locus-tag	class	description
JYG33_00010	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JYG33_00020	COG0183	Belongs to the thiolase family
JYG33_00025	COG0318	PFAM AMP-dependent synthetase and ligase
JYG33_00035	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_00040	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
JYG33_00065	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
JYG33_00095	COG3829	transcription factor binding
JYG33_00100	COG0039	L-malate dehydrogenase activity
JYG33_00105	COG2188	Transcriptional regulator
JYG33_00110	COG2009	succinate dehydrogenase
JYG33_00120	COG1053	succinate dehydrogenase
JYG33_00125	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JYG33_00130	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
JYG33_00135	COG0372	Belongs to the citrate synthase family
JYG33_00155	COG0281	malic enzyme
JYG33_00155	COG0280	phosphate acetyltransferase
JYG33_00160	COG0567	Dehydrogenase, E1 component
JYG33_00165	COG0508	dehydrogenase complex catalyzes the overall conversion of
JYG33_00170	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JYG33_00175	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
JYG33_00195	COG2183	response to ionizing radiation
JYG33_00200	COG1199	ATP-dependent helicase activity
JYG33_00210	COG1733	regulation of RNA biosynthetic process
JYG33_00230	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JYG33_00255	COG0564	pseudouridine synthase activity
JYG33_00265	COG3243	poly(R)-hydroxyalkanoic acid synthase
JYG33_00270	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_00275	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
JYG33_00300	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
JYG33_00305	COG1187	pseudouridine synthase activity
JYG33_00310	COG0779	Required for maturation of 30S ribosomal subunits
JYG33_00315	COG2251	uridine kinase activity
JYG33_00315	COG0195	Participates in both transcription termination and antitermination
JYG33_00320	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
JYG33_00325	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JYG33_00330	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
JYG33_00335	COG1217	gtp-binding protein TYPA
JYG33_00340	COG0446	pyridine nucleotide-disulphide oxidoreductase
JYG33_00350	COG4160	amino acid transport
JYG33_00355	COG4215	(ABC) transporter
JYG33_00360	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYG33_00375	COG1283	sodium-dependent phosphate transmembrane transporter activity
JYG33_00390	COG0456	acetyltransferase
JYG33_00400	COG0501	Belongs to the peptidase M48B family
JYG33_00415	COG1722	exodeoxyribonuclease VII activity
JYG33_00420	COG0142	geranyltranstransferase activity
JYG33_00430	COG1469	GTP cyclohydrolase I activity
JYG33_00435	COG0360	Binds together with S18 to 16S ribosomal RNA
JYG33_00440	COG2965	DNA replication, synthesis of RNA primer
JYG33_00445	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JYG33_00455	COG0305	Participates in initiation and elongation during chromosome replication
JYG33_00465	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
JYG33_00470	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
JYG33_00475	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
JYG33_00485	COG0436	Aminotransferase
JYG33_00500	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JYG33_00505	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
JYG33_00510	COG1562	ergosterol biosynthetic process
JYG33_00515	COG1562	ergosterol biosynthetic process
JYG33_00520	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JYG33_00525	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_00550	COG3842	ATPase activity
JYG33_00555	COG1176	ABC-type spermidine putrescine transport system, permease component I
JYG33_00560	COG1177	transmembrane transport
JYG33_00570	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
JYG33_00575	COG0704	Plays a role in the regulation of phosphate uptake
JYG33_00580	COG5001	Diguanylate cyclase
JYG33_00580	COG2203	Gaf domain
JYG33_00580	COG4251	negative regulation of phosphorylation
JYG33_00580	COG3706	GGDEF domain
JYG33_00585	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
JYG33_00590	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JYG33_00590	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JYG33_00595	COG1643	Atp-dependent helicase
JYG33_00605	COG0438	transferase activity, transferring glycosyl groups
JYG33_00610	COG0726	polysaccharide deacetylase
JYG33_00625	COG0297	glycogen (starch) synthase activity
JYG33_00650	COG1132	(ABC) transporter
JYG33_00665	COG1530	ribonuclease E activity
JYG33_00705	COG2186	Transcriptional regulator
JYG33_00710	COG0277	FAD linked oxidase domain protein
JYG33_00715	COG0277	FAD linked oxidase domain protein
JYG33_00720	COG0247	lactate metabolic process
JYG33_00730	COG1272	protein, Hemolysin III
JYG33_00750	COG0628	permease
JYG33_00755	COG1283	sodium-dependent phosphate transmembrane transporter activity
JYG33_00770	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JYG33_00780	COG0697	spore germination
JYG33_00800	COG3094	Invasion gene expression up-regulator, SirB
JYG33_00810	COG0640	Transcriptional regulator
JYG33_00835	COG0659	secondary active sulfate transmembrane transporter activity
JYG33_00840	COG1262	PFAM Formylglycine-generating sulfatase enzyme
JYG33_00850	COG2314	TM2 domain
JYG33_00855	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JYG33_00860	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JYG33_00865	COG0791	NLP P60 protein
JYG33_00885	COG1360	Flagellar Motor Protein
JYG33_00895	COG0835	chemotaxis
JYG33_00900	COG0840	transmembrane signaling receptor activity
JYG33_00905	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JYG33_00915	COG0745	RESPONSE REGULATOR receiver
JYG33_00920	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
JYG33_00925	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JYG33_00930	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JYG33_00960	COG1558	bacterial-type flagellum-dependent cell motility
JYG33_00965	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
JYG33_00995	COG3951	Flagellar rod assembly protein muramidase FlgJ
JYG33_00995	COG1705	Flagellar rod assembly protein muramidase FlgJ
JYG33_01005	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JYG33_01020	COG0840	transmembrane signaling receptor activity
JYG33_01030	COG2176	DNA-directed DNA polymerase activity
JYG33_01040	COG1987	bacterial-type flagellum assembly
JYG33_01055	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JYG33_01080	COG1157	protein secretion by the type III secretion system
JYG33_01095	COG1766	The M ring may be actively involved in energy transduction
JYG33_01100	COG1677	Flagellar hook-basal body complex protein FliE
JYG33_01105	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JYG33_01130	COG1334	flagellar protein FlaG
JYG33_01135	COG1191	sigma factor activity
JYG33_01200	COG1262	PFAM Formylglycine-generating sulfatase enzyme
JYG33_01220	COG2733	membrane
JYG33_01225	COG0840	transmembrane signaling receptor activity
JYG33_01230	COG0840	transmembrane signaling receptor activity
JYG33_01245	COG3181	Tripartite tricarboxylate transporter family receptor
JYG33_01255	COG2610	gluconate transmembrane transporter activity
JYG33_01285	COG4521	taurine ABC transporter
JYG33_01290	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
JYG33_01295	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JYG33_01300	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_01305	COG0583	DNA-binding transcription factor activity
JYG33_01310	COG3706	GGDEF domain
JYG33_01315	COG2824	Alkylphosphonate utilization operon protein PhnA
JYG33_01335	COG4771	TonB-dependent receptor
JYG33_01350	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JYG33_01385	COG1113	amino acid transport
JYG33_01405	COG0583	DNA-binding transcription factor activity
JYG33_01410	COG3755	Protein conserved in bacteria
JYG33_01455	COG0446	pyridine nucleotide-disulphide oxidoreductase
JYG33_01480	COG1278	Cold shock
JYG33_01485	COG0642	Histidine kinase
JYG33_01495	COG3278	Belongs to the heme-copper respiratory oxidase family
JYG33_01510	COG3258	Cytochrome c
JYG33_01515	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JYG33_01520	COG4774	siderophore transport
JYG33_01570	COG1289	transmembrane transporter activity
JYG33_01575	COG2252	PERMEase
JYG33_01595	COG1999	signal sequence binding
JYG33_01605	COG0069	glutamate synthase activity
JYG33_01615	COG1846	Transcriptional regulator
JYG33_01620	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JYG33_01660	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_01670	COG3264	Mechanosensitive ion channel
JYG33_01670	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
JYG33_01675	COG3264	Mechanosensitive ion channel
JYG33_01675	COG1196	nuclear chromosome segregation
JYG33_01680	COG0477	Major facilitator Superfamily
JYG33_01695	COG1396	sequence-specific DNA binding
JYG33_01700	COG3437	response regulator, receiver
JYG33_01705	COG2205	protein histidine kinase activity
JYG33_01705	COG0784	Response regulator, receiver
JYG33_01705	COG2198	Histidine kinase
JYG33_01710	COG2239	Acts as a magnesium transporter
JYG33_01720	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
JYG33_01725	COG1490	D-aminoacyl-tRNA deacylase activity
JYG33_01740	COG0456	acetyltransferase
JYG33_01750	COG0501	Belongs to the peptidase M48B family
JYG33_01890	COG3772	lysozyme
JYG33_01945	COG2199	diguanylate cyclase activity
JYG33_01960	COG1522	sequence-specific DNA binding
JYG33_01965	COG0626	cystathionine gamma-synthase activity
JYG33_01975	COG0494	nUDIX hydrolase
JYG33_01980	COG2832	Protein of unknown function (DUF454)
JYG33_01990	COG0137	argininosuccinate synthase activity
JYG33_01995	COG0519	Catalyzes the synthesis of GMP from XMP
JYG33_01995	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JYG33_02005	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
JYG33_02015	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
JYG33_02020	COG2205	protein histidine kinase activity
JYG33_02025	COG0745	RESPONSE REGULATOR receiver
JYG33_02030	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
JYG33_02040	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JYG33_02045	COG0268	Binds directly to 16S ribosomal RNA
JYG33_02050	COG0728	peptidoglycan biosynthetic process
JYG33_02060	COG0563	adenylate kinase activity
JYG33_02065	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
JYG33_02070	COG2835	tetraacyldisaccharide 4'-kinase activity
JYG33_02085	COG0811	peptide transport
JYG33_02090	COG1570	exodeoxyribonuclease VII activity
JYG33_02095	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JYG33_02110	COG0671	phosphoesterase, PA-phosphatase related
JYG33_02130	COG0183	Belongs to the thiolase family
JYG33_02140	COG1278	Cold shock
JYG33_02145	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
JYG33_02150	COG0542	response to heat
JYG33_02155	COG2995	paraquat-inducible protein a
JYG33_02160	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JYG33_02160	COG3008	intermembrane lipid transfer
JYG33_02205	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_02215	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
JYG33_02220	COG0756	dUTP diphosphatase activity
JYG33_02230	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
JYG33_02235	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
JYG33_02240	COG0196	riboflavin kinase activity
JYG33_02245	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JYG33_02250	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JYG33_02250	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JYG33_02260	COG0210	DNA helicase
JYG33_02295	COG0488	(ABC) transporter
JYG33_02300	COG2890	protein-(glutamine-N5) methyltransferase activity
JYG33_02305	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JYG33_02310	COG2171	N-acyltransferase activity
JYG33_02320	COG2207	Transcriptional regulator
JYG33_02330	COG0471	metal ion transport
JYG33_02330	COG3273	potassium ion transport
JYG33_02380	COG1278	Cold shock
JYG33_02390	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JYG33_02395	COG0544	peptidyl-prolyl cis-trans isomerase activity
JYG33_02400	COG0740	serine-type endopeptidase activity
JYG33_02410	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JYG33_02430	COG0556	nucleotide-excision repair
