTCCTGGGGTT  63 16
 CLH39_03145  713580 ..  713595 +  -3.9  -4.90296   AGCCCTGTATACTTC              GTCGC TTGTTC GCGGC               TTTTTCTGCACTTTT  72 39
 CLH39_03150  714182 ..  714230 + -22.8  -2.60161   TTTGAGTGATGGCTG CAAAGAAAACGGCCCTGCAAAT CTTGA ATTTGCAGGGCCGTTTTTTTCG ATCTTGTCCTTACTC 100 116
 CLH39_03180 NONE
 CLH39_03185  720117 ..  720147 +    -6  -3.12668   ACTCTTATAATGCAT       GGTCGGGTCAGCTC CGG GAGGTGGCCCCGTC       TTGAATCTGAAAATA  53 132
 CLH39_03190 NONE
 CLH39_03195  722830 ..  722846 +  -9.3  -2.80492   CTGTGCCTGGGGCAG              GCGGGGC AGA GCGCCGC              TCGTTAATGCTCATG  61 383
 CLH39_03205  725054 ..  725065 +  -7.2  -3.28924   ATTCAGCAAGGGGAG                CGCC AGCT GGCG                 TTCTAAGCAGGCCTA  61 8
        rsmI  730566 ..  730579 +  -3.1  -4.21194   CGGCCAAGGCGTCCG               GCGTGG GCT CCA-GC               TTTTCGGTAATCACC  60 417
 CLH39_03295 NONE
 CLH39_03300 NONE
        cydB NONE
 CLH39_03310  741668 ..  741687 + -10.7  -3.09516   CAATTTTCCAGCCGC            GCCCGCA CGGCTT TGCGGGC             TTCCATGCTGGCCCC  71 80
        cydD  743310 ..  743321 +  -2.2  -2.95475   AAGGAGTCCTGACGG                CATG AAAG CGTG                 GTTTCGTCTCTTAGG  41 21
        cydC  745128 ..  745152 +  -3.4  -4.73682   TACACTTGCAACGTA          TCCAAGTGCG CCCTT CGCGCCCGGA          TTTTCTGTTGTAGAA  66 148
 CLH39_03325  745771 ..  745799 + -13.2  -4.86133   GTTTTGTAGCCTGAA        TCCCTGCCATGC CCGGA GCATCGCAGGGA        TTTTTCATGTCTGTC 100 69
        ilvA  759274 ..  759297 + -15.4  -5.45652   CAGACCAAATGAAAA          CACCTCGCTT GGAA AAGCGAGGTG           TTTTTTATTGGGGCT 100 77
 CLH39_03395  764791 ..  764815 +  -8.6  -5.43414   TTCCCTCTCTATATA         C-AGCGGCACC TTCT GGTGCCGTTCG          TTTTTTGTCTGTAAT 100 50
 CLH39_03400  765989 ..  766014 + -11.9   -3.7511   CTCTATCTATACAGA         CAGCCGCCT TCTTACCC AGGCGGCTG          TTCTGTTATGAGCGC  85 42
 CLH39_03405 NONE
 CLH39_03410  768423 ..  768446 +   -11  -2.72461   CGATAGACGCAGGTC          CGCCAGCTGA TTGC TAAGCTGGCG           CTTTCCGGCGCCTTC  71 107
 CLH39_03415 NONE
       rfaE2  769897 ..  769914 +  -8.4  -5.98781   AATTGATGTGTTGAA             TCCCGG CTTGGT CCGGGA              TTTTTTTTGCTTCTA 100 53
 CLH39_03450  775435 ..  775489 +   -13  -3.72576   TTTTCTGTTCAACCT GTCACAGCAGACCAGCCCATG-CGGGG TTCG CACCGTCATGGAC-GG-CTGCTGTGGC TTTCATCAACCCAAA  85 58
 CLH39_03460  776776 ..  776797 +  -8.6  -3.84961   TGAAACACCGGGGCT           GGCTGCGC TAGAGC GCGCTGCC            TTTGATACTTAAATG  72 15
 CLH39_03465 NONE
 CLH39_03470 NONE
 CLH39_03475  779028 ..  779043 +  -3.2  -3.70843   AGGCGCTAACTCCTA              CCCGAA TCAA TTCGCG               ATTTTTGTCTTTCCA  52 68
 CLH39_03480  781042 ..  781061 +  -7.9  -4.64763   TGCGAAAATACTGTT            GGTGCAA AAACCG TTGCACC             TTCTTTTTTAACTAC  82 218
 CLH39_03485 NONE
 CLH39_03490 NONE
 CLH39_03495 NONE
 CLH39_03500  783410 ..  783425 +  -8.2  -3.28791   ATGGTCCCGAAGAAT              GCGCCG CCTT TGGCGC               TTGTGAAGACGCCGT  64 104
 CLH39_03505  786093 ..  786109 +  -5.1  -3.58343   ACGGCAGCATGGCGA              GCGTAGA TGT TTTGCGC              TTTGCAGGTGGTCAG  53 300
 CLH39_03520 NONE
 CLH39_03525  793922 ..  793957 + -16.2  -3.20348   GGCGTAAGCGCAGCT    TGAGCAAGACAGCAGC TTGA GCCGCTGTCTTGCTCC     TTCAGTCTTGCTGGC 100 34
 CLH39_03535 NONE
 CLH39_03540  796554 ..  796570 +  -2.9  -5.03715   CGATGGGCCTGATCT              TATTCCG TAG CGGAGAA              TTTTTTGAAAGTCGT  73 16
 CLH39_03545  797449 ..  797466 +  -9.9  -5.76633   TGTTTGGTGAGAAAA             GCACAGT TTTT ACTGTGC              TTTTTTTATATCTGC 100 51
 CLH39_03550  798941 ..  798963 +  -7.6   -3.5511   CACGGGCGGTGCCGC           TACCTTGCGC TTG GCGCAGGGCG           TCTTTCTGGGTGGAG  62 518
 CLH39_03560 NONE
 CLH39_03565  800673 ..  800685 +  -5.5  -2.62263   TGCCGCTTTTATACT                TGCTG TGC CAGCG                TGGTCTAGCAGGGAT  47 67
 CLH39_03570  802128 ..  802142 +  -3.5  -3.36228   TGCAAGCGAGTAAGC               CGTGA GCATG TCGCG               TATCTTTATCCTGCG  50 28
 CLH39_03575 NONE
 CLH39_03580 NONE
 CLH39_03585  809895 ..  809912 +  -7.7  -3.65581   GTTTGGTTTGATGTG             GTTCGGC GTTG GCTGAAC              TTCTTGGCGCTTGGT  67 122
 CLH39_03605  813843 ..  813858 + -11.8  -5.67063   TCCAGCCTTTCCCAA              CCCGCC ACAT GGCGGG               TTTTTTTGTAATAAA 100 44
        gltS  815352 ..  815390 + -15.3  -4.74453   TCGCGGCCCTTGTCA   GACAGCCCCTTGGATCG ATATC CGGTCCCAGGGGCTTTC   TTTTTACCTGTGTTG 100 70
 CLH39_03615  816709 ..  816728 +  -5.7  -2.74012   CCAGGACTTTTCAGG            CCAG-GCC AATGC GGCGCTGG            TGGTTACGCTAATGG  47 406
 CLH39_03630  821208 ..  821221 +  -9.5  -6.15536   CGTCTATGAAAAAAA               CCGCC TTCG GGCGG                TTTTTTTTGTTGCTT 100 78
        nirK  822660 ..  822686 +  -7.3  -3.55444   CAGAAAACGAAGTAT        CAGCCAGGCATG CATT CATGCC-GACTG         TTTAAAGGGTAAACC  64 178
 CLH39_03640  823024 ..  823041 +  -8.4  -4.60041   TACATGATTGAAAAA             GCCAGC TAAGGC GCTGGC              TTTTTCAGGCTGGAT  86 17
 CLH39_03660 NONE
 CLH39_03665  827069 ..  827088 + -13.6  -5.00642   TCAGCAGTAAAAAAA            CACCAGGC CTTG GCCTGGTG             TTTTTGTATCCGTTA 100 65
 CLH39_03685  831729 ..  831780 +  -3.1  -2.76263   ATTCATTTACGATTG ATC-TTTGCTTGGCCTTCAC-GGCAG TGT CTGCCTGTGGGGGC-AAGCGATCGAG TGCTTGAGTAATGCG  41 25
 CLH39_03690 NONE
        mreD NONE
        mrdA NONE
 CLH39_03705  836261 ..  836280 + -10.7   -3.0634   CATAGGCGCCGCTCC            TCCCCGG ATTAGG CCGGGGA             TCTTGGCATCAGCTT  71 36
 CLH39_03730 NONE
 CLH39_03735 NONE
 CLH39_03740  842592 ..  842604 +  -4.8  -3.56704   CAGGTAGCAAAGCCT                TGGG TAAGT CCCA                TTGCTTTGCTGGCCA  54 43
 CLH39_03745  843387 ..  843419 +  -9.2  -5.27335   AGGATCAGTGGCTGC      TCTGTATGGGCTGC CTTGT GCAGCCCATATGCA      TTTTTATTTCAAGGA 100 40
 CLH39_03750  844409 ..  844427 +   -11  -3.39668   CAAAGAAGTCGTTGC             CGACTCGG GTG CCGAGTTG             TTCTAAGCTTTCAAG  77 1
 CLH39_03755  845314 ..  845333 + -13.6  -6.25578   GCGTGCTGACAAAAG            GCCCGGTT TTTT AACCGGGC             TTTTTTTTGTTTGAT 100 62
 CLH39_03780  850416 ..  850442 + -14.4  -4.28111   AGGGCAGTTGAAAAA         GGCCCTGTCGGT TAT ACCGGCAGAGCC         TTTGTTCATGCTGTG 100 59
 CLH39_03810 NONE
 CLH39_03815  856046 ..  856072 + -15.9  -5.93809   GTCCGTAAGGAAAAA         CCGTCTCCACC GATTG GGTGGAGGCGG         TTTTTTTTATCAGGA 100 65
 CLH39_03830  860337 ..  860353 + -10.8  -5.43414   AGCGTATAAAAAAAA              GCGGGC ATATA GCCCGC              TTTTTTGTGTCTGGT 100 47
 CLH39_03850 NONE
 CLH39_03855 NONE
 CLH39_03860 NONE
 CLH39_03865  865678 ..  865691 +  -3.7  -3.61398   CTTGTAGCCCAGCAT               CCCAG CGAT CCGGG                TTGTTGCCGAACAAC  51 363
 CLH39_03910  874551 ..  874569 +  -5.3  -2.91593   TGGGACCAATGCTAA             CTGTTTG TAAGC CAAGCAG             GTTTATGGACAAATG  49 106
        aroQ NONE
        accB  875595 ..  875608 +  -5.3  -3.24411   GTCAGACTCTGTTCG               TCATC GGTT GATGA                TATGTTTGAAAAAAT  53 15
        accC  877011 ..  877039 +   -14  -3.87373   AAGAATGATGACTAC        GTAAAACAGGGG CGAGC CCCCTGTTTTGC        TTTATGGAAACTATG  93 77
 CLH39_03930  877959 ..  877969 +  -2.4  -2.57132   TGGGTGTGTTTGGCT                 GGTC AAC GCCC                 GTTATAAGACGGCAG  39 8
 CLH39_03935 NONE
 CLH39_03940  880182 ..  880210 +  -2.3  -3.47311   AACAGCACTATGGTA        TTGAGCGCAGTCT GTA AAAGAGCGCTCGA        TGGTTTTTTATGATT  46 9
 CLH39_03945  880778 ..  880794 + -15.1  -5.42862   TTTGTGCATAAAGAA              CCCGGCC ATT GGCCGGG              TTTTTTTACGCCTGT 100 56
 CLH39_03970  888305 ..  888323 +  -6.6  -2.88544   AATAATCAGGATTCG             CCGGCCTG TGG TGGGTCGG             TATGTACGCATGAAG  54 80
 CLH39_03975  888882 ..  888904 +   -17  -5.51046   TTGCTTGAATGATTC           CTGGCCGTCC TGG GGGCGGCCAG           TTTTTTGTCTGTTTC 100 48
 CLH39_03980  889635 ..  889656 + -14.5   -4.0492   ACCAAGCAAAAAGAA           GGGCATCTC GAAT GAGATGCCC            TTTATGTAAGCCTTA 100 176
 CLH39_04010  898969 ..  898982 +  -4.5  -3.68569   TCGGATTAGGCACAG               GCAGG CCTG TCTGC                TTGTTAGGTAAATAC  56 32
 CLH39_04015  901245 ..  901266 + -13.7  -5.84432   AAGCTGAATAAGAAA           CGCCGCTGT GATT GCAGCGGCG            TTTTTTTGTCTTGTG 100 42
 CLH39_04030  904020 ..  904054 + -15.1  -3.58905   ATAAACAGATGTTTA    CGGCCTGAGTTCGGCA TTGC TTCCGA-CTCAGGCCG     TTCTCTATGGAGCAT  91 103
 CLH39_04035  905387 ..  905414 + -16.4  -5.27923   GGCCAGTTTTGTTAA        CCCCTGTTTTCC ACTT GGAAAGCAGGGG         TTTTTTATGGGCTTC 100 86
 CLH39_04040 NONE
 CLH39_04045  906515 ..  906544 + -19.5  -3.76968   CCTGTTTATGGTGCT       CAAAAACCCCGGA CGTG TCCGGGGTTTTTG        TTTGCTGGCTACATT 100 53
 CLH39_04050  907703 ..  907717 +  -2.8  -2.63348   AATCACGTTGCAATT               TTGCCT TAA AGGGAA               CTTGGTCTTGGTGAA  40 17
 CLH39_04055  908504 ..  908526 +  -3.5  -2.96249   CTTACCCGCGGGTGG           TCATGTG CAAGGCGAT CACATGA           TAATTATTCATGCCG  45 45
 CLH39_04060  908994 ..  909024 + -16.2  -3.54755   GGTTGATACAAAACA       CACCCCAGACTCTG ATC CAGAGCTTGGGGTG       TCTTGTTTACGGGGT 100 86
 CLH39_04075  913237 ..  913255 +    -3  -2.87274   CAAGCGCAAGTTTGC             GCGAGTCA CTT TGACCGGC             TGATTGATTGTGGAG  42 4
 CLH39_04080  914005 ..  914029 + -10.8  -3.55622   TTTTTGGGGTTTCTG         CCACCAGAGAC GTTT GTCTC-GGTGG          TTTGACGCGCTTCCG  77 117
        glyA  915356 ..  915377 +  -7.1  -3.09505   CAAGTAATCCAGCCG           GAGCGGGCC GTGA GGCCCGCGA            TCTTGAATGAAGTGT  56 34
 CLH39_04090 NONE
        ribD  916975 ..  917000 +  -4.1  -3.56262   CGAGCGGTGGGTGGA         GCTTAT-CCG CCGGACT CGGAATAAGC         TGTTTGTACGCTTTA  52 2
 CLH39_04100  917240 ..  917265 + -16.9   -5.4833   CGCCAGAATTCAAAA         GCCCTCGCACA GCAA TGTGCGGGGGC          TTTTTTCTTGGCTGC 100 36
 CLH39_04115 NONE
 CLH39_04120 NONE
 CLH39_04125  921809 ..  921841 +  -4.1  -3.53012   CTTTGTCGAACTCGC      CCGTCAGCTCC ACTTTCTGTTC GGCGCTGATGG      TTTGACCAGCCGGAA  51 176
 CLH39_04165  928763 ..  928774 +  -3.6  -4.25104   CAGTCGGCAAATACT                TCCG CACG CGGG                 TTTTGATCCAGAGCC  62 96
 CLH39_04175  930636 ..  930662 +  -3.2  -4.26857   GATTAATAAATTGGT         TTGAATTAAATT CAG AATTTAATTGAG         TATTTTATTTTTAAT  59 101
 CLH39_04180  932249 ..  932284 + -27.8  -3.66356   GGCAAAGGTAAAAAA    CAGCCCCCCGACAGTT GGAT AACTGTCGGGGGGCTG     TTTGCGATTGCGCGT 100 112
 CLH39_04190  938000 ..  938013 +  -5.9  -4.30719   AAAATTTGCCATACC               GGTGC TCCT GCGCC                TTTCTTGTCCACGGA  69 62
 CLH39_04200  940846 ..  940866 + -16.9  -3.80018   AGCAGGTAGTCAGGA            GCACGCAGC CTG GCTGCGTGC            TTGTTGCTATGTGGC 100 40
 CLH39_04205  944418 ..  944438 +  -8.9  -3.21395   CTAGCCCCGTTGGGG            GCCTTCAGG CGG CCTGGCGGC            TGTTCTCGAACCAGT  67 139
 CLH39_04215  946040 ..  946081 + -18.2  -3.17075   CCGCCCGGATGCAAA TTGCCCCCAAAATCTGGA TGCGTC TCCAGTTTTTGGGGGCAG  TTCCATTCAGGAAAG 100 81
 CLH39_04235 NONE
 CLH39_04240 NONE
 CLH39_04245 NONE
 CLH39_04250  954014 ..  954042 + -12.4   -2.8007   GCAGCACGGAGTAAT        CACGCTGGGCGA CTTTT TCGTCCAGCGCG        TGGTTGCTGCCTTCC  70 110
 CLH39_04280  959377 ..  959388 +  -5.8   -3.1364   CCACTGCCTCAGGTC                CTGC TGTC GCAG                 TTGCATCATTAAATG  53 69
 CLH39_04295  962895 ..  962923 +  -9.6  -4.20783   AGTAAGCTTTTGCCA        AGCTTGCTCAGT TCCAC ACTGGGCAAGCA        TTTATTCCATGGGGT  83 36
 CLH39_04315  965463 ..  965478 +  -3.2  -3.63627   TAAAGCTTTTCTTGC              TGCTAC CGCA GTCGCA               TTTGGCATGTACAGC  49 171
 CLH39_04320  965892 ..  965913 + -15.9  -5.93809   GTGGGTAAATTTAAA           CCCTGGACG TAAT CGTCCAGGG            TTTTTTTTGTCGCCG 100 100
 CLH39_04335  969671 ..  969693 + -17.8  -2.78679   GCGTCGTTTATAGTC           CGCCCTTCTG CTA CAGAAGGGCG           CTTTGCATAAACGCC 100 88
 CLH39_04340  970513 ..  970538 + -13.3  -4.46854   TGCAGACAAGCAAAA         GGCCGGTTCTC AATT GAAAACCGGCC          TTTCTTATTAAGTAC 100 98
 CLH39_04350 NONE
 CLH39_04355  975917 ..  975934 +  -9.9  -5.10656   CGCGACCACAGCTTT             TGCCGAA ATAA TTCGGCA              TTTTCTTCTTTTACT 100 524
 CLH39_04410 NONE
 CLH39_04415 NONE
 CLH39_04420 NONE
 CLH39_04425  991734 ..  991755 +  -5.1   -3.3334   AGTGCTGGTCTGCGG           GGAAGCTGT TTGT ATAGCCTCC            TTGTCGAGTGCCATT  53 47
 CLH39_04430  992540 ..  992575 +  -4.2  -3.35012   TTATTTAAGAAAAGA   GC-TGGCCCTGAACTTG TAAAT CAA-T-CAGGGCCATGC   TATAGTTTTTTTCTT  52 41
 CLH39_04435  992815 ..  992854 +  -6.5  -3.36327   TGTGCTACCTATTCC CACGGTGCCTGAACTGGCG AGTA CGC-GGTTCAGAT-CCGTG  TTGTCCATCACGTGC  56 147
 CLH39_04450  996238 ..  996258 + -15.4  -4.78029   AGCTGTCATAGCAAA            GGGCCCGC AGTTA GCGGGCCC            TTTTACTTTTATTGC 100 30
 CLH39_04460 NONE
 CLH39_04465 NONE
 CLH39_04470 NONE
 CLH39_04475 1002887 .. 1002913 +   -15  -3.39892   CTACCTGATTGGTAT         GCGCGAGGGGCC TGA GGCCCCCCGAGC         TTCTCACATGTTTTT  91 11
 CLH39_04485 NONE
 CLH39_04490 1005577 .. 1005594 + -14.1  -2.86164   TGTGATGTTGAGCAG             GGGCCGC CAAG GCGGCCC              TGTCGTGATTAGGCA  82 36
 CLH39_04495 NONE
 CLH39_04500 1007478 .. 1007507 + -13.5  -5.93252   GGCTATCGGACCTGT       GCCCCTGGAAGCC GTAT GGCTCTCGGGGGC        TTTTTTATTTTTGGC 100 191
 CLH39_04525 NONE
 CLH39_04530 NONE
 CLH39_04535 NONE
 CLH39_04540 NONE
 CLH39_04545 NONE
 CLH39_04550 NONE
 CLH39_04555 1020597 .. 1020609 +  -6.3  -3.74251   GCAGAAAATCTGGGG                GATTG ATG CAATC                TTTACTCAAACTATC  62 59
 CLH39_04560 NONE
 CLH39_04565 NONE
 CLH39_04570 1023998 .. 1024017 +  -9.3  -5.71712   CGCACTAAGATAAGA            GAACGGG CGGCGA CCCGTTC             TTTTTTTGTCTCCGG 100 78
 CLH39_04575 1025972 .. 1025987 +  -4.6  -4.84146   AACTGCGTACCAGGC              CGGGCA AGGG TGCCAG               TTTATTTTCTGTAAT  76 379
 CLH39_04585 1028336 .. 1028369 + -15.5  -4.84492   GTAGCGGATCTGAAA     TGCCCCTAAGGAGTCA GCT TGA-TCCTTGGGGGCA     TTTTCTTGTCGTTAC 100 57
 CLH39_04595 1033037 .. 1033066 +  -5.1  -2.91276   AGGTGTACACTTTTT       CCATAAAGTCCTA AAAA TAGAACTTTATGA        CTTTATAGGGAAGGC  49 115
 CLH39_04600 NONE
 CLH39_04605 1035217 .. 1035233 + -13.7  -3.23452   TTGGCGGGTCTCTTG              CCCACGC TGC GCGTGGG              TTCCCTTGTCAGAGT  83 227
 CLH39_04620 1039919 .. 1039929 +    -4  -2.64616   AAGAACTGACAGCTT                 GTTT TTC AAAC                 TCATGTAACTAAAAA  43 74
 CLH39_04625 1041119 .. 1041161 + -26.5  -3.04501   CCGGGTGAAGCACAA GGAAACGGGGCCTGGAGCG TGTGC CGCTCCAGGCCTCGTTTTC TATTGACGGCTTAGT 100 46
 CLH39_04635 1044371 .. 1044385 +  -7.1  -3.54543   TTCACGAGACTCGCA               GTGGC TGATT GCCAC               TTTGGCGCGGTGACT  62 18
 CLH39_04640 1046040 .. 1046063 + -10.2  -2.57132   CAGTATTTCGTAGAT          CGGCGCACCG TCTC TGGTGCGCCA           CTTCTGACGCGAGGC  68 52
 CLH39_04645 NONE
 CLH39_04650 1048734 .. 1048748 +  -2.7  -2.83899   TTCGAGAACAAGGAG               CCAGC ATGAC GCAGG               ATTTAGTAGCCGGTT  41 17
 CLH39_04655 1049522 .. 1049533 +  -3.6  -3.01712   CTGTCCGTCTAACTT                TGGG CCTC CCCG                 TATTGGAGGCCAGAC  45 29
 CLH39_04660 1050217 .. 1050252 + -12.1  -4.06055   ATGTTAACCATAAAA   CAAAGGCGGC--CAAGT GAAA ACTTGCAGCCGCCTTTG    TTTCGTTTGCCACGT  90 127
 CLH39_04675 1056289 .. 1056309 +  -5.3  -2.78679   GCAGCAGTTTTCATG            GGTCGGGCT TAG GGCCTGACG            GTTTCAATCCAAGGA  48 44
 CLH39_04680 1057197 .. 1057217 +    -4  -4.07568   CGTCGTGATGCAAAG           GTTCCG-CG TCAG TGTCGGAAC            TTTTCACAAGGAGAG  59 66
 CLH39_04685 NONE
 CLH39_04690 1058947 .. 1058975 + -13.2  -5.38249   GGCTGTCGGACCTGT       GCCCCTGGGAGTC GAAC GACTCTC-GGGGC        TTTTTTATAGTTGCT 100 72
 CLH39_04710 1064707 .. 1064719 +  -3.3   -3.6502   ATCTGTTTGCCATTA                GGCAG TTG CTGCG                TTTCCGTACGCGCTA  52 152
 CLH39_04725 1067040 .. 1067070 + -18.4   -4.7629   CCAAGAATGAAAAAA       GCCTGGAGTCGGTG CAA TACCGATTCCAGGC       TTTTTGGCTTGATGC 100 83
 CLH39_04735 NONE
 CLH39_04740 1071813 .. 1071831 + -12.4  -5.89921   ATCCCTATAGAACAA             GCCCTGCT CAT GGCAGGGC             TTTTTTTATTCTGCT 100 56
 CLH39_04760 1074916 .. 1074941 + -15.5  -5.84381   TGGCTGTCAAAAAAG         CGGCGATGTCT TTAC AGGCATCGCCG          TTTTTTTATTCCTGA 100 50
        ribB NONE
 CLH39_04780 NONE
 CLH39_04785 NONE
        thiL 1080773 .. 1080787 +  -2.1  -3.82031   TTTGGTGGCTGAGTC               TGTGT CATGA GCACA               TTTCCTGATCCTTCC  53 29
 CLH39_04795 NONE
 CLH39_04800 1081867 .. 1081877 +  -6.8  -4.87592   GTTCGGGCAGGCAGC                 GCTG GAT CAGC                 TTTTCTTCTGTATCC  87 89
 CLH39_04810 NONE
 CLH39_04815 1085265 .. 1085302 + -22.3  -4.42974   CTTAATAAATAAGAA   GCCCCACTCACTTTGGAT TGA ATCCAA-GTGAGTGGGGC   TTTCTTGTATCTACA 100 267
 CLH39_04840 1089896 .. 1089908 +  -6.9  -3.51976   GGCCGTTGCGGCGCT                GGCTC GAC GGGCC                TTAGTTTGAGGGGTT  62 4
 CLH39_04870 1096054 .. 1096069 +  -3.3  -3.06515   GGCCGATACCGGCCA              GTAAG AGACTG CTTAC               GTTTTGCCGCTAGAC  44 22
 CLH39_04875 1096664 .. 1096689 +  -8.4   -5.9663   CCACGGAAATAAAAA         TCCGGTTT-GC ATTTG GCTAAACCGGA         TTTTTTTTAATATTT 100 103
 CLH39_04880 1097824 .. 1097845 +  -4.3  -2.68015   AAGTTGCTGTGGAGG           CTGCGCACT AATG AGCGAGCAG            ATTCTGGTCATTAAC  44 15
 CLH39_04885 1099054 .. 1099076 + -10.6  -3.21747   AGGTGGTTTTTTGAA           CCAGACCG GCAGCCA CGGTCTGG           TTCGTGCTGGGGTCG  73 58
 CLH39_04905 1104759 .. 1104775 +  -5.9   -2.5619   GCGCGATAGCTAATA              GCAATGA ACG TTATTGC              ATTAATCAATTTTAC  50 122
        ahpC NONE
 CLH39_04915 1107160 .. 1107183 + -12.4  -6.02914   CCTGGCTGTTCAAGA          GGGCCACCCT GTTT GGGGTGGCTC           TTTTTTTTGTCTGAG 100 59
 CLH39_04925 1111140 .. 1111170 + -10.4  -5.42259   ACAAATTGACCTGAT       CGCCCCTGGCAT TCCACCC GTGCCAGGGGCA       TTTTTTTAGCGCTAA 100 92
 CLH39_04930 1111862 .. 1111890 +  -4.7  -3.06662   AGCGACTAAGCCAGT       TGCT-TCAGAGC GCAGCA GTTCTGACAGCA        CTTATTTATCAGTTT  48 32
 CLH39_04935 1112918 .. 1112959 +   -21  -3.32769   TAAATCCTGGTTTCA GG-CTGCGGCCCGGCTCAG CTTGC CTGAGTCGGGCCGCAGGTC TTGCTGGTTTGCGCA 100 38
 CLH39_04940 1113258 .. 1113291 + -12.5  -4.76171   TCCTTCCTTTTTGCA     CGTCTGAGCAGGC-CA TGA TGCGCTTGCTCGGGCG     TTTTATACTTTTTTG 100 52
 CLH39_04945 NONE
 CLH39_04950 NONE
 CLH39_04955 NONE
 CLH39_04960 1117998 .. 1118034 + -29.7  -3.35798   CAGTCTGTAGATAAA    CAAAGCCCCGTGTCGGA CTC TCCGACACGGGGCTTTG    TTATAAGTGGCCCGT 100 50
 CLH39_04975 1120719 .. 1120739 +   -14  -4.28432   GATAGAGACCGGGAG            CTGGCCGC TGCAT GCGGCCAG            TTTTGCATTGGGCTT 100 57
 CLH39_05025 NONE
 CLH39_05030 1130236 .. 1130248 +  -4.7  -2.83403   GCTGGAAGTGCTTGA                GGCGG AAT CCGGC                GTTTCATGACGGCCC  45 4
 CLH39_05035 1131840 .. 1131855 +  -4.6   -3.0263   ATATCCCAATCGCGA              TGGCCC TGCT GGGCAA               TCTTCGCAAACTGCT  47 88
 CLH39_05045 1133993 .. 1134022 +  -6.3  -5.06414   AACGACAGGTTCGTC       TAGAACGGGGCGC CTTG GCGCCTCGCCTTA        TTTTTATTGAAAACA  86 54
 CLH39_05050 NONE
 CLH39_05055 1136843 .. 1136883 + -15.6  -4.72272   GTAAGTTGGACTGAT C-TCAAGGGCCTGAATTCC GCAA GGGATTCAGGCCCTTGTTG  TTTTTGCTGAGAGCA 100 37
 CLH39_05060 1138108 .. 1138139 + -17.5  -3.97307   GCTGACAAAGAAAAA      GGCCTGATTTCGT GGAGAG ACGAAATCAGGCC       TTCTTGTTGACTGCG 100 113
 CLH39_05075 NONE
 CLH39_05080 1141279 .. 1141291 +  -2.6  -2.78216   AAGCAGTCCCTTGTT                GTCC CTCGC GGGC                TGCTTCATCCCAGTA  39 52
        ssrS 1141499 .. 1141520 + -15.9  -5.86976   GCACCTACAAAAAAA           GCCCGTCCA GATC TGGACGGGC            TTTTTTCTTTTCTGC 100 35
 CLH39_05095 NONE
        msrA 1143684 .. 1143697 +  -3.8   -4.3739   GAGTCGAGTCAGCAA               TCGG GTGAAG CCGA                TTTTCTCCAGGACTG  65 388
 CLH39_05120 1148237 .. 1148251 +  -4.4   -3.0438   AAACTGAAGTTAAGC               TAAAAA TTA TTTTTA               TAGTTATTCTTCATA  48 151
 CLH39_05125 NONE
 CLH39_05130 NONE
 CLH39_05135 1150927 .. 1150968 +  -6.7  -3.28712   TGACCTGGCGCTAGA TTCAACGAAGAGTGTTCTT TTTC AAGAATACTGCTCGTTGGG  TTATGCAACCCACGA  58 110
 CLH39_05140 1154194 .. 1154228 +  -9.4  -2.94759   TGACACCTTCGTAAC    CGCTGCTAGCTGATC CGTACT GATC-GCTAGCGGTG     TGCTTCTTCCAATTG  63 97
         rrf 1154408 .. 1154442 + -23.1  -4.07568   CAAGCTCTTATTCCT     CAAAACCCCCGCAAG CATCC CTTGCGGGGGTTTTG     TTTTAGGCGGCGACA 100 36
 CLH39_05150 1154938 .. 1154962 + -15.8  -3.37056   CATGACTGGATCATA          GAAGCGGCGT CTCAC ACGCCGCTTC          TTCTGCCTGGATGGT 100 69
 CLH39_05155 1155489 .. 1155506 + -11.3  -5.69793   AAGAAATATTTAAAA             GGTGCTC AGAT GAGCACC              TTTTTTATTTGATGT 100 79
 CLH39_05175 1159446 .. 1159482 + -10.3  -2.64933   AGGATGACAGAGGCC   GCCTGGCTCCAGCGTCT TTACT AG-CGCTG-AGTCAGGC   TGCTCTGGATACCTG  68 40
 CLH39_05180 1160497 .. 1160510 +  -8.1  -2.78384   GTTCTTCACCAATGG               CAGCC GCCA GGCTG                TCTACTCCAACCGGG  54 203
 CLH39_05190 1162788 .. 1162815 + -22.8  -4.87665   CGCGAACAGAAAAAA        GCCGGGCCGTTC ATAT GAACGGCCCGGC         TTTTTATACATAGCA 100 258
 CLH39_05225 1168927 .. 1168953 +   -13  -2.87344   TTCCTTCACAGCTTG         CCGCGTCCTGGA AGT TTCAGGGCGTGG         TGTCTCAGGCGGCTG  78 225
 CLH39_05230 1169427 .. 1169437 +  -3.2  -2.93901   TGGATTTGTTGCGGA                 TGGC GCT GCTA                 TGTCCTTGCTCGACT  42 49
 CLH39_05235 1170275 .. 1170286 +  -2.2  -2.84587   GGACAAGCGCTATGA                TGGT CAGG GCCA                 ATTGATTTTGTCGGG  39 9
 CLH39_05240 1172202 .. 1172216 +  -5.6  -4.08767   GAGCCTTGTCCTGCA               GCTTGC TGC GCATGC               TTTTCAGAAAATAGG  64 425
 CLH39_05255 NONE
 CLH39_05260 1174624 .. 1174647 +  -5.2  -2.63476   ATAGGATTGTTACAA          ATGCTTGCCA CTGG TGGCAAGCCG           ACTTTTTGCGTACAT  47 102
 CLH39_05265 1176127 .. 1176149 + -13.5  -4.50058   CGATATGAGGCAGCA           TGGGACCGT AGAAA ACGGTCCCA           TTTTCGTTCTGGATC 100 118
 CLH39_05275 NONE
 CLH39_05280 1178116 .. 1178130 +  -3.6  -4.25681   CCAAGCGCGCGACCA               TTTCAT ATT ATGGAA               TTTGTTGCGTTGCAT  61 47
 CLH39_05285 1179017 .. 1179035 + -10.4   -3.2285   CAAGTCCATGACGGT             TTTGTTGC AGC GCAACAAA             TTACGTTGACTTTGT  73 77
 CLH39_05295 1179849 .. 1179867 + -14.6   -5.5604   GGCGCTAAAGAAAAA             GCCAGCTC ATC GAGCTGGC             TTTTTTCTTGCTTGC 100 65
        aspA 1186706 .. 1186722 + -12.3  -5.24531   GTAACAGTTTGGGAA              GCCTCCA TTG TGGAGGC              TTTTTTCTGCCCGCT 100 85
 CLH39_05335 1187764 .. 1187777 +  -8.1  -2.72881   GAGCCCAAGTTTCAA               GGCGT TTTT ACGCC                ATCTTTGATTACCTG  59 246
        hppD 1188930 .. 1188962 + -17.1  -5.44119   ACGGGTGCTGATCTG      TCCCCACTGTTTGGC GAT GGCAAGCAGTGGGGA      TTTTTTTGGGCTGAA 100 67
        gspG NONE
        gspH 1191681 .. 1191701 +    -4  -2.95093   CGTTTTGATGTGCAG            TCATGACA GAGCG TGGCATGA            GTTTGATTGAAGTAT  45 20
        gspI NONE
 CLH39_05370 NONE
 CLH39_05375 NONE
 CLH39_05380 NONE
 CLH39_05385 NONE
 CLH39_05390 NONE
        gspD NONE
        gspE 1199474 .. 1199490 + -10.1  -2.57132   ACCCCTGAAGAAGTA              TTGCGCG TCA CGCGCGA              GTTATAAGGGGGCGA  65 2
        gspF 1200815 .. 1200846 +  -7.2  -2.82834   CACTTGCGTTGAGCC      CGCTATGTCGAGGC CATG GCCTTGATGCGGCG       TATCGTCCTGGGATG  56 126
 CLH39_05415 NONE
 CLH39_05420 1211164 .. 1211209 +  -6.7  -4.09739   TGGTAAGTCGGCCCT GACTCTATGGTGCATCGGCGC ATTG GCGCCGATGCACAGCACACAC TTTTGAAGGAATTCA  69 35
 CLH39_05425 1212028 .. 1212042 +    -7  -2.90212   GCAACCAGGCACACA               CCCGTC TTG GCCGGG               TGTGTGCCGTGATCG  54 51
 CLH39_05430 1212620 .. 1212637 +  -3.3  -3.10531   TGGTCGGTGATAACA             GGACTGCG TAT CGC-GCCC             TATGTATGATTTTGA  44 31
 CLH39_05435 1213116 .. 1213134 +  -8.8  -3.61371   CGCTTTTCCCGCTAA             GCTTGCTG GAT CAGCGGGC             TTTCAGATCCCGTTT  70 26
 CLH39_05465 1222214 .. 1222234 +  -3.1  -3.05384   TACCACGGGGTCACG            GGTGATCAG TTC CAGAGCGCC            TTGCGTAAAGCGCGC  43 139
 CLH39_05480 NONE
 CLH39_05485 NONE
 CLH39_05490 1227286 .. 1227322 +  -2.4  -6.25578   CCCCCGGCTTTTGAA   CCGATATCTC--GCCC GACCCCA GGGTTGGAGATGTCGG   TTTTTTTTGTTTAGT 100 114
 CLH39_05505 NONE
 CLH39_05510 1232269 .. 1232290 + -10.9  -3.63922   GGCAAAAAGGTTCGT           CCTTGCTGG GGAA CTAGCAAGG            TGTTTTGGCCAGGCT  77 9
 CLH39_05515 1233380 .. 1233393 +  -8.1  -3.14931   GGGTACAGCTCGGCG               GTGGC GGCG GCCAC                TTCGTGCGAGCTGGC  57 521
        soxR 1239276 .. 1239292 +  -7.2  -2.52896   GCTCGGGTCGGGCGA              CTGCGC GTACA GCGCGG              TGGCTTCGGAAGTGA  55 40
 CLH39_05570 1247013 .. 1247030 +  -3.4  -5.06816   CAGGGAGGCATAGCC             CAGCAG CCAGCC CTGTTG              TTTTTCTTCACCAAT  78 118
 CLH39_05580 1249628 .. 1249658 + -12.5  -2.71712   GTTCATGCGCGAGTT       CAAGCGCACGCAC GGTTA GGGCGTGCGCCTG       CTTTGCAAGGCGGCC  77 7
        glyA 1251033 .. 1251054 + -12.3  -6.50115   ATTTTTTTATAAGGG           CCCAGCCAC TTTG GTGGTTGGG            TTTTTTTTTTATGAT 100 49
 CLH39_05590 1252166 .. 1252177 +  -5.8  -3.55444   GGCAGTCCGGGTAGC                CCGA ATAA TCGG                 TTTCGGACATACCGC  55 329
 CLH39_05610 1256445 .. 1256477 +  -8.4  -2.96152   TGTCGCTCTGTTTGA      TGTCGGCGATAGGT GCAAA GCCCATCGCTGACG      TGCTGTTTTGCCTTG  60 77
 CLH39_05615 NONE
 CLH39_05620 NONE
 CLH39_05625 1262144 .. 1262177 +  -5.3  -2.78384   CGGGGCAGTTCACCT     TTGTGCTGAACATTC CACC GAACTTTCAGCGCGA      TGTGCTGGCCGGACG  48 316
 CLH39_05635 NONE
 CLH39_05640 1264265 .. 1264278 +  -3.8  -3.29144   TGTATGGGCCCGCTT               GTCG GGCCTG CGAC                TTATGAAAGGAATGG  48 65
 CLH39_05645 NONE
 CLH39_05650 NONE
 CLH39_05655 1269112 .. 1269132 + -11.1  -4.15235   GCCAGCGAAAATCCG            GGCCCCACT TTT ACTGGGGCC            TATTTTTTAGGAGTT  91 94
 CLH39_05660 1269916 .. 1269946 +  -7.6   -2.7535   GTTAAGCGACAGGTT       TGGCGGCTCT TTTTTTGTGTT GGAGCCGCCA       TCCTGTGTTGGAAAA  56 36
 CLH39_05680 1275068 .. 1275099 + -16.8  -3.25823   GAAATACATAAAGAA      CAAGCCAGAATCCCA AAC TGGG-TTCTGGCTTG      TTGGTGTAAAAAAAC 100 310
 CLH39_05695 1278385 .. 1278397 +  -7.7  -2.89421   GTTATCGATTCTGGC                CTGGA AAT TCCAG                TCTGCTCATTGTTAG  57 145
 CLH39_05700 1279524 .. 1279536 +  -3.4  -4.58663   GCACGTTCAGTTTGC                GCAT GGCCG ATGC                TTTTTGGGCGCTGAT  69 126
 CLH39_05735 1291915 .. 1291934 +   -15  -5.99154   CGCAGGAAGAAAAAA            GCGGAGCC CCTT GGCTCCGC             TTTTTTTATTTGCTG 100 43
 CLH39_05800 1304650 .. 1304689 +  -3.5  -4.58395   GAAACTGGCTCCCAG  CAAAATCGCCTGTATGT AGTTGC ACATACAGGCGAGGGCG   TTTTTCAAAACTACG  66 7
        gabD 1309804 .. 1309817 +  -3.1  -3.48276   CGCGCCCAGCGCAGC               GAG-GG GGG CCGCTC               TTATATAGAGCACCC  47 54
 CLH39_05825 1311212 .. 1311244 +   -15  -4.56597   CGCTGCCCTGACAAT      CCGGGCATGCAAGA CCGTT TTTTGCATGTCCGG      TTTTTACCGCCGGGC 100 65
 CLH39_05830 NONE
 CLH39_05835 NONE
 CLH39_05840 NONE
 CLH39_05845 NONE
 CLH39_05850 1315897 .. 1315926 +  -9.3  -5.81412   AGCGGAAACCTTTTT       GCCTGAGTCTGGTG CTG TGCCGG-CTCAGGC       TTTTTTTTGCCTGCG 100 53
 CLH39_05855 NONE
 CLH39_05860 1317580 .. 1317595 +  -5.4  -3.48276   TTTCAGACCTAACGT              CTGCTT ACAA GAGCAG               TTCTGTCCGGGACAG  54 51
 CLH39_05865 1319949 .. 1319970 +  -2.9   -4.1523   ATAGGCTCGCGTTCT           TCCACGGCA GGCT TGATGTGGG            TTTCTATATAGTCCA  60 474
 CLH39_05895 1327547 .. 1327563 +    -5  -3.35185   TCATGCTGAAAGACC              CTGCCC CTTGT GGGCCG              CTTCTTTTTGTATGT  54 104
 CLH39_05900 1328776 .. 1328801 +  -2.5  -3.38224   GCAAAAGCGTGCAGA         TCGGGCCGTGTC ATA GGCA-GGACTGA         TGTTTGGCATAGCGT  46 10
 CLH39_05905 1331133 .. 1331157 + -14.3   -5.4505   GAGCCTGATGCAAAA          GCCTGCTTGCC ATC GCCAAGCAGGC          TTTTTTATTGGAAGC 100 62
 CLH39_05915 1332464 .. 1332480 + -10.1  -5.47821   GCCCAAGACAAGCGG              CGGCTGA TTG TCGGCCG              TTTTTTTAAATAAAT 100 19
 CLH39_05920 NONE
 CLH39_05925 1334471 .. 1334509 + -13.9  -3.17571   TGGAAAGCCTTTGTG   CAAGCGCAGTTTTAGCC GTTCA GGCCAAGACTGCGCGTG   TTGGATTCAAGCCTT  81 93
 CLH39_05930 NONE
 CLH39_05935 1337014 .. 1337038 +  -4.9  -3.19835   AGATCATCAAACCCA          GCAAACGCAGT GTC ATTGCGATGGC          CTTTGTATTGTTGGG  50 171
 CLH39_05940 1338053 .. 1338071 +  -3.1  -2.87211   TGATCAAACAAAACA             GGAGCAT GAACA ATGATCC             TGTCTGCAAGAACGT  42 10
 CLH39_05945 1339559 .. 1339569 +  -4.6  -2.78935   CCGAATTTCCAGAAT                 TGCC TCG GGCG                 TCTCCTGCACACTGT  44 113
 CLH39_05970 1343967 .. 1343993 +  -8.6   -3.1364   CTGATCAAAGACACA         GCGCAGTTGGAA GCA TTCCCGCAGCGC         TTCCGTGGTTGCCTC  60 427
 CLH39_05980 1345720 .. 1345748 + -14.6  -5.45652   TTCATGAGCTTAAAA        CCCGTGTCAGCC AAATC GGCTGAAACGGG        TTTTTTATTGAGCCT 100 50
 CLH39_06000 1350164 .. 1350190 +  -5.1  -4.61482   AGGGCCTTAGCTGGC        CAGG-CCACGCT CCAG GGCGTGGGCCTC         TTCTTTTTTCAAGGC  73 49
 CLH39_06020 1353458 .. 1353482 + -12.2  -3.79481   TTGGATACAAAAAAA         CCACCAGCTGC TTCG GC-GCTGGTGG          TTTAGCTTGCGTTTC  85 153
 CLH39_06035 1357209 .. 1357219 +  -2.4  -2.75074   GCCAGTTAAGGGATG                 GACC TTC GGCC                 TGCTGTTGGGCTGAG  39 32
 CLH39_06040 1358409 .. 1358426 + -12.7  -4.85599   AGGCGGGTCTTGAAC             TGGGGGC AGAT GCCCCCA              TTTTTATGCGATCAA 100 83
 CLH39_06045 1359198 .. 1359208 +    -4  -2.74461   CCATATGCATTTCAT                 CAAA TAA TTTG                 CTTTCGCAATCAATC  44 165
 CLH39_06050 1361195 .. 1361229 + -16.5  -2.96444   GAATAAGGTTCCCTG     GCCCGATCTTTGGCG GCATA CGCTGGAGATCGGGC     ATTATTATTCAAACA  95 51
        dnaJ 1362452 .. 1362473 + -15.9  -5.03715   AGTAGAAAGTAAAAA           GCCCGGTAC TTTT GTACCGGGC            TTTTTTACGCCTGCT 100 72
 CLH39_06095 1374258 .. 1374272 +  -3.6  -5.42265   AGCTCCGGAAAATCC               CTAATG CCT TATTAG               TTTTTTATGGTTTGG  85 188
 CLH39_06105 1375174 .. 1375203 +  -2.7  -4.16182   GTGAAGTGGGCACAG       CGGGAGACACG CCATGACA CGTGCCGCCTG        TTTCCTTTCTGCTGC  59 9
 CLH39_06110 NONE
        cpaB 1376618 .. 1376639 +  -2.3  -2.87146   GCCGTTTAGAGGTCA           TTCAGTATT AAGC AATACAGAG            CTTGTTGTGGGGACG  41 15
 CLH39_06120 NONE
 CLH39_06125 NONE
 CLH39_06130 NONE
 CLH39_06135 NONE
 CLH39_06140 NONE
 CLH39_06145 1383609 .. 1383628 +  -2.1  -5.02476   TGGGCCCTGTGTCTT            CGTCAAT GAATTG ATTGCCG             TTTTTTCAAGGATAT  70 12
 CLH39_06150 NONE
 CLH39_06155 NONE
 CLH39_06160 1387764 .. 1387776 +  -5.5  -4.49377   GACGGCGGTGTTGCT                GTCCT TGG GGGAC                TTCTTTTCTTGTCAG  71 122
 CLH39_06165 1388471 .. 1388496 + -13.3   -5.1861   AAGCCTGATTGAAAG         CCCGCACAGTC GCAA GACTCTGCGGG          TTTTTTAATCGTAAA 100 55
 CLH39_06185 NONE
 CLH39_06190 1392524 .. 1392552 +  -9.6  -2.82742   CCACCGCCATGGTTT        CCAGAGCGGTCA GCAGA TGACCACTTTGG        TGCTTGTCCCAAGCT  61 381
 CLH39_06200 1394166 .. 1394205 +   -18  -2.82516   AAAGCCGGTTTTCTA  CATGAGAAACCGCCGACC TTCG GGTCGGCGGTTTTTTTTG   TCTCATGCTGGCGCA 100 56
 CLH39_06205 NONE
 CLH39_06210 1397037 .. 1397076 + -13.6  -3.03124   GGAGCAGGTTTACTC  CGTGCCGCGAGCC-TTCCA GTT TGGAATGGCCTGCTGCACG  TGTTGCGAGCTCAAG  81 46
 CLH39_06225 NONE
 CLH39_06230 1400569 .. 1400601 + -20.6  -5.28315   CGACTGATGTGTATA      GGCGCTGCCCGGCT GAAAG AGCCGCGCAGCGCC      TTTTTTGAATTTTCT 100 34
 CLH39_06235 1401723 .. 1401740 +  -8.3  -3.93782   GGGCCTACAGAGCCC             GGCCGGC TGAG GCCGCCC              TTTGATATTCCGTGG  72 73
 CLH39_06240 1402420 .. 1402437 + -12.7  -5.14477   CAACAACAAAAAAAA             GGCCAGC GAAA GCTGGCC              TTTTTTACGTCTGTA 100 228
 CLH39_06255 NONE
 CLH39_06260 1407290 .. 1407308 +  -8.1  -3.15366   AGTTTTCAATACAGA             CCTGGTC CGCTT GGCCAGG             TCTTGCCATTTTAGG  62 103
 CLH39_06265 1408711 .. 1408724 +  -5.2  -3.45033   ACCTCAGTACTGCTT               GCGC TGTGCT GCGC                TTGTGGTGGCTTGTG  54 86
 CLH39_06270 1410161 .. 1410189 + -14.6  -4.90869   GTCCGAATGGAAAAA        GGGCTGATGACC TGTGT GGTCCTCAGCCC        TTTTTCATTCATGGT 100 48
 CLH39_06285 1411519 .. 1411538 + -12.2  -5.86976   CCTGGAATTTTGAAA            GCCCTTGA TTAT TCAAGGGC             TTTTTTGTTTTCTGC 100 41
 CLH39_06290 1412674 .. 1412700 + -18.2  -3.53012   GTGTTTTGTAGATGG         CAGATAAAGGGC ATG GCCCTTTATCTG         TTTGGAAAGAAAGGA 100 54
 CLH39_06295 1413588 .. 1413614 +  -8.8  -5.65496   AGGTAAAAAAGGAAA        GGCAAGGC-CA TGTATT TGCGCCTTGCC         TTTTTATTTTTGGTC 100 103
        ilvB NONE
 CLH39_06310 1418774 .. 1418797 + -13.2  -3.30124   ACCGCTTTTATTCAA          GGAGCTGCTT TTCA AGGCAGCTCC           TTATAAAGGGTAAAC  83 66
 CLH39_06315 1420014 .. 1420041 + -19.2  -6.13503   GGTCTTGAGCCTGAA        CCGGCTGACGTC TTGC GGCGTCAGCCGG         TTTTTTTTATTGCTG 100 74
        pssA 1421211 .. 1421247 +  -7.9  -3.09823   TTTCGTTATAATCGT    TTGCTTGCACTTGGCCT GAT GGGCCCGGTGCACTCAA    TCTCATTTTCAACAC  59 95
 CLH39_06325 1421605 .. 1421641 + -15.2  -5.88565   CTCCCCGCTAAACAA    CCGTGCATTCGGCGAA CTGGT TTCGCTGTGTGCACGG    TTTTTTTATTGTAAG 100 53
         pnp 1423834 .. 1423849 +  -8.2  -5.22039   CTGCTTGAAGAAAAA              CCCGCT GCAA GGCGGG               TTTTTTGCGTTTGGC 100 54
 CLH39_06335 1426018 .. 1426037 + -12.2  -4.86001   TGGTGAAACAAAAAA            GCCCACTA TGCG TAGTGGGC             TTTTTGTCGCCTGGT 100 145
 CLH39_06350 1427530 .. 1427546 + -13.7  -5.10208   CCATAAAAGCAGCAA              GGGTGGC ATA GCCACCC              TTTTTCTTGCCGTTC 100 35
 CLH39_06355 NONE
 CLH39_06360 1428927 .. 1428954 + -17.1   -3.2789   CGGAAAATACGATAT        CAAAGCCCGCC TCTAAT GGCGGGCTTTG         TCTATTTGGCGTTGT 100 107
 CLH39_06365 1429210 .. 1429224 +  -5.6  -6.34424   GAAATAAAACCTGAT               CCTGGC AAG GGCAGG               TTTTTTTTTTGCCAA 100 79
 CLH39_06370 1431029 .. 1431046 + -11.3  -5.52023   GAAGAAGTATAAAAA             GCCATCC TTCG GGATGGC              TTTTTTATTGCTCGT 100 100
 CLH39_06375 1431934 .. 1431945 +  -3.6  -4.17657   CCCATCCATAGAGAA                CCCT GCTA GGGG                 TTTTCGCGTCTGCTG  61 42
 CLH39_06380 NONE
 CLH39_06385 NONE
 CLH39_06390 NONE
 CLH39_06395 NONE
 CLH39_06400 NONE
 CLH39_06405 NONE
 CLH39_06410 NONE
 CLH39_06415 NONE
 CLH39_06420 NONE
 CLH39_06425 NONE
 CLH39_06430 NONE
 CLH39_06435 NONE
 CLH39_06440 NONE
 CLH39_06445 1446799 .. 1446816 + -11.3   -5.9873   AATGCATGAAAAAAA             CCTCGCA ATTT TGCGAGG              TTTTTTTTGTCCTGA 100 46
        serB 1449195 .. 1449218 +   -11  -5.39721   CTGTCAAAAATAAAA          GAGCGTTGTC CTTG GGCAGCGCTC           TTTTTTATATCCTAG 100 171
 CLH39_06465 NONE
 CLH39_06470 1454225 .. 1454240 +  -4.6  -4.65895   AGAAGGGGCGCAGCA              GGCGCT GGAT ATCGCC               TTTTTCAATACCGGC  72 309
 CLH39_06485 NONE
 CLH39_06490 1458668 .. 1458719 + -10.2  -4.59109   GTCAAACGTCATCAT GGAAAAACACCCCAAAGATTGGAT TCAA GTCCAACTTTTGGGGTGTAGTGCC TTTTTCGGGGCTGTC  91 81
         smc NONE
 CLH39_06505 NONE
        ligA 1467331 .. 1467355 + -12.9  -5.13722   ATTTTTCGACTTTTA          GGCAGTGCG CTAAGCA CGCACTGCC          TTTTGTTTTAATGCG 100 132
 CLH39_06535 1471067 .. 1471082 + -10.4  -5.00616   TCTGACAGGCAAAAA              CCGGCT CAAG AGCCGG               TTTTTTCCAAGGCGG 100 43
 CLH39_06540 NONE
 CLH39_06545 NONE
 CLH39_06550 1474851 .. 1474884 +  -8.2  -3.28001   AGCTTAGAAGCGGTA    GC-CGACCCCGATGGT GGCA ACCA-CGGGGTCCAGC     TTGGCTTTGCCAATG  64 34
        pncB 1481426 .. 1481447 + -10.9  -4.72272   AAAGTTTGAATCAAA           GCCTTTTGC ACAC GCAAAGGGC            TTTTTCATAGACACA 100 181
 CLH39_06595 1484375 .. 1484395 + -14.7  -4.03888   CGGTAAACCTAAACC            TCGCGGGCG TTG TGCCCGCGA            TTGTTCTTGTCAATC 100 52
        trpB NONE
 CLH39_06605 1486504 .. 1486528 +  -7.1  -5.42259   CGCGTATAGAATCAT          CTGCCTGTTCT TTA GGAACAGGCGC          TTTTTTTCAGAATAA 100 56
 CLH39_06610 1487495 .. 1487516 + -12.3  -5.78622   ATTGCTAAAGAAGAA           CGCCACCTG GGTT TAGGTGGCG            TTTTTTTTGGGCTGC 100 51
 CLH39_06620 1492728 .. 1492739 +  -2.2  -3.54919   GGCTGCCTGTCAGGC                CGTT CTTG AGCG                 TTTGGAGAAGTAGTT  47 1
 CLH39_06625 NONE
 CLH39_06630 NONE
 CLH39_06635 1495031 .. 1495058 + -12.8  -5.64274   GTGCACTAAGCAAAA        CAGGTAATGAGC ATAA GCCCATTACCTG         TTTTTTTATCAATCC 100 32
 CLH39_06655 1498016 .. 1498029 +  -5.3  -4.25016   CCGTATTGGGCTCGC               TCAAG AAGT CTTGA                TTGTTTGTTACTAAT  66 12
 CLH39_06660 1498303 .. 1498324 +  -8.7  -3.32022   AGTCTCTTTGTCGTT           GCAAGCAAC ATAG GTTGCATGC            TTGATGTCTAACAAA  67 42
 CLH39_06665 NONE
 CLH39_06670 NONE
        fabD NONE
        fabG NONE
 CLH39_06685 1502609 .. 1502622 +  -4.5  -3.53811   GCATTGTGCACGCCC               TCGCT CCAG AGCGG                TTTCCAGAGAGTAGC  54 62
        fabF 1503966 .. 1504017 +  -9.6  -4.62471   ACTGCCCCACTCGTA ACGCCCAGTCCTGGTCG-ATCGGAGC TCCG GCTCCGGTGCG-CC-G-ACTGGGCGC TTTTGTCTGTGCCTT 100 46
 CLH39_06695 1504390 .. 1504401 +    -3  -3.18264   TCAGGTCCGTGCTCA                GAAT AAGG ATTC                 TTAATGAGTGAACGC  44 10
        rpoE NONE
 CLH39_06705 NONE
 CLH39_06710 NONE
 CLH39_06715 1508106 .. 1508124 +   -16  -4.57837   GTAGTCATTGATGAA             CTCCGGCC AGG GGCCGGAG             TTTTTCCGCCGCTAT 100 65
 CLH39_06720 NONE
        lepB NONE
 CLH39_06730 NONE
 CLH39_06735 NONE
        recO NONE
 CLH39_06745 NONE
        rarD 1514943 .. 1514954 +  -2.2  -5.86061   CTTTTGGGAAGGACA                TGAC AGGA GTCG                 TTTTTTTTACTACGG  95 179
        lptF 1520117 .. 1520131 + -12.8  -5.30686   AGCTGAAGTAGAAAA               GGGGCG TGA CGCCCC               TTTTTTGTGCCTGTT 100 35
        mmsA 1522783 .. 1522798 +  -4.6   -3.0814   TTATTACATATAATA              GCCCTG TACC TGGGGC               TATTAACATATGAAT  48 87
 CLH39_06790 1523780 .. 1523817 + -19.3  -3.89346   CCACTGTTTAGTTGG   CAATTAGGGCCATCGTG ATTA CACGGTGGCCCTTATTG    TTTGTGCGGTCGGCG 100 47
 CLH39_06795 1524355 .. 1524376 + -13.1  -5.36441   ACAGATTAAAAAAAA           GCCACTGTT ATGA AACAGTGGC            TTTTTTGTGTGCCGC 100 80
 CLH39_06805 NONE
         acs 1528890 .. 1528914 +  -7.2  -6.02919   GTAGTTCCTGTTTGA         CCCTGGTTTCT TTGC AGAG-CCAGGG          TTTTTTTATTTCTCC 100 49
 CLH39_06815 1529930 .. 1529947 + -12.7  -4.62471   ATAGAGCAAAAAAAA             GCCACCC TGAG GGGTGGC              TTTTTCGACATTAAC 100 37
 CLH39_06825 NONE
 CLH39_06830 NONE
 CLH39_06835 1533770 .. 1533789 +  -7.8  -5.71983   TCTCTGGCTAAAAAA            GCTTCGGC GCGA GTCGGAGC             TTTTTTTATGCTTGA 100 47
 CLH39_06840 1535605 .. 1535631 + -10.8  -2.81045   GTGGCTTGAGCAAAG         GACGCAGGCGAT CTG ATCGCCACCGTC         TGCTCTTGTCAATAG  69 10
        pyrG 1537437 .. 1537453 + -15.1   -4.8622   GGTATGACTGAAAAG              GCCCGCG CTA CGCGGGC              TTTTTCATTCGGGGC 100 47
 CLH39_06850 NONE
 CLH39_06855 1538792 .. 1538806 +  -5.6  -3.05536   GTTAAAAACAGCGGT               GCCTTG CAG CACGGC               TATTAAAAGTAGTTT  51 5
 CLH39_06860 1539151 .. 1539170 + -12.2   -5.2189   GTCAGGCAGGAAAAA            GGGAGTGT GAAA ACACTCCC             TTTTTTGATGCTTGC 100 61
 CLH39_06870 NONE
 CLH39_06875 1542307 .. 1542320 +  -3.8  -4.07568   CGGCTGTGTCATGGG               CAGG TACAAT CCTG                TTTTAGCAGGAGGGC  59 185
 CLH39_06880 1543800 .. 1543823 + -16.8  -3.49475   CTAATTCTGTTTGAT          GAACCGGGTC GGAA GACCCGGTTC           TTATATCGCCATGCG 100 37
 CLH39_06885 1544163 .. 1544185 +  -2.7  -4.03696   GCGCAAGGCGCTGCT          GGAAC-GGCT GATC AGCCAGTTCA           TTTCTGATAATTCTT  56 49
 CLH39_06950 1559280 .. 1559314 + -18.8  -5.03715   GGCGCGGTCTGAAGG     GGCAAATGACAAGGCT TTA GGCCTTGTCATTTGTC     TTTTTTGGGGCTGCT 100 43
 CLH39_06955 1560864 .. 1560922 + -16.8  -4.43844   TCGTGTCGTTGTAGG GCGAGG-CCGGCCTCGGTGACTGCACCC CATGT GGGTGCGGGTACTGAG-CCGTACCTCGC TTTTCTGCCTGGTCC 100 44
 CLH39_06960 NONE
 CLH39_06965 1563175 .. 1563200 +  -8.9   -6.5058   AAGCGATAAAGAAAA         CGGGACCCGTT GAAT AACTGGCCCCG          TTTTTTTTTGTTTGT 100 59
 CLH39_07010 NONE
 CLH39_07015 NONE
        maiA 1574915 .. 1574931 + -13.7  -5.06414   GCCGACCAGACTTCA              CCCGCCT GAC AGGCGGG              TTTTTCTTGCCCCGC 100 70
 CLH39_07025 NONE
 CLH39_07030 1577423 .. 1577443 + -16.9  -5.86061   CTGGTCCAGCGTAAA            GCCCACCGA AAT TCGGTGGGC            TTTTTTTTACTGCCG 100 52
 CLH39_07035 1578001 .. 1578011 +  -6.8  -3.53012   TGTCTTTGGCTTCTT                 CACC CAA GGTG                 TTTACGCCCAGCAGA  60 110
 CLH39_07090 NONE
 CLH39_07095 1587869 .. 1587901 + -14.1  -2.73972   TGAACCGATTTGGAC      TAGCCTGCCGGCACC GTG GAAGCTGGCAGGCTA      ATTGCTGTTTTGTGA  82 44
 CLH39_07100 1589114 .. 1589138 + -11.4  -3.01712   AATCATGATGGCGCC          ACCCAGCAGC GCACG GCTGCTGGGG          TATTGAGCGAAAAGC  68 90
 CLH39_07110 1591237 .. 1591257 + -12.6  -5.27938   TCTACTTATAAAAAA            TGGCCTCC TTAGC GGAGGCCA            TTTTTATTTAGCAGT 100 213
