locus-tag class description P40_00005 PF00308 Bacterial dnaA protein P40_00005 PF08299 Bacterial dnaA protein helix-turn-helix P40_00005 PF11638 DnaA N-terminal domain P40_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain P40_00010 PF02767 DNA polymerase III beta subunit, central domain P40_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain P40_00015 PF02463 RecF/RecN/SMC N terminal domain P40_00020 PF00204 DNA gyrase B P40_00020 PF00986 DNA gyrase B subunit, carboxyl terminus P40_00020 PF18053 DNA gyrase B subunit insert domain P40_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_00020 PF01751 Toprim domain P40_00025 PF00816 H-NS histone family P40_00055 PF13458 Periplasmic binding protein P40_00065 PF00005 ABC transporter P40_00070 PF05746 DALR anticodon binding domain P40_00070 PF02092 Glycyl-tRNA synthetase beta subunit P40_00075 PF02091 Glycyl-tRNA synthetase alpha subunit P40_00080 PF03352 Methyladenine glycosylase P40_00085 PF00117 Glutamine amidotransferase class-I P40_00085 PF00958 GMP synthase C terminal domain P40_00105 PF07690 Major Facilitator Superfamily P40_00110 PF18030 RimK PreATP-grasp domain P40_00110 PF08443 RimK-like ATP-grasp domain P40_00115 PF01557 Fumarylacetoacetate (FAA) hydrolase family P40_00120 PF01565 FAD binding domain P40_00120 PF02913 FAD linked oxidases, C-terminal domain P40_00125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain P40_00125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain P40_00125 PF01842 ACT domain P40_00150 PF00999 Sodium/hydrogen exchanger family P40_00150 PF02254 TrkA-N domain P40_00175 PF01467 Cytidylyltransferase-like P40_00190 PF05199 GMC oxidoreductase P40_00190 PF00732 GMC oxidoreductase P40_00200 PF00171 Aldehyde dehydrogenase family P40_00205 PF00440 Bacterial regulatory proteins, tetR family P40_00205 PF02909 Tetracyclin repressor-like, C-terminal domain P40_00210 PF09339 IclR helix-turn-helix domain P40_00210 PF01614 Bacterial transcriptional regulator P40_00225 PF01144 Coenzyme A transferase P40_00230 PF01144 Coenzyme A transferase P40_00240 PF00561 alpha/beta hydrolase fold P40_00245 PF01145 SPFH domain / Band 7 family P40_00255 PF04452 RNA methyltransferase P40_00260 PF01425 Amidase P40_00270 PF04143 Sulphur transport P40_00280 PF07690 Major Facilitator Superfamily P40_00285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_00285 PF03466 LysR substrate binding domain P40_00290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily P40_00295 PF05872 Bacterial protein of unknown function (DUF853) P40_00300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase P40_00310 PF12706 Beta-lactamase superfamily domain P40_00320 PF01339 CheB methylesterase P40_00320 PF00072 Response regulator receiver domain P40_00325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_00325 PF01627 Hpt domain P40_00325 PF01584 CheW-like domain P40_00325 PF00072 Response regulator receiver domain P40_00330 PF01739 CheR methyltransferase, SAM binding domain P40_00330 PF03705 CheR methyltransferase, all-alpha domain P40_00335 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term P40_00335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain P40_00340 PF01584 CheW-like domain P40_00345 PF00072 Response regulator receiver domain P40_00350 PF00072 Response regulator receiver domain P40_00355 PF02951 Prokaryotic glutathione synthetase, N-terminal domain P40_00355 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain P40_00365 PF02622 Uncharacterized ACR, COG1678 P40_00370 PF03652 Holliday junction resolvase P40_00380 PF00156 Phosphoribosyl transferase domain P40_00385 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain P40_00385 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain P40_00390 PF01979 Amidohydrolase family P40_00395 PF13098 Thioredoxin-like domain P40_00400 PF08534 Redoxin P40_00405 PF00486 Transcriptional regulatory protein, C terminal P40_00405 PF00072 Response regulator receiver domain P40_00410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_00410 PF08521 Two-component sensor kinase N-terminal P40_00410 PF00512 His Kinase A (phospho-acceptor) domain P40_00420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_00420 PF03466 LysR substrate binding domain P40_00425 PF02525 Flavodoxin-like fold P40_00430 PF13409 Glutathione S-transferase, N-terminal domain P40_00435 PF02678 Pirin P40_00435 PF05726 Pirin C-terminal cupin domain P40_00440 PF00437 Type II/IV secretion system protein P40_00445 PF00437 Type II/IV secretion system protein P40_00450 PF01168 Alanine racemase, N-terminal domain P40_00455 PF03807 NADP oxidoreductase coenzyme F420-dependent P40_00455 PF14748 Pyrroline-5-carboxylate reductase dimerisation P40_00465 PF02325 YGGT family P40_00470 PF00682 HMGL-like P40_00500 PF02770 Acyl-CoA dehydrogenase, middle domain P40_00500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_00500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_00520 PF00487 Fatty acid desaturase P40_00535 PF00875 DNA photolyase P40_00535 PF03441 FAD binding domain of DNA photolyase P40_00580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_00580 PF00672 HAMP domain P40_00580 PF00512 His Kinase A (phospho-acceptor) domain P40_00585 PF00072 Response regulator receiver domain P40_00585 PF00486 Transcriptional regulatory protein, C terminal P40_00590 PF00583 Acetyltransferase (GNAT) family P40_00600 PF00378 Enoyl-CoA hydratase/isomerase P40_00605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_00605 PF02770 Acyl-CoA dehydrogenase, middle domain P40_00605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_00610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_00610 PF02770 Acyl-CoA dehydrogenase, middle domain P40_00610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_00615 PF02803 Thiolase, C-terminal domain P40_00615 PF00108 Thiolase, N-terminal domain P40_00625 PF04909 Amidohydrolase P40_00630 PF02386 Cation transport protein P40_00635 PF02254 TrkA-N domain P40_00635 PF02080 TrkA-C domain P40_00640 PF01189 16S rRNA methyltransferase RsmB/F P40_00640 PF01029 NusB family P40_00645 PF02911 Formyl transferase, C-terminal domain P40_00645 PF00551 Formyl transferase P40_00650 PF01327 Polypeptide deformylase P40_00660 PF17782 DprA winged helix domain P40_00660 PF02481 DNA recombination-mediator protein A P40_00665 PF01300 Telomere recombination P40_00670 PF01218 Coproporphyrinogen III oxidase P40_00675 PF18317 Shikimate 5'-dehydrogenase C-terminal domain P40_00675 PF01488 Shikimate / quinate 5-dehydrogenase P40_00675 PF08501 Shikimate dehydrogenase substrate binding domain P40_00685 PF00132 Bacterial transferase hexapeptide (six repeats) P40_00690 PF01432 Peptidase family M3 P40_00700 PF00593 TonB dependent receptor P40_00700 PF07715 TonB-dependent Receptor Plug Domain P40_00705 PF00230 Major intrinsic protein P40_00735 PF00175 Oxidoreductase NAD-binding domain P40_00735 PF00970 Oxidoreductase FAD-binding domain P40_00755 PF00270 DEAD/DEAH box helicase P40_00755 PF00271 Helicase conserved C-terminal domain P40_00755 PF17191 RecG wedge domain P40_00760 PF03466 LysR substrate binding domain P40_00760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_00770 PF00731 AIR carboxylase P40_00775 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain P40_00775 PF02222 ATP-grasp domain P40_00780 PF00135 Carboxylesterase family P40_00795 PF01042 Endoribonuclease L-PSP P40_00800 PF02810 SEC-C motif P40_00805 PF01548 Transposase P40_00805 PF02371 Transposase IS116/IS110/IS902 family P40_00810 PF13291 ACT domain P40_00810 PF04607 Region found in RelA / SpoT proteins P40_00810 PF02824 TGS domain P40_00815 PF01192 RNA polymerase Rpb6 P40_00820 PF00625 Guanylate kinase P40_00825 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family P40_00830 PF00392 Bacterial regulatory proteins, gntR family P40_00830 PF00155 Aminotransferase class I and II P40_00835 PF00368 Hydroxymethylglutaryl-coenzyme A reductase P40_00840 