locus-tag class description MID00_00010 PF01037 Lrp/AsnC ligand binding domain MID00_00010 PF13404 AsnC-type helix-turn-helix domain MID00_00025 PF00990 Diguanylate cyclase, GGDEF domain MID00_00075 PF00959 Phage lysozyme MID00_00085 PF00589 Phage integrase family MID00_00190 PF00717 Peptidase S24-like MID00_00190 PF01726 LexA DNA binding domain MID00_00200 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system MID00_00205 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system MID00_00220 PF01435 Peptidase family M48 MID00_00230 PF00583 Acetyltransferase (GNAT) family MID00_00240 PF00893 Small Multidrug Resistance protein MID00_00245 PF02580 D-Tyr-tRNA(Tyr) deacylase MID00_00250 PF06965 Na+/H+ antiporter 1 MID00_00260 PF03448 MgtE intracellular N domain MID00_00260 PF01769 Divalent cation transporter MID00_00260 PF00571 CBS domain MID00_00265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_00265 PF00072 Response regulator receiver domain MID00_00265 PF00512 His Kinase A (phospho-acceptor) domain MID00_00265 PF01627 Hpt domain MID00_00270 PF00072 Response regulator receiver domain MID00_00275 PF01381 Helix-turn-helix MID00_00290 PF08946 Osmosensory transporter coiled coil MID00_00290 PF00083 Sugar (and other) transporter MID00_00295 PF00924 Mechanosensitive ion channel MID00_00295 PF12795 Mechanosensitive ion channel porin domain MID00_00295 PF12794 Mechanosensitive ion channel inner membrane domain 1 MID00_00300 PF00924 Mechanosensitive ion channel MID00_00300 PF12795 Mechanosensitive ion channel porin domain MID00_00300 PF12794 Mechanosensitive ion channel inner membrane domain 1 MID00_00305 PF01593 Flavin containing amine oxidoreductase MID00_00320 PF00866 Ring hydroxylating beta subunit MID00_00325 PF00848 Ring hydroxylating alpha subunit (catalytic domain) MID00_00325 PF00355 Rieske [2Fe-2S] domain MID00_00340 PF04303 PrpF protein MID00_00350 PF00694 Aconitase C-terminal domain MID00_00350 PF00330 Aconitase family (aconitate hydratase) MID00_00355 PF00994 Probable molybdopterin binding domain MID00_00355 PF18146 Damage-inducible protein CinA KH domain MID00_00355 PF02464 Competence-damaged protein MID00_00360 PF12802 MarR family MID00_00370 PF01645 Conserved region in glutamate synthase MID00_00385 PF02630 SCO1/SenC MID00_00405 PF00860 Permease family MID00_00410 PF12805 FUSC-like inner membrane protein yccS MID00_00415 PF00529 HlyD membrane-fusion protein of T1SS MID00_00415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID00_00425 PF00999 Sodium/hydrogen exchanger family MID00_00435 PF01914 MarC family integral membrane protein MID00_00450 PF00149 Calcineurin-like phosphoesterase MID00_00455 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID00_00460 PF00034 Cytochrome c MID00_00470 PF00115 Cytochrome C and Quinol oxidase polypeptide I MID00_00475 PF00072 Response regulator receiver domain MID00_00475 PF00486 Transcriptional regulatory protein, C terminal MID00_00480 PF08521 Two-component sensor kinase N-terminal MID00_00480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_00480 PF00512 His Kinase A (phospho-acceptor) domain MID00_00485 PF00313 'Cold-shock' DNA-binding domain MID00_00515 PF10518 TAT (twin-arginine translocation) pathway signal sequence MID00_00515 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding MID00_00515 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID00_00555 PF00230 Major intrinsic protein MID00_00560 PF07007 Lysozyme inhibitor LprI MID00_00565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_00565 PF03466 LysR substrate binding domain MID00_00580 PF00581 Rhodanese-like domain MID00_00585 PF00324 Amino acid permease MID00_00595 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID00_00605 PF03150 Di-haem cytochrome c peroxidase MID00_00610 PF07715 TonB-dependent Receptor Plug Domain MID00_00625 PF08274 PhnA Zinc-Ribbon MID00_00625 PF03831 PhnA domain MID00_00635 PF03466 LysR substrate binding domain MID00_00635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_00645 PF00528 Binding-protein-dependent transport system inner membrane component MID00_00650 PF00005 ABC transporter MID00_00655 PF04069 Substrate binding domain of ABC-type glycine betaine transport system MID00_00695 PF00589 Phage integrase family MID00_00710 PF00034 Cytochrome c MID00_00710 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MID00_00710 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID00_00715 PF00111 2Fe-2S iron-sulfur cluster binding domain MID00_00715 PF01799 [2Fe-2S] binding domain MID00_00725 PF03401 Tripartite tricarboxylate transporter family receptor MID00_00730 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain MID00_00730 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain MID00_00740 PF08447 PAS fold MID00_00740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID00_00745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID00_00745 PF08447 PAS fold MID00_00750 PF04286 Protein of unknown function (DUF445) MID00_00760 PF00669 Bacterial flagellin N-terminal helical region MID00_00760 PF00700 Bacterial flagellin C-terminal helical region MID00_00780 PF04542 Sigma-70 region 2 MID00_00780 PF04545 Sigma-70, region 4 MID00_00780 PF04539 Sigma-70 region 3 MID00_00785 PF03646 FlaG protein MID00_00790 PF07196 Flagellin hook IN motif MID00_00790 PF07195 Flagellar hook-associated protein 2 C-terminus MID00_00790 PF02465 Flagellar hook-associated protein 2 N-terminus MID00_00795 PF02561 Flagellar protein FliS MID00_00810 PF01312 FlhB HrpN YscU SpaS Family MID00_00815 PF02049 Flagellar hook-basal body complex protein FliE MID00_00820 PF01514 Secretory protein of YscJ/FliF family MID00_00820 PF08345 Flagellar M-ring protein C-terminal MID00_00825 PF01706 FliG C-terminal domain MID00_00825 PF14841 FliG middle domain MID00_00825 PF14842 FliG N-terminal domain MID00_00835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MID00_00835 PF18269 T3SS EscN ATPase C-terminal domain MID00_00850 PF03748 Flagellar basal body-associated protein FliL MID00_00855 PF02154 Flagellar motor switch protein FliM MID00_00855 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term MID00_00860 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term MID00_00860 PF16973 Flagellar motor switch protein FliN N-terminal MID00_00865 PF04347 Flagellar biosynthesis protein, FliO MID00_00870 PF00813 FliP family MID00_00875 PF01313 Bacterial export proteins, family 3 MID00_00880 PF01311 Bacterial export proteins, family 1 MID00_00885 PF07733 Bacterial DNA polymerase III alpha NTPase domain MID00_00885 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MID00_00885 PF14579 Helix-hairpin-helix motif MID00_00885 PF02811 PHP domain MID00_00885 PF00929 Exonuclease MID00_00895 PF02203 Tar ligand binding domain homologue MID00_00895 PF00672 HAMP domain MID00_00895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID00_00910 PF00669 Bacterial flagellin N-terminal helical region MID00_00915 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MID00_00915 PF00460 Flagella basal body rod protein MID00_00920 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase MID00_00920 PF10135 Rod binding protein MID00_00925 PF02119 Flagellar P-ring protein MID00_00930 PF02107 Flagellar L-ring protein MID00_00935 PF00460 Flagella basal body rod protein MID00_00935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MID00_00940 PF00460 Flagella basal body rod protein MID00_00940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MID00_00945 PF07559 Flagellar basal body protein FlaE MID00_00945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MID00_00945 PF00460 Flagella basal body rod protein MID00_00950 PF13860 FlgD Ig-like domain MID00_00950 PF13861 FlgD Tudor-like domain MID00_00950 PF03963 Flagellar hook capping protein - N-terminal region MID00_00955 PF00460 Flagella basal body rod protein MID00_00955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MID00_00960 PF00460 Flagella basal body rod protein MID00_00970 PF04316 Anti-sigma-28 factor, FlgM MID00_00980 PF00448 SRP54-type protein, GTPase domain MID00_00985 PF00771 FHIPEP family MID00_00990 PF01312 FlhB HrpN YscU SpaS Family MID00_00995 PF04344 Chemotaxis phosphatase, CheZ MID00_01000 PF00072 Response regulator receiver domain MID00_01005 PF01339 CheB methylesterase MID00_01005 PF00072 Response regulator receiver domain MID00_01010 PF03705 CheR methyltransferase, all-alpha domain MID00_01010 PF01739 CheR methyltransferase, SAM binding domain MID00_01015 PF00672 HAMP domain MID00_01015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID00_01015 PF02203 Tar ligand binding domain homologue MID00_01020 PF01584 CheW-like domain MID00_01025 PF01584 CheW-like domain MID00_01025 PF09078 CheY binding MID00_01025 PF02895 Signal transducing histidine kinase, homodimeric domain MID00_01025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_01025 PF01627 Hpt domain MID00_01030 PF13677 Membrane MotB of proton-channel complex MotA/MotB MID00_01030 PF00691 OmpA family MID00_01035 PF01618 MotA/TolQ/ExbB proton channel family MID00_01040 PF05280 Flagellar transcriptional activator (FlhC) MID00_01045 PF05247 Flagellar transcriptional activator (FlhD) MID00_01050 PF00877 NlpC/P60 family MID00_01055 PF01266 FAD dependent oxidoreductase MID00_01055 PF16901 C-terminal domain of alpha-glycerophosphate oxidase MID00_01060 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MID00_01060 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MID00_01065 PF05154 TM2 domain MID00_01070 PF00884 Sulfatase MID00_01075 PF03781 Sulfatase-modifying factor enzyme 1 MID00_01080 PF00916 Sulfate permease family MID00_01080 PF01740 STAS domain MID00_01085 PF00403 Heavy-metal-associated domain MID00_01090 PF13411 MerR HTH family regulatory protein MID00_01100 PF04143 Sulphur transport MID00_01110 PF00753 Metallo-beta-lactamase superfamily MID00_01115 PF04247 Invasion gene expression up-regulator, SirB MID00_01120 PF03601 Conserved hypothetical protein 698 MID00_01125 PF03466 LysR substrate binding domain MID00_01125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_01135 PF00892 EamA-like transporter family MID00_01145 PF13609 Gram-negative porin MID00_01160 PF02690 Na+/Pi-cotransporter MID00_01165 PF01594 AI-2E family transporter MID00_01190 PF12833 Helix-turn-helix domain MID00_01190 PF02311 AraC-like ligand binding domain MID00_01200 PF00171 Aldehyde dehydrogenase family MID00_01205 PF01494 FAD binding domain MID00_01210 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID00_01220 PF02913 FAD linked oxidases, C-terminal domain MID00_01220 PF01565 FAD binding domain MID00_01225 PF00171 Aldehyde dehydrogenase family MID00_01230 PF07690 Major Facilitator Superfamily MID00_01235 PF03466 LysR substrate binding domain MID00_01235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_01240 PF04303 PrpF protein MID00_01245 PF07690 Major Facilitator Superfamily MID00_01250 PF04909 Amidohydrolase MID00_01255 PF03737 Aldolase/RraA MID00_01260 PF04909 Amidohydrolase MID00_01265 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit MID00_01270 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase MID00_01275 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MID00_01280 PF13183 4Fe-4S dicluster domain MID00_01280 PF02754 Cysteine-rich domain MID00_01285 PF01565 FAD binding domain MID00_01290 PF02913 FAD linked oxidases, C-terminal domain MID00_01290 PF01565 FAD binding domain MID00_01295 PF00392 Bacterial regulatory proteins, gntR family MID00_01295 PF07729 FCD domain MID00_01330 PF00575 S1 RNA binding domain MID00_01330 PF10150 Ribonuclease E/G family MID00_01345 PF00005 ABC transporter MID00_01345 PF00664 ABC transporter transmembrane region MID00_01360 PF03692 Putative zinc- or iron-chelating domain MID00_01370 PF00534 Glycosyl transferases group 1 MID00_01370 PF13439 Glycosyltransferase Family 4 MID00_01380 PF00535 Glycosyl transferase family 2 MID00_01385 PF01522 Polysaccharide deacetylase MID00_01390 PF00534 Glycosyl transferases group 1 MID00_01390 PF13439 Glycosyltransferase Family 4 MID00_01395 PF07733 Bacterial DNA polymerase III alpha NTPase domain MID00_01395 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MID00_01395 PF14579 Helix-hairpin-helix motif MID00_01395 PF02811 PHP domain MID00_01395 PF01336 OB-fold nucleic acid binding domain MID00_01400 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MID00_01400 PF00270 DEAD/DEAH box helicase MID00_01400 PF11898 Domain of unknown function (DUF3418) MID00_01400 PF04408 Helicase associated domain (HA2) MID00_01400 PF00271 Helicase conserved C-terminal domain MID00_01405 PF00696 Amino acid kinase family MID00_01405 PF00583 Acetyltransferase (GNAT) family MID00_01410 PF04362 Bacterial Fe(2+) trafficking MID00_01415 PF01590 GAF domain MID00_01415 PF00990 Diguanylate cyclase, GGDEF domain MID00_01415 PF00360 Phytochrome region MID00_01415 PF00563 EAL domain MID00_01420 PF01895 PhoU domain MID00_01425 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) MID00_01430 PF03960 ArsC family MID00_01435 PF00528 Binding-protein-dependent transport system inner membrane component MID00_01440 PF00528 Binding-protein-dependent transport system inner membrane component MID00_01445 PF08402 TOBE domain MID00_01445 PF00005 ABC transporter MID00_01450 PF13416 Bacterial extracellular solute-binding protein MID00_01465 PF18073 Rubredoxin metal binding domain MID00_01475 PF01168 Alanine racemase, N-terminal domain MID00_01475 PF00842 Alanine racemase, C-terminal domain MID00_01490 PF01593 Flavin containing amine oxidoreductase MID00_01495 PF13302 Acetyltransferase (GNAT) domain MID00_01500 PF00291 Pyridoxal-phosphate dependent enzyme MID00_01500 PF14821 Threonine synthase N terminus MID00_01505 PF03447 Homoserine dehydrogenase, NAD binding domain MID00_01505 PF00742 Homoserine dehydrogenase MID00_01505 PF01842 ACT domain MID00_01510 PF00155 Aminotransferase class I and II MID00_01515 PF04430 Protein of unknown function (DUF498/DUF598) MID00_01520 PF00578 AhpC/TSA family MID00_01525 PF02562 PhoH-like protein MID00_01525 PF13638 PIN domain MID00_01530 PF04166 Pyridoxal phosphate biosynthetic protein PdxA MID00_01535 PF13593 SBF-like CPA transporter family (DUF4137) MID00_01540 PF00772 DnaB-like helicase N terminal domain MID00_01540 PF03796 DnaB-like helicase C terminal domain MID00_01545 PF03948 Ribosomal protein L9, C-terminal domain MID00_01545 PF01281 Ribosomal protein L9, N-terminal domain MID00_01550 PF01084 Ribosomal protein S18 MID00_01560 PF01250 Ribosomal protein S6 MID00_01565 PF02649 Type I GTP cyclohydrolase folE2 MID00_01570 PF02780 Transketolase, C-terminal domain MID00_01570 PF02779 Transketolase, pyrimidine binding domain MID00_01570 PF13292 1-deoxy-D-xylulose-5-phosphate synthase MID00_01575 PF00348 Polyprenyl synthetase MID00_01580 PF02609 Exonuclease VII small subunit MID00_01585 PF00581 Rhodanese-like domain MID00_01600 PF01435 Peptidase family M48 MID00_01625 PF02690 Na+/Pi-cotransporter MID00_01630 PF01367 5'-3' exonuclease, C-terminal SAM fold MID00_01630 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MID00_01630 PF00476 DNA polymerase family A MID00_01630 PF01612 3'-5' exonuclease MID00_01635 PF03641 Possible lysine decarboxylase MID00_01640 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID00_01645 PF00528 Binding-protein-dependent transport system inner membrane component MID00_01650 PF00528 Binding-protein-dependent transport system inner membrane component MID00_01660 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID00_01665 PF03144 Elongation factor Tu domain 2 MID00_01665 PF00009 Elongation factor Tu GTP binding domain MID00_01665 PF00679 Elongation factor G C-terminus MID00_01670 PF16198 tRNA pseudouridylate synthase B C-terminal domain MID00_01670 PF01509 TruB family pseudouridylate synthase (N terminal domain) MID00_01675 PF02033 Ribosome-binding factor A MID00_01680 PF11987 Translation-initiation factor 2 MID00_01680 PF04760 Translation initiation factor IF-2, N-terminal region MID00_01680 PF08364 Bacterial translation initiation factor IF-2 associated region MID00_01680 PF00009 Elongation factor Tu GTP binding domain MID00_01685 PF08529 NusA N-terminal domain MID00_01685 PF13184 NusA-like KH domain MID00_01690 PF02576 RimP N-terminal domain MID00_01690 PF17384 RimP C-terminal SH3 domain MID00_01695 PF01479 S4 domain MID00_01695 PF00849 RNA pseudouridylate synthase MID00_01700 PF04079 Segregation and condensation complex subunit ScpB MID00_01740 PF05233 PHB accumulation regulatory domain MID00_01740 PF07879 PHB/PHA accumulation regulator DNA-binding domain MID00_01745 PF00106 short chain dehydrogenase MID00_01750 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus MID00_01755 PF02578 Multi-copper polyphenol oxidoreductase laccase MID00_01760 PF00849 RNA pseudouridylate synthase MID00_01760 PF01479 S4 domain MID00_01765 PF13525 Outer membrane lipoprotein MID00_01770 PF08361 MAATS-type transcriptional repressor, C-terminal region MID00_01770 PF00440 Bacterial regulatory proteins, tetR family MID00_01775 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID00_01775 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MID00_01785 PF03480 Bacterial extracellular solute-binding protein, family 7 MID00_01795 PF06249 Ethanolamine utilisation protein EutQ MID00_01805 PF04851 Type III restriction enzyme, res subunit MID00_01805 PF13307 Helicase C-terminal domain MID00_01810 PF00575 S1 RNA binding domain MID00_01810 PF17674 HHH domain MID00_01810 PF09371 Tex-like protein N-terminal domain MID00_01810 PF16921 Tex protein YqgF-like domain MID00_01825 PF00579 tRNA synthetases class I (W and Y) MID00_01830 PF03969 AFG1-like ATPase MID00_01835 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID00_01835 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MID00_01840 PF02817 e3 binding domain MID00_01840 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MID00_01840 PF00364 Biotin-requiring enzyme MID00_01845 PF02779 Transketolase, pyrimidine binding domain MID00_01845 PF16870 2-oxoglutarate dehydrogenase C-terminal MID00_01845 PF16078 2-oxoglutarate dehydrogenase N-terminus MID00_01845 PF00676 Dehydrogenase E1 component MID00_01850 PF01515 Phosphate acetyl/butaryl transferase MID00_01850 PF03949 Malic enzyme, NAD binding domain MID00_01850 PF00390 Malic enzyme, N-terminal domain MID00_01860 PF00654 Voltage gated chloride channel MID00_01865 PF02652 L-lactate permease MID00_01870 PF00392 Bacterial regulatory proteins, gntR family MID00_01870 PF07729 FCD domain MID00_01875 PF00285 Citrate synthase, C-terminal domain MID00_01880 PF03937 Flavinator of succinate dehydrogenase MID00_01885 PF13085 2Fe-2S iron-sulfur cluster binding domain MID00_01890 PF00890 FAD binding domain MID00_01890 PF02910 Fumarate reductase flavoprotein C-term MID00_01900 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit MID00_01905 PF00392 Bacterial regulatory proteins, gntR family MID00_01905 PF07702 UTRA domain MID00_01910 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MID00_01910 PF00056 lactate/malate dehydrogenase, NAD binding domain MID00_01920 PF07690 Major Facilitator Superfamily MID00_01925 PF06506 Propionate catabolism activator MID00_01925 PF00158 Sigma-54 interaction domain MID00_01925 PF02954 Bacterial regulatory protein, Fis family MID00_01935 PF00285 Citrate synthase, C-terminal domain MID00_01950 PF00330 Aconitase family (aconitate hydratase) MID00_01950 PF06434 Aconitate hydratase 2 N-terminus MID00_01950 PF11791 Aconitate B N-terminal domain MID00_01955 PF03480 Bacterial extracellular solute-binding protein, family 7 MID00_01965 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID00_01965 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID00_01980 PF08207 Elongation factor P (EF-P) KOW-like domain MID00_01980 PF01132 Elongation factor P (EF-P) OB domain MID00_01980 PF09285 Elongation factor P, C-terminal MID00_02015 PF00465 Iron-containing alcohol dehydrogenase MID00_02020 PF00171 Aldehyde dehydrogenase family MID00_02025 PF01590 GAF domain MID00_02025 PF02954 Bacterial regulatory protein, Fis family MID00_02025 PF00158 Sigma-54 interaction domain MID00_02035 PF00005 ABC transporter MID00_02035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID00_02040 PF00528 Binding-protein-dependent transport system inner membrane component MID00_02040 PF12911 N-terminal TM domain of oligopeptide transport permease C MID00_02045 PF00528 Binding-protein-dependent transport system inner membrane component MID00_02050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MID00_02065 PF02770 Acyl-CoA dehydrogenase, middle domain MID00_02065 PF18158 Adaptive response protein AidB N-terminal domain MID00_02065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MID00_02070 PF01544 CorA-like Mg2+ transporter protein MID00_02075 PF04241 Protein of unknown function (DUF423) MID00_02080 PF00962 Adenosine/AMP deaminase MID00_02085 PF02245 Methylpurine-DNA glycosylase (MPG) MID00_02100 PF03358 NADPH-dependent FMN reductase MID00_02105 PF13409 Glutathione S-transferase, N-terminal domain MID00_02110 PF01070 FMN-dependent dehydrogenase MID00_02135 PF02233 NAD(P) transhydrogenase beta subunit MID00_02140 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch MID00_02145 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MID00_02145 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MID00_02150 PF08402 TOBE domain MID00_02150 PF00005 ABC transporter MID00_02155 PF00528 Binding-protein-dependent transport system inner membrane component MID00_02165 PF00132 Bacterial transferase hexapeptide (six repeats) MID00_02175 PF00795 Carbon-nitrogen hydrolase MID00_02180 PF02311 AraC-like ligand binding domain MID00_02180 PF12833 Helix-turn-helix domain MID00_02190 PF01145 SPFH domain / Band 7 family MID00_02210 PF13840 ACT domain MID00_02210 PF00696 Amino acid kinase family MID00_02210 PF01842 ACT domain MID00_02215 PF01171 PP-loop family MID00_02215 PF09179 TilS substrate binding domain MID00_02220 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit MID00_02230 PF09190 DALR domain MID00_02230 PF01406 tRNA synthetases class I (C) catalytic domain MID00_02240 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MID00_02245 PF00149 Calcineurin-like phosphoesterase MID00_02250 PF02673 Bacitracin resistance protein BacA MID00_02255 PF03471 Transporter associated domain MID00_02255 PF03741 Integral membrane protein TerC family MID00_02260 PF00459 Inositol monophosphatase family MID00_02265 PF00588 SpoU rRNA Methylase family MID00_02275 PF02667 Short chain fatty acid transporter MID00_02280 PF01425 Amidase MID00_02285 PF16957 Malonate decarboxylase, alpha subunit, transporter MID00_02290 PF06857 Malonate decarboxylase delta subunit (MdcD) MID00_02295 PF01039 Carboxyl transferase domain MID00_02310 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase MID00_02315 PF14765 Polyketide synthase dehydratase MID00_02315 PF00550 Phosphopantetheine attachment site MID00_02315 PF02801 Beta-ketoacyl synthase, C-terminal domain MID00_02315 PF08659 KR domain MID00_02315 PF16197 Ketoacyl-synthetase C-terminal extension MID00_02315 PF00698 Acyl transferase domain MID00_02315 PF00109 Beta-ketoacyl synthase, N-terminal domain MID00_02320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_02320 PF03466 LysR substrate binding domain MID00_02325 PF00924 Mechanosensitive ion channel MID00_02325 PF05552 Conserved TM helix MID00_02335 PF00296 Luciferase-like monooxygenase MID00_02340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_02340 PF03466 LysR substrate binding domain MID00_02345 PF03401 Tripartite tricarboxylate transporter family receptor MID00_02360 PF00664 ABC transporter transmembrane region MID00_02360 PF00005 ABC transporter MID00_02365 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase MID00_02370 PF02321 Outer membrane efflux protein MID00_02375 PF00005 ABC transporter MID00_02375 PF02687 FtsX-like permease family MID00_02375 PF12704 MacB-like periplasmic core domain MID00_02380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID00_02385 PF07715 TonB-dependent Receptor Plug Domain MID00_02385 PF00593 TonB dependent receptor MID00_02405 PF00753 Metallo-beta-lactamase superfamily MID00_02410 PF01022 Bacterial regulatory protein, arsR family MID00_02415 PF11127 Protein of unknown function (DUF2892) MID00_02415 PF00581 Rhodanese-like domain MID00_02425 PF03743 Bacterial conjugation TrbI-like protein MID00_02440 PF04610 TrbL/VirB6 plasmid conjugal transfer protein MID00_02450 PF03135 CagE, TrbE, VirB family, component of type IV transporter system MID00_02460 PF04956 TrbC/VIRB2 family MID00_02465 PF00437 Type II/IV secretion system protein MID00_02475 PF02534 Type IV secretory system Conjugative DNA transfer MID00_02485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_02485 PF03466 LysR substrate binding domain MID00_02490 PF00795 Carbon-nitrogen hydrolase MID00_02505 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID00_02505 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MID00_02510 PF01925 Sulfite exporter TauE/SafE MID00_02515 PF13098 Thioredoxin-like domain MID00_02525 PF00578 AhpC/TSA family MID00_02530 PF02683 Cytochrome C biogenesis protein transmembrane region MID00_02530 PF11412 Disulphide bond corrector protein DsbC MID00_02535 PF00512 His Kinase A (phospho-acceptor) domain