 CLH39_07125 1595859 .. 1595890 + -21.8  -4.99947   GATTTATATCAATAA      GAAAGGGACCGCTT TTTC AAGCGGTCCCTTTC       TTTTGTTTGGTTCCA 100 69
 CLH39_07135 1598284 .. 1598311 +  -7.7  -5.67967   AATAGATAAAAAGAA        CCGCCC-CCCTT AATTC AAGGTTGGGCGG        TTTTTTTATGCTGCT 100 62
 CLH39_07145 1600253 .. 1600264 +  -7.2  -3.32769   GAAGGGGATGTACCC                CCCG AATC CGGG                 TTGGTGGTTTGACGG  61 2
        ectA 1600889 .. 1600905 +  -2.2  -3.48276   CTGATTGTTGTTTGT              CGGC TCAAGACAC GCCG              TTCTATAACCAGGAG  46 84
        ectB NONE
        ectC NONE
        thpD 1603616 .. 1603642 + -12.3    -5.626   CCTGGCCGGATAAGA         CGCTCCCTGGA TTTAT TTCAGGGGGCG         TTTTTTTGTGGGCTC 100 72
 CLH39_07170 NONE
 CLH39_07175 1605358 .. 1605384 +  -7.8  -3.25823   ATTAGGTTCCATCGC         CAGGGCCCGGGC GAT GCCCACGCGCTG         TTGCTGTCCGCCAGA  59 356
 CLH39_07200 1610778 .. 1610797 +  -3.4  -3.25942   TACGAGCCATTGCCG            GCTCAAGC GGCA GCAGGAGC             TTGATATGAAAGGAT  46 2
 CLH39_07205 1611047 .. 1611071 + -15.8  -4.39571   AAATTAGGCGGCTAA          GGGCCAGAAC CCAGT GTTCTGGCCC          TTTTGCATTTGTGCC 100 39
 CLH39_07210 NONE
 CLH39_07215 1614084 .. 1614105 + -11.6  -4.67943   GTAGTCGCCTTGAAA           GCCCAGAC CATGTC GTCTGGGC            TTTTGTGTCTTGGGC 100 48
 CLH39_07220 1615386 .. 1615400 +  -4.2  -3.45776   TTCAATAAGAGGCGG               GCATGG ATC CCATTC               TTGTCATCAGTTTGC  52 33
 CLH39_07225 1616533 .. 1616544 +  -7.2  -3.60792   CGATCATCACTCCAG                GGGC CGTT GCCC                 TTTAGCCATTGACCG  60 358
 CLH39_07235 1618455 .. 1618465 +  -6.8  -3.75105   TGCAAAAGGACTGGT                 CACC CAA GGTG                 TTGTTCATGGATTGC  63 270
 CLH39_07245 1620495 .. 1620536 +  -7.9   -4.1552   CCCAGGCGATCTAAA TCCAAACGGCTGTGTTCTT GCAC AAGGGCACAGCCGGCCGGG  TTTCTTGAGCCAGTG  74 27
 CLH39_07250 1621069 .. 1621084 + -10.4  -5.08255   TTGCTTATAAAAAAA              GCCCTC GAAA GAGGGC               TTTTCTTTTAGGCCT 100 50
 CLH39_07265 1624747 .. 1624769 + -12.2  -3.01791   TTTCTCACACTAATA           TTGTTTCGTT TGA AACGAAACAA           TATTCAGGAGAGGAT  76 75
 CLH39_07270 NONE
 CLH39_07275 1627033 .. 1627046 +  -2.3  -4.98522   AAGAACACAGAGTGG               CACTG CTTA CTGTG                TTTTTCTATACACTT  70 53
 CLH39_07280 1628055 .. 1628093 +  -9.6  -4.42788   ATCAGGAGACCGGGT   CAGGACGGGTGAAGGTGT CGC ACATTTTCAGCTGTCCGG   TTTTATAGCCTTCCA  87 344
 CLH39_07295 1630792 .. 1630825 + -11.7  -3.85698   TTTGTGGGGATTTTG     GCGACGGCGCTAAGA AGTA TCTTGAGGCCGTCGC      TTTCTGCGCAGGAAG  86 13
        ribA 1633296 .. 1633324 + -17.6  -5.00895   TTATCGCGGTATCAA        CACAAAGGGCCA TCAAT TGGCCCTTTGTG        TTTTTCTCTGGTGGA 100 89
 CLH39_07320 1635302 .. 1635317 + -10.4  -3.21416   AGCGCTGCTCGGCCT              GCCCCT TGAT AGGGGC               TTGCTCGTACAGCTG  68 135
 CLH39_07330 1637618 .. 1637674 +  -4.4  -4.07568   AGCGAACTCAGGTAC TGGATGCCAATTGTCGT-AGTCGGCCT GGGT GGGCTGGTTTGCGACGAGCGGCGTTCA TTTTCACAACCGGGG  61 39
 CLH39_07345 1642085 .. 1642097 +  -7.7  -4.31813   ATATACCTTAATCTT                CCCTA AAA TAGGG                TTATTTTCATATATT  76 30
 CLH39_07350 1643585 .. 1643611 + -17.4   -5.0916   CTTCGTGATGAAAAA         GCCCCTGATCTT GTT AAGGTCAGGGGC         TTTTTCTGTTCAGGG 100 78
 CLH39_07365 1649558 .. 1649576 +    -8  -2.91912   CCATCCAGAACCACC             TGCAGGGC TAC GCCCAGCG             TCTGTGCATCAATGG  56 325
        ssrA 1656709 .. 1656746 + -18.7   -4.5442   TCCACCAAGATATCC   CAAGAAACCCAACAGCT TAAC GGCTGTTGGGTTTTTTG    TTTTCTGCTTGCCCA 100 34
 CLH39_07410 1657483 .. 1657493 +  -8.2  -4.33153   CGTTGTGTTCGGCAT                 GGCG TAA CGCC                 TTTCTTCCTATTCCC  79 68
 CLH39_07415 1658580 .. 1658600 +  -6.8  -2.60392   GACCGGGCAGTATCA            GGCACAGG GTGCA CCTCTGCC            ATTGCTTAACACCTG  52 69
 CLH39_07420 1659446 .. 1659456 +  -6.8  -3.64703   TTCTGCCAGGGGGAT                 GGCT TCC AGCC                 TTTGCATGACCAGGG  63 148
 CLH39_07435 1662337 .. 1662364 +  -5.5  -3.62224   GAGCTGTTCAAGAAG        GCG-CTGGCAGC AGTGA GCTGCGGGTCGC        TTCTTGAAGGGCTCT  56 146
 CLH39_07445 1664130 .. 1664141 +  -4.4  -3.05384   ACCTAATGAAGTCTT                GGTT TTTG AACC                 TTCAATCAGGAGAAA  48 199
 CLH39_07450 1664636 .. 1664647 +  -3.6  -3.14132   CGAGCTGGAGGTGAC                GGCT GTAC GGCC                 TTGATCGCCGCCAGA  46 10
 CLH39_07455 1665206 .. 1665238 + -17.9  -4.91712   CCCAGCTGATACAGA      CAGCCCCTTGTTG AATCTGA CAACAAGGGGCTG      TTTTTATGCCTTGCC 100 43
 CLH39_07465 1668194 .. 1668210 +  -2.2   -3.6502   TGCCAAGCTGATTGC              CTTTCG TCGTC CGGAGG              TTTGAATGGGGCGTG  47 4
 CLH39_07470 1669102 .. 1669117 + -10.4  -3.36515   TTGCTGTTCCAGGTC              CGGCTC GGGT GAGCCG               TCTTTGCGGCTGCCG  69 324
 CLH39_07480 1670303 .. 1670325 +  -9.2  -5.28481   TGAGTGCCAAAAAAA           GCCAAGGA GAATGAG TCCTTGGC           TTTTTTCATTGAGTC 100 38
 CLH39_07490 NONE
 CLH39_07495 1673533 .. 1673543 +  -2.4  -2.61264   ATGGGTTGCCCATGC                 ACGG CTG CCGA                 CTTGTCGGTAACGCC  38 376
 CLH39_07505 1676667 .. 1676684 + -14.1  -3.60627   GATGTCTTGTGAAAA             GGGGGCG GTGC CGCCCCC              TTTCACGTGCCGTCA  89 39
 CLH39_07515 1677965 .. 1677981 + -10.8  -5.37593   ACTGATGTGTAAAAA              CGGCCC ATGTA GGGCCG              TTTTTTGATTTAGCA 100 54
 CLH39_07525 1681388 .. 1681446 +  -5.6  -3.94772   CCCAGGCTGAATACC CGGAGCATAGC-CGACAGC-GATCACATGA TGT TCATGT--TCAGCTGTTATGCTATGCCCCG TCTTTATTTGTTGAA  61 79
 CLH39_07530 1681980 .. 1681992 +  -9.1  -2.78384   TCTGCCATCAATAAG                GCCTG ATC CAGGC                TGTCGTAGGCCAGGG  58 200
 CLH39_07540 1684506 .. 1684527 +  -2.9  -4.37092   TCACCTACGTACAGG           CAGTCTTTG GGAT CAAAGCCCG            TTTTCTCGGCGGCAT  64 243
 CLH39_07560 NONE
 CLH39_07565 NONE
 CLH39_07570 1691735 .. 1691762 + -15.6  -3.95183   ATCAGCAACAAGAAA        GGCCT-GGGGGGG CTT CCCCCTCAAGGCC        TTATTGTCTGTGTGG 100 43
 CLH39_07575 NONE
        aroA NONE
 CLH39_07585 1694965 .. 1694986 +  -5.1  -5.25803   CGGGCTTTGTTCACT           C-CACCGGGT TCT GCCTGGTGTG           TTTTTTATGGCCATT  86 53
 CLH39_07590 NONE
 CLH39_07595 1697129 .. 1697148 + -13.6  -4.23758   TGCATACTGATTACA            CAGGCCCT TTTC AGGGCCTG             TTTTGCGTGTGCGCT 100 49
 CLH39_07600 1697529 .. 1697545 +    -5  -3.95153   GTTGCGCCCGAGACC              GTCGCC CCGCT GGCGCC              TTTGTAAGTCCTTGG  61 2
 CLH39_07605 NONE
       rfaE1 NONE
        rfaD 1700829 .. 1700847 +  -9.6  -4.04318   AGGCAGCACCATAAA             GGCTTCTT TCC AAGGAGCC             TTTATCATGTCTACC  80 117
 CLH39_07620 1701289 .. 1701312 +   -11  -3.72324   TGTTTAGTCTGCATG          GGCAGTCAGT GCGA GCTGGCTGCC           TTCTTGCTCAAGGTA  82 74
 CLH39_07625 1702249 .. 1702263 +  -4.2  -3.24755   ATCTTTAATTAATTA               GGGTTG CCG TAGCCC               ATTTGTTTGGCCAGT  50 29
 CLH39_07635 1704384 .. 1704406 + -11.4  -3.90922   AGGCGAGTGGCTTCG           GGCTTTGGAA TTC TTCTAAAGCC           TTATTTCAACAGAAT  84 39
 CLH39_07640 NONE
 CLH39_07645 1706146 .. 1706171 + -16.9  -5.47821   TCTAAGCGCCCATCG         GCCTGCTGGGG ACTT CTCCAGCAGGC          TTTTTTTCAGTGCGT 100 36
 CLH39_07650 1708085 .. 1708114 + -13.6  -5.15381   GCCCCAAGGCATGAA       GGCCCGCGCAGCT TCTTT GGCTGC-CGGGCC       TTTTTTGGGTATATT 100 49
 CLH39_07655 1708921 .. 1708945 + -12.1  -5.28176   AGGCTCAGACAGAAA          GCCCTCCTGCT TAT GGCACGAGGGC          TTTTTTGTGGGTACA 100 57
 CLH39_07660 1709638 .. 1709654 +    -3  -4.56597   ATTGCCACGGCGTGC             TTGTGCG GCAC CGC-CAA              TTTTTCCACCGGCGC  69 372
 CLH39_07675 1711033 .. 1711058 + -17.7   -4.9792   AAGCGAACAGCGATG         CAAAGGCACCC AGGC GGGTGCCTTTG          TTTTTATGTGGGATC 100 46
 CLH39_07680 1711888 .. 1711907 +  -6.4  -3.74526   CGCCTTCACAAAAAA            GGGGCA TTTTGCTT TGCCCC             TTGTTCCCTTAATAG  62 76
 CLH39_07695 1714744 .. 1714771 +  -7.1  -5.50499   TTGGCAGGATCAAAA       CCGAGGATAGCGA TTTG TCGC-A-CCTCGG        TTTTTTTACGTCTAA 100 121
 CLH39_07700 1715941 .. 1715957 +  -6.6   -2.7556   GATCAAGAAGGCTAG              GAAACC AGCAC GGTTTC              TGATTCGATCCGATT  53 39
 CLH39_07705 NONE
        paaI NONE
        paaJ NONE
 CLH39_07720 1718675 .. 1718691 +  -2.2  -4.59109   TCAGGAAACCTAAGA              CCGC AGCAACATA GCGG              TTTTTCAAGAATCTG  62 28
        paaN NONE
 CLH39_07730 NONE
        paaD NONE
        paaF 1723100 .. 1723121 + -13.7   -5.0916   TTGACGTCAAAAAAA           CGGCTCTGC TCTG GCAGGGCCG            TTTTTGTATTCCGCG 100 51
 CLH39_07745 NONE
 CLH39_07750 NONE
        uvrC 1726524 .. 1726542 +    -6  -2.79239   GCCTTTGTTTTAAAT             TAGGTTGG TAT CCAAGCTA             TGCCTTTTAATCTGC  51 47
        pgsA NONE
 CLH39_07765 1728419 .. 1728444 + -10.5   -5.5074   GCCATAAAAGAAAAC         CCCAAAAACCT ATCA AGGTTTTGGGG          TTTTTTCTTGCCTTG 100 74
 CLH39_07775 1731031 .. 1731063 + -15.7   -5.4505   CTTCTCTGGTTGCAG     GCAGCCCACCGTAC GCTCCA GT-CGGTGGGCTGC      TTTTTTATTGGCACA 100 67
 CLH39_07780 1732517 .. 1732540 +  -3.7  -2.57239   GCCGGCTCAGTGGAC          CGGTCCAGC AGCAAG GCAGGGCTG           ATATGTTTGGCTCTT  43 1
        ccoS 1732787 .. 1732821 +  -3.5  -5.14965   GACACACAGTCTGCG    GGGCGGAAA-CACGCG CGAG CGCGTGCTTTCCGAAG     TTTTTTGATAAGCAT  78 84
        ccoN 1734377 .. 1734389 +  -3.3  -2.79796   GCGATCCAGCCCTGG                TGGGT CCA ACCCC                TGTGCTGGCCTAAGG  41 0
        ccoO NONE
 CLH39_07800 NONE
        ccoP NONE
        ccoG NONE
 CLH39_07815 NONE
 CLH39_07820 1738268 .. 1738288 + -14.1  -5.93809   CCAAAAGACAAAAAA            GCACATGCA AAC TGCATGTGC            TTTTTTTTGTGCGCG 100 53
        clpB 1742142 .. 1742163 + -15.9  -5.30616   ACGGCAGTAAAAAAA           GCGCCTTGG GCAA CCAAGGCGC            TTTTTCTTTGGCTCG 100 121
 CLH39_07845 1749651 .. 1749662 +  -2.2  -2.64595   AGCGCCTCACCCAAA                CGAT TCGC GTCG                 CTTGTCGTCAGGGTT  39 46
 CLH39_07850 1751015 .. 1751025 +  -2.4  -2.75481   TTGGCCTGCAAGCAG                 GCGG CGG CGGC                 TGCTTCGGGTTCCAG  39 440
 CLH39_07865 1753512 .. 1753534 + -16.3  -2.63112   TAAGCCTTTCATGTG           CCCCGCAGC CTCGC GCTGCGGGG           TGATCTACCGGGTTT  91 38
 CLH39_07870 NONE
 CLH39_07875 NONE
 CLH39_07880 NONE
 CLH39_07885 NONE
 CLH39_07890 NONE
 CLH39_07895 1760123 .. 1760137 +  -9.2  -5.48825   CAGAAACAAAAAAAA               CCGCCT TGT GGGCGG               TTTTTTTGACTACTG 100 198
 CLH39_07915 NONE
        parC 1767833 .. 1767867 +  -2.7   -5.0666   AGAGTCCTGAATTTG     TATAGCCGCCGGAGG CTGGC CCTCCGCCTGATAGA     TTTCTTTTTTGAGTG  76 31
 CLH39_07925 NONE
 CLH39_07930 NONE
 CLH39_07935 1771592 .. 1771617 + -11.2  -5.65927   ATCCTTGAAGATAAA         CCCCATG-CCC TTGAC GGGACATGGGG         TTTTTTCTTTGGGTG 100 82
 CLH39_07940 1772616 .. 1772642 +  -2.2  -3.67622   CAGTGCTTCGCCCGA         GGGACAGTCATG AAT TATCTCTGTCTC         TTGCTTTTGCCGCTG  50 13
 CLH39_07945 1773489 .. 1773501 +  -7.7  -3.67597   CAGGGCAGGCAATGG                CTTGG GTT CCAAG                TTGTTGGCTGAACAG  67 290
 CLH39_07950 1775173 .. 1775205 + -11.9  -3.32769   GGCAGGGCCGAGTGT      GACAGGACTTCTGCG ATT CGCAGAAGCCCAGGC      TTACTGCTTTGCAGG  79 499
 CLH39_07970 NONE
 CLH39_07975 1779018 .. 1779039 + -10.9  -4.15703   CAGGGTGCCTTCACA           TTCCGACTC GCCA GGGTCGGAA            TTGTTGTTTCTGCCC  88 100
 CLH39_07980 NONE
 CLH39_07985 1782117 .. 1782131 +  -6.4  -4.21811   GTCGTTGAGCCGACG               GCGGTA GAA TACTGC               TTTGTCTGTTGCGTA  68 33
 CLH39_07990 1782493 .. 1782507 +  -4.2  -3.37901   ACTCGGCTAAGGTTG               CTTCGG CTG CCTAAG               TTGATTCACCTGTTT  52 12
 CLH39_07995 1783132 .. 1783142 +  -5.4  -3.68351   TGCACAGCCACTGGG                 CGAT TTG ATCG                 TTTCAATCCTGCGCA  59 18
 CLH39_08000 1784016 .. 1784037 + -10.8  -4.61868   TTCGCCAAACCTTAA           CGGCCCGT TTTTAT GCGGGCCG            TTTTGTATCTGGGTC 100 55
 CLH39_08010 1786117 .. 1786138 + -15.9  -4.46212   CCATAGATGCAAAAA           GGCCCTGCA CTAG TGCAGGGCC            TTTTCTCGTCACCGA 100 166
 CLH39_08020 1789747 .. 1789764 +  -3.3  -3.53224   CTGAGCAAGACTTGC             CCGGCTC ACCG GAATCGG              TTTGCCGGGCAAATC  49 71
        rlmN NONE
 CLH39_08030 NONE
 CLH39_08035 NONE
 CLH39_08040 NONE
 CLH39_08045 1794719 .. 1794732 +  -3.1   -3.4493   CAGATCAAACTTGAT               GC-CCT GGC AGGAGC               TTAATTCATGTCTCT  47 8
        bamB NONE
         der NONE
 CLH39_08060 1798423 .. 1798437 +  -2.1  -3.85698   AACCCGGTAAAGTAG               TGGGA TTCGC TTCCA               TTTCTGGAAAAACAA  53 93
 CLH39_08065 1798738 .. 1798767 + -17.9  -4.55295   CTTTGTACTCTGAAA       GACCCGTCTCGCGG TGC CCGCGGG-CGGGTC       TTTGTTTCTGGAGCA 100 55
        hflX NONE
        hflK NONE
        hflC 1802088 .. 1802121 + -19.7  -3.04122   TCCCCGCTAGAGAAC     TTAGGGCCGCTGGGTG TTC CACCC-GCGGCCCTGA     TCGTTTATACTAGCG 100 41
 CLH39_08085 1803393 .. 1803418 + -11.9  -3.34845   AGTGGCAAGTTAGGG         CGCTGTAAGCC AGGC GGCTTGTAGCG          TTGGTGATTGTTATT  80 18
 CLH39_08090 1804820 .. 1804836 + -11.5   -4.1021   TACGGTGCGTACAGA              GCGGCCT GAA GGGCCGC              TTTGTCGTTCTGGAC  86 75
 CLH39_08095 1805557 .. 1805567 +    -4  -3.90316   CATATTGGGCTATCT                 GTTA CGC TAAC                 TCTTTTTACAAAGGT  57 112
 CLH39_08100 NONE
 CLH39_08105 NONE
 CLH39_08110 1810325 .. 1810345 + -12.6  -5.67967   GAGCAAGATAAAAAA            CCCGGTCT GAATA AGACCGGG            TTTTTTTGTGCTCAT 100 60
 CLH39_08150 NONE
 CLH39_08155 1822162 .. 1822175 +  -8.1  -5.10208   CGTTTGGCGGACAAG               GCTGC ACCG GCAGC                TTTTTGTTGGGCTTG  91 171
 CLH39_08175 1825669 .. 1825713 + -15.2  -5.43553   AGGGCCAAACGAAAG CGGCCTGTAATTGAAATACCC TTAG GGGCATC-CAATTACAGGCCG TTTTGTTTTTTGGGT 100 80
 CLH39_08185 1829131 .. 1829147 +  -7.9  -4.07568   CGCAGTCGCAGGGTA              CGCACCG GGT CGCTGCG              TTTTGCGCCGCCCCA  71 182
 CLH39_08195 1830562 .. 1830603 +  -4.4   -3.4268   GATGAGCAGTTCATC CCTTTACCTGCGGTGTAA TGCTCT TTACGTCGATGGTGGAGG  TGTTTGACCTTGTAC  52 8
 CLH39_08220 1833513 .. 1833536 +  -9.6  -5.93809   GGTTTGATGAAAAAC          CATCGC-GGCG TGC TGCCTGCGATG          TTTTTTTTGTCGCCG 100 54
 CLH39_08255 1841512 .. 1841524 +  -9.1   -3.1506   GACGGGCCTTCTGTA                CAGCG TCG CGCTG                TTCCTGAACGGCTTT  60 84
 CLH39_08265 1844507 .. 1844538 +  -4.5  -2.88544   TAAAACGTCCGGGGC     CAG-TCGGGCTGG CGGGAGTT CC-GCCCGAGCTG      TATGTGGAAGTACAA  47 132
 CLH39_08270 1845743 .. 1845770 +  -9.2  -5.64274   GCCAGAATCAAAAAA        GCCGAAACAGTG CTCA TGTTGTTTCGGC         TTTTTTTATGGCTGA 100 83
 CLH39_08285 NONE
 CLH39_08290 1848073 .. 1848087 + -11.4  -3.38951   CCAAGCATAAAAAAA               CCCGCT GGC AGCGGG               TTCGTGTCTTGATGA  77 459
 CLH39_08300 1848445 .. 1848468 + -13.2  -5.58522   CAAATTCCTCAAAAA          GCCGATCATC GCAA GATGGTCGGC           TTTTTGTTTTGTGTG 100 41
 CLH39_08340 1856148 .. 1856179 +  -3.6  -4.20084   TAAAATCTGCAAGTC      TCGATCCAGT-CGGG AGT CCCGCACAGGAACAA      TTTTCAATCCATGGT  62 121
 CLH39_08350 NONE
 CLH39_08355 1859879 .. 1859907 +   -11  -6.06529   AAACCGTTTTCAGAC        CGGTTTGCCTGT GGTCA GCGGGCAAGCCG        TTTTTTTTGTGTCTG 100 98
 CLH39_08360 1860328 .. 1860349 + -10.2  -5.73339   TCCTGAGACTGAAAA           CCGACTGT AGAAAC ACAGTCGG            TTTTTTTATGGTTGT 100 51
         rnr 1863485 .. 1863503 + -13.1  -4.80736   GGCGTACAATGCCAA             GCCGGGC TTTTT GCCCGGC             TTTCTTTATTTGCTC 100 40
 CLH39_08375 1864273 .. 1864306 +  -3.2  -3.47896   AAACCTTGCGCCAAC     GTAGCCAGTCTTAA TTTCCT TTAAGTCTTGTTAC      TTGCTTAATTACTTA  47 12
 CLH39_08380 1865688 .. 1865736 + -16.2  -2.63901   AGTCCTAAGCTCTTC GCA-CATCTAGCCATGGTTCAGC CTGG GCTGTATCAGGGCTAGATGCTGC ATTGCTTGCTGCAAT  91 33
 CLH39_08390 NONE
 CLH39_08395 1869411 .. 1869421 +  -2.4  -2.94218   TGAAGTAAGTGTGAA                 CCGG GCG CCAG                 TGTCTGCTGGCGCCT  41 33
 CLH39_08400 1870565 .. 1870588 + -15.4  -5.49809   TGTTGTTGTTGTTGA          GTGAGGCAAG ATCG CTTGCCTCAC           TTTTTTTGGCCTTTC 100 158
 CLH39_08445 1876668 .. 1876691 +  -2.3   -3.9777   GGTAGCGATGACAGA          CGGTAGTGC TTGCTT GCCCTGTCG           TTTGTCACTATTAAG  55 231
 CLH39_08450 1877040 .. 1877055 +  -3.4  -3.53091   GAAAGACGCTGTGAA              TTAATT TTTA AATTAA               TTTACGCAAAAGACT  49 22
 CLH39_08455 1877233 .. 1877254 +  -8.8  -5.65177   TGCTAGTCGAATCAA           GCACTTAG GTAAAA CTAAGTGC            TTTTTTTGTGCCTGT 100 48
 CLH39_08460 1878728 .. 1878744 + -10.8  -2.55267   TTCTTCCATAAAAAA              CCCGCC ACGGG GGCGGG              TAGATTCCAATCTTT  67 245
 CLH39_08490 1884270 .. 1884281 +  -5.8  -3.20382   CTTACCGGCTTCAAC                GTGC TTGC GCAC                 TTCGTCAATGTCGGC  51 453
 CLH39_08500 1885795 .. 1885812 +  -5.5  -4.08651   GTTGCCGGATGAGGG             TGGCGGC GATT GTCGCTA              TTGTTTCATTCGCAT  63 192
 CLH39_08510 1887684 .. 1887694 +  -3.2  -3.97674   GCCCAGCATTTGCAT                 TTGC TCG GCGA                 TTATTTCCGTGGTGA  58 70
 CLH39_08535 1890985 .. 1891023 + -11.1  -3.55563   CCTGCTTAGGAGCTT   TCACTCCAAAGGTTAGG CAATA TCTATCCTTTGGAGCGA   TTTCCAACCTACCGT  79 62
 CLH39_08560 NONE
 CLH39_08565 NONE
 CLH39_08570 1894601 .. 1894619 +  -3.9  -2.57013   GGCCGTTGTAAGCAT            CAGC-ATG GCTG CATCGCTG             TGGATTGCGTTGGGG  43 102
 CLH39_08575 NONE
 CLH39_08580 1895886 .. 1895898 +  -3.3  -2.95192   TATGGGGAGGGCATT                GGCGA TGA TGGCC                GTTTCTAACCTTGGC  42 5
 CLH39_08585 NONE
 CLH39_08590 NONE
 CLH39_08595 NONE
 CLH39_08600 1897575 .. 1897596 +  -4.3  -4.37711   AGCCTGTAACTGTGA           GCCGCTTCG ACGT TGGAGGGGC            TTTTACATTTGGTGG  66 75
 CLH39_08605 1898933 .. 1898950 + -11.3  -3.13772   GCTTGCAGGAGTGTT             GCCCAAG CAAA CTTGGGC              TGATTTTACTACCGT  74 285
 CLH39_08610 NONE
 CLH39_08615 NONE
 CLH39_08620 NONE
 CLH39_08625 NONE
 CLH39_08630 1904711 .. 1904725 +  -7.8   -2.6027   AGTGAACGTGACGAT               GATCCC TCC GGGGTC               TGACTTAACTTTTAG  55 8
 CLH39_08635 NONE
 CLH39_08640 1906250 .. 1906264 +  -9.2  -6.09196   CGCAAACAAACTCCA               GGCCGC CTA GCGGTC               TTTTTTTATTTTCAG 100 52
 CLH39_08645 1907267 .. 1907286 +  -2.1  -2.87344   GACCTAAGGCCATTA            TCAAGCT GCTGCG AGCCTGA             TATGTGGGACAACTC  41 6
 CLH39_08650 NONE
 CLH39_08655 NONE
 CLH39_08660 NONE
 CLH39_08665 NONE
 CLH39_08670 NONE
 CLH39_08675 NONE
 CLH39_08680 NONE
 CLH39_08685 1913702 .. 1913721 +  -8.5  -5.08088   ACTTTTCTATCTCCG            GCCTCGG CTATGT CCGGGGC             TTTTTGTTGGACGTT  93 57
 CLH39_08690 NONE
 CLH39_08695 NONE
 CLH39_08700 NONE
 CLH39_08705 1920702 .. 1920718 + -12.3  -5.45652   AAAGAAAAGTATCCA              GCCGCTT GAT AAGCGGC              TTTTTTATTGGGAGT 100 183
 CLH39_08715 NONE
 CLH39_08720 NONE
 CLH39_08725 1923717 .. 1923731 + -11.4  -3.11208   AGGCGGTAGCTACTG               CGCTGC TGC GCAGCG               TCCTTTTCAATGGCG  74 32
 CLH39_08735 1924766 .. 1924784 + -10.2  -3.48593   AGTGCTTAGTAGTTC             CAGCGCCG CTG CGACGCTG             TTGTCTGGCGAAGTC  71 176
 CLH39_08755 1926973 .. 1926994 +  -8.8  -5.77988   TGCTAGTCGAATCAA           GCACTTAG GTAAAA CTAAGTGC            TTTTTTTGTGTCTGT 100 255
 CLH39_08760 1927601 .. 1927629 +  -9.5  -5.07011   GCGTCGGTCGATAAA        GCCGAACCCTTTG AAA TATTGGGTTCGGC        TTTTTCATTTATGTA 100 70
 CLH39_08770 NONE
 CLH39_08775 1929975 .. 1929987 +  -9.1  -3.17688   AATCGGTATTTAGCC                GGGTG TAA CACCC                TTGCTAGACTCGTTC  65 115
 CLH39_08780 NONE
        cysT NONE
        cysW 1932886 .. 1932910 +  -2.1  -2.55874   TCGTGGATGATCGCA          TTCGGAGTTCA TTA TGAGTATCGAA          GTTCGTCATCTATCT  39 31
 CLH39_08795 1934013 .. 1934046 + -20.5    -3.322   TTTTTGCAAATTATT     CGCA-ACAGGCTGACC CTA GGTCAGCCTGTCTGCG     TTAGTATCTGGAGGT 100 42
 CLH39_08800 NONE
 CLH39_08805 NONE
 CLH39_08810 1936420 .. 1936457 + -25.7  -3.79251   TTCGTGTTGTTTTTT   CTGGCCCCTCGCTTTGC ATCT GCAACGCGAGGGGCCAG    TTTCGTAATAAAATC 100 54
 CLH39_08815 NONE
 CLH39_08820 1938372 .. 1938385 +  -9.5  -2.52516   GAAAACCCCAAAAAA               GCGGC TCAG GCCGC                CTTGCTAATGGGCGC  64 59
        trkD 1940278 .. 1940302 + -11.5  -4.99035   GCCAGTAGAAACAAA          GAATGGGCCTT TTC AAGACCCATTC          TTTTTATCTGGCTAC 100 75
        hemN 1948618 .. 1948643 + -10.4  -2.80513   CGTCTGATTTAACAC         AGTGGCCGTC CTTGCA GACGGCCACG          ATTCTATTGCCCTGT  69 29
 CLH39_08870 1949892 .. 1949910 + -13.2  -3.63627   GCGGCCTAAACGGGA             TCAAGGGC TTA GCCCTTGA             TTTCGCGTATCAAGC  86 32
 CLH39_08880 NONE
        pbpC NONE
 CLH39_08890 1959622 .. 1959636 +  -5.6  -5.23765   CGGTATGGTGACCCC               GCCAGG CAG CCTCGC               TTTTTATATTCTTTC  86 150
 CLH39_08900 1961568 .. 1961592 + -14.3  -5.95946   CAAGCATTAAAAAAA          CCGGGGTTCTG AAT TAGAGCCCCGG          TTTTTTTGTTCTTGA 100 70
 CLH39_08930 1969216 .. 1969239 +  -8.9  -3.39449   GCGCAGTTCCGTGTC          CTGGTCAAC GGTGAA GTTGGCCAG           TTGCTCTTCGTCCAC  64 389
        recA 1975244 .. 1975273 + -19.3  -3.01712   TCCGGCTGCGGAAAA       GACAGCCCCGTCC AAAC GGCCGGGGCTGTC        TCTTAAAGCCAGAGC 100 192
 CLH39_08960 1975721 .. 1975737 +  -2.9  -3.45532   TTGAATAAGCCATCT              GCAATGC TTC GTTTTGC              TGTGTTTCTTGCTTG  47 37
 CLH39_08970 1979301 .. 1979321 + -10.4  -5.52384   CAGGCTGGATGAAAA            CGACCGCC CGTCA GGTGGTCG            TTTTTTTCATGCAAA 100 117
 CLH39_08975 1980080 .. 1980098 +  -3.1  -3.26842   TTGTTTTAGTCAGGT            CTC-GGGC TCAG GCCTGGAG             TTCCTGCCTTCTTTT  46 45
 CLH39_08980 NONE
 CLH39_08985 1982221 .. 1982240 + -12.8   -4.0641   TAAATAGTAGTACCA            GGGCCCGC TTTG GCGGGCTC             TTTGTCTGGCTGCCC  91 38
 CLH39_08990 1983279 .. 1983296 +  -4.1  -2.66296   TTGTCCCTGCTGCAA             GGCTTAGG GAT CCTG-GCC             ATTATCGGTATTGTT  43 90
 CLH39_08995 NONE
 CLH39_09000 NONE
 CLH39_09005 NONE
 CLH39_09010 1988006 .. 1988021 +  -2.6  -3.54424   TCCAACGATTAATTT              CTTTTA TTTT TAAAGG               TTTGCACGAATGAGC  47 29
 CLH39_09015 NONE
 CLH39_09020 1989282 .. 1989317 + -21.4  -3.41002   CTGAATAGCTGGTCA    TGAACCCGTCTGGAGA GCAG TCTCCAGACGGGTTTA     TTCATTGGGTCTTCT 100 48
 CLH39_09025 1989979 .. 1989989 +  -4.6  -3.06183   GAAAGCGCTGGTTGC                 CTGC GCG GCGG                 TTGCATAGGGCTAGC  48 7
 CLH39_09030 1990979 .. 1990992 +  -3.8  -3.75461   GCAGCTTTAAAGAGG               CGCA ACTCCG TGCG                TTTGCTCAAGGTTTG  54 31
 CLH39_09035 NONE
 CLH39_09040 1994814 .. 1994832 +  -3.8  -3.90744   GGGAAGGCGTGGCCC             GGTTAGCG CCT CGTTAAGC             TTGTTTCAAGAACGC  57 9
 CLH39_09045 NONE
 CLH39_09050 1996758 .. 1996774 +  -4.4  -3.50047   TTTGCGTCCCTGATT              GCCTTT GGCCA AAGGGC              TTGTCGCTTTGTGCG  54 138
 CLH39_09055 1999351 .. 1999379 +  -2.3  -3.14132   GGGGCAGACTGTGAA        CTGACTTTTGGGA GAT TCCAATGAGACAG        TTCATCAGGCGGCAG  42 110
 CLH39_09060 NONE
 CLH39_09065 NONE
 CLH39_09070 NONE
 CLH39_09075 NONE
        cpaB 2003027 .. 2003037 +  -2.4  -2.80307   CTGTGAGTTTGCTGT                 CTGG TGC CCTG                 TGTAGTGCAACTTTG  39 71
 CLH39_09085 NONE
 CLH39_09090 NONE
 CLH39_09095 NONE
 CLH39_09100 NONE
 CLH39_09105 2008089 .. 2008100 +    -3  -2.91383   GTAGTGCGATCGGGT                TACA TATT TGTA                 TATCTAAATGAGAAT  42 37
 CLH39_09110 2008692 .. 2008702 +  -5.4  -3.51934   GGACTTCGGTGTCTC                 CAAG CGT CTTG                 TCTTTATAAGAGGGC  56 48
 CLH39_09115 2009750 .. 2009796 +  -7.3  -4.25088   ATTCTGGCTCGCTAG TTCGGTCTG-CCCCTATGGATT GTTG AAGCCATAGGGCTCGGGCCGCA TTTCCTTTCTCTTTT  74 26
 CLH39_09120 2012513 .. 2012545 +    -4  -4.00234   CCCAGTAAGCATTGC     T-CCGTGCCGCCGCC TTCA GTCAGCGGCACGCCA      TTCTTGTCTTCCTTG  59 63
 CLH39_09125 2013748 .. 2013761 +  -2.3  -4.08767   GAAGTGACAAGAAGC               CAGCC AGTC GTCTG                TTTTGGACGGGTGCG  55 39
 CLH39_09130 NONE
 CLH39_09135 NONE
 CLH39_09140 2018822 .. 2018843 +  -3.7  -2.70932   TGGAGTGGCATTGCT           GTTGTCC ATCAACTG GGACAGC            TCATTCACAAAAGGG  43 370
 CLH39_09155 2021454 .. 2021468 +  -2.8  -3.79906   GGCCAGTCGCGGATG               TAGGCT TTG AGCATA               TTGTTCTCGAACTGC  55 92
 CLH39_09170 2023693 .. 2023706 +  -2.3  -2.99947   CAAAGCCGCCAAATC               GGCCT AAGG GGGTC                TGTATGTCCAGCTTG  41 19
 CLH39_09175 2025152 .. 2025164 +  -5.5  -2.77523   TGAAGGTAGCGCGGA                GCTGG CCG TCAGC                TGCTCTTCCTGAAGG  48 1
 CLH39_09180 NONE
 CLH39_09185 2027269 .. 2027288 + -10.7  -4.86001   ATTTGAAACGAAGAA            CGCCCTC AATGTG GAGGGCG             TTTTTGTGCCATGGT 100 64
 CLH39_09200 2030400 .. 2030411 +  -5.8  -3.53091   CTTCGTTTGCAACAG                GCCT TGAT AGGC                 TTTGGGAGACAGGGT  55 480
 CLH39_09210 2032102 .. 2032140 + -20.4  -4.57073   AAGGCTGACGACGTT   GGTCTCCCCGAGCCTTCT TTG ACAAGGCTCCGGGAGACC   TTTTTCAGGGGCATG 100 68
        leuC NONE
        leuD 2034416 .. 2034435 +   -15  -3.66429   GGGGCAGCCAAGATG            CTCCGGCC ATCA GGCCGGAG             TTCTTCACACTTATT  95 86
        leuB NONE
         asd 2036700 .. 2036717 +  -4.1  -2.83164   TGCGCCGCATGTTGC             GCATCGCT TTG GGCGA-GC             TCTAATCATGGCTGG  44 3
 CLH39_09235 2038110 .. 2038120 +  -2.4  -3.18264   TCAGCCGCCTTCGGA                 CGAG CCT CCCG                 TTCGTCAGTAAGGCA  42 4
 CLH39_09240 NONE
 CLH39_09245 NONE
 CLH39_09250 2041458 .. 2041476 + -13.1   -5.4505   ATTTCATGATTCACA             CGGGGGC ATCTG GCCCCCG             TTTTTTATTCAAGGA 100 45
 CLH39_09255 2042204 .. 2042226 + -11.2  -5.37171   TCTGTACTTATTGCC           CCGACCCGCT TAT GGCGGGTCGA           TTTTTATTTGGTCTT 100 69
 CLH39_09260 2043165 .. 2043182 +  -4.3  -4.75063   AGGCAATGGCTGGGT             TTTTTAA GCCG TTAAAAA              TTTTTACAGTTTTAT  74 117
 CLH39_09265 2044825 .. 2044855 +  -6.9   -4.9218   TGCTCAAAAAAAATT      ATGGCCCGATATTC TTTA GAA-GTCGGGCCAA       TTTTTATAATCCATA  86 71
 CLH39_09275 2047258 .. 2047270 +  -4.7   -4.1899   ATAGCGTTCCCGAAT                CCAGG CGG CCAGG                TTTTCGCTCCAGTCC  64 487
 CLH39_09290 2049759 .. 2049775 +  -7.2  -2.91681   TCTAAAAAGCACACA              GGTCGC TTCAT GCGGCC              TGTCTGCACTTAAGG  57 52
 CLH39_09295 2050309 .. 2050330 + -10.8  -2.90763   CCGAGTGAAACGGCA           CGGTGGCG ACGTGA CGCCGCCG            TGTATCAGCTATGAA  70 42
 CLH39_09300 2050922 .. 2050942 + -16.9  -5.63517   GAGTTGCCAAAAAAA            GGCCGGGAA ATA TTCCCGGCC            TTTTTTATTTACGGG 100 88
 CLH39_09315 2053246 .. 2053260 +  -2.8  -2.64735   ACAGTCCAATCGCCG               CTGG ATGGCGC CCAG               TAGTCTCGCTAAAAT  40 8
 CLH39_09320 2054296 .. 2054309 +  -6.7  -4.60041   CTTGATACACTACTG               GGTTG AACT CAACC                TTTTTCAAAGTACGT  79 56
 CLH39_09325 NONE
 CLH39_09330 2056575 .. 2056594 +  -3.5  -4.36914   CAATGGACCTCTGGT            CGCCATC TTCCTT GATGGAG             TTTTCTGGACGAAAA  64 68
 CLH39_09335 NONE
 CLH39_09340 2057581 .. 2057601 + -12.6  -5.24129   TTCATGCAAAAAAAA            CGCCAGAC AAATC GTCTGGCG            TTTTTTCTGGGGCCG 100 47
        tsaD 2060948 .. 2060962 +    -7  -2.75294   CCAGGATGACACCCA               GCGCGG TTG CCACGC               CTTTACCGCCTTTAA  51 310
 CLH39_09365 NONE
 CLH39_09370 NONE
 CLH39_09375 2063857 .. 2063871 +  -9.2  -5.60993   TCTGGACTGAAAAAA               GCGGCT TCT GGCCGC               TTTTTTTGTGCGCCC 100 49
 CLH39_09380 2065464 .. 2065511 + -15.1   -5.4505   TAAGCAGGCTTGAAC TAAAACGCCCTGCAAATTGGA CAGAGT TCCAGTTTGCGGGGCATTTTG TTTTTTCTTGGGGGC 100 48
 CLH39_09390 2068388 .. 2068432 +   -10  -3.00946   TACGGCTATGGTTAT GCGGTCGC-CCAAGACCGTCTG TTC CAGATGGATATGGCGCG-CCGC TCCTTTGTAGGCACA  67 351
 CLH39_09420 NONE
 CLH39_09425 2076792 .. 2076802 +  -2.4  -3.32844   GTACTTCGGAAAGCG                 GTCG CGA CGCC                 TTGTAAGGTGGCGCA  44 9
 CLH39_09430 2077713 .. 2077752 + -27.4   -4.7254   TGAACGCAAGAGGAA  CGGCCCCCAAGCC-TGGAT GAA ATCCAAGGCTTGGGGGCCG  TTTTTCATGAGCCGT 100 38
 CLH39_09445 2080437 .. 2080463 +  -5.7  -5.06414   AGTGACGAAGTTGAA         AGCTGGCCTTG TCATC CTGGGCCAGCG         TTTTTGTTAACCACG  86 67
 CLH39_09460 2084188 .. 2084217 + -14.3  -4.56775   TTGAATCAGAGCCTG       TAACCCTGGAGCC AGCA GGCTCCAGGGGTG        TTTTTCAAAGAGCAT 100 47
 CLH39_09465 2085105 .. 2085124 +  -2.8   -4.8269   TTGGTGCATTCCAGG            CCTAGGCAG GCC CTGCA-AGG            TTTTTCATGATTATC  70 21
 CLH39_09470 NONE
 CLH39_09475 2086369 .. 2086381 +  -5.5  -3.64703   TCCAGTTCCTCGGGG                GTGCT GCT GGCAC                TTTGCATGCCCGCCA  58 226
 CLH39_09495 NONE
 CLH39_09500 2090607 .. 2090626 + -13.6    -5.252   TTGAACCATAAAAAA            CGCCTGCT ATTG AGCAGGCG             TTTTTTGTACGGCTG 100 60
 CLH39_09535 2098101 .. 2098121 + -10.3  -3.64822   CAGTTTGCTATCCAG            GGCCGGGGC AGA GCATCGGCC            TTTGGGTAGAGCAGT  77 43
 CLH39_09555 2102394 .. 2102422 +    -9  -5.42862   TTAGAGAGCAGGAAA       GCCGG-AAGTG-CT ACG AGTCACTTTCCGGC       TTTTTTTCGGCGTAT 100 72
 CLH39_09560 2103826 .. 2103863 +  -9.1  -4.68124   TGGCGCCTTGCTAAA   AAACGCCGGAAG-TGGCG CAA TGCCGCCTTCCGGCGCTG   TTTTCTCTATCTTCA  90 72
 CLH39_09565 2104754 .. 2104764 +  -2.4  -2.92246   AGGGATTACCTGAAG                 GGTC AAA GTCC                 TGTCGTTCGCGTTAG  41 52
 CLH39_09570 2105816 .. 2105844 + -10.2  -4.84146   TTTGACTGCTTCTTG        CAGGTGGGTTGC CACAA GCTGCCCGCCTG        TTTCTTTTGTATCCT 100 47
 CLH39_09575 NONE
 CLH39_09580 2107590 .. 2107617 +    -7  -5.80817   CCCGGATTTGGAAAA        CCGCG-TGAACTC TAG GGGTTAAACGCGG        TTTTTTTATATTCAA 100 51
 CLH39_09585 NONE
 CLH39_09590 NONE
 CLH39_09595 NONE
 CLH39_09600 2114569 .. 2114593 + -12.8  -3.13309   TGCTCAAGCCTGACT          GAGCCCTGCC ATCTG GGCAGGGCAC          TCTTAACTGATTCTG  79 28
 CLH39_09605 2115274 .. 2115296 +  -9.9  -5.94713   GAACGTTTTAAATAG           CCTGAATCC TTTCT GGATTCGGG           TTTTTTTTGTGCCCT 100 113
 CLH39_09610 2116233 .. 2116251 +  -3.2  -3.16921   TTGGAATCAAGTTAA             TTAATGCT GCA AGGATTAA             TTCATGCCAGTTACT  44 22
 CLH39_09615 NONE
 CLH39_09620 NONE
 CLH39_09625 NONE
 CLH39_09630 NONE
 CLH39_09635 NONE
 CLH39_09640 NONE
 CLH39_09645 NONE
 CLH39_09650 NONE
 CLH39_09655 NONE
 CLH39_09660 NONE
 CLH39_09665 2125735 .. 2125768 + -19.1  -5.41746   TTGGCACGATGCCGC     TGCCTCTCAAGCCTT GTGG AAGGTTTGAGAGGCA      TTTTTTTAACCGCTT 100 54
 CLH39_09675 2127843 .. 2127886 + -21.9  -4.20136   GACCCTGTCTGTGAA CTGCCCGCCAAAAGTTGGA CATTGA TCCGACCTTTGGCGGGCAG TTTGATTTTCAGGGT 100 93
        fusA 2130591 .. 2130640 + -19.3  -2.97802   GGAGGCTGATACTAA AGGGGGCGGGTATTCCTGTGTCT AACC AGGCACGGGAACACCCGCCCCGA TGCTTTGCCTGTTGT 100 32
        aceE NONE
        aceF NONE
        lpdA 2143281 .. 2143308 + -14.9  -5.56263   AGGCGTATTGGATCA        CGGCAGGTGCT ATCATC AGCGCCTGCCG         TTTTTATTTTGTAAT 100 64
 CLH39_09735 2144734 .. 2144745 +    -3  -3.78022   CTTCCTGAATATCAG                TAAG ACTG CTTA                 TTTCATAGGTCTAGG  52 33
 CLH39_09740 NONE
 CLH39_09745 2146074 .. 2146088 +  -7.1  -3.61398   GCTGCCGCCGTCTCT               GGCAG AATGG CTGCC               TTATTGAGAACACAC  62 4
 CLH39_09750 2147633 .. 2147649 +  -9.4  -5.59564   GCTCGATTGGAAAAA              CCCGCT TTTAT AGCGGG              TTTTTTTGAATTTAT 100 55
 CLH39_09755 2149101 .. 2149120 + -11.4  -3.95787   GGGTGGAACAAAAAA            GCCCTGCT GGAA GGCAGGGC             TTTATGGCTGTAGTG  84 44
        rpsB 2155217 .. 2155234 + -14.1  -2.53119   GTGACCCTTCGTATC             GCCCCGG CTTG CCGGGGC              ATGTTCTACAGAATT  81 94
 CLH39_09785 2156153 .. 2156188 + -21.2  -2.93853   ATCTAGCTTGTTTTT    TCAGGGCAGGCACCGT AGTG GCGGTGCCTGCCCTGC     TGCTTTACACTCTCT 100 40
 CLH39_09790 NONE
 CLH39_09795 NONE
        uppS 2158310 .. 2158324 +  -2.7  -2.80895   GTGCAGGGTAGCCCC               GCGCC TTGAC GGAGC               CTTATCTATGTTGAA  41 17
 CLH39_09805 2159170 .. 2159180 +  -4.6   -4.3129   CCTTGCTGTTAAGTG                 GGGC GTG GCTC                 TTTTAGTCCTGCGTG  66 9
 CLH39_09810 NONE
        rseP NONE
        bamA 2164169 .. 2164187 +  -2.5  -3.30619   TCTGATGTTCGTGTT            TAGTGGCA CAAT TGC-ACTA             TTCTGCAGCCTAATT  44 36
 CLH39_09825 NONE
        lpxD NONE
        fabZ NONE
 CLH39_09840 NONE
 CLH39_09845 NONE
 CLH39_09850 NONE
 CLH39_09855 2169821 .. 2169838 +  -8.4  -4.15222   AACGTCGTCAGCATA             GCCGCT AGTTCC AGCGGC              TTTATTGCACAGCAT  76 18
 CLH39_09860 2171642 .. 2171674 + -11.2  -3.36749   CGCAGCAAACAAAAA      GGCCTGCGCCAGGT ATCAC ACCGGGTTCAGGCC      TTGATGTTGAGGCTG  77 132
 CLH39_09870 2175158 .. 2175199 + -21.1  -4.08394   TCAAGCCAGTCAAAA C-TCAACACCCCGACATGGA AGC TCCATGTCGGGGTGTTGTCG TTTTCGGGCGCATCT 100 90
 CLH39_09880 2177892 .. 2177907 + -10.4  -4.80178   AGATTTGGAACAAAA              CGGGCT TTTT AGCCCG               TTTTATTCATTCGTC 100 40
 CLH39_09890 2178859 .. 2178882 +  -4.6   -2.8474   CGCCCAAGAGGTCTA          CGGTGACTGAA TTA TTC-GTCAGCG          TCATTGTGGCTACCC  45 16
 CLH39_09895 2179222 .. 2179241 +  -8.6  -2.92613   GCGCCTAGTTCGTCT            GCG-CCTGA TCA TCAGGCCGC            TACTTTCAGCTAGAC  60 33
 CLH39_09900 2180505 .. 2180516 +  -2.2  -4.13571   ATCTTGGAGCTGATA                TTCG ATGA CGGA                 TTCTGTTTTGTTTGA  57 18
 CLH39_09905 2181653 .. 2181670 + -14.1  -4.30576   CCAGGCAGACCGCTG             CGGCGCC TGAC GGCGCCG              TTTTCATAATGACGA 100 42
        mmsB 2182608 .. 2182637 + -11.4  -3.18681   TTCTGGCAGAGCGTA       GGGCAGGGGCTG CAATTC CAGCGCCTGTCC        TTGCTCCAGTTGAAA  71 42
 CLH39_09920 2184695 .. 2184724 + -18.7  -4.57341   TTCTGAAACGCTAAA       CCATTCAGGCCCT ATCA GGGGCCTGAATGG        TTTTTGGGGGCGGTT 100 27
        holB 2186761 .. 2186772 +  -2.2  -3.54424   ACCGTTTGCACCAGG                CATG TCGT CGTG                 TTTAAAAAAGTACCG  47 9
 CLH39_09935 2187703 .. 2187715 +  -3.5  -4.59081   TTTTATAGTAAAAAT                TAAAA TTT TTTTA                TTTTCTCTGCCTTTC  66 163
 CLH39_09940 2188833 .. 2188849 + -10.1   -5.4505   GGCAGGATGTAAAAA              GGAGCCT TGA GGGCTCC              TTTTTTGTTACGGCA 100 48
        arsC 2192090 .. 2192104 +    -7   -4.2704   CTCGATCTTGCCGTC               CGCGCC CAG GGCGGG               TTTGTTCATCATGGG  74 165
 CLH39_09980 2194752 .. 2194788 +    -3    -4.614   CAGCCCAGGGCGCCA   TCCTGGGGGCGCTGG CACCAGCA CCAGC-CATTCAGGA    TTTTCTCTCCTTGAA  69 240
 CLH39_09990 2196490 .. 2196511 +  -3.7  -3.63744   CGGATCTGGAGGCCA           TCGT-AGCCA TGT TGGCCGACGA           TATTTTGGGCCAGAA  52 151
 CLH39_09995 2197375 .. 2197407 +    -2  -4.11394   CATTGCCATTTCGCC      GCCTTTAGTGAAAA TCATT TTTTCAGGCAAGGC      TTTTCGCAATAGCAT  59 501
 CLH39_10010 2200095 .. 2200109 +  -3.5  -3.40689   TGGAAAAATGAACAG               CGAGC CCTGA GCTTG               GTTTTTAGCCTTATG  50 16
 CLH39_10015 2201050 .. 2201071 +  -4.4  -4.64598   TAATTTAAGCAGAAA           ACTCGTTG CTTTTT CAACGAGG            TTTTTAAAATGCTTA  70 155
 CLH39_10020 2202068 .. 2202094 +  -4.3  -2.53876   GCTGACCGCCAGTCA        GCGTGC-CGCGC AGTT GCGCATGAACGC         TGAGTTGAGATCAAC  44 69
 CLH39_10025 NONE
 CLH39_10030 NONE
 CLH39_10035 2205101 .. 2205113 +  -6.3  -4.56597   AACGCTGGGCAATTT                CAAAG CCG CTTTG                TTTTTGGGGCACGCG  73 155
 CLH39_10040 2206688 .. 2206720 + -10.5  -4.19817   GGAGGTAGCGCATTT      TGCGTCAATCCCCAC CCG GTGGGAGGTGACGCG      TTTTGCGTCAATACC  88 100
 CLH39_10045 NONE
 CLH39_10050 2208333 .. 2208343 +  -2.4  -3.83026   AATCAGTTTCAAGAT                 GCCG ATT CGGA                 TTTGGTGTGAAGAAA  53 5
 CLH39_10055 2208896 .. 2208919 +  -5.2  -3.23855   CTAGCTAATGCAGGG          CGGTATGACC ATAC GGTCAAGTCG           ATTGTTTTTCACCGA  53 42
 CLH39_10060 2209380 .. 2209403 +  -8.2  -3.07895   TGAGGATGTCCCAGC          TTGAGCAGTT CGAA AGCTGCTCAG           TGTCTTGCAAGTGAG  62 43
 CLH39_10070 2211892 .. 2211905 +  -2.3  -4.56775   CGAGCATCCGATTCA               AGCTC GCTC GAGCA                TTTTTAGGAACCAAT  62 202
 CLH39_10075 NONE
 CLH39_10080 2212568 .. 2212586 +  -3.1  -3.94853   GAAAACCAGACGTAA             TCTGGCG ATACC TGTCAGA             TTTGATCTTGACTTG  54 109
 CLH39_10110 NONE
 CLH39_10115 2217667 .. 2217693 +  -5.9  -2.81173   CTTGCTATCTTTTAT        TCCGCTC-AGAA ACCT TCCTTGAGCGGA         TATCGTCACGTTAAT  51 41
 CLH39_10120 2218840 .. 2218852 +  -5.5  -3.05224   CTATTCCTGACTACC                CGTGT ACG GCACG                ATTTTGGGCGACTAT  51 235
 CLH39_10125 NONE
 CLH39_10130 2221114 .. 2221127 +  -9.5  -2.53263   ATTTTTAATCCCAAG               GCCCC TTCG GGGGC                TGCATTGAGGATGAG  64 48
 CLH39_10160 NONE
 CLH39_10165 2227401 .. 2227412 +  -4.4  -4.15565   CCCGGAGAGAATAAG                GGTA AAAG TACC                 TTTTGGGCTCGTAAG  63 93
 CLH39_10170 2228766 .. 2228795 + -14.3  -4.05788   CATTCAAGCCCCCCT       GTACCCGTCCGGC GTAA GCTGCACGGGTAC        TTTCATTTCACACCC 100 335
 CLH39_10175 2229962 .. 2229996 + -10.7  -4.63218   TCTTATTCACCCCAT    GGGGAC-ACCGTGTCC CTGG GGGCTTGGTCGTCCCC     TTTTCTTAGAGGACG 100 504
 CLH39_10180 2230308 .. 2230339 + -10.3  -5.04249   TATTAACCCACCCTT     GAGGGCT-TTGACCC TCAA GGG-CAATAGCCCTC      TTTATTTTTTAAGAG 100 43
 CLH39_10185 2230744 .. 2230785 +  -6.7   -5.2894   CGCTCCTCCTAACTA GCGAATGTATGCCAGGTC TTTCATC GGTCTGGTG-ACATTCGC TTTTCTTTTGTCTTT 100 93
 CLH39_10190 2231215 .. 2231240 + -14.9  -3.65314   TGATCCTCTAATCCA         TGCAAACCCAT CAGG ATGGGTTTGCA          TTATCTCTATCACTT  95 38
 CLH39_10195 NONE
 CLH39_10200 2232783 .. 2232823 + -16.9   -3.4072   CACCCTTCATTAGAA  GGGTTCCTCAAGGGGCCTG GTC CAGGCCATTTGGGGAAACC  TTCTCATCAAACCTA 100 76
 CLH39_10205 2233628 .. 2233663 + -13.2  -4.45577   TTAACTTGTACCCAT    TGGGTCGCTGCGGCCC TTAT GGGGCGTTGCGACTCA     TTTTCTGGAGTTTCT 100 83
 CLH39_10210 2234406 .. 2234439 +  -8.1  -3.09516   GACAAGAATCTACAG     GAGCCAGACCG-TGCG AAT CGAATCGGTTGGGCTC     TTCACTACTCAGCAG  62 410
 CLH39_10315 NONE
 CLH39_10320 2255083 .. 2255094 +  -2.2  -2.75343   GCTAAACTGCTTCTT                GTTG ACTA CGAC                 CTTTAAGGGTATCCG  39 36
 CLH39_10325 NONE
 CLH39_10330 2255896 .. 2255908 +  -4.1  -4.82901   CTTGATTGGATAATA                TTGGA TGA TCCAG                TTTTTCTCGGACCAG  72 262
 CLH39_10335 2256921 .. 2256947 +  -3.6  -3.62275   TATCGAATTGGCAAG         CGCTATGATCTG TTT CACATCCTCGCG         TTTGAGGTGATCAAT  52 54
 CLH39_10455 NONE
         pap 2283788 .. 2283806 +    -6  -3.95986   TATAAGGCTGCACGT             GCTTTGTT ACC GACAAGGC             TTTACTTCGGTTAGG  64 36
 CLH39_10485 2290382 .. 2290394 +  -3.3  -3.64716   GATACGATTCCTGTG                GGGGC TGC GTTCC                TGTTTTCGGGCATGC  49 97
 CLH39_10490 2291425 .. 2291438 +  -3.8  -3.80733   AAGTAAAAACTGTCT               GCAC CGCCAC GTGC                TTATTCTCCGCTCCG  54 60
 CLH39_10495 2292149 .. 2292173 +  -2.1  -2.64788   TGCTCAAAAGCCGTT         TGC-GCGCTT TGCTGT AAGCGCTGCC          CCTTTCTTTCTTATC  39 9
 CLH39_10500 2293358 .. 2293386 + -16.7  -4.99645   GGTGGGTTTGAATGC        GCCGGGCGCCTGT TAA AGAGGCGTCCGGC        TTTTCTTTATGGAGT 100 147
 CLH39_10505 2293896 .. 2293916 +   -14  -5.75478   CGCTTTGCTAAAAAA            TGCCGCCC CAGTT GGGCGGCA            TTTTTTTCTCTGCTT 100 74
 CLH39_10520 2298040 .. 2298050 +  -2.4  -3.06798   CTTATGAATCGGTGT                 TGCC CAA GGCC                 TATCTATGCTATTTA  42 57
 CLH39_10525 2298789 .. 2298805 + -11.5  -2.92714   CGCGAATCCTTAAAC              GTCGCCG ACT CGGCGGC              TGCATTTTTCTTCCA  73 28
 CLH39_10530 2300085 .. 2300106 + -10.2  -5.77853   TATCGGTAGAAATAG           CCTGGCTT TGTGAC AAGCCAGG            TTTTTTTTGGCCGTT 100 52
 CLH39_10535 NONE
 CLH39_10540 NONE
 CLH39_10545 2303596 .. 2303635 +  -4.2  -4.16943   ACGATTTAAGGTGCA  TGGTTTGACCGGCTGCCTG TCA CGGGTAGCCG-TCCTGCTA  TTTTGGCCTGTACAA  63 32
 CLH39_10550 2304511 .. 2304521 +  -3.2  -4.36993   TTTTGCAGCCCAGCG                 CTGT GTT ACGG                 TATTTTTTTCGGCTT  61 99
 CLH39_10555 2305476 .. 2305495 +  -7.8  -3.70811   AGCAGCCAATAAAAA            CGGCCATC CCTG GATGACCG             TTTCCCATTGTGTAA  67 29
 CLH39_10565 2306560 .. 2306578 + -11.7  -5.36965   TGTTCAGTCTGTAAA             GGCCGTC CTTGA GACGGCC             TTTTTTATAGTCTTA 100 51
 CLH39_10570 2307885 .. 2307899 +  -5.6  -3.20723   CAGCCATAGTTGGCG               CCGGCT TGA ATCCGG               TTCAGTTCATCGCCG  51 412
 CLH39_10600 2315155 .. 2315175 + -12.6  -4.55697   TCGATGATTTTGGAG            TGGCGCGA CAAGC TCGCGCCA            TTTGTTTATCGCACT 100 34
 CLH39_10605 2315960 .. 2315988 + -12.6  -5.75342   ACCCGAATAAAAAAA       CCTGAATC-CAGC AAAA GCTGCGATTCAGG        TTTTTTTTCAAGCAC 100 164
 CLH39_10640 2323573 .. 2323593 + -12.5  -3.60098   AGCGTGAAGTAAGCC            CGACCCGCC TTG GGCGGGTGG            TTTACAATCCAGCGT  83 29
 CLH39_10645 NONE
 CLH39_10650 NONE
        ugpC 2326653 .. 2326668 + -11.8  -5.40072   ATACATAATAAAAAA              CCGGCC CGAA GGCCGG               TTTTTTTACGAGCAA 100 73