PF02515 CoA-transferase family III P40_00845 PF03480 Bacterial extracellular solute-binding protein, family 7 P40_00865 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component P40_00885 PF03755 YicC-like family, N-terminal region P40_00885 PF08340 Domain of unknown function (DUF1732) P40_00890 PF03725 3' exoribonuclease family, domain 2 P40_00890 PF01138 3' exoribonuclease family, domain 1 P40_00895 PF00156 Phosphoribosyl transferase domain P40_00905 PF00440 Bacterial regulatory proteins, tetR family P40_00910 PF00696 Amino acid kinase family P40_00920 PF00692 dUTPase P40_00925 PF04127 DNA / pantothenate metabolism flavoprotein P40_00925 PF02441 Flavoprotein P40_00930 PF04002 RadC-like JAB domain P40_00935 PF00830 Ribosomal L28 family P40_00940 PF00471 Ribosomal protein L33 P40_00965 PF00263 Bacterial type II and III secretion system protein P40_00965 PF04972 BON domain P40_00965 PF13629 Pilus formation protein N terminal region P40_00975 PF00437 Type II/IV secretion system protein P40_01010 PF01614 Bacterial transcriptional regulator P40_01010 PF09339 IclR helix-turn-helix domain P40_01020 PF02515 CoA-transferase family III P40_01035 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component P40_01040 PF09957 Bacterial antitoxin of type II TA system, VapB P40_01055 PF01968 Hydantoinase/oxoprolinase P40_01055 PF05378 Hydantoinase/oxoprolinase N-terminal region P40_01065 PF06827 Zinc finger found in FPG and IleRS P40_01065 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain P40_01065 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain P40_01085 PF00873 AcrB/AcrD/AcrF family P40_01090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion P40_01095 PF04055 Radical SAM superfamily P40_01095 PF06969 HemN C-terminal domain P40_01100 PF01725 Ham1 family P40_01105 PF00561 alpha/beta hydrolase fold P40_01105 PF07021 Methionine biosynthesis protein MetW P40_01110 PF00561 alpha/beta hydrolase fold P40_01125 PF02390 Putative methyltransferase P40_01130 PF05690 Thiazole biosynthesis protein ThiG P40_01135 PF05690 Thiazole biosynthesis protein ThiG P40_01135 PF02597 ThiS family P40_01140 PF04241 Protein of unknown function (DUF423) P40_01145 PF00140 Sigma-70 factor, region 1.2 P40_01145 PF04542 Sigma-70 region 2 P40_01145 PF04545 Sigma-70, region 4 P40_01150 PF18075 FtsX extracellular domain P40_01155 PF00005 ABC transporter P40_01160 PF02881 SRP54-type protein, helical bundle domain P40_01160 PF00448 SRP54-type protein, GTPase domain P40_01165 PF05193 Peptidase M16 inactive domain P40_01165 PF00675 Insulinase (Peptidase family M16) P40_01180 PF01699 Sodium/calcium exchanger protein P40_01195 PF06865 Pyrimidine/purine nucleoside phosphorylase P40_01205 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin P40_01210 PF07969 Amidohydrolase family P40_01215 PF01554 MatE P40_01220 PF07687 Peptidase dimerisation domain P40_01220 PF01546 Peptidase family M20/M25/M40 P40_01230 PF00756 Putative esterase P40_01235 PF00107 Zinc-binding dehydrogenase P40_01235 PF08240 Alcohol dehydrogenase GroES-like domain P40_01240 PF03466 LysR substrate binding domain P40_01240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_01250 PF02219 Methylenetetrahydrofolate reductase P40_01255 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain P40_01255 PF05221 S-adenosyl-L-homocysteine hydrolase P40_01260 PF02773 S-adenosylmethionine synthetase, C-terminal domain P40_01260 PF02772 S-adenosylmethionine synthetase, central domain P40_01260 PF00438 S-adenosylmethionine synthetase, N-terminal domain P40_01265 PF01022 Bacterial regulatory protein, arsR family P40_01275 PF02779 Transketolase, pyrimidine binding domain P40_01275 PF02780 Transketolase, C-terminal domain P40_01275 PF00456 Transketolase, thiamine diphosphate binding domain P40_01280 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain P40_01280 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain P40_01285 PF00162 Phosphoglycerate kinase P40_01290 PF01116 Fructose-bisphosphate aldolase class-II P40_01320 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) P40_01325 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) P40_01330 PF13205 Bacterial Ig-like domain P40_01335 PF00585 C-terminal regulatory domain of Threonine dehydratase P40_01335 PF00291 Pyridoxal-phosphate dependent enzyme P40_01340 PF01812 5-formyltetrahydrofolate cyclo-ligase family P40_01345 PF05164 Cell division protein ZapA P40_01355 PF03695 Uncharacterised protein family (UPF0149) P40_01360 PF05195 Aminopeptidase P, N-terminal domain P40_01360 PF00557 Metallopeptidase family M24 P40_01365 PF01494 FAD binding domain P40_01370 PF01494 FAD binding domain P40_01380 PF00528 Binding-protein-dependent transport system inner membrane component P40_01385 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) P40_01390 PF13205 Bacterial Ig-like domain P40_01395 PF08669 Glycine cleavage T-protein C-terminal barrel domain P40_01395 PF01571 Aminomethyltransferase folate-binding domain P40_01400 PF01597 Glycine cleavage H-protein P40_01405 PF02347 Glycine cleavage system P-protein P40_01410 PF02347 Glycine cleavage system P-protein P40_01460 PF00107 Zinc-binding dehydrogenase P40_01460 PF08240 Alcohol dehydrogenase GroES-like domain P40_01465 PF14552 Tautomerase enzyme P40_01490 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH P40_01510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily P40_01520 PF01568 Molydopterin dinucleotide binding domain P40_01520 PF00384 Molybdopterin oxidoreductase P40_01530 PF00593 TonB dependent receptor P40_01530 PF07715 TonB-dependent Receptor Plug Domain P40_01545 PF18381 YcaO cyclodehydratase C-terminal domain P40_01545 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding P40_01565 PF00043 Glutathione S-transferase, C-terminal domain P40_01565 PF02798 Glutathione S-transferase, N-terminal domain P40_01575 PF08659 KR domain P40_01575 PF00698 Acyl transferase domain P40_01575 PF14765 Polyketide synthase dehydratase P40_01575 PF16197 Ketoacyl-synthetase C-terminal extension P40_01575 PF08240 Alcohol dehydrogenase GroES-like domain P40_01575 PF00107 Zinc-binding dehydrogenase P40_01575 PF00109 Beta-ketoacyl synthase, N-terminal domain P40_01575 PF00550 Phosphopantetheine attachment site P40_01575 PF02801 Beta-ketoacyl synthase, C-terminal domain P40_01590 PF08241 Methyltransferase domain P40_01625 PF13673 Acetyltransferase (GNAT) domain P40_01630 PF02798 Glutathione S-transferase, N-terminal domain P40_01675 PF02515 CoA-transferase family III P40_01700 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component P40_01705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_01705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_01705 PF02770 Acyl-CoA dehydrogenase, middle domain P40_01715 PF04972 BON domain P40_01715 PF01476 LysM domain P40_01730 PF02463 RecF/RecN/SMC N terminal domain P40_01735 PF06940 Domain of unknown function (DUF1287) P40_01740 PF01323 DSBA-like thioredoxin domain P40_01745 PF02798 Glutathione S-transferase, N-terminal domain P40_01745 PF00043 Glutathione S-transferase, C-terminal domain P40_01775 PF03358 NADPH-dependent FMN reductase P40_01785 PF00561 alpha/beta hydrolase fold P40_01790 PF03831 PhnA domain P40_01790 PF08274 PhnA Zinc-Ribbon P40_01795 PF02667 Short chain fatty acid transporter P40_01805 PF00248 Aldo/keto reductase family P40_01810 PF13091 PLD-like domain P40_01815 PF01139 tRNA-splicing ligase RtcB P40_01830 PF16868 NMT1-like family P40_01840 PF01614 Bacterial transcriptional regulator P40_01840 PF09339 IclR helix-turn-helix domain P40_01850 PF03401 Tripartite tricarboxylate transporter family receptor P40_01865 PF01970 Tripartite tricarboxylate transporter TctA family P40_01870 PF02515 CoA-transferase family III P40_01880 PF04286 Protein of unknown function (DUF445) P40_01890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily P40_01895 PF01425 Amidase P40_01910 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component