locus-tag class description HML84_00005 PF00593 TonB dependent receptor HML84_00005 PF07715 TonB-dependent Receptor Plug Domain HML84_00065 PF00529 HlyD membrane-fusion protein of T1SS HML84_00065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HML84_00070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HML84_00070 PF00529 HlyD membrane-fusion protein of T1SS HML84_00110 PF11862 Domain of unknown function (DUF3382) HML84_00110 PF02653 Branched-chain amino acid transport system / permease component HML84_00115 PF00005 ABC transporter HML84_00115 PF12399 Branched-chain amino acid ATP-binding cassette transporter HML84_00150 PF02770 Acyl-CoA dehydrogenase, middle domain HML84_00150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HML84_00150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HML84_00155 PF00107 Zinc-binding dehydrogenase HML84_00155 PF16884 N-terminal domain of oxidoreductase HML84_00170 PF00593 TonB dependent receptor HML84_00170 PF07715 TonB-dependent Receptor Plug Domain HML84_00175 PF00593 TonB dependent receptor HML84_00175 PF07715 TonB-dependent Receptor Plug Domain HML84_00180 PF00593 TonB dependent receptor HML84_00180 PF07715 TonB-dependent Receptor Plug Domain HML84_00210 PF00596 Class II Aldolase and Adducin N-terminal domain HML84_00255 PF02566 OsmC-like protein HML84_00275 PF05860 haemagglutination activity domain HML84_00320 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HML84_00355 PF06794 Uncharacterised protein family (UPF0270) HML84_00395 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HML84_00395 PF00072 Response regulator receiver domain HML84_00395 PF01627 Hpt domain HML84_00395 PF00512 His Kinase A (phospho-acceptor) domain HML84_00395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HML84_00395 PF00672 HAMP domain HML84_00570 PF01180 Dihydroorotate dehydrogenase HML84_00750 PF00483 Nucleotidyl transferase HML84_00760 PF00132 Bacterial transferase hexapeptide (six repeats) HML84_00765 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HML84_00805 PF00534 Glycosyl transferases group 1 HML84_00805 PF13439 Glycosyltransferase Family 4 HML84_00825 PF00534 Glycosyl transferases group 1 HML84_00825 PF13439 Glycosyltransferase Family 4 HML84_00870 PF00535 Glycosyl transferase family 2 HML84_00900 PF01050 Mannose-6-phosphate isomerase HML84_00900 PF00483 Nucleotidyl transferase HML84_00935 PF00953 Glycosyl transferase family 4 HML84_00945 PF00953 Glycosyl transferase family 4 HML84_00965 PF10996 Beta-Casp domain HML84_00965 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HML84_00965 PF00753 Metallo-beta-lactamase superfamily HML84_01020 PF00210 Ferritin-like domain HML84_01055 PF03170 Bacterial cellulose synthase subunit HML84_01080 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) HML84_01085 PF01270 Glycosyl hydrolases family 8 HML84_01125 PF00561 alpha/beta hydrolase fold HML84_01130 PF03280 Proteobacterial lipase chaperone protein HML84_01160 PF01230 HIT domain HML84_01225 PF13419 Haloacid dehalogenase-like hydrolase HML84_01250 PF00800 Prephenate dehydratase HML84_01250 PF01842 ACT domain HML84_01250 PF01817 Chorismate mutase type II HML84_01265 PF02224 Cytidylate kinase HML84_01270 PF00575 S1 RNA binding domain HML84_01275 PF00216 Bacterial DNA-binding protein HML84_01335 PF02508 Rnf-Nqr subunit, membrane protein HML84_01430 PF00155 Aminotransferase class I and II HML84_01470 PF00512 His Kinase A (phospho-acceptor) domain HML84_01470 PF00672 HAMP domain HML84_01470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HML84_01510 PF03466 LysR substrate binding domain HML84_01510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HML84_01570 PF00378 Enoyl-CoA hydratase/isomerase HML84_01580 PF01799 [2Fe-2S] binding domain HML84_01580 PF00111 2Fe-2S iron-sulfur cluster binding domain HML84_01615 PF01258 Prokaryotic dksA/traR C4-type zinc finger HML84_01630 PF01641 SelR domain HML84_01695 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HML84_01695 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HML84_01715 PF04333 MlaA lipoprotein HML84_01730 PF01207 Dihydrouridine synthase (Dus) HML84_01765 PF09722 Protein of unknown function (DUF2384) HML84_01785 PF00285 Citrate synthase, C-terminal domain HML84_01790 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HML84_01795 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HML84_01800 PF00890 FAD binding domain HML84_01800 PF02910 Fumarate reductase flavoprotein C-term HML84_01805 PF13085 2Fe-2S iron-sulfur cluster binding domain HML84_01885 PF01575 MaoC like domain HML84_01970 PF01118 Semialdehyde dehydrogenase, NAD binding domain HML84_01970 PF02774 Semialdehyde dehydrogenase, dimerisation domain HML84_02005 PF00290 Tryptophan synthase alpha chain HML84_02045 PF07726 ATPase family associated with various cellular activities (AAA) HML84_02045 PF17863 AAA lid domain HML84_02055 PF01841 Transglutaminase-like superfamily HML84_02055 PF11992 Domain of unknown function (DUF3488) HML84_02055 PF13559 Domain of unknown function (DUF4129) HML84_02065 PF01841 Transglutaminase-like superfamily HML84_02065 PF13559 Domain of unknown function (DUF4129) HML84_02065 PF11992 Domain of unknown function (DUF3488) HML84_02105 PF01590 GAF domain HML84_02105 PF00990 Diguanylate cyclase, GGDEF domain HML84_02105 PF00360 Phytochrome region HML84_02105 PF00563 EAL domain HML84_02160 PF06167 Glucose-regulated metallo-peptidase M90 HML84_02165 PF06167 Glucose-regulated metallo-peptidase M90 HML84_02275 PF09278 MerR, DNA binding HML84_02275 PF00376 MerR family regulatory protein HML84_02280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HML84_02280 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HML84_02280 PF01627 Hpt domain HML84_02280 PF00672 HAMP domain HML84_02280 PF00072 Response regulator receiver domain HML84_02280 PF00512 His Kinase A (phospho-acceptor) domain HML84_02290 PF03737 Aldolase/RraA HML84_02320 PF00056 lactate/malate dehydrogenase, NAD binding domain HML84_02320 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HML84_02340 PF00135 Carboxylesterase family HML84_02345 PF01722 BolA-like protein HML84_02395 PF01171 PP-loop family HML84_02410 PF00440 Bacterial regulatory proteins, tetR family HML84_02445 PF02653 Branched-chain amino acid transport system / permease component HML84_02505 PF13673 Acetyltransferase (GNAT) domain HML84_02535 PF01967 MoaC family HML84_02555 PF00180 Isocitrate/isopropylmalate dehydrogenase HML84_02565 PF02617 ATP-dependent Clp protease adaptor protein ClpS HML84_02585 PF04376 Arginine-tRNA-protein transferase, N terminus HML84_02585 PF04377 Arginine-tRNA-protein transferase, C terminus HML84_02595 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HML84_02600 PF07992 Pyridine nucleotide-disulphide oxidoreductase HML84_02610 PF03548 Outer membrane lipoprotein carrier protein LolA HML84_02645 PF02635 DsrE/DsrF-like family HML84_02650 PF01027 Inhibitor of apoptosis-promoting Bax1 HML84_02690 PF00196 Bacterial regulatory proteins, luxR family HML84_02690 PF00072 Response regulator receiver domain HML84_02700 PF01066 CDP-alcohol phosphatidyltransferase HML84_02725 PF01739 CheR methyltransferase, SAM binding domain HML84_02725 PF03705 CheR methyltransferase, all-alpha domain HML84_02730 PF00072 Response regulator receiver domain HML84_02735 PF01339 CheB methylesterase HML84_02750 PF00437 Type II/IV secretion