 CLH39_10690 2334535 .. 2334583 +  -9.6  -3.55071   AAATCGCCCTACTCT TTTTCTACGACCGCCAGCTTTGA GAAA TCAGAGC-GGCGGTCGTCGCGCA TTTAAGCGCCTGTAA  74 40
 CLH39_10695 NONE
 CLH39_10700 2337371 .. 2337402 +  -4.2  -3.28924   GACAGCCACATCAGG      GCACCGGCCAGCAT CAAC ACGCCGGCCACTGC       TTCTCCAAAGGGGTA  50 338
 CLH39_10720 2340734 .. 2340756 +  -3.3  -3.75153   ATTGTGTACATTTCC           CGCGTGGAC AGATC GTCCAACCG           TTTCCATTGAAAAAC  52 494
 CLH39_10760 2350208 .. 2350229 +  -7.9  -5.63504   TTTTTTTCAAGAAAA           CCGTCTTGC TCAG GCCAGGCGG            TTTTTTTGTGGACTT 100 129
 CLH39_10800 2358455 .. 2358468 +  -2.3  -2.78216   CAGTAATGGGCGAGT               GCACC CGGG GGTTC                TAGTTAGTAGAAGTG  39 42
 CLH39_10805 2359910 .. 2359929 + -12.8  -4.35524   TGGAGAACAAAAAAA            CCGCGCCG TAAA TGGCGCGG             TTTTCAATTTAACAA 100 59
 CLH39_10825 2365251 .. 2365277 + -16.6  -3.56972   CCTGATCAGTCTCTG         GCCCTGGCTTCG TCC CGGAGTCAGGGC         TTGCTTTACTCGGAT 100 36
 CLH39_10830 2365790 .. 2365818 + -16.7  -3.49789   GGTGTCCTCGTCTCT        CGCCGCTAAGCGC CAG GTGCCTAGCGGCG        TATCTTTTATGCCTT 100 230
 CLH39_10835 2368103 .. 2368127 + -14.3  -5.71712   AACTCAGGTATATAA          CGCCCCTCC CTTTCCT GGAGGGGCG          TTTTTTTGTGTCCGG 100 55
 CLH39_10840 2369024 .. 2369035 +  -4.4  -3.28791   CAGGCCAGTGTGCGT                CTGA CCAA TCAG                 TTCTAAGGGGCCGCT  50 8
 CLH39_10845 NONE
 CLH39_10850 2373477 .. 2373492 +  -3.2  -4.08692   AGCTTCATGGATACA              GGGG CTGTTACT CCCC               TTTTAGCCCGCGTTC  56 257
 CLH39_10895 2385916 .. 2385927 +  -5.8  -3.35224   ACGCCCAGAAAACCA                CGTG GAAA CACG                 TATTTCGCCCAATCT  53 462
 CLH39_10920 2391582 .. 2391618 + -17.5  -4.12198   ATTTCGGCTCAAAAC    AAAAACCCCGGTTTGTA TGT TGCAAACCGGGGTTTTG    TTTTAAAGGCTTATG 100 55
 CLH39_10940 2395047 .. 2395057 +  -2.4  -2.62184   GGTTGAAAAATCCAA                 CGGC CTG GCCA                 TGCTGTAAGACGCCC  39 7
 CLH39_10945 2396096 .. 2396112 +  -2.1  -2.71483   ATAAACAGGCCCGCA              GCGCGCA CAC TGGCCGC              TGCTTGGAAACCTAT  39 131
 CLH39_10950 2397141 .. 2397175 +  -4.7  -3.41341   GCAAGCCGAATAAAA     CACATGGGCCCCGGC TAGCT GCTGGGGCGCTGGAG     TCTTTCCATGCAATT  52 28
 CLH39_10955 NONE
 CLH39_10960 NONE
 CLH39_10965 2399592 .. 2399610 + -14.6  -4.46854   TTACGCTGATACGTA             TCCAGGCC CAT GGCCTGGA             TTTGTTCTTCAATCA 100 46
 CLH39_10975 NONE
 CLH39_10980 NONE
 CLH39_10985 2405479 .. 2405498 +    -5  -3.60792   TTTTTCCCTACCCCC            GCCCTGCGT TAA AC-TAGGGC            TTTGCCCGTTCAACC  56 46
 CLH39_10990 NONE
 CLH39_10995 2406473 .. 2406503 + -15.7  -3.59315   TACAATAAAGCCCAT       TAAAAAAGCCCGT ATCAA ACGGGCTTTTTTA       TTTCCACCTACTTAA 100 97
 CLH39_11005 NONE
 CLH39_11010 2409868 .. 2409878 +  -3.2  -2.94199   AAACGACTATTGTCA                 CCGA ATT TTGG                 TATGGTTAATGGATG  42 81
 CLH39_11015 2410136 .. 2410149 +  -8.1   -5.0666   AGTAGTTAAGAAAAA               CGGCT CATG AGCCG                TTTATTTTTTGCCTG  93 16
 CLH39_11020 NONE
 CLH39_11025 2412290 .. 2412306 +  -2.2  -2.87051   TGCCCACTTCGGTGG              TGGGCA ATGGC TGCGCA              GTTTCCTGATCGGGA  40 387
 CLH39_11045 NONE
 CLH39_11050 2417576 .. 2417600 + -15.8  -4.49756   CCTTAACGCCATTAA          CACTGCCCTC TTGAT GAGGGCAGTG          TTTTCCTGTTTCGCG 100 115
 CLH39_11060 2419225 .. 2419248 +  -7.4  -3.70902   CAATCTTCTGACGTA          GGGCCGGA CATCAAAC TCCGGCTC           TTTGCCTCTGCCGCC  67 85
 CLH39_11070 2421635 .. 2421646 +  -2.2   -4.2704   CCTGGATGTCCCGGT                GGTT CACC AGCC                 TTTGTTGCTAGTACA  57 413
 CLH39_11075 2424074 .. 2424090 +  -3.7  -4.72029   CACTCTGCTCGGGGC              GACAG CCCCACC CTGTC              TTTTATTAGCTTGAG  68 149
 CLH39_11080 2424718 .. 2424744 +  -5.9  -3.61398   CCCTACTCAGTCTAA        GTGTGGTCA-TG CCCG CACTGTCCACAC         TTCTTGCGCGGAAAG  59 146
 CLH39_11090 2426574 .. 2426588 + -12.8  -4.67353   CTGATCAAATAAAAA               GCCCGC AAT GCGGGC               TTTTTAAATAGCTAG 100 57
 CLH39_11095 2427689 .. 2427712 + -12.4  -2.71924   GACACCATTAAAGAA          GCCAGGAGCC ACCT GGCTCCTGAC           CTTTACAAGCAAATC  74 136
 CLH39_11100 NONE
 CLH39_11105 2428891 .. 2428916 + -16.3  -4.82855   ACACTAATAAAAAAA         GACCTACAGCA ACAA TGCTGTAGGTC          TTTTTAAATTTGGTC 100 85
 CLH39_11110 2430341 .. 2430354 +  -3.7  -3.07622   CCCCTGACAATTACC               GGGTG TGAG CCCCC                TTAAGTCCGGTCTAT  46 114
 CLH39_11115 NONE
 CLH39_11120 NONE
 CLH39_11125 2431359 .. 2431377 +  -2.3  -3.36656   TCCCATCCAGTCATT             CTGTGGC CCAGC GCCATCG             TCTTCTATCCATTTT  46 75
 CLH39_11130 NONE
 CLH39_11135 NONE
 CLH39_11140 NONE
 CLH39_11145 NONE
 CLH39_11150 2436091 .. 2436107 +  -2.9  -2.79684   CGTAAAGGTGAAGAA              ACAGTCG AGC TGACTGG              TCATTAACTTAATCG  41 2
 CLH39_11155 2436586 .. 2436609 + -15.4   -2.7185   CTAGATCCCCCCTTT          GATGGCCAGT TTTT ACTGGCCATC           TCCTTGCGCCGTCCT  84 56
 CLH39_11160 2437335 .. 2437356 +  -3.1  -3.14848   AACAGACCAGCAACT           CCATAACTGG AGA TCA-TTATGG           CTTTTGATGCAAACA  44 20
 CLH39_11165 NONE
 CLH39_11170 NONE
 CLH39_11175 NONE
 CLH39_11180 NONE
 CLH39_11185 NONE
      virB11 NONE
 CLH39_11195 2442757 .. 2442791 + -13.1  -5.06414   CCCTCTGCAACGATT    GACCGCTTCACATGCAC CAT GTGCATG--AAGCGGTC    TTTTTATTGAACAGC 100 56
 CLH39_11200 NONE
 CLH39_11210 NONE
 CLH39_11215 NONE
 CLH39_11220 2446128 .. 2446152 +  -4.9  -3.40175   GCGGCTGCATGCCTT          TGCCTTGGG ATTCAGC CCCTGGGCA          TATCTTTTCAAGGAT  52 43
 CLH39_11225 2447746 .. 2447773 +  -6.2  -2.91728   CCCGCTCAACCCAAA        GCACGGCTGAAGC GTA GCGACAGCC-TGC        TCTAGTCTTGCCAGT  52 9
 CLH39_11230 2451041 .. 2451092 +  -8.6  -3.10715   GGGTGCGTCCTGTGT GAGACCTTAAGGGCCACAAAGAGC GCCA GCTCATTGAGGGACTTTTGGTCTC TTGCCTGGTCCTCAG  62 342
 CLH39_11235 2451879 .. 2451911 + -18.5  -2.88249   GCTACCGACAAAAGG      CACCAAAGGCCAGCC AAG GGTGGGCCTTTGGTG      TATATACCCAATCTG 100 47
 CLH39_11240 2452950 .. 2452966 +  -3.6  -3.74928   TGTCATTTTGGTCTC              CGCCTG CTTCA CATGCG              TTATTGAATTGCTAT  54 212
 CLH39_11245 2455569 .. 2455585 +  -2.1  -4.29325   TAATCACTATTAATA              CGGAGGC GTA GGCTCAG              TTTTGACTATTCCTC  60 38
 CLH39_11265 2462411 .. 2462446 + -10.4  -2.78384   CTCTCGAAAAAAAGT    GGTGAAGCCATCTCGC CGCC GCGAGATGGCTGAACG     TGTCGTGCAGGGGCA  69 327
 CLH39_11335 2477724 .. 2477739 +  -4.6  -3.30124   CCATAAGCCAACCCG              GCGAGC AGTG GCTGGC               TTATCACGCATCGCC  50 320
 CLH39_11390 2500260 .. 2500275 +  -4.6  -2.62933   CCACACAGAACGAAT              CGGCAA ACGC TCGCCG               TGCTGTGCGACCTTA  43 242
 CLH39_11400 2501975 .. 2502013 +  -8.3  -2.69151   ACGCCTTAAGCTTCC  CTG-TGCTGG-CGAGCG TTTAATC TGCTCGACCAGCAACAG  TACTGTCTCAAAAAA  58 112
 CLH39_11450 2513175 .. 2513197 + -10.4  -2.71731   AACTTCTTATGCACC           AGGGGGCAGG CAT CCAGCCCCCG           TGCTTCCAGAGTACG  63 298
 CLH39_11550 2531494 .. 2531520 +  -2.8  -2.83715   GCGTCTTGTCCGAAC         ATGGGCGGAAAG GTA TTGGCCGCCCAC         TGTCCTAATCGTGCC  41 245
 CLH39_11560 2532955 .. 2532971 +  -9.4  -4.50976   AACGCTAATATAAAA              GCCAGC AAATA GCTGGC              TTTTATGATCTGGCA  86 33
 CLH39_11600 2538759 .. 2538771 +  -3.3  -3.35597   GATAAAAACTTAAAG                GACTG CAG CAGGC                TCTTTAGCACCTGAC  47 443
 CLH39_11605 NONE
 CLH39_11610 NONE
 CLH39_11615 2542284 .. 2542340 +  -7.8  -3.21276   TGACTTAATCGTCCA GCTGTGTGGAGGC-ACGGGCCCGAAGC TCCG GCTTTGGGCCCAAAGCCGACAGGCGGC TCTTATCACCCGACA  61 33
 CLH39_11660 2551512 .. 2551524 +  -4.8  -3.61398   ACAAGGCCCTGCAAA                GCGT CGTTA ACGC                TTCTTGCAAGGCCAG  54 150
 CLH39_11695 2558584 .. 2558605 +  -8.7   -5.5112   AGCAAGCAGAGAAAT           CAAGGAGCC TTAC GGCTCCTTA            TTTTTTATTAATCAA 100 332
 CLH39_11700 2558990 .. 2559000 +    -4  -4.07885   GATATGAGCCGTCCT                 GAAA AGG TTTC                 TTTTAAGGACGGCTC  59 45
 CLH39_11705 2559633 .. 2559650 +  -5.5   -2.6914   TGGCCTGATTTCCCC             CACCCAT TACA ATGGGGG              CTTATCTAAGGAGTC  47 94
 CLH39_11710 2559988 .. 2560013 +  -6.2   -5.8187   CATCGCCCATAAAAA        GCCCGCCCATGT TTCA ACA--GGCGGGC         TTTTTTTATTACATA 100 73
 CLH39_11750 2565839 .. 2565859 +  -6.1  -5.84381   TGACGAGGTCTTTAG            GCTCCCT TTTCGCT GGGGAGC            TTTTTTTATTCATAA 100 98
 CLH39_11760 2567103 .. 2567116 +  -8.1  -5.24129   CGAACACACAAAAAA               GCCTC TACC GAGGC                TTTTTTGTCGACCAA 100 59
 CLH39_11765 2567545 .. 2567569 + -11.5  -4.63218   TAGAAAACAAGAAAA          GCCCCAAAG CGTTGAT CTTTGGGGC          TTTTCTTGGCACAGC 100 66
 CLH39_11775 2570299 .. 2570309 +  -2.4  -3.84406   ATTCAGCCTGGGCCT                 GGTC GTA GCCC                 TTCTTGTGCTGGGAA  53 414
 CLH39_11915 2596587 .. 2596597 +  -4.6  -3.40299   GTACCCGAAAAGGTT                 GCGG TGG TCGC                 TTATCCATCTCATCA  52 223
 CLH39_11920 2597344 .. 2597370 +  -8.7  -2.63089   CGGCCAAAAAGTAAA        GCCCGCTCAATC TTTC GACTG-GCGGGC         CTGTTTCAAATCCTA  61 27
 CLH39_11970 2602263 .. 2602287 + -10.1  -4.90266   ATGAATTAATTATAA          GCATTGCTTCT AAT ACAAGCAATGC          TTTTTGATTCATAGA 100 306
 CLH39_11980 2603104 .. 2603119 + -10.4  -4.61482   AGCAGGAAGAGACAA              GGAGCC GTTT GGCTCC               TTATTTTTTAACCAC 100 84
 CLH39_11985 2604648 .. 2604663 +  -7.5  -5.45652   AGCCTATACGACAAA              GCCCC TCACAC GGGGC               TTTTTTGTTGGGCGT 100 524
 CLH39_12000 2606511 .. 2606521 +  -5.4  -3.55444   AGAAAAACTGCGTCT                 CATG AAG CATG                 TTTCAGACGTGCGGG  56 141
 CLH39_12005 NONE
 CLH39_12010 NONE
 CLH39_12015 2607920 .. 2607935 +    -9  -5.40072   CTACTCATTGCCATA              GCAGTC TGCG GACTGC               TTTTTTTCGGCCCGA 100 243
 CLH39_12020 NONE
 CLH39_12025 NONE
 CLH39_12030 NONE
 CLH39_12035 2611090 .. 2611100 +  -8.2  -3.09492   TCGCTCCACTGTTAG                 CGCG CAA CGCG                 TATTGCACTTGAGCA  62 3
 CLH39_12045 2613296 .. 2613309 +  -2.4  -4.40561   GTGCCACTAGTTTGA               GTTC ATTCCA GAAC                TTCTTTTTCCGAGAC  62 512
 CLH39_12055 2615105 .. 2615135 +  -4.7  -3.64933   ACAGCAACAAACCCC      TGCCCCGCCTTCGA CACA TCAAAC-CGGGGCA       ATTTTTTACCCTTCG  54 53
 CLH39_12060 2615908 .. 2615921 +  -3.7  -4.63928   TTTTGAAGTTTGAAT               GCCCG CGCA CGAGC                TTTTTGAAGTGATGT  68 306
 CLH39_12065 NONE
 CLH39_12070 2617806 .. 2617830 + -11.5  -4.63218   CTGGGCAACAAAAAA          GCCCCAAAG CATTGAT CTTTGGGGC          TTTTCTTGGCACAGC 100 120
 CLH39_12080 2618848 .. 2618872 + -10.8   -5.4833   AACCTCTCCCGGAAA         GCCTTCACTGC TGAT GC-GTGAAGGC          TTTTTTGTTGGCTAC 100 53
 CLH39_12085 2620889 .. 2620910 + -10.1  -2.73124   CTACCATGCACGGTT           TGTAGGGCC GCCC GGCCCTGCG            CTTTCGGGAGTCGAA  65 67
 CLH39_12090 2622013 .. 2622026 +  -3.7  -5.65927   GCCCAGGCTTCCAAG               GCGGG GCAC CCCTC                TTTTTTCTTTCCCTA  88 62
 CLH39_12095 NONE
        nadB NONE
 CLH39_12105 NONE
 CLH39_12110 NONE
 CLH39_12115 2629621 .. 2629655 + -12.1  -4.11394   AGACGCTTCGTCTTT    GAATCGG-GTGGCGGC CCCT GCCGCCACCCCGCCTC     TTTTCCGCCTGGAAT  90 40
 CLH39_12120 NONE
 CLH39_12125 2632525 .. 2632551 + -13.7  -3.63895   GATCCCCAGCCCAAA         CCGGGAGTTGC CCCCA GCGGCTCCCGG         TTTACCCTGATTGCA  86 39
 CLH39_12130 2634217 .. 2634255 +  -9.6   -3.9122   ATACAGATAGGTATA  GTCATAGGCCCGACGCT CCCCAA AGAGCCGGGCC-ATGAC   TTGTTTGACGGACTC  78 57
 CLH39_12150 2639808 .. 2639825 +  -8.4  -3.06915   ATCCCAAAAAGGAAT             GCCCTG CTTTTT CAGGGC              TTGCATCAGATCGAT  62 358
 CLH39_12160 NONE
 CLH39_12165 2642111 .. 2642135 + -15.8  -5.56264   GCAACCATAAAAAAA          CATACCCGGC TATTC GCCGGGTATG          TTTTTTGTGTTTCAG 100 106
 CLH39_12180 2645834 .. 2645852 +  -3.2  -3.38768   TTATTCGGCCTTTAA             GATATATT TAA AATACATC             TTATAACTGATCTGC  47 70
 CLH39_12185 2647102 .. 2647128 + -19.6  -3.34522   TATTTTCTGCCTGAC         CGTGCCTGCTTA TAC TAAGCAGGCACG         TTGCTTGCACCCTCT 100 95
 CLH39_12190 2649319 .. 2649339 +  -3.2   -3.5485   CAATCGCCCGCTAAC           GGCTGCCGG CTTA TCGGT-GCC            TTACTCTTTTAGCTA  49 222
 CLH39_12195 2650827 .. 2650852 + -14.1   -5.4833   ACAAGCTGATATCAA         GGCTGAAAGCT CCCG GGCTTTCAGCC          TTTTTTCTTGCCTGG 100 51
 CLH39_12200 2651597 .. 2651619 +   -12  -3.86346   TAGTTTCATTCTGTC           CCCCAGGC GCCACCG GCCTGGGG           TTTATCGAGGAGTGC  86 38
 CLH39_12205 2652335 .. 2652352 +  -8.4  -4.35524   CGCCTTTCCAAGCAA             CCCTCC ACTTTC GGAGGG              TTTTGGCTTTAGGGG  79 111
 CLH39_12275 NONE
 CLH39_12280 NONE
 CLH39_12285 2668361 .. 2668376 +  -6.8  -3.35996   CTAGCGCGGCCCATC              GCAGCT TGAT GGCTGC               TTATGCCTCGACCTC  60 204
 CLH39_12295 2671192 .. 2671228 +  -7.4  -3.03012   CTCGACGACAAGGAT   GTCTGGCAGATTGGAGT AACT ACTT-AGTCTGCCAGCC    TGCTTTCTGGCTGAT  59 48
 CLH39_12320 NONE
 CLH39_12325 2673797 .. 2673829 + -11.4  -4.62069   ATCGTCAAATGCAAA     GCAGGCCACAAC-CA TTTC TGTGTTTTGGCCTGC      TTTTTGCAATACAAA 100 49
 CLH39_12385 2687133 .. 2687144 +  -4.4  -2.51464   GCAGCGGATTTCCGG                TCCT GCAT AGGA                 ATTGCTCCGTCCTGC  44 162
 CLH39_12390 2690515 .. 2690536 +  -7.3  -5.13741   TTAATCGGTTTTTTT           GGTCGTTTT CGTA AAAACGCCC            TTTTTCTTCACTTAA  91 42
 CLH39_12395 2691479 .. 2691499 + -11.2  -3.01726   TGCCATAAGAAAAAA            GGGATCGA CACGC TCGATCCC            CTTTCTCTCCGGACC  73 66
 CLH39_12400 2693313 .. 2693333 + -10.4  -4.18644   GAGACTATATGAACT            TGCGGGGC AGACC GCCCTGCA            TTTGCTTTGTCTGCT  88 297
 CLH39_12405 NONE
 CLH39_12410 2694767 .. 2694787 +  -6.7  -5.43414   CCTGAGCTGACCAAA            GCCGCCCAC TAT GTTCGCGGC            TTTTTTATGTGTCAT 100 52
 CLH39_12415 NONE
 CLH39_12420 2695859 .. 2695872 +  -8.1  -4.68607   TCGCTTGATGTGTTC               CCGTC CTTT GACGG                TTTCTCTTTTTTATC  86 33
 CLH39_12425 2696447 .. 2696459 +  -2.6  -3.57263   AGCCTTAAACACCCA                GGCG GCTGA TGCC                TTTGGGCATCAGCCT  47 33
 CLH39_12430 2698412 .. 2698422 +  -2.4  -3.21099   AGCCCCCAACCGCGA                 TGCG GCC CGCC                 TTCATCCTCGACCCA  44 328
 CLH39_12440 NONE
 CLH39_12445 2700232 .. 2700250 + -11.7  -4.82901   AAATATCCAAAACTT             GCTGGGG CTTTA CCCCAGC             TTTTTCTGACAAACC 100 76
 CLH39_12455 2702215 .. 2702231 +  -5.1   -4.7497   CACGGGATAAAAAAG              GCAGG AAGGGCC CCTGC              TTTTTCGTGACTGAC  76 31
 CLH39_12480 NONE
 CLH39_12485 2706625 .. 2706639 +  -4.2  -3.85296   ATTCCGTATCGTCCG               TGCTGG CTT CCAGAA               TCTTTTGCTTGTAGA  57 325
 CLH39_12500 NONE
 CLH39_12505 2709374 .. 2709391 +  -4.8   -3.9279   CACCAGGATCGGCAA             GTAGGC GCTTAA GCCTGC              TTTATACAGTTGCGT  59 170
 CLH39_12535 NONE
        thiD 2716995 .. 2717005 +  -6.8  -3.05384   ACGACCAAAGTCACC                 CGCA AGC TGCG                 TTCCATCAGCCAGCC  54 479
 CLH39_12550 NONE
 CLH39_12555 NONE
 CLH39_12560 2721337 .. 2721347 +  -5.4  -2.56601   GCCCTCTCCTGCTCC                 GCTA AGC TAGC                 CTCATTTTTAATCGC  47 94
 CLH39_12565 NONE
 CLH39_12570 2723443 .. 2723460 + -12.7  -4.19735   CATTAACCAAAAAAA             CCGGGCA TAAC TGCCCGG              TTTACTTTTAAAAAC 100 91
 CLH39_12580 2726843 .. 2726858 +  -6.1  -3.35867   TCCACAAAAAACAAA              GCCAC AGACTA GTGGC               TTCGTTCAGGCTTCA  57 14
 CLH39_12590 2729965 .. 2729977 +  -4.7  -3.25823   CTGTATGGTTTTTTC                CAGGG CTT CCCGG                TTCATGTAACCCAGC  49 417
 CLH39_12635 2736488 .. 2736508 +  -9.7  -2.60075   TTAAGAGTCTGCACA            GCAGCGTAA GAC TGACGCTGC            ATTACTTGCAAAGCC  65 17
 CLH39_12665 NONE
 CLH39_12670 2745435 .. 2745445 +  -8.2  -3.68366   GGGCAAAGATCTCTT                 CGCC TTT GGCG                 TTCGTTTTCGGCTGC  70 220
 CLH39_12690 2750981 .. 2750995 +    -7  -3.58037   TGCTGGTGGCAAGCC               CAGGGC TAC GCCCAG               TTTGCGCACTTCGTC  60 414
 CLH39_12700 2753282 .. 2753292 +  -6.8  -3.21395   CATATGCGCTTTGAC                 TGGC ATA GCCA                 TGTTGTAAAGCCACT  56 117
 CLH39_12710 2755159 .. 2755181 + -12.7  -5.38549   AGTATCCAAAGCAAG           GCGTCCCGT CATAA ACGGGGCGC           TTTTTATTATTTAGA 100 200
 CLH39_12760 2770625 .. 2770635 +  -2.4  -2.78384   TAACTGGAGTCAGTG                 GTGG TCA CCCC                 TATCCTGAAAAACCG  39 7
        recJ 2772527 .. 2772537 +  -6.8  -3.06037   CTTAGCCTGCCAGGG                 TGCC TGG GGCA                 TATCTCGTTTGAGCT  56 203
 CLH39_12800 2789264 .. 2789283 + -11.4  -5.47218   CCACAAAGTAAAAAG            GGACGCTC TACC GGGCGTCC             TTTTTTTGCATCCAG 100 77
 CLH39_12810 2791262 .. 2791303 +  -2.1  -2.53271   GATAGGCGCGCCTGA CAGGGGTGCGACAAGAGC CATCAGC GCTCGGG-CGCACCCCAC ATCTTGTGGGAGTCG  38 78
 CLH39_12815 2793229 .. 2793246 +  -5.6  -3.58343   AGGTATCTTTGACTA             CGATGA CAAAGC TCATCG              TTTGCACGTAGTCAA  56 224
 CLH39_12825 NONE
        lysS 2796541 .. 2796560 +   -15  -5.64274   CTCAAGACAGAAAAA            CGCGCGGT CTTG ACCGCGCG             TTTTTTTATGCATCC 100 46
 CLH39_12875 2805603 .. 2805628 + -17.7  -2.71681   CCCTCAGTACAGCCC         CAACGCCCTTC TTCG GAAGGGCGTTG          TCGTTCCAGCCCTTG 100 46
 CLH39_12880 NONE
 CLH39_12885 2807041 .. 2807066 +  -9.7   -5.5112   GCTGACAAGAGAAAA         CCCCGTATACC GTTT GGTACATGGGG          TTTTTTATTGGTCGA 100 87
 CLH39_12910 2814805 .. 2814826 +  -8.7  -2.88216   GTACAAAAGAACCTG           GGGGCCA GTACAAGA TGGCCCC            TAATCTATTTGTTTT  63 50
 CLH39_12915 2815440 .. 2815488 +  -3.9  -4.46212   GACTGCTGAGAAAAA GCAC-GTGC-CGGGGGGGG CAGAATCGCAAGA CCCCCGCTGGGCACTGTGC TTTTCTCCTGAACAC  66 477
        soxR 2818697 .. 2818739 +  -4.7  -4.15044   GCAAGGCTGTCAGCA CCCCTTGCACGGCAGAC ACCAGCCCA GTCAGGCGGGCAATGGG TTTATTCAGCACCAG  64 233
 CLH39_12945 2821531 .. 2821543 +  -4.8  -3.69395   GCCTGCCAATGTACC                CAGG ATCGC CCTG                TTGTTGCGTCATACA  56 181
 CLH39_12960 2823601 .. 2823612 +  -5.8  -3.29947   CTCGGGTGATGCAAG                CCTG TAAT CAGG                 TTCCTCTCGTCCCTG  55 19
 CLH39_12975 2827591 .. 2827604 +  -4.5  -3.96387   ACGAGCTTGCTGCTC               CAGCT TGTC GGCTG                TTTCCTTGGCTTGCT  62 290
 CLH39_12985 2829157 .. 2829169 +  -9.1    -2.752   CTGCGGTGGTAAACC                GCGCA TCA TGCGC                CTTCTGTATCCCGAT  62 370
        dapD NONE
 CLH39_12995 NONE
 CLH39_13000 2832074 .. 2832089 +  -3.9  -2.94099   AGATTCTCTTGTTAA              GCCGG GAGCAA CTGGC               TCTGTGATACGCGCA  45 3
 CLH39_13005 2834060 .. 2834086 + -11.7  -5.06816   ACTCCTGAGAAAAAA        GGCGCCATATCT ACAA AGAT-TGGCGCC         TTTTTGTTGGAAGCT 100 67
 CLH39_13015 2836356 .. 2836389 + -17.5  -4.62471   TTCATAAAAGCAAAA     GGGACTGAGCTTGCC GTTA GGCAGTCTCAGTCCC      TTTTTAAACCTTAAA 100 63
 CLH39_13035 NONE
 CLH39_13040 NONE
 CLH39_13045 2842801 .. 2842823 + -16.4  -3.76492   ATGGTTTGTGCAAAA           GAAGGCATGG CGC CCATGCCTTC           TTTCATGACCTTCAG 100 122
 CLH39_13080 NONE
 CLH39_13085 NONE
 CLH39_13090 2854796 .. 2854806 +  -3.2  -2.90723   CTCCTGAGTCTGTAA                 GGAT CAT GTCC                 TATGCTTAGCAATAA  42 34
       coaBC 2856016 .. 2856044 +  -5.3  -5.76949   CTCTTTTATGATGAC       G-GGCAGCGC TAAAGCAGGT GCGCTGCCTC        TTTTTTTTCAGGATA 100 49
 CLH39_13100 2856542 .. 2856588 +  -8.8  -3.58522   AGCTTTAAAGCTGGA GAAGGACGCGATGCGAAATGC CTTGTC GCAGTCAGCATCGC-TCCTTC TTTAGCCCTGATGCT  70 40
 CLH39_13105 2858118 .. 2858130 +  -4.7  -2.86338   GCTTCTGAATGAAGG                CCAGC ATG GCCGG                GTTGTTGATCTCGCT  44 484
 CLH39_13120 2862265 .. 2862278 +  -8.1  -4.88222   ACTCTTGCACCCAAG               CCCTC TTCT GAGGG                TTTTTGACTTTTCAT  87 211
 CLH39_13125 2863089 .. 2863104 + -10.4  -5.49809   TCAATACTTGAAAAA              CCGCCT CTCT AGGCGG               TTTTTTTGCGGTTTG 100 51
 CLH39_13190 NONE
 CLH39_13195 NONE
         bfr 2884460 .. 2884480 +    -9   -5.7946   GACGCCATAAAAAAA           CCGCCA-GC ATGC GCATGGCGG            TTTTTTTATTGCCGG 100 92
 CLH39_13225 2887524 .. 2887538 +  -5.6  -2.81966   CGCTGGATCGTCTGT               TGGCTC AGA GGGCCG               TCTGATGCGCTTTCG  48 6
 CLH39_13230 NONE
 CLH39_13235 NONE
 CLH39_13240 NONE
 CLH39_13245 2890062 .. 2890073 +  -4.4  -3.15861   ATCGGATCGACGCAT                TTCC TGGA GGAA                 TTCATGCGACTCATA  48 113
 CLH39_13250 2890747 .. 2890771 +   -15  -4.30719   AAGTAAGTCAAGATT          CAGCCGGCCC CAAAA GGGCCGGTTG          TTTATTATCCAAGGG 100 39
 CLH39_13255 NONE
        mviN NONE
 CLH39_13265 2893509 .. 2893525 + -13.7   -5.4505   AAACCAGTTAGAAAG              GGGGTGC TTA GCACCCC              TTTTTTATTAGCCAC 100 81
 CLH39_13270 2894560 .. 2894586 + -10.9  -3.68073   CCGTGTAAAAAACAA        GTCGCCTACCGT TTTA GCGGT-GGCGAC         TTATTGAATGAGCTG  80 33
        argF 2896158 .. 2896176 + -13.2   -4.7254   TCAATGACATAAAAA             GGGGATAC GTC GTATCCCC             TTTTTAATACCGGAT 100 67
 CLH39_13320 2906437 .. 2906458 +  -5.1  -2.89602   CCCCTTGTTCACCAC           GGGC-GCATC CAG GATGAAGCCC           CTTTCCTCTGCGGGA  49 9
 CLH39_13325 NONE
 CLH39_13330 2908373 .. 2908386 +  -4.5  -3.90744   CCGGCGTCTGGTCCG               CGATC CCTC GGTCG                TTATTTGAGGGCACC  59 4
 CLH39_13335 NONE
 CLH39_13340 NONE
 CLH39_13345 2911274 .. 2911307 +   -14  -4.32034   ATCCCATAAAAAAAA     CACCCCAATATCGG ATTCAA CCAATATTGGGGTG      TTTTGATACTGCTGC 100 182
 CLH39_13355 NONE
 CLH39_13360 NONE
 CLH39_13365 2914445 .. 2914460 + -11.8  -4.67607   CTATTTGCCCGACCA              GCCCGC AACG GCGGGC               TTTCTTTATTGAGCG 100 145
 CLH39_13370 2915305 .. 2915325 +  -8.9  -2.57132   CAATGCCGGATGCAA            CACCTGCTG AAC CTGCGGGTG            ATTCTCCAGAAAACG  57 374
 CLH39_13380 2916822 .. 2916836 +  -4.2  -3.75153   CAGCGTCTGGCCGAT               ACTCAG TCT CTGAGG               TTTGGATTCAACCAG  54 80
 CLH39_13390 2918482 .. 2918517 + -10.7  -4.05788   GGCTTTGCCTGCCAA    TTAATACGGGGAA CCCAACCCAA TTCCCCGTATTAA     TTTCATTTACAAACA  84 41
 CLH39_13395 2920180 .. 2920198 +  -5.2  -3.66178   CGTCAGTTTACGGCT             CGCCCTTG TGC CAAGCGTG             TTTGACCTTGCCACA  59 109
 CLH39_13400 2921083 .. 2921105 +  -7.1  -3.16881   CCTATCTGGTCAAGG          CCTTGAAGGT CTAA ACCT-CAAGG           TTCGTAAAATCCCTA  56 12
 CLH39_13405 2921495 .. 2921511 + -13.7  -4.67353   AAGGAAAACAGAAAA              CGCGGCT TTA AGCCGCG              TTTTTCCATACCTGC 100 70
 CLH39_13415 2923609 .. 2923648 +  -2.1  -4.70511   TTACCCCAAGCTTGA  TCGGAAGTGGGACCGTTC CACCA GAACACCCCCACT-CTGA  TTGTTTTATTTTTCA  65 26
 CLH39_13420 2924583 .. 2924620 + -17.9  -4.41348   GACGACCTGATCACA   TAGCCCCAAGGTTGGAG TTGA TTCCGACTTTGGGGCTA    TTTATTTCAGGAACA 100 77
 CLH39_13435 2926549 .. 2926584 +  -4.6  -2.70932   GCGTTTGCATCCAGC    GCATGTC-CGGCTCGGG CAG CCTGAGCGGCGACACGA    TCATTGGCGGCGGCG  44 218
 CLH39_13535 2946755 .. 2946765 +  -8.2  -3.35679   TGCGAGCCATAGTCA                 GGGC CAT GCCC                 TTGTCCATCAGAGAC  61 189
 CLH39_13545 NONE
 CLH39_13550 NONE
 CLH39_13555 2948046 .. 2948068 +  -2.6  -4.62069   TAAGGGGGCAGCCTG           CGGTACTTGC TTA GCAATTGCCC           TTTTTAGCCTGGCCG  65 38
 CLH39_13565 2948540 .. 2948572 +    -7  -3.55622   CGTTTGGCTTGCACC      CAGCAACAAACCTG AAGCC CGGGCTTCTTGCTG      TTTGAGCAAGTTACC  62 107
 CLH39_13575 2950160 .. 2950181 + -15.1  -6.06723   ATCGCATGCCGCTAA           CCCGTCCGC TTTT GCGGGCGGG            TTTTTTTTTGGGGGG 100 59
 CLH39_13580 NONE
 CLH39_13585 NONE
 CLH39_13590 NONE
 CLH39_13595 2952230 .. 2952240 +  -3.2  -4.28548   TGTTCTCCAAATCTG                 TCGG CCA CTGA                 TTTTAGTGAATAAAT  61 15
 CLH39_13600 2953075 .. 2953096 +  -3.7  -4.01047   AGATCTGCATTTTTG           GGTCAAC-GA TAT TCTGATGACC           TTGTTCTTCCTGGTT  59 386
        mgtE 2956936 .. 2956962 +  -2.2  -3.86283   CACCGTTACATTCCC         TCTGGCAGGC AGGGGGA GCCTGACACA         TTTCGTCTAACTTGG  53 114
 CLH39_13620 NONE
 CLH39_13625 2961034 .. 2961044 +  -8.2  -3.67611   GTCCCGCGCTCCTCA                 GCCC TGC GGGC                 TTGTCTTACAATGAC  70 74
 CLH39_13630 2961644 .. 2961666 +  -9.8  -2.67803   AGGCGGCGCTGTGCA           GCTGGGCCTG AAT CAGATCCAGC           TCGGTTTCATGGCAA  65 52
 CLH39_13695 2977460 .. 2977482 +  -5.5  -3.94471   TACGATAGAAAGAAC          CGGCC-TTGG CAAA CCACTGGCCG           TCTTTCTTTTCCACT  61 96
        acnA 2982425 .. 2982446 +   -13  -4.08557   GTTAGCGGTATCAAA           CGCCAGGG GTCACA CCCTGGCG            TTCTTGTTTAACCAG  91 65
 CLH39_13730 NONE
 CLH39_13735 2988229 .. 2988249 +  -2.4  -2.85861   GTTTCCTGACCAGCC            TCGGCTGC CCGGC GCAGCCAC            CTTATGTTGTCAATT  39 32
 CLH39_13740 NONE
 CLH39_13745 2989596 .. 2989618 + -19.2  -3.50335   CCAGAGCGGCCCATA           GGCCCTACCG CAA CGGTAGGGCC           TTCGTGTTTCTGCAG 100 225
 CLH39_13750 2990369 .. 2990399 + -19.9  -4.43815   ATCACTCCGAAAAAA       TGCCCGACCAGAA TCTGC TTCTGGTCGGGCA       TTTTGCTATCTTGAT 100 102
 CLH39_13780 NONE
 CLH39_13785 NONE
 CLH39_13790 NONE
 CLH39_13795 3001533 .. 3001552 + -10.7  -3.46602   GAGCAAAAATAAAAA            GGGAGCC ATGCAA GGCTCCC             TTCTCATGTAGCAAC  75 75
 CLH39_13805 NONE
 CLH39_13810 3004482 .. 3004495 +  -3.8  -3.39803   CATGATTCTCATTCC               GGTG ATTGAG CACC                TTGTGCGTCTAGGTA  50 74
 CLH39_13815 3007019 .. 3007048 +   -15  -2.64735   TGACTAAGTGCAGCG       GCAGGCCGCGTC TTTCTT GACTCGGCCTGC        TGCTCTGAGTACCGT  83 90
 CLH39_13820 3008094 .. 3008111 +  -7.7  -4.12603   AAAGACAATCCTTAT             GCGGCAA CTGA TTGCTGC              TTATTGTTTACTGAG  74 351
 CLH39_13825 3008940 .. 3008970 + -15.5   -2.9155   AAGCCCAAAACAAAA       CCGCCTCAGTTCC CAAAA GAAACTGAGGCGG       TCTCATCTTCAAACA  90 0
 CLH39_13850 3014076 .. 3014097 +  -2.2  -2.60813   GCGGGGCCTGGGCTA           CAAACTGG GGCCTG CCGGTTAG            GTATTTCACACCATG  39 4
 CLH39_13855 3015486 .. 3015510 + -13.6  -4.78848   CACGCAATAAAAAAA         GGCCGGAGCCC ATCA GGG-TCCGGCC          TTTTCTGTTTGACGC 100 49
 CLH39_13865 NONE
 CLH39_13870 NONE
        soxZ 3018368 .. 3018392 + -13.6  -3.16668   CCCTGACCTGCCCCA          TTCAGCGCCC TTAGC GGGCGCTGAG          TTCATAACAGTGTTC  81 65
 CLH39_13880 NONE
 CLH39_13885 NONE
 CLH39_13890 3021217 .. 3021265 +    -8  -3.01712   AGGGCTTGATTGACG GTGCTTCAGAGTGGCCCAGGCG AGCTC CGCCTGACATTCGCTGAAGCAC TCTTACCGAGCCCAC  60 56
 CLH39_13895 3021941 .. 3021955 +    -5  -2.71731   GCCCCTGATTAATCA               TTACGT TTA GCGTAA               TCATTCACCCATAAG  48 199
 CLH39_13900 3023442 .. 3023468 + -13.7  -4.73388   AGCAGAAATCCAGCT         GGCCCCGGC ACTTTGCTA GCCGGGGCC         TTTTTGATGGGGATT 100 53
 CLH39_13905 NONE
 CLH39_13910 3025928 .. 3025947 +  -6.4  -2.78216   TGAGCGTTCTGTTGA            TGCCAGCA GGAG TGCTGCCA             TGATTAATACCAGTC  51 3
 CLH39_13915 3026983 .. 3027003 +  -2.5   -5.5112   AATTCAAGCTTTGGT            GGGCC ACTCAAATTCC GGCCC            TTTTTTATTCCTGGG  80 96
 CLH39_13925 3028344 .. 3028399 + -22.9  -2.89797   CTGCTGGCAGGACCC TTGAGCCGCATTGGCTTGAATCGAGC ATATG GCCCG-TTCAAGACAATGCGGCTCAA TGCTATTTATGGAAC 100 54
 CLH39_13930 3028958 .. 3028976 +  -8.8  -2.79796   GAAGGCGATATGAGC             TGCCCGGT TCC ACCGGCCA             TGTAATGACATGCCC  62 2
 CLH39_13940 NONE
 CLH39_13945 3031417 .. 3031442 + -13.4  -4.54727   TTCTTCTTACAAAAA         CGGCAGACAT GGTTTG ATGTCTGCCG          TTTTCCTTTACAGGG 100 56
 CLH39_13955 3034717 .. 3034734 + -12.7  -5.19212   GCCCGGCAGCAAAAA             GCCACCC AAAC GGGTGGC              TTTTTTCATGCTCAT 100 183
 CLH39_13960 NONE
 CLH39_13965 NONE
 CLH39_13970 3037900 .. 3037923 + -15.4  -5.24129   CCCATGAGCTTAAAA          GCGATAGTGG TCCG CCACTATCGC           TTTTTTATGCGCCCC 100 52
 CLH39_14010 3045908 .. 3045924 +  -7.3  -3.05463   ACACTAAATAAGGGT              CTTATGG GAT CCATGAG              TTCAATCCAGCAGCT  59 93
 CLH39_14030 3049552 .. 3049583 +   -16  -4.23674   TCTGAAAAAACAATA      AAAAACGGCCCACA TTCC TGTGGGCCGTTTTC       TTTATCTTGGTGGCG 100 131
 CLH39_14040 3051102 .. 3051115 +  -5.9  -2.60194   CAAGCACGAATTTAT               GGCTG TTGC CGGCC                CTTGCTTGCAAGGCT  50 492
 CLH39_14045 3053656 .. 3053671 +  -6.1  -4.94811   TCTTGATACCTCCAC              GGCAG CCATGT CTGCC               TTTGTTTGTTTTTGC  81 267
 CLH39_14060 3055570 .. 3055584 +  -7.1  -3.53343   TGTTAATTGACTGAC               GTCCG TGATC CGGAC               TTTCCACAGGAACTT  62 395
 CLH39_14070 3057033 .. 3057051 +   -16  -4.72986   TTATCAGTGCATCGA             GCCAGCCC ATT GGGCTGGC             TTTTTAGTCCACATG 100 50
 CLH39_14080 3061114 .. 3061125 +    -3  -3.29263   GCTAGGATTTGGATC                TATG GCCG CATA                 TTCTCAAGGCCCTCT  46 257
 CLH39_14085 3061858 .. 3061869 +  -3.6  -4.56597   CGATTGCATGGCCGG                GTCC GTCA GGGC                 TTTTTGCACGACGCG  70 456
 CLH39_14105 3066893 .. 3066919 +  -8.1  -2.72661   TAGACAAAACAATAA        TTCCGGG-ATCG GTTT TGATACCCGGAA         TACTTGAAAATAATA  54 94
 CLH39_14115 3068856 .. 3068878 +  -5.5  -4.07568   CGGATTCAGCCCACT           CGGGTCAGA AATGC TCTGCCCTG           TTTTCCAAGCACGGC  63 115
 CLH39_14180 3089858 .. 3089891 + -11.8  -5.26316   TTTTATTAAGTTTTT    GCAATGCGGGGCCGTC AATA GATGGCCCCGC--TGC     TTTTTTATACCGTGC 100 82
 CLH39_14185 3091805 .. 3091826 + -13.7  -5.21709   AATGCACGACAAAAA           GCCAGCCCG TTAA TGGGCTGGC            TTTTTTACTCTCACG 100 84
 CLH39_14195 3093452 .. 3093465 +  -6.7  -2.71712   CTGGCATCGAAACTT               CCCAT TGAC ATGGG                CTTTGCGCGCGACAC  53 49
 CLH39_14200 NONE
        fliS 3095363 .. 3095376 +  -3.1  -3.16564   TGACTCCGGGGCTCG               CAGGA CAGG TTCTG                TTCCTGACCTGCACC  44 38
 CLH39_14210 NONE
 CLH39_14215 NONE
 CLH39_14220 3097373 .. 3097392 +  -4.2  -4.67234   TGAGCCTGCTGTTTA            TAAGGGCT GAAA AGCCCCTG             TTTTTGGGCTTAGAT  70 38
 CLH39_14225 NONE
 CLH39_14230 NONE
 CLH39_14235 3100676 .. 3100711 +    -6  -3.75766   CGAATATGTCTAAGA    CGGCCTCGTTTGGGCAG CTC CTGCCCGTCCAAG-CCG    TTATTCGCTTGTGCC  62 28
 CLH39_14240 3101500 .. 3101510 +  -2.4  -3.09018   TCTTCGGAGCCCTGA                 TGGC AAC GCCC                 CTTTTGGCCTCCTCC  42 26
        fliI NONE
 CLH39_14250 3103658 .. 3103678 +  -3.2  -3.14132   GTGGCCGAACAGGCT           GGTG-CCAG CGAG CTGGACCCC            TTGATCAAAGACCCG  44 290
 CLH39_14255 3104858 .. 3104884 +  -5.1  -4.31166   ACAATAGCTCAGGCA        TGCA-GTCAGGC TCAG GCCCGACATGCG         TTTGTCTGTTTGTAA  69 131
 CLH39_14260 NONE
        fliM NONE
 CLH39_14270 NONE
        fliO NONE
        fliP NONE
        fliQ 3108371 .. 3108383 +  -3.3  -2.52896   ACGCAAATCCGTGAC                GGGCA AAG TGCCA                TGCCTTGCCCACTGA  40 75
        fliR 3109243 .. 3109270 +  -2.6   -4.8622   GCGATTGCATCAAGC        GCCGAGCCTGGCC TAT GGTCAGGAT-GCC        TTTTTGCTTGGCGCG  70 66
 CLH39_14375 NONE
        flgM NONE
 CLH39_14385 3127811 .. 3127828 + -10.5  -4.75308   GACAGACATAAAAAA             GCCTGCC ACAC GGCGGGC              TTTTTCAATCTTGCT 100 63
 CLH39_14460 3145329 .. 3145349 +   -14  -4.45738   GCGCAGACAGCAAAA            GGGCCCGT AATGA ACGGGCCC            TTTCTTATTGCCATA 100 111
        glpK 3148636 .. 3148652 +    -8  -3.68936   AGTTGGGAACAAGCC              GTGCGT CAGGC ACGCAC              TTATTGAACTTGCTG  70 2
 CLH39_14475 3149160 .. 3149176 +  -9.4  -5.64274   CGACTGCTCACCCAA              GCCCCA CTTGC TGGGGC              TTTTTTTATGGCTGA 100 46
 CLH39_14480 3151239 .. 3151249 +  -3.2  -3.63627   CTACTACAAGGATCT                 GGAT GAA GTCC                 TTTAAGCTCTCCCGA  49 10
 CLH39_14485 3152490 .. 3152500 +  -8.2  -4.96773   TGCCGCTCCCGTTTC                 CGGC GTG GCCG                 TTTCTTTTTGCTTGA  90 165
        cadR 3157549 .. 3157562 +  -2.3  -3.16564   GACGGTCTATTTGAC               GCTGC TTGG GCAGA                TTCATGGGCTGGCCA  41 220
 CLH39_14520 3159488 .. 3159530 + -10.1  -4.11216   GCTTTGAATACGACT GTTTTT-TGCGTCCGGGC AGACACAG GCTCGGACGTAGAAAAAC TTTTAAGGCTCAGCC  80 34
 CLH39_14525 3160026 .. 3160045 +   -10   -5.0916   CTACGCCTTTGGCTT            GCTGCCCCC CGA GGGGG-AGC            TTTTTGTCTTGGGAC 100 74
 CLH39_14535 3162189 .. 3162199 +  -5.4  -3.82083   CAAGCGCATCGGAAA                 CTTG ACG CAAG                 TTTGCATTCTGATGA  61 21
 CLH39_14550 3164898 .. 3164925 + -14.2  -6.02345   AGAAAACCATTGAAA        TCAGCCCATAGC ATTT GCTTTGGGCTGA         TTTTTTTTGTCCTTG 100 41
 CLH39_14560 3166919 .. 3166942 + -16.8  -4.45083   GCCAAAAATACAAAA          GCCCAGCTAC GCAA GTAGCTGGGC           TTTTCTACGTCTGGC 100 37
 CLH39_14570 NONE
 CLH39_14575 3170648 .. 3170687 + -15.1  -3.91541   AAGCAAGCAATCCCA  GGGCCTGTTCCATGCTT GATCAA AAGCACAGAACAGGCCC   TTCTTCATTTCATCA  95 78
 CLH39_14585 3171571 .. 3171584 +  -2.3  -5.26316   GATCAGTACTCCAAG               GCCAC GTCG GTAGC                TTTTTTATAACCTCA  78 326
 CLH39_14600 3173629 .. 3173648 +   -15  -2.98881   GGATTCAAACGAACA            GAGGGGGC ATTC GCCCCCTC             TATGCTGTTTGATCT  86 260
 CLH39_14620 3178675 .. 3178709 + -11.4  -3.14132   CATTGAACTGCTCCA     GATCCTGGGGCGACAT GAT ATGGCGGGCCAGGATC     TTGCTACGCAGGCCC  69 244
 CLH39_14630 3180671 .. 3180695 + -17.2  -4.09685   CCGCCTAAAACAAAA          CCCCCGCAAG GGATG CTTGCGGGGG          TTTTGAGGAATAAGA 100 56
 CLH39_14665 3189530 .. 3189543 +  -9.5  -3.03007   TTTTCAATCAGCTCC               CGCGC CCAA GCGCG                TGTTGCCAAGGTATT  64 412
 CLH39_14685 NONE
 CLH39_14690 3194356 .. 3194380 + -10.1   -4.7254   CTAAGCATAAAAAAA          GCGTTCTGA AATACAC TCAGAACGC          TTTTTACTACAGGCT 100 300
 CLH39_14735 NONE
 CLH39_14740 3209566 .. 3209594 + -15.3  -4.83246   GGACGCGCACCCAAA        CCCCGGAGCATTA CCA TCGTGCTCCGGGG        TTTCTTTATTTCTGC 100 52
 CLH39_14745 3211269 .. 3211279 +  -4.6  -3.29461   AATCAGGCTTTGTCT                 TCGG ATT CCGG                 TTCTGGCAAGGGTTC  50 100
        hpnC NONE
        hpnD NONE
 CLH39_14820 3225474 .. 3225490 +  -6.6  -2.83715   CACAACGAAACGACG              TTCACG CTGAT CGTGAA              TATGCTCATCGTACA  49 429
 CLH39_14845 NONE
 CLH39_14850 NONE
 CLH39_14855 3232722 .. 3232738 + -13.7  -6.06723   CGCTACTCACTCAAA              CCGGGTC CTG GACCCGG              TTTTTTTTTACCGCC 100 48
        pdxA NONE
 CLH39_14865 3234834 .. 3234855 + -13.1  -5.31275   ACGATGAATAAAAAA           GAGGCATAC CAAG GTATGCCTC            TTTTTTGTCCTGACA 100 83
 CLH39_14925 3245480 .. 3245509 + -16.6  -5.31456   CACAGCCAAATAAAA       TGCCCCAAAAGC ACACAG GCTTTTGGGGCA        TTTTTTATGCCTTGG 100 62
 CLH39_14950 3251582 .. 3251601 +  -5.6  -4.29106   AGGAGCCTGGACGCC            GTCGTGAC CTGG GTCGCGTC             TTTATTGGTCTGGGC  69 473
 CLH39_14965 3256367 .. 3256392 + -13.3  -4.21607   AATTTGCAGTCTTTC         TTCGGCCCTCC ATCA GCAGGGCCGAA          TTTGTATTGAATGCC 100 54
 CLH39_14970 NONE
 CLH39_14975 NONE
 CLH39_14980 3258685 .. 3258706 + -10.1  -5.95539   CCGAACAAGAAAAAA           GGGCCGCTT TCAC AAGCCGCCC            TTTTTTTCTTTAGCG 100 68
 CLH39_15040 3272227 .. 3272246 +  -8.6   -5.4505   AGCAGAATCAAACAA            GCCAGC-CA ATT TGTGCTGGC            TTTTTTGTTGCCCGC 100 57
 CLH39_15045 3272858 .. 3272869 +  -4.4  -3.36452   CCAGTCCGGCTGAAC                CTGT AAGC ACAG                 TTCGTATTACACCAT  52 393
 CLH39_15050 3273143 .. 3273157 +  -7.1  -5.96219   ATAAATTTAAAAAAA               CCGGA CTTAT TCCGG               TTTTTTTTATGCCTG 100 65
 CLH39_15055 NONE
 CLH39_15060 3274048 .. 3274079 +  -2.2  -2.75022   CTCCCCAAAAAAGAC      ATGTCTCTGCCCC CTCTCCA GGGGCAGCG-CAG      CTTATCTCTACAGCG  39 48
 CLH39_15065 3275577 .. 3275597 +  -5.3  -3.35679   ATCAACTGCACAGAA            GTCCGTGCT GCC AGCAAGGCC            TTCTCAATACCGGGG  53 477
 CLH39_15075 3277856 .. 3277871 +  -2.4  -4.24342   ACCGGAGTGGAGAAC              ATGGGG ATAC CCCCGC               TTTCTTCCTCAAGAA  59 366
 CLH39_15105 3283445 .. 3283470 + -14.8   -5.0925   AACGCAGTCAAAAAA         GGCCGAATCC CATACA GGATTCGGCC          TTTTTAGTTTTCCGG 100 106
 CLH39_15145 NONE
 CLH39_15150 3291013 .. 3291025 +  -3.3  -2.73364   GGAATACGCTCAAGC                CTGCT CCG AGCTG                TCGTTCAGCTCCACA  41 52
 CLH39_15160 NONE
 CLH39_15165 3296109 .. 3296148 + -15.8  -4.08216   AATCCCGGCCCAAAC  ACACCAAGCCCTGCGTGA GCAT TCATGCAGGGCTTGATGC   TTTTGGCCCGCCTGA 100 48
 CLH39_15170 3297202 .. 3297247 + -16.3  -4.09243   CGGTACAAGGAATAA AGAACAGCTCCAAAAGTGAGA TAAG TCTCTCTTTTGGAGCTGCTCA TTTTCAAGCAATCTC 100 261
 CLH39_15200 3308604 .. 3308630 + -13.7  -5.68438   TTAGCTGAATAAAAA         CCGGATGCAGC GTAAA GCGGCATCCGG         TTTTTTATTTCATGA 100 47
 CLH39_15220 3314026 .. 3314036 +  -6.8  -2.77043   CAGCCTTGAAGCCTA                 GCCT GTC AGGC                 ATTTGGGCTGCTGCA  53 32
 CLH39_15260 3321376 .. 3321396 +   -14  -5.81412   CGCTAGTCTGCAAAA            TCCCCGCC TGATT GGCGGGGA            TTTTTTTTGCCTGAG 100 47
 CLH39_15285 NONE
 CLH39_15290 3330190 .. 3330219 + -17.2  -3.17794   GTGATCTAACCCACA       CGGCCCCGC-TGC ATTGC GCACGCGGGGCCG       TCTTGCTGGTGACTT 100 69
 CLH39_15295 NONE
 CLH39_15300 3330951 .. 3330973 +  -6.4  -2.62192   ATTCAGCTTCCCGTA           AGTCTTATAT AAG ATATAAGACC           ATTGCTTCGCTGCGC  50 51
        acnB 3333671 .. 3333699 + -21.8  -5.31519   AGCGCTTGCAAAAAA        CGCCTTCGCCGC TTCAT GCGGCGAAGGCG        TTTTTCTTTGCCTGT 100 46
 CLH39_15310 3335163 .. 3335193 + -12.7  -2.90075   ACGGCAATTGCACTG      CGTCATCC-CGTCC AGCC GGATGTGGATGACG       TCTCCTTCCCCACAC  78 47
 CLH39_15315 NONE
 CLH39_15320 NONE
 CLH39_15325 NONE
 CLH39_15330 NONE
         efp 3341091 .. 3341110 + -13.6  -4.75372   GTACGCGCAAAAAAA            GGGGCTGT TTTT ACAGCCCC             TTTTTCCTGCCTGCT 100 66
 CLH39_15365 NONE
 CLH39_15370 NONE
 CLH39_15375 3350479 .. 3350495 +  -7.9  -2.57795   GCCCAACCAGCTGTA              GCCACTC AAT GCGTGGC              TCGATTAGTGCTAAG  55 123
 CLH39_15380 3351352 .. 3351372 +  -6.1   -3.9093   ATCGCTGCGATGACA            TCCAGGCCT TTC AGATCTGGA            TTGTTATCTGATAGC  64 346
 CLH39_15395 3356529 .. 3356543 +  -8.5  -2.53822   ATGTGTTTATCAATG               GGCGG ACAGA CCGCC               GTATTGTGACATAGA  58 469
 CLH39_15440 3366690 .. 3366703 +  -8.1   -2.8739   CTGCGTGGCAAGGAC               GCCTG ACCC CAGGC                CTTTGCCTTCGTATA  60 20
 CLH39_15445 NONE
 CLH39_15450 3368419 .. 3368429 +    -4   -2.7185   AGGTATTATTAATCC                 TTCA AGC TGAA                 TGCTTCCCAGCTGCT  44 44
 CLH39_15455 NONE
 CLH39_15460 3369195 .. 3369209 +  -4.2  -2.71712   CAGGCTGACGCTCCC               CGGG ACGGCCA CCCG               CTTTGCAAGACAGAC  45 33
 CLH39_15465 NONE
 CLH39_15470 3371381 .. 3371395 +  -5.7   -3.5764   GTAACGAGCATCGTC               GGCAT CCATA ATGCC               TTTAACAATCAGCTT  55 412
 CLH39_15480 3372540 .. 3372559 + -10.8  -5.42514   ATATTCAGTAAAAAA            GCCATTTC TTCG GAAATGGC             TTTTTTGCTTTCTGC 100 40
 CLH39_15495 NONE
 CLH39_15500 3378199 .. 3378220 +  -2.3   -4.6902   TTCCCAAACTATTTT           GCATTTATT TCTA GAAAAATGC            TTTTTAGGCTTGTCA  65 116
 CLH39_15505 3378436 .. 3378460 + -18.7  -5.30616   ACTCTGAAAAGATCA          GCCCTGATGAC ATC GTCATCAGGGC          TTTTTCTTTGCCTGC 100 113
 CLH39_15510 3379049 .. 3379077 +   -11  -4.72272   CTACTCAACAAGAAA       GCGCTCTGG-CCC GCAA GGAACCAGAGCGC        TTTTTACTGCCAGCG 100 48
 CLH39_15530 NONE
 CLH39_15535 NONE
 CLH39_15540 3386465 .. 3386501 + -12.4   -5.4833   CACTGAATGGACAAA   CCCCTTGA-TGCTGGAT TCTC ATCCGGCCCTCAAGGGG    TTTTTTATTGCCTGA 100 105
 CLH39_15550 NONE
 CLH39_15555 3388898 .. 3388926 + -14.5  -2.68072   GATCCCAAGAGATGA        CAAGGCCCGGACA GCT TGCCCGGGCCGTG        ATTCCTTCTGCTCCC  81 39
 CLH39_15560 3390438 .. 3390450 +  -5.5  -3.85704   GTACCGTCGCCTTGT                GGGAC CGG GTTCC                TTTCCTCATTCATCC  61 384
 CLH39_15610 NONE
 CLH39_15615 NONE
 CLH39_15620 3401015 .. 3401031 + -13.7   -3.1332   TTGGCGGGTCTCCGG              CCCGTGC TGC GCACGGG              TTCCCTGGTCTCTTG  79 187
 CLH39_15645 3406226 .. 3406247 + -15.9  -4.02581   ACGCGCTACCCCTCT           TGCCCGCTG CACC CAGCGGGCA            TTGTCTTTTATGAGC 100 54
 CLH39_15650 3407167 .. 3407188 + -10.2   -5.1287   TTAACACCCTCATCC           GCACACAG CCTGCC CTGTGTGC            TTTTTTACGTCTCGA 100 79
 CLH39_15655 NONE
 CLH39_15660 3410424 .. 3410458 +  -3.6  -3.14564   CACATTAACTATCGC    GCTGCCTGAACTC CGATCCTGAA GGGT-CGGGCAGC     TTACTCAACGGATCA  46 4
        mdcA NONE
        mdcC NONE
 CLH39_15675 3413447 .. 3413461 +  -3.5  -2.79796   CCGTCAAAGCATTAC              GCAGCC AGGA GGC-GC               TGTCATGAAATGGGA  44 3
        mdcE NONE
        mdcG NONE
 CLH39_15690 NONE
 CLH39_15695 3416941 .. 3416957 +  -2.9  -3.28712   GATACTTCGACTCCA              GGCTCAG CCA CTGAATC              TTGTCAGAAAAAACC  45 199
 CLH39_15715 3420959 .. 3420969 +  -6.8  -2.85351   GAGATTGCCGCCGAA                 CTGC GCG GCAG                 TCTGGTATGAACCCA  53 5
 CLH39_15720 NONE
 CLH39_15725 NONE
 CLH39_15730 3424947 .. 3424968 +  -7.3  -4.87328   TACCATCAAAAATTG           CCGCTTC ATACCCCG GAAGCGG            TTTTCTATTTGTCTA  85 362