MID00_02535 PF08521 Two-component sensor kinase N-terminal MID00_02535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_02540 PF00486 Transcriptional regulatory protein, C terminal MID00_02540 PF00072 Response regulator receiver domain MID00_02545 PF00115 Cytochrome C and Quinol oxidase polypeptide I MID00_02555 PF00034 Cytochrome c MID00_02560 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID00_02565 PF00403 Heavy-metal-associated domain MID00_02570 PF00085 Thioredoxin MID00_02575 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID00_02580 PF00005 ABC transporter MID00_02585 PF03379 CcmB protein MID00_02590 PF01578 Cytochrome C assembly protein MID00_02600 PF03100 CcmE MID00_02605 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal MID00_02605 PF01578 Cytochrome C assembly protein MID00_02610 PF08534 Redoxin MID00_02615 PF03918 Cytochrome C biogenesis protein MID00_02635 PF10502 Signal peptidase, peptidase S26 MID00_02650 PF13614 AAA domain MID00_02650 PF00376 MerR family regulatory protein MID00_02685 PF05284 Protein of unknown function (DUF736) MID00_02695 PF04002 RadC-like JAB domain MID00_02700 PF02195 ParB-like nuclease domain MID00_02705 PF06067 Domain of unknown function (DUF932) MID00_02730 PF12167 Arm DNA-binding domain MID00_02730 PF00589 Phage integrase family MID00_02735 PF05190 MutS family domain IV MID00_02735 PF01624 MutS domain I MID00_02735 PF05188 MutS domain II MID00_02735 PF05192 MutS domain III MID00_02735 PF00488 MutS domain V MID00_02740 PF08007 Cupin superfamily protein MID00_02745 PF03594 Benzoate membrane transport protein MID00_02750 PF00067 Cytochrome P450 MID00_02755 PF00155 Aminotransferase class I and II MID00_02760 PF00202 Aminotransferase class-III MID00_02780 PF06804 NlpB/DapX lipoprotein MID00_02785 PF00701 Dihydrodipicolinate synthetase family MID00_02790 PF02163 Peptidase family M50 MID00_02795 PF01300 Telomere recombination MID00_02810 PF13091 PLD-like domain MID00_02810 PF13396 Phospholipase_D-nuclease N-terminal MID00_02815 PF08223 PaaX-like protein C-terminal domain MID00_02815 PF07848 PaaX-like protein MID00_02820 PF00474 Sodium:solute symporter family MID00_02840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_02840 PF03466 LysR substrate binding domain MID00_02850 PF00884 Sulfatase MID00_02860 PF04239 Protein of unknown function (DUF421) MID00_02865 PF00034 Cytochrome c MID00_02865 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID00_02870 PF01593 Flavin containing amine oxidoreductase MID00_02885 PF03466 LysR substrate binding domain MID00_02885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_02900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_02905 PF00072 Response regulator receiver domain MID00_02905 PF00486 Transcriptional regulatory protein, C terminal MID00_02920 PF13193 AMP-binding enzyme C-terminal domain MID00_02920 PF00501 AMP-binding enzyme MID00_02925 PF00005 ABC transporter MID00_02930 PF00528 Binding-protein-dependent transport system inner membrane component MID00_02935 PF00528 Binding-protein-dependent transport system inner membrane component MID00_02940 PF12849 PBP superfamily domain MID00_02945 PF13089 Polyphosphate kinase N-terminal domain MID00_02945 PF13090 Polyphosphate kinase C-terminal domain 2 MID00_02945 PF02503 Polyphosphate kinase middle domain MID00_02945 PF17941 Polyphosphate kinase C-terminal domain 1 MID00_02950 PF02541 Ppx/GppA phosphatase family MID00_02960 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MID00_02960 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MID00_02960 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MID00_02960 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MID00_02965 PF00809 Pterin binding enzyme MID00_02970 PF00004 ATPase family associated with various cellular activities (AAA) MID00_02970 PF17862 AAA+ lid domain MID00_02970 PF06480 FtsH Extracellular MID00_02970 PF01434 Peptidase family M41 MID00_02975 PF01728 FtsJ-like methyltransferase MID00_02980 PF01985 CRS1 / YhbY (CRM) domain MID00_02985 PF03449 Transcription elongation factor, N-terminal MID00_02985 PF01272 Transcription elongation factor, GreA/GreB, C-term MID00_02990 PF00860 Permease family MID00_02995 PF00300 Histidine phosphatase superfamily (branch 1) MID00_03010 PF02142 MGS-like domain MID00_03010 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MID00_03010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MID00_03015 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain MID00_03015 PF00117 Glutamine amidotransferase class-I MID00_03020 PF00923 Transaldolase/Fructose-6-phosphate aldolase MID00_03025 PF08241 Methyltransferase domain MID00_03030 PF00528 Binding-protein-dependent transport system inner membrane component MID00_03035 PF00005 ABC transporter MID00_03040 PF09084 NMT1/THI5 like MID00_03045 PF02132 RecR protein MID00_03045 PF13662 Toprim domain MID00_03050 PF02575 YbaB/EbfC DNA-binding family MID00_03055 PF12169 DNA polymerase III subunits gamma and tau domain III MID00_03055 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding MID00_03055 PF12170 DNA polymerase III tau subunit V interacting with alpha MID00_03065 PF13361 UvrD-like helicase C-terminal domain MID00_03065 PF00580 UvrD/REP helicase N-terminal domain MID00_03065 PF12705 PD-(D/E)XK nuclease superfamily MID00_03075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_03075 PF03459 TOBE domain MID00_03080 PF00005 ABC transporter MID00_03080 PF03459 TOBE domain MID00_03085 PF00528 Binding-protein-dependent transport system inner membrane component MID00_03095 PF00589 Phage integrase family MID00_03095 PF02899 Phage integrase, N-terminal SAM-like domain MID00_03100 PF04073 Aminoacyl-tRNA editing domain MID00_03105 PF07690 Major Facilitator Superfamily MID00_03115 PF13460 NAD(P)H-binding MID00_03120 PF01638 HxlR-like helix-turn-helix MID00_03145 PF03480 Bacterial extracellular solute-binding protein, family 7 MID00_03155 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID00_03165 PF00701 Dihydrodipicolinate synthetase family MID00_03170 PF00171 Aldehyde dehydrogenase family MID00_03175 PF03466 LysR substrate binding domain MID00_03175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_03180 PF03949 Malic enzyme, NAD binding domain MID00_03180 PF01515 Phosphate acetyl/butaryl transferase MID00_03180 PF00390 Malic enzyme, N-terminal domain MID00_03185 PF03401 Tripartite tricarboxylate transporter family receptor MID00_03195 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE MID00_03200 PF01520 N-acetylmuramoyl-L-alanine amidase MID00_03200 PF11741 AMIN domain MID00_03205 PF09335 SNARE associated Golgi protein MID00_03210 PF01119 DNA mismatch repair protein, C-terminal domain MID00_03210 PF08676 MutL C terminal dimerisation domain MID00_03220 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin MID00_03225 PF00586 AIR synthase related protein, N-terminal domain MID00_03225 PF02769 AIR synthase related protein, C-terminal domain MID00_03230 PF00308 Bacterial dnaA protein MID00_03230 PF08299 Bacterial dnaA protein helix-turn-helix MID00_03240 PF01743 Poly A polymerase head domain MID00_03240 PF12626 Polymerase A arginine-rich C-terminus MID00_03240 PF12627 Probable RNA and SrmB- binding site of polymerase A MID00_03245 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) MID00_03250 PF03167 Uracil DNA glycosylase superfamily MID00_03265 PF07690 Major Facilitator Superfamily MID00_03275 PF00440 Bacterial regulatory proteins, tetR family MID00_03280 PF05681 Fumarate hydratase (Fumerase) MID00_03280 PF05683 Fumarase C-terminus MID00_03285 PF00378 Enoyl-CoA hydratase/isomerase MID00_03295 PF02091 Glycyl-tRNA synthetase alpha subunit MID00_03300 PF02092 Glycyl-tRNA synthetase beta subunit MID00_03300 PF05746 DALR anticodon binding domain MID00_03310 PF01553 Acyltransferase MID00_03320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID00_03325 PF07670 Nucleoside recognition MID00_03330 PF00398 Ribosomal RNA adenine dimethylase MID00_03335 PF09312 SurA N-terminal domain MID00_03335 PF00639 PPIC-type PPIASE domain MID00_03340 PF04453 LPS transport system D MID00_03345 PF01636 Phosphotransferase enzyme family MID00_03350 PF00483 Nucleotidyl transferase MID00_03360 PF00005 ABC transporter MID00_03365 PF00528 Binding-protein-dependent transport system inner membrane component MID00_03370 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID00_03375 PF03180 NLPA lipoprotein MID00_03380 PF00528 Binding-protein-dependent transport system inner membrane component MID00_03385 PF09383 NIL domain MID00_03385 PF00005 ABC transporter MID00_03400 PF01266 FAD dependent oxidoreductase MID00_03400 PF05430 S-adenosyl-L-methionine-dependent methyltransferase MID00_03405 PF00459 Inositol monophosphatase family MID00_03410 PF00501 AMP-binding enzyme MID00_03410 PF13193 AMP-binding enzyme C-terminal domain MID00_03415 PF07687 Peptidase dimerisation domain MID00_03415 PF01546 Peptidase family M20/M25/M40 MID00_03420 PF03061 Thioesterase superfamily MID00_03425 PF00571 CBS domain MID00_03425 PF01769 Divalent cation transporter MID00_03425 PF03448 MgtE intracellular N domain MID00_03435 PF07516 SecA Wing and Scaffold domain MID00_03435 PF01043 SecA preprotein cross-linking domain MID00_03435 PF02810 SEC-C motif MID00_03435 PF07517 SecA DEAD-like domain MID00_03440 PF01551 Peptidase family M23 MID00_03440 PF10145 Phage-related minor tail protein MID00_03440 PF01464 Transglycosylase SLT domain MID00_03450 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase MID00_03455 PF12327 FtsZ family, C-terminal domain MID00_03455 PF00091 Tubulin/FtsZ family, GTPase domain MID00_03460 PF02491 SHS2 domain inserted in FTSA MID00_03465 PF03799 Cell division protein FtsQ MID00_03465 PF08478 POTRA domain, FtsQ-type MID00_03470 PF07478 D-ala D-ala ligase C-terminus MID00_03470 PF01820 D-ala D-ala ligase N-terminus MID00_03475 PF08245 Mur ligase middle domain MID00_03475 PF01225 Mur ligase family, catalytic domain MID00_03475 PF02875 Mur ligase family, glutamate ligase domain MID00_03480 PF04101 Glycosyltransferase family 28 C-terminal domain MID00_03480 PF03033 Glycosyltransferase family 28 N-terminal domain MID00_03485 PF01098 Cell cycle protein MID00_03490 PF02875 Mur ligase family, glutamate ligase domain MID00_03490 PF08245 Mur ligase middle domain MID00_03495 PF00953 Glycosyl transferase family 4 MID00_03500 PF01225 Mur ligase family, catalytic domain MID00_03500 PF02875 Mur ligase family, glutamate ligase domain MID00_03500 PF08245 Mur ligase middle domain MID00_03505 PF00905 Penicillin binding protein transpeptidase domain MID00_03505 PF03717 Penicillin-binding Protein dimerisation domain MID00_03510 PF04999 Cell division protein FtsL MID00_03515 PF01795 MraW methylase family MID00_03520 PF02381 MraZ protein, putative antitoxin-like MID00_03530 PF16326 ABC transporter C-terminal domain MID00_03530 PF12848 ABC transporter MID00_03530 PF00005 ABC transporter MID00_03535 PF00111 2Fe-2S iron-sulfur cluster binding domain MID00_03540 PF00268 Ribonucleotide reductase, small chain MID00_03545 PF00317 Ribonucleotide reductase, all-alpha domain MID00_03545 PF03477 ATP cone domain MID00_03545 PF02867 Ribonucleotide reductase, barrel domain MID00_03550 PF00271 Helicase conserved C-terminal domain MID00_03550 PF00270 DEAD/DEAH box helicase MID00_03550 PF00570 HRDC domain MID00_03550 PF09382 RQC domain MID00_03550 PF16124 RecQ zinc-binding MID00_03560 PF00654 Voltage gated chloride channel MID00_03565 PF02322 Cytochrome bd terminal oxidase subunit II MID00_03570 PF01654 Cytochrome bd terminal oxidase subunit I MID00_03575 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain MID00_03575 PF00749 tRNA synthetases class I (E and Q), catalytic domain MID00_03580 PF03775 Septum formation inhibitor MinC, C-terminal domain MID00_03580 PF05209 Septum formation inhibitor MinC, N-terminal domain MID00_03585 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MID00_03590 PF03776 Septum formation topological specificity factor MinE MID00_03610 PF00005 ABC transporter MID00_03610 PF12848 ABC transporter MID00_03620 PF00535 Glycosyl transferase family 2 MID00_03625 PF17760 UvrA interaction domain MID00_03625 PF17755 UvrA DNA-binding domain MID00_03625 PF00005 ABC transporter MID00_03630 PF04715 Anthranilate synthase component I, N terminal region MID00_03630 PF00425 chorismate binding enzyme MID00_03640 PF00899 ThiF family MID00_03650 PF01243 Pyridoxamine 5'-phosphate oxidase MID00_03650 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region MID00_03655 PF01613 Flavin reductase like domain MID00_03660 PF01266 FAD dependent oxidoreductase MID00_03665 PF00551 Formyl transferase MID00_03675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_03675 PF03466 LysR substrate binding domain MID00_03680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID00_03680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MID00_03680 PF02770 Acyl-CoA dehydrogenase, middle domain MID00_03685 PF00171 Aldehyde dehydrogenase family MID00_03685 PF01575 MaoC like domain MID00_03690 PF12697 Alpha/beta hydrolase family MID00_03695 PF03481 Putative GTP-binding controlling metal-binding MID00_03695 PF01300 Telomere recombination MID00_03700 PF02222 ATP-grasp domain MID00_03700 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain MID00_03705 PF00731 AIR carboxylase MID00_03710 PF01259 SAICAR synthetase MID00_03715 PF01116 Fructose-bisphosphate aldolase class-II MID00_03720 PF00994 Probable molybdopterin binding domain MID00_03730 PF00171 Aldehyde dehydrogenase family MID00_03740 PF00162 Phosphoglycerate kinase MID00_03745 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MID00_03745 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MID00_03750 PF02780 Transketolase, C-terminal domain MID00_03750 PF00456 Transketolase, thiamine diphosphate binding domain MID00_03750 PF02779 Transketolase, pyrimidine binding domain MID00_03755 PF04452 RNA methyltransferase MID00_03760 PF01337 Barstar (barnase inhibitor) MID00_03770 PF01515 Phosphate acetyl/butaryl transferase MID00_03770 PF00390 Malic enzyme, N-terminal domain MID00_03770 PF03949 Malic enzyme, NAD binding domain MID00_03780 PF00155 Aminotransferase class I and II MID00_03785 PF01464 Transglycosylase SLT domain MID00_03790 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MID00_03795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID00_03800 PF03466 LysR substrate binding domain MID00_03800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_03805 PF08946 Osmosensory transporter coiled coil MID00_03805 PF00083 Sugar (and other) transporter MID00_03815 PF01425 Amidase MID00_03830 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family MID00_03835 PF00970 Oxidoreductase FAD-binding domain MID00_03835 PF00111 2Fe-2S iron-sulfur cluster binding domain MID00_03845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_03845 PF03466 LysR substrate binding domain MID00_03860 PF05957 Bacterial protein of unknown function (DUF883) MID00_03875 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family MID00_03880 PF02547 Queuosine biosynthesis protein MID00_03885 PF01702 Queuine tRNA-ribosyltransferase MID00_03890 PF02699 Preprotein translocase subunit MID00_03895 PF13721 SecD export protein N-terminal TM region MID00_03895 PF02355 Protein export membrane protein MID00_03895 PF07549 SecD/SecF GG Motif MID00_03900 PF07549 SecD/SecF GG Motif MID00_03900 PF02355 Protein export membrane protein MID00_03905 PF00557 Metallopeptidase family M24 MID00_03915 PF04055 Radical SAM superfamily MID00_03915 PF01938 TRAM domain MID00_03915 PF00919 Uncharacterized protein family UPF0004 MID00_03920 PF02562 PhoH-like protein MID00_03925 PF02130 Uncharacterized protein family UPF0054 MID00_03930 PF03471 Transporter associated domain MID00_03930 PF00571 CBS domain MID00_03935 PF00795 Carbon-nitrogen hydrolase MID00_03940 PF00990 Diguanylate cyclase, GGDEF domain MID00_03940 PF03707 Bacterial signalling protein N terminal repeat MID00_03940 PF00563 EAL domain MID00_03975 PF07690 Major Facilitator Superfamily MID00_03985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID00_03990 PF00873 AcrB/AcrD/AcrF family MID00_04005 PF04055 Radical SAM superfamily MID00_04005 PF06968 Biotin and Thiamin Synthesis associated domain MID00_04025 PF08534 Redoxin MID00_04030 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID00_04035 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MID00_04040 PF03480 Bacterial extracellular solute-binding protein, family 7 MID00_04045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_04045 PF00512 His Kinase A (phospho-acceptor) domain MID00_04045 PF00989 PAS fold MID00_04050 PF00196 Bacterial regulatory proteins, luxR family MID00_04050 PF00072 Response regulator receiver domain MID00_04055 PF01967 MoaC family MID00_04065 PF02391 MoaE protein MID00_04070 PF00994 Probable molybdopterin binding domain MID00_04075 PF00994 Probable molybdopterin binding domain MID00_04075 PF03454 MoeA C-terminal region (domain IV) MID00_04075 PF03453 MoeA N-terminal region (domain I and II) MID00_04085 PF12804 MobA-like NTP transferase domain MID00_04090 PF06463 Molybdenum Cofactor Synthesis C MID00_04090 PF04055 Radical SAM superfamily MID00_04095 PF12727 PBP superfamily domain MID00_04095 PF12728 Helix-turn-helix domain MID00_04105 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region MID00_04105 PF00037 4Fe-4S binding domain MID00_04105 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MID00_04110 PF12838 4Fe-4S dicluster domain MID00_04110 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MID00_04110 PF00384 Molybdopterin oxidoreductase MID00_04110 PF01568 Molydopterin dinucleotide binding domain MID00_04110 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MID00_04115 PF02634 FdhD/NarQ family MID00_04125 PF00582 Universal stress protein family MID00_04155 PF00535 Glycosyl transferase family 2 MID00_04160 PF01152 Bacterial-like globin MID00_04165 PF02082 Transcriptional regulator MID00_04170 PF01842 ACT domain MID00_04170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MID00_04170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MID00_04175 PF03150 Di-haem cytochrome c peroxidase MID00_04175 PF00034 Cytochrome c MID00_04180 PF00005 ABC transporter MID00_04185 PF00005 ABC transporter MID00_04185 PF12399 Branched-chain amino acid ATP-binding cassette transporter MID00_04190 PF11862 Domain of unknown function (DUF3382) MID00_04190 PF02653 Branched-chain amino acid transport system / permease component MID00_04195 PF02653 Branched-chain amino acid transport system / permease component MID00_04215 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MID00_04215 PF12833 Helix-turn-helix domain MID00_04215 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MID00_04215 PF02805 Metal binding domain of Ada MID00_04225 PF02683 Cytochrome C biogenesis protein transmembrane region MID00_04235 PF03918 Cytochrome C biogenesis protein MID00_04240 PF08534 Redoxin MID00_04245 PF01578 Cytochrome C assembly protein MID00_04245 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal MID00_04250 PF03100 CcmE MID00_04260 PF01578 Cytochrome C assembly protein MID00_04265 PF03379 CcmB protein MID00_04270 PF00005 ABC transporter MID00_04280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_04280 PF03466 LysR substrate binding domain MID00_04285 PF00484 Carbonic anhydrase MID00_04290 PF03797 Autotransporter beta-domain MID00_04290 PF00657 GDSL-like Lipase/Acylhydrolase MID00_04300 PF00005 ABC transporter MID00_04300 PF16326 ABC transporter C-terminal domain MID00_04300 PF12848 ABC transporter MID00_04305 PF01909 Nucleotidyltransferase domain MID00_04305 PF13427 Domain of unknown function (DUF4111) MID00_04310 PF01909 Nucleotidyltransferase domain MID00_04310 PF13427 Domain of unknown function (DUF4111) MID00_04330 PF06071 Protein of unknown function (DUF933) MID00_04330 PF01926 50S ribosome-binding GTPase MID00_04340 PF01195 Peptidyl-tRNA hydrolase MID00_04345 PF14693 Ribosomal protein TL5, C-terminal domain MID00_04345 PF01386 Ribosomal L25p family MID00_04350 PF14572 Phosphoribosyl synthetase-associated domain MID00_04350 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MID00_04360 PF00288 GHMP kinases N terminal domain MID00_04360 PF08544 GHMP kinases C terminal MID00_04365 PF03550 Outer membrane lipoprotein LolB MID00_04375 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain MID00_04375 PF06827 Zinc finger found in FPG and IleRS MID00_04375 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain MID00_04385 PF01494 FAD binding domain MID00_04395 PF04209 homogentisate 1,2-dioxygenase MID00_04400 PF01557 Fumarylacetoacetate (FAA) hydrolase family MID00_04410 PF01565 FAD binding domain MID00_04410 PF02913 FAD linked oxidases, C-terminal domain MID00_04415 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MID00_04415 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MID00_04415 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MID00_04415 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MID00_04420 PF00534 Glycosyl transferases group 1 MID00_04420 PF13477 Glycosyl transferase 4-like MID00_04425 PF17103 Stealth protein CR4, conserved region 4 MID00_04425 PF11380 Stealth protein CR2, conserved region 2 MID00_04425 PF17101 Stealth protein CR1, conserved region 1 MID00_04425 PF00534 Glycosyl transferases group 1 MID00_04425 PF17102 Stealth protein CR3, conserved region 3 MID00_04430 PF00534 Glycosyl transferases group 1 MID00_04430 PF13439 Glycosyltransferase Family 4 MID00_04440 PF01370 NAD dependent epimerase/dehydratase family MID00_04445 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MID00_04445 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MID00_04445 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MID00_04450 PF00953 Glycosyl transferase family 4 MID00_04455 PF03466 LysR substrate binding domain MID00_04455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_04460 PF01014 Uricase MID00_04460 PF09349 OHCU decarboxylase MID00_04465 PF04115 Ureidoglycolate lyase MID00_04470 PF00596 Class II Aldolase and Adducin N-terminal domain MID00_04475 PF01361 Tautomerase enzyme MID00_04480 PF00860 Permease family MID00_04490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_04490 PF03466 LysR substrate binding domain MID00_04495 PF00205 Thiamine pyrophosphate enzyme, central domain MID00_04495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MID00_04495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MID00_04500 PF01261 Xylose isomerase-like TIM barrel MID00_04505 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MID00_04505 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MID00_04510 PF13660 Domain of unknown function (DUF4147) MID00_04510 PF05161 MOFRL family MID00_04515 PF03928 Haem-degrading MID00_04520 PF00224 Pyruvate kinase, barrel domain MID00_04520 PF02887 Pyruvate kinase, alpha/beta domain MID00_04525 PF03232 Ubiquinone biosynthesis protein COQ7 MID00_04550 PF00115 Cytochrome C and Quinol oxidase polypeptide I MID00_04555 PF02566 OsmC-like protein MID00_04560 PF00303 Thymidylate synthase MID00_04565 PF00186 Dihydrofolate reductase MID00_04570 PF01597 Glycine cleavage H-protein MID00_04580 PF01276 Orn/Lys/Arg decarboxylase, major domain MID00_04580 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain MID00_04580 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain MID00_04585 PF00692 dUTPase MID00_04600 PF10609 NUBPL iron-transfer P-loop NTPase MID00_04610 PF09334 tRNA synthetases class I (M) MID00_04610 PF01588 Putative tRNA binding domain MID00_04615 PF16916 Dimerisation domain of Zinc Transporter MID00_04615 PF01545 Cation efflux family MID00_04620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_04620 PF03466 LysR substrate binding domain MID00_04625 PF05899 Protein of unknown function (DUF861) MID00_04625 PF07883 Cupin domain MID00_04630 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MID00_04650 PF00596 Class II Aldolase and Adducin N-terminal domain MID00_04655 PF07690 Major Facilitator Superfamily MID00_04655 PF00083 Sugar (and other) transporter MID00_04660 PF01323 DSBA-like thioredoxin domain MID00_04665 PF00990 Diguanylate cyclase, GGDEF domain MID00_04665 PF00072 Response regulator receiver domain MID00_04670 PF01699 Sodium/calcium exchanger protein MID00_04680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_04680 PF03466 LysR substrate binding domain MID00_04700 PF14525 AraC-binding-like domain MID00_04700 PF12833 Helix-turn-helix domain MID00_04705 PF00857 Isochorismatase family MID00_04705 PF00550 Phosphopantetheine attachment site MID00_04720 PF03466 LysR substrate binding domain MID00_04720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_04725 PF00581 Rhodanese-like domain MID00_04730 PF02321 Outer membrane efflux protein MID00_04735 PF00085 Thioredoxin MID00_04745 PF00873 AcrB/AcrD/AcrF family MID00_04750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID00_04755 PF01022 Bacterial regulatory protein, arsR family MID00_04760 PF10417 C-terminal domain of 1-Cys peroxiredoxin MID00_04760 PF00578 AhpC/TSA family MID00_04765 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal MID00_04765 PF00355 Rieske [2Fe-2S] domain MID00_04790 PF03848 Tellurite resistance protein TehB MID00_04800 PF01022 Bacterial regulatory