system protein HML84_02850 PF00596 Class II Aldolase and Adducin N-terminal domain HML84_02885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HML84_02885 PF03466 LysR substrate binding domain HML84_02900 PF00392 Bacterial regulatory proteins, gntR family HML84_02900 PF07729 FCD domain HML84_02910 PF00285 Citrate synthase, C-terminal domain HML84_02930 PF03618 Kinase/pyrophosphorylase HML84_02945 PF01464 Transglycosylase SLT domain HML84_02945 PF01551 Peptidase family M23 HML84_02945 PF10145 Phage-related minor tail protein HML84_02995 PF13488 Glycine zipper HML84_02995 PF00691 OmpA family HML84_03025 PF07690 Major Facilitator Superfamily HML84_03045 PF00005 ABC transporter HML84_03050 PF13472 GDSL-like Lipase/Acylhydrolase family HML84_03075 PF01553 Acyltransferase HML84_03105 PF04279 Intracellular septation protein A HML84_03130 PF04079 Segregation and condensation complex subunit ScpB HML84_03150 PF00004 ATPase family associated with various cellular activities (AAA) HML84_03150 PF01434 Peptidase family M41 HML84_03150 PF17862 AAA+ lid domain HML84_03160 PF00892 EamA-like transporter family HML84_03165 PF01145 SPFH domain / Band 7 family HML84_03165 PF16200 C-terminal region of band_7 HML84_03205 PF02627 Carboxymuconolactone decarboxylase family HML84_03280 PF17645 Arylmalonate decarboxylase HML84_03305 PF12802 MarR family HML84_03325 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HML84_03325 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HML84_03375 PF00582 Universal stress protein family HML84_03395 PF01544 CorA-like Mg2+ transporter protein HML84_03430 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HML84_03430 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HML84_03470 PF00849 RNA pseudouridylate synthase HML84_03480 PF00561 alpha/beta hydrolase fold HML84_03485 PF02805 Metal binding domain of Ada HML84_03485 PF12833 Helix-turn-helix domain HML84_03485 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HML84_03485 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HML84_03495 PF01435 Peptidase family M48 HML84_03515 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HML84_03515 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HML84_03560 PF00929 Exonuclease HML84_03575 PF16123 Hydroxyacylglutathione hydrolase C-terminus HML84_03575 PF00753 Metallo-beta-lactamase superfamily HML84_03635 PF00574 Clp protease HML84_03705 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HML84_03710 PF00149 Calcineurin-like phosphoesterase HML84_03775 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HML84_03775 PF00034 Cytochrome c HML84_03775 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HML84_03780 PF01799 [2Fe-2S] binding domain HML84_03780 PF00111 2Fe-2S iron-sulfur cluster binding domain HML84_03790 PF07690 Major Facilitator Superfamily HML84_03795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HML84_03795 PF03466 LysR substrate binding domain HML84_03915 PF04168 A predicted alpha-helical domain with a conserved ER motif. HML84_03915 PF14403 Circularly permuted ATP-grasp type 2 HML84_03925 PF00766 Electron transfer flavoprotein FAD-binding domain HML84_03925 PF01012 Electron transfer flavoprotein domain HML84_03930 PF01012 Electron transfer flavoprotein domain HML84_03970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HML84_03970 PF00672 HAMP domain HML84_03970 PF17200 Single Cache domain 2 HML84_03975 PF00793 DAHP synthetase I family HML84_04000 PF00520 Ion transport protein HML84_04000 PF00027 Cyclic nucleotide-binding domain HML84_04015 PF13806 Rieske-like [2Fe-2S] domain HML84_04150 PF07715 TonB-dependent Receptor Plug Domain HML84_04150 PF00593 TonB dependent receptor HML84_04215 PF00550 Phosphopantetheine attachment site HML84_04240 PF02620 Large ribosomal RNA subunit accumulation protein YceD HML84_04245 PF02545 Maf-like protein HML84_04275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HML84_04285 PF02321 Outer membrane efflux protein HML84_04290 PF02321 Outer membrane efflux protein HML84_04325 PF02472 Biopolymer transport protein ExbD/TolR HML84_04335 PF00753 Metallo-beta-lactamase superfamily HML84_04335 PF03772 Competence protein HML84_04345 PF13567 Domain of unknown function (DUF4131) HML84_04345 PF03772 Competence protein HML84_04345 PF00753 Metallo-beta-lactamase superfamily HML84_04385 PF00795 Carbon-nitrogen hydrolase HML84_04390 PF02645 Uncharacterised protein, DegV family COG1307 HML84_04405 PF01842 ACT domain HML84_04405 PF00551 Formyl transferase HML84_04445 PF00375 Sodium:dicarboxylate symporter family HML84_04450 PF00375 Sodium:dicarboxylate symporter family HML84_04460 PF00375 Sodium:dicarboxylate symporter family HML84_04500 PF02560 Cyanate lyase C-terminal domain HML84_04520 PF05437 Branched-chain amino acid transport protein (AzlD) HML84_04535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HML84_04535 PF00529 HlyD membrane-fusion protein of T1SS HML84_04540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HML84_04540 PF00529 HlyD membrane-fusion protein of T1SS HML84_04545 PF00005 ABC transporter HML84_04550 PF00005 ABC transporter HML84_04570 PF01497 Periplasmic binding protein HML84_04645 PF00392 Bacterial regulatory proteins, gntR family HML84_04645 PF00155 Aminotransferase class I and II HML84_04655 PF00795 Carbon-nitrogen hydrolase HML84_04670 PF02769 AIR synthase related protein, C-terminal domain HML84_04670 PF00586 AIR synthase related protein, N-terminal domain HML84_04740 PF00692 dUTPase HML84_04745 PF10609 NUBPL iron-transfer P-loop NTPase HML84_04765 PF10417 C-terminal domain of 1-Cys peroxiredoxin HML84_04765 PF00578 AhpC/TSA family HML84_04855 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system HML84_04880 PF01464 Transglycosylase SLT domain HML84_04880 PF14718 Soluble lytic murein transglycosylase L domain HML84_04930 PF04829 Pre-toxin domain with VENN motif HML84_04930 PF13018 Extended Signal Peptide of Type V secretion system HML84_04930 PF05860 haemagglutination activity domain HML84_04930 PF13332 Hemagglutinin repeat HML84_04960 PF13332 Hemagglutinin repeat HML84_04960 PF04829 Pre-toxin domain with VENN motif HML84_04960 PF15605 Bacterial toxin 28 HML84_04960 PF05860 haemagglutination activity domain HML84_04965 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HML84_04965 PF17287 POTRA domain HML84_04965 PF08479 POTRA domain, ShlB-type HML84_04985 PF03881 Fructosamine kinase HML84_05030 PF02542 YgbB family HML84_05040 PF04977 Septum formation initiator HML84_05065 PF01171 PP-loop family HML84_05065 PF11734 TilS substrate C-terminal domain HML84_05065 PF09179 TilS substrate binding domain HML84_05070 PF11734 TilS substrate C-terminal domain HML84_05070 PF09179 TilS substrate binding domain HML84_05070 PF01171 PP-loop family HML84_05095 PF00132 Bacterial transferase hexapeptide (six repeats) HML84_05095 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HML84_05140 PF01765 Ribosome recycling factor HML84_05155 PF00318 Ribosomal protein S2 HML84_05260 PF12804 MobA-like NTP transferase domain HML84_05265 PF01548 Transposase HML84_05265 PF02371 Transposase IS116/IS110/IS902 family HML84_05285 PF00543 Nitrogen regulatory protein P-II HML84_05300 PF03775 Septum formation inhibitor MinC, C-terminal domain HML84_05300 PF05209 Septum formation inhibitor MinC, N-terminal domain HML84_05310 PF03776 Septum formation topological specificity