P40_01920 PF01738 Dienelactone hydrolase family P40_01925 PF00132 Bacterial transferase hexapeptide (six repeats) P40_01935 PF08918 PhoQ Sensor P40_01935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_01940 PF00486 Transcriptional regulatory protein, C terminal P40_01940 PF00072 Response regulator receiver domain P40_01955 PF00501 AMP-binding enzyme P40_01955 PF13193 AMP-binding enzyme C-terminal domain P40_01965 PF04381 Putative exonuclease, RdgC P40_01975 PF03795 YCII-related domain P40_01980 PF04542 Sigma-70 region 2 P40_01980 PF08281 Sigma-70, region 4 P40_01995 PF00107 Zinc-binding dehydrogenase P40_01995 PF08240 Alcohol dehydrogenase GroES-like domain P40_02005 PF01925 Sulfite exporter TauE/SafE P40_02015 PF04228 Putative neutral zinc metallopeptidase P40_02020 PF00873 AcrB/AcrD/AcrF family P40_02035 PF03793 PASTA domain P40_02035 PF00069 Protein kinase domain P40_02040 PF01226 Formate/nitrite transporter P40_02045 PF09335 SNARE associated Golgi protein P40_02050 PF00043 Glutathione S-transferase, C-terminal domain P40_02050 PF02798 Glutathione S-transferase, N-terminal domain P40_02055 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain P40_02055 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain P40_02060 PF03466 LysR substrate binding domain P40_02060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_02065 PF02805 Metal binding domain of Ada P40_02065 PF06029 AlkA N-terminal domain P40_02065 PF00730 HhH-GPD superfamily base excision DNA repair protein P40_02065 PF12833 Helix-turn-helix domain P40_02070 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain P40_02070 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain P40_02090 PF00271 Helicase conserved C-terminal domain P40_02090 PF00270 DEAD/DEAH box helicase P40_02095 PF10672 S-adenosylmethionine-dependent methyltransferase P40_02095 PF17785 PUA-like domain P40_02115 PF00398 Ribosomal RNA adenine dimethylase P40_02120 PF00403 Heavy-metal-associated domain P40_02140 PF00293 NUDIX domain P40_02145 PF00391 PEP-utilising enzyme, mobile domain P40_02145 PF01590 GAF domain P40_02145 PF02896 PEP-utilising enzyme, TIM barrel domain P40_02145 PF05524 PEP-utilising enzyme, N-terminal P40_02155 PF01925 Sulfite exporter TauE/SafE P40_02160 PF01790 Prolipoprotein diacylglyceryl transferase P40_02165 PF00303 Thymidylate synthase P40_02170 PF00186 Dihydrofolate reductase P40_02210 PF00005 ABC transporter P40_02210 PF12848 ABC transporter P40_02220 PF02694 Uncharacterised BCR, YnfA/UPF0060 family P40_02230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_02230 PF02770 Acyl-CoA dehydrogenase, middle domain P40_02230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_02235 PF13193 AMP-binding enzyme C-terminal domain P40_02235 PF00501 AMP-binding enzyme P40_02240 PF03480 Bacterial extracellular solute-binding protein, family 7 P40_02245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_02245 PF02770 Acyl-CoA dehydrogenase, middle domain P40_02245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_02260 PF06968 Biotin and Thiamin Synthesis associated domain P40_02260 PF00202 Aminotransferase class-III P40_02260 PF04055 Radical SAM superfamily P40_02265 PF01039 Carboxyl transferase domain P40_02270 PF02785 Biotin carboxylase C-terminal domain P40_02270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain P40_02270 PF00289 Biotin carboxylase, N-terminal domain P40_02275 PF00378 Enoyl-CoA hydratase/isomerase P40_02280 PF00501 AMP-binding enzyme P40_02280 PF13193 AMP-binding enzyme C-terminal domain P40_02285 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase P40_02285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase P40_02290 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ P40_02305 PF04172 LrgB-like family P40_02315 PF02600 Disulfide bond formation protein DsbB P40_02320 PF04262 Glutamate-cysteine ligase P40_02325 PF16921 Tex protein YqgF-like domain P40_02325 PF09371 Tex-like protein N-terminal domain P40_02325 PF00575 S1 RNA binding domain P40_02325 PF17674 HHH domain P40_02330 PF00072 Response regulator receiver domain P40_02335 PF00072 Response regulator receiver domain P40_02335 PF00486 Transcriptional regulatory protein, C terminal P40_02340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_02340 PF00672 HAMP domain P40_02340 PF00512 His Kinase A (phospho-acceptor) domain P40_02345 PF07690 Major Facilitator Superfamily P40_02350 PF00920 Dehydratase family P40_02360 PF02627 Carboxymuconolactone decarboxylase family P40_02365 PF00155 Aminotransferase class I and II P40_02365 PF00392 Bacterial regulatory proteins, gntR family P40_02375 PF07995 Glucose / Sorbosone dehydrogenase P40_02380 PF13417 Glutathione S-transferase, N-terminal domain P40_02380 PF14497 Glutathione S-transferase, C-terminal domain P40_02400 PF00440 Bacterial regulatory proteins, tetR family P40_02420 PF08281 Sigma-70, region 4 P40_02420 PF04542 Sigma-70 region 2 P40_02425 PF16220 Domain of unknown function (DUF4880) P40_02425 PF04773 FecR protein P40_02430 PF00593 TonB dependent receptor P40_02430 PF07715 TonB-dependent Receptor Plug Domain P40_02435 PF01011 PQQ enzyme repeat P40_02440 PF13406 Transglycosylase SLT domain P40_02445 PF03631 Virulence factor BrkB P40_02450 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_02455 PF13193 AMP-binding enzyme C-terminal domain P40_02455 PF00501 AMP-binding enzyme P40_02460 PF13193 AMP-binding enzyme C-terminal domain P40_02460 PF00501 AMP-binding enzyme P40_02465 PF00171 Aldehyde dehydrogenase family P40_02480 PF02975 Methylamine dehydrogenase, L chain P40_02485 PF00578 AhpC/TSA family P40_02490 PF07291 Methylamine utilisation protein MauE P40_02495 PF06433 Methylamine dehydrogenase heavy chain (MADH) P40_02510 PF12833 Helix-turn-helix domain P40_02515 PF01293 Phosphoenolpyruvate carboxykinase P40_02520 PF01430 Hsp33 protein P40_02525 PF01479 S4 domain P40_02530 PF13419 Haloacid dehalogenase-like hydrolase P40_02535 PF00155 Aminotransferase class I and II P40_02535 PF00392 Bacterial regulatory proteins, gntR family P40_02545 PF00293 NUDIX domain P40_02550 PF00459 Inositol monophosphatase family P40_02565 PF00027 Cyclic nucleotide-binding domain P40_02565 PF13545 Crp-like helix-turn-helix domain P40_02580 PF01047 MarR family P40_02590 PF13193 AMP-binding enzyme C-terminal domain P40_02590 PF00501 AMP-binding enzyme P40_02595 PF12911 N-terminal TM domain of oligopeptide transport permease C P40_02595 PF00528 Binding-protein-dependent transport system inner membrane component P40_02600 PF00528 Binding-protein-dependent transport system inner membrane component P40_02605 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle P40_02610 PF00005 ABC transporter P40_02610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region P40_02615 PF00005 ABC transporter P40_02615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region P40_02625 PF00682 HMGL-like P40_02625 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain P40_02625 PF00364 Biotin-requiring enzyme P40_02625 PF02785 Biotin carboxylase C-terminal domain P40_02625 PF00289 Biotin carboxylase, N-terminal domain P40_02625 PF02436 Conserved carboxylase domain P40_02630 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain P40_02645 PF00440 Bacterial regulatory proteins, tetR family P40_02645 PF02909 Tetracyclin repressor-like, C-terminal domain P40_02650 PF00106 short chain dehydrogenase P40_02660 PF00743 Flavin-binding monooxygenase-like P40_02685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_02685 PF02770 Acyl-CoA dehydrogenase, middle domain P40_02685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_02695 PF00743 Flavin-binding monooxygenase-like P40_02720 PF00475 Imidazoleglycerol-phosphate dehydratase P40_02725 PF00117 Glutamine amidotransferase class-I P40_02730 PF00977 Histidine biosynthesis protein P40_02735 PF00977 Histidine biosynthesis protein P40_02740 