 CLH39_15735 3426942 .. 3426963 + -12.3  -5.81032   TTTCGAAAGATCAAA           CTTCGCCGT GCTT GCGGCGAAG            TTTTTTTTCAACTTA 100 96
 CLH39_15740 3427941 .. 3427951 +  -6.8  -3.15544   TCGGCCAGTTCAAAC                 GCCA GCC TGGC                 TTGCTCCCACTCCAG  54 198
        mutS 3438812 .. 3438828 +  -9.4  -5.75478   TAAACAGTCCTGAAG              GGAGCC CAAGA GGCTCC              TTTTTTTATGTGGTT 100 38
 CLH39_15775 3440264 .. 3440289 + -11.1   -5.5112   GAGTTCAGAAAAGAA         GCGGGGCAGCT TGCA GGCTGCTTCGC          TTTTTTATTGCTAAC 100 63
 CLH39_15785 3442181 .. 3442196 +  -6.8  -3.92324   CTTCCACGCTCAAGT              GCTAGC CTGC GCTGGC               TTTGGTCTTCAGGAA  67 256
 CLH39_15790 NONE
 CLH39_15795 NONE
        bioA 3445921 .. 3445934 +  -2.3  -3.85698   CTGCTGAAGGAATAC               GCATG AGGG CCTGC                TTTGTGACGGGCACC  53 20
        bioD 3446776 .. 3446803 +    -4  -3.53012   ACGCCATGTCCCCGA        C-CCTGCCGCGCC TGC GGCTTGCCAGGAG        TTTGCACGCAAACGA  51 186
 CLH39_15840 3451667 .. 3451684 +  -9.8  -5.25805   AAAACATACTTGAAA             GCCCGC CACGCA GCGGGC              TTTTTTGCGTTTGTT 100 103
 CLH39_15845 NONE
 CLH39_15850 NONE
        paaX 3454885 .. 3454908 + -15.4  -5.75342   GGGCAAATAAAAAAC          CCGGTGTGAT CTGA ATCACACCGG           TTTTTTTTGCACCCC 100 127
 CLH39_15875 3458845 .. 3458863 +  -3.1  -3.29511   TTCCGTATCGGTCTG             GCGCT GGTGCCGTA AGCGC             TTCTACAACAGTCCC  46 11
 CLH39_15885 3463560 .. 3463585 + -10.5   -5.9663   AACTCCTCCTTAGCG         GCAGGCTGTCTT TCA AAG-CGGCCTGC         TTTTTTTTCATCTTT 100 81
 CLH39_15890 3465646 .. 3465667 +  -9.5  -2.73218   GCTAAAACCGAGGGC           TCAGGGCTT GACG AAGTCCTGA            ATTCGTTCTATTATG  65 36
 CLH39_15895 3465785 .. 3465814 + -14.5  -5.30616   CATTAAAGAATTAAA       GGCTTAGTTCATT GCAC AGTGAACTAAGCC        TTTTTCTTTGCCTGC 100 39
 CLH39_15900 3466142 .. 3466165 +  -6.6  -2.54276   GATTTCGCAGGGCTA          TCGGGCCTGA GCCT TCAGCCCCGC           CTGTTCCTTACCCGT  52 16
 CLH39_15920 3469110 .. 3469145 + -17.8  -3.08314   CCCCGACCAAAAAAT    TCAAAGGCCTTGCAGA GCAA TCTGCAAGGCCTTTTA     GTTTTGCCAGTTCGG 100 32
 CLH39_15930 3471001 .. 3471017 +  -3.6  -3.12668   AAGGCGGACTCGTCA              CGCACC AGATA GGTGCC              TTCGATATGCACATA  45 412
 CLH39_15940 3471829 .. 3471858 + -16.6  -3.09516   CCCGATTCATGTGCT       GAAAAACGCCCG CTTCGC CGGGCGTTTTTC        TTGGATGATCAAGCA 100 47
 CLH39_15960 3475315 .. 3475345 + -15.6  -4.51097   AGTCGGTAGCAGGAC       GAAAAACGGCGC CCCCCCA GCGCCGTTTTTC       TTTTCTACTGATTAG 100 119
 CLH39_15965 3477155 .. 3477188 + -11.8  -2.87132   AGGGATAAAAAAACA     CCCCAATCCTTGGA CGTAAA TCCAGCGATTGGGG      TGTGTGCCACACAGG  76 124
 CLH39_15995 3485263 .. 3485304 + -23.3  -5.06414   TCACCAGAACCTAAA AAACCCCCGAAAGTTGGAT TGCC ATCCAACTTTCGGGGGTTC  TTTTTATTCGCAGGC 100 211
 CLH39_16025 3491712 .. 3491736 + -17.1   -4.6951   TGCCGTAAATTATAA          GGCCCCCGCAC AAT GTGCAGGGGCC          TTTCTTTTGCGTGCT 100 43
 CLH39_16035 3492819 .. 3492831 +  -3.3  -3.36327   GGTGACGGCTGCCAC                CAGCA AAT TGCGG                TTATCGCTGAAATCC  47 250
 CLH39_16045 3495045 .. 3495081 + -15.4  -2.87132   GACTTGTGCGGAGTC    CTGTCAGGAACTGA CTCACCTCA TCAGTTCCTGACAG    TGTCTCCAGCGCCAC  86 112
         tal 3502727 .. 3502751 + -17.2  -4.06903   GAGCAGCAAAAAGAC          TCAGCCCGGC ATTGC GCCGGGCTGA          TTTGCTTTGAACCTT 100 117
 CLH39_16140 3522110 .. 3522128 +  -8.8  -3.67976   CCTGAAACAGGTACG             CCACCCGA CGC TCGCGTGG             TTTCAGGTTGATGCC  69 470
 CLH39_16160 NONE
 CLH39_16165 3525421 .. 3525440 +  -8.6  -5.76633   CGGCAGGTATAAAAA            GACGGCGCT GTC AGC-CCGTC            TTTTTTTATGTCTCG 100 51
 CLH39_16170 3526998 .. 3527029 +   -16  -3.83502   GCTTACCCCCTTATC      AAAAAGACCCGCCA TGGC TGGCGGGTCTTTTA       TTTGGTGTAAGCATA 100 102
 CLH39_16185 3528820 .. 3528834 +  -8.5  -5.06414   GCAGAAACAAAAAAA               GCCGC ATTAC GCGGC               TTTTTCTTGGACGAC  93 54
 CLH39_16195 3530222 .. 3530235 +  -9.5  -4.87328   GATGCTGTAAAAAAA               GGGCC GCAA GGCCC                TTTTATCTTTATGTA 100 31
 CLH39_16215 3533397 .. 3533412 +  -6.1  -2.61144   ACTTTCTGAAGGAGA              GCTGC CATGCT GCAGC               CTATTTCAAAACTGA  50 46
 CLH39_16220 NONE
 CLH39_16225 NONE
 CLH39_16230 NONE
        dapA NONE
 CLH39_16240 3538421 .. 3538433 +  -3.3  -3.60316   GGGTGGTTCTTACCA                CTGAG CTG CTCCG                GTTTTTTGAGCAGGT  49 123
 CLH39_16250 3541998 .. 3542015 + -12.7  -5.76633   GGCTGAAATGAAAAA             CCGGCCT GTGC AGGCCGG              TTTTTTTATATCTAC 100 48
 CLH39_16255 NONE
 CLH39_16260 NONE
 CLH39_16265 NONE
 CLH39_16270 NONE
 CLH39_16275 3547521 .. 3547547 +  -2.3  -4.71776   CGCAACCCTATACTT        GAG-CAGCCACT ATGA AATGGCTGATTC         TTTTCTTGGGTATTG  65 11
 CLH39_16280 NONE
 CLH39_16285 3548903 .. 3548919 +  -5.1   -4.1673   CCCTGCTTTTCCAGA              GCCGAAA TAA TTTCGGG              TTTCTTCAAGGCTTC  64 228
 CLH39_16295 NONE
 CLH39_16300 NONE
 CLH39_16305 3552692 .. 3552711 + -13.6  -5.96894   GGTTCGATGAAAAAA            GCGCAGCA TTTT TGCTGCGC             TTTTTTTGTTTCCGT 100 51
 CLH39_16315 NONE
 CLH39_16320 3557129 .. 3557143 +  -3.5  -3.62522   GCCGCCAGGAAGAAA              GCG-GC CATT GCACGC               TTGTTCCAGCCGTTC  49 289
 CLH39_16330 3558740 .. 3558755 +  -4.7  -3.55801   GTCTGTGCCTGACCT              TCCTG ACGCTC CAGGA               TTTCGCCCAATTGGT  53 72
         hda NONE
 CLH39_16345 NONE
 CLH39_16350 NONE
        folK 3563585 .. 3563616 + -10.1  -2.57344   ATCACCGGGTTGCTC      GCCCAGCAACATC ATGCGC GCTGTTGCCGGGC       CTTCTCCCGGCACTG  62 519
 CLH39_16385 3569921 .. 3569940 +  -7.8  -3.66803   TTGTATCGATAGCGC            CAGGAAGC CCAA GCTTCCCG             TTTCACGTCTTACAC  67 322
        glyQ NONE
 CLH39_16405 NONE
 CLH39_16410 NONE
 CLH39_16415 NONE
 CLH39_16420 3577699 .. 3577721 +  -6.2  -3.40299   CCCTGCTTTAAGGCA           GGTTGAACTC TAG GAGCTCTACC           TTATGCGTATCCTGC  57 30
        gloA 3578131 .. 3578148 +  -9.8  -5.75945   TTAAAGCAAACAGAA             CCGGCC TTAATT GGCCGG              TTTTTTTTGGCCCCT 100 37
 CLH39_16430 3579641 .. 3579676 +  -7.6  -5.27335   TCCCTCATAAAAAAA    CACCCCAAAACGGAAT CGAT ATCCAATTTTGGGGTG     TTTTTCTTTACGGGG 100 128
 CLH39_16450 NONE
 CLH39_16455 3586333 .. 3586356 +  -5.3  -3.48276   ATGGGTTTTGTAATC          GGGACTTGA TTTGCT TTGAGTCCC           TTGTCTGACAGGAAC  54 140
 CLH39_16460 3587129 .. 3587170 +   -13  -5.40072   GATAGTCACAAGAAA GCCCTTCAGGCCCTTGGC TTCATC GCCAAAATCCTGAAGGGC  TTTTTTTAGCCGACG 100 65
 CLH39_16510 3598176 .. 3598198 +   -12  -5.14965   TCGCCCGATAAAAAA           GCGAGCCATT TAA AACGGCTCGC           TTTTTTCATGCAGAT 100 86
 CLH39_16520 3601286 .. 3601305 +  -6.4  -3.83318   ATAGCGGGGCCAAAG            CTTGCCGT TACA ATGGCAGG             TTCTATTGTTGACGG  64 59
 CLH39_16525 NONE
        mgtE 3603313 .. 3603327 +  -9.2  -5.42514   TATGATTAAAAAAAA               CCGGCT TCT GGCCGG               TTTTTTGATTTCTGC 100 53
 CLH39_16550 3609121 .. 3609143 +  -5.5  -3.62046   AACTATCCTGGGCGG          CCAGCAAGGC ACGC GCCA-GCTGG           TTATTCAAACCATGG  55 145
 CLH39_16635 3629938 .. 3629963 + -14.7  -2.52635   CACAAGAGGAATACG         GCAGGAGCCGC AATA GCCGCTCCTGC          ATTGATACTCAACCT  78 224
 CLH39_16680 NONE
        minC 3643564 .. 3643583 + -16.4  -4.84017   TCCTAACAGTACAAG            GCGCCGGC TTTT GCCGGCGC             TTTTTATAGAGGCTT 100 35
        minD 3644585 .. 3644604 +  -3.6  -2.94695   AAGCGCCTGTTCGGA            GGAAAG TAATATGT CTTTCC             TGTCCTTCCTGCTCG  45 17
 CLH39_16695 3644908 .. 3644930 + -13.5  -4.28994   CTTTGCTGCTTGAAA           TGGCCATCC GCAAG GGATGGCCA           TTTTCATGGCTACTC 100 60
 CLH39_16700 3646322 .. 3646358 + -21.8  -4.26903   CTAAGCAAGAAAAAA   GCCTCAAAGCC-GGGAG GGAT CTCCCAGGCTTTGAGGC    TTTTAATCCGATGAG 100 68
 CLH39_16720 3649866 .. 3649901 +  -8.3  -4.27316   CCACCGTATCCTGCG    CCAG-CAGCCACAAGC CCAGT GCATGTTGCTGGCTGG    TTTTGCCTTGCACCG  77 253
        uvrA NONE
        pabB NONE
 CLH39_16740 3659119 .. 3659138 +  -2.8  -3.18728   TGAGGATTGATCTGC            GCAATGCGC TGG GC-CATGGC            TTCAATCTTGGCCAT  45 522
 CLH39_16750 NONE
        pdxH 3660954 .. 3660968 +  -3.5  -3.17075   GGCAGGTGAGCCGAC               TGGCT CCTTA AGCCG               TTCCCTTGGGGACGC  46 15
 CLH39_16760 3661557 .. 3661571 +  -4.2  -4.25104   GACGACAGCATGGCG               GGAGTA CAC TACGCC               TTTTGCTCCAACGCG  63 66
 CLH39_16765 NONE
        purU 3663637 .. 3663675 + -15.5  -4.77036   TAAGACTGAAAAAAA  GCCCTCAATGCTATGGAT ATGG ATCCAC-GCATTGAGGGC   TTTTTACTGGTCACC 100 62
 CLH39_16785 3668042 .. 3668064 + -17.8  -3.47349   AAAGCAAACCAAACA           GGGCAAAGCC AGA GGCTTTGCCC           TTGTCCGTTTCAGCC 100 39
 CLH39_16795 3670288 .. 3670300 +  -9.1  -3.57144   ATAAAGGGGTACGCG                GCGCA TAG TGCGC                TTTCAAGCTGCCCGA  66 390
 CLH39_16840 3679367 .. 3679390 +   -11  -5.06414   GCAGAAAACAAAAAA          GCCAGCCAAC GTTC GTTGACTGGC           TTTTTCTTACGAAGC 100 301
 CLH39_16865 3684799 .. 3684822 +  -3.8  -4.56597   ATGCACATCTTCACA          CACGCCCA AAATAGCC TGGGCGTC           TTTTTCCAACGCAGG  70 161
 CLH39_16890 3691107 .. 3691124 + -12.7  -4.91473   CTCCAGTAAAGTATT             TCGGGCC GCAA GGCCCGA              TTTCTTTTTACATTC 100 80
 CLH39_16900 3693667 .. 3693700 + -17.7  -4.83722   TGTTCCAAAAACAAA     CAAAGACCAT-CACCG CAA CGGTGCATGGTCTTTG     TTTTATTCTGCTCTT 100 65
 CLH39_16915 3696908 .. 3696928 + -15.5  -5.60993   GTTTTCCGCAATCAA            CAGCCCTGT AAA ACAGGGCTG            TTTTTTTATGGAAAA 100 60
 CLH39_16920 3697901 .. 3697914 +  -8.1  -3.53012   CAGCATTGCCTGTTT               GAGCG TGTC CGCTC                TTTGCAAGGCAGCGA  62 372
 CLH39_16990 NONE
 CLH39_16995 NONE
 CLH39_17000 3712577 .. 3712607 +  -8.3  -3.86346   AGTCGCTGTAATGCC      T-CCGACCCCGGAC CTCG GTCCGGGGTTGCCA       TTTCTGCACCCGTCG  72 30
        secD NONE
        secF 3715524 .. 3715548 + -15.1  -5.72622   TCGCTGTTAACGAAA          GCCCGACATTG TTT TAATGTCGGGC          TTTTTTGTTTCTAGG 100 54
 CLH39_17025 NONE
 CLH39_17030 NONE
 CLH39_17035 3720284 .. 3720310 +  -8.9  -4.78752   TTCCCGCATTCCGAA        TGATGAC-AGGT ACAT ACCTTGTCATCA         TTTTTCGGTTATGCT  91 103
 CLH39_17040 NONE
 CLH39_17045 3722858 .. 3722913 + -13.5  -2.53876   GCACCAACAAACTCA CGGCAGGCTTTGCGCTAGCAGGGATT GAAAG GATTC-TGCTATTGCAAAGCCTGCGG TGCATTCGGGTACAA  77 41
 CLH39_17055 NONE
 CLH39_17060 3726466 .. 3726485 +  -7.8  -3.23899   CGCCAAGATTCTTGG            CAACCGCT GCGG AGCGGTAG             TTCAGTTGGTTAGAA  61 36
 CLH39_17065 3726567 .. 3726581 +  -6.4  -4.17089   AAAAGATTTAAAAAA               TCAGTC CCA GACTGG               TTTTAGCAGTTTGAA  68 40
 CLH39_17070 NONE
 CLH39_17075 3726866 .. 3726879 +  -8.1  -2.80398   CCAAGATTCTTGGCA               CCGCT GCGG AGCGG                TAGTTCAGTTGGTTA  59 38
 CLH39_17080 3726963 .. 3726988 + -12.7  -5.30155   CAAAAAATTCAAAAA         GCCTGATAGAT TTCG ATCTGTCAGGC          TTTTTTCATTGGTGG 100 39
 CLH39_17090 NONE
 CLH39_17095 3731894 .. 3731909 +  -2.5  -4.74453   CTATTTACCTACCCG              GAGTC CTGCAT GGCTC               TTTTTCGCTCTCTTA  65 71
 CLH39_17100 NONE
 CLH39_17105 NONE
 CLH39_17110 3736728 .. 3736755 +  -9.2  -3.04501   CAGGCGCGCCACTCG        TGGCCGGT-TGCT ACC AGCACACCGTCCA        TATTGAAGACTTGAT  64 105
        bioB NONE
 CLH39_17125 NONE
 CLH39_17130 3740411 .. 3740427 + -13.7  -5.64274   GGCAGAAATAAAAAA              CCCAGGC TTG GCCTGGG              TTTTTTTATGAGTGA 100 47
 CLH39_17160 NONE
 CLH39_17165 3748900 .. 3748913 +  -3.8  -2.94099   GGCCTTAGCCAGAGC               CACC GCGCCG GGTG                TATATAATGCAACCA  45 33
        moaC NONE
        moaD NONE
 CLH39_17180 NONE
 CLH39_17185 3750806 .. 3750829 +  -3.1  -2.50387   CGACCTCCTTTCCAC          CGT-GCTCTG ACGCA CCGAGCCACG          AATTGTTTTATCGAA  40 75
 CLH39_17190 3752104 .. 3752121 + -12.7  -6.12328   CTTGCCATACAAAAA             CCGCCCT GATC AGGGCGG              TTTTTTTTGTGTTGT 100 67
 CLH39_17210 NONE
 CLH39_17215 NONE
 CLH39_17220 NONE
 CLH39_17225 NONE
 CLH39_17230 3761686 .. 3761701 + -11.8  -5.28942   CGCAGACACAGAAAA              GCCCGC CTAG GCGGGC               TTTTTCTTTGGGCTG 100 48
 CLH39_17245 3763446 .. 3763457 +  -7.2  -2.72379   CAGGCTTTGACCAAG                GCGC TGTA GCGC                 TCCTTGCCACCTTGA  56 210
 CLH39_17255 3764736 .. 3764748 +  -6.3  -3.28712   ATCATCCCAGCGTCC                CATCA CGC TGATG                TTCTGCAGGCCCGGA  55 294
 CLH39_17270 NONE
 CLH39_17275 3768475 .. 3768512 + -22.1  -3.61103   CAGACGGACGGATAG   CAGACGGCCCCGGACTC AAAA GAATCCGGGGCCGTTTG    TTTAGGGTCCGATTA 100 59
 CLH39_17315 3776632 .. 3776664 + -13.5  -2.90219   CGTGGCAAGCCTTAA      GCTGACTCCATTGTT TTT ATCAAAGGAGTCAGC      TATGTCCACCTTCTC  80 66
 CLH39_17320 3776907 .. 3776924 + -12.7  -5.55664   CAGAGCCAATAAAAA             GGCCGGT TGAT ACCGGCC              TTTTTTTCATGCTGC 100 72
 CLH39_17325 NONE
 CLH39_17330 3779430 .. 3779446 +  -2.1  -3.57561   CCCATTACCGTTGCC              CCGCCAG GGC CTGCCGC              TTTGCCGGATTCAAA  47 433
 CLH39_17385 3787540 .. 3787551 +  -7.2  -4.07885   TGAAACTCCACGGCA                GCCG AAGT CGGC                 TTTTCAAAAGCGATA  68 501
 CLH39_17395 3788781 .. 3788800 + -13.6  -5.86965   GGACAGAACAAAAAA            CGCCATGC AAAT GCATGGCG             TTTTTTTTGCTACCT 100 50
 CLH39_17400 3790838 .. 3790870 + -26.5  -3.75229   AAGTCTTCACAACTA      TTGCGGCATCCTGGC CAG GCCAGGATGCCGCAA      TTTCAATCTGCTTTA 100 47
 CLH39_17410 3793664 .. 3793678 +  -3.4  -2.87132   CGGCGCAAAACATAA               GTGGCG CTC CCCCGC               TATCTGAACGACAAC  42 41
 CLH39_17475 3804367 .. 3804382 +  -6.8  -5.42259   TGCCGGTTCCGGCAG              GCAGGC GCTC GTCTGC               TTTTTTTCCAACTAA 100 71
 CLH39_17480 NONE
 CLH39_17485 NONE
 CLH39_17490 NONE
 CLH39_17495 NONE
        fahA 3810001 .. 3810035 + -16.4  -3.66095   GACACCTTTGTAAAC     GACACCCCGCAGCCGG TAT CTGGCTTCGGGGTGTG     TTTACGTAAAGCTTT 100 47
 CLH39_17515 3813910 .. 3813926 +  -7.9  -4.56597   CAACTTTGGCTTGCT              GTCCCCC AAG GGGGCAC              TTTTTACCGGGACGA  79 178
        uraD 3825689 .. 3825701 +  -9.1  -4.53602   GTAGCGCCAGCCTGC                GGGCA CGC TGCCC                TTTGTTTCCTCTGAC  86 84
 CLH39_17565 NONE
 CLH39_17570 3827088 .. 3827098 +  -2.4  -3.28879   CTAAGACCCTTTCCA                 CCCC TAC GGAG                 CTTTTATGCCTTCTA  44 37
 CLH39_17575 3827307 .. 3827322 + -11.8  -5.82281   CAGACCCATGAAAAA              GCGGCC ACAG GGCCGC               TTTTTTTATATCTTT 100 43
 CLH39_17580 3829155 .. 3829194 + -10.8   -3.5594   ACGGCTAAGCCCCTT  TTTGATCAGCCGCCC-TGC CTG GAATGGGTGGCTGTTCAAA  TTTCCGCAGTACCTT  77 33
 CLH39_17585 3830241 .. 3830256 +    -9   -5.7946   GCAGCATACAAAAAA              CCGCTT TTCG AAGCGG               TTTTTTTATTCAGAA 100 48
         gcl 3833066 .. 3833083 +    -2  -2.83273   ATTGACGCCCCCACC             G-CCATC TCGCT GATGGAC             TGATTGCTGATTTAA  39 5
         hyi NONE
 CLH39_17605 3834903 .. 3834918 + -11.8  -5.75342   CGGGACATCCAGCAA              GCGGGC TGCG GCCCGC               TTTTTTTTACCGCCA 100 101
 CLH39_17610 NONE
 CLH39_17615 3836727 .. 3836742 +  -2.4  -3.35597   ACGCTCAGATCGCCC              GCGCCG GTAT CGCTGC               TCTTTGAGCCATCGA  46 3
         pyk 3838228 .. 3838257 + -14.4   -4.4261   TTGGCGATAAAAAAA       GCCTTGTCCATC CACAAT GATGGGCAAGGC        TTTTCCTATTCAGAC 100 53
 CLH39_17655 NONE
 CLH39_17660 NONE
 CLH39_17665 3846107 .. 3846136 + -13.6  -5.05782   CGAAACCAAATAAAA       GGCCTGAATCCG ATGACA CGGCTTCAGGCC        TTTTTTGCGATCAGT 100 110
 CLH39_17705 3858230 .. 3858253 + -10.3  -2.99948   CACTGCCCCCGAACA          CCCTGAGTC GTCAAA GGCTCAGGG           TGTGTGCATTTGTAT  70 91
        metG 3860477 .. 3860497 +  -9.7  -5.38047   CTGATACGCAAAAGA            GCCTCGC CGAGAAA GCGAGGC            TTTTTTGTCTACATA 100 50
 CLH39_17715 3861717 .. 3861731 +  -4.2  -3.14944   GATACGGGGCAGACC               TTGTGC TTG GCCCAA               TTCAATATGGTCATC  45 197
 CLH39_17725 3863579 .. 3863601 + -14.9  -4.27316   TGGTCTGAAACAGAA           CAGCCGCTG CCCGT CAGCGGCTG           TTTTGCATTACAAAC 100 43
 CLH39_17730 3864228 .. 3864245 +  -8.4    -4.323   AAAGACCATTCAAAA             CCCTGC CATCAA GCAGGG              TTTTGCGTATTTACA  79 44
 CLH39_17735 3865537 .. 3865564 + -13.5  -5.64274   AAAGCCTGGTCCCAA        GCCGAGACTGCC CACAA GGCAG-CTCGGC        TTTTTTTGTACCTGC 100 52
 CLH39_17740 3867560 .. 3867587 + -14.2  -3.20573   CAAGCAAATGGAATA        GGAGCTATGAGC CAGC GCGCATAGCTCC         TCTTGATGTAAATCA  86 295
 CLH39_17745 NONE
 CLH39_17750 NONE
 CLH39_17755 3870462 .. 3870495 + -20.4  -3.02639   CTGTTTTTAAAACAA     GGGCGGGGCAAGGT TTATCT ACCTTGCCCCGCTC      TACTTGTTTACAGCT 100 66
 CLH39_17760 3872228 .. 3872255 +  -6.2  -4.18018   AATAGTTCAATTCAA        AACAGATCCGGG ACGA CCTGGATCTGCC         TTTTCAGTACAGGGA  68 264
 CLH39_17765 3873456 .. 3873474 +  -6.7  -3.59262   GAAGAACAAGGCAAA             CAGAGCC AAACC GGCTTTG             TTTGCACCTATCCAA  62 41
 CLH39_17780 3875975 .. 3876022 +  -7.8  -4.46155   CAAGTAAGAAGGCAA GCCAGTGTCTGAGCCTGCAAG ATCACTG CTT-CGGGCTTGAGCACTGGC TTTTCTCAATATCTG  79 34
 CLH39_17800 3878884 .. 3878937 + -12.3  -4.68512   GCTCATCAGGCAGCA CCACAGGTCTTGTGAACCGCCCCAC TTTT GAGGATCGCTTCCCAAGACCTGAGG TTATTTTTCTTGTGC 100 80
 CLH39_17825 NONE
         pip NONE
        thiS 3883093 .. 3883109 +  -4.3  -2.75844   GTGGTTGCCGTCGGT              GGCGGCT GAT ACTCGCC              CTTTAAAATGCACAA  45 17
 CLH39_17840 3883698 .. 3883713 + -11.8  -5.52023   TCAGGACGAAAAAAA              GCCCGC TTAC GCGGGC               TTTTTTCTTGGTGGT 100 48
 CLH39_17850 NONE
 CLH39_17855 NONE
 CLH39_17860 3887127 .. 3887154 +  -9.8  -3.72241   ATACAGATGCAAAAA        GCCCCGATCATC GTAA GACGATCAGGGC         TTTACCTGATTAGTA  77 115
 CLH39_17875 3890594 .. 3890619 +    -6  -3.13728   AACAGACGCAAGAAA         ACCCGCCTGC ATATCA GCAAGCGGGC          TTCCATATCGATGCT  53 50
 CLH39_17885 3892493 .. 3892505 +  -7.7  -2.82516   AAAGCCTGGTGCAAG                GTCAG CCC CTGAC                TATGCTCCTGAGCAC  54 357
 CLH39_17895 NONE
 CLH39_17900 3895470 .. 3895511 + -13.3  -3.05384   GCTTTAAATAACAAA TATTTAGGAGTGCTTTGAG TTTT CTCAAAACACTCTTGAATA  TTGGCTCCGCAAACG  81 120
 CLH39_17905 3896970 .. 3897001 + -13.8  -3.40299   TTGCTCATCCAGCAA      CTGGCCTTGTTTAG AAAT CAGAACAAGGCCAG       TTCTGCGTATGCTGA  84 45
 CLH39_17915 3899310 .. 3899327 +    -2  -2.75844   GGAACTGCATTAAGC             CCAG-CT TTTGC AGACTGG             ATTTACAATAGCGCA  39 28
 CLH39_17920 3899744 .. 3899801 + -17.2  -2.97676   CCCTGCTCGTACTTC GCGGCATAGAAAAAGCCCTGCCAAGC TGCCCT GCCTGGCAGGGCTTTTTTTATGATTC GTTCTTTCGATGAGT 100 47
 CLH39_17925 NONE
 CLH39_17930 3902344 .. 3902362 +   -16  -5.07486   TGCAATTCACCTTCA             GGGCTGCC ACT GGCAGCCC             TTTTTCTTGAGCCTG 100 51
 CLH39_17935 3903339 .. 3903358 +  -2.1  -3.36256   AGCTCGCCCACTTCG            TTGGTCA GAGCCA TGGCCAG             ATTTTTGGGGCTATG  46 289
 CLH39_17965 NONE
 CLH39_17970 3907568 .. 3907581 +  -3.1  -2.86343   AGACGATGGCAGTGT               C-CTGC TGA GCAGCG               TCTCGTAATTACAAT  41 4
 CLH39_17975 3910420 .. 3910430 +  -5.4  -3.01924   GCGTAACTGGCAGGC                 TCGA AAG TCGA                 TGTTGCGGCCCCCTC  49 273
 CLH39_18040 3924053 .. 3924066 +  -2.3  -4.35091   CGCCACCAGCCCTTG               CCGCT TTGC ACCGG                TTTGTTATCGGTATT  62 126
 CLH39_18060 3928655 .. 3928686 + -17.4  -4.87389   CGCCCTCATCCTTCA      TCTGCAAGGCGCGT ATAC GCGTGCCTTGCAGA       TTTATTTTTCCGGTA 100 46
 CLH39_18065 NONE
        lldD 3930625 .. 3930637 +  -4.1  -3.53224   GCTTGTACAGGAGTC                TTGAC CAT GTCAG                TTTCCACCAGCGCTG  52 22
 CLH39_18075 3932449 .. 3932478 + -14.4  -5.97575   CTTCATGCAAACCAG       CAGGCCC-CCAAG CTCGA CTTGGTGGGCCTG       TTTTTTTTGTGCATT 100 122
 CLH39_18080 NONE
 CLH39_18085 NONE
 CLH39_18090 NONE
 CLH39_18095 NONE
 CLH39_18100 NONE
 CLH39_18105 NONE
 CLH39_18110 3942238 .. 3942271 + -11.1  -4.08557   TGAATTTGATGACAG     GGCCTTG-TTGCGC GATAAAA GCGCAGGCAAGGCC     TTATTCTTTCCAGAA  86 51
 CLH39_18130 NONE
 CLH39_18135 NONE
 CLH39_18140 3948004 .. 3948015 +    -3  -3.92075   CATTCAAGGACACGA                TGAT GGGC ATCA                 TTTCTCCGTAGCGCT  55 224
 CLH39_18150 NONE
 CLH39_18155 3951195 .. 3951212 +  -2.7   -4.0162   TTCCGGATTCGGAGA             GCCAT-CA AAC TGCGTGGC             TTTATGGTCTACCGG  56 178
 CLH39_18180 NONE
 CLH39_18185 3956912 .. 3956938 + -10.9    -4.614   TGCACAGAACGCTAG         AAACATGCCCC TTTTT GGGGCATGTTC         TTTTCTATCCTTCAG 100 106
 CLH39_18190 3959398 .. 3959429 + -15.2  -3.23274   GATTAAGCAAAAAAA      GCAGACGACACGTC TACG GGCATGTCGTCTGC       TTGCCTTCTACCGCA  90 115
 CLH39_18300 3981788 .. 3981809 +  -2.1  -2.63631   CGACTGTTAAAACCG           CGGCCTGCG CACC TGCAGGCAA            TCCTCTACCAGTTGG  39 119
 CLH39_18335 3991840 .. 3991871 + -10.8  -2.59927   ACTACGCTTTCTGAA      AAAGGCGTGATCCC TACC GGGGTCACGCCATC       TGGCTTATGGCGCTT  68 127
 CLH39_18340 3992694 .. 3992744 + -11.2  -3.73224   CGCTCAAGCAACACC GGATACATGGTTTTGAGCCAAGCG CCG CGCTTGGCTCAAAACTGCACATGC TTTACTCGCAAATAC  82 59
 CLH39_18350 NONE
 CLH39_18355 3995039 .. 3995060 + -10.2  -4.45083   CTCAGCAGAAAAGAA           TAAGCGGC CTATTA GCCGCTTA            TTTTCTAAGTGTGCA  91 190
 CLH39_18370 3999082 .. 3999102 +  -9.7  -5.45652   CGCTCCATAAAAAAA            CCCGCCA AGACCTC TGGCGGG            TTTTTTATTGAACAT 100 125
 CLH39_18395 NONE
 CLH39_18400 NONE
 CLH39_18405 NONE
 CLH39_18410 NONE
 CLH39_18415 4008211 .. 4008232 +  -8.7  -4.36914   ATAAGAGAAAGCATC           GTGCGAGGT GATG ACCTTGCGC            TTTTCTACCGGCACC  81 342
 CLH39_18435 4011471 .. 4011487 +  -5.8  -2.70946   TGCCTTGTACCTTTC             GCC-CGC CACT GCGAGGC              ATGTTTATGAACGCG  50 202
 CLH39_18440 NONE
        dksA 4013146 .. 4013169 + -13.8  -5.28176   TCACCCTGATAAAAA          GCCCGCCCGA TCAT TCTGGCGGGC           TTTTTTGTGGGTCAC 100 57
 CLH39_18450 NONE
        hslU 4015373 .. 4015392 + -13.6  -5.09426   GTCGGACATGAAAAA            GGGGCAGA TTTC TCTGCCCC             TTTTTTCACATTCCG 100 52
 CLH39_18465 NONE
 CLH39_18470 4017113 .. 4017138 + -19.1  -3.67622   CTGCAACTATAAAAA         TAGGGCCCTGC TTTA GCAGGGCCCTA          TTCCTTTTCAGGCTA 100 55
 CLH39_18485 NONE
 CLH39_18490 NONE
 CLH39_18500 4022821 .. 4022839 +  -5.4  -3.19463   AAGATGAATTGGGCA             TTCATTAT GAA ATGATGAA             TTAATAAATAATAAA  53 3
 CLH39_18505 NONE
 CLH39_18510 4024546 .. 4024571 + -20.5  -4.81083   CACACCATAAAAAAA         TCCCCGCCCTG AAAA CAGGGCGGGGA          TTTTTACTCCTTAGA 100 207
 CLH39_18535 NONE
 CLH39_18540 4030871 .. 4030891 +   -14  -4.33165   CAGACCCTTTACCCA            CGCCAGGC TTGCC GCCTGGCG            TTTTCGTGCCTTTAC 100 125
 CLH39_18545 NONE
 CLH39_18550 4032196 .. 4032223 + -12.1  -2.71144   GGATACGCTGGCATA        CATCTCCTTGC GTAGCA GCAAGGGGATG         TCATTACACAAGATG  70 220
 CLH39_18575 4036643 .. 4036675 + -11.9  -4.16842   GTCGGTGACTGGTCG      TGGGCTTGCCGGGCA GCA TGGCCGACAGGCCCG      TTTGTTCAAGCTGAA  95 356
 CLH39_18585 4038571 .. 4038588 + -14.1  -5.75945   ACACAGCGGCAAACC             GCCGCCC CAAA GGGCGGC              TTTTTTTTGGCCGCT 100 46
 CLH39_18590 NONE
 CLH39_18595 4041616 .. 4041629 +  -9.5  -4.68724   CAGGAAAAAGCAAAA               GGGGC TTCG GCCCC                TTTTGTCTTGCATAG 100 57
 CLH39_18605 4043244 .. 4043265 + -14.5   -5.4833   CTGCGAATACAAAAA           GCCCGATGA ATAT TCATCGGGC            TTTTTTATTGCCTGA 100 73
 CLH39_18610 4044033 .. 4044069 +  -3.7  -2.78596   TCCGTTTATTGAGCA    CCTGGTTCAGGCT GCCAATAAAAA AGCCTGAGTCCGG    TGTCATCCCGGACTC  44 79
 CLH39_18625 NONE
 CLH39_18630 4049014 .. 4049041 +  -8.4  -5.79526   GGTTCAGACGGGTGA        TAAGGGGCCTGT GAGA GCAGGTCCCTAA         TTTTTTTTACCGTAT 100 104
 CLH39_18635 NONE
        gltD 4055418 .. 4055452 + -20.2  -3.01712   GGTAGTACCAGTACA     CAAACAGCCAGCCG CGATAAA CGGCTGGCTGTTTG     TCTTCAAGCGAACGA 100 49
 CLH39_18645 4056457 .. 4056485 + -11.1  -5.33866   ACACCGCTTGATGTT        GAAAAGCCTGCTG ATT TAGCAGGCTTTTG        TTTTTTCTGCGTTTG 100 73
 CLH39_18650 4056881 .. 4056892 +  -7.2  -3.61715   ACCAGATTCTCACGT                GCGC GTCT GCGC                 TTCTTGCACCAGCTC  60 208
 CLH39_18755 4078638 .. 4078672 +  -3.6  -3.41527   GCGCGTGCTCCGGCT   TG-GC-CC-AGGCGGGC CGGC GCGCGCCTAGGAGCGCA    TTGTGATACGCATTC  50 56
 CLH39_18760 NONE
 CLH39_18765 NONE
 CLH39_18770 NONE
 CLH39_18775 4083249 .. 4083268 +  -2.8  -2.80344   CAAGGCAGGCGAATT            GTCATGAGC CTG GC-CATGCC            CTTGTTGAATCAGGA  41 19
 CLH39_18780 NONE
 CLH39_18785 NONE
 CLH39_18790 4085819 .. 4085830 +  -5.8  -3.14132   GGCCGTTGCTTATTA                GGCT GGTA AGCC                 TTGATGAGCACCACA  53 17
 CLH39_18795 4086615 .. 4086636 + -12.3  -4.07568   CCTAAGATCACATCG           CCAGCGTCCG AAA CGG-CGCTGG           TTTTGCCCGACAGAG  90 36
 CLH39_18825 NONE
 CLH39_18830 4093011 .. 4093033 + -10.5  -3.24925   AACAAATCCGAAATG           GCCGTGCGC AACCA GCGCACGCC           TTCGTCCTGTCGACT  68 140
 CLH39_18840 4094912 .. 4094929 + -11.3  -5.28176   TGCCCAATAGAAAAA             CGGCTCA TGCA TGAGCCG              TTTTTTCTGCATCAC 100 83
 CLH39_18865 4100633 .. 4100649 +  -4.3  -2.61645   CCTTAGACACTATGA              GACGCTG GTT CGTCGTC              GTCTTGCTTCTTATT  44 175
 CLH39_18870 4100955 .. 4101007 + -10.4  -4.42765   CTGCGAATTTGCCCC GGAGCACCGC-CCGCCCCGCGTCTG ACGC CTGACGCGCCGCGGCGCCCTGCTTC TTTGCTTTTTTGCAC  89 1
 CLH39_18875 4102618 .. 4102635 + -12.7  -5.08824   AGGAGTAAAAAAAAA             GCCCGCT GCAA AGCGGGC              TTTTTTCAATCAAGC 100 33
 CLH39_18890 4105644 .. 4105660 +  -4.3  -3.31248   CGGCCCACGGCACTT              CTGCCTG GAA CAGGAGG              TTGTACACGGTGTTG  47 325
 CLH39_18910 NONE
 CLH39_18915 4112738 .. 4112754 +  -5.8  -2.64794   GCAAATCATTATCGA              CGGGCT GCAAG AGCCTG              TGCTGTGACCTTCGG  50 1
 CLH39_18920 NONE
 CLH39_18925 4114709 .. 4114725 + -10.8   -4.6038   TAGCCGTGTTCTTCC              GGCGCG CATGA CGCGCC              TTTTCATTTCATATC 100 38
 CLH39_18930 NONE
 CLH39_18935 4116990 .. 4117009 +   -10  -3.25073   CTGCGCCTTCGTCTT            GCTGCCCTC CAA GAGGGC-GC            TCTTCATCTTGGGAC  70 56
 CLH39_18940 NONE
 CLH39_18945 NONE
 CLH39_18950 4119696 .. 4119717 + -10.9  -3.67597   GGAGCTGTGCACCCG           CT-CGGGCTG GGT CAGCCCGCAG           TTATTGCCTACCCCC  80 170
 CLH39_18955 4120418 .. 4120453 +  -9.8  -5.81412   GCTGGCCGGGCTTTC    GCAGGCTCACTCAATCA CTC TGAACGAGT-AGCCTGC    TTTTTTTTGCATCAA 100 75
 CLH39_18960 4121158 .. 4121173 +  -6.8  -4.15222   TGCCTGAGATGTCCT              GCCAGG CAAG CTTGGC               TTTCTTACGGAAAAT  71 238
 CLH39_18965 4122382 .. 4122392 +  -2.4  -3.73068   CAGCGTATCCAGGAC                 CCCG GCC CGCG                 TTCTTGAGTTCCACC  50 8
 CLH39_18970 NONE
 CLH39_18975 NONE
 CLH39_18980 NONE
 CLH39_18985 4125683 .. 4125693 +  -5.4  -2.94194   GCCATTTGGGACTTT                 GACA TGC TGTC                 TGTATACAGTTTGTC  49 24
 CLH39_18990 4126396 .. 4126430 +  -2.2  -3.03635   AGCCTACTTATTTAT     GTAATAGTTCTCATTA CCA TGATGAAATCTATTCC     TGTTGAACAAATTTG  42 49
 CLH39_18995 NONE
 CLH39_19000 NONE
 CLH39_19005 NONE
 CLH39_19010 NONE
 CLH39_19015 NONE
 CLH39_19020 NONE
 CLH39_19025 NONE
 CLH39_19030 4137738 .. 4137754 + -13.7  -5.45652   GCCAGACGCAAAAAA              GGGCGGA ATC TCCGCCC              TTTTTTATTGCCCAT 100 44
 CLH39_19070 4148213 .. 4148240 +    -7  -3.04792   AATCGCTCTGGCAGA        GCAGGCCTAA ATCCTGCG TTCGGCCTGC         TGTTCCCGCTACTGC  56 16
 CLH39_19080 4151085 .. 4151108 +  -6.7  -6.04953   CCTCCAGGAAAATAA          GCCCGGT AATCACAACG ACCGGGC           TTTTTTTGTTTCTGT 100 167
 CLH39_19085 NONE
 CLH39_19090 NONE
        trpD NONE
 CLH39_19100 NONE
 CLH39_19105 4155602 .. 4155632 + -11.9  -5.00616   CTGCTATTCAAGAAA       TACCCGCTGGCCT GTAAA AAGTCAGCGGGTA       TTTTTTGCCGCCCCA 100 57
 CLH39_19110 4157896 .. 4157913 +  -2.8  -3.41795   ATCCACTTGGCTCAA             CTAAAA CCAGGC TTTTAG              TTGTCCTCAGCCTTT  47 87
 CLH39_19115 NONE
 CLH39_19120 4158946 .. 4158956 +  -2.4  -3.49618   TTTCCGCACTTTGAA                 GTGC GAC GCTC                 TTAATTGTCTCAGGA  46 11
 CLH39_19140 NONE
 CLH39_19145 4163493 .. 4163509 +  -5.1  -3.33315   CAGCCAGCATCAGGC              GGGCA ACATCAC TGCCC              TTCTCCAGCTGTTCC  53 281
 CLH39_19155 4164913 .. 4164937 + -17.2  -4.09685   CCGCCTAAAACAAAA          CCCCCGCAAG GGATG CTTGCGGGGG          TTTTGAGGAATAAGA 100 197
 CLH39_19185 NONE
 CLH39_19190 4172884 .. 4172901 +  -9.8  -3.65046   AAGTCATAAAAAAAA             CCCGGC GCCAAG GCCGGG              TTCTTCAAATAAAAG  74 178
 CLH39_19200 4174981 .. 4174999 + -13.1  -3.92373   ACAATATGAAGATGA             GCGCCGC CACAT GCGGCGC             TTTATCCCTGCGCTA  87 63
 CLH39_19230 4179782 .. 4179799 +  -5.5  -2.81187   GCGAAGTTTCCGTTC             GCGCTCA CCGC TGATCGC              TATACTGCACTCTTT  48 12
 CLH39_19235 4180858 .. 4180881 +  -2.4  -5.00616   CTGGTGGCAAACCTT          GCCTTG-CTGG CTT TTGGACAAGGC          TTTTTTGGCACGCCC  70 213
        galU 4182003 .. 4182015 +  -4.9   -4.0044   TCGTCGAAGTTTGTT                CAATA CGG TATTG                TTTCTAATACTCATT  61 184
 CLH39_19245 4182342 .. 4182358 + -10.8  -5.67283   TTAGATCTCAAAAAA              GCCCGC TAAAT GCGGGC              TTTTTTATTTAACTT 100 59
 CLH39_19260 4185991 .. 4186003 +  -3.4   -3.3334   ACAATACGTGCAGTC                CGAT AAGTA ATCG                TTATGGCCTAGGATT  46 16
 CLH39_19265 4186883 .. 4186896 +  -3.7  -2.73903   CCGATCTGCCCAACA               CACGG CTGG CCGCG                CTTTAAGCAAGTTTT  44 6
 CLH39_19270 NONE
 CLH39_19275 NONE
 CLH39_19280 NONE
 CLH39_19285 NONE
 CLH39_19290 4192195 .. 4192214 +   -15  -3.70546   TTTACGTTCCTTCCA            GGACGGCC ATCC GGCCGTCC             TTGTGCTTTTCGTCA  95 51
 CLH39_19295 4193507 .. 4193521 +  -7.1   -3.8211   CTTGGACAGTTTCTC               GGCGT AGGTC ACGCC               TTCTTCTGGCTGGGG  66 357
        dprA 4196016 .. 4196026 +  -3.2  -2.79831   GGACGCCAGCCCTGG                 CCTT CAA GAGG                 TATCATGACGATTAC  41 61
 CLH39_19315 NONE
 CLH39_19320 4197676 .. 4197696 + -11.1  -4.70659   TCAGTCAATAAAAAA            GCAGCCCTC AAA GAGAGCTGC            TTTTTGCATATCGCG 100 227
 CLH39_19365 4208507 .. 4208526 +  -5.6  -3.05384   CCTGGCTCAAGCGTT            GACGGGCG CCTT CGTCCATC             TTGGGTGGGCCCACC  49 231
 CLH39_19380 4211631 .. 4211653 +    -7  -4.82901   CCATAAGCTCATAAG           GCGGCGTA CCCGGTT TATGCCGC           TTTTTATGAGCAAAA  82 35
 CLH39_19385 NONE
 CLH39_19390 NONE
 CLH39_19395 NONE
 CLH39_19400 NONE
 CLH39_19405 4216146 .. 4216160 +  -2.1    -3.737   ATTCCAGCTGCCGCT              GACTGC TGAG GC-GTC               TTTGCTCACCCGTTA  50 247
 CLH39_19435 4225232 .. 4225242 +  -3.2  -2.64243   GTCAATATTTGCATA                 TCGT ATA GCGA                 TCATATACACTATAC  40 132
 CLH39_19440 NONE
        higA 4225887 .. 4225915 +  -5.3  -4.59773   AATAAATCGATGTGA       GCTACACGGCGT ACTCGG ACGCCATGT-GC        TTTTTCGGCCTGCAA  73 62
 CLH39_19455 4229029 .. 4229055 +  -2.9  -3.35867   CGCCTGCTCCAGCGG         CAGGCCAGGGA ATAGA TCCTTCACCTG         TTGCTTCAAAGTTGC  47 437
 CLH39_19470 4232066 .. 4232079 +  -9.5   -5.4505   CGCACAACAAAAAAA               GGCGC CGTA GCGCC                TTTTTTCTTCAAGCC 100 221
 CLH39_19485 NONE
 CLH39_19490 4236202 .. 4236224 +  -2.6  -3.37257   AACGGCTCTTGTTTT           GGAGGCCTTG TGA TGAGTCCTTC           TGTATTTCGTTGTGT  46 13
 CLH39_19495 NONE
 CLH39_19500 4236811 .. 4236826 +  -3.2  -3.51924   CAAACAGCAAGGTGC              TTGCAC CCCT GCGCAA               TTATCTGCCTGCGGC  49 87
 CLH39_19520 4241728 .. 4241741 +  -9.5  -3.21912   TACCGATAAGGGCAT               GCGCC AACA GGCGC                TTGGTAAATTGCCAC  66 500
 CLH39_19590 4254020 .. 4254041 +  -4.4  -2.71144   CAAAAGCGTAAACCT           GCCTTGCT GACTTA AGCAAAGC            TGATTACACACCATC  44 11
 CLH39_19595 4254456 .. 4254468 +  -4.7  -2.69964   TATAAATACAAAACA                GCAGC CTT GCAGC                TAATGTGATTGGCGA  44 48
 CLH39_19600 4255275 .. 4255299 +    -7  -3.15056   GCCTGCGCCAGTTCC          TCCGGCAGGC CTTGC GCCCGCCAGA          TATTCAATTCCCGCT  54 197
 CLH39_19630 4262016 .. 4262034 + -13.1  -3.53012   GCTGTGCCTGCCAAA             GGCGGGC ACAGC GCCCGCC             TTTGAACCGAGCACA  83 54
 CLH39_19635 4262657 .. 4262677 +  -5.3  -3.29511   GGCAGGGACGGTATT            GGCCAGCGT GTC GCGTTAGCC            TTGTGCACGCATCAG  53 7
 CLH39_19640 4264403 .. 4264431 +  -6.7  -5.18643   TCTGTCACAAGAGCA        GGGCCGACATT TCGCTAC AATGACGGCTC        TTTTCTTTTAATTAC  91 42
 CLH39_19645 4265207 .. 4265227 + -15.5  -5.90981   AAGGACAATAAAAAA            GCACCCGTT AGT AACGGGTGC            TTTTTTTTGGTCTGA 100 114
 CLH39_19665 NONE
 CLH39_19670 4269125 .. 4269161 + -11.6  -2.62184   CAGCCCTGATCACGC   GTGACTGCGCGCCGG ACCACAAA CCGGCGCGCA-TCCC    TCGTGTGGAGACACC  70 32
 CLH39_19675 4269693 .. 4269712 +  -5.8  -4.12188   AGCATCAAGGAGTTC            TGA-CATGG ATT CCATGCTCA            TTTTCAGCCTGATGA  66 23
 CLH39_19680 4271005 .. 4271019 +  -8.5  -5.79588   CTTTAAAAAATAAAA               CCCGC TTCAT GCGGG               TTTTTTTAATTTTCC 100 35
 CLH39_19685 NONE
 CLH39_19690 NONE
        leuC NONE
        leuD 4275672 .. 4275685 +  -3.9  -5.07053   CGACTACTCCGCCTA               CTTAT ACCC ATAAG                TTTTTTAGGGTCGTT  78 416
 CLH39_19705 4277996 .. 4278027 +  -7.2  -6.06723   CTAACTCCGCTTTTG      CAGGGCCTGTTCAT GCGT GTATGCAGGCCCTG       TTTTTTTTTGACAGG 100 91
 CLH39_19715 4280158 .. 4280168 +  -6.8   -2.6186   GGTTTCAGCCCCGCC                 GCTG AAG CAGC                 CTTGTCGCGTTCCGT  52 116
        leuA 4282203 .. 4282219 + -10.8  -4.72272   TCGCTCTGCCCGCAA              CCCGCC CACAA GGCGGG              TTTTTCGTGGGCGGG 100 139
 CLH39_19745 4288068 .. 4288092 + -14.3  -3.89695   TGTCGCGCCTTCCAT          CTGGGGCGTGT TCC ACACGCCGCAG          TTGTCTTTCTACCAA  93 102
 CLH39_19755 4290615 .. 4290625 +  -6.8  -2.74999   TTCCGCCATTGCACA                 GGTC ATA GACC                 TCATCTTCCCCATTA  53 76
 CLH39_19760 4291319 .. 4291369 +   -30  -4.19483   CTGGCAGAGCCATAC CGCCAAGGGCCCTCAAGACTGG TTTTGTT CCGGTTTTGAGGGCCCTTGGCG TTTCTATATCTGTGA 100 49
 CLH39_19775 4294437 .. 4294450 +  -5.3  -2.64735   AACCCATATATATGA               CGTTT ACGT AAACG                TAATATAAATACAAT  47 46
 CLH39_19780 NONE
 CLH39_19785 NONE
 CLH39_19790 4298742 .. 4298765 + -18.2  -4.46581   TTTAAAGCAAGCTCA          TCAGCCGGGC TGCG GCCCGGCTGA           TTTTATGGGCTTTTC 100 36
 CLH39_19795 4300478 .. 4300516 +  -8.6  -3.72576   TTGCCTGCCGGGTGG   CCGCCACTGCCCGCAGCC TGG GACTGCGTACCGTTGCGG   TTTACTCCGACGCGG   0 92
 CLH39_19770 4292761 .. 4292780 -  -9.2  -2.79796   CTCTACGCTACCACA            GGCGAGCG GGCC CGGTCGCC             TCTGCCAACAGTCGC  62 77
        metC 4291483 .. 4291501 -  -8.1  -3.76224   GGGCCATTTATTAAA             GCCAAGG TGCGT CCCTGGC             TGGAGCAGTCAGTGA  70 46
 CLH39_19740 4283763 .. 4283786 - -14.6  -4.08651   AGCTTAAGCAAAGAA          GGCCTGCCAA ATTG TCGGCAGGCC           GACATTCCAGGGACT 100 39
 CLH39_19735 4283355 .. 4283370 -  -8.2  -6.28967   CAGAAAGAAAAAAAA              CCGGCC CAAG AGCCGG               TTTTTGTTTGCCTTG 100 48
 CLH39_19730 4282435 .. 4282445 -  -6.8  -2.97747   GCGGCACAGTACAGA                 TGGC TGT GCCA                 ATATGCCTCTAAACG  54 73
 CLH39_19725 4281778 .. 4281789 -    -3  -3.15249   GACAGCGGCCAGCAA                TTCA CGAT TGAA                 GTGGATGTGGAGCAC  43 474
        rpoN 4278058 .. 4278079 - -10.1  -3.35679   TCTTGTCAGCCAGAA           CGGTGAGCC TCTG GGCCCACCA            AGCATCTTTGAGCTG  72 57
 CLH39_19660 NONE
 CLH39_19655 4265997 .. 4266010 -  -9.5  -3.98256   TCCTGATCAAAAACA               CGCGC TTAG GCGCG                GCAAACAAGACGGCC  80 17
         bfr 4265197 .. 4265236 -   -19  -2.72379   GGAAGCTGCCAAGGA  CAATAAAAAAGCACCCGTT AGT AACGGGTGCTTTTTT-TTG  GTCTGACCACACAAA 100 44
 CLH39_19625 4259483 .. 4259498 -    -6  -3.30798   CAGAATTAATCAATA              CCCAGC AGGA GCGGGG               GTCGCAGGGATATCA  55 4
 CLH39_19620 NONE
 CLH39_19615 NONE
 CLH39_19610 NONE
 CLH39_19605 4254720 .. 4254743 - -12.4  -3.53224   GAGCCTGCCGGCAAA          GCGGCCCGTG TACT CACAGACCGC           CTCTGGCCACGCGGC  77 397
 CLH39_19585 4251413 .. 4251437 -  -2.7  -4.02736   AAGGCAGATCAGAAA          GCGGGGCGT CTAGCCT AGGCCCTGC          ACAGGCGACGCGCCA  56 15
 CLH39_19580 NONE
 CLH39_19575 4249853 .. 4249866 -  -5.2  -2.82668   CCTCAAAGGCTAAAT               CGCG AAGACA CGCG                TGTCTGGCGGGGGTA  48 6
 CLH39_19570 NONE
 CLH39_19565 NONE
 CLH39_19560 NONE
 CLH39_19555 NONE
 CLH39_19550 NONE
 CLH39_19545 NONE
 CLH39_19540 NONE
 CLH39_19535 NONE
 CLH39_19530 NONE
 CLH39_19525 4241394 .. 4241405 -  -7.2  -5.06414   TGCCGCCAATAAAAA                GCCC CCTC GGGC                 GGCAGCAAACCGAAA  91 70
 CLH39_19515 4239333 .. 4239363 - -14.8  -4.77036   TGGCACCATCAAAAA       GTGGACACTGTCCC AAG GGCACAATGTCCAC       TGTCAAACTACGTAA 100 54
 CLH39_19510 NONE
 CLH39_19505 4237296 .. 4237323 - -14.2  -5.67063   TCGAGCATAAAAAAA        CCTCAGTTTGGC ATCT GCCGAACTGAGG         TTTTTTTGTTTTGGA 100 115
 CLH39_19480 4233096 .. 4233116 -  -3.9  -3.64703   GTGGGCTTATTCAAA            GTCATTGTG AAG CACATTGGC            TCAAACACGTGAGCC  52 82
 CLH39_19475 4232066 .. 4232079 -  -9.5  -5.88565   CGCACAACAAAAAAA               GGCGC CGTA GCGCC                TTTTTTCTTCAAGCC 100 49
 CLH39_19465 4230124 .. 4230168 -  -5.7  -3.35371   TAGAGCGCCAATGAA TAGTTGGCGCATTCCATAACC CTG GGTTATGGAATCAGCGTTCTA CTCAATCCGGAAAAC  57 27
 CLH39_19460 4228639 .. 4228668 - -13.7  -5.79526   ATACGTCAAAAAAAA       TGGGCAAGCTTCC AAGG GAAAACTTGCCCA        TCTCCATCTACTGGT 100 173
 CLH39_19450 4225564 .. 4225579 -    -4  -3.76141   ATCACTAGGAAAACA              TTATGC GTAT GCACAA               CCCATCCCACCCCGG  54 407
 CLH39_19430 NONE
 CLH39_19425 NONE
 CLH39_19420 4219907 .. 4219937 -  -8.3  -3.61267   AACTCCAAACCAGAA      GCAAG-ACCACTGC CGGT GCGGTGGCACTTGC       GACCAGGCCAGCGTA  67 67
 CLH39_19415 4217070 .. 4217092 - -15.6  -4.85894   AAACCAAATAGAAAA           TGGCCCGCTA TTG CAGCGGGCCA           GACATCCAGAGCCAT 100 79
 CLH39_19410 4215903 .. 4215916 -  -3.7  -3.03443   GCACGATGAGATAGA               GGCGG CTTT CCGCG                ACTATTAAGGTTCGG  46 232
 CLH39_19375 4209325 .. 4209337 -  -6.2  -2.87564   CCATGCGTGTAGACA                GCGC TTTTG GCGC                TATTTTTTTAAGTTT  52 121
 CLH39_19370 4208151 .. 4208191 - -11.8  -3.15996   CATTACCCAGGAAGA  GATCGGCTACCTGGCGCG TGTGT CGCGCCAACGAGCCAACC  AGGCCCTGCGCCAAC  73 165
 CLH39_19360 NONE
 CLH39_19355 NONE
 CLH39_19350 NONE
 CLH39_19345 4202605 .. 4202623 -  -8.1  -2.71364   CCATTTGTCTAAGTA            CCCCGTCC CGAT GG-CGGGG             CTGTTGTTGTAATGA  59 56
 CLH39_19340 4201219 .. 4201242 - -13.8  -2.54896   TCCCCACGCAATGCA          GTGCCCAGGG CGAA CCCTGGGCGC           CTGGGTTTAGCCTTC  77 32
 CLH39_19335 4200369 .. 4200384 -  -4.6  -3.05463   ATCCTTGGGAGTTAA              GCCAGC CAGC GCTTGC               GTCGTCGATAAAATT  48 6
 CLH39_19330 4198736 .. 4198746 -  -2.4  -3.91473   AGAAACTGGCACAAA                 GCGC ATC GGGC                 TCTCCTCAAAGATAT  53 110
 CLH39_19325 4197676 .. 4197696 - -13.3   -5.4833   TCAGTCAATAAAAAA            GCAGCCCTC AAA GAGAGCTGC            TTTTTGCATATCGCG 100 54
 CLH39_19305 4194130 .. 4194150 -  -5.3  -2.87725   CGGCAAAAACAATAC            GCATGGCGA CTA TTGCCCTGC            CTTCAGTGCTTCACG  49 14
 CLH39_19300 4193160 .. 4193174 -  -2.8  -3.28712   GTGGCGGCGCCAGAA               CAGG TCTGGCG CCTG               AGTCCAGGTGGCAAG  46 43
        waaC 4183879 .. 4183908 - -11.5   -4.0641   TGTCAGGCAGACAAA       GGGCCTGCA-CC TAGGCGG GGCTGCAGGCCC       CGTAGCATCGCGTAT  86 92
 CLH39_19250 4182342 .. 4182358 - -10.8  -5.07567   TTAGATCTCAAAAAA              GCCCGC TAAAT GCGGGC              TTTTTTATTTAACTT 100 131
 CLH39_19225 4178212 .. 4178234 -  -9.8  -4.55798   GATTTGAAAGCAAAA           CCCGGCTTAG GTT CCAAGCCCGG           CCAAATGACGGCTGA  90 9
 CLH39_19220 NONE
 CLH39_19215 NONE
 CLH39_19210 NONE
 CLH39_19205 4174981 .. 4174999 - -13.1  -2.81181   ACAATATGAAGATGA             GCGCCGC CACAT GCGGCGC             TTTATCCCTGCGCTA  77 42
        lipA 4172884 .. 4172901 -  -9.8  -5.97575   AAGTCATAAAAAAAA             CCCGGC GCCAAG GCCGGG              TTCTTCAAATAAAAG 100 72
 CLH39_19180 NONE
 CLH39_19175 NONE
 CLH39_19170 4168384 .. 4168425 -  -6.7  -3.28712   TCGTGGGTTGCATAA CCCAACGAGCAGTATTCTT GAAA AAGAACACTCTTCGTTGAA  TCTAGCGCCAGGTCA  58 110
 CLH39_19165 4165123 .. 4165157 -  -5.8  -2.94759   CAATTGGAAGAAGCA    CACCGCTAG-CGATC AGTACG GATCAACTAGCAGCG     GTTACGAAGGTGTCA  52 97
         rrf 4164908 .. 4164942 - -23.1  -4.07568   TGTCGCCGCCTAAAA     CAAAACCCCCGCAAG GGATG CTTGCGGGGGTTTTG     AGGAATAAGAGCTTG 100 36
 CLH39_19150 4162943 .. 4162960 -  -3.3  -2.55712   GGATACGGACAATAC             CGAGCAC ACGC GTGCCCT              CTTGCGCCTTATTCC  40 241
 CLH39_19135 NONE
 CLH39_19130 4159418 .. 4159438 -  -7.5  -4.09739   GTAATCGGCTTAAAA            CACCCGCCA CAA CAGCGGGTA            AACGGGGAGTCGTTA  71 66