JYG33_02435	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JYG33_02445	COG1104	cysteine desulfurase activity
JYG33_02455	COG0316	Belongs to the HesB IscA family
JYG33_02465	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
JYG33_02470	COG4221	oxidoreductase activity
JYG33_02480	COG0840	transmembrane signaling receptor activity
JYG33_02485	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
JYG33_02490	COG0697	spore germination
JYG33_02500	COG0385	Bile acid
JYG33_02510	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JYG33_02525	COG1136	(ABC) transporter
JYG33_02530	COG0084	hydrolase, TatD family'
JYG33_02545	COG0613	PHP domain protein
JYG33_02555	COG0047	phosphoribosylformylglycinamidine synthase activity
JYG33_02555	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JYG33_02580	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JYG33_02580	COG0519	Catalyzes the synthesis of GMP from XMP
JYG33_02590	COG3971	2-oxopent-4-enoate hydratase activity
JYG33_02595	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JYG33_02610	COG0583	DNA-binding transcription factor activity
JYG33_02625	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JYG33_02645	COG1960	acyl-CoA dehydrogenase activity
JYG33_02655	COG2378	regulation of single-species biofilm formation
JYG33_02660	COG0523	cobalamin synthesis protein
JYG33_02735	COG4774	siderophore transport
JYG33_02785	COG1276	copper resistance
JYG33_02785	COG2372	response to copper ion
JYG33_02800	COG0625	glutathione transferase activity
JYG33_02805	COG0740	serine-type endopeptidase activity
JYG33_02855	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JYG33_02890	COG0640	Transcriptional regulator
JYG33_02915	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JYG33_02940	COG3485	protocatechuate 3,4-dioxygenase
JYG33_02950	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
JYG33_02955	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JYG33_02965	COG3135	benzoate transporter
JYG33_02970	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
JYG33_02975	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JYG33_02985	COG4555	ABC transporter
JYG33_02995	COG2197	response regulator
JYG33_03000	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JYG33_03025	COG1846	Transcriptional regulator
JYG33_03030	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JYG33_03035	COG2271	Major facilitator Superfamily
JYG33_03045	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JYG33_03055	COG0697	spore germination
JYG33_03075	COG3842	ATPase activity
JYG33_03100	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JYG33_03105	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
JYG33_03110	COG0667	Aldo Keto reductase
JYG33_03130	COG0582	viral genome integration into host DNA
JYG33_03190	COG1278	Cold shock
JYG33_03285	COG3728	DNA packaging
JYG33_03285	COG5484	DNA packaging
JYG33_03290	COG5410	chromosome segregation
JYG33_03425	COG2135	peptidase activity
JYG33_03455	COG3422	double-strand break repair
JYG33_03480	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYG33_03485	COG0765	amino acid transport
JYG33_03490	COG0765	amino acid transport
JYG33_03495	COG1126	abc transporter atp-binding protein
JYG33_03545	COG2871	sodium ion transport
JYG33_03575	COG2814	Major facilitator Superfamily
JYG33_03580	COG1280	lysine exporter protein (LysE YggA)
JYG33_03605	COG0402	S-adenosylhomocysteine deaminase activity
JYG33_03630	COG0330	HflC and HflK could
JYG33_03635	COG1585	Membrane protein implicated in regulation of membrane protease activity
JYG33_03640	COG2226	methyltransferase
JYG33_03650	COG3042	response to heat
JYG33_03660	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JYG33_03675	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JYG33_03680	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
JYG33_03695	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JYG33_03700	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JYG33_03725	COG0606	chelatase, subunit chli
JYG33_03740	COG0291	Belongs to the bacterial ribosomal protein bL35 family
JYG33_03745	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
JYG33_03750	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
JYG33_03755	COG0072	phenylalanine-tRNA ligase activity
JYG33_03755	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JYG33_03770	COG2833	Protein of unknown function (DUF455)
JYG33_03780	COG5265	(ABC) transporter
JYG33_03785	COG1959	2 iron, 2 sulfur cluster binding
JYG33_03790	COG0719	Fe-S assembly protein
JYG33_03795	COG0396	ATPase activity
JYG33_03800	COG0719	Fe-S assembly protein
JYG33_03810	COG0822	iron-sulfur transferase activity
JYG33_03815	COG2151	metal-sulfur cluster biosynthetic enzyme
JYG33_03845	COG0747	negative chemotaxis
JYG33_03850	COG0601	transmembrane transport
JYG33_03855	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JYG33_03920	COG3048	D-serine ammonia-lyase activity
JYG33_03925	COG3258	Cytochrome c
JYG33_03945	COG3949	Membrane
JYG33_03960	COG1262	PFAM Formylglycine-generating sulfatase enzyme
JYG33_03975	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JYG33_03980	COG0569	domain protein
JYG33_03985	COG1902	pentaerythritol trinitrate reductase activity
JYG33_03995	COG1610	YqeY-like protein
JYG33_04000	COG0587	DNA-directed DNA polymerase activity
JYG33_04040	COG0583	DNA-binding transcription factor activity
JYG33_04045	COG1686	Belongs to the peptidase S11 family
JYG33_04060	COG1360	Flagellar Motor Protein
JYG33_04070	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_04080	COG4221	oxidoreductase activity
JYG33_04090	COG0307	riboflavin synthase, alpha
JYG33_04135	COG2233	PERMEase
JYG33_04140	COG0071	Belongs to the small heat shock protein (HSP20) family
JYG33_04145	COG2226	methyltransferase
JYG33_04145	COG2867	negative regulation of translational initiation
JYG33_04150	COG1473	amidohydrolase
JYG33_04165	COG2814	Major facilitator Superfamily
JYG33_04190	COG1846	Transcriptional regulator
JYG33_04195	COG2816	NAD+ diphosphatase activity
JYG33_04200	COG1561	YicC-like family, N-terminal region
JYG33_04215	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
JYG33_04220	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
JYG33_04225	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JYG33_04230	COG0174	glutamine synthetase
JYG33_04235	COG2153	protein acetylation
JYG33_04250	COG3842	ATPase activity
JYG33_04255	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
JYG33_04260	COG1840	ABC-type Fe3 transport system, periplasmic component
JYG33_04275	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JYG33_04285	COG0783	Belongs to the Dps family
JYG33_04295	COG3842	ATPase activity
JYG33_04300	COG0395	ABC-type sugar transport system, permease component
JYG33_04305	COG1175	transmembrane transport
JYG33_04310	COG1653	transport
JYG33_04325	COG0559	Belongs to the binding-protein-dependent transport system permease family
JYG33_04355	COG0625	glutathione transferase activity
JYG33_04365	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JYG33_04370	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_04380	COG0114	fumarate hydratase activity
JYG33_04385	COG2133	pyrroloquinoline quinone binding
JYG33_04390	COG2226	methyltransferase
JYG33_04395	COG0589	response to stress
JYG33_04405	COG2807	transmembrane transport
JYG33_04415	COG0583	DNA-binding transcription factor activity
JYG33_04430	COG0583	DNA-binding transcription factor activity
JYG33_04435	COG1027	Aspartate ammonia-lyase
JYG33_04445	COG0477	Major facilitator Superfamily
JYG33_04465	COG0583	DNA-binding transcription factor activity
JYG33_04470	COG4974	Belongs to the 'phage' integrase family
JYG33_04480	COG2132	Multicopper oxidase
JYG33_04485	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
JYG33_04500	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_04505	COG1683	Conserved Protein
JYG33_04560	COG3038	cytochrome b561
JYG33_04570	COG2353	YceI-like domain
JYG33_04575	COG1393	Belongs to the ArsC family
JYG33_04580	COG0625	glutathione transferase activity
JYG33_04595	COG3181	Tripartite tricarboxylate transporter family receptor
JYG33_04605	COG0084	hydrolase, TatD family'
JYG33_04610	COG0470	DNA polymerase III
JYG33_04620	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JYG33_04640	COG1960	acyl-CoA dehydrogenase activity
JYG33_04645	COG2914	Belongs to the UPF0125 (RnfH) family
JYG33_04650	COG2867	negative regulation of translational initiation
JYG33_04655	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
JYG33_04660	COG1252	NADH dehydrogenase
JYG33_04695	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JYG33_04700	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JYG33_04705	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JYG33_04715	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JYG33_04720	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JYG33_04730	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JYG33_04740	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
JYG33_04745	COG0575	Belongs to the CDS family
JYG33_04750	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JYG33_04755	COG0233	cytoplasmic translational termination
JYG33_04760	COG0528	UMP kinase activity
JYG33_04765	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
JYG33_04770	COG0052	Belongs to the universal ribosomal protein uS2 family
JYG33_04775	COG0024	Methionine aminopeptidase
JYG33_04780	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
JYG33_04805	COG1286	toxin biosynthetic process
JYG33_04815	COG0285	dihydrofolate synthase activity
JYG33_04820	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JYG33_04825	COG0508	dehydrogenase complex catalyzes the overall conversion of
JYG33_04830	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
JYG33_04845	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
JYG33_04855	COG1999	signal sequence binding
JYG33_04860	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JYG33_04890	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JYG33_04895	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
JYG33_04900	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JYG33_04905	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
JYG33_04910	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_04915	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_04935	COG0183	Belongs to the thiolase family
JYG33_04955	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
JYG33_04965	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JYG33_04970	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JYG33_04975	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JYG33_04995	COG0183	Belongs to the thiolase family
JYG33_05000	COG0183	Belongs to the thiolase family
JYG33_05010	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
JYG33_05050	COG0194	GDP metabolic process
JYG33_05055	COG1758	RNA polymerase activity
JYG33_05060	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JYG33_05065	COG0583	DNA-binding transcription factor activity
JYG33_05070	COG0583	DNA-binding transcription factor activity
JYG33_05075	COG0179	Fumarylacetoacetate (FAA) hydrolase
JYG33_05095	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
JYG33_05100	COG0739	heme binding
JYG33_05105	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JYG33_05110	COG0584	glycerophosphoryl diester phosphodiesterase
JYG33_05115	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
JYG33_05120	COG1187	pseudouridine synthase activity
JYG33_05125	COG3161	chorismate lyase activity
JYG33_05130	COG2814	Major facilitator Superfamily
JYG33_05135	COG0656	L-ascorbic acid biosynthetic process
JYG33_05145	COG0668	transmembrane transport
JYG33_05150	COG0165	Argininosuccinate lyase
JYG33_05165	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JYG33_05175	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JYG33_05185	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JYG33_05190	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
JYG33_05195	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
JYG33_05200	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
JYG33_05205	COG2252	PERMEase
JYG33_05210	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JYG33_05230	COG0488	(ABC) transporter
JYG33_05235	COG1619	proteins homologs of microcin C7 resistance protein MccF
JYG33_05245	COG1131	(ABC) transporter