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 P40_02745 PF00472 RF-1 domain P40_02755 PF01758 Sodium Bile acid symporter family P40_02760 PF07690 Major Facilitator Superfamily P40_02770 PF04324 BFD-like [2Fe-2S] binding domain P40_02770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain P40_02770 PF01568 Molydopterin dinucleotide binding domain P40_02770 PF00384 Molybdopterin oxidoreductase P40_02775 PF12804 MobA-like NTP transferase domain P40_02780 PF06463 Molybdenum Cofactor Synthesis C P40_02780 PF04055 Radical SAM superfamily P40_02790 PF02391 MoaE protein P40_02795 PF00994 Probable molybdopterin binding domain P40_02795 PF01967 MoaC family P40_02800 PF03454 MoeA C-terminal region (domain IV) P40_02800 PF00994 Probable molybdopterin binding domain P40_02800 PF03453 MoeA N-terminal region (domain I and II) P40_02805 PF03572 Peptidase family S41 P40_02805 PF13180 PDZ domain P40_02810 PF01551 Peptidase family M23 P40_02815 PF00581 Rhodanese-like domain P40_02820 PF00462 Glutaredoxin P40_02825 PF02556 Preprotein translocase subunit SecB P40_02830 PF00588 SpoU rRNA Methylase family P40_02835 PF05532 CsbD-like P40_02855 PF08443 RimK-like ATP-grasp domain P40_02855 PF18030 RimK PreATP-grasp domain P40_02860 PF00884 Sulfatase P40_02860 PF11893 Domain of unknown function (DUF3413) P40_02875 PF03951 Glutamine synthetase, beta-Grasp domain P40_02875 PF00120 Glutamine synthetase, catalytic domain P40_02890 PF00989 PAS fold P40_02890 PF00512 His Kinase A (phospho-acceptor) domain P40_02890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_02895 PF00158 Sigma-54 interaction domain P40_02895 PF00072 Response regulator receiver domain P40_02895 PF02954 Bacterial regulatory protein, Fis family P40_02900 PF00561 alpha/beta hydrolase fold P40_02905 PF02580 D-Tyr-tRNA(Tyr) deacylase P40_02920 PF11647 Membrane Localization Domain P40_02920 PF11713 Peptidase C80 family P40_02920 PF07634 RtxA repeat P40_02920 PF16671 Actin cross-linking domain P40_02920 PF12146 Serine aminopeptidase, S33 P40_02925 PF00902 Sec-independent protein translocase protein (TatC) P40_02930 PF02416 mttA/Hcf106 family P40_02935 PF02416 mttA/Hcf106 family P40_02940 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase P40_02945 PF03109 ABC1 family P40_02955 PF01209 ubiE/COQ5 methyltransferase family P40_02965 PF00583 Acetyltransferase (GNAT) family P40_02965 PF00696 Amino acid kinase family P40_02970 PF01384 Phosphate transporter family P40_02975 PF01865 Protein of unknown function DUF47 P40_02980 PF00437 Type II/IV secretion system protein P40_02985 PF08335 GlnD PII-uridylyltransferase P40_02985 PF03710 Glutamate-ammonia ligase adenylyltransferase P40_02990 PF01063 Amino-transferase class IV P40_02995 PF01075 Glycosyltransferase family 9 (heptosyltransferase) P40_03005 PF01075 Glycosyltransferase family 9 (heptosyltransferase) P40_03010 PF00534 Glycosyl transferases group 1 P40_03010 PF13439 Glycosyltransferase Family 4 P40_03045 PF03279 Bacterial lipid A biosynthesis acyltransferase P40_03055 PF01467 Cytidylyltransferase-like P40_03055 PF00294 pfkB family carbohydrate kinase P40_03060 PF12833 Helix-turn-helix domain P40_03065 PF00743 Flavin-binding monooxygenase-like P40_03070 PF00248 Aldo/keto reductase family P40_03075 PF01266 FAD dependent oxidoreductase P40_03080 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) P40_03085 PF02321 Outer membrane efflux protein P40_03090 PF13667 ThiC-associated domain P40_03090 PF01964 Radical SAM ThiC family P40_03095 PF00293 NUDIX domain P40_03105 PF00149 Calcineurin-like phosphoesterase P40_03130 PF08659 KR domain P40_03130 PF00550 Phosphopantetheine attachment site P40_03130 PF14765 Polyketide synthase dehydratase P40_03130 PF02801 Beta-ketoacyl synthase, C-terminal domain P40_03130 PF00109 Beta-ketoacyl synthase, N-terminal domain P40_03130 PF08240 Alcohol dehydrogenase GroES-like domain P40_03130 PF00698 Acyl transferase domain P40_03130 PF16197 Ketoacyl-synthetase C-terminal extension P40_03135 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component P40_03145 PF03480 Bacterial extracellular solute-binding protein, family 7 P40_03150 PF00501 AMP-binding enzyme P40_03150 PF13193 AMP-binding enzyme C-terminal domain P40_03155 PF00108 Thiolase, N-terminal domain P40_03155 PF02803 Thiolase, C-terminal domain P40_03160 PF00196 Bacterial regulatory proteins, luxR family P40_03160 PF13426 PAS domain P40_03165 PF07237 Protein of unknown function (DUF1428) P40_03170 PF02690 Na+/Pi-cotransporter P40_03175 PF05728 Uncharacterised protein family (UPF0227) P40_03180 PF00986 DNA gyrase B subunit, carboxyl terminus P40_03180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_03180 PF00204 DNA gyrase B P40_03180 PF01751 Toprim domain P40_03185 PF03989 DNA gyrase C-terminal domain, beta-propeller P40_03185 PF00521 DNA gyrase/topoisomerase IV, subunit A P40_03190 PF01553 Acyltransferase P40_03200 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) P40_03210 PF01804 Penicillin amidase P40_03215 PF00701 Dihydrodipicolinate synthetase family P40_03230 PF00561 alpha/beta hydrolase fold P40_03235 PF00152 tRNA synthetases class II (D, K and N) P40_03240 PF08207 Elongation factor P (EF-P) KOW-like domain P40_03240 PF09285 Elongation factor P, C-terminal P40_03240 PF01132 Elongation factor P (EF-P) OB domain P40_03245 PF04055 Radical SAM superfamily P40_03255 PF03707 Bacterial signalling protein N terminal repeat P40_03255 PF00563 EAL domain P40_03255 PF00990 Diguanylate cyclase, GGDEF domain P40_03275 PF02515 CoA-transferase family III P40_03280 PF00378 Enoyl-CoA hydratase/isomerase P40_03290 PF00158 Sigma-54 interaction domain P40_03290 PF02954 Bacterial regulatory protein, Fis family P40_03290 PF13426 PAS domain P40_03305 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component P40_03310 PF00501 AMP-binding enzyme P40_03310 PF13193 AMP-binding enzyme C-terminal domain P40_03315 PF03466 LysR substrate binding domain P40_03315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_03320 PF00248 Aldo/keto reductase family P40_03325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_03325 PF03466 LysR substrate binding domain P40_03330 PF00378 Enoyl-CoA hydratase/isomerase P40_03350 PF18324 Hypothetical protein TT1725 P40_03350 PF00180 Isocitrate/isopropylmalate dehydrogenase P40_03355 PF00724 NADH:flavin oxidoreductase / NADH oxidase family P40_03360 PF06719 AraC-type transcriptional regulator N-terminus P40_03360 PF12833 Helix-turn-helix domain P40_03365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion P40_03365 PF00529 HlyD membrane-fusion protein of T1SS P40_03370 PF00873 AcrB/AcrD/AcrF family P40_03375 PF02321 Outer membrane efflux protein P40_03380 PF01062 Bestrophin, RFP-TM, chloride channel P40_03385 PF01613 Flavin reductase like domain P40_03390 PF04954 Siderophore-interacting protein P40_03390 PF08021 Siderophore-interacting FAD-binding domain P40_03395 PF01047 MarR family P40_03400 PF00487 Fatty acid desaturase P40_03405 PF12833 Helix-turn-helix domain P40_03405 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term P40_03415 PF00762 Ferrochelatase P40_03420 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region P40_03420 PF01243 Pyridoxamine 5'-phosphate oxidase P40_03435 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system P40_03450 PF00005 ABC transporter P40_03455 PF12399 Branched-chain amino acid ATP-binding cassette transporter P40_03455 PF00005 ABC transporter P40_03465 PF02653 Branched-chain amino acid transport system / permease component P40_03475 PF07729 FCD domain P40_03475 PF00392 Bacterial regulatory proteins, gntR family P40_03480 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain P40_03480 PF02785 Biotin carboxylase C-terminal domain P40_03480 PF00289 Biotin carboxylase, N-terminal domain P40_03485 PF01425 Amidase P40_03490 PF03466 LysR substrate binding domain P40_03490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_03495 PF09663 