 CLH39_19125 4158872 .. 4158898 -   -13  -3.90291   ATTTCCTGAATGAAA         CTGGGCAGGCTT TGC AGGCCTACCCAG         GAGCGGAGATTTTGG  87 93
 CLH39_19075 4148201 .. 4148215 -  -6.4  -2.71924   CATGCGCGCGCAAAT               CGCTCT GGC AGAGCA               GGCCTAAATCCTGCG  51 59
 CLH39_19065 NONE
 CLH39_19060 NONE
 CLH39_19055 4144523 .. 4144555 -  -3.4    -3.281   TGCTAATCGACAAGA     CCCTAGCG-GC-CTTA GAA CAAGAGCGCGCCGGGG     CTGACGCCGGCAGCA  46 4
 CLH39_19050 4143718 .. 4143733 - -10.4  -5.37043   ATGGGACATAAAAAA              CCCGCT CGAA AGCGGG               TTGTTCTAGCTCAAG 100 55
 CLH39_19045 4141716 .. 4141737 - -15.9  -4.67353   CCAGGTACGCAAAAA           CCGACCGTG TCAC CACGGTCGG            CCTGCATGGAGGCCC 100 123
 CLH39_19040 4140087 .. 4140106 -  -4.2  -3.19331   GATCAAAAATAATCA            GCG-CACCC CTT GGCTGGCGC            GAGGCGGCGCCATTT  50 42
 CLH39_19035 4138000 .. 4138014 -  -7.1  -2.87944   CAGCATCAGATTAGA               CCTGC TCAGT GCAGG               TAGCCTCCTATCAGC  54 447
 CLH39_18905 4109727 .. 4109770 -  -3.7  -4.66609   GATCTGATTGAAAAA GGCGGCGTCCTGCGGCAAGC GCCAG GCTTTCAGCCACACGC-GCC GTATGCCTGCCCGGT  68 337
 CLH39_18900 4106725 .. 4106746 -  -2.9  -3.07655   TGTCTGAAAAAAGAT           CAGCGTCTGC CCG GC-GACGGCG           TACCAAAAGCCTCGC  44 3
 CLH39_18895 4105259 .. 4105283 - -14.3  -3.84451   CGGCTGAAAGCCAAA          GCGCCACTGCA GAT CACAGTGGCGC          TCAGGAAAACAATCC 100 93
 CLH39_18885 4103672 .. 4103704 -  -3.6  -4.30448   AAACGCAATCCAAAA     CGTTTT-ATCCATCC GTTT AAACGGATAAAAACG      AGAATTCAAAAGTAA  64 110
 CLH39_18880 4102618 .. 4102635 - -12.7  -6.17184   AGGAGTAAAAAAAAA             GCCCGCT GCAA AGCGGGC              TTTTTTCAATCAAGC 100 35
 CLH39_18860 NONE
 CLH39_18855 NONE
 CLH39_18850 NONE
 CLH39_18845 4094912 .. 4094929 - -11.3   -5.0916   TGCCCAATAGAAAAA             CGGCTCA TGCA TGAGCCG              TTTTTTCTGCATCAC 100 37
 CLH39_18835 4092775 .. 4092795 -  -5.4  -3.99678   AGGGCTACAAGGAAA            TTCGGCTA GGCTA TAGCCGAG            GTGAAGGCAGCCCGG  64 213
 CLH39_18820 4090597 .. 4090623 -  -3.7  -2.56288   AAACTACTTAAGGCA         GGCCGAC GGATTCAGGCTAA GTCGGCC         GGGTTTCCAGAAAAA  43 15
 CLH39_18815 NONE
 CLH39_18810 4088080 .. 4088091 -  -4.4  -3.34344   TTAGCTGGCAAGCAA                GACA CTGA TGTC                 AGCGGTAGGTACGTC  52 75
 CLH39_18805 4087611 .. 4087624 -  -3.8  -2.79183   GTGATGCCCATCAGA               CCTG ATACTG CAGG                TGAATCAGCGGGTAT  44 7
 CLH39_18800 4086392 .. 4086406 -   -10  -3.14881   CAAGTGGGGCAGCAA               CCCTTG CTG CAAGGG               CCGAACCAGAACCCG  66 377
 CLH39_18750 4076423 .. 4076434 -  -3.6  -3.02263   ATACGCGGCGCAATA                CGCG AACA CGCA                 CATTTCCCGACAGTC  45 126
 CLH39_18745 4075330 .. 4075341 -  -7.2  -3.63092   ATAGCTAGAGAAACA                GCGC GAAG GCGC                 TTTTAAGGACGGGAG  64 28
 CLH39_18740 NONE
 CLH39_18735 NONE
 CLH39_18730 NONE
 CLH39_18725 4072160 .. 4072202 - -25.8  -5.63103   GCGCAAGCAAAAAAA CCGGGTAAATAACGCCGGGG CCC CCCAGACGTTATTTACCCGG CAAATCCAACAAATG 100 67
 CLH39_18720 4071598 .. 4071608 -  -6.8  -3.14564   TCATGCTCCCATGAA                 GTGC CTG GCAC                 TCAATAGTTAGTGCT  56 75
 CLH39_18715 4070709 .. 4070721 -  -4.7   -3.1811   TGCTTTAGAACAAAT                CCAGC TGG GCGGG                CATGCTGGCCTGGAT  48 2
 CLH39_18710 4069039 .. 4069070 -  -7.2  -3.34398   TTGTCTCCTCAAAGA      GGCGCGAACGGTAT CGTT ATTGTGTTCGCGCC       TTTATCCCTAGCTAG  62 37
 CLH39_18705 4068107 .. 4068122 -  -3.2  -2.68071   GTTAATTTAAATTTA              GACTTC ATTG GATGTC               TCTCCTCATGGGCGT  40 49
 CLH39_18700 4066947 .. 4066962 -  -6.1  -2.85351   CGGGTCCATATCAGA              CACCC CCAACT GGGTG               GAACTGAACTTGCAA  51 5
 CLH39_18695 NONE
        mauD NONE
 CLH39_18685 4065160 .. 4065171 -  -2.2    -4.015   CTATGCAGGAAAGAA                CTGG CGTC CCAA                 GGACCGTTCTTCCCG  55 69
 CLH39_18680 NONE
 CLH39_18675 4063462 .. 4063486 -  -7.1  -4.08706   CCTCTAGGATAGAAA          TCCGACCCGTC TGC GATAAGTCGGA          GTTGCGTCTACGTAG  69 47
 CLH39_18670 NONE
 CLH39_18665 4061442 .. 4061476 - -21.6  -3.28712   TGTCTGTGTGCATAA     CTTTGCGCACAAGCTG CGA CAGCCCGTGCGCAAAG     ACTATCAAACGCTGT 100 30
 CLH39_18660 NONE
 CLH39_18655 4056651 .. 4056668 - -12.7  -4.90906   GCAGAACATGAAAAA             GGCCAGC AAAA GCTGGCC              TGCAGAACTACGGTG 100 93
 CLH39_18620 NONE
 CLH39_18615 4044058 .. 4044088 - -18.4   -5.4505   GCTGCCAATAAAAAA       GCCTGAGTCCGG TGTCATC CCGGACTCAGGC       CGACTCATAAGCTTG 100 98
 CLH39_18600 4041889 .. 4041903 - -11.4  -5.77988   ACAGACACAAAAAAA               GCAGCC TTT GGCTGC               TTGCATCGCGACACT 100 107
 CLH39_18580 4035872 .. 4035889 -  -3.4  -3.53012   GGCGCGGCGTCCAAA             TCGACC AGCCAG GATCGA              TTCAGAACTCTGGGC  49 378
 CLH39_18570 NONE
        metW NONE
 CLH39_18560 NONE
 CLH39_18555 NONE
 CLH39_18530 4028769 .. 4028784 - -11.8   -5.4433   ACACACAAATAAAAA              CCCCGC CGTA GCGGGG               TTCATCATGTCCAGC 100 52
 CLH39_18525 4026616 .. 4026657 -  -8.7  -5.58209   CCAAAGCGAAAAAAA GCAAGACACAGCGCAAAGTG CCT CACATTGCGGCGAGTC-TGC GGGCCTTACAGCAAA 100 335
 CLH39_18520 4024745 .. 4024762 -  -4.8  -2.72991   TCATACCCTCAAGCA             CGAGCC GAGGCT GGCTCA              CCTTGTTTCGACTCC  45 1
 CLH39_18515 4024546 .. 4024571 - -20.5  -5.69473   CACACCATAAAAAAA         TCCCCGCCCTG AAAA CAGGGCGGGGA          TTTTTACTCCTTAGA 100 36
 CLH39_18495 4021186 .. 4021202 -  -2.1  -4.08216   CGACTCGCGTTAAAA              CGGCACC CTG AGCGCCT              CCGTCCGGCCACCTC  55 3
 CLH39_18480 NONE
 CLH39_18475 4017113 .. 4017138 - -19.1  -4.98255   CTGCAACTATAAAAA         TAGGGCCCTGC TTTA GCAGGGCCCTA          TTCCTTTTCAGGCTA 100 33
 CLH39_18460 4015530 .. 4015543 -  -9.5  -5.58454   CGGAGATGAAAAAAA               CCGGG CGAA CCCGG                CTTTTATCAACCCAC 100 51
 CLH39_18430 NONE
 CLH39_18425 NONE
 CLH39_18420 4007472 .. 4007490 -  -9.5  -3.57144   GTGGTCAGTGGCAAA             GGCGGCA AGACG CGCCGCC             TGCCTGTCGGAGAGA  69 431
 CLH39_18390 4002073 .. 4002091 -  -4.5   -3.7795   TCAAACTGCAGCAAA            GCGCCGCC CGCA AGCGGC-C             TTTGCCTATCCGCAC  56 46
 CLH39_18385 4000319 .. 4000334 - -10.4  -3.38991   AGGGCTCCAAGAATA              GGCGTC CGAA GACGCC               GGTGCGTTTTAGTAG  75 34
 CLH39_18380 NONE
        metF 3999082 .. 3999102 - -10.4  -5.60993   CGCTCCATAAAAAAA            CCCGCCAA GACCT CTGGCGGG            TTTTTTATTGAACAT 100 49
 CLH39_18365 NONE
 CLH39_18360 3995039 .. 3995060 - -10.9  -4.35042   CTCAGCAGAAAAGAA           TAAGCGGCC TATT AGCCGCTTA            TTTTCTAAGTGTGCA  89 63
 CLH39_18345 3992701 .. 3992737 - -16.7  -2.91735   GCAACACCGGATACA    TGGTTTTGAGCCAAGCG CCG CGCTTGGCTCAAAACTG    CACATGCTTTACTCG  95 34
 CLH39_18330 3986833 .. 3986858 - -16.2  -5.64274   CCAGGCATAAAAAAA         CCCCACCTGC TTCAAG GCAGGTGGGG          TTTTTACAAGCAGAA 100 48
 CLH39_18325 3986133 .. 3986145 -  -6.2  -2.52464   TTGTGTTTCAAGCCA                GCCC TGATC GGGC                TTTTTTTGCTTGTTG  49 103
 CLH39_18320 3985059 .. 3985070 -  -3.6  -3.19642   AGGATTATTGAGCAA                GCGC CGCA GCAC                 GGGTGACCAGATCAG  48 3
 CLH39_18315 NONE
 CLH39_18310 NONE
 CLH39_18305 3981704 .. 3981733 - -10.7  -5.63103   CGCTAAGCAAAAAAA       CAGTGCCACC-CGC AAG GAGAGGTGGCACCG       CACAATCAAGGTGGT 100 71
 CLH39_18295 3979830 .. 3979856 - -13.7   -4.8622   GTGGGCAATTAAAAA         CGCCCTTAGGC TGGAT GCCTCAGGGCG         TTTCTCTATATTCGG 100 99
 CLH39_18290 3978253 .. 3978278 - -14.1  -5.95539   TTCCAAATAAAAAAA         CAGGCCAGGTAC ACC GT-CCTGGCCTG         CTCAATTTTTTGGTT 100 56
 CLH39_18285 3977847 .. 3977862 -  -4.6  -3.15592   AACTTTGAGGAAAAT              CCCCCA GCAG TGGGGC               CATGACTTGAATCGC  48 74
 CLH39_18280 3976526 .. 3976579 - -18.5  -2.63326   TAAAGAGAGATCAAG GTTATCCATATGCGCTATGTTAGCT GAGC AGCTAACATAGCGCAACTAAATAAC TTAGGCGTGGAGGCA 100 156
 CLH39_18275 NONE
 CLH39_18270 3974127 .. 3974143 -  -5.7  -3.54543   ACCCAGCTCGGGAAA              GGGGCTG GCT CTACCCC              GTCTCGCTGTACGAT  59 387
 CLH39_18265 NONE
 CLH39_18260 NONE
 CLH39_18255 3971296 .. 3971314 -    -3  -3.14944   CAGCACGATATTGAA             CGTCTCAC GGC GCGAGCCA             TTGTCAGGCAAGCCG  44 393
 CLH39_18245 3970357 .. 3970378 -  -5.2  -4.07568   TCGTGTTGGTTAAAA           GTACAACC GAAGTT GATTGTAC            TTACGGTTAATGCAA  63 54
       virB5 NONE
 CLH39_18235 NONE
 CLH39_18230 3968628 .. 3968650 -  -4.8  -2.92293   AAGCCGAAGATGACA           TTTGTCGCGG TGT CCGACACAAA           GGTGTTAAGCATCGC  47 84
 CLH39_18215 NONE
 CLH39_18210 NONE
 CLH39_18205 NONE
 CLH39_18200 3960950 .. 3960969 -  -5.6  -3.23274   GGGGCCAGAATTGAA            CCGGCACGC CTT GCG-GCAGG            GGATTTTGAGTCGGT  53 251
 CLH39_18195 3959398 .. 3959429 - -15.2  -5.65513   GATTAAGCAAAAAAA      GCAGACGACACGTC TACG GGCATGTCGTCTGC       TTGCCTTCTACCGCA 100 50
 CLH39_18175 3953252 .. 3953270 -  -7.4  -2.75039   GACACAGGGCAAGCA             GATCGGAG TAG CTGCGATC             ATCCAGCCAGCGACG  56 416
 CLH39_18165 3951460 .. 3951476 -  -3.6  -2.52464   CTCGCCTCCAAGCTA              CTAGCC TGTCG GGCGAG              GCCATGAACAGGCTG  42 44
 CLH39_18160 3951058 .. 3951087 -  -8.5  -3.99324   GCCCAGGAGCAGAAA       GGGCAAGCGTGTA GCAT CAAGCGCTTGCCC        CCCTTCTAGTCCGGG  74 31
 CLH39_18145 3947386 .. 3947406 - -11.1  -3.29263   ACACTGGCCCCACAA            TCGGCCAAG GCT CTGGGCCGA            GCTTCATTTACGGCA  71 477
 CLH39_18125 3944269 .. 3944285 -    -3  -2.87319   TTCAACGCATCAAAC             CCGTGTT TCCG AAC-CGG              TACAGATCTGGCTGC  42 132
 CLH39_18120 3943111 .. 3943133 -    -2  -5.30616   GCACTCAAACAAAAA           GATCAGTA GGCTCAT TACTGAAC           GCCAGTCTCACCCCT  78 102
 CLH39_18115 3942474 .. 3942486 -  -4.8  -4.08317   CAACGCTAAAGGAAA                CTGG CTGAT CCAG                CGTGTTAAAGACTAA  61 45
 CLH39_18050 NONE
 CLH39_18045 3923954 .. 3923964 -  -8.2  -3.53012   GCTTGCCTGTGTAAA                 CCGG CTG CCGG                 CAAGGTCTGGCCAGG  67 56
        kynU NONE
 CLH39_18030 3920635 .. 3920654 -   -15  -5.75945   ACGCTGCAAAAAAAA            GCCCCTGC CAAG GCAGGGGC             TTGTTCAAACAGAGC 100 57
 CLH39_18025 3919287 .. 3919301 -  -6.4  -3.72743   GATCAGGAAAACGAA               CAGGCA CGC TACCTG               GGTGGAGCGTGCGCT  62 106
 CLH39_18020 3918613 .. 3918630 -  -2.5   -3.6392   GATATGAAAGCACAA             GGCCTGG TTTT CCGGTCC              CGATCAGGGATGAAC  47 29
 CLH39_18015 NONE
 CLH39_18010 3916088 .. 3916134 -  -8.1  -3.83502   GACGCTCAGATGAAA GTTTTATGACGCCCAAATGTTC ATAT GAACATTTGGGCG-CTCAATTC AGACAGCATTCGCAC  72 54
 CLH39_18005 NONE
 CLH39_18000 NONE
 CLH39_17995 NONE
 CLH39_17990 NONE
 CLH39_17985 3911091 .. 3911108 -  -3.5  -4.09685   GTGCAGGTCCGAAAA             CTGGATGA TCT TCATC-AG             AATTCCTTAACGAAT  59 32
 CLH39_17980 3910201 .. 3910238 -   -17  -3.42395   GCTAGCAGGCAAACA   GCCCCCGTAACCTGGA AAATAA TCCAGGCCTCGGGGGC    CACTGCGGGTTTGCT 100 83
 CLH39_17960 3904878 .. 3904913 - -10.4  -2.53876   TTTGAGCTTAACCCA    GAACCA-TGCCGGAAGC GAA GCCCCCGGCGCCGGTTC    TACACCTGCTGTTTC  67 45
 CLH39_17955 3904520 .. 3904533 -  -9.5  -5.42259   GCATGCGCAAAAAAA               CCCGC CGTA GCGGG                TTTTTTATTGGCCTG 100 47
 CLH39_17950 3903991 .. 3904005 -  -2.1  -2.79878   CGCATCGACCCAAAT               CTGCA TGGGT TACAG               GCCTAGAGCTTGAGC  39 20
 CLH39_17945 NONE
 CLH39_17940 3903015 .. 3903035 -   -14  -2.60194   ACGGGGGCAAGCAAT            CGCGCGTG AGCGA CACGCGCG            GATGGAACGGTTTGT  74 79
 CLH39_17910 3896970 .. 3897001 - -11.6  -3.18264   TTGCTCATCCAGCAA      CTGGCCTTGTTTAG AAAT CAGAACAAGGCCAG       TTCTGCGTATGCTGA  74 70
 CLH39_17890 3891910 .. 3891926 -  -5.1  -2.71731   TGGACCGTGCAATCA              CTGGC ACAGGAA GCCAG              GATGTCACGCAGCGC  44 252
 CLH39_17880 3890595 .. 3890618 - -11.7  -4.70772   ACAGACGCAAGAAAA          CCCGCCTGC ATATCA GCAAGCGGG           CTTCCATATCGATGC 100 41
 CLH39_17870 3889201 .. 3889216 -  -3.9  -3.08438   CACCATATTTCAAGA              GACGG ATCAGG CCGCC               GGCCCGGATGTCAGG  46 16
 CLH39_17865 3887127 .. 3887154 - -14.2  -4.73448   ATACAGATGCAAAAA        GCCCCGATCATC GTAA GACGATCAGGGC         TTTACCTGATTAGTA 100 79
 CLH39_17845 3883698 .. 3883713 - -11.8  -5.55664   TCAGGACGAAAAAAA              GCCCGC TTAC GCGGGC               TTTTTTCTTGGTGGT 100 86
 CLH39_17820 3880758 .. 3880769 -  -3.6  -2.78463   AGGTGCTTGATCACA                CGCC AAGA AGCG                 GCACAGCGCTACAAG  44 126
 CLH39_17815 3880179 .. 3880189 -  -2.4  -2.53911   GGAACCTGGAACCCA                 GGTG CAC CTCC                 AGGTCTGAGCGCTTG  38 57
 CLH39_17805 3878889 .. 3878932 - -10.2  -2.83164   TCAGGCAGCACCACA GGTCTTGTGAACCGCCCCAC TTTT GAGGATCGCTTCCCAAGACC TGAGGTTATTTTTCT  69 31
 CLH39_17795 3876810 .. 3876843 -  -8.1  -3.09452   ATTTTTGAATATAGA     GCCAGTCAACCAGCA AGCA TTCCGATTGGCTGGC      TGGTCTATCTGGGCC  62 143
 CLH39_17790 NONE
 CLH39_17785 3876055 .. 3876076 -  -6.5  -4.11692   CATGGATGTCCAAAA           GGCATCCAC AAGT GGGAATGCC            AGCCAGAACGTAACC  69 45
 CLH39_17775 3874094 .. 3874118 -  -9.3  -2.63112   AAACGTTCGAGACCA          GCCTCATTCCA AGG CGGAATGACGC          AACAAATTTTCCAGC  61 4
 CLH39_17770 3873451 .. 3873479 - -12.5  -3.01208   CCTGAGAAGAACAAG        GCAAACAGAGCCA AAC CGGCTTTGTTTGC        ACCTATCCAACGGGA  78 119
 CLH39_17720 3861310 .. 3861337 -  -2.7  -3.78775   CGGTCGATCAGGAAA        CGGAAGAGC GCATTGCCAA GCTCTTGCG         CGAGACCCCCGGTGT  51 276
 CLH39_17700 3856650 .. 3856673 -  -9.6  -3.15056   ATCGGGAACGGAAGA          CTGAGCCC ATACTGCA GGGCTCAG           GACTATCGAAAACAA  68 71
 CLH39_17690 3850813 .. 3850843 - -15.6  -3.28309   ACACACACAAGCCAA       TTGCGGCGCAAATA TGT CATTTGCGCCACAA       TTCTCTGCCCGCTTT  95 59
 CLH39_17685 NONE
 CLH39_17680 NONE
 CLH39_17675 3846627 .. 3846649 -  -9.8  -2.93869   GATGATTTCAGAAAC           GGCAGCAGAC CAT GCCCACTGCC           CTTCCTGCTCGCATA  67 42
        gcvH 3846107 .. 3846136 - -13.6  -5.04868   CGAAACCAAATAAAA       GGCCTGAATCCG ATGACA CGGCTTCAGGCC        TTTTTTGCGATCAGT 100 94
 CLH39_17650 NONE
 CLH39_17645 NONE
 CLH39_17640 NONE
 CLH39_17635 NONE
 CLH39_17630 NONE
 CLH39_17625 3838732 .. 3838750 -   -11  -5.38958   ACCTACAAAGAAAAA             CGGGTCAA TTA CTGACCCG             TTTTGCTACTTGCAT 100 91
 CLH39_17590 3830241 .. 3830256 -    -9  -5.39721   GCAGCATACAAAAAA              CCGCTT TTCG AAGCGG               TTTTTTTATTCAGAA 100 52
 CLH39_17555 3823830 .. 3823842 -  -3.4  -3.57263   AGCGCGAGCCCGAAA                GCAA GTATT TTGC                GGGATTGGGGCTCAG  49 37
 CLH39_17550 NONE
 CLH39_17545 NONE
 CLH39_17540 NONE
 CLH39_17535 NONE
 CLH39_17530 NONE
 CLH39_17525 NONE
 CLH39_17520 3813973 .. 3814031 -  -6.1  -5.65177   ACAGCGATAAAAAAA GAGCTGCACTGCCT-CTGAAACCTTGGAT TCA ACCCCAAGTCACAGCAAGCAGTTCAGC-C CGTTTTTTATGCCTT 100 67
 CLH39_17510 NONE
 CLH39_17505 3810072 .. 3810100 - -13.3  -4.57837   ACAGGCTCGCAAAAA        CAAAAAAGGGACT TGA AGTCCCCTTTCTG        CAAACTCGGAGAGCC 100 41
 CLH39_17470 NONE
        lolB NONE
 CLH39_17460 NONE
 CLH39_17455 3799916 .. 3799965 -  -6.5   -4.2828   TTTGATGCAGGAAAA GCAAAGCTGTTGA-TCGAAACCCC TAC AAGGAAACGACTCAACAGCTTTAC ATTATCGCAGGCTAG  74 51
 CLH39_17450 3798901 .. 3798930 - -10.7   -2.5664   TAGCGAACTACCAAG       TTGACGTGCGCCG CGAC CAGCGCACGCTAA        AAAACTTAATCAGTG  68 31
 CLH39_17445 3798167 .. 3798192 - -14.7  -4.63048   GGCACAAATAACAAA         CCCCCGCCAGC ATAC GCTGACAGGGG          TTGATTCGCCAAGCT 100 73
 CLH39_17440 NONE
 CLH39_17435 3796593 .. 3796609 -  -6.5  -3.07132   GAGTTATATAAACGA              TGCGCTA TTG TAGCGCC              CTTGGACGCTACAGA  56 106
 CLH39_17430 3795414 .. 3795443 - -17.9   -4.9934   ATAATAGCAGAAAAA       TGGCAGGAGCCTG ATCC CAGGCACCTGCCA        CATCTACAACACTTG 100 49
 CLH39_17425 NONE
 CLH39_17420 3794557 .. 3794588 -  -8.8  -3.93398   AGCGACATAGAACAA      GCATTGGGACTAGCA GGC TGCTC-CCCCAATGC      AGCCCTGCCAGCTCC  75 112
 CLH39_17415 3793320 .. 3793343 -  -2.5  -4.19238   CCGTCAACCGCAAAA         GCA-GCG-AAG GCGA CTTGCGCATGC          GTCTGGCACAACTGG  59 419
 CLH39_17405 3790835 .. 3790873 - -20.4  -3.31322   GGCAAGTCTTCACAA   CTATTGCGGCATCCTGGC CAG GCCAGGATGCCGCAATTT   CAATCTGCTTTACGT 100 54
 CLH39_17390 3786828 .. 3786839 -  -7.2  -4.05788   GTGGCCGAAAGCAAA                GCCG AAGG CGGC                 CCGGATCTGTCCACC  68 296
 CLH39_17380 NONE
        ccmB 3785037 .. 3785047 -  -8.2  -3.38072   TTTACTCAAGAGCAA                 GGCG CAA CGCC                 GCTGCCGTAGCAGGT  65 1
 CLH39_17370 NONE
        ccmD 3784079 .. 3784109 -  -2.5  -2.57881   CAATGCGCCCAGAAT       CAGGACCAGACGA TTTTG TCGCTTAGTCATG       GCGCTGGTCCCCCAG  39 17
 CLH39_17360 NONE
 CLH39_17355 3781692 .. 3781707 -  -3.2   -2.8577   AGGGAACAGTGAAAC              GGTTCA TGCC TGCACC               TGCGTATTCATGGCT  41 13
 CLH39_17350 NONE
 CLH39_17345 3780692 .. 3780706 -  -2.8  -5.39721   CCACGATATAAAAAA               CAATAG TCA CGATTG               TTCATCCCGAGAAGA  83 17
        ccmI NONE
 CLH39_17335 3779026 .. 3779059 -  -8.9  -3.41878   GCCGTGAAGTGACAA     TGCGGTGCTTCCTGA TAGC TGATGAAGCACCACA      CTGATAACAGGCAAA  69 53
 CLH39_17310 NONE
 CLH39_17305 3773701 .. 3773728 -  -2.6  -4.13963   AGGGCGGAAAAAATA        CGCGAAGTAGAC ATAC ATTAACCTCGCG         CCGGGAACAGGCCCG  57 15
 CLH39_17300 NONE
 CLH39_17295 NONE
 CLH39_17290 3771184 .. 3771209 - -16.2  -5.39755   GATAAGCATAAAAAA         TGCCGCCTGC AATCAA GCAGGCGGCA          TCTTGGGATTGTTGC 100 53
 CLH39_17285 3769899 .. 3769911 -  -3.3  -5.83211   CAGGAAAATAAAAAA                TCCAG GAC CTGGG                TCACTTCAAGGCGGC  91 75
 CLH39_17280 3768479 .. 3768508 - -21.5   -2.8655   CGGACGGATAGCAGA       CGGCCCCGGACTC AAAA GAATCCGGGGCCG        TTTGTTTAGGGTCCG 100 50
 CLH39_17265 3766207 .. 3766227 -  -2.5  -4.07568   GGCCTGCCTTCAAAA            CCAGGCT TGCCTTC AGCCTTG            CTGCGGGTCCTGATC  55 17
 CLH39_17260 3764176 .. 3764192 -  -3.6  -2.71712   CGCCCTGGTGCAAAC              GCTGAG CCTGT CTCCGC              TGCTGGCCAATCTTT  44 239
 CLH39_17250 3762827 .. 3762839 -  -9.1  -3.62597   GCGACCTTTGAACAA                CGTCC ACC GGACG                AGCAGGAAATGCGTG  66 457
 CLH39_17240 3762255 .. 3762277 -  -4.2  -2.96538   ACAAGCTAGTACAGA          CCTGAACCT TGAGCC AGGT-CAGG           ATTCGTTCAATGCGC  47 21
 CLH39_17235 3761686 .. 3761701 - -11.8  -4.64844   CGCAGACACAGAAAA              GCCCGC CTAG GCGGGC               TTTTTCTTTGGGCTG 100 48
 CLH39_17205 3754196 .. 3754210 -  -4.2  -3.05384   GTTTTCGTCATGCAA               TGGGGT CTA ACGCCA               GAGCATGTCGGCAGC  48 17
        moaA NONE
        mobA 3752104 .. 3752121 - -12.7  -4.96848   CTTGCCATACAAAAA             CCGCCCT GATC AGGGCGG              TTTTTTTTGTGTTGT 100 196
 CLH39_17155 3745144 .. 3745168 - -12.9  -4.43307   GCGGGAAGAAAAGAA          GAACAGGTCTG AAT CAGACCTGTAC          AAGACAATCAGATGA 100 49
 CLH39_17150 NONE
 CLH39_17145 3743000 .. 3743020 - -15.4  -5.96219   CAGCGACAAAAAAAA            GGCCGGGC TTTTT GCCCGGCC            TTCAAGGTGATTCAC 100 120
 CLH39_17140 3742122 .. 3742142 -  -8.2  -5.78622   GCACGGTAAAAAAAA            GCGCCAGC TTGCC GCCAGCGC            CTTGTAATCCTTCTA 100 77
 CLH39_17135 3740411 .. 3740427 - -13.7  -5.72622   GGCAGAAATAAAAAA              CCCAGGC TTG GCCTGGG              TTTTTTTATGAGTGA 100 89
 CLH39_17115 3736497 .. 3736535 - -13.3  -2.62184   TGGTGCTGGACATCA  GCCTGCAACAGGCACGCT GGCA AGCACGCCTGTT-CAAGC   AATTGGCTTTTGTCT  74 115
 CLH39_17085 3726963 .. 3726988 - -10.5  -4.95854   CAAAAAATTCAAAAA         GCCTGATAGAT TTCG ATCTGTCAGGC          TTTTTTCATTGGTGG 100 78
 CLH39_17050 3722858 .. 3722913 -  -8.4  -2.77283   GCACCAACAAACTCA CGGCAGGCTTTGCGCTAGCAGGGAT TGAAAGG ATTC-TGCTATTGCAAAGCCTGCGG TGCATTCGGGTACAA  59 8
 CLH39_17020 NONE
         map 3715736 .. 3715746 -  -2.4  -2.91276   GTCCGGGGGACAAAC                 CGCG CTC CGAG                 TTCACGACACGCCCG  41 369
        dacB 3708299 .. 3708318 - -10.7  -4.07008   GACTAACTAAAAACA            GGGCTGC AGCACA GCAGCCC             GCACTATCGTGATCG  84 41
 CLH39_16980 NONE
 CLH39_16975 3706753 .. 3706767 -  -2.1  -3.96148   TGTTTTCAGGATAAA               GATAC TCGGT GTACC               TGAGACCAGTCAGTC  53 47
 CLH39_16970 3706231 .. 3706268 - -14.9  -3.04144   GCCTGATTTCTAAGA   GGCTGCCGATCTGGACC GCAA AGTCCAGATCGGCAGGG    CTGCTTTTTATGCTG  89 83
 CLH39_16965 NONE
 CLH39_16960 3705357 .. 3705370 -  -9.5  -6.11644   GCAGGCAAAAAAAAA               CCGGC CTGG GCCGG                TTTTCAAACAGACAA 100 47
 CLH39_16955 3704241 .. 3704256 -    -9  -5.76633   CGATACATAAAAAAA              CCTGCA AATA TGCAGG               TTTTTTTTAAGACGC 100 124
 CLH39_16950 NONE
 CLH39_16945 NONE
 CLH39_16940 NONE
 CLH39_16935 NONE
 CLH39_16930 3698898 .. 3698929 -  -5.8  -3.68886   AGCAATTGATGCAAA      GGCAGCTTAAACCA CTGT CGTTTCATGCTGCC       ACTCCTTGAGAGCTT  62 0
 CLH39_16925 3697574 .. 3697593 - -12.2  -5.78622   GCAGCCCAAAAAAAA            CGTCCTGT AAAA ACAGGACG             CTTAAAAGAAAAAAG 100 45
 CLH39_16910 3694193 .. 3694206 -  -2.4  -4.10657   GCAGAGGGTTGAAAA               TTGC AATGTA GCAA                AACCGCCCTCCTTGC  55 83
        gloA 3693667 .. 3693700 - -17.7  -4.85782   TGTTCCAAAAACAAA     CAAAGACCAT-CACCG CAA CGGTGCATGGTCTTTG     TTTTATTCTGCTCTT 100 78
 CLH39_16895 3691054 .. 3691078 -  -5.7  -3.53012   TTCTGGGCCGCTAAA          CCCGGCA TCGTTTCAGTC TGCCGGG          CAATGCAGCCCGACT  59 94
 CLH39_16885 3688653 .. 3688667 -    -5  -4.67755   ATACCTACCCAAAAA               TCCATT CAA AACGGA               CCGGGATCGCCAGAG  73 208
 CLH39_16880 NONE
 CLH39_16875 NONE
 CLH39_16870 3684408 .. 3684424 - -10.9  -3.02829   GACATTGGCCGAATA              TTTCCGC GAG GCGGAAA              CTGGCCTGCATCTGT  69 268
         tkt NONE
         gap 3680630 .. 3680661 - -12.2  -2.60075   GTTCTGGGAATTAAC      GTGACAGGGGCGGG AAAT CCCGCCCCTGCTAT       TCAGATCTTACTTGG  73 33
         pgk 3679367 .. 3679390 - -13.2  -5.86976   GCAGAAAACAAAAAA          GCCAGCCAAC GTTC GTTGACTGGC           TTTTTCTTACGAAGC 100 51
 CLH39_16835 3676625 .. 3676643 - -11.7  -4.12532   CTTTTTATATAGAAA             TGGCGGC TTTGC GCCGCCA             TTGGTGAAACCTGTT  95 113
        fabG 3675783 .. 3675801 - -11.7  -3.20126   AAGCGAAATAAACTA             CAGGCCC TGAAC GGGCCTG             CCAATAGCACGATTG  79 60
 CLH39_16825 3675080 .. 3675111 -  -6.4  -4.85195   AAAATAATTGAAAAA      CTTGGCCGGGCACG GTTC CGTGCACAGCCGAT       TGTTTGTAAGCGTAT  78 40
 CLH39_16820 3673927 .. 3673970 - -16.7  -2.61144   GCACCGGGCAAAGAC GCGGAGACCGGGGCGGGCAG TCGTG CTGCCCACTCCTG-CTCCGC CTGACAAATTTACTG  91 35
 CLH39_16815 3672742 .. 3672762 -    -9    -3.965   CCCTAAAAGGAAGAA           GGCGCCATG CTGC CA-GGCGCC            TTGGTAAATAGAAAA  75 222
        purE NONE
 CLH39_16805 NONE
 CLH39_16800 3669981 .. 3670005 -  -8.6  -3.80014   ACACGCACTACTAAA          CAGCAGACTT ATTCA AAGGCTGCTG          CTGCTCGGCCCAGGC  70 9
 CLH39_16790 3668040 .. 3668066 - -15.2  -4.17878   CTAAAGCAAACCAAA         CAGGGCAAAGCC AGA GGCTTTGCCCTT         GTCCGTTTCAGCCCG 100 251
 CLH39_16780 NONE
         ggt 3663637 .. 3663675 - -17.7  -5.52909   TAAGACTGAAAAAAA  GCCCTCAATGCTATGGAT ATGG ATCCAC-GCATTGAGGGC   TTTTTACTGGTCACC 100 271
 CLH39_16745 3658105 .. 3658116 -  -5.8  -3.92075   ACTGGGATGCACAAA                CCTG GTTG CAGG                 CCATGCATACCGCGT  61 508
 CLH39_16725 3649601 .. 3649614 -  -9.5  -2.83894   ACGACGATGATGACA               GCCCG GAAC CGGGC                GTGCACGGCCACACC  65 56
 CLH39_16715 NONE
 CLH39_16710 3646637 .. 3646647 -  -3.2  -3.57263   ATTTTCATCCGTAAA                 CCTC CGT GAAG                 TATCCGTGCTCAACA  49 133
 CLH39_16705 3646322 .. 3646358 - -21.8   -5.5604   CTAAGCAAGAAAAAA   GCCTCAAAGCC-GGGAG GGAT CTCCCAGGCTTTGAGGC    TTTTAATCCGATGAG 100 69
 CLH39_16675 NONE
 CLH39_16670 3638468 .. 3638484 -  -2.9  -2.87709   CAATCATAAAAAAGG              TCAGCCT TTA AAGCTGG              GCGGCAAAGGTGGGC  42 9
 CLH39_16665 NONE
 CLH39_16660 NONE
        recQ 3633530 .. 3633548 -  -5.9  -3.10622   AAGATTGACGGAAGA             CGCGGCT TTTGC AGCCGCC             AGCGTCAGTTGATGC  53 170
 CLH39_16650 NONE
 CLH39_16645 3630066 .. 3630080 -  -2.1  -3.36327   GGACTTGACTCATAA               CTCGA TACCG TCGAA               GTCGCCAGCCGACAC  46 5
 CLH39_16640 3629496 .. 3629507 -  -5.8  -3.96469   AGAGCGCAACAATAA                GGCT AACA AGCC                 TGGCCGTCTGGCCCC  64 273
        rnpB 3627266 .. 3627276 -  -4.6   -3.8917   TTTCAATCACAACAA                 GCAC TTA GCGC                 ACTATCCTAGAAGTG  59 202
 CLH39_16625 NONE
 CLH39_16620 NONE
        ftsL NONE
 CLH39_16610 NONE
 CLH39_16605 NONE
 CLH39_16600 NONE
 CLH39_16595 NONE
        ftsW NONE
        murG NONE
 CLH39_16580 NONE
 CLH39_16575 NONE
 CLH39_16570 NONE
        ftsA 3611433 .. 3611444 -  -5.8  -2.60392   CATCTGCCAACCAAG                GGGT TCGC ACCC                 GGTTTGAACTGCCTC  50 88
 CLH39_16560 3610083 .. 3610125 - -10.5  -4.41114   CCACGACACAACAAA GCACTTACGCCCCCTGAGCG CGAA CGCCCAGGGGGAGTC-GTGG GAGAAATCAAATTGG  89 69
 CLH39_16555 3608875 .. 3608910 - -10.4  -4.52857   AGCTGTGACAGAAAA    GCCCGCACG-CCAGG TACAAGT CCTGGACGAACGGGC    CTTGGAATCATTTGA  91 150
 CLH39_16545 NONE
 CLH39_16540 3604656 .. 3604680 - -15.7   -5.4833   GCATCCAAGAAAAAA          CCCCATGCGCC AGG GGCTCATGGGG          TTTGATCTCGCAGCC 100 67
 CLH39_16535 3603313 .. 3603327 -  -8.5  -5.88471   TATGATTAAAAAAAA               CCGGC TTCTG GCCGG               TTTTTTGATTTCTGC 100 314
 CLH39_16515 3598176 .. 3598198 - -14.2  -5.24129   TCGCCCGATAAAAAA           GCGAGCCATT TAA AACGGCTCGC           TTTTTTCATGCAGAT 100 102
 CLH39_16505 3595251 .. 3595271 -  -7.6  -2.78237   TAATTCGAAAAAAGG            GCCTTAGC GAGGT ACTAAGGC            TTGCTCCAAACGCCG  56 8
 CLH39_16500 3592865 .. 3592905 - -19.1  -5.79595   GCTGAAAATAAAAAA  TGCCTCCCGAGACTGAGGT CAG ACCCCAATGCCGGGAGGCA  TTCAAAGACGATCAG 100 54
 CLH39_16495 3592554 .. 3592570 - -13.7  -5.27335   GCGCCCAAAGAAAAA              GGCCGCT AAG AGCGGCC              TTGTTTCTACGTTTC 100 48
 CLH39_16490 NONE
 CLH39_16485 3590658 .. 3590669 -    -3  -3.23047   TTCAGAAAGGCAAGA                CTAT GACG ATAG                 CTGCCAGGACTTATT  46 36
 CLH39_16480 3589779 .. 3589808 - -13.7  -5.42862   ATAGTTTTAAAAAAA       GAAAAACCTCGGG AAAT CCCGAGGTTTTTT        CATACAGCGAGTCGT 100 55
 CLH39_16475 3588819 .. 3588850 - -14.5  -5.42198   CGTCAAAAAATAAAA      GCGGTGATCCCGT TACGAC ACGCGATCACCGC       TTGGCATGCGCTTGG 100 53
 CLH39_16470 NONE
        glnQ 3587129 .. 3587170 - -17.4  -4.34488   GATAGTCACAAGAAA GCCCTTCAGGCCCTTGGC TTCATC GCCAAAATCCTGAAGGGC  TTTTTTTAGCCGACG 100 55
 CLH39_16445 NONE
 CLH39_16440 NONE
 CLH39_16435 3579641 .. 3579676 -   -12  -5.60993   TCCCTCATAAAAAAA    CACCCCAAAACGGAAT CGAT ATCCAATTTTGGGGTG     TTTTTCTTTACGGGG 100 50
 CLH39_16395 3571503 .. 3571519 -  -5.1  -3.73936   AAACGGGATGAACAA              GGGGAAA CTA TTTGCCC              TGCCAGACAGGTTCG  59 16
 CLH39_16390 3569643 .. 3569656 -  -3.7  -4.59773   GGCGATGCTGAAAAA               GCCAG TACC CAGGC                AAAGAGCGGGTCTGG  68 319
 CLH39_16380 NONE
 CLH39_16375 3566276 .. 3566292 -  -2.2  -3.48395   AGTTGCGTCATACAA              GGCCCT TAATT AAGACC              ACCCATACCGACGTT  46 18
 CLH39_16370 3565931 .. 3565981 -  -6.8  -3.40843   GAAAACGTTCAAAGA GGGCAAG-CGGCCTGGCCTGTCC GGCAAA GGACAAGCCAGGCAAACCTGTTC AAGCTAAAGGATCAC  60 37
 CLH39_16365 3564588 .. 3564598 -  -5.4  -2.82516   CCGTTCACCATCAGA                 GTCA TCA TGAC                 TGTTGGCTCCTGCTG  48 75
 CLH39_16360 3562679 .. 3562705 - -11.6  -3.60074   GACAAACCCTGGAAA         CAGCAGCGGC TGAACTG GCCGCTACTG         CTGGCATCCAGGATC  74 395
 CLH39_16335 3558664 .. 3558682 - -10.3  -5.84381   GCAGGAATAAAAAAA             GCCAGCT TGATG AGCTGGC             TTTTTTACTGACGGA 100 55
 CLH39_16325 3556889 .. 3556931 - -26.4  -3.14132   GCTCGCTCGTAGGAA CGGCCCCTTGACGGCCGGAT AGT ATCCGACTGCCAAGGGGCCG TTCAAAGAGACCGTT 100 60
 CLH39_16310 3553204 .. 3553221 - -12.7  -5.79595   TTCCAAAATAAAAAA             GGACGCC TACT GGCGTCC              TTTCCTTAACCTTTA 100 67
 CLH39_16290 3548706 .. 3548742 - -10.2  -5.64274   GGAGCCATAAAAAAA    TACCCCAAGCACCAAA ATGAG CTTGGCACTTGGGGTG    CTGTTCCTTGCCAGT 100 65
 CLH39_16245 3538075 .. 3538088 -  -3.8   -4.0847   GAGACAGAAGAACAA               GCCA TCGCCT TGGC                GAACGATACCCAATA  60 479
 CLH39_16210 3531927 .. 3531940 -  -2.3  -4.29302   GCTACAGCAAAAGAA               CGGTC CAAA GACCC                TGTCCTGCCGCCGTG  60 130
 CLH39_16205 3531630 .. 3531650 -  -7.5   -3.8377   AAGTGGGATATCAAA            GCTCGGCCT ATC AGAACGAGC            CTTCAGGACCATGAA  69 66
 CLH39_16200 3530222 .. 3530235 -  -9.5  -5.41143   GATGCTGTAAAAAAA               GGGCC GCAA GGCCC                TTTTATCTTTATGTA 100 34
 CLH39_16190 3528820 .. 3528834 -  -9.2  -6.02919   GCAGAAACAAAAAAA               GCCGCA TTA CGCGGC               TTTTTCTTGGACGAC 100 45
 CLH39_16180 NONE
 CLH39_16175 3527003 .. 3527024 - -15.9  -4.72272   CCCCCTTATCAAAAA           GACCCGCCA TGGC TGGCGGGTC            TTTTATTTGGTGTAA 100 144
        modA NONE
        modB NONE
 CLH39_16145 3521217 .. 3521229 -  -7.7  -3.64703   CCGTGGCGACTCAAA                TGGAG TTA CTCCA                AACCATGATCATGCA  66 451
 CLH39_16135 NONE
 CLH39_16130 3514762 .. 3514777 -  -2.4  -2.71731   TTCACCGCCGAACCA              TGCGGA GGGG CCCGCC               GACCAATAGTGTAGC  39 42
         ffs 3514616 .. 3514631 -  -4.6  -2.59332   AGCGAAAGGAAAAGT              GTACCG GATT CGGTGC               TGAAGGGAAGCAGAT  44 74
 CLH39_16120 3512125 .. 3512142 -  -6.2  -2.69948   ATATAAATTGACAAG             GGGCCA TTCAGG CGGCCC              GAACCAAAGGAGTGG  50 15
 CLH39_16115 NONE
 CLH39_16110 3511109 .. 3511130 - -12.3  -5.22312   ACTTATACTAAAAAA           CAAAGGGGG GTGT CCCCCCTTG            TCCGCCAAGCGGTCA 100 48
 CLH39_16105 NONE
 CLH39_16100 NONE
 CLH39_16095 3508339 .. 3508362 -   -11  -5.60993   GCCGGCACAAAAAAA          CCGGCCTCTC CAAA AAGAAGCCGG           TTTTCGGGGCAAGCC 100 76
 CLH39_16090 NONE
 CLH39_16085 3506550 .. 3506583 -  -6.7  -5.72622   TTGATAAATAAAAAA     TAGAGCCCG-GGCTGC TAG GCAAACTCGTGCTCTA     TTCGCTGATTCGCAG 100 23
 CLH39_16080 3503955 .. 3503977 -  -3.4  -3.65046   GCCTGACGTTAACAA           TCAGCGAATC AGA AATTCACGGA           GGCCGACAACATGAA  49 11
 CLH39_16075 3502724 .. 3502754 - -11.8  -4.77036   CTTGAGCAGCAAAAA       GACTCAGCCCGGCA TTG CGCCGGGCTGATTT       GCTTTGAACCTTCAG 100 48
 CLH39_16065 NONE
        carB 3497050 .. 3497070 -   -14  -5.95946   GCAAGAACAAAAAAA            GGCGCACC ACTAA GGTGCGCC            TTTCCAGCCGGGTAA 100 44
 CLH39_16055 NONE
 CLH39_16050 3495237 .. 3495249 -  -2.7   -2.8352   GCTGAAGCCAACAAG                GACTT CAA AAATC                AGCTACAGGGGGAAT  41 43
 CLH39_16040 3492486 .. 3492503 -  -5.5  -5.60993   TGCGGCAGAAAAAAA             CCCCG CGAAGAAC CGGGG              TGTGAGATCTATTGT  93 197
 CLH39_16030 3491712 .. 3491736 - -19.3  -3.60151   TGCCGTAAATTATAA          GGCCCCCGCAC AAT GTGCAGGGGCC          TTTCTTTTGCGTGCT 100 80
 CLH39_16020 NONE
 CLH39_16015 3488342 .. 3488370 - -13.2  -3.99678   ATCCCCATAACCAAA       GGGCGC-TCCAGC CCAA ACTGGAAGCGCCC        ACAAGACCACTCAGG  93 76
        folP NONE
 CLH39_16005 3486159 .. 3486186 -    -5  -3.62096   CGTGATGACTCCAAA        CACT-TTCGTGCA TCA TGCACAAACAATG        TTTCAGGTATTTGAT  56 51
 CLH39_16000 3485266 .. 3485301 -   -25   -5.1925   CCAGAACCTAAAAAA    CCCCCGAAAGTTGGAT TGCC ATCCAACTTTCGGGGG     TTCTTTTTATTCGCA 100 85
        ppk1 3481241 .. 3481270 -  -5.2  -3.83026   TGTCGTCATAGTAAA       CAGACTAT-ATGA CACGT TCATGACAGTCTG       TATTTCACACACCGC  61 30
        pstS 3480065 .. 3480091 - -14.5  -4.38927   TTTTTACATAATAAA        GACGGCACCACC TAGA GGTGG-GCCGTC         TCGCAGGATCAATTT 100 69
        pstC NONE
        pstA NONE
 CLH39_15970 3477153 .. 3477190 - -13.5  -5.66684   CAAGGGATAAAAAAA   CACCCCAATCCTTGGAC GTAA ATCCAGCGATTGGGGTG    TGTGCCACACAGGAA 100 122
 CLH39_15955 NONE
 CLH39_15950 NONE
 CLH39_15945 3471835 .. 3471852 -  -9.8  -4.57569   TCATGTGCTGAAAAA             CGCCCG CTTCGC CGGGCG              TTTTTCTTGGATGAT  90 182
 CLH39_15935 3470358 .. 3470372 -  -4.2  -4.27316   TGCGTCAATGGAAAA               CGGACA GTC TGCCCA               TGACACTGGAACTGG  65 251
 CLH39_15925 3469109 .. 3469146 - -14.3  -5.14563   GCCCCGACCAAAAAA   TTCAAAGGCCTTGCAGA GCAA TCTGCAAGGCCTTTTAG    TTTTGCCAGTTCGGT 100 53
 CLH39_15910 3466690 .. 3466720 -  -5.6  -2.66692   CAGCATGACGACAAG      CAGC-CTTTGATC AGTTCA GATCAAAGTACTG       GTGGTCCTTGGGACG  47 5
 CLH39_15905 3465785 .. 3465814 - -12.3  -4.16371   CATTAAAGAATTAAA       GGCTTAGTTCATT GCAC AGTGAACTAAGCC        TTTTTCTTTGCCTGC  95 397
 CLH39_15880 3458635 .. 3458659 -  -4.9  -3.62096   CGTTACGACTGGAAA          GTCCGCTACGC CCA GGACAACGGAC          TGGTACTGTCTGGCA  53 232
 CLH39_15870 3457090 .. 3457105 -  -6.8   -3.1506   AAACGGCGCTATGAA              GACGCC TGCC GACGTC               TATGCGGTGAACATT  56 132
 CLH39_15865 NONE
        actP 3454884 .. 3454909 - -11.9  -5.63517   TGGGCAAATAAAAAA         CCCGGTGTGAT CTGA ATCACACCGGT          TTTTTTTGCACCCCT 100 90
 CLH39_15835 3450527 .. 3450546 -  -3.4  -3.79419   GGTCTGTATAAAAGA            GTCCATGG TGAT CCTTGGTC             CAGGCCGGGGACTTA  52 171
 CLH39_15830 3449861 .. 3449881 -  -8.4  -2.63207   AATATGACTCACAAG            TTTAACGG ATAAG CCGTTAAA            TCATAAGAACCATTT  58 26
 CLH39_15825 NONE
 CLH39_15820 3447711 .. 3447731 - -10.4    -5.626   TAGTGCATAAAAAAA            GCCCTGGC ATGAA ACCAGGGC            TTTTTCCAGACGGCC 100 61
 CLH39_15815 NONE
 CLH39_15810 3446641 .. 3446652 -  -4.4   -4.0492   CAAGGCTTATAGAAA                GTAG CTAC CTAC                 ACTCCCCAGAAACGC  61 5
 CLH39_15765 NONE
 CLH39_15760 3432551 .. 3432576 - -11.1  -3.48395   ATGGGCTTGAGATAA         GGGCGTCAAAC ACTT GCTGGACGCCC          TATGTGGTGGAGAAC  77 74
 CLH39_15755 NONE
 CLH39_15750 NONE
 CLH39_15745 3427324 .. 3427334 -  -6.8  -3.08679   TGGCCTGACCCAAGA                 GCTG GAG CAGC                 ACTGCCAGGACTACT  54 412
 CLH39_15710 3419199 .. 3419209 -  -4.6  -4.04397   ATGTGCATAAAAATA                 GGGA AAA CCCC                 TGTATTAGCAAAAAA  61 100
 CLH39_15705 3417825 .. 3417857 - -13.6  -5.47399   CTAACCCGAAAAAAA     TGCCCCAAGCC--GCT AAA AGCAAGGCTTGGGGCA     TTCATACTTTCTATC 100 110
 CLH39_15700 3416384 .. 3416402 -  -6.6   -3.9461   TTCGCTCAAGAACAA             GGGGCACG TTG CACACCCC             TGGCCGTGAATATTG  66 421
 CLH39_15640 3404421 .. 3404441 - -12.5  -4.25256   CTGTGATTAAAAGAA            CACCCCGGC AAT GCCGGGGTC            TAGGTTCTTAATCTT 100 33
 CLH39_15635 NONE
 CLH39_15630 3401864 .. 3401892 - -11.7  -5.45802   CCCTGAAAAGAAAAA        TCCCCGCTGGC AGATCAA GCAAGCGGGGA        TCTCAAAACATCTTA 100 53
 CLH39_15625 3400826 .. 3400842 -  -5.1  -2.73875   GTGGGGGCAAGAGGA              TCAGTGT CAG ACACTGG              GACCTCAGTAAGAGT  48 114
 CLH39_15605 NONE
 CLH39_15600 NONE
 CLH39_15595 3395382 .. 3395402 -  -5.4  -3.55444   GGGTGAGGGGCTAAA           GCCC-CCAG CTGA CTGGAAGGC            AATGGATCAGGCACG  56 32
        tilS NONE
 CLH39_15585 3392878 .. 3392888 -  -2.6   -2.7165   GAAGTAACTATAGCA                 TTTT TAA AAAA                 CCAATGCAAATAGCT  39 48
 CLH39_15580 3392724 .. 3392741 - -11.3   -5.9218   CAGACAATAAAAAAA             GCCCTTG AAAA CAAGGGC              TTAATTTAATTCCAG 100 42
 CLH39_15575 3391733 .. 3391749 -  -4.3  -3.09175   AACAAATCTTGAACA              GACGCCA TTG CGACGCC              CGAGAAAATGGAAAA  48 56
 CLH39_15570 3390487 .. 3390517 - -15.6  -4.85782   CCTTGGAAAAATAAA       CGGTAGCGTTAC CTATCCC GTAACGCTACCG       AAGAAAACCTGTTCA 100 61
 CLH39_15565 3390028 .. 3390049 - -10.1  -3.34398   TGTGCCGCCTAAAGA           GGCCCGC GAAAGTAT GCGGGCC            CAGGTCCAAACAAAC  69 80
 CLH39_15545 3386397 .. 3386455 - -15.4  -2.93715   ATAAGCCGGAGAAAT TCAGAGCGCAACAGCAATGCGTGGTGGG CCTGC CCCACC-CGC-CTGCTGGTCCGCACTGA ATGGACAAACCCCTT  86 198
 CLH39_15525 NONE
 CLH39_15520 3380516 .. 3380563 -  -4.9   -3.4582   CGAGGCCAGCAAATA GCACAAGGTAACGGTATTCATG GAAAT CATGACTGCCCTT-CCTTGGGC GTATTTTTAGCGCCC  52 4
 CLH39_15515 3379049 .. 3379077 - -14.6  -4.46854   CTACTCAACAAGAAA        GCGCTCTGGCCC GCAAG GAACCAGAGCGC        TTTTTACTGCCAGCG 100 57
 CLH39_15490 3373468 .. 3373490 - -14.9   -4.1413   AACAGACGTGCAAAA           GCGGCGCTA CCTGT TAGCGCCGC           TTTTTTACAACCCAA 100 52
 CLH39_15485 3372540 .. 3372559 - -10.8  -5.17353   ATATTCAGTAAAAAA            GCCATTTC TTCG GAAATGGC             TTTTTTGCTTTCTGC 100 189
        lldD 3370566 .. 3370580 -  -9.2  -3.86194   AACGGGGTCTACAAA               GCAGGC TTC GCCCGC               TCACAAGCCGCCTAC  75 433
 CLH39_15435 NONE
 CLH39_15430 3363126 .. 3363146 - -18.3  -2.90763   GGCACATCGCATACA            GCGCGACCG TGG CGGTCGCGC            TCATAGCAAGACAGG 100 454
 CLH39_15415 NONE
 CLH39_15410 NONE
 CLH39_15405 3356561 .. 3356588 -  -8.5    -2.752   ATTGTGACATAGAAG        TGCCGGACT AAATATGGCA AGTCCGGCA         TGTGGCGCGGCTTAA  59 37
 CLH39_15400 3355920 .. 3355934 -  -7.8  -3.25787   GAGGGAACAGGAATA               CGCTGC CGT GCAGCA               GGCTTTGAAACAGCA  59 127
 CLH39_15390 3352385 .. 3352407 - -14.2  -3.13164   CGCGCAAGGAGGGAA           TCCCCCCATA TTG CATGGGGGGA           GGTCTTACAACACTA  86 57
 CLH39_15385 3351120 .. 3351144 - -12.9  -3.01712   GGCCTCCCGGTAAGA          CGGGAAGAGCT TTC AGCTCTTCCCC          TCAACACCTACCTAC  78 37
 CLH39_15360 3345588 .. 3345632 -    -2  -3.40639   AATTTGATCAATGAA TCGCTCGCCCCTGAAAAGCT GAAAT AGCTGCTCAAGGGCCCGTAA CTTGTTCCCCAATCC  46 12
 CLH39_15355 NONE
 CLH39_15350 NONE
 CLH39_15345 NONE
 CLH39_15340 3341091 .. 3341110 - -13.6  -5.42259   GTACGCGCAAAAAAA            GGGGCTGT TTTT ACAGCCCC             TTTTTCCTGCCTGCT 100 59
        prpR NONE
 CLH39_15275 3325111 .. 3325128 -  -4.1   -3.4298   ACAACAAGAGAGCAA             GCTGC ACAACAAA GCAGC              CGCATGGAAATATAC  50 95
 CLH39_15270 3323985 .. 3323997 -  -2.6  -2.88544   CCTCATGTCTATAGA                CGAG CCAGC CCCG                CAAACATCGGATGGG  41 122
 CLH39_15265 3321376 .. 3321396 -   -14  -4.09685   CGCTAGTCTGCAAAA            TCCCCGCC TGATT GGCGGGGA            TTTTTTTTGCCTGAG 100 57
 CLH39_15255 3319233 .. 3319243 -  -2.6  -3.07737   GATAAAAAAAAGTCA                 TAAA ATT TTTA                 ACCTTGGTATTTTCA  42 87
        sdhC NONE
        sdhD NONE
 CLH39_15240 3316632 .. 3316648 -  -2.1  -2.91395   ATCCTGCTTAGAAAG              TCCGGGC CTT GGGCGGA              ATCGTTTCGGCTGTC  41 1
        sdhB NONE
 CLH39_15230 NONE
        gltA 3314192 .. 3314209 - -11.3  -5.85178   AACAGGCAAAAAAAA             GTGCACC CAAT GGTGCAC              TTGACCTTCCAGCTA 100 108
 CLH39_15215 3311089 .. 3311130 -  -9.6  -2.67958   GAAGATGTAAACGCA GACGCCTACAGC--CCCGAC GGTG GTCAGGTCACTGTAGACGTC ATCAGCTGCTTCAGA  65 129
 CLH39_15210 3309679 .. 3309710 -  -3.8  -3.55444   CGCGGAGTCTGGAAA      CCAGCGTAAAAA-AG AGA CTATTTTTAAGCAGG      CACATGAGGCATCCC  52 109
 CLH39_15205 3308604 .. 3308630 - -13.7  -5.08601   TTAGCTGAATAAAAA         CCGGATGCAGC GTAAA GCGGCATCCGG         TTTTTTATTTCATGA 100 252
 CLH39_15195 NONE
 CLH39_15190 3301590 .. 3301620 - -12.7  -2.54371   GGCCTTAAACAAAGT      CGGCCAAG-GCTTA GAAG CAAGCACTTGGCCG       TAAACATACTAGACC  75 56
        lpdA 3300016 .. 3300035 - -12.8  -5.52384   TCGTGACGAAAAAAA            GGGCGAGC CCGT GCCCGCCC             TTTTCCAACAACACC 100 52
 CLH39_15180 3298725 .. 3298745 -  -8.1  -2.93723   GGTTCAGGAATCAGA            CGCGTGGCC AGT GGCCGCGCC            CAGCATCCTACAAAA  60 33
 CLH39_15175 3297203 .. 3297246 -   -22  -4.36596   GGTACAAGGAATAAA GAACAGCTCCAAAAGTGAGA TAAG TCTCTCTTTTGGAGCTGCTC ATTTTCAAGCAATCT 100 133
 CLH39_15155 3290961 .. 3290973 -  -7.7  -2.85351   TGGTGGCAGAGGACA                TCGTC GCA GACGA                GTCCTTACCCTAGTT  56 59
 CLH39_15140 3288868 .. 3288880 -  -2.6  -4.17491   ACCAAATCGTCAAAA                CGCA TTACT CGCG                GCAAAGTTTTTTCTG  57 187
 CLH39_15135 NONE
 CLH39_15130 3287206 .. 3287238 -    -4   -3.5594   AATTTATTGTTCAAA     CGTCGGCTATCAGGC TTCC GCCCGGT-GCCGCCA      TAACTCCCAGCCCAA  52 2
 CLH39_15125 NONE
 CLH39_15120 3285651 .. 3285672 -  -3.7  -3.46212   AGCATGCATAATCAA           TGGCCTC-CA TGG CGCAAGGCCA           TTAAAGACTGATAAA  50 0
 CLH39_15115 NONE
 CLH39_15110 3283445 .. 3283470 - -15.5  -5.10497   AACGCAGTCAAAAAA         GGCCGAATCCC ATAC AGGATTCGGCC          TTTTTAGTTTTCCGG 100 172
 CLH39_15100 NONE
 CLH39_15095 3280629 .. 3280643 -  -2.8  -3.57144   TCTGCCACCTGTAAA               CGAATT GCA AATACG               CTTAGAGCATGACGT  49 139
 CLH39_15090 3278937 .. 3278962 -  -8.3  -2.57132   TGGCGTCGGGATAAT         GGAAGCA-GGCA GAC CGCCCTGCTCCC         GAAACCTGAAAAATT  58 46
 CLH39_15085 3278099 .. 3278109 -  -4.6  -3.06702   ATAAATCAAAAACAC                 GCGC TAT GCAC                 TGCAACAAGCCTTAG  48 37
        phaR 3277447 .. 3277464 - -14.1  -3.71848   TTCCTGCATGAAGAA             GCGGGCC ATGT GGCCCGC              TATCAGGAAGCACTA  95 80
 CLH39_15070 3275129 .. 3275185 -    -8  -2.73771   CCAGACGCCTGAAAG GGCTAGGC-TGAAGGCTGCGCTGTCC TGTGCAC GGACAGCGCAGCGTGCACGCCG-GCA ATGACAGATCCCCGG  59 107