JYG33_05250	COG0842	Transport permease protein
JYG33_05260	COG1666	GTP binding
JYG33_05265	COG0318	PFAM AMP-dependent synthetase and ligase
JYG33_05270	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JYG33_05275	COG0519	Catalyzes the synthesis of GMP from XMP
JYG33_05275	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JYG33_05280	COG2207	Transcriptional regulator
JYG33_05295	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JYG33_05300	COG0135	phosphoribosylanthranilate isomerase activity
JYG33_05305	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JYG33_05315	COG0101	tRNA pseudouridine synthase activity
JYG33_05325	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JYG33_05330	COG0473	3-isopropylmalate dehydrogenase activity
JYG33_05350	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JYG33_05360	COG4566	intracellular signal transduction
JYG33_05375	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
JYG33_05380	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
JYG33_05390	COG1295	ribonuclease BN
JYG33_05400	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JYG33_05425	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JYG33_05465	COG4964	Belongs to the GSP D family
JYG33_05505	COG3712	iron ion homeostasis
JYG33_05510	COG1595	DNA-templated transcription, initiation
JYG33_05520	COG4774	siderophore transport
JYG33_05525	COG3712	iron ion homeostasis
JYG33_05550	COG2959	enzyme of heme biosynthesis
JYG33_05560	COG0181	hydroxymethylbilane synthase activity
JYG33_05565	COG0861	Integral membrane protein TerC family
JYG33_05570	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JYG33_05575	COG0045	succinate-CoA ligase (ADP-forming) activity
JYG33_05590	COG0583	DNA-binding transcription factor activity
JYG33_05595	COG2137	regulation of response to DNA damage stimulus
JYG33_05600	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
JYG33_05615	COG0477	Major facilitator Superfamily
JYG33_05630	COG0318	PFAM AMP-dependent synthetase and ligase
JYG33_05635	COG1024	Enoyl-CoA hydratase
JYG33_05640	COG3162	membrane
JYG33_05645	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JYG33_05655	COG0540	Belongs to the ATCase OTCase family
JYG33_05670	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JYG33_05685	COG2070	2-Nitropropane dioxygenase
JYG33_05690	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JYG33_05695	COG2111	Na H antiporter
JYG33_05695	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JYG33_05700	COG1006	Multisubunit Na H antiporter MnhC subunit
JYG33_05705	COG0651	ATP synthesis coupled electron transport
JYG33_05715	COG2212	antiporter activity
JYG33_05730	COG0477	Major facilitator Superfamily
JYG33_05755	COG3158	transport of potassium into the cell
JYG33_05760	COG0642	Histidine kinase
JYG33_05785	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
JYG33_05790	COG4208	sulfate ABC transporter
JYG33_05795	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
JYG33_05800	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
JYG33_05810	COG1234	tRNA 3'-trailer cleavage
JYG33_05815	COG0583	DNA-binding transcription factor activity
JYG33_05835	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JYG33_05835	COG1648	precorrin-2 dehydrogenase activity
JYG33_05840	COG2010	Cytochrome c
JYG33_05845	COG3391	amine dehydrogenase activity
JYG33_05850	COG1522	sequence-specific DNA binding
JYG33_05865	COG0535	radical SAM domain protein
JYG33_05870	COG1648	precorrin-2 dehydrogenase activity
JYG33_05870	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JYG33_05880	COG2010	Cytochrome c
JYG33_05885	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JYG33_05895	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JYG33_05900	COG0557	exoribonuclease II activity
JYG33_05940	COG2375	cellular response to nickel ion
JYG33_05975	COG0583	DNA-binding transcription factor activity
JYG33_05980	COG3842	ATPase activity
JYG33_05990	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JYG33_05995	COG1840	ABC-type Fe3 transport system, periplasmic component
JYG33_06020	COG0412	Dienelactone hydrolase
JYG33_06025	COG3530	Putative quorum-sensing-regulated virulence factor
JYG33_06030	COG0625	glutathione transferase activity
JYG33_06040	COG1741	Belongs to the pirin family
JYG33_06050	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JYG33_06055	COG2814	Major facilitator Superfamily
JYG33_06060	COG2807	transmembrane transport
JYG33_06065	COG2207	Transcriptional regulator
JYG33_06070	COG3135	benzoate transporter
JYG33_06095	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JYG33_06105	COG0402	S-adenosylhomocysteine deaminase activity
JYG33_06115	COG0745	RESPONSE REGULATOR receiver
JYG33_06120	COG2205	protein histidine kinase activity
JYG33_06125	COG2423	ornithine cyclodeaminase activity
JYG33_06135	COG2031	fatty acid transporter
JYG33_06140	COG0583	DNA-binding transcription factor activity
JYG33_06155	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JYG33_06160	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
JYG33_06165	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
JYG33_06170	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
JYG33_06175	COG0330	HflC and HflK could
JYG33_06180	COG0330	HflC and HflK could
JYG33_06185	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JYG33_06190	COG1923	regulation of RNA biosynthetic process
JYG33_06195	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JYG33_06200	COG1160	GTP binding
JYG33_06205	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JYG33_06210	COG2976	Protein conserved in bacteria
JYG33_06230	COG0820	rRNA (adenine-C2-)-methyltransferase activity
JYG33_06235	COG0105	UTP biosynthetic process
JYG33_06250	COG0583	DNA-binding transcription factor activity
JYG33_06255	COG0697	spore germination
JYG33_06260	COG0336	Belongs to the RNA methyltransferase TrmD family
JYG33_06270	COG0228	four-way junction DNA binding
JYG33_06275	COG0425	Belongs to the sulfur carrier protein TusA family
JYG33_06280	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JYG33_06295	COG2351	hydroxyisourate hydrolase activity
JYG33_06330	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JYG33_06355	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
JYG33_06360	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JYG33_06375	COG4638	Rieske (2fe-2S)
JYG33_06385	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JYG33_06390	COG0601	transmembrane transport
JYG33_06420	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
JYG33_06425	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
JYG33_06430	COG0542	response to heat
JYG33_06435	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JYG33_06470	COG3278	Belongs to the heme-copper respiratory oxidase family
JYG33_06480	COG2217	Heavy metal translocating P-type atpase
JYG33_06485	COG2224	Isocitrate lyase
JYG33_06490	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
JYG33_06490	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
JYG33_06510	COG1472	Belongs to the glycosyl hydrolase 3 family
JYG33_06515	COG0736	holo-[acyl-carrier-protein] synthase activity
JYG33_06525	COG2050	protein possibly involved in aromatic compounds catabolism
JYG33_06530	COG1024	Enoyl-CoA hydratase
JYG33_06535	COG1012	belongs to the aldehyde dehydrogenase family
JYG33_06540	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JYG33_06545	COG2151	metal-sulfur cluster biosynthetic enzyme
JYG33_06550	COG3396	Phenylacetate-CoA oxygenase
JYG33_06555	COG3460	Phenylacetate-CoA oxygenase
JYG33_06560	COG3396	Phenylacetate-CoA oxygenase
JYG33_06565	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
JYG33_06570	COG0501	Belongs to the peptidase M48B family
JYG33_06575	COG1162	GTPase activity
JYG33_06585	COG0335	large ribosomal subunit rRNA binding
JYG33_06605	COG0450	alkyl hydroperoxide reductase
JYG33_06610	COG1960	acyl-CoA dehydrogenase activity
JYG33_06625	COG0123	including yeast histone deacetylase and acetoin utilization protein
JYG33_06630	COG2951	lytic endotransglycosylase activity
JYG33_06645	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JYG33_06650	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
JYG33_06655	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
JYG33_06675	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
JYG33_06680	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
JYG33_06685	COG0287	Prephenate dehydrogenase
JYG33_06695	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
JYG33_06710	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JYG33_06720	COG0583	DNA-binding transcription factor activity
JYG33_06750	COG1408	metallophosphoesterase
JYG33_06755	COG4335	DNA alkylation repair
JYG33_06765	COG0436	Aminotransferase
JYG33_06775	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JYG33_06785	COG1309	transcriptional regulator
JYG33_06795	COG0488	(ABC) transporter
JYG33_06840	COG0625	glutathione transferase activity
JYG33_06850	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
JYG33_06855	COG1280	lysine exporter protein (LysE YggA)
JYG33_06875	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JYG33_06885	COG2198	Histidine kinase
JYG33_06885	COG2205	protein histidine kinase activity
JYG33_06885	COG0784	Response regulator, receiver
JYG33_06895	COG2046	Belongs to the sulfate adenylyltransferase family
JYG33_06910	COG0583	DNA-binding transcription factor activity
JYG33_06915	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
JYG33_06930	COG0840	transmembrane signaling receptor activity
JYG33_06935	COG2119	membrane
JYG33_06950	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
JYG33_06955	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JYG33_06970	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
JYG33_06975	COG2321	neutral zinc metallopeptidase
JYG33_06995	COG2175	clavaminate synthase activity
JYG33_07000	COG1846	Transcriptional regulator
JYG33_07005	COG0347	Belongs to the P(II) protein family
JYG33_07010	COG0004	ammonium transporteR
JYG33_07015	COG3909	cytochrome
JYG33_07025	COG0625	glutathione transferase activity
JYG33_07040	COG0730	response to heat
JYG33_07045	COG0482	sulfurtransferase activity
JYG33_07050	COG0277	FAD linked oxidase domain protein
JYG33_07055	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JYG33_07060	COG2879	small protein
JYG33_07065	COG1966	Carbon starvation protein
JYG33_07070	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYG33_07075	COG0765	amino acid transport
JYG33_07080	COG0765	amino acid transport
JYG33_07085	COG1126	abc transporter atp-binding protein
JYG33_07095	COG5285	phytanoyl-CoA dioxygenase
JYG33_07100	COG0662	Cupin 2, conserved barrel domain protein
JYG33_07115	COG1846	Transcriptional regulator
JYG33_07125	COG0312	modulator of DNA gyrase
JYG33_07140	COG0308	aminopeptidase N
JYG33_07145	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
JYG33_07160	COG0473	3-isopropylmalate dehydrogenase activity
JYG33_07165	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JYG33_07170	COG0433	COG0433 Predicted ATPase
JYG33_07175	COG0217	transcriptional regulatory protein
JYG33_07180	COG0151	Belongs to the GarS family
JYG33_07190	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
JYG33_07195	COG0799	negative regulation of ribosome biogenesis
JYG33_07200	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
JYG33_07205	COG0424	maF-like protein
JYG33_07230	COG5339	Protein conserved in bacteria
JYG33_07235	COG2084	Dehydrogenase
JYG33_07240	COG0625	glutathione transferase activity
JYG33_07245	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
JYG33_07250	COG1047	Peptidyl-prolyl cis-trans
JYG33_07255	COG2003	Belongs to the UPF0758 family
JYG33_07260	COG1737	Transcriptional regulator
JYG33_07265	COG0477	Major facilitator Superfamily
JYG33_07275	COG2271	Major facilitator Superfamily
JYG33_07290	COG0534	Mate efflux family protein
JYG33_07295	COG4175	Glycine betaine
JYG33_07300	COG4176	ABC-type proline glycine betaine transport system permease component
JYG33_07315	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JYG33_07320	COG2814	Major facilitator Superfamily
JYG33_07325	COG0227	Belongs to the bacterial ribosomal protein bL28 family
JYG33_07330	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JYG33_07335	COG2318	DinB family
JYG33_07350	COG0495	leucyl-tRNA aminoacylation