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) P40_03500 PF02608 ABC transporter substrate-binding protein PnrA-like P40_03515 PF00795 Carbon-nitrogen hydrolase P40_03520 PF00857 Isochorismatase family P40_03530 PF00857 Isochorismatase family P40_03540 PF00885 6,7-dimethyl-8-ribityllumazine synthase P40_03555 PF04362 Bacterial Fe(2+) trafficking P40_03560 PF14815 NUDIX domain P40_03560 PF00730 HhH-GPD superfamily base excision DNA repair protein P40_03560 PF00633 Helix-hairpin-helix motif P40_03560 PF10576 Iron-sulfur binding domain of endonuclease III P40_03570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_03570 PF00512 His Kinase A (phospho-acceptor) domain P40_03575 PF02666 Phosphatidylserine decarboxylase P40_03580 PF00581 Rhodanese-like domain P40_03585 PF03193 RsgA GTPase P40_03590 PF00929 Exonuclease P40_03600 PF01322 Cytochrome C' P40_03605 PF08331 Domain of unknown function (DUF1730) P40_03610 PF01256 Carbohydrate kinase P40_03610 PF03853 YjeF-related protein N-terminus P40_03615 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE P40_03620 PF01520 N-acetylmuramoyl-L-alanine amidase P40_03620 PF11741 AMIN domain P40_03625 PF08676 MutL C terminal dimerisation domain P40_03625 PF01119 DNA mismatch repair protein, C-terminal domain P40_03635 PF17209 Hfq protein P40_03640 PF01926 50S ribosome-binding GTPase P40_03640 PF13167 GTP-binding GTPase N-terminal P40_03640 PF16360 GTP-binding GTPase Middle Region P40_03645 PF01145 SPFH domain / Band 7 family P40_03645 PF12221 Bacterial membrane protein N terminal P40_03650 PF01145 SPFH domain / Band 7 family P40_03660 PF13393 Histidyl-tRNA synthetase P40_03665 PF00709 Adenylosuccinate synthetase P40_03680 PF00245 Alkaline phosphatase P40_03685 PF00245 Alkaline phosphatase P40_03700 PF09423 PhoD-like phosphatase P40_03700 PF16655 PhoD-like phosphatase, N-terminal domain P40_03710 PF17876 Cold shock domain P40_03710 PF08461 Ribonuclease R winged-helix domain P40_03710 PF08206 Ribonuclease B OB domain P40_03710 PF00575 S1 RNA binding domain P40_03710 PF00773 RNB domain P40_03715 PF08032 RNA 2'-O ribose methyltransferase substrate binding P40_03715 PF00588 SpoU rRNA Methylase family P40_03720 PF01250 Ribosomal protein S6 P40_03730 PF01084 Ribosomal protein S18 P40_03735 PF03948 Ribosomal protein L9, C-terminal domain P40_03735 PF01281 Ribosomal protein L9, N-terminal domain P40_03740 PF00772 DnaB-like helicase N terminal domain P40_03740 PF03796 DnaB-like helicase C terminal domain P40_03745 PF00842 Alanine racemase, C-terminal domain P40_03745 PF01168 Alanine racemase, N-terminal domain P40_03750 PF18073 Rubredoxin metal binding domain P40_03755 PF02080 TrkA-C domain P40_03755 PF02254 TrkA-N domain P40_03760 PF02386 Cation transport protein P40_03765 PF03929 PepSY-associated TM region P40_03770 PF00593 TonB dependent receptor P40_03770 PF07715 TonB-dependent Receptor Plug Domain P40_03780 PF00403 Heavy-metal-associated domain P40_03780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain P40_03780 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_03785 PF13847 Methyltransferase domain P40_03800 PF07681 DoxX P40_03810 PF04542 Sigma-70 region 2 P40_03810 PF08281 Sigma-70, region 4 P40_03815 PF00005 ABC transporter P40_03815 PF12848 ABC transporter P40_03820 PF02203 Tar ligand binding domain homologue P40_03820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain P40_03820 PF00672 HAMP domain P40_03825 PF00464 Serine hydroxymethyltransferase P40_03835 PF03477 ATP cone domain P40_03840 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region P40_03840 PF01872 RibD C-terminal domain P40_03850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily P40_03860 PF00440 Bacterial regulatory proteins, tetR family P40_03870 PF05138 Phenylacetic acid catabolic protein P40_03875 PF06243 Phenylacetic acid degradation B P40_03880 PF05138 Phenylacetic acid catabolic protein P40_03885 PF01883 Iron-sulfur cluster assembly protein P40_03890 PF00175 Oxidoreductase NAD-binding domain P40_03890 PF00970 Oxidoreductase FAD-binding domain P40_03890 PF00111 2Fe-2S iron-sulfur cluster binding domain P40_03895 PF00171 Aldehyde dehydrogenase family P40_03895 PF01575 MaoC like domain P40_03915 PF01844 HNH endonuclease P40_03920 PF07519 Tannase and feruloyl esterase P40_03935 PF02872 5'-nucleotidase, C-terminal domain P40_03935 PF00149 Calcineurin-like phosphoesterase P40_03940 PF00583 Acetyltransferase (GNAT) family P40_03960 PF00005 ABC transporter P40_03965 PF00005 ABC transporter P40_03965 PF12399 Branched-chain amino acid ATP-binding cassette transporter P40_03970 PF11862 Domain of unknown function (DUF3382) P40_03970 PF02653 Branched-chain amino acid transport system / permease component P40_03975 PF02653 Branched-chain amino acid transport system / permease component P40_03985 PF07848 PaaX-like protein P40_03985 PF08223 PaaX-like protein C-terminal domain P40_03990 PF00378 Enoyl-CoA hydratase/isomerase P40_03995 PF03061 Thioesterase superfamily P40_04000 PF02803 Thiolase, C-terminal domain P40_04000 PF00108 Thiolase, N-terminal domain P40_04005 PF00501 AMP-binding enzyme P40_04005 PF14535 AMP-binding enzyme C-terminal domain P40_04015 PF00072 Response regulator receiver domain P40_04015 PF00196 Bacterial regulatory proteins, luxR family P40_04035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_04035 PF03466 LysR substrate binding domain P40_04040 PF02525 Flavodoxin-like fold P40_04050 PF00677 Lumazine binding domain P40_04055 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase P40_04055 PF00925 GTP cyclohydrolase II P40_04060 PF00885 6,7-dimethyl-8-ribityllumazine synthase P40_04065 PF01029 NusB family P40_04070 PF00586 AIR synthase related protein, N-terminal domain P40_04070 PF02769 AIR synthase related protein, C-terminal domain P40_04075 PF04608 Phosphatidylglycerophosphatase A P40_04080 PF02779 Transketolase, pyrimidine binding domain P40_04080 PF13292 1-deoxy-D-xylulose-5-phosphate synthase P40_04080 PF02780 Transketolase, C-terminal domain P40_04085 PF00348 Polyprenyl synthetase P40_04090 PF02609 Exonuclease VII small subunit P40_04105 PF00072 Response regulator receiver domain P40_04105 PF00486 Transcriptional regulatory protein, C terminal P40_04110 PF16970 Type-1 fimbrial protein, A P40_04115 PF02753 Pili assembly chaperone PapD, C-terminal domain P40_04115 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain P40_04120 PF13953 PapC C-terminal domain P40_04120 PF13954 PapC N-terminal domain P40_04120 PF00577 Outer membrane usher protein P40_04125 PF00419 Fimbrial protein P40_04135 PF09308 LuxQ, periplasmic P40_04135 PF00512 His Kinase A (phospho-acceptor) domain P40_04135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_04135 PF00072 Response regulator receiver domain P40_04145 PF00474 Sodium:solute symporter family P40_04165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_04165 PF00989 PAS fold P40_04165 PF18698 Histidine kinase sensor domain P40_04165 PF00672 HAMP domain P40_04165 PF00512 His Kinase A (phospho-acceptor) domain P40_04170 PF00072 Response regulator receiver domain P40_04170 PF00196 Bacterial regulatory proteins, luxR family P40_04175 PF06339 Ectoine synthase P40_04180 PF00202 Aminotransferase class-III P40_04185 PF00583 Acetyltransferase (GNAT) family P40_04190 PF01047 MarR family P40_04195 PF00474 Sodium:solute symporter family P40_04205 PF02649 Type I GTP cyclohydrolase folE2 P40_04220 PF07715 TonB-dependent Receptor Plug Domain P40_04220 PF00593 TonB dependent receptor P40_04235 PF01406 tRNA synthetases class I (C) catalytic domain P40_04235 PF09190 DALR domain P40_04240 PF01502 Phosphoribosyl-AMP cyclohydrolase P40_04245 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain P40_04245 PF02824 TGS domain P40_04245 PF03129 Anticodon binding domain P40_04245 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) P40_04255 PF01590 GAF domain P40_04255 PF00563 EAL domain P40_04255 PF00990 Diguanylate cyclase, GGDEF domain