        scpB NONE
 CLH39_15030 3269133 .. 3269146 -  -4.5  -3.73411   GAAAACCGGAAAATA               CGTGC ATTC ACACG                GCCTTACAGGCCCAA  56 86
 CLH39_15025 3268899 .. 3268917 - -10.3  -5.91981   AAAATCCAAAAAAAA             TGGGCTG TACGC CAGCCCA             TGGTCACCATGCACG 100 29
 CLH39_15020 NONE
        nusA 3266870 .. 3266884 -  -2.9  -2.64099   TTGCTTTACTACAAC               TATTC TTAAT GAATA               CAACGCGCGGGACCT  40 52
 CLH39_15010 NONE
 CLH39_15005 3263362 .. 3263378 -  -5.1  -4.20367   TCCGTGAAGAAACAA              CAGCC GCGTCAG GGCTG              TTCGTCTGGCTCGTC  66 17
 CLH39_15000 NONE
        typA 3260717 .. 3260735 - -11.7  -6.10295   GTAAGACAAAAAAAA             CGCCTGC ATCAA GCAGGCG             TTTTCTCGTATCGCT 100 53
 CLH39_14990 3259218 .. 3259232 -  -5.6  -3.32647   CCTGAATTAGACCAA               GCCACG GGC CACGGC               CCAGTAAATACCCCG  53 2
 CLH39_14985 3258685 .. 3258706 - -10.1  -5.64873   CCGAACAAGAAAAAA           GGGCCGCTT TCAC AAGCCGCCC            TTTTTTTCTTTAGCG 100 55
 CLH39_14960 3252911 .. 3252928 - -12.7  -6.11644   CTACTTAAAAAAAAA             GGCGACC ATCA GGTCGCC              TTTTCCTTTAGCTTG 100 51
        aceE 3247689 .. 3247705 -  -9.4  -4.87665   TTTGATGGAGAAAAA              TGGCGG ACTCG CCGCCA              TGAAAAGGGACCAGT  91 152
 CLH39_14940 3246657 .. 3246689 -  -2.7  -5.09762   ACTCCAATATAAAAA      GGGCAATGACG GCAAATCATCA CGTCATCGACC      ATACAAAAGACTTAA  76 37
 CLH39_14935 NONE
 CLH39_14930 3245475 .. 3245514 - -16.7  -3.71645   AACGGCACAGCCAAA  TAAAATGCCCCAAAAGC ACACAG GCTTTTGGGGCATTTTT   TATGCCTTGGCGCAA 100 43
 CLH39_14920 NONE
 CLH39_14915 3242516 .. 3242531 - -10.4  -5.21709   CTCCACAGCAAAAAA              GCCGCT CCGG AGCGGC               TTTCTCAGCACCAGA 100 57
 CLH39_14910 NONE
 CLH39_14905 3241166 .. 3241207 - -11.5  -4.13767   TCGGCTATTGTAAAA CGCTTCGCG-GCCTGTGCCA AAG TAGCACAGGCCCGCGTCGCT TAATGATTGCGACCC  91 25
 CLH39_14900 NONE
 CLH39_14895 3238252 .. 3238267 -  -4.6  -4.27441   ACTAGCACCAAGAAA              GGCTGG CTGA CAAGCC               AAAAGCCTTAGCCCT  63 33
 CLH39_14890 NONE
        priB 3237331 .. 3237345 -  -9.2  -3.14132   GTGCCTCGTTAGTAA               CCGGGC TAT ACCCGG               AAGAATTCAGTGTGA  65 82
        rpsR NONE
 CLH39_14875 3236483 .. 3236512 - -15.9  -4.74767   AGAATGAAGAGAAAA       CAAAAAAGCCGGC TTGC ACCGGCTTTTTTG        AGCTTGGCAGATACA 100 79
 CLH39_14870 3234834 .. 3234855 - -13.1  -5.52023   ACGATGAATAAAAAA           GAGGCATAC CAAG GTATGCCTC            TTTTTTGTCCTGACA 100 91
 CLH39_14840 3228672 .. 3228685 -  -6.7   -4.2123   GACTCATTGAACAAA               TCCGT CCTT ACGGA                ACATTTCTTTGATGC  71 0
 CLH39_14835 3227356 .. 3227369 -  -3.9  -2.88544   CGCCACGGGTAGAGA               TGTAA TTCA TTACA                GGTTCTCCACGCGCA  45 21
 CLH39_14830 3225854 .. 3225864 -  -5.4  -3.83026   TTCCTGCATAGCAAA                 CTGA ACA TCAG                 TCAGGCCAGCAGGAA  61 117
 CLH39_14825 3224766 .. 3224789 -  -3.8  -3.55444   CGGGCAGCGGTGAAA          CGCTGGTG GGGATTGT CATCAGCG           ATGCTGTGCGCCTGC  51 323
         alr NONE
 CLH39_14800 NONE
 CLH39_14795 NONE
 CLH39_14790 3217758 .. 3217770 -  -5.5  -3.85698   GGGCCCGTTCACAAA                CCAGG CTG CCTGA                CGACCACCCTGTCCC  61 196
 CLH39_14780 NONE
 CLH39_14775 NONE
 CLH39_14770 NONE
 CLH39_14765 3213175 .. 3213191 -  -7.9  -2.78018   ACTCCTTATCAATCA              GGCGCGA CGC TCGCGGC              GTACCTGCAAGCGGC  56 6
 CLH39_14760 3212776 .. 3212796 -  -8.1  -5.03994   TGGCAGATATAAAAA            TGGGGGGGC TTG GCCCCCCTT            GGTTTACTTAAGAAA  90 29
 CLH39_14755 3212014 .. 3212025 -  -5.8   -4.4261   TCTGTAACAGCAAAA                TGGC TCGC GCCA                 GCGCTTAATCCGTGC  71 78
        phoU 3211203 .. 3211232 - -19.5  -4.19735   TTTTTGAAAAGCAAA       CAAGCCTTGCATG GTGT CATGCAAGGCTTG        CAGCAAGAAGGCCCG 100 49
        hrpA 3203876 .. 3203895 -    -5  -3.03124   CGCTACGGGTGAATA            CCTTGAAA CGTA TTGCAAGG             CATTCAAACCCAAAG  51 107
 CLH39_14725 NONE
 CLH39_14720 NONE
 CLH39_14715 NONE
 CLH39_14710 NONE
 CLH39_14705 NONE
 CLH39_14700 3195564 .. 3195578 -  -2.8  -4.17417   TGAATGACAGACAAA               TACTCA GAT CGAGCA               TCTACAGGCCACAAA  59 133
 CLH39_14695 3194356 .. 3194380 - -10.8  -5.71983   CTAAGCATAAAAAAA          GCGTTCTGAA ATACA CTCAGAACGC          TTTTTACTACAGGCT 100 57
        msbA NONE
 CLH39_14675 3189889 .. 3189906 -  -9.1  -4.68601   ACTGAAAACAATAAA             CCCGCCT GAAA AAGCGGG              TCACGAGCAGGACAG  90 104
 CLH39_14670 3189043 .. 3189055 -  -4.8  -4.44667   TTCTGGAAGAAGAAA                GCCA GCACT TGGC                CGTGGCGGGCGACTT  70 289
 CLH39_14655 NONE
 CLH39_14650 NONE
 CLH39_14645 3184141 .. 3184182 -  -6.7  -3.28712   TCGTGGGTTGCATAA CCCAACGAGCAGTATTCTT GAAA AAGAACACTCTTCGTTGAA  TCTAGCGCCAGGTCA  58 110
 CLH39_14640 3180985 .. 3181005 -  -6.2  -2.58699   CAACAACTTAACTCA            CTACAACC TCAAG GGTTATAG            GATCAAGCCACACGG  50 6
         rrf 3180666 .. 3180700 - -23.1  -4.07568   TGTCGCCGCCTAAAA     CAAAACCCCCGCAAG GGATG CTTGCGGGGGTTTTG     AGGAATAAGAGCTTG 100 36
 CLH39_14625 3178020 .. 3178045 - -11.2  -3.55622   GTGAACTGCTGGAAA         GCGAGGCGGCT CAACT AGCCGCCTC-C         AGGGGGACGGAAGCC  74 446
 CLH39_14615 NONE
 CLH39_14610 3174505 .. 3174527 -    -9  -3.19003   AGAAGATGGCAGCAA           GGGCCGCATG GTT CGCGCGACCC           CCAGCAAGGCACTGA  67 410
 CLH39_14595 NONE
 CLH39_14590 3171533 .. 3171555 -  -9.9  -5.25976   AACCAAAAAAACAAA          CCCCCAGGCT CGAA AGC-TGGGGG           GATCAGTACTCCAAG 100 67
 CLH39_14580 3170599 .. 3170622 - -13.9  -5.29846   AACGGCAAATAAAAA          CAGGCCAGC TTTGCG GCTGGCCTG           CCAATAGTCCAAGCA 100 103
 CLH39_14565 3166970 .. 3166991 - -13.1  -5.14563   GGCCTCATGAAAAAA           GCCTCTTGA TTGC TCAAGAGGC            CTTGTCTGCAAGATC 100 56
 CLH39_14555 3165014 .. 3165049 - -18.4  -4.13767   TCCTTTAGCCGAAAA    GACAGCGGGACTGCAT GTTG ATGCAGCCCCGCTGTG     GCTCTTTTCCCCTGA 100 119
 CLH39_14530 3160078 .. 3160115 - -25.1  -5.24129   CCCGGCGACAAAAAA   GCCCCTGTCAGTGAAAG TTAT CTTCCACTGACAGGGGC    TTTTTACATACCTGT 100 42
 CLH39_14515 NONE
 CLH39_14510 NONE
 CLH39_14505 3157311 .. 3157336 -  -8.2  -3.03243   AGGGATTGGTGAATA         TGGAGCCGGA TCAAGT CCCGGCTCCC          ACAACCCATTTGGGC  62 62
 CLH39_14495 3154479 .. 3154499 - -16.9  -5.75342   CCCGGCGAAAAAAAA            CCCCACCTC TTT GAGGTGGGG            CTCAGTGACAACGAA 100 49
 CLH39_14490 3152395 .. 3152423 - -15.4  -4.00042   CCCGGCACCAAACAA        CAATCCCCTCGC TTTTG ACGAGGGGATTG        TTCACTATCAAGTTC 100 71
 CLH39_14465 3145329 .. 3145349 -   -14  -4.39166   GCGCAGACAGCAAAA            GGGCCCGT AATGA ACGGGCCC            TTTCTTATTGCCATA 100 44
 CLH39_14455 NONE
 CLH39_14450 NONE
        motA NONE
 CLH39_14440 3141241 .. 3141265 -    -5  -5.64321   ACAACAAAACAAAAA         GCACAGCCCAA ACAC CTGGGCCGT-C          GGGCCTGTTAACAAG  95 43
 CLH39_14435 NONE
 CLH39_14430 3138506 .. 3138524 -  -8.1   -2.7555   TAGATCCGAACATCA             GAGGCGC TTGTG ACGCCTC             CCCCGGCCCGAACAT  59 99
 CLH39_14425 NONE
 CLH39_14420 NONE
 CLH39_14415 3134773 .. 3134790 -  -2.5   -2.8805   AGGACCGTTTATACA             CGGTGCC CAAA GGCCCCC              ACACTGGCCAGAATT  41 1
 CLH39_14410 NONE
 CLH39_14405 3133611 .. 3133645 -   -18  -3.28712   GGCTGTTCCCCACAA     GCAAAAAGGCGCTGCA AGG TGCAGCGCCTTTCTGA     GGCGAACGCGATGAT 100 57
 CLH39_14400 NONE
        flhA NONE
        flhF 3127811 .. 3127828 -  -8.3   -5.4492   GACAGACATAAAAAA             GCCTGCC ACAC GGCGGGC              TTTTTCAATCTTGCT 100 45
        flgC NONE
        flgD NONE
 CLH39_14355 NONE
        flgF NONE
        flgG NONE
 CLH39_14340 NONE
 CLH39_14335 NONE
        flgJ 3118288 .. 3118302 -  -3.4  -3.06796   CCGTACCGTAGCTAA               CCAGAG CCG CACCGG               TAGTTTGCGAGCGCA  44 369
        flgL 3115466 .. 3115478 -  -5.5  -4.71186   AGCAGCAATACAAAA                GGTCA TGC CGACC                TTTAGACTCAAATTC  73 120
 CLH39_14315 NONE
 CLH39_14310 NONE
 CLH39_14305 3111911 .. 3111921 -  -4.6  -3.53012   TTTTTTCCCCTCAAA                 GCGC TTA ACGC                 AAACGATCGTAGTCG  54 19
 CLH39_14300 NONE
 CLH39_14295 3109151 .. 3109164 -  -4.5  -3.08133   GACCCAGCTATTCAA               CTCCG GCTA CGAAG                CCATGATGCGGGTCG  47 60
        fliA 3091805 .. 3091826 -   -13  -4.92783   AATGCACGACAAAAA           GCCAGCCC GTTAAT GGGCTGGC            TTTTTTACTCTCACG 100 227
 CLH39_14175 NONE
 CLH39_14170 NONE
 CLH39_14165 NONE
 CLH39_14160 NONE
 CLH39_14155 NONE
 CLH39_14150 NONE
 CLH39_14145 NONE
 CLH39_14140 NONE
 CLH39_14135 NONE
 CLH39_14130 NONE
 CLH39_14125 3070485 .. 3070508 - -16.8   -3.6053   CTGTCCAGAAACGAA          TCAGCCTGGG CGAA CCCAGGCTGA           TCACGGCACATCAAC 100 52
 CLH39_14120 3068788 .. 3068811 -    -3  -3.53091   AGCCGTGGGGGCAAA          GCGCTG-AGCG TCT CGCTGCCCCGC          CCCGTCCTACTCCTG  49 145
 CLH39_14110 3066790 .. 3066820 -  -2.6  -4.17089   CTCAAAGTGCCAAAA      CAGCGAAT-GCCC GCCTGG AAGCGATTCGCCG       CTAAACCATAAAATC  57 26
 CLH39_14100 3063643 .. 3063657 -  -2.8  -2.77899   CGGGGGCATTAATTA               TGCTCA TTA TGAGTA               TTTAAATCGCTAAAA  41 112
 CLH39_14095 NONE
 CLH39_14090 3061535 .. 3061554 -  -7.8  -3.05596   TATTGGCCCAGGTAA            GCCCAAAC CGCT GCCTGGGC             CTCACACTGTCTGAG  59 179
 CLH39_14065 3055165 .. 3055182 -  -8.4   -5.4833   GCAGGCAAGAAAAAA             GCCACC GCATCG GGTGGC              TTTAATGTCCTGATT 100 55
 CLH39_14035 3049557 .. 3049578 - -15.9  -5.80727   AAAAACAATAAAAAA           CGGCCCACA TTCC TGTGGGCCG            TTTTCTTTATCTTGG 100 321
        tauA 3047801 .. 3047814 -  -2.3  -2.86271   GCGCCATCAGAATTA               CCTGG CCAG CGAGG                CAGCCGCCTCGACAT  39 9
        tauB NONE
 CLH39_14015 3045736 .. 3045755 -  -2.7   -4.1899   GGACGTTATGGAAAA            GCCGAGG AAATTG CCGCGAC             AATTGCGTTTTTGCT  59 370
 CLH39_14005 NONE
 CLH39_14000 NONE
 CLH39_13995 3043582 .. 3043605 - -13.9  -5.64274   GTACGCATAAAAAAA          GCGCAGCGT GTCTAT ACGCTGCGC           CTGCAAAAAACCTAA 100 51
 CLH39_13990 NONE
 CLH39_13985 NONE
 CLH39_13980 NONE
 CLH39_13975 3037900 .. 3037923 - -15.4  -4.15565   CCCATGAGCTTAAAA          GCGATAGTGG TCCG CCACTATCGC           TTTTTTATGCGCCCC 100 68
 CLH39_13950 3031417 .. 3031442 - -13.4  -4.82901   TTCTTCTTACAAAAA         CGGCAGACAT GGTTTG ATGTCTGCCG          TTTTCCTTTACAGGG 100 33
 CLH39_13920 3026604 .. 3026619 -    -6  -4.00476   GAAACGGATGACAAA              GCCCCC ATCA GCGGGC               CCACCGGCGCTCATC  66 414
 CLH39_13860 3015486 .. 3015510 - -13.6   -5.8187   CACGCAATAAAAAAA         GGCCGGAGCCC ATCA GGG-TCCGGCC          TTTTCTGTTTGACGC 100 71
 CLH39_13845 NONE
 CLH39_13840 NONE
 CLH39_13835 NONE
 CLH39_13830 3008940 .. 3008970 - -18.4  -5.10163   AAGCCCAAAACAAAA       CCGCCTCAGTTCCC AAA AGAAACTGAGGCGG       TCTCATCTTCAAACA 100 62
 CLH39_13800 3001527 .. 3001558 - -11.7   -4.7254   ACTTGGGAGCAAAAA      TAAAAAGGGAGCC ATGCAA GGCTCCCTTCTCA       TGTAGCAACCCCTAC 100 50
 CLH39_13775 NONE
 CLH39_13770 NONE
 CLH39_13765 2992851 .. 2992864 -  -3.1  -4.17023   TCAAGGACGGGAAAA               TCACC TCTA GGTAA                TGAGGGTTATCAATC  59 35
 CLH39_13760 2991135 .. 2991162 -  -9.2  -4.82901   TGGTTTTCAGAAAAA        GGGCTAGTGT AAAGGGGA ACACCAGCCC         TTCCCAAGCCCTGCT  91 41
 CLH39_13755 2990369 .. 2990399 - -19.9  -5.03715   ATCACTCCGAAAAAA       TGCCCGACCAGAA TCTGC TTCTGGTCGGGCA       TTTTGCTATCTTGAT 100 120
 CLH39_13725 NONE
 CLH39_13720 2983008 .. 2983026 -  -6.7  -5.42514   CCATAAAGTAAAAAA             GCAGGAA ACCAG CTCCTGC             TTTCTGCTCACCATC 100 79
 CLH39_13715 2982382 .. 2982401 - -10.8  -4.15543   CAAATACCTGGAAAA            CTAAGCCT TTAC AGGCTTAG             CTTGTCCAGTTAGCG  88 44
 CLH39_13705 NONE
 CLH39_13700 2977338 .. 2977374 -  -9.4  -2.62184   CTTCTGTGCAGACTA   CAAGTCCCGCTTCGGGC GTTC GCCCTC-GCAGGACTTG    CGTATCGTGGATTAG  61 37
 CLH39_13690 NONE
 CLH39_13685 NONE
 CLH39_13680 NONE
 CLH39_13675 NONE
 CLH39_13670 2971386 .. 2971407 -  -5.8  -2.72263   ACACCTTTTTTAAAT           TGCCCTGA ACGGGG TCAGGGCT            TGTGAACACGCCACA  51 90
 CLH39_13665 2969682 .. 2969736 - -25.2  -3.68222   GCTGAATGCCAAGAA GCAAAAAAACCGGCCAGAGCAGGTGC AAA ACACCTACCCCGGCCGGTTATTCTGC CTGCAGGTATCAAGC 100 64
 CLH39_13660 NONE
 CLH39_13655 2967044 .. 2967054 -  -2.4  -3.20435   TCAATCATTCAGCAA                 GGGG TTG CCGC                 TTTCATTCTGGCTGG  44 0
 CLH39_13650 2964584 .. 2964597 -  -2.3  -4.12902   CAATCACTGGGAAAA               CCCTA AAGG TCGGG                GTCTTCGGCCCTGTC  57 14
 CLH39_13645 2963192 .. 2963211 -  -2.1  -3.66908   TTCCTTGAAAATCAA            TC-GGCCA ACTGA CGGCCAGA            GGTTTCCTGCACCGT  50 2
 CLH39_13640 NONE
 CLH39_13635 2961618 .. 2961642 -  -4.3  -3.18912   CCACCCAGCTATTAA         GCACGAGCAC TAGGCG GCGCT-GTGC          AGCTGGGCCTGAATC  50 10
 CLH39_13610 2954208 .. 2954249 - -23.3   -2.9704   ATAAACAGCCAGACA TCAAACAAACAGGCCCACG CTAG CGTGGGCCTGTTTGTTTTA  GGGGCTGATCAATTA 100 38
 CLH39_13570 2948550 .. 2948598 -  -5.2    -4.258   GCACCCAGCAACAAA CCTGAAGCCCGGGCTTCTTGCT GTTTG AGCAAGTTACCCAGGCCTGAAA AGCGCTTATTTATCC  66 31
 CLH39_13560 2948015 .. 2948027 -  -9.1  -3.20858   CAGCACAGGTAGCAA                GCGCT ATC AGCGC                AAATAAGGGGGCAGC  67 54
 CLH39_13540 2946595 .. 2946617 -  -9.9  -4.56597   CGGCGTTCGTAAAAA          GC-TGGCAGC GCAG GCTGCCATGC           ATGATGCGGCTTAAC  90 36
 CLH39_13530 2944571 .. 2944585 -    -5  -3.23708   GGGTTGGAAAAATCA               GATATC GAT GACATC               GTCTATCTCCTCGCG  53 8
 CLH39_13525 NONE
 CLH39_13520 NONE
 CLH39_13515 NONE
 CLH39_13510 2942822 .. 2942846 - -10.8  -5.64274   CCAGGCATAAAAAAA         CCCCGCAGCAA TTTC TTGCT-CGGGG          TTGTTTCGTTTGCAT 100 86
 CLH39_13505 2942277 .. 2942291 -  -7.1  -6.11644   GCAGGCAAAAAAAAA               CCGAC GCGAG GTCGG               CACAAAAAAACAGGT 100 47
 CLH39_13500 NONE
 CLH39_13495 2940456 .. 2940471 - -10.4  -5.71712   CTCCAGATAAAAAAA              CCCTGC CAAA GCAGGG               AAAACCGCACATAGA 100 389
 CLH39_13490 2937143 .. 2937168 - -17.7  -5.96894   ACTGAAATAAAAAAA         GCCCGTTGGAT CCAT ATCCAACGGGC          CTGATGTTCGTGAAA 100 81
 CLH39_13485 NONE
 CLH39_13480 NONE
 CLH39_13475 NONE
 CLH39_13470 NONE
 CLH39_13465 NONE
 CLH39_13460 2928006 .. 2928022 - -12.3  -5.63504   AACTCCATAAAAAAA              GCCGCTT CTC AAGCGGC              TGGGTACTTTTCTTT 100 183
 CLH39_13455 2927594 .. 2927607 -  -9.5  -5.76633   GCAGACATAAAAAAA               CCCGC TCAA GCGGG                CCGGGGGAACAATAT 100 87
 CLH39_13450 NONE
 CLH39_13445 NONE
 CLH39_13440 2926207 .. 2926223 -  -5.1   -3.6135   AAAGATAGTGTGAAA              TGGCAAA TGA TCCGCCA              TATCGCCATCGTGAC  53 203
 CLH39_13430 2925238 .. 2925251 -  -5.9  -5.52079   ACACGAAAATAAAAA               GCGGC CTGC ACCGC                GACCCGGCCAGTGTA  95 110
 CLH39_13425 2924583 .. 2924620 - -12.8  -2.80113   GACGACCTGATCACA   TAGCCCCAAGGTTGGA GTTGAT TCCGACTTTGGGGCTA    TTTATTTCAGGAACA  77 278
 CLH39_13410 2921495 .. 2921511 - -13.7  -4.93333   AAGGAAAACAGAAAA              CGCGGCT TTA AGCCGCG              TTTTTCCATACCTGC 100 53
 CLH39_13385 2916688 .. 2916711 - -11.8  -3.55444   GCCTGATCTCGGAAA          TAGAGCTGAC CGAC GTCAGCTCCA           GTTTCGCCATGGAGC  77 100
        metC 2914929 .. 2914948 -  -9.3   -4.2828   CGCCAGGCAGGAAAA            CCAGCAG TTAAGC CTGCTGG             GCAACTAAACGCAGC  83 13
 CLH39_13350 2911274 .. 2911307 - -16.2  -5.94713   ATCCCATAAAAAAAA     CACCCCAATATCGG ATTCAA CCAATATTGGGGTG      TTTTGATACTGCTGC 100 90
 CLH39_13315 NONE
        kdpF NONE
 CLH39_13305 2902571 .. 2902582 -  -2.2  -3.81256   ATCCTCAAAAAGTAA                TGCC ATCG AGCA                 TCAACAGGTGCTCCA  53 3
 CLH39_13300 2901539 .. 2901557 -  -6.7  -3.28712   CGCTTGCGCGTAGAA            CGCAGCGC GTCG GC-CTGCG             CTTTACCACGCCCTT  58 341
 CLH39_13290 NONE
 CLH39_13285 2896158 .. 2896176 - -13.2  -5.04175   TCAATGACATAAAAA             GGGGATAC GTC GTATCCCC             TTTTTAATACCGGAT 100 205
 CLH39_13275 2894557 .. 2894589 - -10.7  -5.00616   TTGCCGTGTAAAAAA     CAAGTCGCCTACCG TTTTAG CGGT-GGCGACTTA      TTGAATGAGCTGTCT 100 44
 CLH39_13220 2885134 .. 2885155 -  -3.7  -6.06723   CCTTCTAAAAAAAAA           CCGTGTTTGG TAT CCAA-CAAGG           ACGACGCAGCCTAGA 100 36
 CLH39_13215 2884460 .. 2884480 -    -9    -5.626   GACGCCATAAAAAAA           CCGCCA-GC ATGC GCATGGCGG            TTTTTTTATTGCCGG 100 78
 CLH39_13205 2882746 .. 2882757 -  -3.6  -3.26868   CATTAAGAAAACAAG                GCGC GCTC GCAC                 AGGAAAGCAGACGGA  48 121
        pcaF 2881221 .. 2881243 - -14.9  -5.04175   GCAAGCAGACAAAAA           GGCCGGTGA GAAAA TCACCGGCC           TGCCTGCCCTGCAAC 100 46
 CLH39_13185 2880001 .. 2880011 -  -5.4  -3.69332   GAACAATACGGTAAA                 CCAT TAA ATGG                 TCAAGCATCAGGCAC  59 26
        clpA 2877508 .. 2877543 -   -22    -3.551   TCGCAACGCACACAA    CGAGCGAG-CCCCGCTC CTT GAACGGGGACTCGCTCG    TGTACGGTGTCACAG 100 79
 CLH39_13175 NONE
 CLH39_13170 NONE
 CLH39_13165 2874016 .. 2874038 -  -7.8  -5.36441   CCCGCACAGAAAAAA           GTTAACCAAC AAG GTTAGCTAAC           GCAGAGCATGGCTTT 100 17
        putA 2870040 .. 2870050 -  -5.4  -3.01712   CTTCGTTTTTTAATA                 TAGC CGC GCTA                 CATGTCGGCCCGTGC  49 120
 CLH39_13155 2868820 .. 2868837 - -11.3  -3.38224   AGGCCACGGTAAAGA             TGAGCCC CGAA GGGCTCA              AACTGCAGGATCAGA  77 46
 CLH39_13150 2867716 .. 2867755 -  -3.5  -3.30443   CCAGCACCACACCAA TCAGCAGCGCACCGACCCA GACT TTGG-CGG-GCGTTGCGGA  GCGCTGCTTGGAGCC  48 67
 CLH39_13145 NONE
 CLH39_13140 NONE
 CLH39_13135 2865075 .. 2865104 - -20.9  -5.18355   TGCAAAAAGCAAAAA       CGCCAATCAGCCT AAAA AGGCTGATTGGCG        TTTTCTTTAAAGATC 100 48
 CLH39_13130 2863089 .. 2863104 - -10.4  -4.66953   TCAATACTTGAAAAA              CCGCCT CTCT AGGCGG               TTTTTTTGCGGTTTG 100 259
 CLH39_13115 NONE
 CLH39_13110 2857589 .. 2857601 -  -4.7  -4.20136   AGGGGCAAAAGCAAA                GCCGC TTC GTGGC                CTGGACTTTTCTGGA  64 201
 CLH39_13075 2849750 .. 2849765 -  -3.9  -3.47713   CAAAAATTCCAAATA              GCCCG CTCAAT CAGGC               GGGGAAATAAAAGCC  50 20
 CLH39_13070 2848282 .. 2848293 -    -3  -2.75382   TAGCCCACCTAACCA                GTTA ACAA TAAC                 ACTATTTAAGGACGA  41 53
 CLH39_13065 NONE
 CLH39_13060 2844640 .. 2844660 - -18.3  -5.26316   GCAGGCCATAAAAAA            GCCCCCGGA GTT TCCGGGGGC            CTTCAAACTGCGATT 100 67
 CLH39_13055 2843080 .. 2843096 -  -2.3  -3.28791   ACGGGGCGGGTACAA              CATTCAA GAC TTAAACG              ACCGTGACAGCCAGC  44 19
 CLH39_13050 2842650 .. 2842701 -  -5.2  -5.10208   CAATGCCAACAAAAA GCCGCCTACCGAATTTCTGCCTCC GGATCA GGAGA-AGAAAGG-GGAAGGCGGC TAGCGTCTGACTACA  83 52
 CLH39_13030 NONE
 CLH39_13025 NONE
 CLH39_13020 2836356 .. 2836389 - -15.3  -4.73108   TTCATAAAAGCAAAA     GGGACTGAGCTTGCC GTTA GGCAGTCTCAGTCCC      TTTTTAAACCTTAAA 100 71
 CLH39_13010 2834060 .. 2834086 - -11.7  -5.24531   ACTCCTGAGAAAAAA        GGCGCCATATCT ACAA AGAT-TGGCGCC         TTTTTGTTGGAAGCT 100 316
 CLH39_12980 2827370 .. 2827398 -   -11   -5.4182   AAGCAGAAACAAAAA       GGCCCCCGGA-GC TCTG ACATCCAGGGGCC        TGCACTGCCCGCCTC 100 74
 CLH39_12970 2825526 .. 2825546 -  -5.4   -4.7173   CAGTATAGGGAAAAA            TGCAGCAC AGCAA GCACTGCA            TTTCGCCGCACTCAA  73 125
 CLH39_12965 2823436 .. 2823446 -    -4  -3.72027   ACTGGCGATCAAGAA                 TATC TGC GATA                 CCGCGGACCGCTTCT  54 283
 CLH39_12955 2822420 .. 2822440 - -14.7  -4.23999   TCAGATTCAAAAGAA            CGTGCCCCC AGT GGGAGCACG            TATTTATTTCTGACT 100 105
 CLH39_12950 2821378 .. 2821391 -  -8.1  -5.10665   ACTCAATAAATAAAA               TGGGC TAGT GCCCA                CACGCCAAGGTGCCT  93 44
 CLH39_12940 2820549 .. 2820566 -  -7.7  -3.78934   CGTTTGGCAGAACAA             CTC-CGGC ACT GCCGTGAG             AACTCCCTTTTACAG  67 35
 CLH39_12935 2819327 .. 2819345 -  -6.7  -5.55769   CTCTATAAGAAAAAA            CCG-CGCA ATTT TGCGGCGG             TTTTCCAGTGAAAAT 100 243
 CLH39_12930 2818594 .. 2818615 -  -5.8  -4.75372   ATCAGGCAGCAAAAA           GGCCCAGT TTTCAC ACCAGGCC            TTTTTTACTTTCCAA  78 57
 CLH39_12920 2816159 .. 2816176 - -10.5   -5.4251   CGCAGACACAAAAAA             GCCGCCC TTGA AGGCGGC              TTCCCGATTAAATCC 100 303
 CLH39_12905 NONE
        clpP 2811362 .. 2811382 - -10.4  -4.15565   TTCAGGATGGTAAAA            GGACGGGA ACAAG TCCCGCCC            CCGAACAGCCATAGT  88 75
 CLH39_12895 2809790 .. 2809807 - -11.3   -4.2349   TCCTTAGACGCAAAA             GGGAAGC CTGG GCTTCCC              TTTCACGGTTTAACC  91 248
 CLH39_12890 2807228 .. 2807266 - -16.3  -4.26076   TCAGCCTGACCAAAA  TGTAAACAGGCTACCTTG AACC CAAGGCAGCCTGTTT-CA   CTGCTTGCTGACTAC 100 50
 CLH39_12870 2802020 .. 2802041 -  -5.1  -3.94853   TAAGGCAAGACGAAA           CCGGGGT AAAAACAG ACCCCGA            AAATCGCCTTGAAAA  61 258
 CLH39_12865 2801369 .. 2801400 -  -5.8  -3.71649   TTGCCAAAGGCGAAA      GCGGCCGGAC-TGCC AAC GGCAAATCCGACCAA      TTTGGTCCAGTATAG  62 110
        iscR NONE
 CLH39_12855 NONE
 CLH39_12850 2799226 .. 2799250 -  -3.6  -3.85698   TTTCCTTTCTATAAA          CCTGAAAG AATATTCAG CCTTCAGG          CTTGGACAACTAAAA  57 35
        iscA NONE
 CLH39_12840 2797907 .. 2797924 - -11.3  -5.79595   TGCCAAAACAAAAAA             GGACGCT CGAA AGCGTCC              TCTTTTTATTGCGAA 100 98
 CLH39_12835 2796541 .. 2796560 -   -15  -5.10064   CTCAAGACAGAAAAA            CGCGCGGT CTTG ACCGCGCG             TTTTTTTATGCATCC 100 155
 CLH39_12805 2789263 .. 2789284 -  -5.7  -5.04601   TCCACAAAGTAAAAA           GGGACGCTC TACC GGGCGTCCT            TTTTTTGCATCCAGC  81 72
 CLH39_12795 2787009 .. 2787029 -  -3.3  -2.57132   TTGTGTGGGTATAAG           TCAGG-GC GATTTG GCTCCTGA            ACGCTGCGGCAACGT  40 5
 CLH39_12790 2785090 .. 2785111 -  -2.4  -2.87725   GGTTAAAAACAATAC           GATATAAA TTCTTG TTCATATC            ATCACACTCTGGATC  41 70
 CLH39_12785 NONE
 CLH39_12780 2775783 .. 2775823 -  -3.9  -3.96148   TCCTCTGAGTAGAAA  CGCGTAGGTGGAGGCTA TATGTAC TAGCCTCCACCTTAGTT  GAAGAGTTCATAACA  57 87
 CLH39_12775 2773801 .. 2773811 -  -5.4  -2.61374   AACAGGCACAATCCA                 TACC TTA GGTA                 ACGAAATACCTAGCG  47 204
 CLH39_12770 2772448 .. 2772462 -  -2.1  -3.23869   CACGATGGGAGAATA              CG-AGG CAAA CCTACG               CAGAATCAGCACTGC  44 200
 CLH39_12755 NONE
 CLH39_12750 2767632 .. 2767667 -  -3.9  -3.54424   CCTCAGCCCCTCAAA    GGGAAGGACGCGG TATGACAGCC CCACGCCCCTGCC     AGGTATTAGACCCGG  52 31
 CLH39_12745 2766752 .. 2766765 -  -2.3  -4.87626   TGGCAACATCAAAAA               GCCTG CCCC CAGCC                TAATACCCCTGGCTA  68 25
 CLH39_12740 2764044 .. 2764058 -  -6.4  -4.13648   AATTTGACAGATAAA               GGACTA TTG TAGCCC               AGCCCGAGGGCTTTA  68 63
 CLH39_12735 NONE
 CLH39_12730 NONE
 CLH39_12725 2761415 .. 2761466 -  -4.7  -4.84918   GGGAGAAATAGAAAA CACGCCATTTTAACCGGAAGCGAC ACAAGAG GTCACAT-CGGT-AAA-TGGCGTG CACAAAAAGGGAAAA  74 171
 CLH39_12720 2757304 .. 2757321 -  -6.3  -2.87261   CAAAAATCGATTATA             CGCGTAA GCAA TTACGCA              ATCCAGACCCGAGCG  52 19
 CLH39_12715 2755761 .. 2755782 - -13.7  -6.06529   GATACACAAAAAAAA           CCGCCAACC CAAA GGCTGGCGG            TTTCTGGCATGCAAG 100 54
 CLH39_12705 2753047 .. 2753061 -  -5.6  -3.48395   ATCTCCTGCATACAA               CCCACT TTC AGAGGG               GTTGATACCTCACGT  55 151
 CLH39_12695 2750489 .. 2750506 - -10.5  -5.03145   GAATTGCGCAAAAAA             GCCCGCA GTTA CGCGGGC              TTAGCGGCTTTTTAT 100 74
 CLH39_12685 2749513 .. 2749535 -  -2.6  -4.12188   CTATCAGGGGCAAAA           CCACACCCCC ACA GGAAATGTTG           GCCACGGAAAGCATG  55 44
 CLH39_12680 2748317 .. 2748333 -  -2.1  -3.15663   ATGTAGGGTCACCAA              GCCTAGC GCT GCAAGGT              GATTTCAAACTTTCC  42 11
 CLH39_12675 2745663 .. 2745688 -  -8.4  -3.78087   AAGTAAAATGTGAAA         GCGGGTT-ATC TGAAG GATGAACCCGC         CATGGGGTGCGAACA  70 101
 CLH39_12660 2741467 .. 2741487 -   -14  -5.42259   TCAGCCTCAAAAAAA            GTCCCGGC ATTTG GCCGGGAC            TTTCCGCCAAACTCA 100 54
 CLH39_12655 NONE
 CLH39_12650 2739152 .. 2739204 - -14.5  -4.64676   GCAGCCCCAATAAAA CTGCCCCCAGCA-ACAG--C-GATGGC AAA GCCATCAATACTGTTTGCTGGGGGCAG TCTGAAACTCGCTAG 100 60
 CLH39_12645 NONE
 CLH39_12640 2736537 .. 2736578 - -17.5  -3.59979   CCGTCGGACTTCAAA GAACAAGGGCTATCCCGGAC TTG GTCCAG-ATAGCCCCTGCTC ACTCCAGGATCTACA 100 52
 CLH39_12630 2735213 .. 2735229 -  -6.5  -5.72622   TTGACAAAGAAAAAA              CCCTCTT GCA AGGAGGG              CTTGACGATCAGGAC 100 154
 CLH39_12625 2733910 .. 2733921 -  -2.2  -4.11394   AGGCCAGTCTGAAAA                CGGA TTCG TCCA                 TGTTGTCCAGGTGCT  55 56
 CLH39_12620 2732772 .. 2732788 -  -2.2  -2.71731   CGCAGCTCCCAAGCA              CGGG AGCGACATA CCCG              CTCAAATGGACATAT  39 124
 CLH39_12615 NONE
 CLH39_12610 NONE
 CLH39_12605 NONE
 CLH39_12600 NONE
 CLH39_12595 2729226 .. 2729246 -  -4.6  -3.75024   TTTCATCAGCAAGAA            GGCAAACC TTTAC GGCTGGCC            GCCCTGGCTCCCTGC  56 426
 CLH39_12585 2726839 .. 2726862 -  -8.9    -5.252   TAGCTCCACAAAAAA          CAAAGCCAC AGACTA GTGGCTTCG           TTCAGGCTTCATCCA 100 136
 CLH39_12575 2723443 .. 2723460 - -12.7  -5.65513   CATTAACCAAAAAAA             CCGGGCA TAAC TGCCCGG              TTTACTTTTAAAAAC 100 47
 CLH39_12545 2716550 .. 2716598 -  -6.9  -4.27584   ATCTTGAACTCAAAA GCCAGGCCGATTTCAACCTG-TG GACCG CAGCACATC-AAATCGGCCCGGC TCTCTGGCCCAGGCT  71 106
 CLH39_12530 2713982 .. 2714006 - -13.7   -2.7386   AATTTATTGCAATCA          CTCAAGTGCGT GAA ACGCACTTGAA          AACCAATTTAAATTA  79 38
 CLH39_12525 NONE
 CLH39_12520 NONE
 CLH39_12515 NONE
 CLH39_12510 2709124 .. 2709141 -  -4.1  -3.40403   GCGGCTGGAGCAGAA             CTGTGGCG TCT CGCC-CAA             TGATCTGATCATCGC  49 129
 CLH39_12495 NONE
 CLH39_12490 2705900 .. 2705919 -  -2.8   -3.9461   GTGTTTGAAGAAGAA            CTGGTGCT GGTC AGCAGCAA             GGCGGTGGAATCCCT  58 489
 CLH39_12475 2704154 .. 2704164 -  -6.8  -3.67877   ATCGCGCAACAAATA                 CGGT CGA ACCG                 TTGCGCCTTCACCTC  64 44
 CLH39_12470 2703566 .. 2703586 - -11.1    -5.626   TAGCGCACAAAAAAA            CAGGCCGCA TCA CACGGCCTG            TGGTCCCTCTTTTGA 100 79
 CLH39_12465 NONE
 CLH39_12460 2702214 .. 2702232 -    -3  -5.26316   GCACGGGATAAAAAA             GGCAGGAA GGG CCCCTGCT             TTTTCGTGACTGACC  80 168
 CLH39_12450 2700231 .. 2700251 -  -8.9  -2.50471   CAAATATCCAAAACT            TGCTGGGGC TTT ACCCCAGCT            TTTTCTGACAAACCT  61 49
 CLH39_12435 2698111 .. 2698124 -  -5.9  -3.95986   TGCAAGCCAACTAAA               CCCGG CGTC CCGGA                ATCAGAACGGCTTCA  64 27
 CLH39_12380 NONE
 CLH39_12375 2683519 .. 2683558 -  -3.6  -4.78764   GAAACGGAGCAAAAA  CGATGAACGCCAGCGCA ACCTGCA CACGCTGGCGTTT-TCA  GACCCTGACTTACTG  72 35
 CLH39_12370 NONE
 CLH39_12365 2681779 .. 2681797 - -12.4  -2.88427   AACAGCCGGGACACA             CGCTCCCC TTG GGGGAGCA             ACGCTGCTCCCTAGA  76 36
 CLH39_12360 2681449 .. 2681460 -  -5.8  -2.78495   CACCATGAAAATCCA                GACC AGAT GGTC                 TTAGCCCCCTGCTAC  51 26
 CLH39_12355 2679569 .. 2679580 -  -2.2  -4.87665   CGTGATTCATAAAAA                CCTC CAGG GAGA                 ATTAACAGACGAATA  68 5
 CLH39_12350 NONE
 CLH39_12345 NONE
 CLH39_12340 NONE
 CLH39_12335 2674428 .. 2674459 -  -8.1  -2.93858   CATCATACCGATAGA     GCC-GC-CCCCTTGA GCAT TCAAGGGGAGCAAGC      AAACTGTCTATGGCC  60 46
 CLH39_12330 2673797 .. 2673829 - -11.4  -3.84719   ATCGTCAAATGCAAA     GCAGGCCACAAC-CA TTTC TGTGTTTTGGCCTGC      TTTTTGCAATACAAA  84 77
 CLH39_12315 2672549 .. 2672587 -  -5.1  -4.32804   AGAAGCAAGGGAAAA  CGGGTCGGGCG-ATGGCC TGCA GGCGATGCGCCCCGCCCC   TGATGCCATCAGGCT  69 40
 CLH39_12310 2672246 .. 2672267 - -10.9  -4.85599   TTCAGGCGATAAAAA           GGCTCCTTG AGCA CAAGGAACC            TTTTCAAGGAGCAGG 100 76
 CLH39_12305 NONE
 CLH39_12300 2671325 .. 2671338 -  -2.3  -2.52742   AGTTCCTCACAACAC               CAGCT ATTC AGCAG                CAACAAAAGTACGAC  38 78
 CLH39_12290 2667984 .. 2668037 -  -9.8  -3.15999   TGTGGATACACGCAA GATTTG-CCT-GACGCTGACTCCCGC CGGA GAAGAAGCCAGCATCAAGGCCAAATC AACCTTGCAGGACTT  64 365
 CLH39_12270 2664477 .. 2664487 -  -4.6  -3.90291   AGTGTTCCAAGCAAA                 GCCG CTA CGAC                 TGGCTTCTTATTGCG  59 42
        catA 2663441 .. 2663495 -   -13  -4.81551   CAGGCACAGCAAAAA CAAGTCAGCCCAGGGCCTG-GTTTG ATTTGG CAAACACAGGCCCTGGACTGAAGCA AGACTTAGGCAGCCA 100 30
 CLH39_12260 NONE
 CLH39_12255 NONE
        pcaD 2661172 .. 2661183 -  -3.6  -4.40561   CCTTTCTAAAAACAA                GCGC TCGG GCAC                 TCAGGCCTGGGCTAA  64 26
        catC 2660882 .. 2660899 -  -6.9  -3.46068   TGCGTAACTTAAATA             GCCGACG GGTG CGTCGCC              AAGGGAGTCACGGAA  60 1
 CLH39_12240 NONE
 CLH39_12235 NONE
 CLH39_12230 2656659 .. 2656695 -  -9.7  -4.46775   GATTTAAAACATAAA    TATCGAAATGCTAACAA TTC TCATTAGCATTTCAACA    AATAAGCCACAATCC  90 123
 CLH39_12225 2655534 .. 2655565 -  -8.9  -5.79588   CCAAAACCAAAAAAA      CAGCCTGAAACAAG ACAAG CTTGTT-CAGGCTA      TTTCTCCGCGTGGAC 100 45
 CLH39_12220 2654633 .. 2654647 -  -2.8  -3.57561   TCTGAACGGCGGAAA               GAATCC GTA GGATTG               CCGAATTTATGGGCT  49 58
 CLH39_12215 2653330 .. 2653346 -  -9.4   -3.5399   ACCAGACGCACAGAA              GCCGCT GTGAA AGCGGC              TCTGAATCACTGGTA  70 142
 CLH39_12175 2643693 .. 2643703 -  -2.4  -3.00022   GGCAGGCCAGACACA                 GCGG GAC CCGA                 TCAGATTGATGCGCT  41 79
 CLH39_12170 2642111 .. 2642135 - -15.8  -5.71983   GCAACCATAAAAAAA          CATACCCGGC TATTC GCCGGGTATG          TTTTTTGTGTTTCAG 100 62
 CLH39_12145 NONE
 CLH39_12140 NONE
 CLH39_12135 2633795 .. 2633820 -  -7.5  -3.66288   TACGGCGGAATACAA         CGGCGCCAACA AGGA CATTCGCGCCG          ACCGTATCGCCCCGC  67 227
 CLH39_12075 2617806 .. 2617830 - -11.5   -5.4505   CTGGGCAACAAAAAA          GCCCCAAAG CATTGAT CTTTGGGGC          TTTTCTTGGCACAGC 100 63
 CLH39_12050 2612690 .. 2612704 -  -2.8  -4.44608   CTGACTGAAAAACAA               GACG TGACAGC CGTC               AACGATGATGAAATC  66 165
 CLH39_12040 2611024 .. 2611068 - -12.1  -2.65448   AGCAACAGCGACAAG CGCCACCGCCCTCATCCGGCA ACC TGGCGGATATGGACGATGACA TACCATTCGCTCCAC  69 163
 CLH39_11995 NONE
 CLH39_11990 2604648 .. 2604663 -  -7.5  -4.01888   AGCCTATACGACAAA              GCCCC TCACAC GGGGC               TTTTTTGTTGGGCGT  71 84
 CLH39_11975 NONE
 CLH39_11965 NONE
 CLH39_11960 2600740 .. 2600759 -  -3.4  -2.75064   GCTGGGAGCTAATTA            GTGGCGCA TTCA TGCCCCGC             TCCCCAGCGAAGTCG  41 15
 CLH39_11955 NONE
 CLH39_11950 2600008 .. 2600027 -    -5  -3.07816   CGTGTATGCACGGAA            CCACG-GCA TGT TGCTCATGG            GATTTCCTTATCTCG  51 20
 CLH39_11945 2599142 .. 2599155 -  -2.3  -3.14229   ACAGGCGCATGAATA               GTCGG TCGA CCCAC                GCCATTGGCATTGGC  42 47
 CLH39_11940 NONE
 CLH39_11935 NONE
 CLH39_11930 NONE
 CLH39_11925 2597344 .. 2597370 - -10.9  -4.32046   CGGCCAAAAAGTAAA        GCCCGCTCAATC TTTC GACTG-GCGGGC         CTGTTTCAAATCCTA  89 31
 CLH39_11910 NONE
 CLH39_11905 NONE
 CLH39_11900 2592677 .. 2592689 -  -5.5  -3.70571   TAGAAAGATTTCAAA                GCCAC GTC ATGGC                CTCCTTAGTTGGTAG  59 30
 CLH39_11895 2591836 .. 2591856 -  -2.5  -3.05498   CATTTGAGAGAGAGA            CATCTGTAG CTC CTATAGCTG            TAAAGATGGATGCCG  42 104
 CLH39_11890 2590834 .. 2590851 - -10.5  -3.02639   ATCTCCAAATAAGTA             GAGCGGC CTAA GCCGCCC              TCTTCAAACCGATTA  70 38
 CLH39_11885 NONE
 CLH39_11880 2589617 .. 2589639 -  -4.9  -3.68222   TTTCAACCGCAATAA          TGTGAACCGG TACA CCG-TCCACA           GACAGCACGTCGCCC  56 328
 CLH39_11875 NONE
 CLH39_11870 NONE
 CLH39_11865 NONE
 CLH39_11860 2587247 .. 2587278 -  -3.8  -5.26918   ATAGGCGACAAAAAA     GCTCTCTC-G-GGC AAACCA GCCGCTGAGAAAGC      TTGATGAATTGTTAA  82 158
 CLH39_11855 NONE
 CLH39_11850 2585394 .. 2585410 -  -6.5  -5.45652   ATGGGCAATAAAAAA              GCCCTCA AAA CGAAGGC              TCAACGAAAGTTTCA 100 38
 CLH39_11845 NONE
 CLH39_11840 2583779 .. 2583803 -  -6.4  -3.58726   TGGTGCGAGAGATAA          GCGTCATCCA TAGCG CGGATGATGC          CCGCGAACACCGATA  59 278
 CLH39_11835 2582869 .. 2582888 - -12.2  -5.25803   AACCTGGATAAAAAA            TAGCCGCT GAAA AGCGGCTA             TTTTACCAGTGAGTC 100 312
 CLH39_11830 2581719 .. 2581732 -  -8.1  -5.48303   ACAAGCGCAAAAAAA               GCACC CTAA GGTGC                TTCGATTAATGGACC 100 45
 CLH39_11825 NONE
 CLH39_11820 NONE
 CLH39_11815 NONE
 CLH39_11810 2576779 .. 2576794 -  -7.5  -5.47218   TTGGACGCAAAAAAA              CCGGC TAAAGT GCCGG               TCCATTCGTGCGTCT 100 64
 CLH39_11805 2574102 .. 2574115 -  -9.5  -5.61596   ACGCCCATAAAAAAA               CCCGC CGAA GCGGG                TTGATTGATGCTGGT 100 48
 CLH39_11800 NONE
 CLH39_11795 2571119 .. 2571130 -  -7.2  -5.50499   GCAGACGTAAAAAAA                CCGC TCAT GCGG                 CTCAGTAATACACAA 100 53
 CLH39_11790 NONE
 CLH39_11785 NONE
 CLH39_11780 2569592 .. 2569602 -  -6.8  -3.72592   AATTCCTATTAATAA                 CTGG AAA CCAG                 ATTTTTCCGTAAAAT  63 330
 CLH39_11770 2567537 .. 2567577 - -21.5  -4.39426   TATAGCCGTAGAAAA  CAAGAAAAGCCCCAAAG CGTTGAT CTTTGGGGCTTTTCTTG  GCACAGCTTGGAGCT 100 389
 CLH39_11755 2565812 .. 2565833 -  -7.3  -5.71712   GTCGACATAAAAAAA           GACCTCG GATCTTGA CGAGGTC            TTTAGGCTCCCTTTT 100 107
 CLH39_11745 2564523 .. 2564535 -  -5.5  -4.64676   TCAGGTGCAACAAAA                CCTGG GCC CCAGA                AACAACATTGCCCGC  73 90
 CLH39_11740 NONE
 CLH39_11735 2563194 .. 2563222 -    -6  -5.61596   ATTCCGATAAAAAAA       TGGCACGTCCGAT ACAT ACCGT-CGTGCCA        TTCGACCACAGCCAC 100 143
 CLH39_11730 2562316 .. 2562342 - -13.1   -4.5394   ACACAAACAGGAAAA        GGCCAGCC-TGA ACAC TCAAGGCTGGCC         TGCCAGCAAGTGATG 100 43
 CLH39_11725 NONE
 CLH39_11720 NONE
        artP 2559988 .. 2560013 - -10.4  -4.83615   CATCGCCCATAAAAA         GCCCGCCCAT GTTTCA ACAGGCGGGC          TTTTTTTATTACATA 100 106
 CLH39_11690 NONE
 CLH39_11685 NONE
 CLH39_11680 NONE
 CLH39_11675 NONE
 CLH39_11670 NONE
 CLH39_11665 2551501 .. 2551537 -  -9.6   -3.9644   CGTCTAATACAACAA   GGCCCTGC-A-AAGCGTC GTT AACGCTTCTTGCAAGGCC   AGATAGATGCGGCGT  78 106
 CLH39_11655 NONE
        benB 2548156 .. 2548166 -  -5.4  -3.59979   GCCCCCGACTTTAAA                 TGTG ATA CACA                 TCAATCACTTGACGG  56 10
 CLH39_11645 2547090 .. 2547120 -  -6.7  -3.08464   GTAGGAGTCATCCAA       CACAGGGCGCCCC GCGAA GGGGCGCTGTCTG       AATACATTTATTGGC  56 33
        benD NONE
 CLH39_11635 2544797 .. 2544825 - -16.1  -3.58905   AGGCTCCATAGATAA        TGCCAGCCATTCA ATT TGAAAGGCTGGCA        TTCGTCGATTGAAAA 100 87
 CLH39_11630 2544094 .. 2544112 - -10.3  -4.96106   TAGAAACATCAAAAA             GGCTCTC GCAAG GAGAGCC             TTTTATTTTCCGACT 100 65
 CLH39_11625 2543353 .. 2543363 -  -4.6  -3.02856   GAGGAAAATAGCATA                 GCCC TAG GAGC                 TTGTTTACGTAGAGC  48 146
 CLH39_11620 2542201 .. 2542211 -  -3.2  -3.46602   CCTGGTACATCACAA                 GCTG GAT CAAC                 GCCGTTTGCGCATCG  47 87
 CLH39_11595 2537028 .. 2537042 -    -7  -3.65314   GTCAAGCCTTAATAA               CGCGGC GCA GGCGCG               TATTGCCAATTGCCT  64 4
 CLH39_11590 2536116 .. 2536131 -  -3.2  -3.57119   GACAGATCTGCTAAA              GCGG ATGTTTGA CCGC               CCCATAGCCTATCCA  49 163
 CLH39_11585 NONE
 CLH39_11580 NONE
 CLH39_11575 2533658 .. 2533672 -   -10  -3.22209   ACATCAAAGCGAACA               GGGTTG AAA CAACCC               GACGCCCGGATCCCA  70 223
 CLH39_11570 NONE
 CLH39_11565 2532955 .. 2532971 -  -9.4   -4.6821   AACGCTAATATAAAA              GCCAGC AAATA GCTGGC              TTTTATGATCTGGCA  90 41
 CLH39_11555 2531267 .. 2531278 -  -2.2  -4.63527   TGAGCATTGTAAAAA                TGGC GTAA ACCA                 CAGGAACAGCCAAGG  65 204
 CLH39_11545 2530197 .. 2530217 - -13.3  -5.63517   TCCTGAAATAAAAAA            CGCGGCCTT GAA AAAGCCGCG            CTTTTGAATTGAACG 100 215
 CLH39_11540 NONE
 CLH39_11535 2527572 .. 2527598 -   -21  -4.99638   ACACCTAGAGAAAAA         CGCCTTTGCAGC CGG GCTGCAAAGGCG         ATTGTGCCCGACCCG 100 109
 CLH39_11530 2526594 .. 2526604 -  -2.4   -2.7566   AGGCAAGGCGAATCA                 CGCG CGT CCCG                 TCGCTTTTTCGACGG  39 12
 CLH39_11525 NONE
 CLH39_11520 NONE
        ptsP 2524108 .. 2524121 -  -5.3  -2.70932   GCCTGTTTTCAATTA               CTTAG GCGG CTAAG                GTGGCCAGATCGATG  47 13
 CLH39_11510 2523243 .. 2523263 - -18.3  -5.01497   AGCAGTATAGAAAAA            GCGGGTGCC AAA GGCACCCGC            TTTTTGCATCTGGCC 100 67
 CLH39_11505 2522907 .. 2522928 -  -2.1  -3.54408   CCGTATTCAAATGAA           GTGATCAGC CTTG GCTGCCCTC            TTGAGCAGAGGTGTC  47 8
 CLH39_11500 2521598 .. 2521625 -  -5.5  -5.00616   TTCCCTTCCAAAAAA        CTGAGCCAGCT TTATTG AGCTGGCTCTT         TCATGATCTGTTTCA  79 69
 CLH39_11495 NONE
 CLH39_11490 2519091 .. 2519122 -  -5.8  -4.46656   CCGATAACACCAAAA      TACTCGCCCCC-CCT ATC AGGCGAAGGCGCGCA      ATTTCATACGTAGGC  73 171
 CLH39_11485 NONE
 CLH39_11480 2518099 .. 2518125 - -15.2  -4.58395   GTTACTTTCCAAAAA         CAAACGGAGCCC CAA AGGCCCCGTTTG         TGAACTATACAGTCA 100 49
 CLH39_11475 2517021 .. 2517039 - -12.4  -2.54523   GTATACCGGAACCGA             CCGGGCCT AAA AGGCCCAG             CGGCGCGAAGTAGGA  73 42
 CLH39_11470 NONE
 CLH39_11465 2514218 .. 2514236 -  -3.9  -4.19817   TTCAGTCAGGCAAAA            CT-GTACG CAAA CGTACCAG             GCTTCAGTCCTGGTC  61 29
 CLH39_11460 2513713 .. 2513732 -  -8.5  -5.14563   CCTTCCATGAAAAAA            GGCCGGC ACCAAG GCCGACC             TTCGTTCCTGCTTAG  93 51
 CLH39_11455 2512657 .. 2512667 -  -4.6  -2.74597   TGGACACACACACCA                 CGCG GCA CGCA                 AGTTCGTTCATTGGG  44 235
 CLH39_11445 2510884 .. 2510894 -  -6.8  -4.39386   GGGAAATTATCAAAA                 CTGC CAG GCAG                 CACATAACGAATAAG  74 9
 CLH39_11440 2508897 .. 2508911 -  -5.7  -2.93382   TCGTAGAGCCATATA               GTACC GCTTT GGTAC               TATATGGTCAAATTA  52 38
 CLH39_11435 NONE
 CLH39_11430 NONE
        sufC NONE
        sufD NONE
 CLH39_11415 NONE
 CLH39_11410 NONE
        sufT 2502527 .. 2502545 - -10.3  -5.28176   TTCAGGCACAAAAAA             GCCTGCA TGTTC TGCAGGC             TTTTTCTATTACAGC 100 34
 CLH39_11395 2499998 .. 2500034 - -10.9  -2.67981   AGGGCAGCAAATGGA    CGAAGCCAGTTTGAACA ATC TGATTGAACTGGCTTCG    TTTCGATAAAAGCCA  68 206
 CLH39_11385 2497410 .. 2497440 - -13.5   -3.9122   CAGTTTCGGAAACAA      CAGGA-GCCGTATT TGCA AATACGGCATCCTG       GGCGGAGATTTCTAC  90 381
 CLH39_11375 NONE
 CLH39_11370 2488349 .. 2488370 -  -4.3  -4.17089   CTGAAATGGTGAAAA           TGCCAGCCG CACT CTGCTGCCA            AGCTAAGGGCTGAAG  63 70
 CLH39_11365 2486568 .. 2486588 -    -4  -4.20769   ACAGGGCAATAGAAA            TGATCAGG CGTTT CATGATCA            GACTGCGTCTCCCGA  61 23
 CLH39_11360 2485699 .. 2485713 -  -2.1  -2.71364   TCAGTGCCGCAATCA              CG-GAG TGAC CTCTCG               TGCACACTCCTCTGC  39 8
 CLH39_11355 NONE
 CLH39_11350 2480766 .. 2480787 -  -4.3  -3.17075   TTGCGGTTAATGCAA           TCTCCCGTC CTAT GACGGGCCA            AAAGAGTGGCTAAAC  48 46
 CLH39_11345 NONE
 CLH39_11340 2477389 .. 2477428 - -22.6  -3.02166   CTGGCAATGAAAGCA  TAAAGCCCATGATGAAAT TTAA ATTTCATCATGGGCTTTA   GTAAGACAAATTTCA 100 375
 CLH39_11330 NONE
 CLH39_11325 2475033 .. 2475072 -  -2.9     -3.94   TTAATGGCTAAACAA GTGCTGGCT--GG-GCTGTT CAT ACCGGCTCCTGAGCCAGCAC TTCTTTGGCGCTCAT  54 2
 CLH39_11320 NONE
 CLH39_11315 NONE
 CLH39_11310 2471201 .. 2471216 -  -3.3  -3.62597   GCGAGGGCTCAATAA              TCGAT ACGGGG ATCGA               CCAGCATGTAGGAGA  49 3
 CLH39_11305 NONE
 CLH39_11300 2468538 .. 2468550 - -10.5  -2.60373   ATCAACAATTAAGAT                CCGCC CTG GGCGG                GATTCGGAACGCCCG  68 134
 CLH39_11295 NONE
 CLH39_11290 NONE
 CLH39_11285 2464843 .. 2464867 -  -2.1  -3.65214   ACTTAGGTAAAAAAT          GCAAAGCTATT GTG AACAGGCCTGC          CCTTCTGATTGCATG  47 7
 CLH39_11280 2464475 .. 2464496 -  -7.3   -5.2696   CGAAAACGGAAAAAA           GCCATGGTA TCGC TACCACAGC            TTTTTGCCTTACAAG 100 88
 CLH39_11275 2463221 .. 2463238 -  -5.5   -3.6422   CATCGCCCCAAAACA             GCGGC TGGCCATG GCCGC              ATAGCCTTCCTACTT  56 493
 CLH39_11260 2456450 .. 2456477 -  -3.4  -3.10409   CATGAATCCAGTCAA        CCACGAGATAAA CATT TTTATCGCTCGG         GTGCTACCCCACAGG  44 61
 CLH39_11255 NONE
 CLH39_11250 2455567 .. 2455578 -  -4.4   -3.2613   AATAATCACTATTAA                TACG GAGG CGTA                 GGCTCAGTTTTGACT  50 156
 CLH39_11205 2443633 .. 2443652 -  -5.7   -3.9122   CAGCTTCTCAAAGAA            CGCGCCCA ATACA TGGGC-CG            CATGCGTGATTTCAA  61 162
 CLH39_11085 2424498 .. 2424514 -  -8.7  -3.61517   ACGCCTGGTGAAGAA              CTCCAGC GAG GCTGAAG              CCAAACTGCCAGCCG  66 225
 CLH39_11065 2419173 .. 2419192 -  -2.1  -3.66178   GCCTGTAAGCGGAAA            CTGACAG AACAGG CTCTCAG             GCAAGGCTGCGCCTG  50 68