protein, arsR family MID00_04805 PF00753 Metallo-beta-lactamase superfamily MID00_04810 PF00005 ABC transporter MID00_04810 PF00664 ABC transporter transmembrane region MID00_04815 PF00664 ABC transporter transmembrane region MID00_04815 PF00005 ABC transporter MID00_04820 PF01654 Cytochrome bd terminal oxidase subunit I MID00_04825 PF02322 Cytochrome bd terminal oxidase subunit II MID00_04830 PF08173 Membrane bound YbgT-like protein MID00_04835 PF07690 Major Facilitator Superfamily MID00_04845 PF00916 Sulfate permease family MID00_04845 PF01740 STAS domain MID00_04865 PF02627 Carboxymuconolactone decarboxylase family MID00_04875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MID00_04875 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID00_04890 PF03466 LysR substrate binding domain MID00_04890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_04895 PF00106 short chain dehydrogenase MID00_04905 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus MID00_04905 PF00561 alpha/beta hydrolase fold MID00_04910 PF00440 Bacterial regulatory proteins, tetR family MID00_04920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID00_04925 PF00005 ABC transporter MID00_04940 PF02321 Outer membrane efflux protein MID00_04950 PF00753 Metallo-beta-lactamase superfamily MID00_04950 PF10996 Beta-Casp domain MID00_04950 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MID00_04955 PF03641 Possible lysine decarboxylase MID00_04955 PF11892 Domain of unknown function (DUF3412) MID00_04955 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases MID00_04975 PF03466 LysR substrate binding domain MID00_04975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_04990 PF13614 AAA domain MID00_05035 PF01131 DNA topoisomerase MID00_05035 PF01751 Toprim domain MID00_05145 PF12728 Helix-turn-helix domain MID00_05200 PF04002 RadC-like JAB domain MID00_05275 PF00589 Phage integrase family MID00_05275 PF14659 Phage integrase, N-terminal SAM-like domain MID00_05275 PF13356 Arm DNA-binding domain MID00_05285 PF02390 Putative methyltransferase MID00_05290 PF00561 alpha/beta hydrolase fold MID00_05295 PF05690 Thiazole biosynthesis protein ThiG MID00_05295 PF02597 ThiS family MID00_05300 PF04972 BON domain MID00_05300 PF01476 LysM domain MID00_05305 PF02978 Signal peptide binding domain MID00_05305 PF00448 SRP54-type protein, GTPase domain MID00_05305 PF02881 SRP54-type protein, helical bundle domain MID00_05320 PF01510 N-acetylmuramoyl-L-alanine amidase MID00_05325 PF01070 FMN-dependent dehydrogenase MID00_05330 PF13640 2OG-Fe(II) oxygenase superfamily MID00_05330 PF18331 PKHD-type hydroxylase C-terminal domain MID00_05335 PF07715 TonB-dependent Receptor Plug Domain MID00_05335 PF00593 TonB dependent receptor MID00_05340 PF00183 Hsp90 protein MID00_05340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_05350 PF08803 Putative mono-oxygenase ydhR MID00_05365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_05365 PF03466 LysR substrate binding domain MID00_05370 PF03401 Tripartite tricarboxylate transporter family receptor MID00_05375 PF01425 Amidase MID00_05385 PF00440 Bacterial regulatory proteins, tetR family MID00_05390 PF07690 Major Facilitator Superfamily MID00_05395 PF01479 S4 domain MID00_05400 PF13378 Enolase C-terminal domain-like MID00_05400 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MID00_05405 PF03401 Tripartite tricarboxylate transporter family receptor MID00_05410 PF01966 HD domain MID00_05420 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 MID00_05430 PF05698 Bacterial trigger factor protein (TF) C-terminus MID00_05435 PF03741 Integral membrane protein TerC family MID00_05450 PF07715 TonB-dependent Receptor Plug Domain MID00_05450 PF00593 TonB dependent receptor MID00_05450 PF07660 Secretin and TonB N terminus short domain MID00_05460 PF00528 Binding-protein-dependent transport system inner membrane component MID00_05465 PF00528 Binding-protein-dependent transport system inner membrane component MID00_05470 PF13416 Bacterial extracellular solute-binding protein MID00_05475 PF08402 TOBE domain MID00_05475 PF00005 ABC transporter MID00_05480 PF08220 DeoR-like helix-turn-helix domain MID00_05480 PF00455 DeoR C terminal sensor domain MID00_05485 PF03401 Tripartite tricarboxylate transporter family receptor MID00_05495 PF01970 Tripartite tricarboxylate transporter TctA family MID00_05500 PF00578 AhpC/TSA family MID00_05515 PF00324 Amino acid permease MID00_05520 PF00266 Aminotransferase class-V MID00_05525 PF01037 Lrp/AsnC ligand binding domain MID00_05530 PF00392 Bacterial regulatory proteins, gntR family MID00_05545 PF02652 L-lactate permease MID00_05550 PF00392 Bacterial regulatory proteins, gntR family MID00_05550 PF07729 FCD domain MID00_05555 PF01070 FMN-dependent dehydrogenase MID00_05560 PF01565 FAD binding domain MID00_05560 PF09330 D-lactate dehydrogenase, membrane binding MID00_05565 PF00664 ABC transporter transmembrane region MID00_05565 PF00005 ABC transporter MID00_05565 PF04954 Siderophore-interacting protein MID00_05565 PF08021 Siderophore-interacting FAD-binding domain MID00_05570 PF00005 ABC transporter MID00_05575 PF01032 FecCD transport family MID00_05580 PF01032 FecCD transport family MID00_05585 PF00005 ABC transporter MID00_05590 PF01497 Periplasmic binding protein MID00_05595 PF07715 TonB-dependent Receptor Plug Domain MID00_05595 PF00593 TonB dependent receptor MID00_05605 PF00376 MerR family regulatory protein MID00_05605 PF09278 MerR, DNA binding MID00_05610 PF00970 Oxidoreductase FAD-binding domain MID00_05610 PF00111 2Fe-2S iron-sulfur cluster binding domain MID00_05610 PF00175 Oxidoreductase NAD-binding domain MID00_05615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID00_05615 PF00529 HlyD membrane-fusion protein of T1SS MID00_05620 PF00873 AcrB/AcrD/AcrF family MID00_05625 PF02321 Outer membrane efflux protein MID00_05630 PF01047 MarR family MID00_05640 PF16347 Domain of unknown function (DUF4976) MID00_05640 PF00884 Sulfatase MID00_05650 PF05974 Domain of unknown function (DUF892) MID00_05660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_05660 PF03466 LysR substrate binding domain MID00_05665 PF07690 Major Facilitator Superfamily MID00_05670 PF00248 Aldo/keto reductase family MID00_05675 PF13609 Gram-negative porin MID00_05700 PF18766 SWI2/SNF2 ATPase MID00_05700 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) MID00_05700 PF11867 Domain of unknown function (DUF3387) MID00_05705 PF01420 Type I restriction modification DNA specificity domain MID00_05710 PF12161 HsdM N-terminal domain MID00_05710 PF02384 N-6 DNA Methylase MID00_05740 PF04002 RadC-like JAB domain MID00_05745 PF09588 YqaJ-like viral recombinase domain MID00_05760 PF00271 Helicase conserved C-terminal domain MID00_05760 PF08463 EcoEI R protein C-terminal MID00_05760 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) MID00_05760 PF04851 Type III restriction enzyme, res subunit MID00_05770 PF13356 Arm DNA-binding domain MID00_05770 PF00589 Phage integrase family MID00_05780 PF01594 AI-2E family transporter MID00_05790 PF03401 Tripartite tricarboxylate transporter family receptor MID00_05795 PF02515 CoA-transferase family III MID00_05800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MID00_05800 PF02770 Acyl-CoA dehydrogenase, middle domain MID00_05800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID00_05810 PF02540 NAD synthase MID00_05820 PF01425 Amidase MID00_05825 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MID00_05825 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID00_05835 PF03480 Bacterial extracellular solute-binding protein, family 7 MID00_05845 PF00920 Dehydratase family MID00_05850 PF00311 Phosphoenolpyruvate carboxylase MID00_05855 PF01925 Sulfite exporter TauE/SafE MID00_05860 PF01795 MraW methylase family MID00_05875 PF01743 Poly A polymerase head domain MID00_05875 PF12627 Probable RNA and SrmB- binding site of polymerase A MID00_05880 PF01464 Transglycosylase SLT domain MID00_05880 PF14718 Soluble lytic murein transglycosylase L domain MID00_05890 PF02219 Methylenetetrahydrofolate reductase MID00_05895 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV MID00_05900 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain MID00_05900 PF05221 S-adenosyl-L-homocysteine hydrolase MID00_05905 PF02773 S-adenosylmethionine synthetase, C-terminal domain MID00_05905 PF00438 S-adenosylmethionine synthetase, N-terminal domain MID00_05905 PF02772 S-adenosylmethionine synthetase, central domain MID00_05915 PF03279 Bacterial lipid A biosynthesis acyltransferase MID00_05920 PF01678 Diaminopimelate epimerase MID00_05930 PF00589 Phage integrase family MID00_05930 PF02899 Phage integrase, N-terminal SAM-like domain MID00_05935 PF01297 Zinc-uptake complex component A periplasmic MID00_05940 PF00950 ABC 3 transport family MID00_05945 PF00005 ABC transporter MID00_05950 PF01475 Ferric uptake regulator family MID00_05955 PF02492 CobW/HypB/UreG, nucleotide-binding domain MID00_05955 PF07683 Cobalamin synthesis protein cobW C-terminal domain MID00_05960 PF01258 Prokaryotic dksA/traR C4-type zinc finger MID00_05965 PF00227 Proteasome subunit MID00_05970 PF07724 AAA domain (Cdc48 subfamily) MID00_05970 PF00004 ATPase family associated with various cellular activities (AAA) MID00_05985 PF01923 Cobalamin adenosyltransferase MID00_06000 PF00202 Aminotransferase class-III MID00_06010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_06010 PF03466 LysR substrate binding domain MID00_06015 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MID00_06015 PF01411 tRNA synthetases class II (A) MID00_06015 PF02272 DHHA1 domain MID00_06025 PF01810 LysE type translocator MID00_06050 PF05662 Coiled stalk of trimeric autotransporter adhesin MID00_06050 PF03895 YadA-like membrane anchor domain MID00_06050 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin MID00_06050 PF13018 Extended Signal Peptide of Type V secretion system MID00_06055 PF12833 Helix-turn-helix domain MID00_06065 PF01042 Endoribonuclease L-PSP MID00_06070 PF01042 Endoribonuclease L-PSP MID00_06080 PF04172 LrgB-like family MID00_06085 PF03458 UPF0126 domain MID00_06090 PF07690 Major Facilitator Superfamily MID00_06100 PF00561 alpha/beta hydrolase fold MID00_06115 PF04262 Glutamate-cysteine ligase MID00_06120 PF00593 TonB dependent receptor MID00_06120 PF07715 TonB-dependent Receptor Plug Domain MID00_06135 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID00_06145 PF07690 Major Facilitator Superfamily MID00_06155 PF00970 Oxidoreductase FAD-binding domain MID00_06155 PF00111 2Fe-2S iron-sulfur cluster binding domain MID00_06160 PF00355 Rieske [2Fe-2S] domain MID00_06175 PF00171 Aldehyde dehydrogenase family MID00_06180 PF01958 Domain of unknown function DUF108 MID00_06180 PF03447 Homoserine dehydrogenase, NAD binding domain MID00_06185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MID00_06185 PF00205 Thiamine pyrophosphate enzyme, central domain MID00_06185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MID00_06195 PF09339 IclR helix-turn-helix domain MID00_06195 PF01614 Bacterial transcriptional regulator MID00_06215 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain MID00_06215 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MID00_06215 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MID00_06220 PF02515 CoA-transferase family III MID00_06230 PF00378 Enoyl-CoA hydratase/isomerase MID00_06235 PF01493 GXGXG motif MID00_06235 PF01645 Conserved region in glutamate synthase MID00_06235 PF04898 Glutamate synthase central domain MID00_06235 PF00310 Glutamine amidotransferases class-II MID00_06240 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MID00_06240 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID00_06250 PF13361 UvrD-like helicase C-terminal domain MID00_06250 PF00580 UvrD/REP helicase N-terminal domain MID00_06255 PF00271 Helicase conserved C-terminal domain MID00_06255 PF17764 3′ DNA-binding domain (3′BD) MID00_06255 PF18074 Primosomal protein N C-terminal domain MID00_06255 PF18319 PriA DNA helicase Cys-rich region (CRR) domain MID00_06255 PF00270 DEAD/DEAH box helicase MID00_06260 PF01208 Uroporphyrinogen decarboxylase (URO-D) MID00_06270 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term MID00_06270 PF12833 Helix-turn-helix domain MID00_06280 PF02975 Methylamine dehydrogenase, L chain MID00_06285 PF00578 AhpC/TSA family MID00_06295 PF06433 Methylamine dehydrogenase heavy chain (MADH) MID00_06305 PF00171 Aldehyde dehydrogenase family MID00_06310 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MID00_06310 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MID00_06320 PF00701 Dihydrodipicolinate synthetase family MID00_06325 PF00528 Binding-protein-dependent transport system inner membrane component MID00_06330 PF00528 Binding-protein-dependent transport system inner membrane component MID00_06335 PF00005 ABC transporter MID00_06340 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID00_06345 PF03466 LysR substrate binding domain MID00_06345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_06355 PF00005 ABC transporter MID00_06360 PF00528 Binding-protein-dependent transport system inner membrane component MID00_06365 PF01979 Amidohydrolase family MID00_06370 PF01979 Amidohydrolase family MID00_06375 PF01546 Peptidase family M20/M25/M40 MID00_06380 PF01613 Flavin reductase like domain MID00_06395 PF01636 Phosphotransferase enzyme family MID00_06400 PF13673 Acetyltransferase (GNAT) domain MID00_06405 PF04229 GrpB protein MID00_06415 PF04235 Protein of unknown function (DUF418) MID00_06425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_06425 PF03466 LysR substrate binding domain MID00_06430 PF01063 Amino-transferase class IV MID00_06440 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MID00_06440 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MID00_06455 PF02678 Pirin MID00_06455 PF05726 Pirin C-terminal cupin domain MID00_06465 PF03741 Integral membrane protein TerC family MID00_06465 PF03471 Transporter associated domain MID00_06475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_06475 PF03466 LysR substrate binding domain MID00_06485 PF07690 Major Facilitator Superfamily MID00_06490 PF00270 DEAD/DEAH box helicase MID00_06490 PF00271 Helicase conserved C-terminal domain MID00_06500 PF01032 FecCD transport family MID00_06505 PF00005 ABC transporter MID00_06525 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MID00_06525 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MID00_06535 PF00005 ABC transporter MID00_06540 PF00528 Binding-protein-dependent transport system inner membrane component MID00_06555 PF13458 Periplasmic binding protein MID00_06570 PF00005 ABC transporter MID00_06570 PF12399 Branched-chain amino acid ATP-binding cassette transporter MID00_06575 PF00005 ABC transporter MID00_06585 PF00501 AMP-binding enzyme MID00_06585 PF13193 AMP-binding enzyme C-terminal domain MID00_06590 PF00857 Isochorismatase family MID00_06590 PF00550 Phosphopantetheine attachment site MID00_06595 PF00975 Thioesterase domain MID00_06595 PF00550 Phosphopantetheine attachment site MID00_06595 PF00668 Condensation domain MID00_06595 PF13193 AMP-binding enzyme C-terminal domain MID00_06595 PF00501 AMP-binding enzyme MID00_06600 PF05977 Transmembrane secretion effector MID00_06610 PF00425 chorismate binding enzyme MID00_06615 PF00550 Phosphopantetheine attachment site MID00_06615 PF00857 Isochorismatase family MID00_06620 PF00106 short chain dehydrogenase MID00_06630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID00_06630 PF00672 HAMP domain MID00_06630 PF17200 Single Cache domain 2 MID00_06640 PF13098 Thioredoxin-like domain MID00_06640 PF10411 Disulfide bond isomerase protein N-terminus MID00_06645 PF01494 FAD binding domain MID00_06650 PF06725 3D domain MID00_06650 PF03562 MltA specific insert domain MID00_06655 PF04379 ApaG domain MID00_06660 PF00834 Ribulose-phosphate 3 epimerase family MID00_06670 PF13419 Haloacid dehalogenase-like hydrolase MID00_06675 PF00425 chorismate binding enzyme MID00_06675 PF04715 Anthranilate synthase component I, N terminal region MID00_06680 PF00117 Glutamine amidotransferase class-I MID00_06685 PF02885 Glycosyl transferase family, helical bundle domain MID00_06685 PF00591 Glycosyl transferase family, a/b domain MID00_06690 PF00218 Indole-3-glycerol phosphate synthase MID00_06715 PF02036 SCP-2 sterol transfer family MID00_06725 PF01136 Peptidase family U32 MID00_06770 PF03167 Uracil DNA glycosylase superfamily MID00_06780 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family MID00_06780 PF04055 Radical SAM superfamily MID00_06785 PF00378 Enoyl-CoA hydratase/isomerase MID00_06790 PF03099 Biotin/lipoate A/B protein ligase family MID00_06795 PF04359 Protein of unknown function (DUF493) MID00_06800 PF01063 Amino-transferase class IV MID00_06805 PF07943 Penicillin-binding protein 5, C-terminal domain MID00_06805 PF00768 D-alanyl-D-alanine carboxypeptidase MID00_06815 PF02237 Biotin protein ligase C terminal domain MID00_06815 PF03099 Biotin/lipoate A/B protein ligase family MID00_06820 PF03309 Type III pantothenate kinase MID00_06825 PF00483 Nucleotidyl transferase MID00_06830 PF00313 'Cold-shock' DNA-binding domain MID00_06835 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) MID00_06835 PF00534 Glycosyl transferases group 1 MID00_06840 PF01075 Glycosyltransferase family 9 (heptosyltransferase) MID00_06845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_06845 PF03466 LysR substrate binding domain MID00_06850 PF07286 Protein of unknown function (DUF1445) MID00_06865 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID00_06875 PF01425 Amidase MID00_06880 PF00892 EamA-like transporter family MID00_06885 PF02911 Formyl transferase, C-terminal domain MID00_06885 PF00551 Formyl transferase MID00_06890 PF01327 Polypeptide deformylase MID00_06895 PF17782 DprA winged helix domain MID00_06895 PF02481 DNA recombination-mediator protein A MID00_06900 PF00682 HMGL-like MID00_06910 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID00_06920 PF00005 ABC transporter MID00_06935 PF02653 Branched-chain amino acid transport system / permease component MID00_06940 PF12399 Branched-chain amino acid ATP-binding cassette transporter MID00_06940 PF00005 ABC transporter MID00_06945 PF00501 AMP-binding enzyme MID00_06955 PF03401 Tripartite tricarboxylate transporter family receptor MID00_06960 PF01168 Alanine racemase, N-terminal domain MID00_06965 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MID00_06965 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MID00_06970 PF00005 ABC transporter MID00_06975 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID00_06980 PF00528 Binding-protein-dependent transport system inner membrane component MID00_06985 PF00528 Binding-protein-dependent transport system inner membrane component MID00_06990 PF17763 Glutaminase/Asparaginase C-terminal domain MID00_06990 PF00710 Asparaginase, N-terminal MID00_06995 PF00849 RNA pseudouridylate synthase MID00_07005 PF16868 NMT1-like family MID00_07015 PF00708 Acylphosphatase MID00_07020 PF00563 EAL domain MID00_07020 PF00990 Diguanylate cyclase, GGDEF domain MID00_07020 PF03707 Bacterial signalling protein N terminal repeat MID00_07030 PF01381 Helix-turn-helix MID00_07035 PF02646 RmuC family MID00_07045 PF01266 FAD dependent oxidoreductase MID00_07050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_07050 PF03466 LysR substrate binding domain MID00_07055 PF00392 Bacterial regulatory proteins, gntR family MID00_07055 PF07729 FCD domain MID00_07060 PF03401 Tripartite tricarboxylate transporter family receptor MID00_07065 PF00501 AMP-binding enzyme MID00_07065 PF13193 AMP-binding enzyme C-terminal domain MID00_07075 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID00_07085 PF03480 Bacterial extracellular solute-binding protein, family 7 MID00_07090 PF13419 Haloacid dehalogenase-like hydrolase MID00_07110 PF00005 ABC transporter MID00_07115 PF02405 Permease MlaE MID00_07125 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID00_07145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_07145 PF03466 LysR substrate binding domain MID00_07155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_07155 PF03466 LysR substrate binding domain MID00_07160 PF01425 Amidase MID00_07175 PF10396 GTP-binding protein TrmE N-terminus MID00_07175 PF01926 50S ribosome-binding GTPase MID00_07175 PF12631 MnmE helical domain MID00_07190 PF04536 TPM domain MID00_07200 PF00270 DEAD/DEAH box helicase MID00_07200 PF00271 Helicase conserved C-terminal domain MID00_07205 PF01810 LysE type translocator MID00_07210 PF00009 Elongation factor Tu GTP binding domain MID00_07210 PF03144 Elongation factor Tu domain 2 MID00_07210 PF16658 Class II release factor RF3, C-terminal domain MID00_07220 PF00210 Ferritin-like domain MID00_07230 PF03466 LysR substrate binding domain MID00_07230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_07235 PF00857 Isochorismatase family MID00_07240 PF03480 Bacterial extracellular solute-binding protein, family 7 MID00_07250 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID00_07250 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MID00_07255 PF02515 CoA-transferase family III MID00_07260 PF00682 HMGL-like MID00_07265 PF00330 Aconitase family (aconitate hydratase) MID00_07270 PF00694 Aconitase C-terminal domain MID00_07275 PF04552 Sigma-54, DNA binding domain MID00_07275 PF04963 Sigma-54 factor, core binding domain MID00_07275 PF00309 Sigma-54 factor, Activator interacting domain (AID) MID00_07290 PF08502 LeuA allosteric (dimerisation) domain MID00_07290 PF00682 HMGL-like MID00_07315 PF03485 Arginyl tRNA synthetase N terminal domain MID00_07315 PF05746 DALR anticodon binding domain MID00_07315 PF00750 tRNA synthetases class I (R) MID00_07325 PF01323 DSBA-like thioredoxin domain MID00_07325 PF00085 Thioredoxin MID00_07335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_07335 PF03466 LysR substrate binding domain MID00_07340 PF01053 Cys/Met metabolism PLP-dependent enzyme MID00_07350 PF00376 MerR family regulatory protein MID00_07350 PF09278 MerR, DNA binding MID00_07355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MID00_07355 PF02770 Acyl-CoA dehydrogenase, middle domain MID00_07355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID00_07360 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) MID00_07365 PF00108 Thiolase, N-terminal domain MID00_07365 PF02803 Thiolase, C-terminal domain MID00_07370 PF01039 Carboxyl transferase domain MID00_07375 PF00289 Biotin carboxylase, N-terminal domain MID00_07375 PF00364 Biotin-requiring enzyme MID00_07375 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MID00_07375 PF02785 Biotin carboxylase C-terminal domain MID00_07380 PF00749 tRNA synthetases class I (E and Q), catalytic domain MID00_07385 PF04361 Protein of unknown function (DUF494) MID00_07395 PF01751 Toprim domain MID00_07395 PF01131 DNA topoisomerase MID00_07405 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID00_07415 PF03480 Bacterial extracellular solute-binding protein, family 7 MID00_07420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MID00_07420 PF00205 Thiamine pyrophosphate enzyme, central domain MID00_07420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MID00_07435 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID00_07440 PF03480 Bacterial extracellular solute-binding protein, family 7 MID00_07450 PF01048 Phosphorylase superfamily MID00_07450 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus MID00_07455 PF01274 Malate synthase MID00_07465 PF00528 Binding-protein-dependent transport system inner membrane component MID00_07470 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain MID00_07470 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain MID00_07480 PF12833 Helix-turn-helix domain MID00_07480 PF14525 AraC-binding-like domain MID00_07490 PF03358 NADPH-dependent FMN reductase MID00_07495 PF00296 Luciferase-like monooxygenase MID00_07515 PF02796 Helix-turn-helix domain of resolvase MID00_07515 PF00239 Resolvase, N terminal domain MID00_07525 PF03180 NLPA lipoprotein MID00_07530 PF00296 Luciferase-like monooxygenase MID00_07535 PF03180 NLPA lipoprotein MID00_07540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID00_07540 PF02770 Acyl-CoA dehydrogenase, middle domain MID00_07540 PF08028 Acyl-CoA dehydrogenase, C-terminal domain MID00_07545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID00_07545 PF08028 Acyl-CoA dehydrogenase, C-terminal domain MID00_07550 PF00528 Binding-protein-dependent transport system inner membrane component MID00_07555 PF09383 NIL domain MID00_07555 PF00005 ABC transporter MID00_07560 PF03180 NLPA lipoprotein MID00_07565 PF03180 NLPA lipoprotein MID00_07570 PF00202 Aminotransferase class-III MID00_07575 PF00817 impB/mucB/samB family MID00_07575 PF11799 impB/mucB/samB family C-terminal domain MID00_07580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MID00_07585 PF00528 Binding-protein-dependent transport system inner membrane component MID00_07590 PF12911 N-terminal TM domain of oligopeptide transport permease C MID00_07590 PF00528 Binding-protein-dependent transport system inner membrane component MID00_07595 PF00005 ABC transporter MID00_07595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID00_07600 