P40_04255 PF00360 Phytochrome region P40_04265 PF03466 LysR substrate binding domain P40_04265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_04275 PF01230 HIT domain P40_04290 PF02645 Uncharacterised protein, DegV family COG1307 P40_04295 PF04336 Acyl carrier protein phosphodiesterase P40_04310 PF00106 short chain dehydrogenase P40_04315 PF07859 alpha/beta hydrolase fold P40_04320 PF00743 Flavin-binding monooxygenase-like P40_04325 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term P40_04325 PF12833 Helix-turn-helix domain P40_04330 PF07859 alpha/beta hydrolase fold P40_04340 PF01661 Macro domain P40_04345 PF00857 Isochorismatase family P40_04350 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain P40_04350 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family P40_04355 PF02253 Phospholipase A1 P40_04360 PF03966 Trm112p-like protein P40_04365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_04365 PF02770 Acyl-CoA dehydrogenase, middle domain P40_04365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_04365 PF12806 Acetyl-CoA dehydrogenase C-terminal like P40_04370 PF04304 Protein of unknown function (DUF454) P40_04375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_04375 PF12806 Acetyl-CoA dehydrogenase C-terminal like P40_04375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_04375 PF02770 Acyl-CoA dehydrogenase, middle domain P40_04395 PF01618 MotA/TolQ/ExbB proton channel family P40_04400 PF02472 Biopolymer transport protein ExbD/TolR P40_04425 PF09312 SurA N-terminal domain P40_04425 PF00639 PPIC-type PPIASE domain P40_04460 PF12849 PBP superfamily domain P40_04465 PF00196 Bacterial regulatory proteins, luxR family P40_04465 PF03472 Autoinducer binding domain P40_04505 PF00106 short chain dehydrogenase P40_04545 PF05661 Protein of unknown function (DUF808) P40_04550 PF00501 AMP-binding enzyme P40_04550 PF13193 AMP-binding enzyme C-terminal domain P40_04555 PF00378 Enoyl-CoA hydratase/isomerase P40_04570 PF00106 short chain dehydrogenase P40_04580 PF03979 Sigma-70 factor, region 1.1 P40_04580 PF04546 Sigma-70, non-essential region P40_04580 PF00140 Sigma-70 factor, region 1.2 P40_04580 PF04542 Sigma-70 region 2 P40_04580 PF04539 Sigma-70 region 3 P40_04580 PF04545 Sigma-70, region 4 P40_04585 PF08278 DNA primase DnaG DnaB-binding P40_04585 PF13662 Toprim domain P40_04585 PF08275 DNA primase catalytic core, N-terminal domain P40_04585 PF01807 CHC2 zinc finger P40_04585 PF10410 DnaB-helicase binding domain of primase P40_04595 PF01165 Ribosomal protein S21 P40_04600 PF00814 Glycoprotease family P40_04605 PF02660 Glycerol-3-phosphate acyltransferase P40_04610 PF02152 Dihydroneopterin aldolase P40_04615 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) P40_04630 PF12627 Probable RNA and SrmB- binding site of polymerase A P40_04630 PF01743 Poly A polymerase head domain P40_04630 PF01966 HD domain P40_04635 PF03060 Nitronate monooxygenase P40_04640 PF04293 SpoVR like protein P40_04645 PF04285 Protein of unknown function (DUF444) P40_04650 PF06798 PrkA serine protein kinase C-terminal domain P40_04650 PF08298 PrkA AAA domain P40_04655 PF00149 Calcineurin-like phosphoesterase P40_04660 PF04379 ApaG domain P40_04665 PF00398 Ribosomal RNA adenine dimethylase P40_04670 PF04166 Pyridoxal phosphate biosynthetic protein PdxA P40_04675 PF09312 SurA N-terminal domain P40_04675 PF00639 PPIC-type PPIASE domain P40_04680 PF03968 OstA-like protein P40_04680 PF04453 LPS transport system D P40_04685 PF01636 Phosphotransferase enzyme family P40_04690 PF00483 Nucleotidyl transferase P40_04695 PF00834 Ribulose-phosphate 3 epimerase family P40_04705 PF00877 NlpC/P60 family P40_04710 PF01638 HxlR-like helix-turn-helix P40_04715 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_04715 PF00724 NADH:flavin oxidoreductase / NADH oxidase family P40_04720 PF07690 Major Facilitator Superfamily P40_04720 PF00083 Sugar (and other) transporter P40_04725 PF06481 COX Aromatic Rich Motif P40_04725 PF00116 Cytochrome C oxidase subunit II, periplasmic domain P40_04730 PF00115 Cytochrome C and Quinol oxidase polypeptide I P40_04735 PF00510 Cytochrome c oxidase subunit III P40_04740 PF03626 Prokaryotic Cytochrome C oxidase subunit IV P40_04750 PF00512 His Kinase A (phospho-acceptor) domain P40_04750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_04755 PF00072 Response regulator receiver domain P40_04760 PF04715 Anthranilate synthase component I, N terminal region P40_04760 PF00425 chorismate binding enzyme P40_04765 PF00117 Glutamine amidotransferase class-I P40_04770 PF02885 Glycosyl transferase family, helical bundle domain P40_04770 PF00591 Glycosyl transferase family, a/b domain P40_04775 PF00218 Indole-3-glycerol phosphate synthase P40_04780 PF13545 Crp-like helix-turn-helix domain P40_04780 PF00027 Cyclic nucleotide-binding domain P40_04785 PF02566 OsmC-like protein P40_04790 PF02675 S-adenosylmethionine decarboxylase P40_04795 PF03232 Ubiquinone biosynthesis protein COQ7 P40_04800 PF00072 Response regulator receiver domain P40_04800 PF00672 HAMP domain P40_04800 PF00512 His Kinase A (phospho-acceptor) domain P40_04800 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) P40_04800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_04800 PF01627 Hpt domain P40_04805 PF07885 Ion channel P40_04805 PF00027 Cyclic nucleotide-binding domain P40_04810 PF01925 Sulfite exporter TauE/SafE P40_04815 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain P40_04815 PF02843 Phosphoribosylglycinamide synthetase, C domain P40_04815 PF02844 Phosphoribosylglycinamide synthetase, N domain P40_04820 PF01808 AICARFT/IMPCHase bienzyme P40_04820 PF02142 MGS-like domain P40_04825 PF02954 Bacterial regulatory protein, Fis family P40_04830 PF01207 Dihydrouridine synthase (Dus) P40_04855 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain P40_04855 PF00289 Biotin carboxylase, N-terminal domain P40_04855 PF02785 Biotin carboxylase C-terminal domain P40_04860 PF00364 Biotin-requiring enzyme P40_04865 PF01220 Dehydroquinase class II P40_04870 PF02683 Cytochrome C biogenesis protein transmembrane region P40_04870 PF11412 Disulphide bond corrector protein DsbC P40_04880 PF13649 Methyltransferase domain P40_04895 PF12833 Helix-turn-helix domain P40_04895 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term P40_04900 PF00486 Transcriptional regulatory protein, C terminal P40_04900 PF00072 Response regulator receiver domain P40_04905 PF00512 His Kinase A (phospho-acceptor) domain P40_04905 PF08521 Two-component sensor kinase N-terminal P40_04905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_04925 PF13193 AMP-binding enzyme C-terminal domain P40_04925 PF00501 AMP-binding enzyme P40_04935 PF00719 Inorganic pyrophosphatase P40_04945 PF00860 Permease family P40_04970 PF03600 Citrate transporter P40_04985 PF07715 TonB-dependent Receptor Plug Domain P40_04985 PF00593 TonB dependent receptor P40_04990 PF00365 Phosphofructokinase P40_05005 PF01225 Mur ligase family, catalytic domain P40_05005 PF08245 Mur ligase middle domain P40_05005 PF02875 Mur ligase family, glutamate ligase domain P40_05010 PF02441 Flavoprotein P40_05015 PF03544 Gram-negative bacterial TonB protein C-terminal P40_05030 PF01618 MotA/TolQ/ExbB proton channel family P40_05035 PF17185 NlpE C-terminal OB domain P40_05035 PF04170 NlpE N-terminal domain P40_05045 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family P40_05060 PF01047 MarR family P40_05065 PF04055 Radical SAM superfamily P40_05065 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family P40_05070 PF03099 Biotin/lipoate A/B protein ligase family P40_05080 PF01063 Amino-transferase class IV P40_05085 PF07943 Penicillin-binding protein 5, C-terminal domain P40_05085 PF00768 D-alanyl-D-alanine carboxypeptidase P40_05090 PF03330 Lytic transglycolase P40_05090 PF05036 Sporulation related domain P40_05095 PF13406 Transglycosylase SLT domain P40_05100 PF01098 Cell cycle