JYG33_07360	COG1466	dna polymerase III delta subunit
JYG33_07365	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
JYG33_07370	COG1981	membrane
JYG33_07385	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
JYG33_07395	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
JYG33_07400	COG0148	phosphopyruvate hydratase activity
JYG33_07410	COG2814	Major facilitator Superfamily
JYG33_07425	COG2877	3-deoxy-8-phosphooctulonate synthase activity
JYG33_07435	COG0504	CTP synthase activity
JYG33_07470	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JYG33_07480	COG0791	NLP P60 protein
JYG33_07490	COG0583	DNA-binding transcription factor activity
JYG33_07500	COG0583	DNA-binding transcription factor activity
JYG33_07510	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JYG33_07525	COG1045	serine acetyltransferase
JYG33_07540	COG1381	Involved in DNA repair and RecF pathway recombination
JYG33_07545	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
JYG33_07550	COG0571	ribonuclease III activity
JYG33_07565	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JYG33_07590	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JYG33_07595	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JYG33_07600	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_07605	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JYG33_07610	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JYG33_07620	COG0333	Belongs to the bacterial ribosomal protein bL32 family
JYG33_07625	COG1399	metal-binding, possibly nucleic acid-binding protein
JYG33_07630	COG0424	maF-like protein
JYG33_07640	COG3023	N-Acetylmuramoyl-L-alanine amidase
JYG33_07645	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
JYG33_07650	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JYG33_07655	COG0546	phosphoglycolate phosphatase activity
JYG33_07660	COG0564	pseudouridine synthase activity
JYG33_07665	COG1530	ribonuclease E activity
JYG33_07670	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
JYG33_07675	COG0159	tryptophan synthase activity
JYG33_07680	COG0133	tryptophan synthase activity
JYG33_07685	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JYG33_07695	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
JYG33_07700	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
JYG33_07710	COG2878	Part of a membrane complex involved in electron transport
JYG33_07715	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JYG33_07720	COG1129	ABC transporter
JYG33_07725	COG3047	cAMP biosynthetic process
JYG33_07750	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JYG33_07755	COG2917	probably involved in intracellular septation
JYG33_07765	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JYG33_07770	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JYG33_07780	COG1196	nuclear chromosome segregation
JYG33_07790	COG1573	uracil-dna glycosylase
JYG33_07795	COG1214	PFAM Peptidase M22, glycoprotease
JYG33_07810	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
JYG33_07815	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
JYG33_07820	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JYG33_07825	COG0560	Phosphoserine phosphatase
JYG33_07840	COG1007	ATP synthesis coupled electron transport
JYG33_07855	COG0713	ATP synthesis coupled electron transport
JYG33_07865	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JYG33_07870	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
JYG33_07890	COG0649	NAD binding
JYG33_07895	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JYG33_07900	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JYG33_07905	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JYG33_07910	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JYG33_07925	COG0149	triose-phosphate isomerase activity
JYG33_07930	COG0604	alcohol dehydrogenase
JYG33_07945	COG1185	polyribonucleotide nucleotidyltransferase activity
JYG33_07950	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
JYG33_07955	COG1183	phosphatidylcholine synthase activity
JYG33_07960	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
JYG33_07965	COG0440	acetolactate synthase activity
JYG33_07970	COG0028	Belongs to the TPP enzyme family
JYG33_07975	COG1289	transmembrane transporter activity
JYG33_07980	COG3022	response to hydroperoxide
JYG33_07985	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_08005	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
JYG33_08010	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JYG33_08015	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
JYG33_08020	COG1674	ftsk spoiiie
JYG33_08025	COG0492	ferredoxin-NADP+ reductase activity
JYG33_08045	COG0477	Major facilitator Superfamily
JYG33_08065	COG2272	Belongs to the type-B carboxylesterase lipase family
JYG33_08070	COG1960	acyl-CoA dehydrogenase activity
JYG33_08095	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JYG33_08115	COG2204	response regulator
JYG33_08155	COG4964	Belongs to the GSP D family
JYG33_08215	COG0612	Peptidase, M16
JYG33_08220	COG0484	heat shock protein binding
JYG33_08225	COG0443	Heat shock 70 kDa protein
JYG33_08230	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
JYG33_08235	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
JYG33_08240	COG1420	regulation of RNA biosynthetic process
JYG33_08250	COG0497	DNA recombination
JYG33_08255	COG0735	belongs to the Fur family
JYG33_08260	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JYG33_08265	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
JYG33_08290	COG0477	Major facilitator Superfamily
JYG33_08295	COG1301	dicarboxylic acid transport
JYG33_08305	COG0812	UDP-N-acetylmuramate dehydrogenase activity
JYG33_08365	COG2814	Major facilitator Superfamily
JYG33_08385	COG2814	Major facilitator Superfamily
JYG33_08395	COG2819	hydrolase of the alpha beta superfamily
JYG33_08420	COG1454	alcohol dehydrogenase
JYG33_08455	COG1414	Transcriptional regulator
JYG33_08460	COG0477	Major facilitator Superfamily
JYG33_08465	COG0789	Transcriptional regulator
JYG33_08470	COG0513	Belongs to the DEAD box helicase family
JYG33_08485	COG0583	DNA-binding transcription factor activity
JYG33_08490	COG4638	Rieske (2fe-2S)
JYG33_08495	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
JYG33_08510	COG0446	pyridine nucleotide-disulphide oxidoreductase
JYG33_08530	COG4569	acetaldehyde dehydrogenase (acetylating) activity
JYG33_08535	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JYG33_08540	COG2814	Major facilitator Superfamily
JYG33_08555	COG3121	Chaperone
JYG33_08565	COG2205	protein histidine kinase activity
JYG33_08565	COG0784	Response regulator, receiver
JYG33_08570	COG2205	protein histidine kinase activity
JYG33_08570	COG0784	Response regulator, receiver
JYG33_08575	COG2197	response regulator
JYG33_08580	COG2199	diguanylate cyclase activity
JYG33_08580	COG2200	EAL domain
JYG33_08580	COG2203	Gaf domain
JYG33_08600	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JYG33_08605	COG2814	Major facilitator Superfamily
JYG33_08635	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_08645	COG0842	Transport permease protein
JYG33_08650	COG0842	Transport permease protein
JYG33_08650	COG1129	ABC transporter
JYG33_08655	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JYG33_08660	COG1538	Outer membrane efflux protein
JYG33_08665	COG3243	poly(R)-hydroxyalkanoic acid synthase
JYG33_08675	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
JYG33_08680	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
JYG33_08695	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JYG33_08700	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
JYG33_08710	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JYG33_08725	COG0505	Belongs to the CarA family
JYG33_08730	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
JYG33_08740	COG0789	Transcriptional regulator
JYG33_08750	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JYG33_08795	COG3278	Belongs to the heme-copper respiratory oxidase family
JYG33_08800	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JYG33_08820	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
JYG33_08850	COG2885	chlorophyll binding
JYG33_08850	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
JYG33_08865	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JYG33_08930	COG0516	GMP reductase activity
JYG33_08930	COG0517	IMP dehydrogenase activity
JYG33_08945	COG1027	Aspartate ammonia-lyase
JYG33_08950	COG1846	Transcriptional regulator
JYG33_08965	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
JYG33_08970	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
JYG33_08985	COG1414	Transcriptional regulator
JYG33_09005	COG0513	Belongs to the DEAD box helicase family
JYG33_09025	COG0429	hydrolase of the alpha beta-hydrolase fold
JYG33_09050	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JYG33_09060	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
JYG33_09070	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
JYG33_09075	COG0632	four-way junction helicase activity
JYG33_09085	COG2255	four-way junction helicase activity
JYG33_09095	COG0418	dihydroorotase activity
JYG33_09105	COG0415	Belongs to the DNA photolyase family
JYG33_09165	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JYG33_09170	COG4654	Cytochrome c, class I
JYG33_09210	COG1177	transmembrane transport
JYG33_09215	COG3842	ATPase activity
JYG33_09220	COG1840	ABC-type Fe3 transport system, periplasmic component
JYG33_09225	COG2084	Dehydrogenase
JYG33_09240	COG0494	nUDIX hydrolase
JYG33_09245	COG0442	prolyl-tRNA aminoacylation
JYG33_09250	COG0824	Thioesterase
JYG33_09255	COG0811	peptide transport
JYG33_09270	COG0823	Involved in the tonB-independent uptake of proteins
JYG33_09285	COG0596	Alpha beta hydrolase
JYG33_09310	COG1079	Belongs to the binding-protein-dependent transport system permease family
JYG33_09315	COG4603	Belongs to the binding-protein-dependent transport system permease family
JYG33_09320	COG3845	ABC transporter
JYG33_09340	COG0427	acetyl-CoA hydrolase
JYG33_09345	COG0583	DNA-binding transcription factor activity
JYG33_09350	COG3634	alkyl hydroperoxide reductase activity
JYG33_09360	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JYG33_09365	COG0697	spore germination
JYG33_09370	COG0175	sulfate reduction
JYG33_09385	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JYG33_09400	COG0583	DNA-binding transcription factor activity
JYG33_09405	COG1741	Belongs to the pirin family
JYG33_09410	COG3706	GGDEF domain
JYG33_09415	COG0154	amidase activity
JYG33_09440	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
JYG33_09450	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JYG33_09455	COG0284	orotidine-5'-phosphate decarboxylase activity
JYG33_09475	COG1414	Transcriptional regulator
JYG33_09485	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JYG33_09495	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JYG33_09500	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
JYG33_09525	COG0742	ribosomal rna small subunit methyltransferase
JYG33_09530	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
JYG33_09535	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JYG33_09565	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
JYG33_09590	COG1335	isochorismatase
JYG33_09595	COG2309	aminopeptidase activity
JYG33_09600	COG0596	Alpha beta hydrolase
JYG33_09605	COG2010	Cytochrome c
JYG33_09605	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JYG33_09610	COG2080	2 iron, 2 sulfur cluster binding
JYG33_09615	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JYG33_09615	COG2010	Cytochrome c
JYG33_09630	COG0411	ABC transporter
JYG33_09650	COG3706	GGDEF domain
JYG33_09660	COG3119	arylsulfatase activity
JYG33_09665	COG3181	Tripartite tricarboxylate transporter family receptor
JYG33_09675	COG1234	tRNA 3'-trailer cleavage
JYG33_09680	COG2188	Transcriptional regulator
JYG33_09690	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JYG33_09700	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
JYG33_09700	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
JYG33_09705	COG3608	succinylglutamate desuccinylase aspartoacylase
JYG33_09705	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
JYG33_09710	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JYG33_09720	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JYG33_09750	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