 CLH39_11055 2417471 .. 2417499 -    -6  -3.52177   TGGTAAAAAACCCAA       GGATGCACGGTAT TAAC AT-CCGCGCTTCC        TGATTGGATTAAAGC  59 9
 CLH39_11040 NONE
 CLH39_11035 NONE
 CLH39_11030 2411544 .. 2411556 -  -3.3  -4.59846   AGCAGACAAAAACAA                GACGG GCG CCTTC                CCACCCAATCCGCTG  69 394
 CLH39_11000 2406480 .. 2406496 -  -9.4  -5.16237   AAGCCCATTAAAAAA              GCCCGT ATCAA ACGGGC              TTTTTTATTTCCACC 100 60
 CLH39_10970 2399103 .. 2399118 - -11.8  -3.27771   CTCATAACAGCAACA              GGGCCC CTGA GGGCCC               GCTTAGCCACCTTAC  75 465
 CLH39_10935 2393399 .. 2393409 -  -2.6  -2.65841   AAGTACAAGAGCAAT                 TAAA TCG TTTA                 TTGGGAAACCGCCTT  39 49
 CLH39_10930 NONE
 CLH39_10925 2391587 .. 2391613 - -15.2  -5.45802   GGCTCAAAACAAAAA         CCCCGGTTTGTA TGT TGCAAACCGGGG         TTTTGTTTTAAAGGC 100 41
 CLH39_10915 NONE
 CLH39_10910 2387530 .. 2387559 -  -5.6  -4.66609   CACCCTAGGGAAAAA       GCGGACAAATCC GTCTAT GGAAATGCCCGC        TTTTTTCTTGCCCTG  73 44
 CLH39_10905 2386442 .. 2386475 - -11.7  -4.89477   CGGGCAACAATAAAA     CACGTCGCTGCCTTG ATCA CAAGGCAGCGATGCT      TCATCTTCTTTCATC 100 226
 CLH39_10900 2385636 .. 2385663 -    -7  -5.60993   CCCCGCATAAAAAAA        GAGCCACCAGTC TTAA AACTGACAGCTC         TTTTTACTTCATTTA 100 49
        aspA NONE
 CLH39_10885 NONE
 CLH39_10880 NONE
 CLH39_10875 2378361 .. 2378385 -  -7.2  -3.89346   AAAAATAGGACGAAA          GCTCTGATCA TAGTT CAATCAGAGC          AACGGCTGCGTCTCC  69 91
 CLH39_10870 2377315 .. 2377336 -  -2.3  -4.17023   TTAAGCAGCGCAAAA           GCACACTTCA CTG TGAA-TGAGC           GTGAGCAGAGCTAGA  57 97
        cobZ NONE
        tcuB NONE
 CLH39_10855 2373048 .. 2373068 -  -7.6  -3.12351   TTTGGGCATACCGAA           CTGGGTGCG CGTT CGCACC-AG            ATTGATGGTGAGGCC  57 441
 CLH39_10820 2362178 .. 2362200 -  -6.2  -3.93868   CTCCGAAAATAAATA           GGCAGGGC TCTAGAG GCCCTGTC           ACTACCGAACTCAAG  64 36
 CLH39_10815 2360550 .. 2360578 - -11.8  -5.47218   GCTTAGCTAAAAAAA       CCGCCTTG-CTCC CTAA AGAGACAAGGCGG        CCAAAGGTACGATCT 100 70
 CLH39_10810 2359910 .. 2359929 - -12.1  -5.88565   TGGAGAACAAAAAAA            CCGCGCC GTAAAT GGCGCGG             TTTTCAATTTAACAA 100 47
 CLH39_10795 NONE
 CLH39_10790 NONE
 CLH39_10785 NONE
 CLH39_10780 NONE
 CLH39_10775 2351957 .. 2352000 -    -6  -3.12351   CCTTGGGAGAGTCAA TCCTGCGCTTGTCGCTCC-AT GAA ATCGGAGCGACAAGCGGACCG TCAGTATACTAGCAG  53 34
 CLH39_10770 2351453 .. 2351467 -  -3.4  -2.52543   ATTCGGGCCAATTTA               CCGGGC CAG GCCAAG               ACTTAAAGCGCGACT  40 40
 CLH39_10755 NONE
 CLH39_10750 NONE
 CLH39_10745 2344414 .. 2344431 -  -5.5  -4.72272   CCTGTTCAGTAAAAA             TGGCAAG GCGC CGTGCCA              GGCAGTGTGTGCTGC  73 122
        rdgB NONE
 CLH39_10735 2342498 .. 2342513 -  -7.6  -3.27994   TTAATTGTAGAGCAA              TTGTGC AGAT GCACAA               TAAAAAATGTCTTAA  61 56
        glnA 2340847 .. 2340866 - -11.4  -5.19328   AGGGCAGAATAAAAA            GAGCGGCC CGAA AGCCGCTC             TTTTTGATCGTACTG 100 63
 CLH39_10725 2340096 .. 2340109 -  -3.7  -4.56367   GATGTGAGAAAGAAA               TCGCC CAAG GGCGT                CTGATTGCCGTTCCC  70 238
 CLH39_10715 NONE
 CLH39_10710 2337538 .. 2337558 -  -3.9  -4.20918   GGCAATGGCAATAAA            CCATTCCAG CGC CTGGAGCAG            GACAATCTGTCCGAA  61 169
 CLH39_10685 2332325 .. 2332352 -  -2.1  -4.33417   CTTAGTCATAAGAAA        CCTCTGATGAGT GTTGT ACT-ATCAGAGT        TTAAGCGCCTATAGC  60 65
 CLH39_10680 2331939 .. 2331954 -  -3.2  -3.86524   ATACGTCTTTAGAAA              TTGAGG ATAG CCTCGA               CCTCGAACTGAGCGC  54 3
 CLH39_10675 NONE
 CLH39_10670 2328818 .. 2328832 -  -2.8  -3.52995   TGAAGCAGAATAACA               CGCA GTAGGTG TGCG               ATTTACGCTAGTTCA  49 28
 CLH39_10665 2327921 .. 2327938 - -12.7  -3.92592   AGGGGGAATAGGAAA             GGCCACC GTTT GGTGGCC              TTTTTTTATCGCTAT  87 62
 CLH39_10660 2326653 .. 2326668 - -11.8  -5.62045   ATACATAATAAAAAA              CCGGCC CGAA GGCCGG               TTTTTTTACGAGCAA 100 51
 CLH39_10630 2319746 .. 2319775 - -16.5  -3.69605   GGCATCCAAAAGCAA       TGCCCCCGTTCTT CGTA AAGAGCGGGGGCA        CATAATCCAGTCTTA 100 38
 CLH39_10625 NONE
        livM NONE
        livG NONE
        livF 2315960 .. 2315988 - -12.6  -5.80364   ACCCGAATAAAAAAA       CCTGAATC-CAGC AAAA GCTGCGATTCAGG        TTTTTTTTCAAGCAC 100 105
 CLH39_10595 NONE
 CLH39_10590 NONE
        gapA NONE
        fumC 2308745 .. 2308803 -  -2.4  -3.95073   TTTCATAGGGACAAA TGGCTACGCTGTTTACGTATTCGCCCC ATTGAA GGGGCGAATACGCTCA-AGCACAAGCG AGGCTGAATTTAGCC  53 35
 CLH39_10575 NONE
 CLH39_10560 2305476 .. 2305495 -   -10  -5.11063   AGCAGCCAATAAAAA            CGGCCATC CCTG GATGACCG             TTTCCCATTGTGTAA 100 50
 CLH39_10515 2296540 .. 2296555 - -10.4  -5.94713   AGCTGATAAAAAAAA              CGCCTC CGAA GAGGCG               TTTCAAGGGGGAACT 100 68
 CLH39_10510 2293896 .. 2293916 -   -14  -5.00616   CGCTTTGCTAAAAAA            TGCCGCCC CAGTT GGGCGGCA            TTTTTTTCTCTGCTT 100 105
 CLH39_10480 2287655 .. 2287687 -  -3.5  -5.75342   TGCTGGCAAAAAAAA     CAAGCAGGCCGACT AATAAA AGCCAGCCTA-TTG      TTTTGCGAGATGAAA  93 192
 CLH39_10475 NONE
 CLH39_10470 NONE
 CLH39_10465 2283664 .. 2283696 -  -6.1  -5.38249   AGCAAGGACAAAAAA      GCCGCCCGTATTCAG GTT CTGCGTACGGTCGTC      GAGACGCTGGAGTCT  95 181
 CLH39_10450 2278742 .. 2278753 -  -5.8  -3.63895   GTGAAGCACCGCAAA                TGGC CTCG GCCA                 GCATAGCGGGCTGTG  59 78
 CLH39_10445 NONE
 CLH39_10440 NONE
 CLH39_10435 NONE
 CLH39_10430 NONE
 CLH39_10425 NONE
        traD 2272369 .. 2272404 -  -2.5  -3.01712   GTGGTGGGCTTAACA   GGGCGGC-TGGTCGAGT TGGT ACTCATCCGTGCC-CCC    TTGTGATCAGGCCCA  41 12
 CLH39_10415 NONE
 CLH39_10410 NONE
 CLH39_10405 2270960 .. 2270990 - -11.2  -2.77344   TGATGTGTTAAGAAG       TCCTGTGAGCGTCA AAC CAACACCCACAGGA       TTAAGGACAACAGCA  71 6
 CLH39_10400 NONE
 CLH39_10395 NONE
 CLH39_10390 NONE
 CLH39_10385 NONE
 CLH39_10380 NONE
 CLH39_10375 NONE
 CLH39_10370 NONE
 CLH39_10365 NONE
 CLH39_10360 NONE
 CLH39_10355 2259743 .. 2259758 -  -2.6  -2.87132   TTTTTTGGTGAGAGA              GACT-TG TGT CATAGTC              CAGGCACCCGTCCAC  41 18
 CLH39_10350 NONE
 CLH39_10345 2257651 .. 2257663 -  -2.7  -4.08767   CGCACGTCCTGAAAA                CTCTA GGC TAGAA                CTACGAACGTCTGAC  56 72
 CLH39_10340 2256810 .. 2256835 -    -4  -3.74158   TGAAGCAGACGGAAA         CCTTTCGAGAC GTGTT GTC-CGAACGG         GTATCGCACCTGGAT  54 93
 CLH39_10305 2253698 .. 2253729 -    -8  -2.79098   TTGAGCTAGTAACTA      GCCCTCCGGTTTCA GTAA TGAAATCAGAGGGT       AAATATCATACTGAA  59 31
 CLH39_10300 2252742 .. 2252763 -  -7.3  -3.53012   GTGTGTCTGTTCAAA           CCCTTGG GCACATAA CCAAGGG            TTTCGACTTGACAAG  64 55
 CLH39_10295 2252224 .. 2252235 -  -7.2  -3.95584   TTGTCAGTAATCAAA                GGCG CGAA CGCC                 TCGGGCGACACGGCA  69 2
 CLH39_10290 NONE
 CLH39_10285 NONE
 CLH39_10280 NONE
 CLH39_10275 2249278 .. 2249321 - -15.2  -3.30635   CAAACCCTTGCACAA GCAGCACCAGCGCAACGGCT ATAT AGCCGATGCGCTGGAGGTTC GTGCGGAGTTTTCGT  90 200
 CLH39_10270 NONE
 CLH39_10265 NONE
 CLH39_10260 NONE
 CLH39_10255 NONE
        mbnB NONE
        mbnC NONE
 CLH39_10240 NONE
 CLH39_10235 2239919 .. 2239929 -  -6.8  -3.33492   TTATTCATTCGATAA                 GCTC CTT GAGC                 AGAAACAGGGTTAAA  58 52
 CLH39_10230 2239354 .. 2239385 - -13.9  -3.71873   CTATCTATATGCAAA      GGCAACCCAT-CAC AAAGA GTGTATGGGTTGCC      GGTTAAATTCTTAAT  90 36
 CLH39_10225 NONE
 CLH39_10220 2234335 .. 2234349 -    -2  -3.27408   GCTTAGGCAAACACA               CCGGCA GGT TGCCTA               AGCAAAACCTGTTTG  44 314
 CLH39_10155 NONE
 CLH39_10150 2223705 .. 2223725 -  -5.3  -4.20516   CGGCGATTCAAGAAA            GCCACTGGC ATG ACCACCGGC            GAATACGTACAGCGG  66 484
 CLH39_10140 2222247 .. 2222271 -  -2.9  -3.48807   GGAGGAAATGGACAA          TTTTCATGG GTACTCT CCGTGAAAA          GATGTAGTTGTAATC  47 43
 CLH39_10135 2221173 .. 2221191 -  -9.6  -3.33171   TGTAAGAATGATCAA             GCTCGATA ATG TACCGAGC             ACCCTGCCCGCAATA  70 173
 CLH39_10105 2215415 .. 2215428 -  -5.2  -4.21811   TAGCTAAGATACAAA               CCGC TGATAG GCGG                TATTGTCCAAATATC  66 86
 CLH39_10100 NONE
 CLH39_10095 2213681 .. 2213704 -    -9   -3.4252   TCTGATTCATGACAA          CTAGTTTCCA GTAT TGAAAACTAG           TTGTCAATACTCGTC  69 214
 CLH39_10090 NONE
 CLH39_10085 2212558 .. 2212572 -  -6.4  -4.11751   ATTAACTGTGGAAAA               CCAGAC GTA ATCTGG               CGATACCTGTCAGAT  66 173
 CLH39_10065 2209508 .. 2209518 -  -2.4  -3.54459   GCAACGCCGGTTAAA                 CGTG TCC CCCG                 ACCCAGACCGTGGGA  47 290
 CLH39_10005 NONE
 CLH39_10000 2196975 .. 2197005 - -10.5  -4.30014   CGCATTAATGGAAAA       GCTCCCCAGACAT GATTG ATGCCTGAAGAGC       CTTTCATGGGGGAGA  89 74
 CLH39_09985 2194207 .. 2194231 -  -6.3  -3.35849   GGTAGGAAAGGAAGA          GGCACCGCGCT ACG AGCTGGATGCC          AATGCAGACATCTAT  56 488
 CLH39_09975 NONE
 CLH39_09970 NONE
 CLH39_09965 2191903 .. 2191923 -   -14  -4.96848   GTGGTGACAGAAAAA            GGGACGCG TCTGG CGCGTCCC            CTGGAAGTGGTTCAG 100 84
 CLH39_09955 NONE
 CLH39_09950 2189933 .. 2189957 - -15.8  -3.14344   TACTGTTTTTATTAA          CAGGCAGCCT GATAT AGGCTGCCTG          TCTATTTACGGTGAC  93 49
 CLH39_09945 2188833 .. 2188849 -  -9.4  -4.68593   GGCAGGATGTAAAAA              GGAGCC TTGAG GGCTCC              TTTTTTGTTACGGCA  90 150
 CLH39_09925 2184695 .. 2184724 -   -18  -3.71649   TTCTGAAACGCTAAA       CCATTCAGGCCC TATCAG GGGCCTGAATGG        TTTTTGGGGGCGGTT 100 83
 CLH39_09915 NONE
 CLH39_09885 2177892 .. 2177907 - -10.4  -4.65078   AGATTTGGAACAAAA              CGGGCT TTTT AGCCCG               TTTTATTCATTCGTC 100 28
 CLH39_09875 2175158 .. 2175198 - -21.3  -4.21275   TCAAGCCAGTCAAAA  CTCAACACCCCGACATGGA AGC TCCATGTCGGGGTGTTGTC  GTTTTCGGGCGCATC 100 411
 CLH39_09865 2171642 .. 2171674 -  -9.7  -5.33405   CGCAGCAAACAAAAA      GGCCTGCGCCAGGTA TCA CACCGGGTTCAGGCC      TTGATGTTGAGGCTG 100 75
         map NONE
 CLH39_09770 NONE
 CLH39_09765 NONE
 CLH39_09760 2149101 .. 2149120 - -10.7   -5.4505   GGGTGGAACAAAAAA            GCCCTGC TGGAAG GCAGGGC             TTTATGGCTGTAGTG 100 54
 CLH39_09715 NONE
 CLH39_09710 NONE
 CLH39_09705 NONE
 CLH39_09700 NONE
 CLH39_09695 NONE
 CLH39_09690 2130270 .. 2130290 -  -4.8  -3.58305   AAGGAAGCGGCCAAA           CAGGCATCA CCCG TGAT-CCTG            GAGCCCATGATGGCG  53 347
 CLH39_09680 2127529 .. 2127539 -  -8.2  -2.71681   GAACTTCGGCAATCA                 GGGC CGT GCCC                 GCGTGATGCTGGTCA  54 395
 CLH39_09670 2125346 .. 2125373 -  -2.6  -4.07568   TTTCGTTTTGGAAAA        CATCAGCAACCC GCTT GTGTTCCTGCTG         TTCGTCAATGTGCTG  56 497
 CLH39_09550 2100473 .. 2100490 -  -9.9  -5.55769   CCTGAGAATAAAAAA             CGCAAAC CGGA GTTTGCG              TTTTGATGCCTGGCC 100 46
 CLH39_09545 2099617 .. 2099638 - -12.3  -4.62471   CTGAAGGGTTAAAAA           GCGCAAGCC TTGC AGCTTGCGC            TTTTTTTATGCCTGC 100 51
 CLH39_09540 2098032 .. 2098044 -  -4.7  -3.01712   CGGTTTTGTGGAAGA                GGTGG ATG CCTCC                GGTCAGAAGCGTTAC  46 255
 CLH39_09530 2095499 .. 2095513 -  -7.1  -5.83226   AAGGGAATAAAAAAA               TCGCC GTAAT GGCGA               CTTTTTCTGTGTGCT 100 88
         xth NONE
 CLH39_09520 NONE
 CLH39_09515 2093206 .. 2093223 -  -8.4  -2.73622   ATAAGAAGGAGATCA             GCCCTG ATTCAG CAGGGC              ATCTGCGCCTAATTG  59 5
 CLH39_09510 NONE
 CLH39_09505 2090607 .. 2090626 - -13.6  -5.37345   TTGAACCATAAAAAA            CGCCTGCT ATTG AGCAGGCG             TTTTTTGTACGGCTG 100 62
 CLH39_09490 2087669 .. 2087680 -    -3  -3.43084   ATGATTAAAAGAAAG                GATT AGGC AATC                 GTGGTGTTCAGGGTG  47 16
 CLH39_09485 NONE
 CLH39_09480 2085919 .. 2085932 -  -4.5  -3.25072   TGGACGACAAGGCAA               GGC-GG ACC CCAGCC               GCGTTTCGATCTGGC  49 374
 CLH39_09455 2081263 .. 2081276 -  -3.1  -3.18274   GTGACGGTAACTGAA               CAAGA GAAA TCCTG                GTGTTGCGGTTTAAT  44 40
 CLH39_09450 2080403 .. 2080420 -  -8.3  -3.84451   TGGCCTAAAGGCAAA             GGGGCGG TTTA CAGCCCC              GAGTGACGAAGTTGA  72 16
 CLH39_09440 2079055 .. 2079067 -  -5.5  -2.79803   GAATTTGAGCTAAAC                CAGTG TAG CACCG                CGTGCCCAGAAGGCT  48 7
 CLH39_09435 2077713 .. 2077752 - -27.4  -3.39529   TGAACGCAAGAGGAA  CGGCCCCCAAGCC-TGGAT GAA ATCCAAGGCTTGGGGGCCG  TTTTTCATGAGCCGT 100 63
        argH 2073522 .. 2073544 - -15.6  -5.77853   AATGCCTAAAAAAAA           GCCGCTCCTA GAA CAGGAGCGGC           TTTTTCTGCTTTCAG 100 54
 CLH39_09410 2071752 .. 2071778 -  -4.4   -3.0634   AATTTCATTGGAATA         CTCCTGTTGTTA GTT CAACGAAAGGAG         TACTTTCAGGCCTGA  48 54
 CLH39_09405 NONE
 CLH39_09400 2070017 .. 2070042 -  -7.6  -5.24129   GGCGCCCACAAAAAA         GCACCAAGGA CATGAC TCCCTAGTGC          TCTAAAAAGCCAGCG 100 227
 CLH39_09385 2065469 .. 2065506 - -10.6  -4.41047   AGGCTTGAACTAAAA   CGCCCTGCAAATTGGA CAGAGT TCCAGTTTGCGGGGCA    TTTTGTTTTTTCTTG  89 282
 CLH39_09360 2060251 .. 2060261 -  -2.4  -4.08216   TTAGTGGTTTGAAAA                 CTGC CGT GCTG                 ACGCGCTTGCGCAAG  56 431
 CLH39_09350 2058027 .. 2058048 - -11.6   -5.4505   CTCCGCAATAAAAAA           GCGGCTGA TGGTGT TCAGCCGC            TTCGTTAAACATGCA 100 101
        trxA 2057581 .. 2057601 - -13.3  -5.81412   TTCATGCAAAAAAAA            CGCCAGACA AAT CGTCTGGCG            TTTTTTCTGGGGCCG 100 47
 CLH39_09310 NONE
 CLH39_09305 2050922 .. 2050942 - -16.9  -5.41143   GAGTTGCCAAAAAAA            GGCCGGGAA ATA TTCCCGGCC            TTTTTTATTTACGGG 100 34
 CLH39_09285 NONE
 CLH39_09280 2046548 .. 2046571 -  -8.2   -3.2614   GACTTGGCAGAGCAA          CAGGGTTTGT CAGA AAAAACCCTG           AGCCGTCTGTTTCGT  64 199
 CLH39_09270 2044826 .. 2044854 -  -8.2  -3.60685   GCTCAAAAAAAATTA       TGGCCCGATATTC TTTA GAAG-TCGGGCCA        ATTTTTATAATCCAT  67 50
 CLH39_09205 2029922 .. 2029953 -  -3.6  -4.15044   TTGCTGGCCAATAAA      CCGACCGCTCCG TCTTGCCG CTGAACGGTCTG       ATTCCGCCTGACGCC  61 94
 CLH39_09195 2027973 .. 2028003 -  -2.5  -2.87988   CATGACAAGGAATCA       GAGTAGACAAGAA TGTGT TTCATGACTGCTC       CATAGCGTTTTTCCA  41 107
 CLH39_09190 2027269 .. 2027288 - -10.7  -3.89756   ATTTGAAACGAAGAA            CGCCCTC AATGTG GAGGGCG             TTTTTGTGCCATGGT  82 85
 CLH39_09165 NONE
 CLH39_09160 2021340 .. 2021363 - -18.2  -2.53903   TTGGCCAAAAACGAT          CCAGGCCTGC TTGC GCAGGCCTGG           GAAGAATTGCAACGC 100 70
 CLH39_09150 NONE
 CLH39_09145 2018263 .. 2018276 -  -5.9  -3.53012   TCTCTCTGGCTCAAA               CCCGC TACC GCGAG                GGAGTCGATACGGCG  55 178
 CLH39_08965 1975488 .. 1975506 -  -4.4  -3.62597   GTCATTCTGCAAGAA             CTGCGCCA GCA TGGCGTGG             ATGTGGAACAGACCG  53 396
 CLH39_08950 NONE
 CLH39_08945 NONE
 CLH39_08940 1969816 .. 1969832 -  -2.2  -3.55554   TAAACAGAAGAAAAG              GGGC GGGCATGAA GCCC              GAGGCAATGTTCGAT  47 146
 CLH39_08935 1968712 .. 1968722 -  -5.4  -3.57144   TTGGCGATTTTCAAA                 TTGC TGC GCAA                 AGATATGTCGCTGGC  55 192
 CLH39_08925 NONE
 CLH39_08920 NONE
 CLH39_08915 NONE
 CLH39_08910 1963260 .. 1963290 - -14.7  -2.50508   TGAATTAAAACAAGG       GGCGGTAACCCGG TCGGG CTGGGCTACCGCC       AGAGTACCAAGTATC  83 40
        mmsA 1961568 .. 1961592 - -11.4  -5.58074   CAAGCATTAAAAAAA          CCGGGGTTCT GAATT AGAGCCCCGG          TTTTTTTGTTCTTGA 100 138
 CLH39_08875 1949887 .. 1949915 - -11.7  -3.53012   TTCCTGCGGCCTAAA        CGGGATCAAGGGC TTA GCCCTTGATTTCG        CGTATCAAGCCTTCC  82 10
 CLH39_08860 NONE
 CLH39_08855 NONE
 CLH39_08850 NONE
 CLH39_08845 1941603 .. 1941617 -  -4.3  -3.74251   GACAGGCCCAGTAAA               CAATG TCTAT CATTG               GAAAATCTCCAGTAG  56 20
 CLH39_08840 NONE
 CLH39_08835 1940818 .. 1940846 - -13.2  -2.75349   AAGCCCCAAAAGCGA        CTGCGTATGGGG CAATT CCCGATACGCAG        TAAACACTTACTAGT  79 100
 CLH39_08830 1940278 .. 1940302 - -13.7  -4.59342   GCCAGTAGAAACAAA          GAATGGGCCTT TTC AAGACCCATTC          TTTTTATCTGGCTAC 100 69
 CLH39_08750 1925786 .. 1925799 -  -9.5  -5.53288   GGGAAGTTAAAAAAA               CCGCC CGAA GGCGG                TAGCGTACTTATTGG 100 386
 CLH39_08745 NONE
 CLH39_08740 1924328 .. 1924345 -    -7  -3.72695   ATTTTGCGCATCAAA             CTACGC GCGCAT GCGTAG              ACCATGGACGGCATT  64 332
 CLH39_08730 1923761 .. 1923775 -  -7.8  -3.59262   GCTCAGACGCCGAAA               TCGACG CCA CGCCGA               TCAGGGTGCTGCGCT  64 198
 CLH39_08555 1892625 .. 1892663 -  -6.1  -3.73224   TTACCTGTGAGTAAA   TGACCTATGGGTATTGA TAAAT TAATTACCCATAGGTAA   GATTTGTGCATGGAA  62 500
 CLH39_08545 NONE
 CLH39_08540 1890969 .. 1890980 -  -4.4  -4.15197   TAAACAGCAGATAAA                TCCT GCTT AGGA                 GCTTTCACTCCAAAG  63 86
 CLH39_08530 NONE
 CLH39_08525 1889216 .. 1889229 -  -5.9  -5.15167   CACCATCAAGAAAAA               GAGCG ATTA CGCCC                ACGACTCCCCGGAAC  86 161
 CLH39_08520 1888004 .. 1888018 -    -7  -3.40071   AAGCCATATTTAGAA               GCCCGC TGC GGGGGC               GATGAATTTAAGAGC  60 5
 CLH39_08515 1887249 .. 1887262 -  -3.8  -2.70932   TTTGCCTCGCAATCA               GGCT GACACA AGCC                GGCAATTCCAACAGG  43 399
 CLH39_08505 1885593 .. 1885619 -  -7.3  -3.08471   GATAAGTTGACCGAA         TTCGAGCGCAG TTTTG CCACGCTCAAA         GAGAACTAGTCTTAA  59 224
 CLH39_08495 1883632 .. 1883642 -  -2.4  -4.71426   TTTTGAGGAAGAAAA                 GCTC AGT GGGC                 AATTTACAGGCCTAC  66 413
 CLH39_08485 1881059 .. 1881091 -  -7.6  -5.09426   GCGAAGGGTAAAAAA      TTGCCCCGGCTGTA TGTGT TGCAGGCGGGGCAG      GGGTTTGTTGCTGTA  91 52
 CLH39_08480 NONE
 CLH39_08475 NONE
 CLH39_08470 NONE
 CLH39_08465 1878728 .. 1878744 - -10.8  -5.24129   TTCTTCCATAAAAAA              CCCGCC ACGGG GGCGGG              TAGATTCCAATCTTT 100 79
        cobA NONE
 CLH39_08435 NONE
 CLH39_08430 NONE
 CLH39_08425 NONE
 CLH39_08420 NONE
 CLH39_08415 NONE
        nirJ NONE
 CLH39_08385 1865562 .. 1865581 -  -3.4  -2.83164   CCATCTACTACGAGA            TGGGCGCT GAGC AGCGCGCT             CTGATGGGCATTGCC  41 138
 CLH39_08365 1860764 .. 1860787 - -13.2  -4.98531   GCTGGAAAGCAAAAA          GCCGACCATC TTGC GATGATCGGC           TTTTTTGGAATTTGG 100 38
 CLH39_08345 1855782 .. 1855792 -  -2.4   -2.5474   GGGTATCTACAATAT                 TGGC GGC GCCC                 CTGAAGGAGTGGCGC  38 288
 CLH39_08335 NONE
 CLH39_08330 NONE
 CLH39_08325 NONE
 CLH39_08320 1851844 .. 1851864 -  -9.6  -2.95448   ATCAATAGGGAGAGA            GGCCGGGC TTGTG GCCCGGCT            AAGAATTACTGGCCA  67 31
 CLH39_08315 NONE
 CLH39_08310 NONE
 CLH39_08305 1848445 .. 1848468 -   -11  -4.60924   CAAATTCCTCAAAAA          GCCGATCATC GCAA GATGGTCGGC           TTTTTGTTTTGTGTG 100 131
 CLH39_08295 1847571 .. 1847585 -    -7  -3.85698   CGCGGCCTGGATAAA               GGCGCG ATT CGGGCC               AGCAGCTACTGGCGT  66 76
 CLH39_08280 1845978 .. 1846001 - -16.8   -5.8096   CAGAAAAAACAAAAA          GCCGGTCATC GCAA GATGACCGGC           TTTTTGAGGAATTTG 100 41
 CLH39_08275 1845743 .. 1845770 -  -7.1  -5.32944   GCCAGAATCAAAAAA        GCCGAAACA GTGCTCATGT TGTTTCGGC         TTTTTTTATGGCTGA 100 56
 CLH39_08260 1841385 .. 1841411 - -15.8   -3.9122   TATTGCTTGAAAGAA         CGCGCGCAGGGC CAT GCCATACGCGCG         TTTCTGGAGCAGGTG 100 76
 CLH39_08250 NONE
 CLH39_08245 1837525 .. 1837537 -  -4.8   -3.2614   GATTTGGCATATCAA                GCGA TGTAT TCGC                GCAAGTTGGGGATGA  50 54
 CLH39_08240 1836660 .. 1836672 -  -3.4  -2.61264   GTTTTCATGGAGAAG                TGTC CTTGT GACA                GCAAAAGGGGGTGGG  40 42
 CLH39_08235 NONE
 CLH39_08230 1834419 .. 1834438 -   -15  -5.50723   TCAGGAAAAGAAAAA            CGCGCAGC CTGG GCTGCGCG             TTTTTTGCACTCTTG 100 90
 CLH39_08225 1833512 .. 1833537 -  -5.4  -4.72272   CGGTTTGATGAAAAA         CCATCGC-GGC GTGCT GCCTGCGATGT         TTTTTTTGTCGCCGG  73 123
 CLH39_08215 NONE
 CLH39_08210 1832144 .. 1832177 -    -6  -2.62933   GAAGTCTTGATAGTA     GCAAGCTG-TACGGT GACAT ACCGTCGCAGCCCGC     TCTCCAGTAAGGTAT  50 50
 CLH39_08205 1831150 .. 1831170 - -12.6  -6.06529   TACATACAAAAAAAA            GCCCTGGA AAGAA TCCAGGGC            TTTGAAGGCTTGCTC 100 250
 CLH39_08200 1830408 .. 1830423 -  -2.6  -4.25104   CCTGGCCGAGCAAAA              CAGCCAT TTG AT-GCTG              TTGGGCGGCGAGCCC  59 188
 CLH39_08190 1828767 .. 1828788 -  -2.9  -4.07568   TCGCGCTTTGGAAAA           TACGGCC TATATGGT GGCCGTC            GGTGAGTGTGGTGAA  58 223
 CLH39_08180 1825668 .. 1825714 - -16.1  -4.06502   GAGGGCCAAACGAAA GCGGCCTGTAATTGAAATACCC TTAG GGGCAT-CCAATTACAGGCCGT TTTGTTTTTTGGGTT 100 135
 CLH39_08170 NONE
 CLH39_08165 1822260 .. 1822297 - -10.8  -4.98531   GTGCCAAATGAAAAA   GACGGCAAAGCAAGC AAATGTGAG GCTTG-TTTGCCGTC   TTGAACAGACGCCGG 100 54
 CLH39_08160 1821870 .. 1821904 -  -7.3  -3.34534   CAGATGATAGAGCAA    GGCACCGTTACCAGCCT GTC AGG-TAA-AACGGTGCC    TTTGTCAGCCGATAC  58 138
        xdhA NONE
        xdhB NONE
        xdhC NONE
        guaD 1813870 .. 1813895 -    -6  -3.38991   ATCTCGCCAAGAAGA         GGGGGGAGCC GGGGCT GGCTCCCTAC          TGACGGGATCAATGT  57 171
 CLH39_08125 NONE
 CLH39_08120 NONE
 CLH39_08115 1810325 .. 1810345 - -12.6  -5.49569   GAGCAAGATAAAAAA            CCCGGTCT GAATA AGACCGGG            TTTTTTTGTGCTCAT 100 185
 CLH39_08015 1786117 .. 1786138 - -15.9  -4.72846   CCATAGATGCAAAAA           GGCCCTGCA CTAG TGCAGGGCC            TTTTCTCGTCACCGA 100 57
 CLH39_08005 1784011 .. 1784042 -  -7.2  -2.73007   AAGAGTTCGCCAAAC      CTTAACGGCCCG TTTTTATG CGGGCCGTTTTG       TATCTGGGTCACTTT  56 42
        uraH NONE
 CLH39_07960 1775314 .. 1775341 -   -15   -5.5604   CGAAGCAAGAAAAAA        CCCCGACATGAT TTTC ATCATATCGGGG         TTGGAAGTTACTACG 100 78
 CLH39_07910 1762936 .. 1762960 -  -8.5  -2.82516   GCTTTCAGCAGCAGA          CCGCAGGCC AGCGAAG GGCCTGCGT          GCGGTTAATCAGAGA  59 41
         rho 1761613 .. 1761631 - -10.3  -3.35813   GCCCATCGCAAGCAA             GCCTCTC GTATA GAGAGGC             TTGCGCAGGATGTTC  75 44
 CLH39_07900 1760123 .. 1760137 -  -8.5  -6.28967   CAGAAACAAAAAAAA               CCGCC TTGTG GGCGG               TTTTTTTGACTACTG 100 56
 CLH39_07860 NONE
 CLH39_07855 1750260 .. 1750290 -    -9  -3.88946   CACGGGATACAACAA       CCCCGCAAGCCATG GTG CATACCTTGCAGAG       TCTGGTTTTGGGCGA  72 368
 CLH39_07840 1743087 .. 1743108 -  -2.8  -4.87786   TGAATCCGAGAAAAA           GGGCGTCC CGAGTC GGTCGCAC            AATAAATCAATGCGA  70 86
 CLH39_07835 1742142 .. 1742163 - -15.9  -5.52986   ACGGCAGTAAAAAAA           GCGCCTTGG GCAA CCAAGGCGC            TTTTTCTTTGGCTCG 100 230
 CLH39_07825 1738268 .. 1738288 - -14.1  -5.63645   CCAAAAGACAAAAAA            GCACATGCA AAC TGCATGTGC            TTTTTTTTGTGCGCG 100 139
 CLH39_07770 1728418 .. 1728444 - -10.3  -5.18371   GGCCATAAAAGAAAA        CCCCAAAAACCT ATCA AGGTTTT-GGGG         TTTTTTCTTGCCTTG 100 127
 CLH39_07690 NONE
        rsgA 1711888 .. 1711907 -  -6.4  -5.24129   CGCCTTCACAAAAAA            GGGGCA TTTTGCTT TGCCCC             TTGTTCCCTTAATAG  90 34
 CLH39_07670 NONE
 CLH39_07665 1708921 .. 1708945 - -11.4    -4.128   AGGCTCAGACAGAAA          GCCCTCCTGC TTATG GCACGAGGGC          TTTTTTGTGGGTACA  91 403
        mltB 1702179 .. 1702213 -  -2.1  -4.37886   TCAGCGCGTAGAAAA     CGCCACGATCG TGTTCATTGTGTG TGACCGTGGCG     ACCGTTACCTGTCTA  62 54
 CLH39_07555 1685736 .. 1685763 - -16.4  -5.47218   GCTCATCCAAAAAAA        TTAAGGCCCCGC AAAA GCGGAGCCTTAA         TTGTAGCCTTAGCTA 100 65
 CLH39_07550 NONE
         gph 1684147 .. 1684159 -  -4.1  -4.30576   TGCGGAGTATGAAAA                CTTGC GCA ACAAG                TTGGCGCAGTTGCAT  65 161
 CLH39_07535 1681737 .. 1681788 -    -4  -5.11063   ATCAGTCAACAAAAA GCGCC--CTTGCCGGATCATGAGT-AC TGG GCGACTCA-GA-CCGACAAGCTGGCGC TGTTGAAGAAAGATT  78 39
 CLH39_07520 1677965 .. 1677981 - -10.8  -4.60041   ACTGATGTGTAAAAA              CGGCCC ATGTA GGGCCG              TTTTTTGATTTAGCA 100 54
 CLH39_07510 1676667 .. 1676684 - -14.1  -4.07885   GATGTCTTGTGAAAA             GGGGGCG GTGC CGCCCCC              TTTCACGTGCCGTCA 100 38
 CLH39_07500 1672976 .. 1673000 -  -2.2  -5.03314   GCCATCCTGAAAAAA         GAACCGG-AAC GCAT GTTGCCAATTC          TTGAGCTCTTGTATC  77 230
 CLH39_07485 1670303 .. 1670325 -  -9.2  -5.42259   TGAGTGCCAAAAAAA           GCCAAGGA GAATGAG TCCTTGGC           TTTTTTCATTGAGTC 100 47
 CLH39_07475 1668672 .. 1668686 -  -5.7  -3.14468   GCCGAGCAGACCGAA               GAGCA AGTCA TGCTC               TTGTTTGCCGCCATG  49 183
 CLH39_07460 1665206 .. 1665238 - -17.9  -3.00022   CCCAGCTGATACAGA      CAGCCCCTTGTTG AATCTGA CAACAAGGGGCTG      TTTTTATGCCTTGCC 100 75
 CLH39_07440 1662148 .. 1662168 -    -4  -3.43785   GAGCAGATGAAGGAA           GCGGCG-CAG AAG CTGGCGC-GC           ATTATTTCTGAGCTT  49 186
 CLH39_07430 NONE
 CLH39_07425 1659366 .. 1659376 -  -6.8  -3.33696   TCTGCCCTGAACCAA                 GCAG AGC CTGC                 GGATTATTGCTCTGC  58 29
 CLH39_07400 1654924 .. 1654946 - -16.3  -4.83169   ATCGGCCTACAAAAA           GGGCCAGCC TGAAT GGCTGGCCC           CTTGTGCGTCAAGAT 100 47
 CLH39_07395 1654134 .. 1654151 -  -8.4  -5.25699   AGCACATAAGAAAAA             GGGACC GATTCA GGTCCC              TTGTTTTCCTTGGAG 100 51
 CLH39_07390 1653172 .. 1653182 -  -2.4   -4.2828   TTTGATTCAGGAAAA                 GCGG GTG CTGC                 GGGGAACCAATTGTG  60 183
 CLH39_07385 1652303 .. 1652318 -  -4.6  -4.13767   TTTGTTAGTTCAAAA              CAGCGC GTCA GCGGTG               GCCAGTTCTTGTTCT  63 4
 CLH39_07380 NONE
        actP 1649976 .. 1649995 -   -10  -4.79223   GCACATCAGTAAAAA            CAGGGCAC CGAA ATGCCCTG             TTTTTTGTCCCTGCG 100 68
 CLH39_07370 1649201 .. 1649236 -  -7.5  -3.14132   TCTGGTGCTGACCAA    GCCGGTAAAGCCCGC TTCGCT GCGAGCTTTTCTGAC     CGCGCAAATTAAAAC  59 34
 CLH39_07360 NONE
 CLH39_07355 1643585 .. 1643611 - -15.2  -4.72272   CTTCGTGATGAAAAA         GCCCCTGATCTT GTT AAGGTCAGGGGC         TTTTTCTGTTCAGGG 100 58
 CLH39_07340 1639454 .. 1639468 -  -5.8  -4.62957   ATAATCAAATGAAAA               TTTTTG TCA CAAAAA               GATCGAAATTGAAAA  76 76
 CLH39_07335 1637125 .. 1637135 -  -2.4  -3.86346   GCAGCCCGCTACAAA                 CGCC CTT GGCC                 CATCATTCTCGCTAT  53 500
 CLH39_07325 1635166 .. 1635208 -  -4.3  -3.14344   TATCTGGGTGAGCAA CTG-CCGGTGCATCACCCTAA AAT TTAAG-TGATTCAGCGGGCAG TGGCTGTAAAGGGGC  48 15
 CLH39_07315 1633296 .. 1633324 - -17.6  -3.14564   TTATCGCGGTATCAA        CACAAAGGGCCA TCAAT TGGCCCTTTGTG        TTTTTCTCTGGTGGA 100 233
 CLH39_07305 1631684 .. 1631697 -  -2.4  -2.50035   GAGAGACTAAGACAT               CTGA TTATAG TCAG                TGTTGTCTTGGAGTC  38 66
 CLH39_07300 1630889 .. 1630902 -  -3.1  -4.72986   GACGGCTAGTAAAAA               TGCGGC TCA GCC-CA               AACAGTCCCCGCATT  66 81
 CLH39_07290 NONE
 CLH39_07285 1627825 .. 1627843 - -11.7   -5.1287   TTCAGACGCAAAAAA             GCCCGCT GAAGT AGCGGGC             TGATTTACGGTGTTA 100 72
 CLH39_07260 NONE
 CLH39_07255 1621069 .. 1621084 - -10.4  -5.60993   TTGCTTATAAAAAAA              GCCCTC GAAA GAGGGC               TTTTCTTTTAGGCCT 100 104
 CLH39_07240 1618230 .. 1618247 -  -9.9  -5.64274   GCAGGCATAAAAAAA             CCCATTC AAAA GAATGGG              CCCTGGCTTGCTGGC 100 48
 CLH39_07230 1615771 .. 1615792 -  -6.5  -3.09681   CAAAATGGCACGCAA           GTCGGCCCCG GTG CAAGGCCG-C           TCTTTGCCAGCCCCA  52 420
        ehuB 1607241 .. 1607275 -    -4  -3.48924   TCAGGTTCCAGACAA     GGGCAGGCGGTACACC TTC AGTGCGCTGTCGGCCC     TTGCAAGGGGCCGCG  50 77
        ehuC 1606540 .. 1606556 -  -3.7  -3.08679   GTGTCCCATTCAATA              CCAAACA GCA TGTTCAG              CTCCTTTGCGCACGC  46 22
        ehuD NONE
        ehuA 1605019 .. 1605060 - -13.8  -3.53091   ACCTTTTCGGCCAAA GCTGCTTGAAGGTGGCTC AGGGCA GAGCCACCTTCAAGTGAC  GTAGAGCGCAAGTGT  86 41
 CLH39_07140 1598281 .. 1598314 -  -6.7    -5.186   CAAAATAGATAAAAA     GAACCGCCC-CCCTTA ATT CAAGGTTGGGCGGTTT     TTTTATGCTGCTTTT  91 121
 CLH39_07130 1595859 .. 1595890 - -21.8  -3.78034   GATTTATATCAATAA      GAAAGGGACCGCTT TTTC AAGCGGTCCCTTTC       TTTTGTTTGGTTCCA 100 46
 CLH39_07120 NONE
 CLH39_07115 1591237 .. 1591257 - -12.6  -5.28176   TCTACTTATAAAAAA            TGGCCTCC TTAGC GGAGGCCA            TTTTTATTTAGCAGT 100 72
 CLH39_07105 1589042 .. 1589053 -  -5.8  -2.52795   AAGTGTTGGAAGCGA                TGGC CTGA GCCA                 TCAGTTGGACTTGGG  49 26
 CLH39_07085 NONE
 CLH39_07080 NONE
 CLH39_07075 NONE
        nadD 1581672 .. 1581684 -  -4.8   -3.1474   ATAAAAAGAACTATA                CAGG GCGCG CCTG                TGGGTGGGAAAGATA  48 8
        rsfS 1581202 .. 1581223 - -11.5  -5.79595   TCGTAAAAGAAAAAA           GGCCGCATC GTAA GCTGCGGCC            CGGGTATTGCCGACA 100 56
 CLH39_07060 NONE
 CLH39_07055 NONE
 CLH39_07050 1579116 .. 1579129 -  -3.1  -3.68988   GGGCATGCAAGAGAA               CACGA GTGC TCATG                AATAAACGTCCTGCT  52 46
 CLH39_07045 1578723 .. 1578745 -  -3.3  -4.61231   TGATACGGGTAAAAA           CAGGCCCGC TTGTC GCGAGCTTA           GCTATCGTATCAAGG  66 106
 CLH39_07040 1577423 .. 1577443 - -16.9  -3.59979   CTGGTCCAGCGTAAA            GCCCACCGA AAT TCGGTGGGC            TTTTTTTTACTGCCG 100 506
 CLH39_07005 1571996 .. 1572008 -  -4.8  -4.47707   CTGTATCAAAAATAA                GGTG GCATT CACC                GCCCTGAACCGTCTA  68 38
 CLH39_07000 1570977 .. 1571002 -  -8.4  -6.09888   TTTTAATAAAAAAAA         GGATCAT-CGC CGTTT GCGTATGATCC         TTATCTGATTCCAGC 100 108
 CLH39_06995 1569366 .. 1569383 -    -4  -2.96125   AGACATAAATACAAG             GGCCGC AGCAAG GCGGCT              TTTTAAGTGAATCAG  45 37
 CLH39_06990 NONE
 CLH39_06985 1567243 .. 1567262 -    -2  -3.97139   CAAGTGCAACAAGAA            GCCGCCTA ATGA TAGGCCTC             AGGTCCCGAAACCCG  55 88
       rpmE2 1566653 .. 1566668 - -10.4  -5.75342   GTGCGGTAAAAAAAA              GGCAGC CGAA GCTGCC               TTTTTTGCGCTGAAC 100 63
 CLH39_06975 NONE
 CLH39_06970 1563175 .. 1563200 - -11.1  -5.01553   AAGCGATAAAGAAAA         CGGGACCCGTT GAAT AACTGGCCCCG          TTTTTTTTTGTTTGT 100 207
 CLH39_06945 1556408 .. 1556421 -  -3.1  -3.70902   CCCTTGAGATCTAAA               TCAGC CTCC GCTAA                ACGAAAAAAGCCGCG  52 129
 CLH39_06940 NONE
        rpmG 1555888 .. 1555904 - -13.7  -5.81032   GAAGGGCAAAAAAAA              CCCCTGC AGG GCAGGGG              CTTTTTTTGAAAACC 100 66
 CLH39_06930 1553017 .. 1553028 -  -5.8  -3.30124   CGCCAGTCCCCAGAA                CCTG GGTG CAGG                 AACAGACAAGGAGCT  55 70
 CLH39_06925 NONE
 CLH39_06920 NONE
 CLH39_06915 1550003 .. 1550019 -  -5.1  -3.64822   ATGTTTTTAGCCAAA              GCATGAT TTA ACCACGC              ATTTGGCCATTGCCG  56 16
 CLH39_06910 1549235 .. 1549255 -    -4  -3.28712   GCGTTCGCCCGAGAA           TTC-CCGGC GTTC ACCGGAGAA            CTCACGACGCTCGCC  48 360
 CLH39_06900 1546178 .. 1546200 -    -7   -5.1861   TGTACTACTAAAAAA           TGAAGAGGCA GCC TGCCTGCTCA           GGTGGCTGCCGAAGT  91 23
 CLH39_06895 1545153 .. 1545186 - -11.1  -4.72272   TGGGGTGAGGAAAAA     GAATCAGCCATGATG TTGT CATCATGGCTGAGTG      TCTTTTAGCTTGGTA 100 82
 CLH39_06890 1544143 .. 1544161 -  -5.9  -3.65224   AGCCCACGTTAAGAA             GTAGCGC GCAAG GCGCTGC             TGGAACGGCTGATCA  59 200
 CLH39_06865 1539151 .. 1539170 - -12.2   -4.7497   GTCAGGCAGGAAAAA            GGGAGTGT GAAA ACACTCCC             TTTTTTGATGCTTGC 100 96
 CLH39_06820 1529962 .. 1529999 - -17.1  -3.25823   CTTTTTCGACATTAA   CACTTCTGGCCTTGGTG GTGA CACCAAGGCCAGATTTG    TTTTTACATGCCGTT 100 29
 CLH39_06800 1524355 .. 1524376 - -13.1  -5.92337   ACAGATTAAAAAAAA           GCCACTGTT ATGA AACAGTGGC            TTTTTTGTGTGCCGC 100 62
 CLH39_06780 1520117 .. 1520131 - -12.8  -4.54821   AGCTGAAGTAGAAAA               GGGGCG TGA CGCCCC               TTTTTTGTGCCTGTT 100 63
 CLH39_06770 NONE
 CLH39_06765 1516994 .. 1517027 -  -9.1  -2.86806   AGTAACTGACAACTA     CCTGAATAATCAAGA ATCT TCTTTATTATTCAAG      CACCCAGTTTATGAG  62 21
 CLH39_06760 1516187 .. 1516206 - -13.6  -5.88565   CGGATAATAAAAAAA            GCCCCCTT CGAA AAGGGGGC             TTGGGGAGTGCGGGG 100 50
 CLH39_06755 1514989 .. 1515006 -  -4.8  -2.97747   CTTCTAGAGGAGATA             GTCCGG GCCGTA CCAGAC              TGGGTCCTGCGCGAT  47 54
         maf NONE
 CLH39_06645 NONE
 CLH39_06640 1495031 .. 1495058 -   -15  -4.45544   GTGCACTAAGCAAAA        CAGGTAATGAGC ATAA GCCCATTACCTG         TTTTTTTATCAATCC 100 34
 CLH39_06615 1487921 .. 1487940 - -16.4  -5.90981   CGAGAGGAAAAAAAA            CGCCGCCC CAAA GGGCGGCG             TTTTTAGTCTTGCTG 100 42
 CLH39_06590 1481426 .. 1481447 -  -8.7    -3.922   AAAGTTTGAATCAAA           GCCTTTTGC ACAC GCAAAGGGC            TTTTTCATAGACACA  75 30
 CLH39_06580 1479475 .. 1479498 -  -7.4  -3.02263   AGATTGGGCGCAAGA          GTGGCTGGAT AGGA ACGCAGCCAC           CGGGTCGGACTTCTA  57 58
 CLH39_06575 1478055 .. 1478072 - -14.1  -4.76892   ACATGAATGCAAAAA             CGGGGCC AACT GGCCCCG              TCAGAAACGGCCTGA 100 49
 CLH39_06570 NONE
         nth 1476726 .. 1476740 -  -3.6  -2.52464   GTCCGGTTTAATGCA               CTGTTT GGT AAACAA               ATGTTGTTAAACCGG  42 52
 CLH39_06560 NONE
 CLH39_06555 1474830 .. 1474853 -  -6.6  -3.17229   ACGCGAGCAGGAAGA          GGCGACAGCT TAGA AGCGGTAGCC           GACCCCGATGGTGGC  56 11
        msrB NONE
 CLH39_06525 NONE
 CLH39_06520 NONE
 CLH39_06515 1467432 .. 1467488 - -21.2  -2.78547   TTACCGCATGAACGA CCTGCACAACAAACAAATATGGCGCC ATTGA GGCGCCATATTTGTTTTTCCTGCAAG CCGCCTTATCGGGAT 100 63
 CLH39_06495 1458675 .. 1458712 - -13.6  -4.68593   GTCATCATGGAAAAA   CACCCCAAAGATTGGA TTCAAG TCCAACTTTTGGGGTG    TAGTGCCTTTTTCGG 100 50
 CLH39_06480 1455354 .. 1455375 - -10.1  -4.39002   GAGCAATAAAAAAGA           CCGGCTGAA TAAA CCCAGCCGG            ATACTTGAGTTTTTT  87 99
 CLH39_06475 1453746 .. 1453758 -  -3.3  -3.05384   CTGGTTGGTAGGCAA                TGTGG ATG CCACG                ATTCATGCGCAAAAA  43 271
 CLH39_06460 1449195 .. 1449218 -  -7.4  -5.26119   CTGTCAAAAATAAAA          GAGCGTTGTCC TTG GG-CAGCGCTC          TTTTTTATATCCTAG 100 56
 CLH39_06450 1446799 .. 1446816 - -11.3  -5.54894   AATGCATGAAAAAAA             CCTCGCA ATTT TGCGAGG              TTTTTTTTGTCCTGA 100 120
 CLH39_06345 NONE
 CLH39_06340 1426018 .. 1426037 - -12.2  -5.63517   TGGTGAAACAAAAAA            GCCCACTA TGCG TAGTGGGC             TTTTTGTCGCCTGGT 100 113
 CLH39_06300 1413588 .. 1413614 -  -8.8  -4.43669   AGGTAAAAAAGGAAA        GGCAAGGC-CA TGTATT TGCGCCTTGCC         TTTTTATTTTTGGTC  86 195
 CLH39_06280 1410618 .. 1410637 -    -5   -3.6003   CAAAGCACTTCCAAA            CGCAACACG GCT CGTA-TGCG            CTATGCCAGGGGTTT  56 92
 CLH39_06275 1410161 .. 1410189 - -14.6  -4.74103   GTCCGAATGGAAAAA        GGGCTGATGACC TGTGT GGTCCTCAGCCC        TTTTTCATTCATGGT 100 55
        trxB NONE
 CLH39_06245 1402411 .. 1402446 - -15.6  -4.11048   ACAACATAACAACAA    CAAAAAAAAGGCCAGC GAAA GCTGGCCTTTTTTACG     TCTGTACCTAATGGA 100 46
 CLH39_06220 NONE
 CLH39_06215 1396850 .. 1396876 -  -8.8  -4.20783   ACTTCATGGAACAAA        GCCCGCTTGAA GCGGTG TTC-AGCGGGC         ATTGTTTTGATTTGC  78 180
 CLH39_06195 NONE
 CLH39_06180 NONE
 CLH39_06175 1389734 .. 1389751 -  -3.4  -3.72784   GGTAGAAGAAATCAA             GCAACA TGGCTG TGCTGC              CTTAGTTTGTCCAGC  52 4
 CLH39_06170 1388520 .. 1388536 - -12.3  -5.95539   TCGTAAATAAAAAAA              GACCCGA AAT TCGGGTC              TTTTAACTTGCTGCT 100 57
 CLH39_06090 1371410 .. 1371427 - -11.3  -5.80951   ATGGAAAACAAAAAA             GGCCATC TTGC GATGGCC              TTGGGGAAAAATCGG 100 67
 CLH39_06085 NONE
 CLH39_06080 1368775 .. 1368797 - -13.5   -5.8187   TACGTAACAAAAAAA           GAACCGCTG ACAAG CAGCGGTTC           CGTAGGGGCTGAGCA 100 47
 CLH39_06075 1366459 .. 1366481 - -10.5  -3.01791   AGCTTGGGGTTAAGA           GATGGGGCG TACTC CGCCCCGTC           CCTATGCTTAGCGAG  70 33
 CLH39_06070 NONE
 CLH39_06065 1365486 .. 1365508 - -14.9  -5.47218   CGCTATCGAAAAAAA           GCCCACCAG GGATA CTGGTGGGC           AAAACAGCAAGAAAA 100 49
 CLH39_06060 1362452 .. 1362473 - -15.9  -5.05505   AGTAGAAAGTAAAAA           GCCCGGTAC TTTT GTACCGGGC            TTTTTTACGCCTGCT 100 73
 CLH39_06030 NONE
 CLH39_06025 1353458 .. 1353482 - -12.2  -5.71712   TTGGATACAAAAAAA         CCACCAGCTGC TTCG GC-GCTGGTGG          TTTAGCTTGCGTTTC 100 49
 CLH39_06015 NONE
 CLH39_06010 1351396 .. 1351413 - -12.7  -5.71712   GCGGAGATAAAAAAA             GCCGGCT CGAA AGCCGGC              TTTTGATCAGAGGGT 100 56
 CLH39_06005 1349993 .. 1350007 -  -2.8  -4.32034   CCACTATCAGCAAAA               TCCG GATTTAA CGGA               GATGGGCAGACTGCA  64 173
 CLH39_05995 1348547 .. 1348562 -  -3.2  -5.07652   GTGGGCAAAAGAAAA              CGTGTG TGTT CATACG               GCAGTCCTTGCGGTG  76 19
 CLH39_05990 NONE
 CLH39_05985 1345720 .. 1345748 - -15.3  -4.15565   TTCATGAGCTTAAAA        CCCGTGTCAGCCA AAT CGGCTGAAACGGG        TTTTTTATTGAGCCT 100 73
 CLH39_05975 1343485 .. 1343499 - -11.4  -3.14468   GCGCATGATATTGAA               CGCCTG GCC CAGGCG               ATTCGGGGTTCTGTT  69 88
 CLH39_05965 1342137 .. 1342154 - -11.3  -4.72272   GTGGTCGATTAAAAA             GGGAAGC CTAG GCTTCCC              TTAGGAATCTGGAGC 100 35
 CLH39_05960 NONE
 CLH39_05955 1341905 .. 1341924 - -12.2  -5.86976   GCAGAAAAGAAAAAA            GCCCAAAC CGAA GTTTGGGC             TTTTTGAATTTGGAG 100 36
 CLH39_05950 NONE
 CLH39_05910 1331133 .. 1331157 - -14.3  -4.18494   GAGCCTGATGCAAAA          GCCTGCTTGCC ATC GCCAAGCAGGC          TTTTTTATTGGAAGC 100 140
        fdnG NONE
        fdxH NONE
 CLH39_05880 NONE
        fdhE 1320714 .. 1320742 - -10.2  -5.71712   GCGGATATAAAAAAA        GCCCGGATCAGC GTTGA GCCAGTCCGGGC        GTTTCTTTACAGGGC 100 32
 CLH39_05870 1319552 .. 1319568 -  -6.5  -2.52464   TTTGGTTTGAAGGCA              TCACGGC TGG GCCGCAA              GTCGCAGAGCAGGCT  52 9
 CLH39_05815 1307145 .. 1307164 - -10.6  -5.33026   TAATTCAAACAAAAA            GGGGCTGC TGAT GCCGCCCC             TTGCTTTTATAACGT 100 62
 CLH39_05810 1305148 .. 1305161 -  -2.4  -5.24129   CGGTTGCAGAAAAAA               CATG GATGCT CATG                GCTGTTCCTTTTGCT  78 335
 CLH39_05805 1304655 .. 1304684 - -15.9  -4.25104   TGGCTCCCAGCAAAA       TCGCCTGTATGTA GTTG CACATACAGGCGA        GGGCGTTTTTCAAAA 100 55
 CLH39_05795 NONE
 CLH39_05790 NONE
 CLH39_05785 NONE
 CLH39_05780 1300252 .. 1300269 -  -4.1  -2.89421   CCAATAATGAGGATA             TGTGGTG CTTG CATCACA              GCTCCAGACCGCCAG  45 21
 CLH39_05775 NONE
        mhpB NONE
 CLH39_05765 NONE
 CLH39_05760 NONE
 CLH39_05755 1295364 .. 1295380 -  -2.1  -2.70932   TGTCCTTGCTAATCA              TGCGGCC TGC GTCAGCA              AGCGGGTTTGTGCCA  39 6
        dmpG 1294246 .. 1294280 - -12.2  -3.86897   TTCAGGGTGCAGAAA    CCCGCTCACCGCGTG GCAAGG CA-GCGCTGAGCGGG     GGTAGAACTTTTTTT  86 54
 CLH39_05745 1292750 .. 1292763 -  -9.5  -4.60924   GAAATCGCTGAAAAA               GGGGG CAGT CCCCC                GAGCAGCCCCCAAGC 100 184
 CLH39_05740 1291915 .. 1291934 -   -15   -5.5112   CGCAGGAAGAAAAAA            GCGGAGCC CCTT GGCTCCGC             TTTTTTTATTTGCTG 100 31
 CLH39_05730 NONE
 CLH39_05725 1288845 .. 1288858 -  -2.3  -2.73875   TTTTTGTGAACATGA               CTCTG CACC CAGGG                GGCGTGATTGACGAT  39 139
 CLH39_05720 NONE
 CLH39_05715 1283328 .. 1283343 -  -3.2  -2.78384   TCCTGCCGTATCATA              CCGC CCTGCGCC GCGG               TAGCGACGTAGCATT  41 60
 CLH39_05710 NONE
 CLH39_05705 1279023 .. 1279049 -  -7.4  -2.64735   AGGCCAGCCAGATTA         CGTTGGAGTT GCTGGAA AACTCCAACA         CCCGGACGCCCTGCG  50 432
 CLH39_05690 NONE
 CLH39_05685 1275065 .. 1275102 - -15.1  -4.27886   TGGGAAATACATAAA   GAACAAGCCAGAATCCCA AAC TGGG-TTCTGGCTTGTTG   GTGTAAAAAAACCGG 100 80
 CLH39_05675 NONE
 CLH39_05670 NONE
 CLH39_05665 1269966 .. 1269988 -  -6.2  -3.39908   GTGTTGGAAAATATA           CTGATGCCGA CAT CCGACATCCG           ACATCCGACATCCGA  57 112
 CLH39_05605 1253452 .. 1253481 - -11.5  -3.59262   TTGCAGAGGCTCAAA       CAAGCCCGCTTGC CAAA GCAAACGAACTTG        TTTGGCTCGTTCTTG  79 52
 CLH39_05600 NONE
        queC NONE
 CLH39_05575 1246788 .. 1246798 -    -4  -2.73875   TTTGGGTGAAGATGA                 TTTC AAG GAAA                 TTGGCGACATGATTC  43 159
 CLH39_05565 NONE
 CLH39_05560 NONE
 CLH39_05555 NONE
        pdxK NONE
 CLH39_05545 1238752 .. 1238769 -  -9.9   -4.4648   ACCTGGACTATAAAA             CCTCAAG TTAA CTTGAGG              TCAAGGGGTGTCAAG  90 514
 CLH39_05535 NONE
 CLH39_05530 NONE
 CLH39_05525 1234280 .. 1234294 -    -7  -2.63102   ACCAGTCGCAGAGCA               CGCGCC ACA GGCGCT               AGCCTGTTTGATAGT  52 48
 CLH39_05520 1232836 .. 1232866 - -18.4  -4.84918   TGCACAAATAGAAAA       GGGGTGGCCTATCT TCG AGACAGACCACCCC       CAATCCGATCAAGTT 100 46
 CLH39_05495 1228058 .. 1228082 -    -7  -3.07935   AGCGTAGGGATGCAA          GCGCCCTGTT GTTTG ACCGGGGCGC          TTGTGGTTCGTCCGG  56 230
 CLH39_05475 NONE
 CLH39_05470 1222097 .. 1222126 -  -9.4  -4.12902   TAACGAGGCTCAAAA      CTGAGGCGGCCAGC AAGG GCTGGCCGC-T-AG       TGAGGGAGCGTCTGC  79 50
 CLH39_05460 NONE
        murI 1218558 .. 1218573 -  -4.6  -4.13767   GGGCTGACTTTAAAA              CCGTCC GGGG GGAGGG               GCGTCATGTCATCAC  63 182
 CLH39_05450 NONE
 CLH39_05445 NONE