protein P40_05105 PF00905 Penicillin binding protein transpeptidase domain P40_05105 PF03717 Penicillin-binding Protein dimerisation domain P40_05110 PF02590 Predicted SPOUT methyltransferase P40_05125 PF00171 Aldehyde dehydrogenase family P40_05145 PF00133 tRNA synthetases class I (I, L, M and V) P40_05145 PF08264 Anticodon-binding domain of tRNA P40_05145 PF13603 Leucyl-tRNA synthetase, Domain 2 P40_05155 PF00939 Sodium:sulfate symporter transmembrane region P40_05160 PF01740 STAS domain P40_05160 PF00916 Sulfate permease family P40_05165 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding P40_05165 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_05165 PF10518 TAT (twin-arginine translocation) pathway signal sequence P40_05170 PF00753 Metallo-beta-lactamase superfamily P40_05180 PF00795 Carbon-nitrogen hydrolase P40_05185 PF02560 Cyanate lyase C-terminal domain P40_05190 PF03471 Transporter associated domain P40_05190 PF00571 CBS domain P40_05195 PF02130 Uncharacterized protein family UPF0054 P40_05200 PF02562 PhoH-like protein P40_05205 PF00005 ABC transporter P40_05205 PF12857 TOBE-like domain P40_05210 PF00528 Binding-protein-dependent transport system inner membrane component P40_05215 PF06100 MCRA family P40_05220 PF00528 Binding-protein-dependent transport system inner membrane component P40_05230 PF01938 TRAM domain P40_05230 PF00919 Uncharacterized protein family UPF0004 P40_05230 PF04055 Radical SAM superfamily P40_05235 PF02630 SCO1/SenC P40_05275 PF02562 PhoH-like protein P40_05275 PF13638 PIN domain P40_05285 PF03922 OmpW family P40_05290 PF00581 Rhodanese-like domain P40_05295 PF00270 DEAD/DEAH box helicase P40_05295 PF00271 Helicase conserved C-terminal domain P40_05305 PF00106 short chain dehydrogenase P40_05325 PF00474 Sodium:solute symporter family P40_05330 PF00313 'Cold-shock' DNA-binding domain P40_05345 PF01435 Peptidase family M48 P40_05350 PF04011 LemA family P40_05355 PF01040 UbiA prenyltransferase family P40_05360 PF02628 Cytochrome oxidase assembly protein P40_05380 PF01479 S4 domain P40_05380 PF00849 RNA pseudouridylate synthase P40_05385 PF00510 Cytochrome c oxidase subunit III P40_05390 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 P40_05395 PF00115 Cytochrome C and Quinol oxidase polypeptide I P40_05400 PF02790 Cytochrome C oxidase subunit II, transmembrane domain P40_05400 PF00116 Cytochrome C oxidase subunit II, periplasmic domain P40_05430 PF00271 Helicase conserved C-terminal domain P40_05430 PF12137 RNA polymerase recycling family C-terminal P40_05430 PF18337 RapA N-terminal Tudor like domain P40_05430 PF18339 RapA N-terminal Tudor like domain 1 P40_05430 PF00176 SNF2 family N-terminal domain P40_05465 PF01177 Asp/Glu/Hydantoin racemase P40_05470 PF00027 Cyclic nucleotide-binding domain P40_05470 PF13545 Crp-like helix-turn-helix domain P40_05475 PF00501 AMP-binding enzyme P40_05480 PF00005 ABC transporter P40_05480 PF12399 Branched-chain amino acid ATP-binding cassette transporter P40_05485 PF02653 Branched-chain amino acid transport system / permease component P40_05500 PF00005 ABC transporter P40_05510 PF02954 Bacterial regulatory protein, Fis family P40_05510 PF00158 Sigma-54 interaction domain P40_05510 PF01590 GAF domain P40_05515 PF00743 Flavin-binding monooxygenase-like P40_05525 PF00289 Biotin carboxylase, N-terminal domain P40_05525 PF02785 Biotin carboxylase C-terminal domain P40_05525 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain P40_05545 PF00528 Binding-protein-dependent transport system inner membrane component P40_05555 PF01738 Dienelactone hydrolase family P40_05570 PF01541 GIY-YIG catalytic domain P40_05580 PF04536 TPM domain P40_05605 PF00011 Hsp20/alpha crystallin family P40_05625 PF01527 Transposase P40_05630 PF13683 Integrase core domain P40_05630 PF13276 HTH-like domain P40_05640 PF02082 Transcriptional regulator P40_05645 PF00266 Aminotransferase class-V P40_05655 PF02657 Fe-S metabolism associated domain P40_05660 PF01883 Iron-sulfur cluster assembly protein P40_05665 PF01521 Iron-sulphur cluster biosynthesis P40_05670 PF00266 Aminotransferase class-V P40_05675 PF01458 Uncharacterized protein family (UPF0051) P40_05680 PF00005 ABC transporter P40_05685 PF01458 Uncharacterized protein family (UPF0051) P40_05690 PF00334 Nucleoside diphosphate kinase P40_05695 PF04055 Radical SAM superfamily P40_05705 PF13464 Domain of unknown function (DUF4115) P40_05710 PF04551 GcpE protein P40_05715 PF13393 Histidyl-tRNA synthetase P40_05715 PF03129 Anticodon binding domain P40_05725 PF13360 PQQ-like domain P40_05730 PF01926 50S ribosome-binding GTPase P40_05730 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal P40_05735 PF00593 TonB dependent receptor P40_05735 PF07715 TonB-dependent Receptor Plug Domain P40_05745 PF01627 Hpt domain P40_05745 PF00512 His Kinase A (phospho-acceptor) domain P40_05745 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) P40_05745 PF00072 Response regulator receiver domain P40_05745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_05745 PF00672 HAMP domain P40_05750 PF02601 Exonuclease VII, large subunit P40_05750 PF13742 OB-fold nucleic acid binding domain P40_05755 PF00478 IMP dehydrogenase / GMP reductase domain P40_05755 PF00571 CBS domain P40_05760 PF00117 Glutamine amidotransferase class-I P40_05760 PF00958 GMP synthase C terminal domain P40_05760 PF02540 NAD synthase P40_05765 PF13411 MerR HTH family regulatory protein P40_05770 PF01545 Cation efflux family P40_05785 PF00873 AcrB/AcrD/AcrF family P40_05790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion P40_05790 PF00529 HlyD membrane-fusion protein of T1SS P40_05800 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_05800 PF00403 Heavy-metal-associated domain P40_05800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain P40_05815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I P40_05815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II P40_05815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain P40_05815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III P40_05820 PF00809 Pterin binding enzyme P40_05825 PF12833 Helix-turn-helix domain P40_05825 PF12852 Cupin P40_05835 PF01734 Patatin-like phospholipase P40_05840 PF05726 Pirin C-terminal cupin domain P40_05840 PF02678 Pirin P40_05845 PF01047 MarR family P40_05845 PF00583 Acetyltransferase (GNAT) family P40_05880 PF07516 SecA Wing and Scaffold domain P40_05880 PF07517 SecA DEAD-like domain P40_05880 PF02810 SEC-C motif P40_05880 PF01043 SecA preprotein cross-linking domain P40_05890 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH P40_05940 PF01070 FMN-dependent dehydrogenase P40_05985 PF00557 Metallopeptidase family M24 P40_06010 PF01638 HxlR-like helix-turn-helix P40_06015 PF07690 Major Facilitator Superfamily P40_06040 PF01266 FAD dependent oxidoreductase P40_06065 PF07883 Cupin domain P40_06065 PF12833 Helix-turn-helix domain P40_06075 PF13085 2Fe-2S iron-sulfur cluster binding domain P40_06085 PF01168 Alanine racemase, N-terminal domain P40_06090 PF01381 Helix-turn-helix P40_06100 PF12852 Cupin P40_06100 PF12833 Helix-turn-helix domain P40_06105 PF07690 Major Facilitator Superfamily P40_06120 PF10127 RNA repair pathway DNA polymerase beta family P40_06140 PF01810 LysE type translocator P40_06145 PF14497 Glutathione S-transferase, C-terminal domain P40_06145 PF02798 Glutathione S-transferase, N-terminal domain P40_06165 PF01965 DJ-1/PfpI family P40_06170 PF00848 Ring hydroxylating alpha subunit (catalytic domain) P40_06170 PF00355 Rieske [2Fe-2S] domain P40_06180 PF00248 Aldo/keto reductase family P40_06200 PF01965 DJ-1/PfpI family P40_06205 PF01965 DJ-1/PfpI family P40_06210 PF07732 Multicopper oxidase P40_06225 PF00127 Copper binding proteins, plastocyanin/azurin family P40_06255 PF01209 ubiE/COQ5 methyltransferase family P40_06270 PF01047 MarR family P40_06280 PF01011 PQQ enzyme repeat P40_06280 PF13360 PQQ-like domain P40_06290 PF07690 