factor MinE HML84_05330 PF00005 ABC transporter HML84_05335 PF12399 Branched-chain amino acid ATP-binding cassette transporter HML84_05335 PF00005 ABC transporter HML84_05375 PF01575 MaoC like domain HML84_05405 PF13520 Amino acid permease HML84_05415 PF00561 alpha/beta hydrolase fold HML84_05420 PF00708 Acylphosphatase HML84_05430 PF03960 ArsC family HML84_05500 PF04315 Elongation factor P hydroxylase HML84_05570 PF04221 RelB antitoxin HML84_05620 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HML84_05620 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HML84_05630 PF10411 Disulfide bond isomerase protein N-terminus HML84_05630 PF13098 Thioredoxin-like domain HML84_05650 PF13205 Bacterial Ig-like domain HML84_05685 PF13205 Bacterial Ig-like domain HML84_05690 PF13205 Bacterial Ig-like domain HML84_05700 PF13205 Bacterial Ig-like domain HML84_05715 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HML84_05725 PF03466 LysR substrate binding domain HML84_05725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HML84_05780 PF00970 Oxidoreductase FAD-binding domain HML84_05780 PF00175 Oxidoreductase NAD-binding domain HML84_05780 PF00111 2Fe-2S iron-sulfur cluster binding domain HML84_05785 PF02508 Rnf-Nqr subunit, membrane protein HML84_05790 PF02508 Rnf-Nqr subunit, membrane protein HML84_05810 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HML84_05810 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HML84_05930 PF01205 Uncharacterized protein family UPF0029 HML84_05930 PF09186 Domain of unknown function (DUF1949) HML84_06045 PF02575 YbaB/EbfC DNA-binding family HML84_06075 PF10722 Putative bacterial sensory transduction regulator HML84_06100 PF02678 Pirin HML84_06100 PF05726 Pirin C-terminal cupin domain HML84_06135 PF07683 Cobalamin synthesis protein cobW C-terminal domain HML84_06135 PF02492 CobW/HypB/UreG, nucleotide-binding domain HML84_06230 PF02599 Global regulator protein family HML84_06260 PF02464 Competence-damaged protein HML84_06395 PF14850 DNA-binding domain of Proline dehydrogenase HML84_06395 PF01619 Proline dehydrogenase HML84_06395 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HML84_06395 PF00171 Aldehyde dehydrogenase family HML84_06405 PF12728 Helix-turn-helix domain HML84_06435 PF00872 Transposase, Mutator family HML84_06495 PF00072 Response regulator receiver domain HML84_06495 PF00486 Transcriptional regulatory protein, C terminal HML84_06510 PF04221 RelB antitoxin HML84_06625 PF00037 4Fe-4S binding domain HML84_06625 PF11953 Domain of unknown function (DUF3470) HML84_06695 PF12705 PD-(D/E)XK nuclease superfamily HML84_06695 PF13361 UvrD-like helicase C-terminal domain HML84_06695 PF00580 UvrD/REP helicase N-terminal domain HML84_06700 PF13361 UvrD-like helicase C-terminal domain HML84_06700 PF00580 UvrD/REP helicase N-terminal domain HML84_06700 PF12705 PD-(D/E)XK nuclease superfamily HML84_06705 PF12705 PD-(D/E)XK nuclease superfamily HML84_06705 PF13361 UvrD-like helicase C-terminal domain HML84_06705 PF00580 UvrD/REP helicase N-terminal domain HML84_06710 PF13361 UvrD-like helicase C-terminal domain HML84_06710 PF12705 PD-(D/E)XK nuclease superfamily HML84_06710 PF00580 UvrD/REP helicase N-terminal domain HML84_06715 PF12705 PD-(D/E)XK nuclease superfamily HML84_06715 PF00580 UvrD/REP helicase N-terminal domain HML84_06715 PF13361 UvrD-like helicase C-terminal domain HML84_06735 PF00743 Flavin-binding monooxygenase-like HML84_06750 PF13617 YnbE-like lipoprotein HML84_06800 PF00216 Bacterial DNA-binding protein HML84_06815 PF00453 Ribosomal protein L20 HML84_06870 PF01259 SAICAR synthetase HML84_06895 PF00578 AhpC/TSA family HML84_06905 PF00581 Rhodanese-like domain HML84_06905 PF01206 Sulfurtransferase TusA HML84_06915 PF07715 TonB-dependent Receptor Plug Domain HML84_06915 PF07660 Secretin and TonB N terminus short domain HML84_06915 PF00593 TonB dependent receptor HML84_06920 PF00593 TonB dependent receptor HML84_06920 PF07660 Secretin and TonB N terminus short domain HML84_06920 PF07715 TonB-dependent Receptor Plug Domain HML84_06925 PF00593 TonB dependent receptor HML84_06925 PF07715 TonB-dependent Receptor Plug Domain HML84_06935 PF00593 TonB dependent receptor HML84_06935 PF07660 Secretin and TonB N terminus short domain HML84_06935 PF07715 TonB-dependent Receptor Plug Domain HML84_06970 PF01593 Flavin containing amine oxidoreductase HML84_06990 PF13411 MerR HTH family regulatory protein HML84_07005 PF06508 Queuosine biosynthesis protein QueC HML84_07045 PF02472 Biopolymer transport protein ExbD/TolR HML84_07065 PF07499 RuvA, C-terminal domain HML84_07065 PF01330 RuvA N terminal domain HML84_07070 PF02075 Crossover junction endodeoxyribonuclease RuvC HML84_07075 PF02075 Crossover junction endodeoxyribonuclease RuvC HML84_07080 PF01709 Transcriptional regulator HML84_07085 PF01336 OB-fold nucleic acid binding domain HML84_07085 PF02938 GAD domain HML84_07085 PF00152 tRNA synthetases class II (D, K and N) HML84_07140 PF04357 TamB, inner membrane protein subunit of TAM complex HML84_07145 PF04357 TamB, inner membrane protein subunit of TAM complex HML84_07150 PF04357 TamB, inner membrane protein subunit of TAM complex HML84_07180 PF18158 Adaptive response protein AidB N-terminal domain HML84_07180 PF02770 Acyl-CoA dehydrogenase, middle domain HML84_07180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HML84_07220 PF00271 Helicase conserved C-terminal domain HML84_07220 PF00270 DEAD/DEAH box helicase HML84_07285 PF00202 Aminotransferase class-III HML84_07315 PF00072 Response regulator receiver domain HML84_07315 PF00486 Transcriptional regulatory protein, C terminal HML84_07335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HML84_07335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HML84_07335 PF00205 Thiamine pyrophosphate enzyme, central domain HML84_07375 PF16655 PhoD-like phosphatase, N-terminal domain HML84_07375 PF09423 PhoD-like phosphatase HML84_07415 PF01494 FAD binding domain HML84_07415 PF07976 Phenol hydroxylase, C-terminal dimerisation domain HML84_07420 PF07976 Phenol hydroxylase, C-terminal dimerisation domain HML84_07420 PF01494 FAD binding domain HML84_07430 PF01557 Fumarylacetoacetate (FAA) hydrolase family HML84_07455 PF01557 Fumarylacetoacetate (FAA) hydrolase family HML84_07470 PF01047 MarR family HML84_07475 PF03741 Integral membrane protein TerC family HML84_07500 PF00694 Aconitase C-terminal domain HML84_07500 PF00330 Aconitase family (aconitate hydratase) HML84_07570 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HML84_07590 PF01694 Rhomboid family HML84_07590 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HML84_07630 PF13205 Bacterial Ig-like domain HML84_07735 PF11892 Domain of unknown function (DUF3412) HML84_07735 PF03641 Possible lysine decarboxylase HML84_07735 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HML84_07740 PF00106 short chain dehydrogenase HML84_07835 PF03466 LysR substrate binding domain HML84_07835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HML84_07850 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HML84_07900 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HML84_07900 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HML84_07915 PF01011 PQQ enzyme repeat HML84_07935 PF05532 CsbD-like HML84_07940 PF13542 Helix-turn-helix domain of transposase family ISL3 HML84_07940 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HML84_07940 