PF00005 ABC transporter MID00_07600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID00_07605 PF08281 Sigma-70, region 4 MID00_07605 PF04542 Sigma-70 region 2 MID00_07615 PF00593 TonB dependent receptor MID00_07615 PF07715 TonB-dependent Receptor Plug Domain MID00_07620 PF02261 Aspartate decarboxylase MID00_07630 PF00005 ABC transporter MID00_07635 PF01613 Flavin reductase like domain MID00_07640 PF12833 Helix-turn-helix domain MID00_07640 PF14525 AraC-binding-like domain MID00_07650 PF01613 Flavin reductase like domain MID00_07680 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID00_07720 PF13193 AMP-binding enzyme C-terminal domain MID00_07720 PF00501 AMP-binding enzyme MID00_07725 PF00866 Ring hydroxylating beta subunit MID00_07730 PF00355 Rieske [2Fe-2S] domain MID00_07730 PF00848 Ring hydroxylating alpha subunit (catalytic domain) MID00_07735 PF00970 Oxidoreductase FAD-binding domain MID00_07735 PF00111 2Fe-2S iron-sulfur cluster binding domain MID00_07735 PF00175 Oxidoreductase NAD-binding domain MID00_07740 PF04199 Putative cyclase MID00_07745 PF00795 Carbon-nitrogen hydrolase MID00_07750 PF01557 Fumarylacetoacetate (FAA) hydrolase family MID00_07755 PF07883 Cupin domain MID00_07760 PF01494 FAD binding domain MID00_07770 PF12802 MarR family MID00_07785 PF01047 MarR family MID00_07795 PF00884 Sulfatase MID00_07795 PF16347 Domain of unknown function (DUF4976) MID00_07820 PF03401 Tripartite tricarboxylate transporter family receptor MID00_07825 PF07683 Cobalamin synthesis protein cobW C-terminal domain MID00_07825 PF02492 CobW/HypB/UreG, nucleotide-binding domain MID00_07835 PF00155 Aminotransferase class I and II MID00_07845 PF00005 ABC transporter MID00_07845 PF08402 TOBE domain MID00_07855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_07855 PF03466 LysR substrate binding domain MID00_07860 PF00892 EamA-like transporter family MID00_07870 PF03401 Tripartite tricarboxylate transporter family receptor MID00_07875 PF17645 Arylmalonate decarboxylase MID00_07880 PF00378 Enoyl-CoA hydratase/isomerase MID00_07885 PF00392 Bacterial regulatory proteins, gntR family MID00_07885 PF00155 Aminotransferase class I and II MID00_07890 PF00561 alpha/beta hydrolase fold MID00_07890 PF00364 Biotin-requiring enzyme MID00_07900 PF00501 AMP-binding enzyme MID00_07900 PF13193 AMP-binding enzyme C-terminal domain MID00_07905 PF00005 ABC transporter MID00_07910 PF02653 Branched-chain amino acid transport system / permease component MID00_07910 PF11862 Domain of unknown function (DUF3382) MID00_07915 PF02653 Branched-chain amino acid transport system / permease component MID00_07925 PF00155 Aminotransferase class I and II MID00_07930 PF01546 Peptidase family M20/M25/M40 MID00_07930 PF07687 Peptidase dimerisation domain MID00_07935 PF07690 Major Facilitator Superfamily MID00_07940 PF13609 Gram-negative porin MID00_07945 PF00392 Bacterial regulatory proteins, gntR family MID00_07945 PF07729 FCD domain MID00_07960 PF00849 RNA pseudouridylate synthase MID00_07960 PF01479 S4 domain MID00_07965 PF01751 Toprim domain MID00_07965 PF18053 DNA gyrase B subunit insert domain MID00_07965 PF00986 DNA gyrase B subunit, carboxyl terminus MID00_07965 PF00204 DNA gyrase B MID00_07965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_07970 PF00712 DNA polymerase III beta subunit, N-terminal domain MID00_07970 PF02767 DNA polymerase III beta subunit, central domain MID00_07970 PF02768 DNA polymerase III beta subunit, C-terminal domain MID00_07975 PF00308 Bacterial dnaA protein MID00_07975 PF08299 Bacterial dnaA protein helix-turn-helix MID00_07975 PF11638 DnaA N-terminal domain MID00_07980 PF00468 Ribosomal protein L34 MID00_07985 PF00825 Ribonuclease P MID00_07990 PF01809 Putative membrane protein insertion efficiency factor MID00_07995 PF14849 YidC periplasmic domain MID00_07995 PF02096 60Kd inner membrane protein MID00_08000 PF06628 Catalase-related immune-responsive MID00_08000 PF00199 Catalase MID00_08015 PF02423 Ornithine cyclodeaminase/mu-crystallin family MID00_08020 PF00291 Pyridoxal-phosphate dependent enzyme MID00_08025 PF07687 Peptidase dimerisation domain MID00_08025 PF01546 Peptidase family M20/M25/M40 MID00_08030 PF07883 Cupin domain MID00_08030 PF01381 Helix-turn-helix MID00_08035 PF12631 MnmE helical domain MID00_08035 PF10396 GTP-binding protein TrmE N-terminus MID00_08035 PF01926 50S ribosome-binding GTPase MID00_08070 PF02567 Phenazine biosynthesis-like protein MID00_08080 PF13291 ACT domain MID00_08080 PF00291 Pyridoxal-phosphate dependent enzyme MID00_08090 PF02666 Phosphatidylserine decarboxylase MID00_08095 PF00990 Diguanylate cyclase, GGDEF domain MID00_08100 PF00149 Calcineurin-like phosphoesterase MID00_08110 PF00155 Aminotransferase class I and II MID00_08115 PF01134 Glucose inhibited division protein A MID00_08115 PF13932 GidA associated domain MID00_08120 PF02527 rRNA small subunit methyltransferase G MID00_08125 PF13614 AAA domain MID00_08130 PF02195 ParB-like nuclease domain MID00_08130 PF17762 HTH domain found in ParB protein MID00_08155 PF03143 Elongation factor Tu C-terminal domain MID00_08155 PF03144 Elongation factor Tu domain 2 MID00_08155 PF00009 Elongation factor Tu GTP binding domain MID00_08170 PF00467 KOW motif MID00_08170 PF02357 Transcription termination factor nusG MID00_08175 PF00298 Ribosomal protein L11, RNA binding domain MID00_08175 PF03946 Ribosomal protein L11, N-terminal domain MID00_08180 PF00687 Ribosomal protein L1p/L10e family MID00_08185 PF00466 Ribosomal protein L10 MID00_08190 PF16320 Ribosomal protein L7/L12 dimerisation domain MID00_08190 PF00542 Ribosomal protein L7/L12 C-terminal domain MID00_08195 PF10385 RNA polymerase beta subunit external 1 domain MID00_08195 PF00562 RNA polymerase Rpb2, domain 6 MID00_08195 PF04560 RNA polymerase Rpb2, domain 7 MID00_08195 PF04563 RNA polymerase beta subunit MID00_08195 PF04561 RNA polymerase Rpb2, domain 2 MID00_08195 PF04565 RNA polymerase Rpb2, domain 3 MID00_08200 PF04997 RNA polymerase Rpb1, domain 1 MID00_08200 PF00623 RNA polymerase Rpb1, domain 2 MID00_08200 PF04983 RNA polymerase Rpb1, domain 3 MID00_08200 PF05000 RNA polymerase Rpb1, domain 4 MID00_08200 PF04998 RNA polymerase Rpb1, domain 5 MID00_08205 PF00127 Copper binding proteins, plastocyanin/azurin family MID00_08220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_08220 PF00512 His Kinase A (phospho-acceptor) domain MID00_08220 PF00672 HAMP domain MID00_08230 PF00072 Response regulator receiver domain MID00_08230 PF00486 Transcriptional regulatory protein, C terminal MID00_08235 PF00164 Ribosomal protein S12/S23 MID00_08240 PF00177 Ribosomal protein S7p/S5e MID00_08245 PF00679 Elongation factor G C-terminus MID00_08245 PF03144 Elongation factor Tu domain 2 MID00_08245 PF00009 Elongation factor Tu GTP binding domain MID00_08245 PF03764 Elongation factor G, domain IV MID00_08245 PF14492 Elongation Factor G, domain II MID00_08250 PF03144 Elongation factor Tu domain 2 MID00_08250 PF03143 Elongation factor Tu C-terminal domain MID00_08250 PF00009 Elongation factor Tu GTP binding domain MID00_08255 PF00338 Ribosomal protein S10p/S20e MID00_08260 PF00528 Binding-protein-dependent transport system inner membrane component MID00_08265 PF00571 CBS domain MID00_08265 PF00005 ABC transporter MID00_08270 PF00297 Ribosomal protein L3 MID00_08275 PF00573 Ribosomal protein L4/L1 family MID00_08280 PF00276 Ribosomal protein L23 MID00_08285 PF00181 Ribosomal Proteins L2, RNA binding domain MID00_08285 PF03947 Ribosomal Proteins L2, C-terminal domain MID00_08290 PF00203 Ribosomal protein S19 MID00_08295 PF00237 Ribosomal protein L22p/L17e MID00_08300 PF00189 Ribosomal protein S3, C-terminal domain MID00_08300 PF07650 KH domain MID00_08305 PF00252 Ribosomal protein L16p/L10e MID00_08310 PF00831 Ribosomal L29 protein MID00_08315 PF00366 Ribosomal protein S17 MID00_08320 PF12833 Helix-turn-helix domain MID00_08320 PF12852 Cupin MID00_08330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID00_08330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MID00_08330 PF02770 Acyl-CoA dehydrogenase, middle domain MID00_08335 PF00005 ABC transporter MID00_08345 PF00528 Binding-protein-dependent transport system inner membrane component MID00_08350 PF10414 Sirohaem synthase dimerisation region MID00_08350 PF14824 Sirohaem biosynthesis protein central MID00_08350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MID00_08355 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MID00_08355 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MID00_08360 PF00258 Flavodoxin MID00_08360 PF00667 FAD binding domain MID00_08360 PF00175 Oxidoreductase NAD-binding domain MID00_08365 PF00501 AMP-binding enzyme MID00_08365 PF13193 AMP-binding enzyme C-terminal domain MID00_08380 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) MID00_08385 PF00378 Enoyl-CoA hydratase/isomerase MID00_08385 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MID00_08385 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MID00_08390 PF00108 Thiolase, N-terminal domain MID00_08390 PF02803 Thiolase, C-terminal domain MID00_08395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MID00_08395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID00_08395 PF09317 Domain of unknown function (DUF1974) MID00_08395 PF02770 Acyl-CoA dehydrogenase, middle domain MID00_08405 PF00171 Aldehyde dehydrogenase family MID00_08410 PF02321 Outer membrane efflux protein MID00_08420 PF00664 ABC transporter transmembrane region MID00_08420 PF03412 Peptidase C39 family MID00_08420 PF00005 ABC transporter MID00_08425 PF00529 HlyD membrane-fusion protein of T1SS MID00_08455 PF00238 Ribosomal protein L14p/L23e MID00_08460 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 MID00_08465 PF00281 Ribosomal protein L5 MID00_08465 PF00673 ribosomal L5P family C-terminus MID00_08470 PF00253 Ribosomal protein S14p/S29e MID00_08475 PF00410 Ribosomal protein S8 MID00_08480 PF00347 Ribosomal protein L6 MID00_08485 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast MID00_08490 PF00333 Ribosomal protein S5, N-terminal domain MID00_08490 PF03719 Ribosomal protein S5, C-terminal domain MID00_08495 PF00327 Ribosomal protein L30p/L7e MID00_08500 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A MID00_08505 PF00344 SecY translocase MID00_08510 PF01176 Translation initiation factor 1A / IF-1 MID00_08515 PF00444 Ribosomal protein L36 MID00_08520 PF00416 Ribosomal protein S13/S18 MID00_08525 PF00411 Ribosomal protein S11 MID00_08530 PF00163 Ribosomal protein S4/S9 N-terminal domain MID00_08530 PF01479 S4 domain MID00_08535 PF01000 RNA polymerase Rpb3/RpoA insert domain MID00_08535 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain MID00_08535 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain MID00_08540 PF01196 Ribosomal protein L17 MID00_08545 PF00296 Luciferase-like monooxygenase MID00_08555 PF12833 Helix-turn-helix domain MID00_08555 PF14525 AraC-binding-like domain MID00_08560 PF03091 CutA1 divalent ion tolerance protein MID00_08565 PF02683 Cytochrome C biogenesis protein transmembrane region MID00_08565 PF11412 Disulphide bond corrector protein DsbC MID00_08570 PF00490 Delta-aminolevulinic acid dehydratase MID00_08575 PF01926 50S ribosome-binding GTPase MID00_08580 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID00_08585 PF05140 ResB-like family MID00_08590 PF01578 Cytochrome C assembly protein MID00_08595 PF00563 EAL domain MID00_08595 PF00990 Diguanylate cyclase, GGDEF domain MID00_08595 PF08448 PAS fold MID00_08600 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MID00_08600 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MID00_08610 PF00912 Transglycosylase MID00_08610 PF00905 Penicillin binding protein transpeptidase domain MID00_08610 PF17092 Penicillin-binding protein OB-like domain MID00_08615 PF01202 Shikimate kinase MID00_08620 PF01761 3-dehydroquinate synthase MID00_08625 PF01966 HD domain MID00_08625 PF13286 Phosphohydrolase-associated domain MID00_08630 PF17755 UvrA DNA-binding domain MID00_08630 PF17760 UvrA interaction domain MID00_08635 PF07690 Major Facilitator Superfamily MID00_08640 PF00436 Single-strand binding protein family MID00_08645 PF00392 Bacterial regulatory proteins, gntR family MID00_08645 PF07729 FCD domain MID00_08650 PF01557 Fumarylacetoacetate (FAA) hydrolase family MID00_08655 PF03401 Tripartite tricarboxylate transporter family receptor MID00_08660 PF01042 Endoribonuclease L-PSP MID00_08665 PF07690 Major Facilitator Superfamily MID00_08675 PF00210 Ferritin-like domain MID00_08680 PF07690 Major Facilitator Superfamily MID00_08690 PF00392 Bacterial regulatory proteins, gntR family MID00_08690 PF07729 FCD domain MID00_08715 PF00171 Aldehyde dehydrogenase family MID00_08720 PF03928 Haem-degrading MID00_08725 PF00970 Oxidoreductase FAD-binding domain MID00_08725 PF00111 2Fe-2S iron-sulfur cluster binding domain MID00_08725 PF00175 Oxidoreductase NAD-binding domain MID00_08745 PF00970 Oxidoreductase FAD-binding domain MID00_08745 PF00111 2Fe-2S iron-sulfur cluster binding domain MID00_08745 PF00175 Oxidoreductase NAD-binding domain MID00_08750 PF02423 Ornithine cyclodeaminase/mu-crystallin family MID00_08770 PF10996 Beta-Casp domain MID00_08770 PF00753 Metallo-beta-lactamase superfamily MID00_08770 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MID00_08775 PF13350 Tyrosine phosphatase family MID00_08780 PF00155 Aminotransferase class I and II MID00_08785 PF03466 LysR substrate binding domain MID00_08785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_08790 PF00355 Rieske [2Fe-2S] domain MID00_08795 PF00970 Oxidoreductase FAD-binding domain MID00_08795 PF00042 Globin MID00_08795 PF00175 Oxidoreductase NAD-binding domain MID00_08800 PF07690 Major Facilitator Superfamily MID00_08805 PF13411 MerR HTH family regulatory protein MID00_08815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_08815 PF03466 LysR substrate binding domain MID00_08820 PF07690 Major Facilitator Superfamily MID00_08835 PF00392 Bacterial regulatory proteins, gntR family MID00_08835 PF07702 UTRA domain MID00_08840 PF17391 Urocanase N-terminal domain MID00_08840 PF01175 Urocanase Rossmann-like domain MID00_08840 PF17392 Urocanase C-terminal domain MID00_08845 PF00221 Aromatic amino acid lyase MID00_08855 PF00145 C-5 cytosine-specific DNA methylase MID00_08855 PF01381 Helix-turn-helix MID00_08865 PF01979 Amidohydrolase family MID00_08875 PF00155 Aminotransferase class I and II MID00_08880 PF01040 UbiA prenyltransferase family MID00_08900 PF01336 OB-fold nucleic acid binding domain MID00_08900 PF00152 tRNA synthetases class II (D, K and N) MID00_08900 PF02938 GAD domain MID00_08905 PF03372 Endonuclease/Exonuclease/phosphatase family MID00_08910 PF13091 PLD-like domain MID00_08915 PF00107 Zinc-binding dehydrogenase MID00_08915 PF08240 Alcohol dehydrogenase GroES-like domain MID00_08920 PF00756 Putative esterase MID00_08925 PF00140 Sigma-70 factor, region 1.2 MID00_08925 PF04542 Sigma-70 region 2 MID00_08925 PF04545 Sigma-70, region 4 MID00_08930 PF07715 TonB-dependent Receptor Plug Domain MID00_08930 PF00593 TonB dependent receptor MID00_08940 PF00999 Sodium/hydrogen exchanger family MID00_08945 PF01040 UbiA prenyltransferase family MID00_08950 PF02628 Cytochrome oxidase assembly protein MID00_08970 PF00510 Cytochrome c oxidase subunit III MID00_08985 PF00115 Cytochrome C and Quinol oxidase polypeptide I MID00_08990 PF00116 Cytochrome C oxidase subunit II, periplasmic domain MID00_08990 PF02790 Cytochrome C oxidase subunit II, transmembrane domain MID00_09005 PF00132 Bacterial transferase hexapeptide (six repeats) MID00_09005 PF14602 Hexapeptide repeat of succinyl-transferase MID00_09005 PF12804 MobA-like NTP transferase domain MID00_09010 PF00534 Glycosyl transferases group 1 MID00_09010 PF00862 Sucrose synthase MID00_09015 PF01037 Lrp/AsnC ligand binding domain MID00_09015 PF13404 AsnC-type helix-turn-helix domain MID00_09020 PF01380 SIS domain MID00_09025 PF08281 Sigma-70, region 4 MID00_09025 PF04542 Sigma-70 region 2 MID00_09035 PF07715 TonB-dependent Receptor Plug Domain MID00_09035 PF00593 TonB dependent receptor MID00_09050 PF00465 Iron-containing alcohol dehydrogenase MID00_09060 PF03466 LysR substrate binding domain MID00_09060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_09065 PF13419 Haloacid dehalogenase-like hydrolase MID00_09095 PF00158 Sigma-54 interaction domain MID00_09095 PF02954 Bacterial regulatory protein, Fis family MID00_09095 PF01590 GAF domain MID00_09100 PF00743 Flavin-binding monooxygenase-like MID00_09105 PF04972 BON domain MID00_09110 PF05532 CsbD-like MID00_09115 PF03466 LysR substrate binding domain MID00_09115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_09120 PF02678 Pirin MID00_09120 PF05726 Pirin C-terminal cupin domain MID00_09125 PF00857 Isochorismatase family MID00_09130 PF05726 Pirin C-terminal cupin domain MID00_09130 PF02678 Pirin MID00_09140 PF00083 Sugar (and other) transporter MID00_09140 PF08946 Osmosensory transporter coiled coil MID00_09145 PF03466 LysR substrate binding domain MID00_09145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_09150 PF07969 Amidohydrolase family MID00_09165 PF00795 Carbon-nitrogen hydrolase MID00_09175 PF13847 Methyltransferase domain MID00_09180 PF00990 Diguanylate cyclase, GGDEF domain MID00_09180 PF07694 5TMR of 5TMR-LYT MID00_09185 PF00694 Aconitase C-terminal domain MID00_09185 PF00330 Aconitase family (aconitate hydratase) MID00_09190 PF07690 Major Facilitator Superfamily MID00_09195 PF00248 Aldo/keto reductase family MID00_09200 PF02548 Ketopantoate hydroxymethyltransferase MID00_09205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_09205 PF03466 LysR substrate binding domain MID00_09220 PF03301 Tryptophan 2,3-dioxygenase MID00_09230 PF13404 AsnC-type helix-turn-helix domain MID00_09230 PF01037 Lrp/AsnC ligand binding domain MID00_09235 PF00392 Bacterial regulatory proteins, gntR family MID00_09235 PF07729 FCD domain MID00_09240 PF00920 Dehydratase family MID00_09245 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MID00_09245 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MID00_09255 PF01370 NAD dependent epimerase/dehydratase family MID00_09260 PF03480 Bacterial extracellular solute-binding protein, family 7 MID00_09270 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID00_09280 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MID00_09280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MID00_09285 PF01070 FMN-dependent dehydrogenase MID00_09305 PF00528 Binding-protein-dependent transport system inner membrane component MID00_09310 PF00528 Binding-protein-dependent transport system inner membrane component MID00_09315 PF04386 Stringent starvation protein B MID00_09320 PF00043 Glutathione S-transferase, C-terminal domain MID00_09320 PF02798 Glutathione S-transferase, N-terminal domain MID00_09325 PF02167 Cytochrome C1 family MID00_09330 PF00032 Cytochrome b(C-terminal)/b6/petD MID00_09330 PF00033 Cytochrome b/b6/petB MID00_09335 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal MID00_09335 PF00355 Rieske [2Fe-2S] domain MID00_09340 PF01741 Large-conductance mechanosensitive channel, MscL MID00_09345 PF01784 NIF3 (NGG1p interacting factor 3) MID00_09350 PF13180 PDZ domain MID00_09355 PF00902 Sec-independent protein translocase protein (TatC) MID00_09360 PF02416 mttA/Hcf106 family MID00_09365 PF02416 mttA/Hcf106 family MID00_09370 PF01230 HIT domain MID00_09375 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase MID00_09380 PF01502 Phosphoribosyl-AMP cyclohydrolase MID00_09385 PF00977 Histidine biosynthesis protein MID00_09390 PF00977 Histidine biosynthesis protein MID00_09395 PF00117 Glutamine amidotransferase class-I MID00_09400 PF00475 Imidazoleglycerol-phosphate dehydratase MID00_09405 PF00815 Histidinol dehydrogenase MID00_09410 PF01634 ATP phosphoribosyltransferase MID00_09415 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MID00_09425 PF01061 ABC-2 type transporter MID00_09430 PF00005 ABC transporter MID00_09445 PF02470 MlaD protein MID00_09450 PF02405 Permease MlaE MID00_09455 PF00005 ABC transporter MID00_09470 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MID00_09470 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MID00_09470 PF00378 Enoyl-CoA hydratase/isomerase MID00_09475 PF02803 Thiolase, C-terminal domain MID00_09475 PF00108 Thiolase, N-terminal domain MID00_09485 PF06715 Gp5 C-terminal repeat (3 copies) MID00_09485 PF04717 Type VI secretion system, phage-baseplate injector MID00_09520 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 MID00_09525 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath MID00_09535 PF04965 Gene 25-like lysozyme MID00_09540 PF05947 Type VI secretion system, TssF MID00_09565 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE MID00_09570 PF00691 OmpA family MID00_09570 PF13488 Glycine zipper MID00_09575 PF06761 Intracellular multiplication and human macrophage-killing MID00_09575 PF14331 ImcF-related N-terminal domain MID00_09575 PF06744 Type VI secretion protein IcmF C-terminal MID00_09590 PF00892 EamA-like transporter family MID00_09595 PF00155 Aminotransferase class I and II MID00_09595 PF00392 Bacterial regulatory proteins, gntR family MID00_09600 PF00892 EamA-like transporter family MID00_09605 PF00860 Permease family MID00_09610 PF14765 Polyketide synthase dehydratase MID00_09610 PF00550 Phosphopantetheine attachment site MID00_09610 PF02801 Beta-ketoacyl synthase, C-terminal domain MID00_09610 PF08659 KR domain MID00_09610 PF16197 Ketoacyl-synthetase C-terminal extension MID00_09610 PF08240 Alcohol dehydrogenase GroES-like domain MID00_09610 PF00698 Acyl transferase domain MID00_09610 PF00109 Beta-ketoacyl synthase, N-terminal domain MID00_09615 PF14765 Polyketide synthase dehydratase MID00_09615 PF00698 Acyl transferase domain MID00_09615 PF08240 Alcohol dehydrogenase GroES-like domain MID00_09615 PF16197 Ketoacyl-synthetase C-terminal extension MID00_09615 PF00109 Beta-ketoacyl synthase, N-terminal domain MID00_09615 PF02801 Beta-ketoacyl synthase, C-terminal domain MID00_09615 PF08659 KR domain MID00_09615 PF00550 Phosphopantetheine attachment site MID00_09620 PF00155 Aminotransferase class I and II MID00_09625 PF02563 Polysaccharide biosynthesis/export protein MID00_09630 PF01061 ABC-2 type transporter MID00_09635 PF00005 ABC transporter MID00_09650 PF02350 UDP-N-acetylglucosamine 2-epimerase MID00_09655 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MID00_09655 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MID00_09655 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MID00_09660 PF00534 Glycosyl transferases group 1 MID00_09680 PF08323 Starch synthase catalytic domain MID00_09680 PF00534 Glycosyl transferases group 1 MID00_09695 PF00106 short chain dehydrogenase MID00_09715 PF00342 Phosphoglucose isomerase MID00_09730 PF12679 ABC-2 family transporter protein MID00_09735 PF00005 ABC transporter MID00_09740 PF05048 Periplasmic copper-binding protein (NosD) MID00_09745 PF13473 Cupredoxin-like domain MID00_09745 PF18764 Nitrous oxide reductase propeller repeat MID00_09745 PF18793 Nitrous oxide reductase propeller repeat 2 MID00_09750 PF12801 4Fe-4S binding domain MID00_09750 PF04205 FMN-binding domain MID00_09760 PF00586 AIR synthase related protein, N-terminal domain MID00_09760 PF02769 AIR synthase related protein, C-terminal domain MID00_09770 PF00593 TonB dependent receptor MID00_09770 PF07715 TonB-dependent Receptor Plug Domain MID00_09775 PF07715 TonB-dependent Receptor Plug Domain MID00_09775 PF00593 TonB dependent receptor MID00_09780 PF03401 Tripartite tricarboxylate transporter family receptor MID00_09790 PF00596 Class II Aldolase and Adducin N-terminal domain MID00_09795 PF01381 Helix-turn-helix MID00_09805 PF09106 Elongation factor SelB, winged helix MID00_09805 PF09107 Elongation factor SelB, winged helix MID00_09805 PF03144 Elongation factor Tu domain 2 MID00_09805 PF00009 Elongation factor Tu GTP binding domain MID00_09810 PF12390 Selenocysteine synthase N terminal MID00_09810 PF03841 L-seryl-tRNA selenium transferase MID00_09815 PF04216 Protein involved in formate dehydrogenase formation MID00_09820 PF01292 Prokaryotic cytochrome b561 MID00_09825 PF13247 4Fe-4S dicluster domain MID00_09825 PF09163 Formate dehydrogenase N, transmembrane MID00_09840 PF00795 Carbon-nitrogen hydrolase MID00_09845 PF08946 Osmosensory transporter coiled coil MID00_09845 PF00083 Sugar (and other) transporter MID00_09850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_09850 PF03466 LysR substrate binding domain MID00_09855 PF00072 Response regulator receiver domain MID00_09855 PF00486 Transcriptional regulatory protein, C terminal MID00_09860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_09860 PF00672 HAMP domain MID00_09860 PF00512 His Kinase A (phospho-acceptor) domain MID00_09875 PF01970 Tripartite tricarboxylate transporter TctA family MID00_09880 PF05145 Transition state regulatory protein AbrB MID00_09890 PF00080 Copper/zinc superoxide dismutase (SODC) MID00_09900 PF00398 Ribosomal RNA adenine dimethylase MID00_09915 PF01618 MotA/TolQ/ExbB proton channel family MID00_09920 PF02472 Biopolymer transport protein ExbD/TolR MID00_09985 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain MID00_09985 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain MID00_09985 PF01488 Shikimate / quinate 5-dehydrogenase MID00_09990 PF00472 RF-1 domain MID00_09990 PF03462 PCRF domain MID00_09995 PF05175 Methyltransferase small domain MID00_09995 PF17827 PrmC N-terminal domain MID00_10000 PF00462 Glutaredoxin MID00_10005 PF02441 Flavoprotein MID00_10010 PF01171 PP-loop family MID00_10025 PF00378 Enoyl-CoA hydratase/isomerase MID00_10035 PF00119 ATP synthase A chain MID00_10040 PF00137 ATP synthase subunit C MID00_10045 PF00430 ATP synthase B/B' CF(0) MID00_10050 PF00213 ATP synthase delta (OSCP) subunit MID00_10055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MID00_10055 PF02874 ATP synthase alpha/beta family, beta-barrel domain MID00_10055 PF00306 ATP synthase alpha/beta chain, C terminal domain MID00_10060 PF00231 ATP synthase MID00_10065 PF02874 ATP synthase alpha/beta family, beta-barrel domain MID00_10065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MID00_10070 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MID00_10075 PF04321 RmlD substrate binding domain MID00_10080 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase MID00_10085 PF00483 Nucleotidyl transferase MID00_10090 PF16363 GDP-mannose 4,6 dehydratase MID00_10100 PF14667 Polysaccharide biosynthesis C-terminal domain MID00_10100 PF01943 Polysaccharide biosynthesis protein MID00_10115 PF00535 Glycosyl transferase family 2 MID00_10120 PF02397 Bacterial sugar transferase MID00_10135 PF00528 Binding-protein-dependent transport system inner membrane component MID00_10140 PF00005 ABC transporter MID00_10145 PF03328 HpcH/HpaI aldolase/citrate lyase family MID00_10150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_10150 PF03466 LysR substrate binding domain MID00_10155 PF17645 Arylmalonate decarboxylase MID00_10160 PF16363 GDP-mannose 4,6 dehydratase MID00_10165 PF00132 Bacterial transferase hexapeptide (six repeats) MID00_10170 PF00919 Uncharacterized protein family UPF0004 MID00_10170 PF18693 TRAM domain MID00_10170 PF04055 Radical SAM superfamily MID00_10175 PF01029 NusB family MID00_10175 PF01189 16S rRNA methyltransferase RsmB/F MID00_10185 PF00672 HAMP domain MID00_10185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_10190 PF02954 Bacterial regulatory protein, Fis family MID00_10190 PF00158 Sigma-54 interaction domain MID00_10190 PF00072 Response regulator receiver domain MID00_10195 PF00885 6,7-dimethyl-8-ribityllumazine synthase MID00_10200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_10200 PF00512 His Kinase A (phospho-acceptor) domain MID00_10205 PF00072 Response regulator receiver domain MID00_10205 PF00486 Transcriptional regulatory protein, C terminal MID00_10210 PF07715 TonB-dependent Receptor Plug Domain MID00_10210 PF00593 TonB dependent receptor MID00_10215 PF08241 Methyltransferase domain MID00_10220 PF00156 Phosphoribosyl transferase domain MID00_10225 PF00588 SpoU rRNA Methylase family MID00_10230 PF03401 Tripartite tricarboxylate transporter family receptor MID00_10235 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus MID00_10235 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus MID00_10240 PF02556 Preprotein translocase subunit SecB MID00_10245 PF00462 Glutaredoxin MID00_10250 PF00581 Rhodanese-like domain MID00_10255 PF00300 Histidine phosphatase superfamily (branch 1) MID00_10260 PF01551 Peptidase family M23 MID00_10265 PF13180 PDZ domain MID00_10265 PF03572 Peptidase family S41 MID00_10270 PF00899 ThiF family MID00_10275 PF12833 Helix-turn-helix domain MID00_10280 PF00171 Aldehyde dehydrogenase family MID00_10290 PF00696 Amino acid kinase family MID00_10295 PF00578 AhpC/TSA family MID00_10305 PF13580 SIS domain MID00_10310 PF02021 Uncharacterised protein family UPF0102 MID00_10315 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MID00_10320 PF03330 Lytic transglycolase MID00_10320 PF05036 Sporulation related domain MID00_10325 PF03668 P-loop ATPase protein family MID00_10330 PF07475 HPr Serine kinase C-terminal domain MID00_10330 PF02603 HPr Serine kinase N terminus MID00_10335 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MID00_10340 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein MID00_10345 PF00005 ABC transporter MID00_10365 PF00571 CBS domain MID00_10365 PF01380 SIS domain MID00_10375 PF01654 Cytochrome bd terminal oxidase subunit I MID00_10380 PF02322 Cytochrome bd terminal oxidase subunit II MID00_10385 PF08173 Membrane bound YbgT-like protein MID00_10390 PF00664 ABC transporter transmembrane region MID00_10390 PF00005 ABC transporter MID00_10395 PF00664 ABC transporter transmembrane region MID00_10395 PF00005 ABC transporter MID00_10400 PF00156 Phosphoribosyl transferase domain MID00_10405 PF03797 Autotransporter beta-domain MID00_10405 PF00082 Subtilase family MID00_10410 PF00082 Subtilase family MID00_10410 PF03797 Autotransporter beta-domain MID00_10425 PF09335 SNARE associated Golgi protein MID00_10430 PF00291 Pyridoxal-phosphate dependent enzyme MID00_10430 PF00585 C-terminal regulatory domain of Threonine dehydratase MID00_10435 PF02626 Carboxyltransferase domain, subdomain A and B MID00_10440 PF02682 Carboxyltransferase domain, subdomain C and D MID00_10450 PF00512 His Kinase A (phospho-acceptor) domain MID00_10450 PF00989 PAS fold MID00_10450 PF11808 Phosphate regulon sensor protein PhoR MID00_10450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_10455 PF00072 Response regulator receiver domain MID00_10455 PF00486 Transcriptional regulatory protein, C terminal MID00_10460 PF01209 ubiE/COQ5 methyltransferase family MID00_10475 PF03109 ABC1 family MID00_10485 PF01467 Cytidylyltransferase-like MID00_10490 PF02321 Outer membrane efflux protein MID00_10500 PF01048 Phosphorylase superfamily MID00_10505 PF08543 Phosphomethylpyrimidine kinase MID00_10510 PF05690 Thiazole biosynthesis protein ThiG MID00_10525 PF01544 CorA-like Mg2+ transporter protein MID00_10535 PF01544 CorA-like Mg2+ transporter protein MID00_10545 PF13609 Gram-negative porin MID00_10555 PF08281 Sigma-70, region 4 MID00_10555 PF04542 Sigma-70 region 2 MID00_10565 PF00593 TonB dependent receptor MID00_10565 PF07715 TonB-dependent Receptor Plug Domain MID00_10565 PF07660 Secretin and TonB N terminus short domain MID00_10570 PF01497 Periplasmic binding protein MID00_10575 PF00593 TonB dependent receptor MID00_10575 PF07715 TonB-dependent Receptor Plug Domain MID00_10580 PF02310 B12 binding domain MID00_10580 PF00809 Pterin binding enzyme MID00_10580 PF02574 Homocysteine S-methyltransferase MID00_10580 PF02965 Vitamin B12 dependent methionine synthase, activation domain MID00_10580 PF02607 B12 binding domain MID00_10605 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MID00_10605 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID00_10610 PF00591 Glycosyl transferase family, a/b domain MID00_10610 PF02885 Glycosyl transferase family, helical bundle domain MID00_10615 PF00218 Indole-3-glycerol phosphate synthase MID00_10620 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MID00_10620 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MID00_10625 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region MID00_10625 PF01243 Pyridoxamine 5'-phosphate oxidase MID00_10630 PF07690 Major Facilitator Superfamily MID00_10640 PF02616 Segregation and condensation protein ScpA MID00_10645 PF02569 Pantoate-beta-alanine ligase MID00_10650 PF00196 Bacterial regulatory proteins, luxR family MID00_10650 PF00072 Response regulator receiver domain MID00_10660 PF01121 Dephospho-CoA kinase MID00_10665 PF07072 Cell division protein MID00_10670 PF13533 Biotin-lipoyl like MID00_10675 PF00873 AcrB/AcrD/AcrF family MID00_10680 PF00873 AcrB/AcrD/AcrF family MID00_10685 PF02321 Outer membrane efflux protein MID00_10690 PF17284 Spermidine synthase tetramerisation domain MID00_10695 PF00293 NUDIX domain MID00_10705 PF00348 Polyprenyl synthetase MID00_10710 PF03616 Sodium/glutamate symporter MID00_10715 PF01370 NAD dependent epimerase/dehydratase family MID00_10715 PF08338 Domain of unknown function (DUF1731) MID00_10725 PF04244 Deoxyribodipyrimidine photo-lyase-related protein MID00_10730 PF00106 short chain dehydrogenase MID00_10760 PF01593 Flavin containing amine oxidoreductase MID00_10765 PF00440 Bacterial regulatory proteins, tetR family MID00_10785 PF02954 Bacterial regulatory protein, Fis family MID00_10785 PF00158 Sigma-54 interaction domain MID00_10790 PF00115 Cytochrome C and Quinol oxidase polypeptide I MID00_10795 PF00378 Enoyl-CoA hydratase/isomerase MID00_10800 PF13380 CoA binding domain MID00_10800 PF13607 Succinyl-CoA ligase like flavodoxin domain MID00_10805 PF07690 Major Facilitator Superfamily MID00_10810 PF02770 Acyl-CoA dehydrogenase, middle domain MID00_10810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MID00_10810 PF12806 Acetyl-CoA dehydrogenase C-terminal like MID00_10810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID00_10815 PF01047 MarR family MID00_10820 PF00394 Multicopper oxidase MID00_10820 PF07732 Multicopper oxidase MID00_10835 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase MID00_10840 PF07681 DoxX MID00_10845 PF03466 LysR substrate binding domain MID00_10845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_10850 PF00156 Phosphoribosyl transferase domain MID00_10855 PF02934 GatB/GatE catalytic domain MID00_10855 PF02637 GatB domain MID00_10860 PF01425 Amidase MID00_10865 PF02686 Glu-tRNAGln amidotransferase C subunit MID00_10875 PF04085 rod shape-determining protein MreC MID00_10885 PF00905 Penicillin binding protein transpeptidase domain MID00_10885 PF03717 Penicillin-binding Protein dimerisation domain MID00_10890 PF01098 Cell cycle protein MID00_10895 PF00633 Helix-hairpin-helix motif MID00_10895 PF00730 HhH-GPD superfamily base excision DNA repair protein MID00_10895 PF14815 NUDIX domain MID00_10900 PF18075 FtsX extracellular domain MID00_10905 PF00005 ABC transporter MID00_10910 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID00_10915 PF00528 Binding-protein-dependent transport system inner membrane component MID00_10920 PF00528 Binding-protein-dependent transport system inner membrane component MID00_10925 PF00005 ABC transporter MID00_10930 PF03401 Tripartite tricarboxylate transporter family receptor MID00_10935 PF05736 OprF membrane domain MID00_10935 PF00691 OmpA family MID00_10940 PF01964 Radical SAM ThiC family MID00_10940 PF13667 ThiC-associated domain MID00_10960 PF01266 FAD dependent oxidoreductase MID00_10965 PF00696 Amino acid kinase family MID00_10965 PF01472 PUA domain MID00_10970 PF01018 GTP1/OBG MID00_10970 PF01926 50S ribosome-binding GTPase MID00_10975 PF01016 Ribosomal L27 protein MID00_10980 PF00829 Ribosomal prokaryotic L21 protein MID00_10985 PF05532 CsbD-like MID00_10995 PF01960 ArgJ family MID00_11005 PF00501 AMP-binding enzyme MID00_11005 PF13193 AMP-binding enzyme C-terminal domain MID00_11010 PF00202 Aminotransferase class-III MID00_11015 PF02581 Thiamine monophosphate synthase MID00_11025 PF00301 Rubredoxin MID00_11030 PF02622 Uncharacterized ACR, COG1678 MID00_11035 PF03652 Holliday junction resolvase MID00_11040 PF01553 Acyltransferase MID00_11045 PF00149 Calcineurin-like phosphoesterase MID00_11055 PF00912 Transglycosylase MID00_11060 PF08501 Shikimate dehydrogenase substrate binding domain MID00_11060 PF01488 Shikimate / quinate 5-dehydrogenase MID00_11060 PF18317 Shikimate 5'-dehydrogenase C-terminal domain MID00_11075 PF05728 Uncharacterised protein family (UPF0227) MID00_11080 PF08245 Mur ligase middle domain MID00_11080 PF01225 Mur ligase family, catalytic domain MID00_11080 PF02875 Mur ligase family, glutamate ligase domain MID00_11085 PF00578 AhpC/TSA family MID00_11090 PF01220 Dehydroquinase class II MID00_11095 PF00364 Biotin-requiring enzyme MID00_11100 PF02785 Biotin carboxylase C-terminal domain MID00_11100 PF00289 Biotin carboxylase, N-terminal domain MID00_11100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MID00_11115 PF00294 pfkB family carbohydrate kinase MID00_11120 PF05433 Glycine zipper 2TM domain MID00_11125 PF02805 Metal binding domain of Ada MID00_11125 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MID00_11125 PF12833 Helix-turn-helix domain MID00_11125 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MID00_11130 PF02325 YGGT family MID00_11145 PF01037 Lrp/AsnC ligand binding domain MID00_11155 PF07152 YaeQ protein MID00_11160 PF00749 tRNA synthetases class I (E and Q), catalytic domain MID00_11165 PF00196 Bacterial regulatory proteins, luxR family MID00_11165 PF00072 Response regulator receiver domain MID00_11170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_11170 PF00512 His Kinase A (phospho-acceptor) domain MID00_11170 PF00072 Response regulator receiver domain MID00_11170 PF13426 PAS domain MID00_11170 PF08448 PAS fold MID00_11175 PF00689 Cation transporting ATPase, C-terminus MID00_11175 PF00690 Cation transporter/ATPase, N-terminus MID00_11200 PF04751 Protein of unknown function (DUF615) MID00_11205 PF01523 Putative modulator of DNA gyrase MID00_11210 PF03480 Bacterial extracellular solute-binding protein, family 7 MID00_11215 PF00572 Ribosomal protein L13 MID00_11220 PF00380 Ribosomal protein S9/S16 MID00_11225 PF02774 Semialdehyde dehydrogenase, dimerisation domain MID00_11225 PF01118 Semialdehyde dehydrogenase, NAD binding domain MID00_11235 PF01521 Iron-sulphur cluster biosynthesis MID00_11240 PF03702 Anhydro-N-acetylmuramic acid kinase MID00_11245 PF04225 Opacity-associated protein A LysM-like domain MID00_11245 PF01551 Peptidase family M23 MID00_11250 PF00579 tRNA synthetases class I (W and Y) MID00_11250 PF01479 S4 domain MID00_11255 PF01161 Phosphatidylethanolamine-binding protein MID00_11260 PF00464 Serine hydroxymethyltransferase MID00_11265 PF03477 ATP cone domain MID00_11270 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MID00_11270 PF01872 RibD C-terminal domain MID00_11280 PF01965 DJ-1/PfpI family MID00_11280 PF12833 Helix-turn-helix domain MID00_11295 PF01053 Cys/Met metabolism PLP-dependent enzyme MID00_11310 PF08521 Two-component sensor kinase N-terminal MID00_11310 PF00512 His Kinase A (phospho-acceptor) domain MID00_11310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_11315 PF00072 Response regulator receiver domain MID00_11315 PF00486 Transcriptional regulatory protein, C terminal MID00_11320 PF03358 NADPH-dependent FMN reductase MID00_11325 PF03960 ArsC family MID00_11330 PF02040 Arsenical pump membrane protein MID00_11340 PF03466 LysR substrate binding domain MID00_11340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_11355 PF00501 AMP-binding enzyme MID00_11355 PF13193 AMP-binding enzyme C-terminal domain MID00_11360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_11360 PF03466 LysR substrate binding domain MID00_11370 PF00005 ABC transporter MID00_11375 PF00528 Binding-protein-dependent transport system inner membrane component MID00_11380 PF00465 Iron-containing alcohol dehydrogenase MID00_11385 PF13419 Haloacid dehalogenase-like hydrolase MID00_11390 PF03466 LysR substrate binding domain MID00_11390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_11395 PF05506 Domain of unknown function (DUF756) MID00_11395 PF04185 Phosphoesterase family MID00_11415 PF00005 ABC transporter MID00_11420 PF00005 ABC transporter MID00_11420 PF12399 Branched-chain amino acid ATP-binding cassette transporter MID00_11430 PF02653 Branched-chain amino acid transport system / permease component MID00_11435 PF13458 Periplasmic binding protein MID00_11450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_11450 PF03466 LysR substrate binding domain MID00_11455 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MID00_11460 PF00107 Zinc-binding dehydrogenase MID00_11460 PF08240 Alcohol dehydrogenase GroES-like domain MID00_11480 PF00378 Enoyl-CoA hydratase/isomerase MID00_11485 PF02515 CoA-transferase family III MID00_11490 PF08240 Alcohol dehydrogenase GroES-like domain MID00_11490 PF00107 Zinc-binding dehydrogenase MID00_11495 PF03401 Tripartite tricarboxylate transporter family receptor MID00_11500 PF13607 Succinyl-CoA ligase like flavodoxin domain MID00_11500 PF13380 CoA binding domain MID00_11505 PF00378 Enoyl-CoA hydratase/isomerase MID00_11510 PF05995 Cysteine dioxygenase type I MID00_11525 PF02358 Trehalose-phosphatase MID00_11545 PF00982 Glycosyltransferase family 20 MID00_11550 PF00309 Sigma-54 factor, Activator interacting domain (AID) MID00_11550 PF04552 Sigma-54, DNA binding domain MID00_11550 PF04963 Sigma-54 factor, core binding domain MID00_11560 PF02954 Bacterial regulatory protein, Fis family MID00_11560 PF01590 GAF domain MID00_11560 PF00158 Sigma-54 interaction domain MID00_11565 PF04073 Aminoacyl-tRNA editing domain MID00_11590 PF00581 Rhodanese-like domain MID00_11590 PF17773 UPF0176 acylphosphatase like domain MID00_11600 PF00375 Sodium:dicarboxylate symporter family MID00_11605 PF00512 His Kinase A (phospho-acceptor) domain MID00_11605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_11605 PF02743 Cache domain MID00_11610 PF00158 Sigma-54 interaction domain MID00_11610 PF00072 Response regulator receiver domain MID00_11610 PF02954 Bacterial regulatory protein, Fis family MID00_11620 PF01464 Transglycosylase SLT domain MID00_11620 PF01476 LysM domain MID00_11625 PF16123 Hydroxyacylglutathione hydrolase C-terminus MID00_11625 PF00753 Metallo-beta-lactamase superfamily MID00_11630 PF08241 Methyltransferase domain MID00_11635 PF00075 RNase H MID00_11640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID00_11645 PF00873 AcrB/AcrD/AcrF family MID00_11650 PF00929 Exonuclease MID00_11660 PF02667 Short chain fatty acid transporter MID00_11665 PF00593 TonB dependent receptor MID00_11665 PF07715 TonB-dependent Receptor Plug Domain MID00_11675 PF01032 FecCD transport family MID00_11680 PF00005 ABC transporter MID00_11685 PF01047 MarR family MID00_11695 PF00561 alpha/beta hydrolase fold MID00_11705 PF00857 Isochorismatase family MID00_11715 PF00355 Rieske [2Fe-2S] domain MID00_11715 PF00848 Ring hydroxylating alpha subunit (catalytic domain) MID00_11720 PF14759 Reductase C-terminal MID00_11720 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID00_11725 PF00355 Rieske [2Fe-2S] domain MID00_11730 PF03480 Bacterial extracellular solute-binding protein, family 7 MID00_11735 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MID00_11735 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MID00_11740 PF03450 CO dehydrogenase flavoprotein C-terminal domain MID00_11740 PF00941 FAD binding domain in molybdopterin dehydrogenase MID00_11745 PF01799 [2Fe-2S] binding domain MID00_11745 PF00111 2Fe-2S iron-sulfur cluster binding domain MID00_11755 PF00005 ABC transporter MID00_11760 PF00528 Binding-protein-dependent transport system inner membrane component MID00_11770 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID00_11775 PF13478 XdhC Rossmann domain MID00_11775 PF02625 XdhC and CoxI family MID00_11780 PF01256 Carbohydrate kinase MID00_11780 PF03853 YjeF-related protein N-terminus MID00_11790 PF13091 PLD-like domain MID00_11800 PF00392 Bacterial regulatory proteins, gntR family MID00_11800 PF07702 UTRA domain MID00_11805 PF00753 Metallo-beta-lactamase superfamily MID00_11805 PF12706 Beta-lactamase superfamily domain MID00_11820 PF03401 Tripartite tricarboxylate transporter family receptor MID00_11825 PF16347 Domain of unknown function (DUF4976) MID00_11825 PF00884 Sulfatase MID00_11830 PF03466 LysR substrate binding domain MID00_11830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_11835 PF17158 Membrane-associated sensor, integral membrane domain MID00_11835 PF00990 Diguanylate cyclase, GGDEF domain MID00_11840 PF01804 Penicillin amidase MID00_11850 PF13458 Periplasmic binding protein MID00_11860 PF00005 ABC transporter MID00_11860 PF12399 Branched-chain amino acid ATP-binding cassette transporter MID00_11865 PF00005 ABC transporter MID00_11875 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID00_11875 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MID00_11875 PF00034 Cytochrome c MID00_11880 PF00111 2Fe-2S iron-sulfur cluster binding domain MID00_11880 PF01799 [2Fe-2S] binding domain MID00_11885 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MID00_11885 PF00034 Cytochrome c MID00_11885 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID00_11890 PF00561 alpha/beta hydrolase fold MID00_11900 PF00857 Isochorismatase family MID00_11920 PF12804 MobA-like NTP transferase domain MID00_11925 PF07238 PilZ domain MID00_11925 PF07317 Flagellar regulator YcgR MID00_11930 PF02423 Ornithine cyclodeaminase/mu-crystallin family MID00_11940 PF01053 Cys/Met metabolism PLP-dependent enzyme MID00_11955 PF00037 4Fe-4S binding domain MID00_11960 PF01467 Cytidylyltransferase-like MID00_11970 PF02881 SRP54-type protein, helical bundle domain MID00_11970 PF00448 SRP54-type protein, GTPase domain MID00_11985 PF00925 GTP cyclohydrolase II MID00_11985 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MID00_11990 PF00885 6,7-dimethyl-8-ribityllumazine synthase MID00_11995 PF01029 NusB family MID00_12000 PF00586 AIR synthase related protein, N-terminal domain MID00_12000 PF02769 AIR synthase related protein, C-terminal domain MID00_12005 PF04608 Phosphatidylglycerophosphatase A MID00_12010 PF02464 Competence-damaged protein MID00_12015 PF01614 Bacterial transcriptional regulator MID00_12015 PF09339 IclR helix-turn-helix domain MID00_12020 PF03401 Tripartite tricarboxylate transporter family receptor MID00_12025 PF02515 CoA-transferase family III MID00_12030 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family MID00_12035 PF01219 Prokaryotic diacylglycerol kinase MID00_12040 PF00118 TCP-1/cpn60 chaperonin family MID00_12045 PF00166 Chaperonin 10 Kd subunit MID00_12060 PF01425 Amidase MID00_12065 PF17158 Membrane-associated sensor, integral membrane domain MID00_12065 PF00990 Diguanylate cyclase, GGDEF domain MID00_12075 PF02678 Pirin MID00_12075 PF17954 Quercetinase C-terminal cupin domain MID00_12080 PF03466 LysR substrate binding domain MID00_12080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_12090 PF01515 Phosphate acetyl/butaryl transferase MID00_12095 PF00871 Acetokinase family MID00_12100 PF03466 LysR substrate binding domain MID00_12100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_12105 PF07063 Domain of unknown function (DUF1338) MID00_12110 PF01266 FAD dependent oxidoreductase MID00_12115 PF00171 Aldehyde dehydrogenase family MID00_12120 PF00324 Amino acid permease MID00_12125 PF00009 Elongation factor Tu GTP binding domain MID00_12130 PF01507 Phosphoadenosine phosphosulfate reductase family MID00_12135 PF01507 Phosphoadenosine phosphosulfate reductase family MID00_12140 PF00892 EamA-like transporter family MID00_12145 PF00155 Aminotransferase class I and II MID00_12150 PF10417 C-terminal domain of 1-Cys peroxiredoxin MID00_12150 PF00578 AhpC/TSA family MID00_12155 PF13192 Thioredoxin domain MID00_12155 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID00_12160 PF03466 LysR substrate binding domain MID00_12160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_12165 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain MID00_12165 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain MID00_12170 PF01810 LysE type translocator MID00_12175 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain MID00_12175 PF01113 Dihydrodipicolinate reductase, N-terminus MID00_12185 PF00005 ABC transporter MID00_12190 PF02653 Branched-chain amino acid transport system / permease component MID00_12195 PF02653 Branched-chain amino acid transport system / permease component MID00_12200 PF02608 ABC transporter substrate-binding protein PnrA-like MID00_12205 PF01554 MatE MID00_12220 PF00561 alpha/beta hydrolase fold MID00_12230 PF00691 OmpA family MID00_12235 PF07676 WD40-like Beta Propeller Repeat MID00_12235 PF04052 TolB amino-terminal domain MID00_12245 PF02472 Biopolymer transport protein ExbD/TolR MID00_12250 PF01618 MotA/TolQ/ExbB proton channel family MID00_12255 PF03061 Thioesterase superfamily MID00_12260 PF04073 Aminoacyl-tRNA editing domain MID00_12260 PF03129 Anticodon binding domain MID00_12260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MID00_12265 PF00293 NUDIX domain MID00_12270 PF00486 Transcriptional regulatory protein, C terminal MID00_12270 PF00072 Response regulator receiver domain MID00_12275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_12275 PF00512 His Kinase A (phospho-acceptor) domain MID00_12280 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MID00_12280 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MID00_12290 PF08402 TOBE domain MID00_12290 PF00005 ABC transporter MID00_12295 PF00528 Binding-protein-dependent transport system inner membrane component MID00_12300 PF01571 Aminomethyltransferase folate-binding domain MID00_12300 PF08669 Glycine cleavage T-protein C-terminal barrel domain MID00_12300 PF01266 FAD dependent oxidoreductase MID00_12300 PF16350 FAD dependent oxidoreductase central domain MID00_12305 PF01970 Tripartite tricarboxylate transporter TctA family MID00_12330 PF01790 Prolipoprotein diacylglyceryl transferase MID00_12335 PF00034 Cytochrome c MID00_12340 PF01625 Peptide methionine sulfoxide reductase MID00_12355 PF04143 Sulphur transport MID00_12360 PF00581 Rhodanese-like domain MID00_12405 PF03441 FAD binding domain of DNA photolyase MID00_12405 PF00875 DNA photolyase