 CLH39_05440 1213176 .. 1213204 - -17.5  -5.87996   CAATCAATAAAAAAA        GCCCCGATGCC AAGCAAA GGCATCGGGGC        AAAACGTGTGCGTGG 100 97
 CLH39_05410 1200750 .. 1200783 -  -8.2  -2.87132   CTGTTCCCCTACAGA     TCATTGCCGCCA CCTAGTTGTC TGGCGGCAATGC      TGACTAATACTTAAG  60 59
 CLH39_05350 1190179 .. 1190189 -  -8.2  -2.53213   TAACTCTTCAATTCA                 GGGC TTA GCCC                 CTTGCTGGATACCGG  58 12
 CLH39_05345 1188632 .. 1188654 -  -7.6  -2.83908   AAACCTATTACGAGA           TGCTGGAAGG CCG CCTGCCTGCA           CACGGTGAACCCACC  54 358
 CLH39_05325 1183749 .. 1183774 - -15.5   -4.7261   AGGGACGAAAACAAA         GGGTGGC-ACCG ATA CGGTTGCCACCC         TTGACGGTGTAGGGT 100 81
 CLH39_05320 NONE
 CLH39_05315 NONE
 CLH39_05310 NONE
 CLH39_05305 1181008 .. 1181022 -  -2.8  -2.54193   GAGGACGTTAAGCCA               GCCATT CCC AACGAC               CTTTTATCAGGAGCT  40 3
 CLH39_05300 1179849 .. 1179867 - -14.6  -5.27335   GGCGCTAAAGAAAAA             GCCAGCTC ATC GAGCTGGC             TTTTTTCTTGCTTGC 100 102
 CLH39_05290 1178494 .. 1178509 -  -6.1  -2.83271   CGAGCTGCACAAGTA              CACCG GACAAA CGGTG               AATCTGTCCTTGCAG  49 515
 CLH39_05270 1175985 .. 1176000 -  -3.2  -3.02144   CGACTCCTTCCAATA              CAACGC GCAA GCGTTC               GGTGGGTGTGCTGTT  43 39
 CLH39_05250 NONE
 CLH39_05245 1171348 .. 1171360 -  -5.5  -2.77962   GGGGACAGGGCAAAT                TCCAG GCT CCGGA                GCTCGACACCCTGGG  47 496
 CLH39_05220 1166954 .. 1166964 -  -2.4  -4.13244   TTACAAGAAGAATAA                 GGGG GGC CCCG                 CATCGGGGCCTGTAA  57 52
 CLH39_05215 NONE
 CLH39_05210 NONE
        purH NONE
 CLH39_05200 NONE
 CLH39_05195 1162788 .. 1162815 - -22.8  -5.47159   CGCGAACAGAAAAAA        GCCGGGCCGTTC ATAT GAACGGCCCGGC         TTTTTATACATAGCA 100 49
 CLH39_05185 NONE
 CLH39_05170 1157712 .. 1157743 - -13.1  -5.37593   CGCCAAATGAAAAAA     GGGCCGCG--GCTGA AAGC TCAGCGGCGCGGCCC      GATATTGCCAGAGGT 100 58
 CLH39_05165 NONE
 CLH39_05160 1155489 .. 1155506 - -11.3  -4.34811   AAGAAATATTTAAAA             GGTGCTC AGAT GAGCACC              TTTTTTATTTGATGT  91 145
 CLH39_05115 NONE
 CLH39_05110 1144445 .. 1144502 -  -4.9  -3.65475   CACCCAAAAGAAAAC CCCTGATG-CTGAAACCCGATGCAGCC AAGTAA GGCTGC-CAGGTTTTCTCCCATCAGGG GTGTTACAGGCCGGG  56 228
 CLH39_05105 1143322 .. 1143336 -  -5.6  -3.36823   CTGGTCAAAAGCTAA               GCATCC TGA GGGTGC               GAGGCAGAAGCAAGG  54 7
 CLH39_05090 1141499 .. 1141520 - -15.9  -5.64274   GCACCTACAAAAAAA           GCCCGTCCA GATC TGGACGGGC            TTTTTTCTTTTCTGC 100 49
 CLH39_05070 1139737 .. 1139753 -  -5.1  -2.71731   TTCACCCCCTAATCA              GGCCA GAAAACT TGGCC              ACAGGGGGAACACCA  48 6
 CLH39_05065 1138108 .. 1138139 - -17.5  -5.38054   GCTGACAAAGAAAAA      GGCCTGATTTCGT GGAGAG ACGAAATCAGGCC       TTCTTGTTGACTGCG 100 97
 CLH39_05040 1131783 .. 1131802 -  -5.7  -3.37901   AAACACGTGAATTAA            GCCGCGTC GTTTG GACG-GGC            CAGCAGATTGAACAG  57 2
 CLH39_05020 NONE
        ybgC NONE
        tolQ NONE
        tolR NONE
        tolA NONE
        tolB NONE
         pal 1122503 .. 1122530 - -14.8  -5.24531   AGCGCCGATAAAAAA        CGCCGCGGCGTT AACA ACCGCCACGGCG         TCGGAACCACTTGGT 100 52
        ygbF 1121605 .. 1121628 -  -8.8  -5.44119   GCCACCTGAAAAAAA          CAGACCGGGT CTGA ACCCGGTCCT           TGTGGCACTGCGCGC 100 48
 CLH39_04980 1120464 .. 1120477 -  -2.3  -3.73224   TGATGTTGCATCAAA               CTAGC GAGA GCGAG                GGGATGGCGCGCATG  51 302
 CLH39_04970 NONE
 CLH39_04965 1117998 .. 1118034 - -29.7   -4.0371   CAGTCTGTAGATAAA    CAAAGCCCCGTGTCGGA CTC TCCGACACGGGGCTTTG    TTATAAGTGGCCCGT 100 194
 CLH39_04920 1107981 .. 1107992 -  -3.6  -3.89346   TGCTGACGCTATAAA                CCAC TGCT GCGG                 CCTGCGGGGGCGCGG  57 411
 CLH39_04900 NONE
 CLH39_04890 1098967 .. 1098998 - -13.8  -3.35813   GGTGATTCCAACCAA      CGAGGAACTGATCA TTGC TGAACAGTCCCTCG       CCTTGGTGCGTGCCA  84 64
 CLH39_04865 1094285 .. 1094322 -  -4.8  -4.90906   CCAGAACAGCAAAAA  GCAG-CGGGGGGAG-CGC TCAA ACGGCCCCCCCCATCTTC   AAAACAGCCCTTCCG  76 44
 CLH39_04860 1093527 .. 1093551 -  -4.3  -3.11704   AGAAGAGTTGAAAAC          TGGCGTTACAA CAA TTGTAACGATA          TTGCTGCAGGGCAGA  48 99
 CLH39_04855 1092281 .. 1092300 -  -3.4  -3.16191   TGATAGTCCTATCAA            TCAGCCTC TAAC GGGGCTGT             CTTGAAAAAAGAGAC  44 72
 CLH39_04850 1090688 .. 1090716 - -17.5  -5.52384   GCCTCATCAAAAAAA        CAGGCCGATTTCC CTA GGAATTCGGCCTG        TTTCTTGTTGGGCTG 100 115
 CLH39_04845 1089440 .. 1089450 -  -6.8  -3.66874   GCAATTGCATTCAAA                 CCGA CCT TCGG                 CCCCACCTGACAATT  63 484
 CLH39_04835 NONE
        groL 1086699 .. 1086720 - -14.5  -5.75342   TTGGGCGAAAAAAAA           CCGGATGGA AAAA TCCATCCGG            TTTTTGTACTAAAAG 100 100
 CLH39_04825 NONE
        pyrF 1085265 .. 1085302 - -22.3  -4.21772   CTTAATAAATAAGAA   GCCCCACTCACTTTGGAT TGA ATCCAA-GTGAGTGGGGC   TTTCTTGTATCTACA 100 147
 CLH39_04805 1081541 .. 1081558 -  -7.7   -4.2123   CAGTCAGCGAAGAAA             CCGCCAT GGAA ATGGCAG              CGGGTGCGCTGGAAG  74 275
 CLH39_04770 1076582 .. 1076600 -  -8.1  -2.93393   TCGCACTCGAGAAAT             CACCCAC AACAG GTGGGCG             GATAAAACGATTATT  60 107
 CLH39_04765 1074915 .. 1074942 -  -9.8  -5.00616   TTGGCTGTCAAAAAA        GCGGCGATGTCT TTAC AGGCATCGCCGT         TTTTTTATTCCTGAG 100 116
        rsmD NONE
 CLH39_04750 NONE
 CLH39_04745 1071813 .. 1071831 - -11.7    -3.885   ATCCCTATAGAACAA             GCCCTGC TCATG GCAGGGC             TTTTTTTATTCTGCT  86 40
 CLH39_04730 1067040 .. 1067070 - -15.5  -5.37865   CCAAGAATGAAAAAA       GCCTGGAGTCGGT GCAAT ACCGATTCCAGGC       TTTTTGGCTTGATGC 100 86
 CLH39_04720 1065420 .. 1065435 -  -7.6  -3.09878   GTCAGCTAGTTAACA              GCCTAA GTAT TTAGGC               TTGGTTTAAATGATG  59 20
 CLH39_04715 1064580 .. 1064590 -  -2.4  -2.77235   CCAAGCATCCAATTA                 GCCG TGA CCGC                 GCTGTTTGGCGATCT  39 12
 CLH39_04705 NONE
 CLH39_04700 1062809 .. 1062821 -  -3.3  -3.34398   CGTGCTCCTCAAACA                GCACG CCC CTTGC                ATCCCGCCCCAGCAC  47 334
 CLH39_04695 1058852 .. 1058864 -  -5.5   -2.8294   TATGCGTCAGAAGTA                CGCCA CCG TGGCA                ACGCGTGAAGAAGCG  48 180
 CLH39_04670 NONE
 CLH39_04665 1050217 .. 1050252 - -12.1  -4.54821   ATGTTAACCATAAAA   CAAAGGCGGC--CAAGT GAAA ACTTGCAGCCGCCTTTG    TTTCGTTTGCCACGT 100 71
 CLH39_04630 1041119 .. 1041161 - -22.1  -3.50853   CCGGGTGAAGCACAA GGAAACGGGGCCTGGAGCG TGTGC CGCTCCAGGCCTCGTTTTC TATTGACGGCTTAGT 100 36
 CLH39_04615 NONE
 CLH39_04610 1036217 .. 1036238 - -15.9  -5.78622   GCAGCCCAAAAAAAA           CAGCCCCTG AAAC CAGGGGCTG            TAATTCCAACAATTA 100 38
 CLH39_04590 1028336 .. 1028369 - -13.3  -3.60627   GTAGCGGATCTGAAA     TGCCCCTAAGGAGTCA GCT TGA-TCCTTGGGGGCA     TTTTCTTGTCGTTAC  86 53
 CLH39_04580 1025576 .. 1025601 -  -7.5  -2.90212   GGAGGATTTGATAGA         GGTGCTGCC CCGTGTTT GGCAGCGCC          TTCTGTCCAGGGCCT  57 46
 CLH39_04520 1011721 .. 1011745 -  -6.4  -2.86102   TCAGCAGAAAAAAGC         TCAGGCCTGAC TGAA GTC-GGCCAGA          ATATCGTTGCCTTCA  51 1
 CLH39_04515 NONE
 CLH39_04510 NONE
 CLH39_04505 1008414 .. 1008437 - -10.3  -6.00814   AATAAGCAAAAAAAA          GCACCCCTC AACAAA GAAGGGTGC           TCAAAGGAATCAGAA 100 112
 CLH39_04480 1002734 .. 1002752 -  -2.3  -3.18264   TTGTGTACGCATCAA             CCCGAAC ATGTG GCTCGCG             TGGCGGACTGGGTGA  44 190
 CLH39_04455  996238 ..  996258 - -15.4  -3.83205   AGCTGTCATAGCAAA            GGGCCCGC AGTTA GCGGGCCC            TTTTACTTTTATTGC  95 50
 CLH39_04445 NONE
 CLH39_04440  992482 ..  992495 -  -3.7  -4.07515   AAAGCAGAACAAGAA               GCCGC CCAT GTGGC                GTGAGATGCTCAACC  60 246
        gloB NONE
 CLH39_04400 NONE
 CLH39_04395  983142 ..  983164 -  -8.5  -5.76949   CAGGGCCAAAAAAAA          GGAACAGTGC AAAA GC-CTGTTCC           TTTTTGTCATCAGGA 100 67
 CLH39_04390 NONE
 CLH39_04385 NONE
 CLH39_04380 NONE
 CLH39_04375 NONE
 CLH39_04370 NONE
 CLH39_04365  976089 ..  976101 - -10.5  -3.41602   TTGATGGCAGGATAA                GCCCC AAC GGGGC                GGTAGTAACAAGGTC  75 337
 CLH39_04360  975097 ..  975109 -  -4.7  -2.78508   CATGCCGCAAAAGAT                GCCCG ATG CGCGC                GGCCTGGCCTATATG  44 388
 CLH39_04345  970513 ..  970538 - -15.5  -4.53034   TGCAGACAAGCAAAA         GGCCGGTTCTC AATT GAAAACCGGCC          TTTCTTATTAAGTAC 100 46
 CLH39_04330  967068 ..  967078 -    -4  -3.54129   GATAGTTTTTTTAAA                 TTCA TGA TGAA                 AGTGATTGGTGCTTT  52 232
 CLH39_04325  965892 ..  965913 - -15.9  -3.84451   GTGGGTAAATTTAAA           CCCTGGACG TAAT CGTCCAGGG            TTTTTTTTGTCGCCG 100 231
 CLH39_04310  964273 ..  964287 -  -6.4  -3.18054   GGGCACAAGGCAACA               GGTCAA CCT CTGACC               CAATCGCAGGTGGGG  53 42
 CLH39_04305 NONE
 CLH39_04300  962588 ..  962613 -  -4.7  -3.34013   CAGCTGGCCAAGGAA         CTGCAGACGCTG GCA CAG-GCCCGCAA         GGTGGAGCTGCCCAC  51 337
        rpoN  960731 ..  960760 -  -2.1  -2.91684   GGAGAATCAGCAAAT       TGCGTACCCGCTCA GTT CAAG-GGGTGCACA       TCCTGCCCGCTGACA  41 7
 CLH39_04285  959081 ..  959096 -  -4.7  -3.06133   GAACGCGGCATTCAA              GGACT TGTGCG AGTCC               TCTGAATTGTGGGAT  48 207
 CLH39_04275 NONE
 CLH39_04270 NONE
        otsB NONE
 CLH39_04260 NONE
 CLH39_04255 NONE
 CLH39_04230 NONE
 CLH39_04225 NONE
 CLH39_04220  946040 ..  946081 -   -16  -3.64703   CCGCCCGGATGCAAA TTGCCCCCAAAATCTGGA TGCGTC TCCAGTTTTTGGGGGCAG  TTCCATTCAGGAAAG 100 46
 CLH39_04210  944363 ..  944383 -  -6.8  -3.13475   TAATTTGATAGGGAA            CTGCCGGA TTGAT TCTGGCAG            CTCCGTAAATTGGAT  56 64
 CLH39_04195  937581 ..  937595 -  -2.8  -2.80958   GAGGTGAAGAAACAG               GCTC GGAGCTG GAGC               GCCTGCTGGGGCTGT  41 390
 CLH39_04185  932249 ..  932284 - -27.8  -5.22039   GGCAAAGGTAAAAAA    CAGCCCCCCGACAGTT GGAT AACTGTCGGGGGGCTG     TTTGCGATTGCGCGT 100 102
 CLH39_04170  928386 ..  928396 -  -4.6  -3.23393   CGGGACCGTAGAAGA                 GGAC TAT GCCC                 GCAAGCAGGGACTTG  49 331
 CLH39_04160 NONE
 CLH39_04155 NONE
        arsC NONE
        arsH  924366 ..  924383 -  -9.1  -3.68351   GGGGTATGAGGTAAA             GCAGGGG CAAG CCCCTAC              CTTGTTTGTATAGCG  73 93
 CLH39_04140 NONE
 CLH39_04135  922217 ..  922233 -  -2.1  -2.78715   AATGGTTTTATTAGA              CCCCCCG AAC CTGAAGG              CAATCTTAAGATACG  39 31
 CLH39_04130  921234 ..  921244 -  -3.2  -2.91735   CCAATATTGGAGATA                 CACG CAG CATG                 GTCACGCACCCGGCA  42 525
 CLH39_04105  917240 ..  917265 - -14.7   -4.3208   CGCCAGAATTCAAAA         GCCCTCGCACA GCAA TGTGCGGGGGC          TTTTTTCTTGGCTGC 100 133
 CLH39_04070 NONE
 CLH39_04065  908992 ..  909026 - -13.6  -4.53303   CAGGTTGATACAAAA     CACACCCCAGACTCTG ATC CAGAGCTTGGGGTGTC     TTGTTTACGGGGTTT 100 320
 CLH39_04025 NONE
 CLH39_04020  901245 ..  901266 -   -13   -4.4634   AAGCTGAATAAGAAA           CGCCGCTG TGATTG CAGCGGCG            TTTTTTTGTCTTGTG 100 47
 CLH39_04005  895802 ..  895812 -  -6.8  -2.95068   CAAGAGATGGACACA                 GCAG GTC CTGC                 CGACCGGTGTGAGGG  54 93
        mgtA  892988 ..  893042 -  -8.5  -2.57211   AGGTTCTTTCAGAAT GTGCGTTAAGGCCTGGGCTCCCGAAA GGAG CTCCGGGAGTCCAGGCCTGT-CAGAC TTAGAACCACTGGCC  58 26
 CLH39_03995 NONE
 CLH39_03990 NONE
 CLH39_03985  889632 ..  889659 - -12.8  -4.90266   GGTACCAAGCAAAAA        GAAGGGCATCTC GAAT GAGATGCCCTTT         ATGTAAGCCTTAGCT 100 48
 CLH39_03965  884159 ..  884176 - -12.7  -6.02546   TCAAACCAAAAAAAA             GCCCTGC ATAA GCAGGGC              TGAAAGGGCAGGTTA 100 70
 CLH39_03960  882801 ..  882834 - -24.1  -3.89614   TGCAAGTGCTACAAA     CCAAAGAGCCACCCT GATC AGGGTGGCTCTTTGG      GGAGAAACATAAAAG 100 51
 CLH39_03955  882139 ..  882155 - -13.7   -5.9873   TCAGCATAAAAAAAA              CCTGGGC TAT GCCCAGG              TTTTCCATGTGTACA 100 52
 CLH39_03950  880778 ..  880794 - -15.1  -4.06419   TTTGTGCATAAAGAA              CCCGGCC ATT GGCCGGG              TTTTTTTACGCCTGT 100 40
         mpl NONE
 CLH39_03900 NONE
 CLH39_03895 NONE
 CLH39_03890 NONE
 CLH39_03885 NONE
        mtgA  867008 ..  867026 -  -3.7  -4.77173   CTCGGACAAAACAAA             GGCCCCC CTACC AGGGGCA             GGGTAATGGTCCAGA  72 398
 CLH39_03870  864859 ..  864869 -  -6.8  -4.62069   CTTTCATTGCAAAAA                 GCGA TAT TCGC                 CGTTGGCCAGTGATT  79 502
 CLH39_03845 NONE
 CLH39_03840 NONE
        hemL  860337 ..  860353 - -10.8  -5.94713   AGCGTATAAAAAAAA              GCGGGC ATATA GCCCGC              TTTTTTGTGTCTGGT 100 45
 CLH39_03825  857328 ..  857379 - -13.3  -4.42748   CGATCCGAAAAACAA TGTTAAAGGCGGCTCAAAGC-AGTA ATGA TACTTGCTTTGAGCCGCCTG-AGCA TATCTTTGGTCGCGC 100 49
 CLH39_03820  856046 ..  856072 - -13.7   -4.8622   GTCCGTAAGGAAAAA         CCGTCTCCACC GATTG GGTGGAGGCGG         TTTTTTTTATCAGGA 100 35
        rplU  854812 ..  854824 -  -4.1  -3.06394   AAGAAAATACCAAAT                TCGCT TTT AGCAA                CAACTTAGGCGTTGA  46 30
 CLH39_03800  854463 ..  854484 -   -13  -5.64274   CCACGCATAAAAAAA           GCCCTGCC TAGGGC GGCAGGGC            TTTTTCGCAGCGAGT 100 59
 CLH39_03795  853053 ..  853094 -  -2.2  -4.74013   TGTAAATAGAGAAAA TGCCAGGAGTAGGGCGGTT GGCTT AACCG-CGTCTTCCGGGCA TTTTGGGGTTCAGTC  65 74
 CLH39_03790  851756 ..  851800 -    -5  -3.84451   CGCCCGAAAGGGAAA GTGTTGCAATCAG-GCGCGCAA AAA CCGCGCGCACTG-TCGCAATTC GATACGTTTTATCCG  61 77
 CLH39_03785  850416 ..  850442 - -14.4  -4.62336   AGGGCAGTTGAAAAA         GGCCCTGTCGGT TAT ACCGGCAGAGCC         TTTGTTCATGCTGTG 100 52
 CLH39_03775  849031 ..  849044 -  -2.3  -3.12407   AAGAGAAGCTTAAGA               TGGGG GCAG CACCA                GATTTGTCGGGTTCA  42 115
 CLH39_03770  848394 ..  848406 -  -4.8  -2.87529   CGATATAGGAAGAAG                TGCC GTGCA GGCA                TTGCACCTGTGGCAC  47 163
 CLH39_03765  846343 ..  846371 -  -8.8  -5.61881   CTCCAAAAAGAAAAA        GCCCCAGGCAGA AAGAA TCCACCCAGGGC        TTTAACCCATCAAGG 100 91
 CLH39_03760  845313 ..  845334 - -10.1  -4.36914   GGCGTGCTGACAAAA           GGCCCGGTT TTTT AACCGGGCT            TTTTTTTGTTTGATC  87 173
 CLH39_03725 NONE
 CLH39_03720 NONE
 CLH39_03715 NONE
        mutY  836232 ..  836242 -  -4.6  -3.54743   CATCAGCAACGATAA                 GCCA GCG CGGC                 CTGCATAGGCGCCGC  54 72
 CLH39_03680 NONE
 CLH39_03675 NONE
 CLH39_03670  827069 ..  827088 - -13.6  -5.55664   TCAGCAGTAAAAAAA            CACCAGGC CTTG GCCTGGTG             TTTTTGTATCCGTTA 100 57
 CLH39_03655 NONE
 CLH39_03650 NONE
         xth  823024 ..  823041 -  -8.4  -4.69664   TACATGATTGAAAAA             GCCAGC TAAGGC GCTGGC              TTTTTCAGGCTGGAT  86 41
 CLH39_03625 NONE
 CLH39_03620  815996 ..  816011 -    -6  -3.38604   GACGAAAACGAGCAA              GCTGCC TTGT GGCTGC               AGGAGTATCAGGAGA  56 351
 CLH39_03600 NONE
 CLH39_03595  810813 ..  810827 -  -5.7  -2.60496   CGTGTTCCGAAATAG               TGACG TGTGG CGTCA               TGCCGGGTCGTTGTC  50 23
 CLH39_03590  809790 ..  809805 -  -3.2  -3.55761   GATCCAGCCGCTAAA              GCAGAA TAGG TTCGGC               CTGACCTACACTAAT  49 323
 CLH39_03555  798099 ..  798111 -  -4.1  -3.04398   GTCCCTGCCTAAAAT                GACAA ACT CTGTC                TATGGTTGATTTTTC  46 364
 CLH39_03530  793929 ..  793950 - -12.3  -3.15544   GCGCAGCTTGAGCAA           GACAGCAGC TTGA GCCGCTGTC            TTGCTCCTTCAGTCT  77 48
 CLH39_03515  787013 ..  787041 - -14.6  -3.90112   GCGCCTTTAAGTAAA        TGGCGCGGCTCT TGTGC AGATCCGCGCCA        AAATCAAGCAAAGCT  93 52
 CLH39_03510  785719 ..  785731 -  -6.3  -3.63515   TTTTACCGTCAATAA                CTTGT TCG ACAAG                CGCTATTACTCCATG  58 131
 CLH39_03445 NONE
        thiD  772800 ..  772816 -  -6.5  -2.54707   GTAGACATAAGACAG              GGGCC TTCAAGC GGCCC              GATCAAACGGCACGT  52 42
 CLH39_03435  772069 ..  772088 -  -5.7  -2.61548   GCCGATTATAAGCCA            GCACATC GATAAA GATGCGC             AGTTGGGCTTAGCAG  50 34
 CLH39_03430 NONE
 CLH39_03425  769599 ..  769614 -  -7.5  -3.61398   GCGCCGTCTGAACAA              GGGGC CGGAGC GCCCC               ATCAATCCCGAGCAG  60 415
        phoB NONE
        phoR NONE
 CLH39_03380 NONE
 CLH39_03375 NONE
 CLH39_03370  759274 ..  759297 - -15.4   -4.6038   CAGACCAAATGAAAA          CACCTCGCTT GGAA AAGCGAGGTG           TTTTTTATTGGGGCT 100 230
 CLH39_03360  757028 ..  757038 -  -6.8  -3.32769   GCTGCAAATTACCAA                 CCCA ATT TGGG                 GAAAATCCACAGCAG  58 8
 CLH39_03355  752886 ..  752908 - -12.7  -4.37886   TCACTCCTTACAAAA           CAGGCCGAC ATAAA GCCGGCCTG           TTCAGGGGGAGTGAT 100 50
 CLH39_03350 NONE
 CLH39_03345 NONE
 CLH39_03340  748761 ..  748771 -  -8.2  -3.17723   GCATCTTTAATTTAA                 CGGC ATA GCCG                 TTTAAACCGGCAGTT  62 175
 CLH39_03335 NONE
 CLH39_03330  745434 ..  745444 -  -6.8  -4.15044   CCTGTGCGCAAGAAA                 GGCA AGC TGCC                 TTTCAATACCGTGGC  71 447
 CLH39_03290 NONE
 CLH39_03285 NONE
        lptC NONE
        lptA  735102 ..  735114 -  -3.3  -3.44146   GGTTGTTAGAAGCAA                CCATG ATT CAAGG                TGGTCCGGGCTATTT  47 35
        lptB NONE
        raiA  733731 ..  733754 -  -6.6  -4.89838   CCAAGAAACACAAAA          CCCCGAACTT CTGA AAGAACGGGG           TTTGTCGGCAGGCGG  82 69
 CLH39_03260 NONE
 CLH39_03255  732156 ..  732174 -  -5.8  -3.54741   CAGCATCGTGGCAAA             GGGCTCCG AGT CGCCGCCC             GGCGGGCAGCGTTTA  59 96
 CLH39_03250 NONE
 CLH39_03245  730171 ..  730183 -  -3.3  -2.71681   GAACTCGCCCAAGGA                CTAGG GCG CCTGG                GTTTAGCGAACGGCA  41 28
 CLH39_03235  728663 ..  728673 -  -2.4  -3.36341   AACAGGGCCGAAATA                 CGGC GTG GCGG                 CTGGGTTTTTTGTAT  46 95
 CLH39_03230 NONE
 CLH39_03225 NONE
 CLH39_03220  726726 ..  726750 - -12.2  -4.65916   CTCACTTGAAGAAAA         CCCGGGT-CCA CTGC TGGTACCCGGG          GTTATGTGGCTGGGG 100 55
        argB  725796 ..  725817 -  -7.2  -2.64616   TGGGCACGGATAGGA           GCGCGCAC GGATTA GTGCGAGC            TGATCATGGTGCCCA  55 15
 CLH39_03210  724993 ..  725015 -    -4  -4.42238   CTACGGCAAGGAAAA           TGGCCGCTAC TCG ATTGCGGACA           TGACCGAATTGAAGT  68 88
 CLH39_03200  722251 ..  722269 -  -5.2  -3.15861   GACGACGTCGAGGAA             CTGCGTTG CGC CACCACAG             GCGTTTTGTCGCCTT  49 248
 CLH39_03175 NONE
        grxC NONE
 CLH39_03165 NONE
 CLH39_03160  715230 ..  715240 -    -4  -2.58231   ACGAGAACGAGCAAG                 CAAT GAC ATTG                 TTTTATTCTGAGTAA  43 102
 CLH39_03155  714186 ..  714226 - -20.7  -3.54543   AGTGATGGCTGCAAA  GAAAACGGCCCTGCAAATC TTG AATTTGCAGGGCCGTTTTT  TTCGATCTTGTCCTT 100 39
 CLH39_03140  711553 ..  711563 -  -4.6  -3.34895   TGGACGCCGAATGAA                 GCCG TGT CAGC                 CTTCTCGACCTTGAA  51 283
 CLH39_03130  709017 ..  709041 -  -7.8  -3.12351   CCCGCGCAGACTGAA         GGCGCGC-CTG CTCA CAGAGCGCGCA          AGCGGTAGCCCACAC  59 12
 CLH39_03125  707657 ..  707675 - -10.3  -2.59431   CGCCCTGAGAACGTA             GTTGGCC GGGGA GGCCAAC             CGGACGAGTTTACCG  68 41
 CLH39_03120  706839 ..  706859 -  -9.7  -2.68279   TAGTTACCAAATGCA            TGGCCAGCA AGC TTCTGGCCA            GCTCTGGCGCTGCGG  65 92
 CLH39_03095  700251 ..  700274 - -13.9  -3.17392   CATGTCGTAAGCGAA          TAGCCCGGC TCGAGG GCCGGGCTA           TTGTCAAATGAACGT  81 55
 CLH39_03090 NONE
 CLH39_03085 NONE
        galE  696934 ..  696977 - -17.6  -2.89569   CTTGCAAATCAATCA TCTGTCAA-CGTGCCATCGCC AAC GGCGATGGCAGGCTTGGCAGA GATCAGGACTGGCCG 100 28
 CLH39_03075  696045 ..  696071 - -17.3  -5.88197   CTAAACATAAAAAAA         GCCCCGCCGAC TGTAT GTCGGCAGGGC         TTTGTACAGCTAAGC 100 49
 CLH39_03070  694903 ..  694926 -  -8.1   -2.6891   TATTAGACGATATGA          CCTTGGCCG TAGCAC CGGCTAAGG           TCGGCTTTCTTAAGC  58 35
 CLH39_02995  680684 ..  680709 - -17.6  -2.57916   GCAAAAACAAAGTAG         CAGGCCCGCC GGGTGT GGCGGGCCTG          TGAAGTCAATCAGGG  95 35
        folB NONE
 CLH39_02985  679073 ..  679130 - -15.8  -3.01966   GGCGCAAAAAAAAGC CCCGATATAAACCTCCACAATCTGGA TGTCAT TCCAGACACTAGCGGTTTATATCGGG GCTTTTTATTGTCTG  90 92
 CLH39_02955  674383 ..  674402 - -13.6  -5.69262   GTAGAAAAACAAAAA            GCCCAGTC AGAT GACTGGGC             TTTTTGCTTGAATTC 100 42
 CLH39_02860  643832 ..  643852 -  -9.7  -5.08255   AGTTCTAAAACAAAA            GCCCTGG TCTGATG CCAGGGC            TTGATATTGCGAAGC 100 55
 CLH39_02840  639015 ..  639027 -  -3.3  -3.54741   GATGAGCCCCTTAAA                CGGTC GCG GAGCG                CATTGAGAACTGCTG  49 8
 CLH39_02835  637160 ..  637177 -  -3.3  -3.06183   TCTACGTTTAGTGAA             CCGTGGC CTTG GCCACAC              CTAATCCGGTTTCCC  44 0
 CLH39_02830  636000 ..  636039 - -15.1  -2.66288   GAAAGAGAAATAGAG  GCTGCCATGTACCCCCG AGGCAA CGGAAGTACATGGCAGG   TACTGCTAGCAGGGT  83 57
 CLH39_02825  634855 ..  634866 -  -4.4  -3.07816   GCGCCATGCAGTTAA                GAGA CGTT TCTC                 TTTGTCAGTAAAGTC  48 82
 CLH39_02820 NONE
 CLH39_02815  633607 ..  633625 - -11.7  -5.14965   AGCCTGATGAAAAAA             GCCCGGT GTCTG ACCGGGC             TTTTTTTCTTTTGCA 100 69
 CLH39_02775  624748 ..  624761 -  -2.3  -2.71791   AGGTCTCCTTTAAAG               GTCAG CCTG CGGAC                AAGTCCACGTTTTTG  39 13
 CLH39_02770  623714 ..  623754 - -10.3  -3.09004   CCAGGCTCAAAAGCA  GTTCCGGCCCCATCACG TTTATCG CGCGATGGGGCCGGTTT  TTGGGTGCAGGATTT  71 49
 CLH39_02735  616366 ..  616377 -  -4.4  -3.76411   TGAAAAGTACTCAAA                TGAC AAAA GTCA                 TGAGTGTGTCGATCG  56 42
 CLH39_02730  615532 ..  615547 -  -3.3  -2.52464   GGCGTGTCTAATTGA              TCAAG GACAAT CTTGA               TTCTATTGAGGTTTT  40 110
 CLH39_02725  614771 ..  614796 -  -7.5  -3.57144   CGCTCCACGGCCAAA         CGTCGG-GGCAA GAC CTGCCACCGTCG         GGCCGTGTCAGACAC  64 33
        fdnG NONE
        fdxH NONE
 CLH39_02710  610695 ..  610726 - -16.7  -4.17762   GACTCCTGAAAACAA      GGCTGCCATGC-CC GAAAT GGTGCATGGCAGCC      GGGTTGCTTATGTAC 100 52
        fdhE NONE
 CLH39_02700 NONE
        selB  606247 ..  606268 - -10.1  -3.01712   TGCTTTCCTTCAAGA           GGCCCTATC ATAC GTTAGGGCC            GATGACGCTTCAACG  67 84
 CLH39_02690 NONE
 CLH39_02680  602724 ..  602753 - -16.5  -3.37533   GGGTAAAACGATCAA       TCCTCCGGACTCC TGCT GGAGTCCGGAGTA        GAGCGTGGGGCATTA 100 38
 CLH39_02675 NONE
 CLH39_02670 NONE
 CLH39_02665  599174 ..  599186 -  -3.3  -3.83026   TTGTGTCAGAGCAAA                GACAG ATT CTGAC                AAGAGTGGATGTGGG  54 110
 CLH39_02660 NONE
        nosZ NONE
 CLH39_02650 NONE
 CLH39_02645 NONE
 CLH39_02640 NONE
 CLH39_02635  591258 ..  591269 -  -5.8   -3.3879   AAGTCATGGCAAATA                CCTG GGAT CAGG                 AAGATAAGCGTTTCA  57 38
 CLH39_02630 NONE
 CLH39_02625 NONE
 CLH39_02620 NONE
 CLH39_02615  587671 ..  587690 -  -9.2  -3.67775   AGGGGCAGGCAAGAA            CGCCGCGT CGGG ATGCGGCG             ATTCATGATCTGGCA  72 100
 CLH39_02520  554286 ..  554314 - -17.5  -5.24129   CCGGGCGATAAAAAA        CCGGCCTGTCC CATTCAT GGACAGGCCGG        TTTCAAGACAAGTTG 100 51
 CLH39_02510 NONE
 CLH39_02505  550746 ..  550758 -  -4.8  -3.72695   AGTGCGCTCAGGAAA                GACG GCCAG CGTC                AGTCACGAGTTCAAA  56 146
 CLH39_02470 NONE
 CLH39_02465  540180 ..  540195 -  -4.6  -3.78775   CGCTGGATGATCAAA              CTCAGG TCAG CCTGGG               CCGCAGTTGTTCGGG  56 381
 CLH39_02380 NONE
 CLH39_02375 NONE
 CLH39_02370 NONE
 CLH39_02365 NONE
        mlaD NONE
 CLH39_02355 NONE
 CLH39_02350  515195 ..  515220 - -15.5  -3.90112   TCTTTGTTAACTAAA         CAGGCCTACGC ATGG GCGTAGACCTG          TTTGGGGGTGATCAG 100 117
 CLH39_02345  514228 ..  514250 -  -9.8   -2.8478   AGCAGCGTAGGAAAG           CCCGAGCCCA TCT TGGGCTGAGG           GGGCAGGCTCAGGGT  65 109
 CLH39_02340 NONE
 CLH39_02335 NONE
        murA NONE
 CLH39_02325  511232 ..  511244 -  -6.2  -4.18018   TTCGCTTAGGCAAAA                GGCG GTCTA CGCC                TTTTGCGCAAGCAGG  68 82
        hisD  509846 ..  509858 -  -3.3  -2.64616   GCGGTACGCATATCA                GTGCC GGC GGCAA                GGCCGGTATCAGGAT  40 34
 CLH39_02315 NONE
 CLH39_02310 NONE
        hisA NONE
 CLH39_02300 NONE
 CLH39_02295 NONE
 CLH39_02290  506161 ..  506179 - -13.2  -3.05715   AACCTCGGTAGCGAA             GCACTTGC TGG GCAAGTGC             CAAAAATCTAGGTAT  81 72
 CLH39_02285 NONE
 CLH39_02280 NONE
        tatB NONE
        tatC  504151 ..  504193 - -12.1  -5.81412   GGTATCTAAAAAAAA TGGCTCTCTGGGC-TACTCC TTTT GGAGCAAGGCAAGAGAGCCA TTTTGGGTCTGCACG 100 79
 CLH39_02260  501874 ..  501901 -    -9  -2.66272   GTTTATGTAAACCCA        CCGGCAGGGTCA AGTT TGCCCGCGCCGG         ATGCCTGATTTTAGC  61 118
        petA NONE
 CLH39_02245 NONE
 CLH39_02240  498232 ..  498260 - -13.1  -5.29445   TTTTAACAATAAAAA        GCCGGGCAGGC TAGTTAG GCCTGCCCGTC        TAGCATAGCGTTTTA 100 38
 CLH39_02235 NONE
 CLH39_02230  497061 ..  497082 - -14.5  -4.50159   TGGAACCCAAATAAA           TAGAGCCCC ATGC GGGGCTCTA            TTTTTGTCTGCGTCG 100 49
 CLH39_02210  493714 ..  493747 - -21.3  -4.95155   CCGACAGCAGAAAAA     CAAAACGCCAAGCTT TCAA AAGCTTGGCGTTTTG      TTTTATTCGTGGTGC 100 35
        kynA NONE
 CLH39_02140 NONE
 CLH39_02135  480526 ..  480547 -  -2.2  -2.52543   ATGTGCTGCAATTTA           TCCCGC-GC TTTGT GCTGGGGGA           TGACACCGGCTTGCC  38 135
 CLH39_02120  477076 ..  477092 - -10.1  -2.66964   TCATCCACCACATGA              GCCCGCT GAA AGCAGGC              TACCTGACGGCCTTG  62 520
 CLH39_02105 NONE
 CLH39_02070  463830 ..  463846 -  -2.1  -4.84017   AAGTCGCGAGAAAAA              CGGGACG CGA CTTGCCG              TCCTTATTGTTACTG  68 76
 CLH39_02065  461971 ..  462000 - -14.5  -5.24531   AGCCGCCACAAAAAA       GCCTGAATCTGACT TGA AG-CAGATTCAGGC       TTTTTCTACGGGAAC 100 135
 CLH39_02030  456433 ..  456452 -   -15   -4.4891   CCCAGGACTACAAAA            CGCCCTGC ATAT GCAGGGCG             TTTTTCTTTGTGCCT 100 55
 CLH39_01930 NONE
 CLH39_01925 NONE
 CLH39_01920  429250 ..  429273 -  -2.4  -4.08064   AAGGGCGCGCGAAAA          CTACCGCTATG TTA CAC-GCAGCAG          AATTACTGCCGTATT  56 158
        rfbB NONE
 CLH39_01905  425212 ..  425224 -  -3.3   -3.9941   GTTTCCATAACTAAA                CAGGC TAG GCCTT                AGTTCCGTCCATAGT  56 24
 CLH39_01900  423734 ..  423745 -  -5.8  -4.18762   AATTTGTACTTAAAA                GGCA GTGA TGCC                 TTAAAGGCCGAGCTA  66 324
 CLH39_01885  419797 ..  419815 -  -7.3  -2.64973   AGCAATCCGACAGCA             GCGCGGC AACAG GCAGCGC             TGGCACATCGCTGGG  50 304
        coxB NONE
        ctaD  412331 ..  412370 -  -4.8  -3.85817   ACTGCCTTTTAGAAA  GGTCCAGGCCATG-ACGGC AAT GACGAACACGGCCAGGAGC  AATCCCAGACGGCGG  59 84
 CLH39_01850 NONE
 CLH39_01845  411110 ..  411135 - -16.2   -4.8622   GGCTTGAAGGAAAAA         TCCAGGCCCG AAGACA CGGGCCTGGA          GCATGAATCGCTAGA 100 36
 CLH39_01835 NONE
 CLH39_01830 NONE
 CLH39_01825 NONE
 CLH39_01820  407506 ..  407525 - -10.7  -5.96219   CAGGCATAAAAAAAA            GCGAGCC GATCAT GGCTCGC             TTTTTTATTGGGCGT 100 43
 CLH39_01810  404125 ..  404148 -    -3  -4.67256   CAACAAAGGAGAAAA          GGCGTGGCGGC AGA GCCGA-ACGCG          GGGAATCAGACAGGA  66 31
 CLH39_01805  401574 ..  401601 -    -4  -3.61517   AGCGGCCTGGAAGAA        GCGATCGACACGC TGG ACGAG-CGTTCGC        AGCGCATTGTGCGCG  51 428
 CLH39_01745 NONE
 CLH39_01740 NONE
 CLH39_01735  385669 ..  385711 -  -7.7   -3.8505   AGCAAGATCATCAAA TCGCTACGCGGCGACCTGGAG GCG CTCCAGGAGGCAG-G-AGCGA TCGGCAAGGTGACGA  68 279
        hutC  380573 ..  380584 -  -4.4  -3.64703   CGTTTGGGAGTCAAA                CTCT AGGC AGAG                 CAAATTTACGGCCTA  54 38
 CLH39_01700  378791 ..  378817 - -16.6  -3.32294   GCAAACGGCCTAGAA         GACACCGCGTGC GCT GCACGCGATGCC         CAAGGTGAACGGGCC 100 124
 CLH39_01690  375722 ..  375736 -  -4.2  -2.72344   TGCCACGCTGAACTA               CGCC ATGGTGG GGCG               CTGGGCCGGGCATTT  43 515
 CLH39_01680  374873 ..  374901 - -14.7  -2.75647   TTGGAAGTACAGAAC        GCCGCAACAAG ACCAGAG CTTGTTGCGGC        TTACTCAGTTGCTGA  84 181
 CLH39_01675  373471 ..  373495 - -11.6  -3.61715   TATTGTCCGTAATAA          CAGTCCTTAA ATTGA TTAAGGACTG          TTATTACGGACATTT  79 137
 CLH39_01670 NONE
 CLH39_01665  371163 ..  371175 -  -4.7  -3.24924   TCTGCAGCCACAAGA                CCGGG CCG CCTGG                GAGTCTCTGTACAGA  49 497
 CLH39_01645  368038 ..  368051 -  -3.7  -4.15222   ATCTGGCGGAAGAAA               CGGGC TTGA GTCCG                GACTTCAATTGCCGG  62 335
 CLH39_01630  364541 ..  364576 - -10.4   -3.5891   CCGCAGAATTAAAGA    GTGTGTTTATGGCCCC TTCG GGGGCGGTAAACACGC     TTTTTTTAATGCTGA  77 298
 CLH39_01620  361645 ..  361661 -  -4.4  -3.14848   TCCTGCTACGAAAAC              CTGACC CGCAT GATCAG              CCAAAGCAGTGACTT  47 455
 CLH39_01575  355400 ..  355413 -  -3.1  -3.14132   GTGTGCCGGGATGAA               CCTGA CCTG TCAGA                GCATGCCATTTACTT  43 170
 CLH39_01540  347712 ..  347740 -  -4.5  -2.70932   TTTGCGGCCTAAGCA        TCCTCATCACACG CTG CGGGCGATCAAGA        CCACGGCGCTTAGCG  44 3
 CLH39_01535  346895 ..  346906 -  -7.2  -2.62184   GCGGCCTTGAGAGCA                GGCC GCCC GGCC                 TGATCAGGTTTTCTC  55 29
 CLH39_01510  341997 ..  342015 - -11.7  -5.40004   GATGAAATGAAAAAA             GGCCGAC ATGCA GTCGGCC             TTTTTGTTTCAGAAC 100 34
 CLH39_01485 NONE
 CLH39_01480 NONE
 CLH39_01475  334691 ..  334719 - -13.9  -4.87626   CGGCAATACTAAAAA        CCCCCGGCGAATT TAA AATTCACCGGGGT        TTTTTATGCATCTCT 100 96
        uvrA  329536 ..  329558 -    -7  -2.94912   CTTTTAAGGGAGACA           GCCTTTAGCG CTG CAATAAAGGC           TTCAGATAGCGCCCG  54 7
 CLH39_01440  323969 ..  323985 - -15.1  -5.75599   CAAAGCATAAAAAAA              CGCCGGC TAG GCCGGCG              TTTGGGTACTGGATT 100 40
 CLH39_01435  323769 ..  323781 -  -9.1  -2.73441   GAGCAGGGCGGAAAT                CAGCG CGG CGCTG                TTTGGGCGTCCGCTG  62 12
        lysA  322347 ..  322393 - -29.6   -3.1211   TAGGACAGGACGCAA CAGGCCGGGACTGCGATGCC TGCTGAT GGCAGCGCAGTCCCGGCCTG TTTTACGGTCAGATT 100 90
 CLH39_01425  319100 ..  319118 -    -3  -2.91681   CTCCAACTTTAGATA             CGCGCC TGCACTT GGAGCG             GTAGCAGATATGAAG  42 253
 CLH39_01405 NONE
 CLH39_01400  312273 ..  312304 - -16.1  -3.58726   GTCGCGTACACACAA      CAAAAAACGCAGC TCACGG GCTGCGTTTTTTG       CGTTCTGATTGATGT 100 44
 CLH39_01240  269089 ..  269105 -  -2.2  -2.80816   TGCGCAGTTAGTACA              GTAGGG GTTCA CCCTAG              CCCCGCAAAGCGGGG  39 54
 CLH39_01235  268195 ..  268217 -  -4.8  -5.03409   TCAGAAAAAAAAGAA           GAAGGCCC CCACGCT GCGCCTTC           GGCTTGTTGCCCCCG  76 182
 CLH39_01230 NONE
 CLH39_01225 NONE
 CLH39_01220 NONE
 CLH39_01215 NONE
 CLH39_01210  260587 ..  260598 -  -2.2  -2.60496   GCGGGGGGTAAACAT                GAAG CGGT CCTC                 CGGCAAATTAGCGTG  39 33
 CLH39_01205 NONE
 CLH39_01200  258278 ..  258291 -  -9.5   -4.8622   CCGGTTAATGAAAAA               GGGGC ATAA GCCCC                TTTCATCTTGGTCTA 100 60
 CLH39_01195 NONE
 CLH39_01190 NONE
        cobA  253007 ..  253035 - -17.6  -5.59879   CAGAAAGATAAAAAA        GGCCCTCAACAT TTGAG ATGTTGAGGGCC        TTTTTAGATTCAGTT 100 152
 CLH39_01155  246948 ..  246971 -   -11  -4.62069   CTGGTAGGTCAAAAA          CCCCGATCTG TTTA CAGATTGGGG           TTTTTTTATGCTTGT 100 314
 CLH39_01065 NONE
 CLH39_01060 NONE
 CLH39_01055 NONE
 CLH39_01050 NONE
 CLH39_01045  228213 ..  228229 -  -2.2  -3.01288   TAACAAAACAAAGAC              CCGG ACTATTTTA CCGG              CTTATATCGCCGCGT  41 155
         azu  227592 ..  227618 - -18.8  -5.81412   TCGAGCTAAAAAAAA         TCCCCACATGGC CAG GCCACGTGGGGA         TTTTTTATGGCCGTC 100 63
 CLH39_00970  213198 ..  213217 -  -3.4  -4.07568   TGCTTTGCTGGAAAA            GCAGGGGC TGTC GTCCTTGC             TGGAGCAAACGGACG  56 47
 CLH39_00945  206765 ..  206778 -  -9.5  -5.74122   CAGGACACAAAAAAA               CCGCC TGAC GGCGG                TTTGATGAAGGTAGG 100 52
 CLH39_00935  201715 ..  201732 -  -2.5   -4.5954   CCATACGACATAAAA             GCGCGGG CAAG CCCGTCC              CATCAGACGTAGACA  65 28
 CLH39_00930 NONE
         psd  200620 ..  200641 - -10.9   -5.9873   CGACGACAAAAAAAA           CCTGTGTCC ACTT GAACACAGG            TTTTATTCATTAGAA 100 49
 CLH39_00920  199340 ..  199368 - -11.1  -5.17353   ACAGGGATTAAAAAA        CCCCATCACATGA TTT TCATATTATGGGG        TTTTTATTTATTCTT 100 123
 CLH39_00910  197169 ..  197179 -  -2.4  -3.19371   AGGCATGGAATTCAA                 GGTG AGT CCCC                 AGTATAGAAAAATAG  44 261
 CLH39_00905  196312 ..  196334 - -13.4  -3.13522   AGGGCGTTACCAATA           CAGGCACGGC ACC GCCATGCCCG           TTTAAACCGCTTGGC  81 47
 CLH39_00900  195132 ..  195144 -  -4.1  -5.60993   CTCGCCACAAAAAAA                CTGCA GAT TACAG                GTAAAAAAAGCCGGA  88 54
 CLH39_00895  194124 ..  194156 - -16.3  -3.56594   CTAAACGCTCCGAAA      CGTAAGAGGCCGACT GTT AGTCGGCCTCATTCG      GAGATACAGGAGCGG 100 9
 CLH39_00885  190023 ..  190075 -  -3.5   -5.1287   CCCAGAGTCAAAAAA GGGCGCAGTCAATGGTTCATACAGGC TTGC GCCCGAACAAACCACC--C-GCGCCC CCAAGGACTCCCGAA  78 58
        argE  174288 ..  174298 -  -2.4  -2.65808   ATTTTTAAGAAGCTA                 CGGC CTG GCTG                 CGAATCAGAGCGCGC  39 4
 CLH39_00805 NONE
 CLH39_00800 NONE
 CLH39_00795  171239 ..  171254 -  -6.1  -4.38273   ACACAGCACAACAAA              GCGTC TGCACC GACGC               CTTGCGTTTTACTGC  71 34
 CLH39_00790  170723 ..  170740 -  -6.3  -5.10665   AGCCAATAAATAAAA             TATAGGG AATT CCCTACA              GACTTAAAATAATTT  86 149
 CLH39_00785 NONE
 CLH39_00780 NONE
 CLH39_00775 NONE
 CLH39_00770 NONE
 CLH39_00765 NONE
 CLH39_00760 NONE
 CLH39_00755 NONE
 CLH39_00750 NONE
 CLH39_00745 NONE
 CLH39_00740  161444 ..  161454 -  -6.8  -3.10164   TTATCTACCAGCTAA                 GCCA GAT TGGC                 GACGCGACGCCGCGC  56 11
 CLH39_00735  160591 ..  160611 - -15.5  -4.72863   TTAAATAAACGAAAA            CGCCAGCAA AAT TTGCTGGCG            TCGGCCCTGATGGCG 100 110
 CLH39_00700 NONE
 CLH39_00695  152971 ..  152988 -  -4.9  -3.36073   CATACCGGTCAAACA             TGCTGCAT TAA ATGC-GCA             TCGGCATGACCACGT  52 15
        gyrB  150323 ..  150350 -  -9.8  -5.55664   TCATCACCAAAAAAA        TGAGCCCCAGCA AGAA CGCCGGAGCCCA         TTTTTCTTATCCGCA 100 123
 CLH39_00685  149188 ..  149214 - -13.1  -5.28176   TGCAGGCACAAAAAA         GCGCTCAAACA CATTT CGTTTGAGCGC         TTTTTTTGACTGACT 100 117
 CLH39_00675 NONE
 CLH39_00670 NONE
 CLH39_00665 NONE
 CLH39_00660  144454 ..  144470 - -15.1  -5.64274   GCAGGCACAAAAAAA              CCGGGCC AAA GGCCCGG              TAAAAGTGGTGTGTC 100 61
 CLH39_00655  144032 ..  144043 -  -5.8  -3.30441   CATGATCCGCCAGAA                GCCT ACAA AGGC                 TGCACCGCAAGACGC  55 16
 CLH39_00650  143368 ..  143393 -  -5.3  -3.62859   ACCACAAGTTCTAAA         GCGGGACGCCCC TTC GGGG-GCCACAC         CCTGACTCGCTGTAC  56 143
 CLH39_00625 NONE
 CLH39_00620 NONE
 CLH39_00615 NONE
 CLH39_00610  136180 ..  136223 -  -3.8  -4.83518   AAGAACAATACAAAA CCAAGGACAGAGCGCCCCTGT AAA AAAGGGACGTTC-GTCATTGC ACTGTACGTCCTTTG  72 54
 CLH39_00570  127200 ..  127227 -   -12  -2.66451   ATTTATGCAAAGTCA        GCAGCTTGCCCC CAAC GGATCAAGCTGC         TTGCGGGACGGATCA  73 38
 CLH39_00565  125956 ..  125977 -  -6.5  -4.08394   AGAGGCGCTGGAAAA           GCTGGGCAA GGCC CTGACCAGC            GGGGATCCGGAGTAT  66 131
        argE  121404 ..  121423 -  -7.8  -4.17316   ATTCCTTCAAAATAA            GACAGGCC CCAA GACCTGCC             TGAAACCATCCCGCC  74 41
 CLH39_00540  120137 ..  120161 - -12.9  -6.06529   CAGACACAAAAAAAA          GCCGCTTTCCA TAA CAGAAAGCGGC          CTCGAGGTCCTGCCA 100 51
 CLH39_00535  118696 ..  118709 -  -2.3  -4.90778   CGTACTGAAACAAAA               CCGGT AATT AGCGG                GCGTCGAACTTGTTG  70 19
 CLH39_00530 NONE
 CLH39_00525 NONE
 CLH39_00520 NONE
 CLH39_00515  113677 ..  113688 -  -2.2  -4.24623   TCAAACAGAGATAAA                GACG TCAG CATC                 AGACATACCTTTGTC  57 24
 CLH39_00510 NONE
 CLH39_00505 NONE
 CLH39_00500  111733 ..  111748 -    -4  -4.58685   AAAGGTTCGGAAAAA              TCAGCTC TGC GAGC-GA              TGGCTCCCATCACTG  66 10
 CLH39_00495  110817 ..  110845 - -13.2    -3.002   ACCACGGTATAGATA       GCCCCTTGTCCGC GAAC ACGG-CAAGGGGC        ACGCAACACGCTATT  80 55
 CLH39_00475  107136 ..  107149 -  -6.7  -3.90048   CTGCCTGTAAAAAGA               GAGCA CTCA TGCTC                AACGGACGCGTTTAC  67 24
 CLH39_00470  105704 ..  105719 - -10.4   -4.0896   AAAGGCTTTTGAAAA              GGACGC TTAG GCGTCC               TTTTTTTCGGCTTTG  84 196
 CLH39_00450  101025 ..  101062 -  -9.2  -3.14344   GAGTGCCCCCAGGAA   CCAAGCCGCG-CCTGAT CAAGC ATCAGTTCGCGGCTTTG   TCTTGGCCTGTTTCC  65 3
 CLH39_00440 NONE
 CLH39_00435   97237 ..   97274 - -18.5  -3.12142   TCCAGATTCAAGAGA   CACCACACACGCCTCAC CTGA ACGGGGCGTGTGTGGTG    TTTTTTTATCCTTTC 100 119
 CLH39_00425 NONE
 CLH39_00420   92724 ..   92741 -    -4  -3.53444   CGAGGCCGCCCGAAA             GCGGCC CGGTGT GGCCCC              TTACACCAGTGCGTA  52 26
 CLH39_00415   91983 ..   91993 -  -3.2  -2.57344   CAGGCCTGGCAGAAT                 GCAC CTT ATGC                 TAGCTGGCCGCGCTT  40 25
 CLH39_00410   91349 ..   91360 -  -4.4  -3.07013   TATGGTCTGAATACA                TGCT TCTG AGCA                 TAGTATATTTATTAA  48 119
 CLH39_00405 NONE
 CLH39_00400   87791 ..   87822 -   -10   -4.1552   GATGGCTTGAATAAA      TCGGGTCGGCCCGC CTTG GCAGGCCGTCCAAA       TAAGTTAAACAAGTA  83 44
 CLH39_00395 NONE
 CLH39_00390   85736 ..   85765 -    -7  -5.02476   AGACCCGTCAAAAAA       CGGCCCCAATCC ACTGGG GGAAAGGGACCG        TCTTGAACCTTCTTA  86 38
 CLH39_00385   84696 ..   84722 - -10.2  -3.80877   CTAGGTGAGAAAACA         GCAGAACCGCAT GGT ACACAGTTCTGC         CACTTCCCCACCGTT  80 47
 CLH39_00380 NONE
 CLH39_00375 NONE
 CLH39_00370 NONE
 CLH39_00365 NONE
 CLH39_00360 NONE
 CLH39_00355   78367 ..   78381 -    -7  -2.66272   CTCCAGGCAAATTCA               GGGCGC AGG GCGCGC               CACCAGCACGGCTAC  52 8
 CLH39_00350   77510 ..   77531 - -12.3  -5.46698   TCCAAAAGCAAAAAA           CCCCCTTGG TTTT CCAAGAGGG            TTTTATATGCCGTCA 100 105
 CLH39_00340 NONE
 CLH39_00335   74965 ..   74975 -  -6.8  -2.73483   ATGGGACGTTAAGCA                 GGTC CTG GACC                 TGCACACCCGGCGGC  53 80
 CLH39_00330   73795 ..   73820 - -16.9   -5.9667   AAAAACATAAAAAAA         CCCCGCTCTCC CAAA GGAAAGCGGGG          CCAAGACTGTAGTGT 100 56
 CLH39_00320 NONE
 CLH39_00315   69992 ..   70013 - -13.7  -3.07816   TTCTGAGGGAGCTAA           GGACGCCAC TGCG GCGGCGTCC            TGGTTTTTCTTATTC  81 35
 CLH39_00310 NONE
 CLH39_00305 NONE
 CLH39_00300   66448 ..   66484 - -13.6  -2.72049   GAGACCCTGCAACGA    GTGCGCGGCGGCCAGC ACTAA GCTGACCGCCTCACCC    GTCCTCTCACCCCTT  79 32
 CLH39_00290   64631 ..   64648 - -14.1  -4.15066   CAGGCATAAAGCAAA             CGGCGCC TTTC GGCGCCG              TTATGCATTTGCATC 100 89
 CLH39_00280   63349 ..   63359 -  -6.8  -3.87641   AACACTCTCTAGAAA                 CAGG TCC CCTG                 TAACGGACACCTAAG  67 80
 CLH39_00275   62686 ..   62720 - -14.2  -5.79595   GGCTAAAACAAAAAA     CGCGGTGTTTGCTGCC AGG GGCAGTGCACACCGCG     TTTTTTAATAAAGCC 100 75
 CLH39_00230   50784 ..   50799 - -10.4  -5.22768   AGAAGAAAAAATAAA              CCAGCC CGGC GGCTGG               ACAATTAATTCTAAC 100 243
 CLH39_00225   49514 ..   49529 - -10.4   -5.9663   AAAGACCAAAAAAAA              TCCGCC CGAA GGCGGA               TTTCTTTACAGCAAG 100 49
 CLH39_00210 NONE
 CLH39_00205 NONE
 CLH39_00200 NONE
 CLH39_00195 NONE
 CLH39_00190 NONE
 CLH39_00185   42487 ..   42498 -  -3.6  -3.96327   AGGTGGCATCACAAA                GCAC CATG GCGC                 GGCGGGCGCACGCCA  57 7
 CLH39_00180 NONE
 CLH39_00175 NONE
 CLH39_00170 NONE
 CLH39_00165   37750 ..   37782 - -17.9  -3.16564   CTCCGAGCGTACCAA      GCAAAAGGGCACGAA TGA TTCGTGCACTTTTGC      TTCCAAGAGGCGGCC 100 61
 CLH39_00145   33957 ..   33977 - -13.3   -3.3482   CAACGCTTCAAGGAA            CTGCCCCAT CAA ACGGGGCAG            ACACGGCACACAAGC  83 52
 CLH39_00125   29894 ..   29907 -  -4.5  -3.87815   GTGCAGTTCGACAAA               GTCCC GCCC GAGAC                CCTGGCACAAATTGT  59 508
 CLH39_00100   22815 ..   22841 - -14.5  -3.45242   TCAAAGAAACCAAGA        GGCCGTGCT-CC ACTT GGTAGCACGGCC         TGCTCTCAAACCACT  88 113
 CLH39_00095   22055 ..   22076 - -14.4  -3.81137   TTTGAAAGACTGAAA           GCCGGGCC TGAATG GGCCCGGC            TTTTTTTATTGTCTG  93 273
        ilvB   16152 ..   16165 -  -2.3  -2.88544   TCGGACTGGGACATA               GGGGT TTTT ACGCC                TGTGTCCCAGCCGGG  41 45
 CLH39_00065   15089 ..   15105 -  -5.1  -3.20804   AGAACGGACAACAGA              GCTTTCA TGA TGAATGC              CGTTTACTGAGTCTG  53 29
 CLH39_00060   14539 ..   14555 - -12.3  -3.34398   TCTCCGGTCTAAACA              GATGCCC GTA GGGCATC              GAGAGTTCGGTGGTG  80 69
 CLH39_00055   13230 ..   13240 -  -3.2  -2.96695   GCGCTCAGGAAAGCA                 GACG ATT CATC                 AACGGTACACCAGGT  42 24
 CLH39_00050   12314 ..   12332 -    -8  -3.18264   TTGCGCATCCAGGAA             CGCTGGAC TCT GCCCGGCG             TGCATCAACCCATCA  59 468