PF01610 Transposase HML84_07985 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HML84_07985 PF00460 Flagella basal body rod protein HML84_07985 PF07559 Flagellar basal body protein FlaE HML84_07990 PF13861 FlgD Tudor-like domain HML84_07990 PF13860 FlgD Ig-like domain HML84_07990 PF03963 Flagellar hook capping protein - N-terminal region HML84_08000 PF00460 Flagella basal body rod protein HML84_08055 PF00118 TCP-1/cpn60 chaperonin family HML84_08070 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HML84_08095 PF00072 Response regulator receiver domain HML84_08095 PF00486 Transcriptional regulatory protein, C terminal HML84_08125 PF01510 N-acetylmuramoyl-L-alanine amidase HML84_08175 PF00534 Glycosyl transferases group 1 HML84_08175 PF13439 Glycosyltransferase Family 4 HML84_08215 PF07963 Prokaryotic N-terminal methylation motif HML84_08215 PF00114 Pilin (bacterial filament) HML84_08235 PF01121 Dephospho-CoA kinase HML84_08240 PF03884 DNA gyrase inhibitor YacG HML84_08290 PF08478 POTRA domain, FtsQ-type HML84_08290 PF03799 Cell division protein FtsQ HML84_08325 PF01225 Mur ligase family, catalytic domain HML84_08325 PF02875 Mur ligase family, glutamate ligase domain HML84_08325 PF08245 Mur ligase middle domain HML84_08330 PF08245 Mur ligase middle domain HML84_08330 PF01225 Mur ligase family, catalytic domain HML84_08330 PF02875 Mur ligase family, glutamate ligase domain HML84_08370 PF04348 LppC putative lipoprotein HML84_08395 PF02798 Glutathione S-transferase, N-terminal domain HML84_08395 PF00043 Glutathione S-transferase, C-terminal domain HML84_08400 PF02167 Cytochrome C1 family HML84_08415 PF00380 Ribosomal protein S9/S16 HML84_08460 PF07729 FCD domain HML84_08460 PF00392 Bacterial regulatory proteins, gntR family HML84_08480 PF00005 ABC transporter HML84_08480 PF12399 Branched-chain amino acid ATP-binding cassette transporter HML84_08500 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HML84_08515 PF02129 X-Pro dipeptidyl-peptidase (S15 family) HML84_08535 PF01784 NIF3 (NGG1p interacting factor 3) HML84_08560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HML84_08595 PF12399 Branched-chain amino acid ATP-binding cassette transporter HML84_08595 PF00005 ABC transporter HML84_08605 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HML84_08615 PF03668 P-loop ATPase protein family HML84_08620 PF00381 PTS HPr component phosphorylation site HML84_08625 PF03448 MgtE intracellular N domain HML84_08625 PF01769 Divalent cation transporter HML84_08625 PF00571 CBS domain HML84_08740 PF04093 rod shape-determining protein MreD HML84_08745 PF04085 rod shape-determining protein MreC HML84_08755 PF02686 Glu-tRNAGln amidotransferase C subunit HML84_08830 PF02472 Biopolymer transport protein ExbD/TolR HML84_08870 PF08281 Sigma-70, region 4 HML84_08870 PF04542 Sigma-70 region 2 HML84_08870 PF12680 SnoaL-like domain HML84_08910 PF00899 ThiF family HML84_09040 PF06426 Serine acetyltransferase, N-terminal HML84_09040 PF00132 Bacterial transferase hexapeptide (six repeats) HML84_09070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HML84_09115 PF17754 MftR C-terminal domain HML84_09115 PF00440 Bacterial regulatory proteins, tetR family HML84_09150 PF00106 short chain dehydrogenase HML84_09205 PF13193 AMP-binding enzyme C-terminal domain HML84_09205 PF00501 AMP-binding enzyme HML84_09325 PF02789 Cytosol aminopeptidase family, N-terminal domain HML84_09325 PF00883 Cytosol aminopeptidase family, catalytic domain HML84_09375 PF01527 Transposase HML84_09400 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HML84_09400 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HML84_09420 PF03480 Bacterial extracellular solute-binding protein, family 7 HML84_09435 PF00501 AMP-binding enzyme HML84_09435 PF13193 AMP-binding enzyme C-terminal domain HML84_09440 PF13193 AMP-binding enzyme C-terminal domain HML84_09440 PF00501 AMP-binding enzyme HML84_09560 PF07963 Prokaryotic N-terminal methylation motif HML84_09560 PF00114 Pilin (bacterial filament) HML84_09565 PF02401 LytB protein HML84_09595 PF01649 Ribosomal protein S20 HML84_09615 PF00829 Ribosomal prokaryotic L21 protein HML84_09805 PF10417 C-terminal domain of 1-Cys peroxiredoxin HML84_09805 PF00578 AhpC/TSA family HML84_09815 PF01196 Ribosomal protein L17 HML84_09820 PF01000 RNA polymerase Rpb3/RpoA insert domain HML84_09820 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HML84_09820 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HML84_09830 PF00411 Ribosomal protein S11 HML84_09835 PF00416 Ribosomal protein S13/S18 HML84_09840 PF00444 Ribosomal protein L36 HML84_09850 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HML84_09865 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HML84_09880 PF00253 Ribosomal protein S14p/S29e HML84_09890 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HML84_09895 PF00238 Ribosomal protein L14p/L23e HML84_09900 PF00366 Ribosomal protein S17 HML84_09905 PF00831 Ribosomal L29 protein HML84_09925 PF00203 Ribosomal protein S19 HML84_09955 PF00009 Elongation factor Tu GTP binding domain HML84_09955 PF03144 Elongation factor Tu domain 2 HML84_09955 PF03143 Elongation factor Tu C-terminal domain HML84_09965 PF00177 Ribosomal protein S7p/S5e HML84_09990 PF00466 Ribosomal protein L10 HML84_09995 PF00687 Ribosomal protein L1p/L10e family HML84_10005 PF00467 KOW motif HML84_10005 PF02357 Transcription termination factor nusG HML84_10020 PF03144 Elongation factor Tu domain 2 HML84_10020 PF03143 Elongation factor Tu C-terminal domain HML84_10020 PF00009 Elongation factor Tu GTP binding domain HML84_10055 PF03099 Biotin/lipoate A/B protein ligase family HML84_10055 PF08279 HTH domain HML84_10055 PF02237 Biotin protein ligase C terminal domain HML84_10115 PF01521 Iron-sulphur cluster biosynthesis HML84_10265 PF02261 Aspartate decarboxylase HML84_10280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HML84_10280 PF00529 HlyD membrane-fusion protein of T1SS HML84_10295 PF00312 Ribosomal protein S15 HML84_10305 PF02033 Ribosome-binding factor A HML84_10335 PF03840 Preprotein translocase SecG subunit HML84_10345 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HML84_10345 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HML84_10345 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HML84_10345 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HML84_10360 PF01728 FtsJ-like methyltransferase HML84_10415 PF01475 Ferric uptake regulator family HML84_10420 PF04355 SmpA / OmlA family HML84_10435 PF01668 SmpB protein HML84_10465 PF03480 Bacterial extracellular solute-binding protein, family 7 HML84_10485 PF01425 Amidase HML84_10515 PF02633 Creatinine amidohydrolase HML84_10570 PF07690 Major Facilitator Superfamily HML84_10575 PF07690 Major Facilitator Superfamily HML84_10620 PF01522 Polysaccharide deacetylase HML84_10645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HML84_10645 PF03466 LysR substrate binding domain HML84_10740 PF01161 Phosphatidylethanolamine-binding protein HML84_10785 PF01329 Pterin 4 alpha carbinolamine dehydratase HML84_10845 PF01761 3-dehydroquinate synthase HML84_10850 PF01202 Shikimate kinase HML84_10890 PF01197 Ribosomal protein L31 HML84_10925 PF07724 AAA domain (Cdc48 subfamily) HML84_10925 PF00004 ATPase family associated with various cellular activities (AAA) HML84_10925 PF10431 C-terminal, D2-small