MID00_12415 PF01979 Amidohydrolase family MID00_12425 PF05496 Holliday junction DNA helicase RuvB P-loop domain MID00_12425 PF17864 RuvB AAA lid domain MID00_12425 PF05491 RuvB C-terminal winged helix domain MID00_12430 PF00291 Pyridoxal-phosphate dependent enzyme MID00_12435 PF07499 RuvA, C-terminal domain MID00_12435 PF01330 RuvA N terminal domain MID00_12440 PF02075 Crossover junction endodeoxyribonuclease RuvC MID00_12445 PF01808 AICARFT/IMPCHase bienzyme MID00_12445 PF02142 MGS-like domain MID00_12450 PF02954 Bacterial regulatory protein, Fis family MID00_12455 PF01207 Dihydrouridine synthase (Dus) MID00_12460 PF01494 FAD binding domain MID00_12480 PF01435 Peptidase family M48 MID00_12485 PF00561 alpha/beta hydrolase fold MID00_12505 PF00270 DEAD/DEAH box helicase MID00_12505 PF00271 Helicase conserved C-terminal domain MID00_12525 PF09339 IclR helix-turn-helix domain MID00_12525 PF01614 Bacterial transcriptional regulator MID00_12540 PF01180 Dihydroorotate dehydrogenase MID00_12545 PF04377 Arginine-tRNA-protein transferase, C terminus MID00_12545 PF04376 Arginine-tRNA-protein transferase, N terminus MID00_12550 PF03588 Leucyl/phenylalanyl-tRNA protein transferase MID00_12565 PF01047 MarR family MID00_12570 PF00206 Lyase MID00_12570 PF10415 Fumarase C C-terminus MID00_12580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID00_12585 PF00571 CBS domain MID00_12585 PF00478 IMP dehydrogenase / GMP reductase domain MID00_12595 PF07963 Prokaryotic N-terminal methylation motif MID00_12595 PF08334 Type II secretion system (T2SS), protein G MID00_12610 PF07963 Prokaryotic N-terminal methylation motif MID00_12610 PF11612 Type II secretion system (T2SS), protein J MID00_12635 PF00263 Bacterial type II and III secretion system protein MID00_12635 PF03958 Bacterial type II/III secretion system short domain MID00_12640 PF00437 Type II/IV secretion system protein MID00_12645 PF00482 Type II secretion system (T2SS), protein F MID00_12650 PF02796 Helix-turn-helix domain of resolvase MID00_12650 PF00239 Resolvase, N terminal domain MID00_12660 PF05662 Coiled stalk of trimeric autotransporter adhesin MID00_12660 PF03895 YadA-like membrane anchor domain MID00_12660 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin MID00_12660 PF13018 Extended Signal Peptide of Type V secretion system MID00_12665 PF00691 OmpA family MID00_12665 PF01389 OmpA-like transmembrane domain MID00_12680 PF05506 Domain of unknown function (DUF756) MID00_12680 PF04185 Phosphoesterase family MID00_12700 PF01177 Asp/Glu/Hydantoin racemase MID00_12705 PF00202 Aminotransferase class-III MID00_12710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_12710 PF03466 LysR substrate binding domain MID00_12720 PF00392 Bacterial regulatory proteins, gntR family MID00_12720 PF00155 Aminotransferase class I and II MID00_12725 PF00115 Cytochrome C and Quinol oxidase polypeptide I MID00_12745 PF02293 AmiS/UreI family transporter MID00_12770 PF00873 AcrB/AcrD/AcrF family MID00_12780 PF09278 MerR, DNA binding MID00_12780 PF00376 MerR family regulatory protein MID00_12785 PF02028 BCCT, betaine/carnitine/choline family transporter MID00_12790 PF08543 Phosphomethylpyrimidine kinase MID00_12795 PF00117 Glutamine amidotransferase class-I MID00_12795 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain MID00_12810 PF00464 Serine hydroxymethyltransferase MID00_12815 PF00155 Aminotransferase class I and II MID00_12815 PF00392 Bacterial regulatory proteins, gntR family MID00_12820 PF00266 Aminotransferase class-V MID00_12825 PF00464 Serine hydroxymethyltransferase MID00_12840 PF06508 Queuosine biosynthesis protein QueC MID00_12845 PF02592 Putative vitamin uptake transporter MID00_12855 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus MID00_12855 PF00561 alpha/beta hydrolase fold MID00_12860 PF02321 Outer membrane efflux protein MID00_12865 PF13533 Biotin-lipoyl like MID00_12870 PF00005 ABC transporter MID00_12885 PF00106 short chain dehydrogenase MID00_12890 PF00108 Thiolase, N-terminal domain MID00_12890 PF02803 Thiolase, C-terminal domain MID00_12895 PF11339 Protein of unknown function (DUF3141) MID00_12920 PF07690 Major Facilitator Superfamily MID00_12925 PF00155 Aminotransferase class I and II MID00_12925 PF00392 Bacterial regulatory proteins, gntR family MID00_12930 PF01425 Amidase MID00_12950 PF00072 Response regulator receiver domain MID00_12950 PF00196 Bacterial regulatory proteins, luxR family MID00_12955 PF09456 RcsC Alpha-Beta-Loop (ABL) MID00_12955 PF00072 Response regulator receiver domain MID00_12955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_12955 PF00512 His Kinase A (phospho-acceptor) domain MID00_12960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_12960 PF00512 His Kinase A (phospho-acceptor) domain MID00_12960 PF09456 RcsC Alpha-Beta-Loop (ABL) MID00_12960 PF00072 Response regulator receiver domain MID00_12965 PF00577 Outer membrane usher protein MID00_12965 PF13954 PapC N-terminal domain MID00_12965 PF13953 PapC C-terminal domain MID00_12970 PF02753 Pili assembly chaperone PapD, C-terminal domain MID00_12970 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain MID00_12990 PF07690 Major Facilitator Superfamily MID00_12995 PF07836 DmpG-like communication domain MID00_12995 PF00682 HMGL-like MID00_13000 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation MID00_13000 PF01118 Semialdehyde dehydrogenase, NAD binding domain MID00_13005 PF01557 Fumarylacetoacetate (FAA) hydrolase family MID00_13010 PF12697 Alpha/beta hydrolase family MID00_13015 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase MID00_13020 PF14759 Reductase C-terminal MID00_13020 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID00_13025 PF00106 short chain dehydrogenase MID00_13030 PF00355 Rieske [2Fe-2S] domain MID00_13035 PF00866 Ring hydroxylating beta subunit MID00_13040 PF00355 Rieske [2Fe-2S] domain MID00_13040 PF00848 Ring hydroxylating alpha subunit (catalytic domain) MID00_13045 PF03466 LysR substrate binding domain MID00_13045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_13055 PF03880 DbpA RNA binding domain MID00_13055 PF00270 DEAD/DEAH box helicase MID00_13055 PF00271 Helicase conserved C-terminal domain MID00_13060 PF01614 Bacterial transcriptional regulator MID00_13060 PF09339 IclR helix-turn-helix domain MID00_13065 PF00171 Aldehyde dehydrogenase family MID00_13075 PF02653 Branched-chain amino acid transport system / permease component MID00_13085 PF00005 ABC transporter MID00_13090 PF00005 ABC transporter MID00_13095 PF00465 Iron-containing alcohol dehydrogenase MID00_13110 PF13687 Domain of unknown function (DUF4153) MID00_13115 PF00756 Putative esterase MID00_13125 PF07690 Major Facilitator Superfamily MID00_13130 PF00593 TonB dependent receptor MID00_13130 PF07660 Secretin and TonB N terminus short domain MID00_13130 PF07715 TonB-dependent Receptor Plug Domain MID00_13180 PF13533 Biotin-lipoyl like MID00_13185 PF02321 Outer membrane efflux protein MID00_13210 PF13614 AAA domain MID00_13245 PF00436 Single-strand binding protein family MID00_13250 PF01751 Toprim domain MID00_13250 PF01131 DNA topoisomerase MID00_13255 PF00145 C-5 cytosine-specific DNA methylase MID00_13285 PF01699 Sodium/calcium exchanger protein MID00_13290 PF01098 Cell cycle protein MID00_13460 PF04002 RadC-like JAB domain MID00_13510 PF00361 Proton-conducting membrane transporter MID00_13510 PF13244 Domain of unknown function (DUF4040) MID00_13510 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MID00_13515 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter MID00_13520 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MID00_13525 PF00361 Proton-conducting membrane transporter MID00_13530 PF01899 Na+/H+ ion antiporter subunit MID00_13540 PF03334 Na+/H+ antiporter subunit MID00_13545 PF00989 PAS fold MID00_13545 PF00512 His Kinase A (phospho-acceptor) domain MID00_13545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_13550 PF02954 Bacterial regulatory protein, Fis family MID00_13550 PF00072 Response regulator receiver domain MID00_13550 PF00158 Sigma-54 interaction domain MID00_13555 PF01252 Signal peptidase (SPase) II MID00_13560 PF03466 LysR substrate binding domain MID00_13560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_13575 PF00589 Phage integrase family MID00_13575 PF14659 Phage integrase, N-terminal SAM-like domain MID00_13575 PF13356 Arm DNA-binding domain MID00_13595 PF01565 FAD binding domain MID00_13595 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain MID00_13605 PF07690 Major Facilitator Superfamily MID00_13610 PF00465 Iron-containing alcohol dehydrogenase MID00_13615 PF00561 alpha/beta hydrolase fold MID00_13630 PF01113 Dihydrodipicolinate reductase, N-terminus MID00_13630 PF05173 Dihydrodipicolinate reductase, C-terminus MID00_13635 PF04355 SmpA / OmlA family MID00_13640 PF01475 Ferric uptake regulator family MID00_13645 PF02463 RecF/RecN/SMC N terminal domain MID00_13650 PF01513 ATP-NAD kinase MID00_13655 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MID00_13655 PF01628 HrcA protein C terminal domain MID00_13660 PF00762 Ferrochelatase MID00_13665 PF01025 GrpE MID00_13670 PF00012 Hsp70 protein MID00_13675 PF00684 DnaJ central domain MID00_13675 PF01556 DnaJ C terminal domain MID00_13675 PF00226 DnaJ domain MID00_13680 PF00675 Insulinase (Peptidase family M16) MID00_13680 PF05193 Peptidase M16 inactive domain MID00_13710 PF08479 POTRA domain, ShlB-type MID00_13710 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB MID00_13740 PF04972 BON domain MID00_13740 PF00263 Bacterial type II and III secretion system protein MID00_13740 PF13629 Pilus formation protein N terminal region MID00_13750 PF00437 Type II/IV secretion system protein MID00_13780 PF00158 Sigma-54 interaction domain MID00_13780 PF02954 Bacterial regulatory protein, Fis family MID00_13780 PF00072 Response regulator receiver domain MID00_13800 PF01434 Peptidase family M41 MID00_13800 PF00004 ATPase family associated with various cellular activities (AAA) MID00_13800 PF17862 AAA+ lid domain MID00_13805 PF00034 Cytochrome c MID00_13820 PF00180 Isocitrate/isopropylmalate dehydrogenase MID00_13825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID00_13825 PF08028 Acyl-CoA dehydrogenase, C-terminal domain MID00_13830 PF00135 Carboxylesterase family MID00_13850 PF07690 Major Facilitator Superfamily MID00_13870 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID00_13875 PF01580 FtsK/SpoIIIE family MID00_13875 PF09397 Ftsk gamma domain MID00_13875 PF17854 FtsK alpha domain MID00_13875 PF13491 4TM region of DNA translocase FtsK/SpoIIIE MID00_13880 PF03548 Outer membrane lipoprotein carrier protein LolA MID00_13885 PF16193 AAA C-terminal domain MID00_13885 PF12002 MgsA AAA+ ATPase C terminal MID00_13885 PF00004 ATPase family associated with various cellular activities (AAA) MID00_13890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MID00_13890 PF02403 Seryl-tRNA synthetase N-terminal domain MID00_13915 PF03883 Peroxide stress protein YaaA MID00_13920 PF12805 FUSC-like inner membrane protein yccS MID00_13925 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MID00_13925 PF00205 Thiamine pyrophosphate enzyme, central domain MID00_13925 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MID00_13930 PF10369 Small subunit of acetolactate synthase MID00_13935 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain MID00_13935 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain MID00_13940 PF01066 CDP-alcohol phosphatidyltransferase MID00_13945 PF00312 Ribosomal protein S15 MID00_13950 PF00013 KH domain MID00_13950 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MID00_13950 PF01138 3' exoribonuclease family, domain 1 MID00_13950 PF03725 3' exoribonuclease family, domain 2 MID00_13950 PF00575 S1 RNA binding domain MID00_13965 PF08240 Alcohol dehydrogenase GroES-like domain MID00_13965 PF00107 Zinc-binding dehydrogenase MID00_13970 PF00121 Triosephosphate isomerase MID00_13975 PF03840 Preprotein translocase SecG subunit MID00_13985 PF13609 Gram-negative porin MID00_13990 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 MID00_13995 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit MID00_14000 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit MID00_14005 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit MID00_14015 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MID00_14015 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region MID00_14015 PF10531 SLBB domain MID00_14020 PF00384 Molybdopterin oxidoreductase MID00_14020 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MID00_14020 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal MID00_14025 PF00146 NADH dehydrogenase MID00_14030 PF12838 4Fe-4S dicluster domain MID00_14035 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 MID00_14040 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MID00_14045 PF00361 Proton-conducting membrane transporter MID00_14045 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MID00_14050 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus MID00_14050 PF00361 Proton-conducting membrane transporter MID00_14055 PF00361 Proton-conducting membrane transporter MID00_14065 PF03060 Nitronate monooxygenase MID00_14075 PF03461 TRCF domain MID00_14075 PF00271 Helicase conserved C-terminal domain MID00_14075 PF17757 UvrB interaction domain MID00_14075 PF02559 CarD-like/TRCF domain MID00_14075 PF00270 DEAD/DEAH box helicase MID00_14080 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MID00_14085 PF02542 YgbB family MID00_14090 PF00672 HAMP domain MID00_14090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_14090 PF00512 His Kinase A (phospho-acceptor) domain MID00_14095 PF00072 Response regulator receiver domain MID00_14095 PF00486 Transcriptional regulatory protein, C terminal MID00_14100 PF00814 Glycoprotease family MID00_14105 PF03167 Uracil DNA glycosylase superfamily MID00_14110 PF07690 Major Facilitator Superfamily MID00_14115 PF06470 SMC proteins Flexible Hinge Domain MID00_14115 PF02463 RecF/RecN/SMC N terminal domain MID00_14125 PF12826 Helix-hairpin-helix motif MID00_14125 PF03120 NAD-dependent DNA ligase OB-fold domain MID00_14125 PF03119 NAD-dependent DNA ligase C4 zinc finger domain MID00_14125 PF00533 BRCA1 C Terminus (BRCT) domain MID00_14125 PF01653 NAD-dependent DNA ligase adenylation domain MID00_14140 PF04279 Intracellular septation protein A MID00_14145 PF01641 SelR domain MID00_14160 PF12399 Branched-chain amino acid ATP-binding cassette transporter MID00_14160 PF00005 ABC transporter MID00_14165 PF00005 ABC transporter MID00_14170 PF03922 OmpW family MID00_14175 PF00005 ABC transporter MID00_14180 PF00730 HhH-GPD superfamily base excision DNA repair protein MID00_14180 PF10576 Iron-sulfur binding domain of endonuclease III MID00_14180 PF00633 Helix-hairpin-helix motif MID00_14185 PF04060 Putative Fe-S cluster MID00_14195 PF11953 Domain of unknown function (DUF3470) MID00_14195 PF00037 4Fe-4S binding domain MID00_14200 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family MID00_14200 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain MID00_14210 PF04607 Region found in RelA / SpoT proteins MID00_14210 PF02824 TGS domain MID00_14210 PF13291 ACT domain MID00_14215 PF00291 Pyridoxal-phosphate dependent enzyme MID00_14220 PF00290 Tryptophan synthase alpha chain MID00_14225 PF01039 Carboxyl transferase domain MID00_14225 PF17848 Acetyl-coA carboxylase zinc finger domain MID00_14230 PF12111 Polyribonucleotide phosphorylase C terminal MID00_14230 PF10150 Ribonuclease E/G family MID00_14230 PF00575 S1 RNA binding domain MID00_14235 PF00849 RNA pseudouridylate synthase MID00_14235 PF01479 S4 domain MID00_14240 PF13419 Haloacid dehalogenase-like hydrolase MID00_14245 PF00174 Oxidoreductase molybdopterin binding domain MID00_14250 PF01794 Ferric reductase like transmembrane component MID00_14255 PF01510 N-acetylmuramoyl-L-alanine amidase MID00_14260 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MID00_14265 PF02545 Maf-like protein MID00_14270 PF02620 Large ribosomal RNA subunit accumulation protein YceD MID00_14275 PF01783 Ribosomal L32p protein family MID00_14280 PF02504 Fatty acid synthesis protein MID00_14285 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MID00_14285 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MID00_14290 PF00698 Acyl transferase domain MID00_14300 PF00550 Phosphopantetheine attachment site MID00_14305 PF00109 Beta-ketoacyl synthase, N-terminal domain MID00_14305 PF02801 Beta-ketoacyl synthase, C-terminal domain MID00_14315 PF08281 Sigma-70, region 4 MID00_14315 PF04542 Sigma-70 region 2 MID00_14330 PF13180 PDZ domain MID00_14335 PF06421 GTP-binding protein LepA C-terminus MID00_14335 PF03144 Elongation factor Tu domain 2 MID00_14335 PF00679 Elongation factor G C-terminus MID00_14335 PF00009 Elongation factor Tu GTP binding domain MID00_14340 PF10502 Signal peptidase, peptidase S26 MID00_14345 PF00035 Double-stranded RNA binding motif MID00_14345 PF14622 Ribonuclease-III-like MID00_14350 PF01926 50S ribosome-binding GTPase MID00_14350 PF07650 KH domain MID00_14355 PF02565 Recombination protein O C terminal MID00_14355 PF11967 Recombination protein O N terminal MID00_14370 PF00132 Bacterial transferase hexapeptide (six repeats) MID00_14375 PF01027 Inhibitor of apoptosis-promoting Bax1 MID00_14385 PF00883 Cytosol aminopeptidase family, catalytic domain MID00_14385 PF02789 Cytosol aminopeptidase family, N-terminal domain MID00_14395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_14395 PF03466 LysR substrate binding domain MID00_14400 PF00171 Aldehyde dehydrogenase family MID00_14405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_14405 PF03466 LysR substrate binding domain MID00_14415 PF00877 NlpC/P60 family MID00_14425 PF13193 AMP-binding enzyme C-terminal domain MID00_14425 PF16177 Acetyl-coenzyme A synthetase N-terminus MID00_14425 PF00501 AMP-binding enzyme MID00_14430 PF00892 EamA-like transporter family MID00_14445 PF01144 Coenzyme A transferase MID00_14450 PF01144 Coenzyme A transferase MID00_14455 PF00557 Metallopeptidase family M24 MID00_14455 PF01321 Creatinase/Prolidase N-terminal domain MID00_14460 PF06418 CTP synthase N-terminus MID00_14460 PF00117 Glutamine amidotransferase class-I MID00_14465 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID00_14470 PF00793 DAHP synthetase I family MID00_14485 PF07690 Major Facilitator Superfamily MID00_14495 PF00113 Enolase, C-terminal TIM barrel domain MID00_14495 PF03952 Enolase, N-terminal domain MID00_14500 PF04977 Septum formation initiator MID00_14510 PF01430 Hsp33 protein MID00_14520 PF02926 THUMP domain MID00_14520 PF01170 Putative RNA methylase family UPF0020 MID00_14525 PF03653 Uncharacterised protein family (UPF0093) MID00_14530 PF00171 Aldehyde dehydrogenase family MID00_14535 PF14840 Processivity clamp loader gamma complex DNA pol III C-term MID00_14535 PF06144 DNA polymerase III, delta subunit MID00_14545 PF13603 Leucyl-tRNA synthetase, Domain 2 MID00_14545 PF09334 tRNA synthetases class I (M) MID00_14545 PF08264 Anticodon-binding domain of tRNA MID00_14545 PF00133 tRNA synthetases class I (I, L, M and V) MID00_14550 PF00471 Ribosomal protein L33 MID00_14555 PF00830 Ribosomal L28 family MID00_14560 PF07690 Major Facilitator Superfamily MID00_14575 PF00528 Binding-protein-dependent transport system inner membrane component MID00_14580 PF00005 ABC transporter MID00_14580 PF00571 CBS domain MID00_14585 PF01554 MatE MID00_14595 PF01197 Ribosomal protein L31 MID00_14615 PF00083 Sugar (and other) transporter MID00_14620 PF01380 SIS domain MID00_14620 PF01418 Helix-turn-helix domain, rpiR family MID00_14625 PF04002 RadC-like JAB domain MID00_14630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MID00_14635 PF02401 LytB protein MID00_14640 PF02798 Glutathione S-transferase, N-terminal domain MID00_14640 PF14497 Glutathione S-transferase, C-terminal domain MID00_14645 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MID00_14645 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MID00_14655 PF01253 Translation initiation factor SUI1 MID00_14670 PF13098 Thioredoxin-like domain MID00_14675 PF02545 Maf-like protein MID00_14680 PF02590 Predicted SPOUT methyltransferase MID00_14690 PF01467 Cytidylyltransferase-like MID00_14695 PF01218 Coproporphyrinogen III oxidase MID00_14700 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain MID00_14700 PF02843 Phosphoribosylglycinamide synthetase, C domain MID00_14700 PF02844 Phosphoribosylglycinamide synthetase, N domain MID00_14705 PF01709 Transcriptional regulator MID00_14710 PF05872 Bacterial protein of unknown function (DUF853) MID00_14715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MID00_14720 PF00180 Isocitrate/isopropylmalate dehydrogenase MID00_14730 PF00107 Zinc-binding dehydrogenase MID00_14730 PF08240 Alcohol dehydrogenase GroES-like domain MID00_14735 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain MID00_14740 PF11940 Domain of unknown function (DUF3458) Ig-like fold MID00_14740 PF17432 Domain of unknown function (DUF3458_C) ARM repeats MID00_14740 PF01433 Peptidase family M1 domain MID00_14750 PF00816 H-NS histone family MID00_14755 PF01523 Putative modulator of DNA gyrase MID00_14760 PF00892 EamA-like transporter family MID00_14765 PF01047 MarR family MID00_14770 PF00583 Acetyltransferase (GNAT) family MID00_14775 PF00202 Aminotransferase class-III MID00_14780 PF06339 Ectoine synthase MID00_14785 PF05721 Phytanoyl-CoA dioxygenase (PhyH) MID00_14795 PF00005 ABC transporter MID00_14800 PF00528 Binding-protein-dependent transport system inner membrane component MID00_14805 PF00528 Binding-protein-dependent transport system inner membrane component MID00_14810 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID00_14815 PF13722 5TM C-terminal transporter carbon starvation CstA MID00_14815 PF02554 Carbon starvation protein CstA MID00_14820 PF04328 Selenoprotein, putative MID00_14825 PF00793 DAHP synthetase I family MID00_14830 PF01565 FAD binding domain MID00_14830 PF02913 FAD linked oxidases, C-terminal domain MID00_14840 PF01925 Sulfite exporter TauE/SafE MID00_14845 PF07859 alpha/beta hydrolase fold MID00_14855 PF00043 Glutathione S-transferase, C-terminal domain MID00_14855 PF13417 Glutathione S-transferase, N-terminal domain MID00_14860 PF08328 Adenylosuccinate lyase C-terminal MID00_14860 PF00206 Lyase MID00_14865 PF01322 Cytochrome C' MID00_14870 PF00909 Ammonium Transporter Family MID00_14875 PF00543 Nitrogen regulatory protein P-II MID00_14880 PF01047 MarR family MID00_14885 PF02668 Taurine catabolism dioxygenase TauD, TfdA family MID00_14890 PF07690 Major Facilitator Superfamily MID00_14900 PF04228 Putative neutral zinc metallopeptidase MID00_14905 PF03109 ABC1 family MID00_14920 PF00925 GTP cyclohydrolase II MID00_14925 PF02525 Flavodoxin-like fold MID00_14930 PF03466 LysR substrate binding domain MID00_14930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_14940 PF01169 Uncharacterized protein family UPF0016 MID00_14945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID00_14945 PF08447 PAS fold MID00_14950 PF00990 Diguanylate cyclase, GGDEF domain MID00_14950 PF00072 Response regulator receiver domain MID00_14955 PF00512 His Kinase A (phospho-acceptor) domain MID00_14955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_14960 PF17284 Spermidine synthase tetramerisation domain MID00_14965 PF01747 ATP-sulfurylase MID00_14965 PF14306 PUA-like domain MID00_14970 PF00072 Response regulator receiver domain MID00_14970 PF01627 Hpt domain MID00_14970 PF00512 His Kinase A (phospho-acceptor) domain MID00_14970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_14970 PF00672 HAMP domain MID00_14975 PF00196 Bacterial regulatory proteins, luxR family MID00_14975 PF00072 Response regulator receiver domain MID00_14980 PF00474 Sodium:solute symporter family MID00_15000 PF01810 LysE type translocator MID00_15005 PF00375 Sodium:dicarboxylate symporter family MID00_15015 PF00043 Glutathione S-transferase, C-terminal domain MID00_15015 PF02798 Glutathione S-transferase, N-terminal domain MID00_15025 PF00392 Bacterial regulatory proteins, gntR family MID00_15025 PF00155 Aminotransferase class I and II MID00_15030 PF03466 LysR substrate binding domain MID00_15030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_15035 PF01810 LysE type translocator MID00_15050 PF00005 ABC transporter MID00_15050 PF16326 ABC transporter C-terminal domain MID00_15050 PF12848 ABC transporter MID00_15060 PF00440 Bacterial regulatory proteins, tetR family MID00_15065 PF01042 Endoribonuclease L-PSP MID00_15070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_15070 PF03466 LysR substrate binding domain MID00_15075 PF00155 Aminotransferase class I and II MID00_15085 PF08713 DNA alkylation repair enzyme MID00_15090 PF00149 Calcineurin-like phosphoesterase MID00_15095 PF00199 Catalase MID00_15095 PF06628 Catalase-related immune-responsive MID00_15095 PF18011 C-terminal domain found in long catalases MID00_15115 PF11953 Domain of unknown function (DUF3470) MID00_15115 PF00037 4Fe-4S binding domain MID00_15120 PF07690 Major Facilitator Superfamily MID00_15125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_15125 PF03466 LysR substrate binding domain MID00_15130 PF13419 Haloacid dehalogenase-like hydrolase