JYG33_09760	COG0446	pyridine nucleotide-disulphide oxidoreductase
JYG33_09775	COG1335	isochorismatase
JYG33_09780	COG2309	aminopeptidase activity
JYG33_09785	COG0596	Alpha beta hydrolase
JYG33_09800	COG1120	ATPase activity
JYG33_09805	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JYG33_09815	COG4206	TonB-dependent receptor
JYG33_09820	COG2031	fatty acid transporter
JYG33_09830	COG0402	S-adenosylhomocysteine deaminase activity
JYG33_09835	COG3181	Tripartite tricarboxylate transporter family receptor
JYG33_09850	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JYG33_09855	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JYG33_09860	COG0328	RNA-DNA hybrid ribonuclease activity
JYG33_09865	COG2226	methyltransferase
JYG33_09870	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JYG33_09875	COG1388	LysM domain
JYG33_09875	COG0741	lytic transglycosylase activity
JYG33_09895	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JYG33_09920	COG2204	response regulator
JYG33_09925	COG4191	Histidine kinase
JYG33_09930	COG1301	dicarboxylic acid transport
JYG33_09940	COG1054	Belongs to the UPF0176 family
JYG33_09960	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JYG33_09985	COG0604	alcohol dehydrogenase
JYG33_09995	COG1024	Enoyl-CoA hydratase
JYG33_10020	COG1902	pentaerythritol trinitrate reductase activity
JYG33_10045	COG0583	DNA-binding transcription factor activity
JYG33_10050	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JYG33_10075	COG0583	DNA-binding transcription factor activity
JYG33_10090	COG1280	lysine exporter protein (LysE YggA)
JYG33_10115	COG3485	protocatechuate 3,4-dioxygenase
JYG33_10130	COG0583	DNA-binding transcription factor activity
JYG33_10145	COG1393	Belongs to the ArsC family
JYG33_10150	COG0431	NADPH-dependent FMN reductase
JYG33_10155	COG0745	RESPONSE REGULATOR receiver
JYG33_10160	COG0642	Histidine kinase
JYG33_10205	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JYG33_10205	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JYG33_10210	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
JYG33_10215	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JYG33_10220	COG1881	PFAM PEBP family protein
JYG33_10225	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
JYG33_10230	COG0739	heme binding
JYG33_10235	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
JYG33_10240	COG0316	Belongs to the HesB IscA family
JYG33_10250	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
JYG33_10255	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
JYG33_10260	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
JYG33_10265	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
JYG33_10270	COG0312	modulator of DNA gyrase
JYG33_10275	COG3028	Belongs to the UPF0307 family
JYG33_10300	COG2205	protein histidine kinase activity
JYG33_10300	COG4191	Histidine kinase
JYG33_10300	COG0745	RESPONSE REGULATOR receiver
JYG33_10305	COG4566	intracellular signal transduction
JYG33_10310	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JYG33_10315	COG0402	S-adenosylhomocysteine deaminase activity
JYG33_10320	COG2233	PERMEase
JYG33_10325	COG0596	Alpha beta hydrolase
JYG33_10325	COG2945	thiolester hydrolase activity
JYG33_10335	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_10345	COG0583	DNA-binding transcription factor activity
JYG33_10375	COG0762	integral membrane protein
JYG33_10385	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JYG33_10385	COG2169	Transcriptional regulator
JYG33_10390	COG3133	Outer membrane lipoprotein
JYG33_10395	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JYG33_10410	COG0439	Biotin carboxylase
JYG33_10415	COG0511	ligase activity, forming carbon-carbon bonds
JYG33_10420	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
JYG33_10430	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JYG33_10435	COG3150	esterase
JYG33_10450	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JYG33_10455	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JYG33_10465	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JYG33_10480	COG1678	Uncharacterized ACR, COG1678
JYG33_10495	COG0352	thiamine-phosphate diphosphorylase activity
JYG33_10500	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
JYG33_10525	COG3237	CsbD-like
JYG33_10530	COG0261	This protein binds to 23S rRNA in the presence of protein L20
JYG33_10535	COG0211	Belongs to the bacterial ribosomal protein bL27 family
JYG33_10540	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
JYG33_10545	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
JYG33_10570	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
JYG33_10585	COG1126	abc transporter atp-binding protein
JYG33_10590	COG0765	amino acid transport
JYG33_10595	COG4597	amino acid ABC transporter
JYG33_10600	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYG33_10605	COG2884	Cell division ATP-binding protein ftsE
JYG33_10610	COG2177	Part of the ABC transporter FtsEX involved in
JYG33_10620	COG0772	Belongs to the SEDS family
JYG33_10625	COG0768	penicillin binding
JYG33_10635	COG1792	Involved in formation and maintenance of cell shape
JYG33_10640	COG1077	Cell shape determining protein MreB Mrl
JYG33_10645	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JYG33_10650	COG0154	amidase activity
JYG33_10655	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JYG33_10660	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
JYG33_10665	COG0583	DNA-binding transcription factor activity
JYG33_10670	COG2259	Doxx family
JYG33_10675	COG3384	dioxygenase
JYG33_10700	COG3604	Transcriptional regulator
JYG33_10715	COG0786	glutamate:sodium symporter activity
JYG33_10720	COG0142	geranyltranstransferase activity
JYG33_10730	COG0494	nUDIX hydrolase
JYG33_10735	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
JYG33_10750	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JYG33_10755	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JYG33_10760	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
JYG33_10765	COG0237	dephospho-CoA kinase activity
JYG33_10780	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
JYG33_10785	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
JYG33_10795	COG0477	Major facilitator Superfamily
JYG33_10810	COG4206	TonB-dependent receptor
JYG33_10815	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JYG33_10830	COG1595	DNA-templated transcription, initiation
JYG33_10840	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JYG33_10860	COG0598	Magnesium transport protein CorA
JYG33_10880	COG2022	thiamine diphosphate biosynthetic process
JYG33_10885	COG0351	phosphomethylpyrimidine kinase
JYG33_10890	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JYG33_10895	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JYG33_10900	COG1538	Outer membrane efflux protein
JYG33_10905	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
JYG33_10915	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
JYG33_10930	COG2226	methyltransferase
JYG33_10935	COG0745	RESPONSE REGULATOR receiver
JYG33_10950	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
JYG33_10955	COG1984	allophanate hydrolase subunit 2
JYG33_10960	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JYG33_10965	COG1238	metal cluster binding
JYG33_10990	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JYG33_10995	COG4988	ABC transporter
JYG33_11005	COG1294	oxidase, subunit
JYG33_11010	COG1271	oxidase subunit
JYG33_11025	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
JYG33_11040	COG1137	ATPase activity
JYG33_11050	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JYG33_11055	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
JYG33_11060	COG1660	Displays ATPase and GTPase activities
JYG33_11070	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JYG33_11075	COG0792	nuclease activity
JYG33_11080	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
JYG33_11095	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JYG33_11115	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JYG33_11120	COG0793	Belongs to the peptidase S41A family
JYG33_11130	COG0588	phosphoglycerate mutase activity
JYG33_11135	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JYG33_11145	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
JYG33_11150	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
JYG33_11155	COG3181	Tripartite tricarboxylate transporter family receptor
JYG33_11160	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JYG33_11165	COG1040	competence protein
JYG33_11170	COG2226	methyltransferase
JYG33_11175	COG4771	TonB-dependent receptor
JYG33_11180	COG0745	RESPONSE REGULATOR receiver
JYG33_11185	COG2205	protein histidine kinase activity
JYG33_11195	COG2204	response regulator
JYG33_11195	COG2204	response regulator
JYG33_11215	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JYG33_11230	COG3473	Maleate cis-trans isomerase
JYG33_11250	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
JYG33_11265	COG2076	Multidrug Resistance protein
JYG33_11275	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
JYG33_11305	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
JYG33_11310	COG1215	transferase activity, transferring glycosyl groups
JYG33_11320	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JYG33_11325	COG3307	-O-antigen
JYG33_11335	COG1088	dTDP-glucose 4,6-dehydratase activity
JYG33_11340	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JYG33_11360	COG0355	proton-transporting ATP synthase activity, rotational mechanism
JYG33_11370	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
JYG33_11375	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
JYG33_11380	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JYG33_11395	COG0356	it plays a direct role in the translocation of protons across the membrane
JYG33_11405	COG1024	Enoyl-CoA hydratase
JYG33_11420	COG0037	tRNA processing
JYG33_11425	COG0163	prenyltransferase activity
JYG33_11430	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
JYG33_11435	COG2890	protein-(glutamine-N5) methyltransferase activity
JYG33_11495	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JYG33_11525	COG0811	peptide transport
JYG33_11540	COG4106	trans-aconitate 2-methyltransferase activity
JYG33_11545	COG2264	protein methyltransferase activity
JYG33_11570	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JYG33_11595	COG3180	Ammonia monooxygenase
JYG33_11615	COG5002	protein histidine kinase activity
JYG33_11630	COG0477	Major facilitator Superfamily
JYG33_11635	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JYG33_11685	COG0437	4 iron, 4 sulfur cluster binding
JYG33_11690	COG2864	formate dehydrogenase
JYG33_11700	COG1921	L-seryl-tRNASec selenium transferase activity
JYG33_11705	COG3276	selenocysteine insertion sequence binding
JYG33_11715	COG1476	TRANSCRIPTIONal
JYG33_11720	COG0235	Class ii aldolase
JYG33_11730	COG3181	Tripartite tricarboxylate transporter family receptor
JYG33_11740	COG4771	TonB-dependent receptor
JYG33_11750	COG0709	Synthesizes selenophosphate from selenide and ATP
JYG33_11755	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
JYG33_11760	COG3901	Regulator of nitric oxide reductase transcription
JYG33_11760	COG0348	domain, Protein
JYG33_11765	COG4263	nitrous-oxide reductase activity
JYG33_11780	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
JYG33_11795	COG0166	Belongs to the GPI family
JYG33_11820	COG1215	transferase activity, transferring glycosyl groups
JYG33_11875	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
JYG33_11910	COG0156	8-amino-7-oxononanoate synthase activity
JYG33_11915	COG0604	alcohol dehydrogenase
JYG33_11915	COG3321	synthase
JYG33_11915	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_11920	COG2233	PERMEase
JYG33_11925	COG0697	spore germination
JYG33_11930	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JYG33_11935	COG0697	spore germination
JYG33_11950	COG0183	Belongs to the thiolase family
JYG33_11955	COG1250	3-hydroxyacyl-CoA dehydrogenase
JYG33_11955	COG1024	Enoyl-CoA hydratase
JYG33_11970	COG1127	ABC transporter
JYG33_11975	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
JYG33_11980	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JYG33_11995	COG1131	(ABC) transporter
JYG33_12000	COG0842	Transport permease protein