domain, of ClpB protein HML84_10935 PF01209 ubiE/COQ5 methyltransferase family HML84_10955 PF02416 mttA/Hcf106 family HML84_10970 PF12146 Serine aminopeptidase, S33 HML84_11020 PF00120 Glutamine synthetase, catalytic domain HML84_11020 PF03951 Glutamine synthetase, beta-Grasp domain HML84_11025 PF01206 Sulfurtransferase TusA HML84_11040 PF08443 RimK-like ATP-grasp domain HML84_11040 PF18030 RimK PreATP-grasp domain HML84_11080 PF01551 Peptidase family M23 HML84_11090 PF04748 Divergent polysaccharide deacetylase HML84_11115 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HML84_11145 PF00977 Histidine biosynthesis protein HML84_11155 PF00475 Imidazoleglycerol-phosphate dehydratase HML84_11190 PF12849 PBP superfamily domain HML84_11330 PF02472 Biopolymer transport protein ExbD/TolR HML84_11335 PF01618 MotA/TolQ/ExbB proton channel family HML84_11405 PF08525 Opacity-associated protein A N-terminal motif HML84_11405 PF01476 LysM domain HML84_11405 PF01551 Peptidase family M23 HML84_11435 PF00795 Carbon-nitrogen hydrolase HML84_11445 PF02653 Branched-chain amino acid transport system / permease component HML84_11465 PF09663 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) HML84_11475 PF03466 LysR substrate binding domain HML84_11475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HML84_11480 PF01527 Transposase HML84_11485 PF00665 Integrase core domain HML84_11520 PF00005 ABC transporter HML84_11520 PF12399 Branched-chain amino acid ATP-binding cassette transporter HML84_11545 PF01638 HxlR-like helix-turn-helix HML84_11555 PF00557 Metallopeptidase family M24 HML84_11620 PF12833 Helix-turn-helix domain HML84_11620 PF06719 AraC-type transcriptional regulator N-terminus HML84_11675 PF00487 Fatty acid desaturase HML84_11690 PF00593 TonB dependent receptor HML84_11690 PF07715 TonB-dependent Receptor Plug Domain HML84_11700 PF01613 Flavin reductase like domain HML84_11705 PF02810 SEC-C motif HML84_11710 PF02810 SEC-C motif HML84_11720 PF01047 MarR family HML84_11750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HML84_11750 PF00529 HlyD membrane-fusion protein of T1SS HML84_11775 PF00180 Isocitrate/isopropylmalate dehydrogenase HML84_11775 PF18324 Hypothetical protein TT1725 HML84_11840 PF00743 Flavin-binding monooxygenase-like HML84_11855 PF00440 Bacterial regulatory proteins, tetR family HML84_11855 PF02909 Tetracyclin repressor-like, C-terminal domain HML84_11900 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HML84_11930 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HML84_11960 PF00593 TonB dependent receptor HML84_11960 PF07715 TonB-dependent Receptor Plug Domain HML84_11995 PF01610 Transposase HML84_11995 PF13542 Helix-turn-helix domain of transposase family ISL3 HML84_11995 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HML84_12000 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HML84_12030 PF00459 Inositol monophosphatase family HML84_12050 PF13542 Helix-turn-helix domain of transposase family ISL3 HML84_12050 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HML84_12050 PF01610 Transposase HML84_12175 PF01925 Sulfite exporter TauE/SafE HML84_12215 PF07581 The GLUG motif HML84_12215 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) HML84_12220 PF07581 The GLUG motif HML84_12220 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) HML84_12240 PF09456 RcsC Alpha-Beta-Loop (ABL) HML84_12240 PF00072 Response regulator receiver domain HML84_12240 PF00512 His Kinase A (phospho-acceptor) domain HML84_12240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HML84_12255 PF04381 Putative exonuclease, RdgC HML84_12285 PF01425 Amidase HML84_12295 PF01425 Amidase HML84_12300 PF01425 Amidase HML84_12320 PF00313 'Cold-shock' DNA-binding domain HML84_12350 PF01594 AI-2E family transporter HML84_12375 PF01258 Prokaryotic dksA/traR C4-type zinc finger HML84_12410 PF13677 Membrane MotB of proton-channel complex MotA/MotB HML84_12410 PF00691 OmpA family HML84_12475 PF01850 PIN domain HML84_12490 PF00141 Peroxidase HML84_12495 PF00141 Peroxidase HML84_12545 PF06719 AraC-type transcriptional regulator N-terminus HML84_12545 PF12833 Helix-turn-helix domain HML84_12590 PF04773 FecR protein HML84_12590 PF16220 Domain of unknown function (DUF4880) HML84_12670 PF01527 Transposase HML84_12720 PF13205 Bacterial Ig-like domain HML84_12725 PF13205 Bacterial Ig-like domain HML84_12800 PF05164 Cell division protein ZapA HML84_12825 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HML84_12865 PF03466 LysR substrate binding domain HML84_12865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HML84_12870 PF01979 Amidohydrolase family HML84_12875 PF01979 Amidohydrolase family HML84_12900 PF00162 Phosphoglycerate kinase HML84_12925 PF00438 S-adenosylmethionine synthetase, N-terminal domain HML84_12925 PF02773 S-adenosylmethionine synthetase, C-terminal domain HML84_12925 PF02772 S-adenosylmethionine synthetase, central domain HML84_12940 PF13649 Methyltransferase domain HML84_12965 PF12833 Helix-turn-helix domain HML84_12985 PF00107 Zinc-binding dehydrogenase HML84_12985 PF08240 Alcohol dehydrogenase GroES-like domain HML84_12990 PF00756 Putative esterase HML84_13020 PF01699 Sodium/calcium exchanger protein HML84_13030 PF01699 Sodium/calcium exchanger protein HML84_13060 PF00005 ABC transporter HML84_13065 PF18075 FtsX extracellular domain HML84_13130 PF00561 alpha/beta hydrolase fold HML84_13130 PF07021 Methionine biosynthesis protein MetW HML84_13135 PF01725 Ham1 family HML84_13140 PF04055 Radical SAM superfamily HML84_13140 PF06969 HemN C-terminal domain HML84_13310 PF00005 ABC transporter HML84_13320 PF00692 dUTPase HML84_13345 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HML84_13345 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HML84_13345 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HML84_13345 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HML84_13350 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HML84_13350 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HML84_13350 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HML84_13350 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HML84_13355 PF00696 Amino acid kinase family HML84_13415 PF02515 CoA-transferase family III HML84_13440 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HML84_13450 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HML84_13460 PF01192 RNA polymerase Rpb6 HML84_13490 PF00731 AIR carboxylase HML84_13580 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HML84_13580 PF01488 Shikimate / quinate 5-dehydrogenase HML84_13580 PF08501 Shikimate dehydrogenase substrate binding domain HML84_13615 PF01189 16S rRNA methyltransferase RsmB/F HML84_13615 PF01029 NusB family HML84_13700 PF13205 Bacterial Ig-like domain HML84_13740 PF14748 Pyrroline-5-carboxylate reductase dimerisation HML84_13740 PF03807 NADP oxidoreductase coenzyme F420-dependent HML84_13755 PF00437 Type II/IV secretion system protein HML84_13760 PF02566 OsmC-like protein HML84_13780 PF02525 Flavodoxin-like fold HML84_13805 PF07715 TonB-dependent Receptor Plug Domain HML84_13810 PF07715 TonB-dependent Receptor Plug Domain HML84_13820 PF03150 Di-haem cytochrome c peroxidase HML84_13835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HML84_13835 PF08521 Two-component sensor kinase N-terminal HML84_13835 PF00512 His Kinase A (phospho-acceptor) domain