MID00_15140 PF00691 OmpA family MID00_15145 PF03989 DNA gyrase C-terminal domain, beta-propeller MID00_15145 PF00521 DNA gyrase/topoisomerase IV, subunit A MID00_15150 PF00266 Aminotransferase class-V MID00_15155 PF01842 ACT domain MID00_15155 PF01817 Chorismate mutase type II MID00_15155 PF00800 Prephenate dehydratase MID00_15160 PF02153 Prephenate dehydrogenase MID00_15165 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MID00_15170 PF02224 Cytidylate kinase MID00_15175 PF00575 S1 RNA binding domain MID00_15180 PF00216 Bacterial DNA-binding protein MID00_15190 PF18073 Rubredoxin metal binding domain MID00_15195 PF00294 pfkB family carbohydrate kinase MID00_15200 PF01370 NAD dependent epimerase/dehydratase family MID00_15205 PF07733 Bacterial DNA polymerase III alpha NTPase domain MID00_15205 PF02811 PHP domain MID00_15205 PF14579 Helix-hairpin-helix motif MID00_15205 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MID00_15210 PF00291 Pyridoxal-phosphate dependent enzyme MID00_15215 PF13406 Transglycosylase SLT domain MID00_15220 PF00850 Histone deacetylase domain MID00_15225 PF01012 Electron transfer flavoprotein domain MID00_15230 PF01012 Electron transfer flavoprotein domain MID00_15230 PF00766 Electron transfer flavoprotein FAD-binding domain MID00_15235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID00_15235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MID00_15235 PF12806 Acetyl-CoA dehydrogenase C-terminal like MID00_15235 PF02770 Acyl-CoA dehydrogenase, middle domain MID00_15240 PF10417 C-terminal domain of 1-Cys peroxiredoxin MID00_15240 PF00578 AhpC/TSA family MID00_15250 PF03099 Biotin/lipoate A/B protein ligase family MID00_15250 PF10437 Bacterial lipoate protein ligase C-terminus MID00_15260 PF01245 Ribosomal protein L19 MID00_15270 PF03193 RsgA GTPase MID00_15275 PF16491 CAAX prenyl protease N-terminal, five membrane helices MID00_15275 PF01435 Peptidase family M48 MID00_15280 PF00929 Exonuclease MID00_15285 PF05138 Phenylacetic acid catabolic protein MID00_15290 PF06243 Phenylacetic acid degradation B MID00_15295 PF05138 Phenylacetic acid catabolic protein MID00_15300 PF01883 Iron-sulfur cluster assembly protein MID00_15305 PF00970 Oxidoreductase FAD-binding domain MID00_15305 PF00111 2Fe-2S iron-sulfur cluster binding domain MID00_15305 PF00175 Oxidoreductase NAD-binding domain MID00_15310 PF00171 Aldehyde dehydrogenase family MID00_15315 PF00378 Enoyl-CoA hydratase/isomerase MID00_15320 PF03061 Thioesterase superfamily MID00_15325 PF00501 AMP-binding enzyme MID00_15325 PF14535 AMP-binding enzyme C-terminal domain MID00_15330 PF01648 4'-phosphopantetheinyl transferase superfamily MID00_15335 PF00933 Glycosyl hydrolase family 3 N terminal domain MID00_15340 PF08459 UvrC Helix-hairpin-helix N-terminal MID00_15340 PF02151 UvrB/uvrC motif MID00_15340 PF01541 GIY-YIG catalytic domain MID00_15345 PF01066 CDP-alcohol phosphatidyltransferase MID00_15355 PF14489 QueF-like protein MID00_15355 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term MID00_15360 PF00463 Isocitrate lyase family MID00_15365 PF00403 Heavy-metal-associated domain MID00_15375 PF00115 Cytochrome C and Quinol oxidase polypeptide I MID00_15390 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID00_15390 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP MID00_15395 PF13746 4Fe-4S dicluster domain MID00_15395 PF12801 4Fe-4S binding domain MID00_15395 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase MID00_15410 PF13545 Crp-like helix-turn-helix domain MID00_15410 PF00027 Cyclic nucleotide-binding domain MID00_15415 PF00004 ATPase family associated with various cellular activities (AAA) MID00_15415 PF07724 AAA domain (Cdc48 subfamily) MID00_15415 PF17871 AAA lid domain MID00_15415 PF02861 Clp amino terminal domain, pathogenicity island component MID00_15415 PF10431 C-terminal, D2-small domain, of ClpB protein MID00_15420 PF02677 Epoxyqueuosine reductase QueH MID00_15425 PF03710 Glutamate-ammonia ligase adenylyltransferase MID00_15425 PF08335 GlnD PII-uridylyltransferase MID00_15440 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MID00_15440 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MID00_15445 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MID00_15445 PF07498 Rho termination factor, N-terminal domain MID00_15445 PF07497 Rho termination factor, RNA-binding domain MID00_15450 PF00085 Thioredoxin MID00_15455 PF00204 DNA gyrase B MID00_15455 PF00986 DNA gyrase B subunit, carboxyl terminus MID00_15455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_15455 PF01751 Toprim domain MID00_15460 PF00521 DNA gyrase/topoisomerase IV, subunit A MID00_15465 PF00970 Oxidoreductase FAD-binding domain MID00_15465 PF00175 Oxidoreductase NAD-binding domain MID00_15465 PF00111 2Fe-2S iron-sulfur cluster binding domain MID00_15470 PF01266 FAD dependent oxidoreductase MID00_15475 PF13416 Bacterial extracellular solute-binding protein MID00_15510 PF00576 HIUase/Transthyretin family MID00_15525 PF02272 DHHA1 domain MID00_15525 PF01411 tRNA synthetases class II (A) MID00_15525 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MID00_15530 PF01206 Sulfurtransferase TusA MID00_15535 PF00886 Ribosomal protein S16 MID00_15540 PF01782 RimM N-terminal domain MID00_15545 PF01746 tRNA (Guanine-1)-methyltransferase MID00_15555 PF03466 LysR substrate binding domain MID00_15555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_15560 PF00133 tRNA synthetases class I (I, L, M and V) MID00_15560 PF08264 Anticodon-binding domain of tRNA MID00_15560 PF10458 Valyl tRNA synthetase tRNA binding arm MID00_15565 PF00334 Nucleoside diphosphate kinase MID00_15570 PF04055 Radical SAM superfamily MID00_15580 PF04551 GcpE protein MID00_15585 PF03129 Anticodon binding domain MID00_15585 PF13393 Histidyl-tRNA synthetase MID00_15590 PF09976 Tetratricopeptide repeat-like domain MID00_15595 PF13360 PQQ-like domain MID00_15600 PF01926 50S ribosome-binding GTPase MID00_15600 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal MID00_15605 PF00155 Aminotransferase class I and II MID00_15610 PF17209 Hfq protein MID00_15615 PF16360 GTP-binding GTPase Middle Region MID00_15615 PF13167 GTP-binding GTPase N-terminal MID00_15615 PF01926 50S ribosome-binding GTPase MID00_15620 PF01145 SPFH domain / Band 7 family MID00_15620 PF12221 Bacterial membrane protein N terminal MID00_15625 PF01145 SPFH domain / Band 7 family MID00_15630 PF13393 Histidyl-tRNA synthetase MID00_15635 PF00709 Adenylosuccinate synthetase MID00_15640 PF00156 Phosphoribosyl transferase domain MID00_15645 PF01165 Ribosomal protein S21 MID00_15650 PF10410 DnaB-helicase binding domain of primase MID00_15650 PF08278 DNA primase DnaG DnaB-binding MID00_15650 PF08275 DNA primase catalytic core, N-terminal domain MID00_15650 PF01807 CHC2 zinc finger MID00_15655 PF04542 Sigma-70 region 2 MID00_15655 PF04545 Sigma-70, region 4 MID00_15655 PF04539 Sigma-70 region 3 MID00_15655 PF00140 Sigma-70 factor, region 1.2 MID00_15655 PF03979 Sigma-70 factor, region 1.1 MID00_15655 PF04546 Sigma-70, non-essential region MID00_15660 PF00512 His Kinase A (phospho-acceptor) domain MID00_15660 PF00672 HAMP domain MID00_15660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_15665 PF00486 Transcriptional regulatory protein, C terminal MID00_15665 PF00072 Response regulator receiver domain MID00_15670 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family MID00_15675 PF01979 Amidohydrolase family MID00_15685 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MID00_15685 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MID00_15690 PF01799 [2Fe-2S] binding domain MID00_15690 PF00111 2Fe-2S iron-sulfur cluster binding domain MID00_15695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_15695 PF03466 LysR substrate binding domain MID00_15700 PF03746 LamB/YcsF family MID00_15710 PF03594 Benzoate membrane transport protein MID00_15715 PF02311 AraC-like ligand binding domain MID00_15715 PF12833 Helix-turn-helix domain MID00_15720 PF07690 Major Facilitator Superfamily MID00_15725 PF07690 Major Facilitator Superfamily MID00_15730 PF00795 Carbon-nitrogen hydrolase MID00_15740 PF02678 Pirin MID00_15740 PF05726 Pirin C-terminal cupin domain MID00_15750 PF02798 Glutathione S-transferase, N-terminal domain MID00_15755 PF12843 Putative quorum-sensing-regulated virulence factor MID00_15760 PF01738 Dienelactone hydrolase family MID00_15775 PF01266 FAD dependent oxidoreductase MID00_15785 PF13419 Haloacid dehalogenase-like hydrolase MID00_15790 PF00528 Binding-protein-dependent transport system inner membrane component MID00_15795 PF08402 TOBE domain MID00_15795 PF00005 ABC transporter MID00_15800 PF03466 LysR substrate binding domain MID00_15800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_15810 PF06750 Bacterial Peptidase A24 N-terminal domain MID00_15810 PF01478 Type IV leader peptidase family MID00_15830 PF04954 Siderophore-interacting protein MID00_15830 PF08021 Siderophore-interacting FAD-binding domain MID00_15845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_15845 PF03466 LysR substrate binding domain MID00_15850 PF07687 Peptidase dimerisation domain MID00_15850 PF01546 Peptidase family M20/M25/M40 MID00_15870 PF00773 RNB domain MID00_15870 PF08206 Ribonuclease B OB domain MID00_15870 PF08461 Ribonuclease R winged-helix domain MID00_15870 PF00575 S1 RNA binding domain MID00_15870 PF17876 Cold shock domain MID00_15875 PF00588 SpoU rRNA Methylase family MID00_15875 PF08032 RNA 2'-O ribose methyltransferase substrate binding MID00_15880 PF01053 Cys/Met metabolism PLP-dependent enzyme MID00_15885 PF00392 Bacterial regulatory proteins, gntR family MID00_15885 PF00155 Aminotransferase class I and II MID00_15890 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID00_15895 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID00_15900 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MID00_15900 PF10414 Sirohaem synthase dimerisation region MID00_15900 PF14824 Sirohaem biosynthesis protein central MID00_15905 PF04055 Radical SAM superfamily MID00_15905 PF13186 Iron-sulfur cluster-binding domain MID00_15910 PF17805 AsnC-like ligand binding domain MID00_15915 PF17805 AsnC-like ligand binding domain MID00_15915 PF13404 AsnC-type helix-turn-helix domain MID00_15920 PF17805 AsnC-like ligand binding domain MID00_15920 PF13404 AsnC-type helix-turn-helix domain MID00_15930 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID00_15935 PF10414 Sirohaem synthase dimerisation region MID00_15935 PF14824 Sirohaem biosynthesis protein central MID00_15935 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MID00_15940 PF00216 Bacterial DNA-binding protein MID00_15950 PF00313 'Cold-shock' DNA-binding domain MID00_15975 PF00528 Binding-protein-dependent transport system inner membrane component MID00_15980 PF00528 Binding-protein-dependent transport system inner membrane component MID00_15985 PF12857 TOBE-like domain MID00_15985 PF00005 ABC transporter MID00_15995 PF01618 MotA/TolQ/ExbB proton channel family MID00_16000 PF02472 Biopolymer transport protein ExbD/TolR MID00_16005 PF00072 Response regulator receiver domain MID00_16005 PF00486 Transcriptional regulatory protein, C terminal MID00_16010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_16010 PF00512 His Kinase A (phospho-acceptor) domain MID00_16010 PF08521 Two-component sensor kinase N-terminal MID00_16015 PF02705 K+ potassium transporter MID00_16030 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) MID00_16040 PF00361 Proton-conducting membrane transporter MID00_16045 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MID00_16050 PF13244 Domain of unknown function (DUF4040) MID00_16050 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter MID00_16050 PF00361 Proton-conducting membrane transporter MID00_16050 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MID00_16055 PF06969 HemN C-terminal domain MID00_16055 PF04055 Radical SAM superfamily MID00_16060 PF03060 Nitronate monooxygenase MID00_16070 PF07703 Alpha-2-macroglobulin bait region domain MID00_16070 PF00207 Alpha-2-macroglobulin family MID00_16070 PF01835 MG2 domain MID00_16075 PF00912 Transglycosylase MID00_16075 PF00905 Penicillin binding protein transpeptidase domain MID00_16090 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MID00_16090 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MID00_16095 PF00171 Aldehyde dehydrogenase family MID00_16100 PF00474 Sodium:solute symporter family MID00_16105 PF04341 Protein of unknown function, DUF485 MID00_16110 PF00378 Enoyl-CoA hydratase/isomerase MID00_16115 PF00501 AMP-binding enzyme MID00_16115 PF13193 AMP-binding enzyme C-terminal domain MID00_16125 PF04381 Putative exonuclease, RdgC MID00_16130 PF07690 Major Facilitator Superfamily MID00_16130 PF00083 Sugar (and other) transporter MID00_16135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_16135 PF00512 His Kinase A (phospho-acceptor) domain MID00_16140 PF00072 Response regulator receiver domain MID00_16140 PF00486 Transcriptional regulatory protein, C terminal MID00_16145 PF00154 recA bacterial DNA recombination protein MID00_16150 PF02631 RecX family MID00_16155 PF03466 LysR substrate binding domain MID00_16155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_16160 PF08267 Cobalamin-independent synthase, N-terminal domain MID00_16160 PF01717 Cobalamin-independent synthase, Catalytic domain MID00_16170 PF08442 ATP-grasp domain MID00_16170 PF00549 CoA-ligase MID00_16175 PF02629 CoA binding domain MID00_16175 PF00549 CoA-ligase MID00_16180 PF03741 Integral membrane protein TerC family MID00_16185 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain MID00_16185 PF03900 Porphobilinogen deaminase, C-terminal domain MID00_16195 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase MID00_16205 PF00719 Inorganic pyrophosphatase MID00_16210 PF01557 Fumarylacetoacetate (FAA) hydrolase family MID00_16275 PF02798 Glutathione S-transferase, N-terminal domain MID00_16280 PF01909 Nucleotidyltransferase domain MID00_16280 PF13427 Domain of unknown function (DUF4111) MID00_16295 PF04002 RadC-like JAB domain MID00_16320 PF01618 MotA/TolQ/ExbB proton channel family MID00_16325 PF02472 Biopolymer transport protein ExbD/TolR MID00_16350 PF09312 SurA N-terminal domain MID00_16350 PF00639 PPIC-type PPIASE domain MID00_16375 PF06067 Domain of unknown function (DUF932) MID00_16380 PF02195 ParB-like nuclease domain MID00_16385 PF03230 Antirestriction protein MID00_16405 PF05284 Protein of unknown function (DUF736) MID00_16460 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH MID00_16485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_16485 PF03466 LysR substrate binding domain MID00_16490 PF02534 Type IV secretory system Conjugative DNA transfer MID00_16500 PF00437 Type II/IV secretion system protein MID00_16515 PF03135 CagE, TrbE, VirB family, component of type IV transporter system MID00_16545 PF03743 Bacterial conjugation TrbI-like protein MID00_16630 PF04972 BON domain MID00_16630 PF00263 Bacterial type II and III secretion system protein MID00_16630 PF13629 Pilus formation protein N terminal region MID00_16635 PF00437 Type II/IV secretion system protein MID00_16660 PF01636 Phosphotransferase enzyme family MID00_16665 PF01207 Dihydrouridine synthase (Dus) MID00_16675 PF03631 Virulence factor BrkB MID00_16685 PF02696 Uncharacterized ACR, YdiU/UPF0061 family MID00_16690 PF01264 Chorismate synthase MID00_16700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_16700 PF00072 Response regulator receiver domain MID00_16700 PF13426 PAS domain MID00_16700 PF08448 PAS fold MID00_16700 PF00512 His Kinase A (phospho-acceptor) domain MID00_16705 PF00196 Bacterial regulatory proteins, luxR family MID00_16705 PF00072 Response regulator receiver domain MID00_16715 PF02627 Carboxymuconolactone decarboxylase family MID00_16720 PF00155 Aminotransferase class I and II MID00_16720 PF00392 Bacterial regulatory proteins, gntR family MID00_16725 PF00330 Aconitase family (aconitate hydratase) MID00_16730 PF00694 Aconitase C-terminal domain MID00_16735 PF00180 Isocitrate/isopropylmalate dehydrogenase MID00_16740 PF01118 Semialdehyde dehydrogenase, NAD binding domain MID00_16740 PF02774 Semialdehyde dehydrogenase, dimerisation domain MID00_16750 PF01416 tRNA pseudouridine synthase MID00_16760 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID00_16765 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase MID00_16770 PF08534 Redoxin MID00_16780 PF13593 SBF-like CPA transporter family (DUF4137) MID00_16785 PF12833 Helix-turn-helix domain MID00_16790 PF02540 NAD synthase MID00_16790 PF00958 GMP synthase C terminal domain MID00_16790 PF00117 Glutamine amidotransferase class-I MID00_16795 PF02537 CrcB-like protein, Camphor Resistance (CrcB) MID00_16800 PF13193 AMP-binding enzyme C-terminal domain MID00_16800 PF00501 AMP-binding enzyme MID00_16805 PF04461 Protein of unknown function (DUF520) MID00_16815 PF01061 ABC-2 type transporter MID00_16820 PF00005 ABC transporter MID00_16825 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MID00_16830 PF17676 LD-carboxypeptidase C-terminal domain MID00_16830 PF02016 LD-carboxypeptidase N-terminal domain MID00_16835 PF12848 ABC transporter MID00_16835 PF00005 ABC transporter MID00_16840 PF01205 Uncharacterized protein family UPF0029 MID00_16855 PF00085 Thioredoxin MID00_16860 PF00860 Permease family MID00_16865 PF00814 Glycoprotease family MID00_16870 PF02660 Glycerol-3-phosphate acyltransferase MID00_16875 PF01975 Survival protein SurE MID00_16885 PF01476 LysM domain MID00_16885 PF01551 Peptidase family M23 MID00_16890 PF05958 tRNA (Uracil-5-)-methyltransferase MID00_16895 PF02909 Tetracyclin repressor-like, C-terminal domain MID00_16895 PF00440 Bacterial regulatory proteins, tetR family MID00_16900 PF01266 FAD dependent oxidoreductase MID00_16905 PF01804 Penicillin amidase MID00_16925 PF00589 Phage integrase family MID00_16925 PF13495 Phage integrase, N-terminal SAM-like domain MID00_16935 PF00206 Lyase MID00_16935 PF14698 Argininosuccinate lyase C-terminal MID00_16940 PF00924 Mechanosensitive ion channel MID00_16945 PF00543 Nitrogen regulatory protein P-II MID00_16950 PF00248 Aldo/keto reductase family MID00_16955 PF07690 Major Facilitator Superfamily MID00_16960 PF04345 Chorismate lyase MID00_16965 PF01479 S4 domain MID00_16965 PF00849 RNA pseudouridylate synthase MID00_16970 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ MID00_16975 PF03009 Glycerophosphoryl diester phosphodiesterase family MID00_16980 PF00639 PPIC-type PPIASE domain MID00_16980 PF09312 SurA N-terminal domain MID00_16985 PF01551 Peptidase family M23 MID00_16985 PF08525 Opacity-associated protein A N-terminal motif MID00_16985 PF01476 LysM domain MID00_16990 PF03591 AzlC protein MID00_17000 PF04607 Region found in RelA / SpoT proteins MID00_17000 PF02824 TGS domain MID00_17000 PF13291 ACT domain MID00_17005 PF01192 RNA polymerase Rpb6 MID00_17010 PF00625 Guanylate kinase MID00_17030 PF01276 Orn/Lys/Arg decarboxylase, major domain MID00_17030 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain MID00_17030 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain MID00_17035 PF03466 LysR substrate binding domain MID00_17035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_17055 PF00108 Thiolase, N-terminal domain MID00_17055 PF02803 Thiolase, C-terminal domain MID00_17060 PF02803 Thiolase, C-terminal domain MID00_17060 PF00108 Thiolase, N-terminal domain MID00_17080 PF00005 ABC transporter MID00_17085 PF00529 HlyD membrane-fusion protein of T1SS MID00_17085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID00_17090 PF00873 AcrB/AcrD/AcrF family MID00_17095 PF02321 Outer membrane efflux protein MID00_17100 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ MID00_17110 PF00376 MerR family regulatory protein MID00_17110 PF09278 MerR, DNA binding MID00_17115 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MID00_17115 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID00_17120 PF01022 Bacterial regulatory protein, arsR family MID00_17125 PF03764 Elongation factor G, domain IV MID00_17125 PF14492 Elongation Factor G, domain II MID00_17125 PF03144 Elongation factor Tu domain 2 MID00_17125 PF00679 Elongation factor G C-terminus MID00_17125 PF00009 Elongation factor Tu GTP binding domain MID00_17130 PF02630 SCO1/SenC MID00_17135 PF01432 Peptidase family M3 MID00_17140 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain MID00_17140 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain MID00_17145 PF00196 Bacterial regulatory proteins, luxR family MID00_17145 PF00072 Response regulator receiver domain MID00_17150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_17150 PF00512 His Kinase A (phospho-acceptor) domain MID00_17150 PF00989 PAS fold MID00_17155 PF17831 Pyruvate dehydrogenase E1 component middle domain MID00_17155 PF00456 Transketolase, thiamine diphosphate binding domain MID00_17160 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MID00_17160 PF02817 e3 binding domain MID00_17160 PF00364 Biotin-requiring enzyme MID00_17165 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID00_17165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MID00_17170 PF02875 Mur ligase family, glutamate ligase domain MID00_17170 PF08245 Mur ligase middle domain MID00_17180 PF02674 Colicin V production protein MID00_17185 PF00156 Phosphoribosyl transferase domain MID00_17190 PF00144 Beta-lactamase MID00_17200 PF01914 MarC family integral membrane protein MID00_17205 PF08335 GlnD PII-uridylyltransferase MID00_17205 PF01909 Nucleotidyltransferase domain MID00_17205 PF01966 HD domain MID00_17210 PF00557 Metallopeptidase family M24 MID00_17215 PF00318 Ribosomal protein S2 MID00_17220 PF00889 Elongation factor TS MID00_17225 PF00696 Amino acid kinase family MID00_17230 PF01765 Ribosome recycling factor MID00_17235 PF01255 Putative undecaprenyl diphosphate synthase MID00_17245 PF13288 DXP reductoisomerase C-terminal domain MID00_17245 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase MID00_17245 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain MID00_17250 PF02163 Peptidase family M50 MID00_17250 PF17820 PDZ domain MID00_17250 PF13180 PDZ domain MID00_17255 PF07244 Surface antigen variable number repeat MID00_17255 PF01103 Surface antigen MID00_17260 PF03938 Outer membrane protein (OmpH-like) MID00_17265 PF00132 Bacterial transferase hexapeptide (six repeats) MID00_17265 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD MID00_17270 PF07977 FabA-like domain MID00_17275 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 MID00_17275 PF00132 Bacterial transferase hexapeptide (six repeats) MID00_17280 PF02684 Lipid-A-disaccharide synthetase MID00_17285 PF01351 Ribonuclease HII MID00_17290 PF08032 RNA 2'-O ribose methyltransferase substrate binding MID00_17290 PF00588 SpoU rRNA Methylase family MID00_17295 PF01425 Amidase MID00_17300 PF03618 Kinase/pyrophosphorylase MID00_17305 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MID00_17305 PF02896 PEP-utilising enzyme, TIM barrel domain MID00_17305 PF00391 PEP-utilising enzyme, mobile domain MID00_17310 PF00440 Bacterial regulatory proteins, tetR family MID00_17315 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID00_17320 PF01668 SmpB protein MID00_17325 PF03364 Polyketide cyclase / dehydrase and lipid transport MID00_17330 PF03658 RnfH family Ubiquitin MID00_17335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MID00_17335 PF02770 Acyl-CoA dehydrogenase, middle domain MID00_17335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID00_17345 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MID00_17345 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MID00_17350 PF01571 Aminomethyltransferase folate-binding domain MID00_17355 PF02618 YceG-like family MID00_17365 PF09115 DNA polymerase III, delta subunit, C terminal MID00_17370 PF01026 TatD related DNase MID00_17385 PF03358 NADPH-dependent FMN reductase MID00_17400 PF02798 Glutathione S-transferase, N-terminal domain MID00_17400 PF00043 Glutathione S-transferase, C-terminal domain MID00_17405 PF03960 ArsC family MID00_17410 PF04264 YceI-like domain MID00_17420 PF01292 Prokaryotic cytochrome b561 MID00_17455 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MID00_17500 PF12419 SNF2 Helicase protein MID00_17500 PF00271 Helicase conserved C-terminal domain MID00_17500 PF00176 SNF2 family N-terminal domain MID00_17515 PF01609 Transposase DDE domain MID00_17515 PF05598 Transposase domain (DUF772) MID00_17525 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) MID00_17530 PF00990 Diguanylate cyclase, GGDEF domain MID00_17530 PF03707 Bacterial signalling protein N terminal repeat MID00_17530 PF00563 EAL domain MID00_17590 PF04002 RadC-like JAB domain MID00_17620 PF11798 IMS family HHH motif MID00_17620 PF13438 Domain of unknown function (DUF4113) MID00_17620 PF11799 impB/mucB/samB family C-terminal domain MID00_17620 PF00817 impB/mucB/samB family MID00_17625 PF00717 Peptidase S24-like MID00_17630 PF02796 Helix-turn-helix domain of resolvase MID00_17630 PF00239 Resolvase, N terminal domain MID00_17645 PF13610 DDE domain MID00_17660 PF00809 Pterin binding enzyme MID00_17665 PF00893 Small Multidrug Resistance protein MID00_17680 PF13610 DDE domain MID00_17685 PF02909 Tetracyclin repressor-like, C-terminal