JYG33_12010	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JYG33_12020	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
JYG33_12025	COG0131	Imidazoleglycerol-phosphate dehydratase
JYG33_12035	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
JYG33_12040	COG0107	imidazoleglycerol-phosphate synthase activity
JYG33_12045	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
JYG33_12050	COG0140	phosphoribosyl-ATP diphosphatase activity
JYG33_12055	COG0537	adenosine 5'-monophosphoramidase activity
JYG33_12060	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JYG33_12065	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JYG33_12075	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JYG33_12085	COG1970	mechanosensitive ion channel activity
JYG33_12090	COG0723	plastoquinol--plastocyanin reductase activity
JYG33_12095	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JYG33_12100	COG2857	Cytochrome c1
JYG33_12105	COG0625	glutathione transferase activity
JYG33_12110	COG2969	positive regulation of protein catabolic process
JYG33_12115	COG4208	sulfate ABC transporter
JYG33_12120	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
JYG33_12125	COG4150	thiosulfate binding
JYG33_12145	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JYG33_12165	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
JYG33_12170	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JYG33_12175	COG3622	Belongs to the hyi family
JYG33_12185	COG0129	dihydroxy-acid dehydratase activity
JYG33_12190	COG1802	Transcriptional regulator
JYG33_12195	COG1522	sequence-specific DNA binding
JYG33_12200	COG3483	tryptophan 2,3-dioxygenase activity
JYG33_12220	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
JYG33_12225	COG0656	L-ascorbic acid biosynthetic process
JYG33_12235	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JYG33_12245	COG2226	methyltransferase
JYG33_12255	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JYG33_12270	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
JYG33_12275	COG0583	DNA-binding transcription factor activity
JYG33_12280	COG0477	Major facilitator Superfamily
JYG33_12285	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_12295	COG1335	isochorismatase
JYG33_12300	COG1335	isochorismatase
JYG33_12320	COG2823	Periplasmic or secreted lipoprotein
JYG33_12330	COG3284	Transcriptional regulator
JYG33_12335	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JYG33_12340	COG0583	DNA-binding transcription factor activity
JYG33_12400	COG1595	DNA-templated transcription, initiation
JYG33_12415	COG1522	sequence-specific DNA binding
JYG33_12425	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JYG33_12445	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JYG33_12480	COG0109	protoheme IX farnesyltransferase activity
JYG33_12500	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JYG33_12520	COG3568	Endonuclease Exonuclease Phosphatase
JYG33_12525	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
JYG33_12550	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JYG33_12560	COG1228	amidohydrolase
JYG33_12565	COG0402	S-adenosylhomocysteine deaminase activity
JYG33_12575	COG2986	histidine ammonia-lyase
JYG33_12580	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
JYG33_12605	COG0477	Major facilitator Superfamily
JYG33_12610	COG0583	DNA-binding transcription factor activity
JYG33_12630	COG2814	Major facilitator Superfamily
JYG33_12640	COG0789	Transcriptional regulator
JYG33_12660	COG0625	glutathione transferase activity
JYG33_12690	COG2365	Tyrosine phosphatase family
JYG33_12695	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
JYG33_12705	COG2814	Major facilitator Superfamily
JYG33_12720	COG2814	Major facilitator Superfamily
JYG33_12725	COG0251	oxidation-reduction process
JYG33_12730	COG3181	Tripartite tricarboxylate transporter family receptor
JYG33_12735	COG0179	Fumarylacetoacetate (FAA) hydrolase
JYG33_12740	COG1802	Transcriptional regulator
JYG33_12750	COG2814	Major facilitator Superfamily
JYG33_12760	COG0232	Belongs to the dGTPase family. Type 2 subfamily
JYG33_12765	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
JYG33_12770	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JYG33_12790	COG5001	Diguanylate cyclase
JYG33_12790	COG5002	protein histidine kinase activity
JYG33_12795	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JYG33_12800	COG1333	cytochrome c biogenesis protein
JYG33_12810	COG0218	Necessary for normal cell division and for the maintenance of normal septation
JYG33_12815	COG0113	porphobilinogen synthase activity
JYG33_12820	COG4232	protein-disulfide reductase activity
JYG33_12840	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JYG33_12845	COG0203	ribosomal protein L17
JYG33_12850	COG0202	RNA polymerase activity
JYG33_12855	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
JYG33_12860	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
JYG33_12865	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
JYG33_12870	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JYG33_12880	COG0201	protein transport
JYG33_12885	COG0200	Binds to the 23S rRNA
JYG33_12890	COG1841	ribosomal large subunit assembly
JYG33_12895	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
JYG33_12900	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
JYG33_12905	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
JYG33_12910	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
JYG33_12915	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JYG33_12920	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
JYG33_12925	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
JYG33_12930	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
JYG33_12970	COG1538	Outer membrane efflux protein
JYG33_12990	COG0183	Belongs to the thiolase family
JYG33_13000	COG2067	long-chain fatty acid transport protein
JYG33_13015	COG0318	PFAM AMP-dependent synthetase and ligase
JYG33_13020	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JYG33_13025	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JYG33_13030	COG1648	precorrin-2 dehydrogenase activity
JYG33_13030	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JYG33_13045	COG1116	anion transmembrane transporter activity
JYG33_13065	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
JYG33_13070	COG0255	Belongs to the universal ribosomal protein uL29 family
JYG33_13075	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
JYG33_13080	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
JYG33_13085	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
JYG33_13090	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
JYG33_13095	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
JYG33_13100	COG0089	rRNA binding
JYG33_13105	COG0088	Forms part of the polypeptide exit tunnel
JYG33_13110	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
JYG33_13115	COG4175	Glycine betaine
JYG33_13120	COG4176	ABC-type proline glycine betaine transport system permease component
JYG33_13125	COG0051	transcription antitermination factor activity, RNA binding
JYG33_13130	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JYG33_13135	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JYG33_13140	COG0049	tRNA binding
JYG33_13145	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
JYG33_13150	COG0745	RESPONSE REGULATOR receiver
JYG33_13175	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
JYG33_13180	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
JYG33_13185	COG0085	RNA polymerase activity
JYG33_13190	COG0222	ribosome binding
JYG33_13195	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
JYG33_13200	COG0081	regulation of translation
JYG33_13225	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JYG33_13245	COG1475	DNA binding
JYG33_13250	COG1192	Involved in chromosome partitioning
JYG33_13255	COG0357	Ribosomal RNA small subunit methyltransferase G
JYG33_13260	COG0445	tRNA wobble uridine modification
JYG33_13265	COG0436	Aminotransferase
JYG33_13270	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JYG33_13275	COG3706	GGDEF domain
JYG33_13280	COG0688	phosphatidylethanolamine metabolic process
JYG33_13290	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JYG33_13330	COG3645	SOS response
JYG33_13335	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
JYG33_13370	COG0559	Belongs to the binding-protein-dependent transport system permease family
JYG33_13390	COG0596	Alpha beta hydrolase
JYG33_13395	COG2309	aminopeptidase activity
JYG33_13400	COG1335	isochorismatase
JYG33_13435	COG0753	catalase activity
JYG33_13440	COG0745	RESPONSE REGULATOR receiver
JYG33_13445	COG2205	protein histidine kinase activity
JYG33_13470	COG4359	Dephosphorylates 2-hydroxy-3-keto-5-methylthiopentenyl- 1-phosphate (HK-MTPenyl-1-P) yielding 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)
JYG33_13500	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JYG33_13505	COG0706	membrane insertase activity
JYG33_13510	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
JYG33_13515	COG0594	ribonuclease P activity
JYG33_13520	COG0230	Belongs to the bacterial ribosomal protein bL34 family
JYG33_13525	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
JYG33_13530	COG0592	DNA-directed DNA polymerase activity
JYG33_13555	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JYG33_13580	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JYG33_13585	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JYG33_13605	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JYG33_13625	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JYG33_13645	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
JYG33_13650	COG0583	DNA-binding transcription factor activity
JYG33_13660	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
JYG33_13665	COG1802	Transcriptional regulator
JYG33_13670	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JYG33_13675	COG2271	Major facilitator Superfamily
JYG33_13695	COG0559	Belongs to the binding-protein-dependent transport system permease family
JYG33_13710	COG0318	PFAM AMP-dependent synthetase and ligase
JYG33_13720	COG0508	dehydrogenase complex catalyzes the overall conversion of
JYG33_13720	COG0596	Alpha beta hydrolase
JYG33_13725	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JYG33_13740	COG3181	Tripartite tricarboxylate transporter family receptor
JYG33_13750	COG0697	spore germination
JYG33_13755	COG0583	DNA-binding transcription factor activity
JYG33_13765	COG3842	ATPase activity
JYG33_13775	COG0436	Aminotransferase
JYG33_13785	COG0523	cobalamin synthesis protein
JYG33_13840	COG1846	Transcriptional regulator
JYG33_13860	COG0179	Fumarylacetoacetate (FAA) hydrolase
JYG33_13865	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JYG33_13870	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
JYG33_13880	COG4638	Rieske (2fe-2S)
JYG33_13985	COG3712	iron ion homeostasis
JYG33_13990	COG1595	DNA-templated transcription, initiation
JYG33_13995	COG4608	Belongs to the ABC transporter superfamily
JYG33_14000	COG0444	Belongs to the ABC transporter superfamily
JYG33_14005	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JYG33_14010	COG0601	transmembrane transport
JYG33_14020	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JYG33_14025	COG1595	DNA-templated transcription, initiation
JYG33_14030	COG3712	iron ion homeostasis
JYG33_14035	COG4774	siderophore transport
JYG33_14040	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JYG33_14045	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JYG33_14050	COG1464	Belongs to the NlpA lipoprotein family
JYG33_14055	COG1464	Belongs to the NlpA lipoprotein family
JYG33_14060	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JYG33_14065	COG2011	ABC-type metal ion transport system permease component
JYG33_14090	COG1464	Belongs to the NlpA lipoprotein family
JYG33_14105	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JYG33_14110	COG0431	NADPH-dependent FMN reductase
JYG33_14140	COG4149	molybdate abc transporter
JYG33_14155	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JYG33_14160	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JYG33_14170	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JYG33_14180	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
JYG33_14190	COG0028	Belongs to the TPP enzyme family