HML84_13855 PF08534 Redoxin HML84_13890 PF03652 Holliday junction resolvase HML84_13970 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HML84_13980 PF01145 SPFH domain / Band 7 family HML84_13980 PF16200 C-terminal region of band_7 HML84_14020 PF02909 Tetracyclin repressor-like, C-terminal domain HML84_14020 PF00440 Bacterial regulatory proteins, tetR family HML84_14065 PF02254 TrkA-N domain HML84_14065 PF00999 Sodium/hydrogen exchanger family HML84_14105 PF18030 RimK PreATP-grasp domain HML84_14105 PF08443 RimK-like ATP-grasp domain HML84_14120 PF00132 Bacterial transferase hexapeptide (six repeats) HML84_14130 PF03352 Methyladenine glycosylase HML84_14150 PF00005 ABC transporter HML84_14150 PF12399 Branched-chain amino acid ATP-binding cassette transporter HML84_14155 PF11862 Domain of unknown function (DUF3382) HML84_14155 PF02653 Branched-chain amino acid transport system / permease component HML84_14200 PF00816 H-NS histone family HML84_14225 PF00468 Ribosomal protein L34 HML84_14230 PF00825 Ribonuclease P HML84_14250 PF00990 Diguanylate cyclase, GGDEF domain HML84_14250 PF17151 Periplasmic sensor domain HML84_14260 PF00206 Lyase HML84_14260 PF10415 Fumarase C C-terminus HML84_14275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HML84_14315 PF13419 Haloacid dehalogenase-like hydrolase HML84_14365 PF00137 ATP synthase subunit C HML84_14370 PF00430 ATP synthase B/B' CF(0) HML84_14375 PF00213 ATP synthase delta (OSCP) subunit HML84_14395 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HML84_14395 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HML84_14435 PF00106 short chain dehydrogenase HML84_14455 PF13458 Periplasmic binding protein HML84_14515 PF00355 Rieske [2Fe-2S] domain HML84_14520 PF00440 Bacterial regulatory proteins, tetR family HML84_14520 PF17925 Tetracyclin repressor-like, C-terminal domain HML84_14535 PF18158 Adaptive response protein AidB N-terminal domain HML84_14535 PF02770 Acyl-CoA dehydrogenase, middle domain HML84_14535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HML84_14580 PF03480 Bacterial extracellular solute-binding protein, family 7 HML84_14585 PF03061 Thioesterase superfamily HML84_14615 PF00005 ABC transporter HML84_14620 PF01895 PhoU domain HML84_14625 PF01022 Bacterial regulatory protein, arsR family HML84_14655 PF01169 Uncharacterized protein family UPF0016 HML84_14665 PF04102 SlyX HML84_14680 PF00486 Transcriptional regulatory protein, C terminal HML84_14680 PF00072 Response regulator receiver domain HML84_14695 PF00301 Rubredoxin HML84_14745 PF07859 alpha/beta hydrolase fold HML84_14780 PF00106 short chain dehydrogenase HML84_14805 PF00924 Mechanosensitive ion channel HML84_14805 PF05552 Conserved TM helix HML84_14830 PF06628 Catalase-related immune-responsive HML84_14830 PF00199 Catalase HML84_14865 PF05721 Phytanoyl-CoA dioxygenase (PhyH) HML84_14875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HML84_14875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HML84_14875 PF02770 Acyl-CoA dehydrogenase, middle domain HML84_14940 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) HML84_14945 PF03334 Na+/H+ antiporter subunit HML84_14960 PF00034 Cytochrome c HML84_14965 PF01323 DSBA-like thioredoxin domain HML84_14995 PF00561 alpha/beta hydrolase fold HML84_15085 PF04972 BON domain HML84_15085 PF00263 Bacterial type II and III secretion system protein HML84_15085 PF13629 Pilus formation protein N terminal region HML84_15170 PF00210 Ferritin-like domain HML84_15175 PF13533 Biotin-lipoyl like HML84_15380 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HML84_15430 PF04380 Membrane fusogenic activity HML84_15435 PF00543 Nitrogen regulatory protein P-II HML84_15440 PF00909 Ammonium Transporter Family HML84_15455 PF04403 Paraquat-inducible protein A HML84_15490 PF01323 DSBA-like thioredoxin domain HML84_15495 PF17284 Spermidine synthase tetramerisation domain HML84_15565 PF00994 Probable molybdopterin binding domain HML84_15605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HML84_15605 PF03466 LysR substrate binding domain HML84_15610 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HML84_15620 PF00484 Carbonic anhydrase HML84_15630 PF05275 Copper resistance protein B precursor (CopB) HML84_15635 PF07732 Multicopper oxidase HML84_15635 PF07731 Multicopper oxidase HML84_15635 PF00394 Multicopper oxidase HML84_15640 PF07732 Multicopper oxidase HML84_15640 PF07731 Multicopper oxidase HML84_15640 PF00394 Multicopper oxidase HML84_15645 PF07732 Multicopper oxidase HML84_15645 PF07731 Multicopper oxidase HML84_15645 PF00394 Multicopper oxidase HML84_15670 PF00072 Response regulator receiver domain HML84_15670 PF02954 Bacterial regulatory protein, Fis family HML84_15670 PF00158 Sigma-54 interaction domain HML84_15710 PF00543 Nitrogen regulatory protein P-II HML84_15735 PF01545 Cation efflux family HML84_15745 PF13411 MerR HTH family regulatory protein HML84_15765 PF09957 Bacterial antitoxin of type II TA system, VapB HML84_15770 PF01850 PIN domain HML84_15795 PF00529 HlyD membrane-fusion protein of T1SS HML84_15795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HML84_15805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HML84_15805 PF00529 HlyD membrane-fusion protein of T1SS HML84_15815 PF01545 Cation efflux family HML84_15830 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HML84_15855 PF00593 TonB dependent receptor HML84_15855 PF07715 TonB-dependent Receptor Plug Domain HML84_15865 PF00593 TonB dependent receptor HML84_15865 PF07715 TonB-dependent Receptor Plug Domain HML84_15870 PF07715 TonB-dependent Receptor Plug Domain HML84_15870 PF07660 Secretin and TonB N terminus short domain HML84_15870 PF00593 TonB dependent receptor HML84_15935 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HML84_15960 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HML84_15975 PF00361 Proton-conducting membrane transporter HML84_16050 PF07498 Rho termination factor, N-terminal domain HML84_16050 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HML84_16050 PF07497 Rho termination factor, RNA-binding domain HML84_16055 PF00085 Thioredoxin HML84_16090 PF01272 Transcription elongation factor, GreA/GreB, C-term HML84_16090 PF03449 Transcription elongation factor, N-terminal HML84_16120 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HML84_16120 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HML84_16125 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HML84_16155 PF00072 Response regulator receiver domain HML84_16165 PF00486 Transcriptional regulatory protein, C terminal HML84_16165 PF00072 Response regulator receiver domain HML84_16195 PF14698 Argininosuccinate lyase C-terminal HML84_16195 PF00206 Lyase HML84_16330 PF00535 Glycosyl transferase family 2 HML84_16355 PF05159 Capsule polysaccharide biosynthesis protein HML84_16375 PF03279 Bacterial lipid A biosynthesis acyltransferase HML84_16420 PF01790 Prolipoprotein diacylglyceryl transferase HML84_16455 PF01555 DNA methylase HML84_16455 PF18273 Type III R-M EcoP15I C-terminal domain HML84_16485 PF04287 tRNA pseudouridine synthase C HML84_16490 PF13419 Haloacid dehalogenase-like hydrolase HML84_16555 PF04773 FecR protein HML84_16555 PF16220 Domain of unknown function (DUF4880) HML84_16570 PF00376 MerR family regulatory protein HML84_16570 PF09278 MerR, DNA binding HML84_16580 PF00403 Heavy-metal-associated