domain MID00_17685 PF00440 Bacterial regulatory proteins, tetR family MID00_17690 PF07690 Major Facilitator Superfamily MID00_17700 PF00589 Phage integrase family MID00_17705 PF13610 DDE domain MID00_17725 PF13098 Thioredoxin-like domain MID00_17725 PF10411 Disulfide bond isomerase protein N-terminus MID00_17740 PF01402 Ribbon-helix-helix protein, copG family MID00_17750 PF11455 Protein of unknown function (DUF3018) MID00_17755 PF00271 Helicase conserved C-terminal domain MID00_17755 PF00176 SNF2 family N-terminal domain MID00_17770 PF01555 DNA methylase MID00_17770 PF18273 Type III R-M EcoP15I C-terminal domain MID00_17780 PF04851 Type III restriction enzyme, res subunit MID00_17780 PF08774 VRR-NUC domain MID00_17900 PF03976 Polyphosphate kinase 2 (PPK2) MID00_17910 PF02222 ATP-grasp domain MID00_17915 PF00394 Multicopper oxidase MID00_17915 PF07731 Multicopper oxidase MID00_17915 PF07732 Multicopper oxidase MID00_17925 PF02899 Phage integrase, N-terminal SAM-like domain MID00_17925 PF00589 Phage integrase family MID00_17930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_17930 PF03466 LysR substrate binding domain MID00_17945 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ MID00_17950 PF00403 Heavy-metal-associated domain MID00_17965 PF03466 LysR substrate binding domain MID00_17965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_17975 PF07690 Major Facilitator Superfamily MID00_17980 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID00_17985 PF00582 Universal stress protein family MID00_17990 PF07995 Glucose / Sorbosone dehydrogenase MID00_17995 PF10415 Fumarase C C-terminus MID00_17995 PF00206 Lyase MID00_18000 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MID00_18000 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MID00_18010 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MID00_18010 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MID00_18015 PF00326 Prolyl oligopeptidase family MID00_18020 PF02798 Glutathione S-transferase, N-terminal domain MID00_18020 PF00043 Glutathione S-transferase, C-terminal domain MID00_18025 PF00005 ABC transporter MID00_18030 PF00005 ABC transporter MID00_18030 PF12399 Branched-chain amino acid ATP-binding cassette transporter MID00_18035 PF02653 Branched-chain amino acid transport system / permease component MID00_18035 PF11862 Domain of unknown function (DUF3382) MID00_18040 PF02653 Branched-chain amino acid transport system / permease component MID00_18045 PF13458 Periplasmic binding protein MID00_18050 PF14748 Pyrroline-5-carboxylate reductase dimerisation MID00_18050 PF03807 NADP oxidoreductase coenzyme F420-dependent MID00_18055 PF13416 Bacterial extracellular solute-binding protein MID00_18060 PF00528 Binding-protein-dependent transport system inner membrane component MID00_18065 PF00528 Binding-protein-dependent transport system inner membrane component MID00_18070 PF00005 ABC transporter MID00_18070 PF17912 MalK OB fold domain MID00_18075 PF13458 Periplasmic binding protein MID00_18080 PF00210 Ferritin-like domain MID00_18085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_18085 PF03466 LysR substrate binding domain MID00_18090 PF00270 DEAD/DEAH box helicase MID00_18090 PF00271 Helicase conserved C-terminal domain MID00_18090 PF17191 RecG wedge domain MID00_18095 PF01042 Endoribonuclease L-PSP MID00_18100 PF00175 Oxidoreductase NAD-binding domain MID00_18100 PF00970 Oxidoreductase FAD-binding domain MID00_18110 PF00528 Binding-protein-dependent transport system inner membrane component MID00_18115 PF08402 TOBE domain MID00_18115 PF00005 ABC transporter MID00_18130 PF03466 LysR substrate binding domain MID00_18130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_18135 PF13673 Acetyltransferase (GNAT) domain MID00_18140 PF00120 Glutamine synthetase, catalytic domain MID00_18140 PF03951 Glutamine synthetase, beta-Grasp domain MID00_18145 PF04055 Radical SAM superfamily MID00_18145 PF06969 HemN C-terminal domain MID00_18150 PF01725 Ham1 family MID00_18155 PF01138 3' exoribonuclease family, domain 1 MID00_18155 PF03725 3' exoribonuclease family, domain 2 MID00_18160 PF13175 AAA ATPase domain MID00_18165 PF00149 Calcineurin-like phosphoesterase MID00_18170 PF08340 Domain of unknown function (DUF1732) MID00_18170 PF03755 YicC-like family, N-terminal region MID00_18175 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain MID00_18175 PF00293 NUDIX domain MID00_18175 PF09297 NADH pyrophosphatase zinc ribbon domain MID00_18185 PF01494 FAD binding domain MID00_18205 PF07690 Major Facilitator Superfamily MID00_18215 PF07687 Peptidase dimerisation domain MID00_18215 PF01546 Peptidase family M20/M25/M40 MID00_18220 PF00011 Hsp20/alpha crystallin family MID00_18225 PF00860 Permease family MID00_18230 PF01979 Amidohydrolase family MID00_18235 PF03069 Acetamidase/Formamidase family MID00_18245 PF07715 TonB-dependent Receptor Plug Domain MID00_18245 PF00593 TonB dependent receptor MID00_18250 PF13247 4Fe-4S dicluster domain MID00_18255 PF03916 Polysulphide reductase, NrfD MID00_18260 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MID00_18260 PF00384 Molybdopterin oxidoreductase MID00_18260 PF01568 Molydopterin dinucleotide binding domain MID00_18265 PF03668 P-loop ATPase protein family MID00_18270 PF00677 Lumazine binding domain MID00_18280 PF00106 short chain dehydrogenase MID00_18285 PF00296 Luciferase-like monooxygenase MID00_18300 PF13677 Membrane MotB of proton-channel complex MotA/MotB MID00_18300 PF00691 OmpA family MID00_18305 PF01618 MotA/TolQ/ExbB proton channel family MID00_18315 PF00768 D-alanyl-D-alanine carboxypeptidase MID00_18320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_18320 PF03466 LysR substrate binding domain MID00_18325 PF03401 Tripartite tricarboxylate transporter family receptor MID00_18360 PF07733 Bacterial DNA polymerase III alpha NTPase domain MID00_18360 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MID00_18360 PF14579 Helix-hairpin-helix motif MID00_18360 PF02811 PHP domain MID00_18365 PF09424 Yqey-like protein MID00_18375 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MID00_18380 PF02080 TrkA-C domain MID00_18380 PF02254 TrkA-N domain MID00_18385 PF02386 Cation transport protein MID00_18400 PF03781 Sulfatase-modifying factor enzyme 1 MID00_18415 PF01266 FAD dependent oxidoreductase MID00_18420 PF00291 Pyridoxal-phosphate dependent enzyme MID00_18425 PF17853 GGDEF-like domain MID00_18425 PF12833 Helix-turn-helix domain MID00_18430 PF08990 Erythronolide synthase docking MID00_18430 PF00698 Acyl transferase domain MID00_18430 PF08240 Alcohol dehydrogenase GroES-like domain MID00_18430 PF00109 Beta-ketoacyl synthase, N-terminal domain MID00_18430 PF02801 Beta-ketoacyl synthase, C-terminal domain MID00_18430 PF08659 KR domain MID00_18430 PF00550 Phosphopantetheine attachment site MID00_18430 PF14765 Polyketide synthase dehydratase MID00_18430 PF16197 Ketoacyl-synthetase C-terminal extension MID00_18460 PF13673 Acetyltransferase (GNAT) domain MID00_18470 PF07364 Metallopeptidase family M81 MID00_18470 PF07171 MlrC C-terminus MID00_18475 PF07687 Peptidase dimerisation domain MID00_18475 PF01546 Peptidase family M20/M25/M40 MID00_18480 PF00795 Carbon-nitrogen hydrolase MID00_18485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID00_18485 PF00005 ABC transporter MID00_18490 PF00528 Binding-protein-dependent transport system inner membrane component MID00_18495 PF00528 Binding-protein-dependent transport system inner membrane component MID00_18500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MID00_18505 PF07687 Peptidase dimerisation domain MID00_18505 PF01546 Peptidase family M20/M25/M40 MID00_18510 PF00291 Pyridoxal-phosphate dependent enzyme MID00_18515 PF01418 Helix-turn-helix domain, rpiR family MID00_18515 PF01380 SIS domain MID00_18535 PF01522 Polysaccharide deacetylase MID00_18535 PF14883 Hypothetical glycosyl hydrolase family 13 MID00_18540 PF00535 Glycosyl transferase family 2 MID00_18555 PF10614 Type VIII secretion system (T8SS), CsgF protein MID00_18560 PF03783 Curli production assembly/transport component CsgG MID00_18570 PF00072 Response regulator receiver domain MID00_18570 PF00196 Bacterial regulatory proteins, luxR family MID00_18575 PF01883 Iron-sulfur cluster assembly protein MID00_18580 PF01592 NifU-like N terminal domain MID00_18585 PF00266 Aminotransferase class-V MID00_18590 PF01458 Uncharacterized protein family (UPF0051) MID00_18595 PF00005 ABC transporter MID00_18600 PF01458 Uncharacterized protein family (UPF0051) MID00_18605 PF02082 Transcriptional regulator MID00_18610 PF00005 ABC transporter MID00_18610 PF00664 ABC transporter transmembrane region MID00_18625 PF04305 Protein of unknown function (DUF455) MID00_18635 PF00216 Bacterial DNA-binding protein MID00_18640 PF03483 B3/4 domain MID00_18640 PF03484 tRNA synthetase B5 domain MID00_18640 PF03147 Ferredoxin-fold anticodon binding domain MID00_18640 PF01588 Putative tRNA binding domain MID00_18640 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MID00_18645 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain MID00_18645 PF01409 tRNA synthetases class II core domain (F) MID00_18650 PF00453 Ribosomal protein L20 MID00_18655 PF01632 Ribosomal protein L35 MID00_18670 PF13335 Magnesium chelatase, subunit ChlI C-terminal MID00_18670 PF01078 Magnesium chelatase, subunit ChlI MID00_18695 PF05524 PEP-utilising enzyme, N-terminal MID00_18695 PF00391 PEP-utilising enzyme, mobile domain MID00_18695 PF02896 PEP-utilising enzyme, TIM barrel domain MID00_18700 PF00381 PTS HPr component phosphorylation site MID00_18710 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain MID00_18710 PF02951 Prokaryotic glutathione synthetase, N-terminal domain MID00_18715 PF00707 Translation initiation factor IF-3, C-terminal domain MID00_18715 PF05198 Translation initiation factor IF-3, N-terminal domain MID00_18720 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MID00_18720 PF02824 TGS domain MID00_18720 PF03129 Anticodon binding domain MID00_18720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MID00_18740 PF00294 pfkB family carbohydrate kinase MID00_18750 PF03891 Domain of unknown function (DUF333) MID00_18765 PF01957 NfeD-like C-terminal, partner-binding MID00_18770 PF01145 SPFH domain / Band 7 family MID00_18770 PF16200 C-terminal region of band_7 MID00_18790 PF00860 Permease family MID00_18795 PF01979 Amidohydrolase family MID00_18805 PF00356 Bacterial regulatory proteins, lacI family MID00_18815 PF01810 LysE type translocator MID00_18820 PF07690 Major Facilitator Superfamily MID00_18825 PF00106 short chain dehydrogenase MID00_18830 PF00111 2Fe-2S iron-sulfur cluster binding domain MID00_18830 PF00175 Oxidoreductase NAD-binding domain MID00_18830 PF00970 Oxidoreductase FAD-binding domain MID00_18835 PF00866 Ring hydroxylating beta subunit MID00_18840 PF00355 Rieske [2Fe-2S] domain MID00_18840 PF00848 Ring hydroxylating alpha subunit (catalytic domain) MID00_18845 PF03466 LysR substrate binding domain MID00_18845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_18850 PF00970 Oxidoreductase FAD-binding domain MID00_18850 PF00111 2Fe-2S iron-sulfur cluster binding domain MID00_18850 PF00175 Oxidoreductase NAD-binding domain MID00_18855 PF04663 Phenol hydroxylase conserved region MID00_18860 PF02332 Methane/Phenol/Toluene Hydroxylase MID00_18860 PF04945 YHS domain MID00_18865 PF02406 MmoB/DmpM family MID00_18870 PF02332 Methane/Phenol/Toluene Hydroxylase MID00_18875 PF06099 Phenol hydroxylase subunit MID00_18880 PF02954 Bacterial regulatory protein, Fis family MID00_18880 PF00158 Sigma-54 interaction domain MID00_18880 PF02830 V4R domain MID00_18880 PF06505 Activator of aromatic catabolism MID00_18900 PF00005 ABC transporter MID00_18905 PF00528 Binding-protein-dependent transport system inner membrane component MID00_18910 PF00528 Binding-protein-dependent transport system inner membrane component MID00_18915 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID00_18940 PF07411 Domain of unknown function (DUF1508) MID00_18945 PF03006 Haemolysin-III related MID00_18960 PF07969 Amidohydrolase family MID00_18965 PF00248 Aldo/keto reductase family MID00_18970 PF02445 Quinolinate synthetase A protein MID00_18975 PF02910 Fumarate reductase flavoprotein C-term MID00_18975 PF00890 FAD binding domain MID00_18980 PF01266 FAD dependent oxidoreductase MID00_18990 PF18081 Fanconi anemia-associated nuclease SAP domain MID00_18990 PF08774 VRR-NUC domain MID00_19000 PF00892 EamA-like transporter family MID00_19005 PF00155 Aminotransferase class I and II MID00_19005 PF00392 Bacterial regulatory proteins, gntR family MID00_19010 PF01168 Alanine racemase, N-terminal domain MID00_19020 PF07690 Major Facilitator Superfamily MID00_19025 PF01494 FAD binding domain MID00_19030 PF12802 MarR family MID00_19055 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MID00_19055 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MID00_19060 PF00196 Bacterial regulatory proteins, luxR family MID00_19060 PF00072 Response regulator receiver domain MID00_19065 PF00850 Histone deacetylase domain MID00_19070 PF00005 ABC transporter MID00_19075 PF02535 ZIP Zinc transporter MID00_19080 PF01926 50S ribosome-binding GTPase MID00_19085 PF01926 50S ribosome-binding GTPase MID00_19090 PF03594 Benzoate membrane transport protein MID00_19095 PF02426 Muconolactone delta-isomerase MID00_19100 PF12146 Serine aminopeptidase, S33 MID00_19105 PF01144 Coenzyme A transferase MID00_19110 PF01144 Coenzyme A transferase MID00_19115 PF04444 Catechol dioxygenase N terminus MID00_19115 PF00775 Dioxygenase MID00_19120 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MID00_19120 PF13378 Enolase C-terminal domain-like MID00_19125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_19125 PF03466 LysR substrate binding domain MID00_19140 PF08502 LeuA allosteric (dimerisation) domain MID00_19140 PF00682 HMGL-like MID00_19145 PF12833 Helix-turn-helix domain MID00_19145 PF02311 AraC-like ligand binding domain MID00_19165 PF01022 Bacterial regulatory protein, arsR family MID00_19170 PF02627 Carboxymuconolactone decarboxylase family MID00_19190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID00_19190 PF02770 Acyl-CoA dehydrogenase, middle domain MID00_19190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MID00_19195 PF13193 AMP-binding enzyme C-terminal domain MID00_19195 PF00501 AMP-binding enzyme MID00_19200 PF02515 CoA-transferase family III MID00_19205 PF02597 ThiS family MID00_19210 PF14464 Prokaryotic homologs of the JAB domain MID00_19215 PF00581 Rhodanese-like domain MID00_19215 PF00899 ThiF family MID00_19225 PF00891 O-methyltransferase domain MID00_19250 PF00574 Clp protease MID00_19255 PF02798 Glutathione S-transferase, N-terminal domain MID00_19290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_19290 PF03466 LysR substrate binding domain MID00_19295 PF03060 Nitronate monooxygenase MID00_19305 PF00042 Globin MID00_19305 PF00175 Oxidoreductase NAD-binding domain MID00_19305 PF00970 Oxidoreductase FAD-binding domain MID00_19310 PF14552 Tautomerase enzyme MID00_19320 PF08543 Phosphomethylpyrimidine kinase MID00_19325 PF00072 Response regulator receiver domain MID00_19325 PF00486 Transcriptional regulatory protein, C terminal MID00_19330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_19330 PF00512 His Kinase A (phospho-acceptor) domain MID00_19330 PF08448 PAS fold MID00_19330 PF13426 PAS domain MID00_19330 PF00072 Response regulator receiver domain MID00_19340 PF01970 Tripartite tricarboxylate transporter TctA family MID00_19345 PF01966 HD domain MID00_19350 PF07690 Major Facilitator Superfamily MID00_19355 PF07690 Major Facilitator Superfamily MID00_19360 PF03466 LysR substrate binding domain MID00_19360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_19365 PF01502 Phosphoribosyl-AMP cyclohydrolase MID00_19370 PF01475 Ferric uptake regulator family MID00_19375 PF01979 Amidohydrolase family MID00_19380 PF02657 Fe-S metabolism associated domain MID00_19385 PF01809 Putative membrane protein insertion efficiency factor MID00_19390 PF02649 Type I GTP cyclohydrolase folE2 MID00_19395 PF02492 CobW/HypB/UreG, nucleotide-binding domain MID00_19395 PF07683 Cobalamin synthesis protein cobW C-terminal domain MID00_19400 PF08279 HTH domain MID00_19400 PF13280 WYL domain MID00_19410 PF18158 Adaptive response protein AidB N-terminal domain MID00_19410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MID00_19410 PF02770 Acyl-CoA dehydrogenase, middle domain MID00_19420 PF01717 Cobalamin-independent synthase, Catalytic domain MID00_19430 PF01717 Cobalamin-independent synthase, Catalytic domain MID00_19430 PF08267 Cobalamin-independent synthase, N-terminal domain MID00_19435 PF03466 LysR substrate binding domain MID00_19435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID00_19445 PF02540 NAD synthase MID00_19445 PF00958 GMP synthase C terminal domain MID00_19445 PF00117 Glutamine amidotransferase class-I MID00_19465 PF00478 IMP dehydrogenase / GMP reductase domain MID00_19465 PF00571 CBS domain MID00_19470 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal MID00_19470 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain MID00_19470 PF02769 AIR synthase related protein, C-terminal domain MID00_19475 PF01272 Transcription elongation factor, GreA/GreB, C-term MID00_19475 PF03449 Transcription elongation factor, N-terminal MID00_19480 PF02811 PHP domain MID00_19490 PF03772 Competence protein MID00_19490 PF00753 Metallo-beta-lactamase superfamily MID00_19495 PF01026 TatD related DNase MID00_19500 PF00005 ABC transporter MID00_19505 PF02687 FtsX-like permease family MID00_19505 PF12704 MacB-like periplasmic core domain MID00_19515 PF01368 DHH family MID00_19515 PF02272 DHHA1 domain MID00_19515 PF17768 RecJ OB domain MID00_19525 PF01758 Sodium Bile acid symporter family MID00_19530 PF00892 EamA-like transporter family MID00_19535 PF01176 Translation initiation factor 1A / IF-1 MID00_19540 PF00672 HAMP domain MID00_19540 PF02203 Tar ligand binding domain homologue MID00_19540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID00_19550 PF00106 short chain dehydrogenase MID00_19555 PF01336 OB-fold nucleic acid binding domain MID00_19555 PF00152 tRNA synthetases class II (D, K and N) MID00_19560 PF03401 Tripartite tricarboxylate transporter family receptor MID00_19565 PF02142 MGS-like domain MID00_19570 PF01521 Iron-sulphur cluster biosynthesis MID00_19575 PF01592 NifU-like N terminal domain MID00_19580 PF00266 Aminotransferase class-V MID00_19585 PF02082 Transcriptional regulator MID00_19590 PF01451 Low molecular weight phosphotyrosine protein phosphatase MID00_19595 PF00271 Helicase conserved C-terminal domain MID00_19595 PF04851 Type III restriction enzyme, res subunit MID00_19595 PF02151 UvrB/uvrC motif MID00_19595 PF12344 Ultra-violet resistance protein B MID00_19595 PF17757 UvrB interaction domain MID00_19600 PF00155 Aminotransferase class I and II MID00_19605 PF13302 Acetyltransferase (GNAT) domain MID00_19610 PF00717 Peptidase S24-like MID00_19610 PF01726 LexA DNA binding domain MID00_19615 PF00004 ATPase family associated with various cellular activities (AAA) MID00_19615 PF05362 Lon protease (S16) C-terminal proteolytic domain MID00_19615 PF02190 ATP-dependent protease La (LON) substrate-binding domain MID00_19620 PF07724 AAA domain (Cdc48 subfamily) MID00_19620 PF10431 C-terminal, D2-small domain, of ClpB protein MID00_19620 PF06689 ClpX C4-type zinc finger MID00_19625 PF00574 Clp protease MID00_19630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MID00_19630 PF05697 Bacterial trigger factor protein (TF) MID00_19630 PF05698 Bacterial trigger factor protein (TF) C-terminus MID00_19635 PF02515 CoA-transferase family III MID00_19645 PF00589 Phage integrase family MID00_19670 PF00182 Chitinase class I MID00_19905 PF00313 'Cold-shock' DNA-binding domain MID00_19925 PF00436 Single-strand binding protein family MID00_19940 PF04381 Putative exonuclease, RdgC MID00_19960 PF05869 DNA N-6-adenine-methyltransferase (Dam) MID00_19985 PF07690 Major Facilitator Superfamily MID00_19990 PF00376 MerR family regulatory protein MID00_19990 PF09278 MerR, DNA binding MID00_20030 PF03600 Citrate transporter MID00_20030 PF02080 TrkA-C domain MID00_20040 PF12833 Helix-turn-helix domain MID00_20040 PF02311 AraC-like ligand binding domain MID00_20050 PF00132 Bacterial transferase hexapeptide (six repeats) MID00_20050 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal MID00_20050 PF14602 Hexapeptide repeat of succinyl-transferase MID00_20055 PF07687 Peptidase dimerisation domain MID00_20055 PF01546 Peptidase family M20/M25/M40 MID00_20060 PF05175 Methyltransferase small domain MID00_20065 PF00005 ABC transporter MID00_20065 PF12848 ABC transporter MID00_20090 PF13533 Biotin-lipoyl like MID00_20095 PF02909 Tetracyclin repressor-like, C-terminal domain MID00_20095 PF00440 Bacterial regulatory proteins, tetR family MID00_20120 PF00580 UvrD/REP helicase N-terminal domain MID00_20120 PF13361 UvrD-like helicase C-terminal domain MID00_20130 PF01189 16S rRNA methyltransferase RsmB/F MID00_20130 PF01029 NusB family MID00_20135 PF00551 Formyl transferase MID00_20140 PF01687 Riboflavin kinase MID00_20140 PF06574 FAD synthetase MID00_20145 PF06827 Zinc finger found in FPG and IleRS MID00_20145 PF00133 tRNA synthetases class I (I, L, M and V) MID00_20145 PF08264 Anticodon-binding domain of tRNA MID00_20150 PF01252 Signal peptidase (SPase) II MID00_20155 PF02441 Flavoprotein MID00_20155 PF04127 DNA / pantothenate metabolism flavoprotein MID00_20160 PF00692 dUTPase MID00_20165 PF05971 RNA methyltransferase MID00_20185 PF00005 ABC transporter MID00_20190 PF12399 Branched-chain amino acid ATP-binding cassette transporter MID00_20190 PF00005 ABC transporter MID00_20195 PF11862 Domain of unknown function (DUF3382) MID00_20195 PF02653 Branched-chain amino acid transport system / permease component MID00_20200 PF02653 Branched-chain amino acid transport system / permease component MID00_20205 PF13458 Periplasmic binding protein MID00_20210 PF01619 Proline dehydrogenase MID00_20210 PF00171 Aldehyde dehydrogenase family MID00_20210 PF18327 Proline utilization A proline dehydrogenase N-terminal domain MID00_20210 PF14850 DNA-binding domain of Proline dehydrogenase MID00_20220 PF02470 MlaD protein MID00_20225 PF04403 Paraquat-inducible protein A MID00_20230 PF10431 C-terminal, D2-small domain, of ClpB protein MID00_20230 PF02861 Clp amino terminal domain, pathogenicity island component MID00_20230 PF17871 AAA lid domain MID00_20230 PF07724 AAA domain (Cdc48 subfamily) MID00_20230 PF00004 ATPase family associated with various cellular activities (AAA) MID00_20235 PF02617 ATP-dependent Clp protease adaptor protein ClpS MID00_20240 PF00313 'Cold-shock' DNA-binding domain MID00_20250 PF00108 Thiolase, N-terminal domain MID00_20250 PF02803 Thiolase, C-terminal domain MID00_20255 PF01569 PAP2 superfamily MID00_20260 PF00210 Ferritin-like domain MID00_20265 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MID00_20265 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MID00_20270 PF13742 OB-fold nucleic acid binding domain MID00_20270 PF02601 Exonuclease VII, large subunit MID00_20275 PF01618 MotA/TolQ/ExbB proton channel family MID00_20280 PF02472 Biopolymer transport protein ExbD/TolR MID00_20285 PF02606 Tetraacyldisaccharide-1-P 4'-kinase MID00_20290 PF03966 Trm112p-like protein MID00_20295 PF02348 Cytidylyltransferase MID00_20300 PF05191 Adenylate kinase, active site lid MID00_20305 PF00106 short chain dehydrogenase MID00_20310 PF03023 Lipid II flippase MurJ MID00_20315 PF01649 Ribosomal protein S20 MID00_20320 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MID00_20320 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MID00_20330 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MID00_20330 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MID00_20335 PF00072 Response regulator receiver domain MID00_20335 PF00486 Transcriptional regulatory protein, C terminal MID00_20340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID00_20340 PF02702 Osmosensitive K+ channel His kinase sensor domain MID00_20340 PF00512 His Kinase A (phospho-acceptor) domain MID00_20340 PF13492 GAF domain MID00_20340 PF13493 Domain of unknown function (DUF4118) MID00_20350 PF02669 K+-transporting ATPase, c chain MID00_20355 PF03814 Potassium-transporting ATPase A subunit MID00_20365 PF00117 Glutamine amidotransferase class-I MID00_20365 PF00958 GMP synthase C terminal domain MID00_20365 PF02540 NAD synthase MID00_20370 PF00356 Bacterial regulatory proteins, lacI family MID00_20375 PF01547 Bacterial extracellular solute-binding protein MID00_20385 PF00528 Binding-protein-dependent transport system inner membrane component MID00_20390 PF08402 TOBE domain MID00_20390 PF00005 ABC transporter MID00_20395 PF00149 Calcineurin-like phosphoesterase MID00_20400 PF00764 Arginosuccinate synthase MID00_20410 PF04304 Protein of unknown function (DUF454) MID00_20415 PF00293 NUDIX domain MID00_20425 PF01053 Cys/Met metabolism PLP-dependent enzyme MID00_20430 PF01037 Lrp/AsnC ligand binding domain MID00_20430 PF13404 AsnC-type helix-turn-helix domain MID00_20445 PF00990 Diguanylate cyclase, GGDEF domain MID00_20495 PF00959 Phage lysozyme MID00_20505 PF00589 Phage integrase family