JYG33_14195	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JYG33_14225	COG2922	Belongs to the Smg family
JYG33_14240	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JYG33_14245	COG0183	Belongs to the thiolase family
JYG33_14250	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
JYG33_14255	COG1960	acyl-CoA dehydrogenase activity
JYG33_14280	COG2814	Major facilitator Superfamily
JYG33_14285	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JYG33_14295	COG0018	arginyl-trna synthetase
JYG33_14320	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JYG33_14335	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
JYG33_14340	COG4774	siderophore transport
JYG33_14345	COG0066	3-isopropylmalate dehydratase activity
JYG33_14350	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
JYG33_14355	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JYG33_14360	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JYG33_14365	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JYG33_14365	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
JYG33_14375	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JYG33_14380	COG1335	isochorismatase
JYG33_14385	COG0583	DNA-binding transcription factor activity
JYG33_14405	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
JYG33_14410	COG1280	lysine exporter protein (LysE YggA)
JYG33_14415	COG0513	Belongs to the DEAD box helicase family
JYG33_14425	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
JYG33_14440	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
JYG33_14455	COG0154	amidase activity
JYG33_14470	COG0583	DNA-binding transcription factor activity
JYG33_14500	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
JYG33_14505	COG1127	ABC transporter
JYG33_14510	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JYG33_14510	COG3218	ABC-type transport auxiliary lipoprotein component
JYG33_14525	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JYG33_14530	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JYG33_14540	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JYG33_14565	COG2186	Transcriptional regulator
JYG33_14570	COG0583	DNA-binding transcription factor activity
JYG33_14605	COG2358	TRAP transporter, solute receptor (TAXI family
JYG33_14615	COG0564	pseudouridine synthase activity
JYG33_14620	COG0252	asparaginase activity
JYG33_14645	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JYG33_14650	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JYG33_14655	COG3181	Tripartite tricarboxylate transporter family receptor
JYG33_14675	COG0559	Belongs to the binding-protein-dependent transport system permease family
JYG33_14700	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYG33_14715	COG0758	DNA mediated transformation
JYG33_14720	COG0242	peptide deformylase activity
JYG33_14725	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JYG33_14730	COG0697	spore germination
JYG33_14760	COG4336	lyase activity
JYG33_14765	COG0583	DNA-binding transcription factor activity
JYG33_14770	COG0859	PFAM glycosyl transferase family 9
JYG33_14780	COG1278	Cold shock
JYG33_14785	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JYG33_14795	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
JYG33_14800	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
JYG33_14800	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
JYG33_14810	COG1686	Belongs to the peptidase S11 family
JYG33_14820	COG2921	Belongs to the UPF0250 family
JYG33_14825	COG0321	lipoyl(octanoyl) transferase activity
JYG33_14845	COG1024	Enoyl-CoA hydratase
JYG33_14850	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
JYG33_14860	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
JYG33_14905	COG0826	peptidase U32
JYG33_14915	COG3154	lipid carrier protein
JYG33_14940	COG0134	indole-3-glycerol-phosphate synthase activity
JYG33_14945	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JYG33_14950	COG0512	Glutamine amidotransferase of anthranilate synthase
JYG33_14960	COG0546	phosphoglycolate phosphatase activity
JYG33_14970	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JYG33_14975	COG2967	ApaG domain
JYG33_14980	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
JYG33_14985	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JYG33_14990	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JYG33_15000	COG0840	transmembrane signaling receptor activity
JYG33_15010	COG1028	Short-chain dehydrogenase reductase Sdr
JYG33_15015	COG1535	isochorismatase
JYG33_15015	COG3433	isochorismatase activity
JYG33_15020	COG1169	isochorismate synthase
JYG33_15035	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JYG33_15035	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
JYG33_15040	COG3433	isochorismatase activity
JYG33_15040	COG1535	isochorismatase
JYG33_15045	COG1021	2,3-dihydroxybenzoate-AMP ligase
JYG33_15060	COG0411	ABC transporter
JYG33_15075	COG0683	leucine binding
JYG33_15090	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JYG33_15125	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
JYG33_15130	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JYG33_15135	COG2819	hydrolase of the alpha beta superfamily
JYG33_15140	COG0513	Belongs to the DEAD box helicase family
JYG33_15145	COG2814	Major facilitator Superfamily
JYG33_15165	COG1253	flavin adenine dinucleotide binding
JYG33_15205	COG1012	belongs to the aldehyde dehydrogenase family
JYG33_15210	COG0174	glutamine synthetase
JYG33_15215	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
JYG33_15230	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JYG33_15245	COG2311	Membrane
JYG33_15255	COG1132	(ABC) transporter
JYG33_15290	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JYG33_15310	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JYG33_15315	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
JYG33_15325	COG0583	DNA-binding transcription factor activity
JYG33_15330	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYG33_15335	COG1126	abc transporter atp-binding protein
JYG33_15340	COG0765	amino acid transport
JYG33_15345	COG0765	amino acid transport
JYG33_15350	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JYG33_15355	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JYG33_15370	COG3391	amine dehydrogenase activity
JYG33_15380	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
JYG33_15405	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
JYG33_15410	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JYG33_15415	COG0210	DNA helicase
JYG33_15430	COG0067	glutamate synthase
JYG33_15430	COG0069	glutamate synthase activity
JYG33_15430	COG0070	glutamate synthase
JYG33_15445	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JYG33_15450	COG1250	3-hydroxyacyl-CoA dehydrogenase
JYG33_15480	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JYG33_15480	COG2169	Transcriptional regulator
JYG33_15485	COG2918	glutathione biosynthetic process
JYG33_15495	COG2197	response regulator
JYG33_15500	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JYG33_15510	COG2223	nitrite transmembrane transporter activity
JYG33_15515	COG2860	membrane
JYG33_15520	COG1346	cytolysis
JYG33_15535	COG0251	oxidation-reduction process
JYG33_15560	COG0745	RESPONSE REGULATOR receiver
JYG33_15570	COG1280	lysine exporter protein (LysE YggA)
JYG33_15580	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JYG33_15595	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JYG33_15610	COG2096	Adenosyltransferase
JYG33_15625	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
JYG33_15630	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
JYG33_15640	COG0523	cobalamin synthesis protein
JYG33_15645	COG0735	belongs to the Fur family
JYG33_15660	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JYG33_15665	COG0803	Belongs to the bacterial solute-binding protein 9 family
JYG33_15670	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
JYG33_15680	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
JYG33_15685	COG1560	Kdo2-lipid A biosynthetic process
JYG33_15695	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
JYG33_15700	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
JYG33_15705	COG1950	PFAM Membrane protein of
JYG33_15740	COG0275	rRNA processing
JYG33_15745	COG0730	response to heat
JYG33_15750	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
JYG33_15755	COG0129	dihydroxy-acid dehydratase activity
JYG33_15765	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JYG33_15775	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
JYG33_15775	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JYG33_15780	COG0154	amidase activity
JYG33_15790	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
JYG33_15795	COG0628	permease
JYG33_15880	COG0656	L-ascorbic acid biosynthetic process
JYG33_15885	COG2814	Major facilitator Superfamily
JYG33_15890	COG0583	DNA-binding transcription factor activity
JYG33_15900	COG2365	Tyrosine phosphatase family
JYG33_15915	COG1846	Transcriptional regulator
JYG33_15940	COG0789	Transcriptional regulator
JYG33_15950	COG4774	siderophore transport
JYG33_15955	COG4607	ABC-type enterochelin transport system periplasmic component
JYG33_15960	COG4604	ABC transporter, ATP-binding protein
JYG33_15965	COG4605	iron ion homeostasis
JYG33_15970	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JYG33_15980	COG1132	(ABC) transporter
JYG33_15980	COG2375	cellular response to nickel ion
JYG33_15985	COG0277	FAD linked oxidase domain protein
JYG33_15990	COG1304	FMN binding
JYG33_15995	COG2186	Transcriptional regulator
JYG33_16015	COG1116	anion transmembrane transporter activity
JYG33_16015	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JYG33_16020	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JYG33_16030	COG2188	Transcriptional regulator
JYG33_16035	COG1522	sequence-specific DNA binding
JYG33_16040	COG3844	kynureninase activity
JYG33_16045	COG1113	amino acid transport
JYG33_16070	COG1349	DNA-binding transcription factor activity
JYG33_16090	COG0395	ABC-type sugar transport system, permease component
JYG33_16115	COG0861	Integral membrane protein TerC family
JYG33_16120	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JYG33_16130	COG1671	Belongs to the UPF0178 family
JYG33_16140	COG1418	mRNA catabolic process
JYG33_16150	COG4948	Mandelate Racemase Muconate Lactonizing
JYG33_16160	COG0477	Major facilitator Superfamily
JYG33_16175	COG0154	amidase activity
JYG33_16185	COG0583	DNA-binding transcription factor activity
JYG33_16210	COG0326	Molecular chaperone. Has ATPase activity
JYG33_16215	COG4774	siderophore transport
JYG33_16220	COG3128	pkhd-type hydroxylase
JYG33_16245	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JYG33_16250	COG1652	LysM domain
JYG33_16265	COG0220	tRNA (guanine-N7-)-methyltransferase activity
JYG33_16295	COG1335	isochorismatase
JYG33_16340	COG0583	DNA-binding transcription factor activity
JYG33_16345	COG0387	Pfam Sodium calcium exchanger
JYG33_16360	COG0477	Major facilitator Superfamily
JYG33_16365	COG0235	Class ii aldolase
JYG33_16375	COG3391	amine dehydrogenase activity
JYG33_16380	COG0590	tRNA wobble adenosine to inosine editing
JYG33_16385	COG3257	ureidoglycine aminohydrolase activity
JYG33_16390	COG0583	DNA-binding transcription factor activity
JYG33_16395	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JYG33_16400	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JYG33_16400	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JYG33_16410	COG0489	protein tyrosine kinase activity
JYG33_16435	COG2081	HI0933 family
JYG33_16440	COG0509	glycine decarboxylation via glycine cleavage system
JYG33_16450	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
JYG33_16455	COG1765	OsmC-like protein
JYG33_16460	COG3278	Belongs to the heme-copper respiratory oxidase family
JYG33_16485	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
JYG33_16495	COG0469	pyruvate kinase activity
JYG33_16500	COG3193	protein, possibly involved in utilization of glycolate and propanediol
JYG33_16510	COG2084	Dehydrogenase
JYG33_16515	COG3622	Belongs to the hyi family
JYG33_16520	COG3960	tartronate-semialdehyde synthase activity
JYG33_16525	COG0583	DNA-binding transcription factor activity
JYG33_16535	COG2233	PERMEase
JYG33_16540	COG1942	4-Oxalocrotonate Tautomerase
JYG33_16545	COG0235	Class ii aldolase
JYG33_16550	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