domain HML84_16600 PF07715 TonB-dependent Receptor Plug Domain HML84_16600 PF00593 TonB dependent receptor HML84_16605 PF07715 TonB-dependent Receptor Plug Domain HML84_16605 PF00593 TonB dependent receptor HML84_16625 PF02627 Carboxymuconolactone decarboxylase family HML84_16630 PF00155 Aminotransferase class I and II HML84_16630 PF00392 Bacterial regulatory proteins, gntR family HML84_16635 PF00155 Aminotransferase class I and II HML84_16645 PF13417 Glutathione S-transferase, N-terminal domain HML84_16645 PF14497 Glutathione S-transferase, C-terminal domain HML84_16680 PF13419 Haloacid dehalogenase-like hydrolase HML84_16730 PF00149 Calcineurin-like phosphoesterase HML84_16785 PF01804 Penicillin amidase HML84_16800 PF12697 Alpha/beta hydrolase family HML84_16810 PF09285 Elongation factor P, C-terminal HML84_16810 PF08207 Elongation factor P (EF-P) KOW-like domain HML84_16810 PF01132 Elongation factor P (EF-P) OB domain HML84_16830 PF00563 EAL domain HML84_16830 PF00072 Response regulator receiver domain HML84_16830 PF00990 Diguanylate cyclase, GGDEF domain HML84_16865 PF00929 Exonuclease HML84_16875 PF01322 Cytochrome C' HML84_16900 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HML84_16905 PF11741 AMIN domain HML84_16905 PF01520 N-acetylmuramoyl-L-alanine amidase HML84_16915 PF08676 MutL C terminal dimerisation domain HML84_16915 PF01119 DNA mismatch repair protein, C-terminal domain HML84_16925 PF17209 Hfq protein HML84_16950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HML84_16950 PF13188 PAS domain HML84_16950 PF08448 PAS fold HML84_16950 PF00512 His Kinase A (phospho-acceptor) domain HML84_16950 PF00072 Response regulator receiver domain HML84_16960 PF00072 Response regulator receiver domain HML84_16960 PF00486 Transcriptional regulatory protein, C terminal HML84_16965 PF00486 Transcriptional regulatory protein, C terminal HML84_16965 PF00072 Response regulator receiver domain HML84_16985 PF00709 Adenylosuccinate synthetase HML84_17040 PF01084 Ribosomal protein S18 HML84_17045 PF01281 Ribosomal protein L9, N-terminal domain HML84_17045 PF03948 Ribosomal protein L9, C-terminal domain HML84_17080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HML84_17080 PF02203 Tar ligand binding domain homologue HML84_17080 PF00672 HAMP domain HML84_17090 PF13847 Methyltransferase domain HML84_17095 PF01590 GAF domain HML84_17095 PF00563 EAL domain HML84_17095 PF00360 Phytochrome region HML84_17095 PF00990 Diguanylate cyclase, GGDEF domain HML84_17115 PF08281 Sigma-70, region 4 HML84_17115 PF04542 Sigma-70 region 2 HML84_17155 PF03477 ATP cone domain HML84_17165 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HML84_17165 PF01872 RibD C-terminal domain HML84_17175 PF00990 Diguanylate cyclase, GGDEF domain HML84_17190 PF06243 Phenylacetic acid degradation B HML84_17195 PF05138 Phenylacetic acid catabolic protein HML84_17200 PF01883 Iron-sulfur cluster assembly protein HML84_17240 PF03852 DNA mismatch endonuclease Vsr HML84_17245 PF00145 C-5 cytosine-specific DNA methylase HML84_17265 PF01381 Helix-turn-helix HML84_17275 PF01381 Helix-turn-helix HML84_17290 PF01381 Helix-turn-helix HML84_17375 PF00583 Acetyltransferase (GNAT) family HML84_17395 PF00890 FAD binding domain HML84_17395 PF14537 Cytochrome c3 HML84_17400 PF04205 FMN-binding domain HML84_17400 PF00890 FAD binding domain HML84_17435 PF03116 NQR2, RnfD, RnfE family HML84_17445 PF11973 NQRA C-terminal domain HML84_17445 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HML84_17505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HML84_17505 PF03466 LysR substrate binding domain HML84_17580 PF00132 Bacterial transferase hexapeptide (six repeats) HML84_17590 PF03061 Thioesterase superfamily HML84_17650 PF01047 MarR family HML84_17665 PF07992 Pyridine nucleotide-disulphide oxidoreductase HML84_17665 PF14759 Reductase C-terminal HML84_17685 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HML84_17690 PF03480 Bacterial extracellular solute-binding protein, family 7 HML84_17705 PF17645 Arylmalonate decarboxylase HML84_17710 PF00561 alpha/beta hydrolase fold HML84_17755 PF00885 6,7-dimethyl-8-ribityllumazine synthase HML84_17760 PF01029 NusB family HML84_17770 PF04608 Phosphatidylglycerophosphatase A HML84_17775 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HML84_17775 PF02779 Transketolase, pyrimidine binding domain HML84_17775 PF02780 Transketolase, C-terminal domain HML84_17780 PF00348 Polyprenyl synthetase HML84_17785 PF02609 Exonuclease VII small subunit HML84_17795 PF01207 Dihydrouridine synthase (Dus) HML84_17840 PF06339 Ectoine synthase HML84_17850 PF00583 Acetyltransferase (GNAT) family HML84_17855 PF01047 MarR family HML84_17865 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HML84_17905 PF01809 Putative membrane protein insertion efficiency factor HML84_17915 PF01502 Phosphoribosyl-AMP cyclohydrolase HML84_17945 PF03869 Arc-like DNA binding domain HML84_17950 PF03466 LysR substrate binding domain HML84_17950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HML84_17960 PF01230 HIT domain HML84_18030 PF02253 Phospholipase A1 HML84_18035 PF03966 Trm112p-like protein HML84_18065 PF17837 4'-phosphopantetheinyl transferase N-terminal domain HML84_18065 PF01648 4'-phosphopantetheinyl transferase superfamily HML84_18090 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HML84_18090 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HML84_18100 PF02082 Transcriptional regulator HML84_18160 PF03060 Nitronate monooxygenase HML84_18210 PF13085 2Fe-2S iron-sulfur cluster binding domain HML84_18255 PF01165 Ribosomal protein S21 HML84_18265 PF02660 Glycerol-3-phosphate acyltransferase HML84_18280 PF01743 Poly A polymerase head domain HML84_18280 PF12627 Probable RNA and SrmB- binding site of polymerase A HML84_18280 PF01966 HD domain HML84_18295 PF03060 Nitronate monooxygenase HML84_18335 PF04379 ApaG domain HML84_18360 PF01636 Phosphotransferase enzyme family HML84_18365 PF01636 Phosphotransferase enzyme family HML84_18370 PF01636 Phosphotransferase enzyme family HML84_18395 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HML84_18395 PF07992 Pyridine nucleotide-disulphide oxidoreductase HML84_18415 PF00510 Cytochrome c oxidase subunit III HML84_18435 PF00072 Response regulator receiver domain HML84_18460 PF00218 Indole-3-glycerol phosphate synthase HML84_18490 PF02566 OsmC-like protein HML84_18500 PF03232 Ubiquinone biosynthesis protein COQ7 HML84_18520 PF01627 Hpt domain HML84_18520 PF00072 Response regulator receiver domain HML84_18520 PF00512 His Kinase A (phospho-acceptor) domain HML84_18520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HML84_18520 PF00672 HAMP domain HML84_18555 PF02843 Phosphoribosylglycinamide synthetase, C domain HML84_18555 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HML84_18555 PF02844 Phosphoribosylglycinamide synthetase, N domain HML84_18560 PF01808 AICARFT/IMPCHase bienzyme HML84_18560 PF02142 MGS-like domain HML84_18565 PF02954 Bacterial regulatory protein, Fis family HML84_18605 PF01220 Dehydroquinase class II HML84_18685 PF03922 OmpW family HML84_18700 PF00860 Permease family HML84_18770 PF12399 Branched-chain amino acid ATP-binding cassette transporter HML84_18770 PF00005 ABC transporter HML84_18810 PF01225 Mur ligase family, catalytic domain HML84_18810 PF02875 Mur ligase family, glutamate ligase domain HML84_18810 PF08245 Mur ligase middle domain HML84_18835 PF01618 MotA/TolQ/ExbB proton channel family HML84_18840 PF04170 NlpE N-terminal domain HML84_18840 PF17185 NlpE C-terminal OB domain HML84_18850 PF08281 Sigma-70, region 4 HML84_18850 PF04542 Sigma-70 region 2 HML84_18945 PF03527 RHS protein HML84_18960 PF01527 Transposase HML84_18965 PF04055 Radical SAM superfamily HML84_18965 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HML84_18975 PF04359 Protein of unknown function (DUF493) HML84_19025 PF00171 Aldehyde dehydrogenase family HML84_19060 PF04273 Putative phosphatase (DUF442) HML84_19060 PF00753 Metallo-beta-lactamase superfamily HML84_19095 PF00528 Binding-protein-dependent transport system inner membrane component HML84_19180 PF00581 Rhodanese-like domain HML84_19195 PF00106 short chain dehydrogenase HML84_19260 PF04011 LemA family HML84_19345 PF06906 Protein of unknown function (DUF1272) HML84_19350 PF01177 Asp/Glu/Hydantoin racemase HML84_19430 PF01541 GIY-YIG catalytic domain HML84_19470 PF02082 Transcriptional regulator HML84_19485 PF02657 Fe-S metabolism associated domain HML84_19490 PF01883 Iron-sulfur cluster assembly protein HML84_19495 PF01521 Iron-sulphur cluster biosynthesis HML84_19505 PF01458 Uncharacterized protein family (UPF0051) HML84_19525 PF00334 Nucleoside diphosphate kinase HML84_19580 PF00593 TonB dependent receptor HML84_19580 PF07715 TonB-dependent Receptor Plug Domain HML84_19860 PF01638 HxlR-like helix-turn-helix HML84_19915 PF13411 MerR HTH family regulatory protein HML84_19920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HML84_19920 PF03466 LysR substrate binding domain HML84_19985 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA HML84_20045 PF08240 Alcohol dehydrogenase GroES-like domain HML84_20045 PF00107 Zinc-binding dehydrogenase HML84_20060 PF03069 Acetamidase/Formamidase family HML84_20090 PF01979 Amidohydrolase family HML84_20095 PF01979 Amidohydrolase family HML84_20100 PF00528 Binding-protein-dependent transport system inner membrane component HML84_20105 PF00005 ABC transporter HML84_20145 PF01970 Tripartite tricarboxylate transporter TctA family HML84_20150 PF00171 Aldehyde dehydrogenase family HML84_20315 PF01784 NIF3 (NGG1p interacting factor 3) HML84_20335 PF01734 Patatin-like phospholipase HML84_20360 PF13332 Hemagglutinin repeat HML84_20360 PF05860 haemagglutination activity domain HML84_20360 PF04829 Pre-toxin domain with VENN motif HML84_20375 PF13332 Hemagglutinin repeat HML84_20375 PF04829 Pre-toxin domain with VENN motif HML84_20375 PF05594 Haemagluttinin repeat HML84_20375 PF05860 haemagglutination activity domain HML84_20375 PF15526 Novel toxin 21 HML84_20380 PF13332 Hemagglutinin repeat HML84_20380 PF05860 haemagglutination activity domain HML84_20380 PF15526 Novel toxin 21 HML84_20380 PF05594 Haemagluttinin repeat HML84_20380 PF04829 Pre-toxin domain with VENN motif HML84_20390 PF17287 POTRA domain HML84_20390 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HML84_20390 PF08479 POTRA domain, ShlB-type HML84_20440 PF04226 Transglycosylase associated protein HML84_20450 PF13098 Thioredoxin-like domain HML84_20450 PF10411 Disulfide bond isomerase protein N-terminus HML84_20460 PF00742 Homoserine dehydrogenase HML84_20460 PF03447 Homoserine dehydrogenase, NAD binding domain HML84_20460 PF01842 ACT domain HML84_20475 PF02028 BCCT, betaine/carnitine/choline family transporter HML84_20635 PF00005 ABC transporter HML84_20635 PF03466 LysR substrate binding domain HML84_20650 PF01575 MaoC like domain HML84_20665 PF00175 Oxidoreductase NAD-binding domain HML84_20665 PF00970 Oxidoreductase FAD-binding domain HML84_20665 PF00111 2Fe-2S iron-sulfur cluster binding domain HML84_20710 PF00072 Response regulator receiver domain HML84_20710 PF00486 Transcriptional regulatory protein, C terminal HML84_20830 PF00011 Hsp20/alpha crystallin family HML84_20835 PF07311 Dodecin HML84_20925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HML84_20925 PF03466 LysR substrate binding domain HML84_21075 PF06114 IrrE N-terminal-like domain HML84_21130 PF00152 tRNA synthetases class II (D, K and N) HML84_21130 PF01336 OB-fold nucleic acid binding domain HML84_21215 PF10502 Signal peptidase, peptidase S26 HML84_21235 PF01926 50S ribosome-binding GTPase HML84_21235 PF07650 KH domain HML84_21250 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HML84_21250 PF00672 HAMP domain HML84_21250 PF00072 Response regulator receiver domain HML84_21250 PF01627 Hpt domain HML84_21250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HML84_21250 PF00512 His Kinase A (phospho-acceptor) domain HML84_21285 PF03819 MazG nucleotide pyrophosphohydrolase domain HML84_21305 PF13411 MerR HTH family regulatory protein HML84_21310 PF00872 Transposase, Mutator family HML84_21320 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HML84_21325 PF13542 Helix-turn-helix domain of transposase family ISL3 HML84_21325 PF01610 Transposase HML84_21325 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HML84_21340 PF07977 FabA-like domain HML84_21345 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HML84_21345 PF01578 Cytochrome C assembly protein HML84_21350 PF01578 Cytochrome C assembly protein HML84_21350 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HML84_21360 PF03918 Cytochrome C biogenesis protein HML84_21370 PF05191 Adenylate kinase, active site lid HML84_21435 PF03466 LysR substrate binding domain HML84_21435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HML84_21455 PF00005 ABC transporter HML84_21460 PF03379 CcmB protein HML84_21465 PF01578 Cytochrome C assembly protein HML84_21540 PF03450 CO dehydrogenase flavoprotein C-terminal domain HML84_21540 PF00941 FAD binding domain in molybdopterin dehydrogenase HML84_21570 PF13018 Extended Signal Peptide of Type V secretion system HML84_21575 PF01272 Transcription elongation factor, GreA/GreB, C-term HML84_21575 PF14760 Rnk N-terminus HML84_21610 PF00211 Adenylate and Guanylate cyclase catalytic domain HML84_21615 PF00881 Nitroreductase family HML84_21625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HML84_21625 PF03466 LysR substrate binding domain HML84_21650 PF00561 alpha/beta hydrolase fold HML84_21655 PF00561 alpha/beta hydrolase fold HML84_21665 PF00248 Aldo/keto reductase family HML84_21710 PF00691 OmpA family HML84_21720 PF00501 AMP-binding enzyme HML84_21720 PF13193 AMP-binding enzyme C-terminal domain HML84_21735 PF02653 Branched-chain amino acid transport system / permease component HML84_21775 PF01575 MaoC like domain HML84_21780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HML84_21780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HML84_21780 PF02770 Acyl-CoA dehydrogenase, middle domain HML84_21790 PF17932 Tetracyclin repressor-like, C-terminal domain HML84_21790 PF00440 Bacterial regulatory proteins, tetR family HML84_21795 PF00378 Enoyl-CoA hydratase/isomerase HML84_21950 PF00158 Sigma-54 interaction domain HML84_21950 PF02954 Bacterial regulatory protein, Fis family HML84_21950 PF01590 GAF domain HML84_21955 PF00158 Sigma-54 interaction domain HML84_21970 PF02321 Outer membrane efflux protein HML84_21980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HML84_21980 PF00529 HlyD membrane-fusion protein of T1SS HML84_22025 PF00005 ABC transporter HML84_22025 PF12399 Branched-chain amino acid ATP-binding cassette transporter