JYG33_16555	COG3195	allantoin biosynthetic process
JYG33_16555	COG3648	Uricase
JYG33_16565	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JYG33_16570	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
JYG33_16585	COG0438	transferase activity, transferring glycosyl groups
JYG33_16590	COG0438	transferase activity, transferring glycosyl groups
JYG33_16595	COG0438	transferase activity, transferring glycosyl groups
JYG33_16605	COG0277	FAD linked oxidase domain protein
JYG33_16615	COG0179	Fumarylacetoacetate (FAA) hydrolase
JYG33_16620	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
JYG33_16630	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JYG33_16640	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JYG33_16650	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
JYG33_16665	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JYG33_16670	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
JYG33_16675	COG0193	aminoacyl-tRNA hydrolase activity
JYG33_16685	COG0012	GTP binding
JYG33_16700	COG0488	(ABC) transporter
JYG33_16715	COG0288	reversible hydration of carbon dioxide
JYG33_16720	COG0583	DNA-binding transcription factor activity
JYG33_16740	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JYG33_16750	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
JYG33_16760	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JYG33_16765	COG3088	subunit of a heme lyase
JYG33_16770	COG4235	cytochrome complex assembly
JYG33_16775	COG0785	Cytochrome C biogenesis protein
JYG33_16785	COG2169	Transcriptional regulator
JYG33_16785	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JYG33_16805	COG0559	Belongs to the binding-protein-dependent transport system permease family
JYG33_16815	COG0411	ABC transporter
JYG33_16825	COG1858	cytochrome C peroxidase
JYG33_16830	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JYG33_16835	COG1959	2 iron, 2 sulfur cluster binding
JYG33_16840	COG2346	COG2346, Truncated hemoglobins
JYG33_16845	COG0463	Glycosyl transferase, family 2
JYG33_16885	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JYG33_16890	COG3383	formate dehydrogenase (NAD+) activity
JYG33_16905	COG1910	domain protein
JYG33_16910	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JYG33_16920	COG0303	'Molybdopterin
JYG33_16925	COG0521	Mo-molybdopterin cofactor biosynthetic process
JYG33_16930	COG0314	molybdopterin synthase activity
JYG33_16940	COG0315	cyclic pyranopterin monophosphate synthase activity
JYG33_16970	COG0678	peroxiredoxin activity
JYG33_16985	COG0697	spore germination
JYG33_17055	COG0815	Transfers the fatty acyl group on membrane lipoproteins
JYG33_17060	COG4535	Mg2 and Co2 transporter CorC
JYG33_17065	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
JYG33_17070	COG1702	phosphate starvation-inducible protein PhoH
JYG33_17075	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JYG33_17090	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JYG33_17095	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JYG33_17100	COG1862	Preprotein translocase
JYG33_17105	COG0343	queuine tRNA-ribosyltransferase activity
JYG33_17110	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
JYG33_17115	COG2027	D-alanyl-D-alanine carboxypeptidase
JYG33_17120	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
JYG33_17130	COG4575	ribosome binding
JYG33_17145	COG0583	DNA-binding transcription factor activity
JYG33_17160	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JYG33_17175	COG0154	amidase activity
JYG33_17185	COG0477	Major facilitator Superfamily
JYG33_17200	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
JYG33_17210	COG0436	Aminotransferase
JYG33_17220	COG0281	malic enzyme
JYG33_17220	COG0280	phosphate acetyltransferase
JYG33_17230	COG2732	(Barnase) inhibitor
JYG33_17235	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JYG33_17240	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JYG33_17245	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JYG33_17250	COG0126	phosphoglycerate kinase activity
JYG33_17270	COG0521	Mo-molybdopterin cofactor biosynthetic process
JYG33_17280	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
JYG33_17285	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JYG33_17290	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JYG33_17295	COG0009	L-threonylcarbamoyladenylate synthase
JYG33_17300	COG0596	Alpha beta hydrolase
JYG33_17305	COG2030	dehydratase
JYG33_17305	COG1012	belongs to the aldehyde dehydrogenase family
JYG33_17310	COG1960	acyl-CoA dehydrogenase activity
JYG33_17320	COG0405	Gamma-glutamyltransferase
JYG33_17330	COG0579	oxidoreductase
JYG33_17335	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JYG33_17340	COG0259	pyridoxamine-phosphate oxidase activity
JYG33_17350	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
JYG33_17365	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JYG33_17370	COG1215	transferase activity, transferring glycosyl groups
JYG33_17380	COG0488	(ABC) transporter
JYG33_17395	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
JYG33_17400	COG2894	cell division
JYG33_17410	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JYG33_17415	COG1271	oxidase subunit
JYG33_17420	COG1294	oxidase, subunit
JYG33_17425	COG0038	chloride channel
JYG33_17435	COG0514	ATP-dependent DNA helicase (RecQ)
JYG33_17440	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JYG33_17445	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JYG33_17450	COG0633	Ferredoxin
JYG33_17455	COG0488	(ABC) transporter
JYG33_17465	COG2001	Belongs to the MraZ family
JYG33_17470	COG0275	rRNA processing
JYG33_17475	COG3116	cell division
JYG33_17485	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JYG33_17490	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JYG33_17495	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
JYG33_17505	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
JYG33_17510	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JYG33_17515	COG1181	Belongs to the D-alanine--D-alanine ligase family
JYG33_17520	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
JYG33_17535	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
JYG33_17545	COG0739	heme binding
JYG33_17550	COG0653	protein targeting
JYG33_17560	COG2239	Acts as a magnesium transporter
JYG33_17570	COG1473	amidohydrolase
JYG33_17575	COG0318	PFAM AMP-dependent synthetase and ligase
JYG33_17585	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JYG33_17585	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
JYG33_17605	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JYG33_17610	COG2011	ABC-type metal ion transport system permease component
JYG33_17620	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYG33_17625	COG0765	amino acid transport
JYG33_17630	COG1126	abc transporter atp-binding protein
JYG33_17640	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JYG33_17650	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
JYG33_17655	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JYG33_17660	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
JYG33_17665	COG0700	Nucleoside recognition
JYG33_17680	COG0204	Acyl-transferase
JYG33_17685	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JYG33_17690	COG0751	glycine-tRNA ligase activity
JYG33_17695	COG0752	glycyl-tRNA synthetase alpha subunit
JYG33_17715	COG1309	transcriptional regulator
JYG33_17740	COG1573	uracil-dna glycosylase
JYG33_17745	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
JYG33_17750	COG0617	tRNA 3'-terminal CCA addition
JYG33_17760	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
JYG33_17765	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
JYG33_17775	COG1953	Uracil, thiamine, allantoin
JYG33_17780	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
JYG33_17785	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
JYG33_17790	COG0586	Pfam SNARE associated Golgi protein
JYG33_17795	COG0860	N-Acetylmuramoyl-L-alanine amidase
JYG33_17800	COG0802	atpase or kinase
JYG33_17810	COG3181	Tripartite tricarboxylate transporter family receptor
JYG33_17815	COG0281	malic enzyme
JYG33_17815	COG0280	phosphate acetyltransferase
JYG33_17820	COG0583	DNA-binding transcription factor activity
JYG33_17825	COG1012	belongs to the aldehyde dehydrogenase family
JYG33_17830	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JYG33_17865	COG1733	regulation of RNA biosynthetic process
JYG33_17870	COG2910	NAD(P)H-binding
JYG33_17885	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JYG33_17890	COG4974	Belongs to the 'phage' integrase family
JYG33_17895	COG0725	ABC transporter, periplasmic molybdate-binding protein
JYG33_17900	COG4149	molybdate abc transporter
JYG33_17905	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
JYG33_17920	COG1074	ATP-dependent DNA helicase activity
JYG33_17955	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JYG33_17965	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JYG33_17970	COG0505	Belongs to the CarA family
JYG33_17975	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JYG33_17985	COG4221	oxidoreductase activity
JYG33_17995	COG2233	PERMEase
JYG33_18005	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JYG33_18010	COG1534	Rna-binding protein
JYG33_18015	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
JYG33_18020	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JYG33_18030	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JYG33_18040	COG0248	Ppx GppA phosphatase
JYG33_18045	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
JYG33_18070	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JYG33_18120	COG1231	oxidoreductase activity
JYG33_18140	COG1368	sulfuric ester hydrolase activity
JYG33_18170	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JYG33_18175	COG3327	negative regulation of DNA-templated transcription, initiation
JYG33_18180	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JYG33_18195	COG0009	L-threonylcarbamoyladenylate synthase
JYG33_18200	COG1994	Peptidase M50
JYG33_18205	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JYG33_18210	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
JYG33_18225	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
JYG33_18235	COG0156	8-amino-7-oxononanoate synthase activity
JYG33_18240	COG2124	cytochrome p450
JYG33_18245	COG3135	benzoate transporter
JYG33_18250	COG2850	peptidyl-arginine hydroxylation
JYG33_18255	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
JYG33_18270	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JYG33_18275	COG0577	efflux transmembrane transporter activity
JYG33_18275	COG1136	(ABC) transporter
JYG33_18280	COG1538	Outer membrane efflux protein
JYG33_18285	COG0363	glucosamine-6-phosphate deaminase activity
JYG33_18290	COG1132	(ABC) transporter
JYG33_18300	COG3181	Tripartite tricarboxylate transporter family receptor
JYG33_18310	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JYG33_18320	COG0668	transmembrane transport
JYG33_18365	COG0154	amidase activity
JYG33_18370	COG2031	fatty acid transporter
JYG33_18385	COG0483	inositol monophosphate 1-phosphatase activity
JYG33_18390	COG1253	flavin adenine dinucleotide binding
JYG33_18395	COG1968	undecaprenyl-diphosphatase activity
JYG33_18415	COG0215	cysteine-tRNA ligase activity
JYG33_18425	COG0825	malonyl-CoA metabolic process
JYG33_18455	COG0330	HflC and HflK could
JYG33_18470	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JYG33_18490	COG4208	sulfate ABC transporter
JYG33_18495	COG3842	ATPase activity
JYG33_18505	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
JYG33_18535	COG1304	FMN binding
JYG33_18540	COG0435	Glutathione S-transferase
JYG33_18545	COG0655	NAD(P)H dehydrogenase (quinone) activity
JYG33_18560	COG2094	Belongs to the DNA glycosylase MPG family
JYG33_18565	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
JYG33_18570	COG2363	Small membrane protein
JYG33_18575	COG0598	Magnesium transport protein CorA
JYG33_18580	COG1960	acyl-CoA dehydrogenase activity
JYG33_18590	COG0747	negative chemotaxis
JYG33_18600	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JYG33_18605	COG4172	Belongs to the ABC transporter superfamily
JYG33_18615	COG3284	Transcriptional regulator
JYG33_18620	COG1012	belongs to the aldehyde dehydrogenase family
JYG33_18625	COG1454	alcohol dehydrogenase