Major Facilitator Superfamily P40_06300 PF03466 LysR substrate binding domain P40_06300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_06305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_06305 PF02770 Acyl-CoA dehydrogenase, middle domain P40_06305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_06310 PF02515 CoA-transferase family III P40_06315 PF03795 YCII-related domain P40_06330 PF07690 Major Facilitator Superfamily P40_06340 PF03466 LysR substrate binding domain P40_06340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_06345 PF17932 Tetracyclin repressor-like, C-terminal domain P40_06345 PF00440 Bacterial regulatory proteins, tetR family P40_06360 PF01168 Alanine racemase, N-terminal domain P40_06365 PF00155 Aminotransferase class I and II P40_06365 PF00392 Bacterial regulatory proteins, gntR family P40_06370 PF00440 Bacterial regulatory proteins, tetR family P40_06380 PF13460 NAD(P)H-binding P40_06385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_06385 PF03466 LysR substrate binding domain P40_06395 PF01297 Zinc-uptake complex component A periplasmic P40_06400 PF00005 ABC transporter P40_06405 PF00950 ABC 3 transport family P40_06410 PF00950 ABC 3 transport family P40_06415 PF07681 DoxX P40_06420 PF08774 VRR-NUC domain P40_06420 PF18081 Fanconi anemia-associated nuclease SAP domain P40_06435 PF01975 Survival protein SurE P40_06450 PF00378 Enoyl-CoA hydratase/isomerase P40_06455 PF13442 Cytochrome C oxidase, cbb3-type, subunit III P40_06460 PF02803 Thiolase, C-terminal domain P40_06460 PF00108 Thiolase, N-terminal domain P40_06475 PF16925 Tetracyclin repressor-like, C-terminal domain P40_06475 PF00440 Bacterial regulatory proteins, tetR family P40_06500 PF02222 ATP-grasp domain P40_06505 PF14437 MafB19-like deaminase P40_06510 PF00497 Bacterial extracellular solute-binding proteins, family 3 P40_06510 PF01464 Transglycosylase SLT domain P40_06515 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal P40_06515 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain P40_06515 PF02769 AIR synthase related protein, C-terminal domain P40_06525 PF01784 NIF3 (NGG1p interacting factor 3) P40_06530 PF00293 NUDIX domain P40_06530 PF09297 NADH pyrophosphatase zinc ribbon domain P40_06535 PF00293 NUDIX domain P40_06540 PF00132 Bacterial transferase hexapeptide (six repeats) P40_06550 PF01734 Patatin-like phospholipase P40_06555 PF00571 CBS domain P40_06555 PF01595 Cyclin M transmembrane N-terminal domain P40_06555 PF03471 Transporter associated domain P40_06565 PF02881 SRP54-type protein, helical bundle domain P40_06565 PF02978 Signal peptide binding domain P40_06565 PF00448 SRP54-type protein, GTPase domain P40_06570 PF00886 Ribosomal protein S16 P40_06575 PF01782 RimM N-terminal domain P40_06575 PF05239 PRC-barrel domain P40_06580 PF01746 tRNA (Guanine-1)-methyltransferase P40_06585 PF01245 Ribosomal protein L19 P40_06590 PF04226 Transglycosylase associated protein P40_06595 PF02899 Phage integrase, N-terminal SAM-like domain P40_06595 PF00589 Phage integrase family P40_06600 PF13098 Thioredoxin-like domain P40_06600 PF10411 Disulfide bond isomerase protein N-terminus P40_06605 PF00155 Aminotransferase class I and II P40_06610 PF00742 Homoserine dehydrogenase P40_06610 PF01842 ACT domain P40_06610 PF03447 Homoserine dehydrogenase, NAD binding domain P40_06615 PF00291 Pyridoxal-phosphate dependent enzyme P40_06625 PF02371 Transposase IS116/IS110/IS902 family P40_06625 PF01548 Transposase P40_06645 PF02515 CoA-transferase family III P40_06650 PF00588 SpoU rRNA Methylase family P40_06650 PF12105 SpoU, rRNA methylase, C-terminal P40_06660 PF13180 PDZ domain P40_06660 PF00595 PDZ domain P40_06675 PF00732 GMC oxidoreductase P40_06675 PF05199 GMC oxidoreductase P40_06690 PF06832 Penicillin-Binding Protein C-terminus Family P40_06690 PF00912 Transglycosylase P40_06690 PF00905 Penicillin binding protein transpeptidase domain P40_06695 PF00376 MerR family regulatory protein P40_06695 PF09278 MerR, DNA binding P40_06705 PF02028 BCCT, betaine/carnitine/choline family transporter P40_06725 PF00924 Mechanosensitive ion channel P40_06725 PF12795 Mechanosensitive ion channel porin domain P40_06725 PF12794 Mechanosensitive ion channel inner membrane domain 1 P40_06740 PF00586 AIR synthase related protein, N-terminal domain P40_06740 PF02769 AIR synthase related protein, C-terminal domain P40_06755 PF00440 Bacterial regulatory proteins, tetR family P40_06760 PF00111 2Fe-2S iron-sulfur cluster binding domain P40_06760 PF00175 Oxidoreductase NAD-binding domain P40_06760 PF00970 Oxidoreductase FAD-binding domain P40_06765 PF00487 Fatty acid desaturase P40_06770 PF12833 Helix-turn-helix domain P40_06770 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term P40_06775 PF06977 SdiA-regulated P40_06780 PF04186 FxsA cytoplasmic membrane protein P40_06790 PF02803 Thiolase, C-terminal domain P40_06790 PF00108 Thiolase, N-terminal domain P40_06810 PF00072 Response regulator receiver domain P40_06810 PF00486 Transcriptional regulatory protein, C terminal P40_06815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_06815 PF08918 PhoQ Sensor P40_06825 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_06825 PF00724 NADH:flavin oxidoreductase / NADH oxidase family P40_06830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_06830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_06830 PF02770 Acyl-CoA dehydrogenase, middle domain P40_06835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_06835 PF02770 Acyl-CoA dehydrogenase, middle domain P40_06835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_06845 PF05736 OprF membrane domain P40_06845 PF00691 OmpA family P40_06860 PF01235 Sodium:alanine symporter family P40_06865 PF12833 Helix-turn-helix domain P40_06865 PF01965 DJ-1/PfpI family P40_06890 PF07311 Dodecin P40_06895 PF00271 Helicase conserved C-terminal domain P40_06895 PF00270 DEAD/DEAH box helicase P40_06895 PF03880 DbpA RNA binding domain P40_06915 PF00486 Transcriptional regulatory protein, C terminal P40_06915 PF00072 Response regulator receiver domain P40_06920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_06920 PF16750 Sensor domain of 2-component histidine kinase P40_06920 PF00512 His Kinase A (phospho-acceptor) domain P40_06920 PF00672 HAMP domain P40_06925 PF00593 TonB dependent receptor P40_06925 PF07715 TonB-dependent Receptor Plug Domain P40_06935 PF01507 Phosphoadenosine phosphosulfate reductase family P40_06940 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF P40_06940 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF P40_06940 PF01189 16S rRNA methyltransferase RsmB/F P40_06950 PF00593 TonB dependent receptor P40_06950 PF07715 TonB-dependent Receptor Plug Domain P40_06970 PF00005 ABC transporter P40_06970 PF12848 ABC transporter P40_06975 PF17954 Quercetinase C-terminal cupin domain P40_06975 PF02678 Pirin P40_07020 PF02803 Thiolase, C-terminal domain P40_07020 PF00108 Thiolase, N-terminal domain P40_07025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain P40_07025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain P40_07025 PF00378 Enoyl-CoA hydratase/isomerase P40_07030 PF02272 DHHA1 domain P40_07030 PF17768 RecJ OB domain P40_07030 PF01368 DHH family P40_07040 PF03462 PCRF domain P40_07040 PF00472 RF-1 domain P40_07045 PF01336 OB-fold nucleic acid binding domain P40_07045 PF00152 tRNA synthetases class II (D, K and N) P40_07055 PF03167 Uracil DNA glycosylase superfamily P40_07060 PF00378 Enoyl-CoA hydratase/isomerase P40_07065 PF03060 Nitronate monooxygenase P40_07085 PF02910 Fumarate reductase flavoprotein C-term P40_07085 PF00890 FAD binding domain P40_07090 PF04542 Sigma-70 region 2 P40_07090 PF08281 Sigma-70, region 4 P40_07100 PF03888 MucB/RseB N-terminal domain P40_07100 PF17188 MucB/RseB C-terminal domain P40_07110 PF17820 PDZ domain P40_07110 PF13180 PDZ domain P40_07115 PF06421 GTP-binding protein LepA C-terminus P40_07115 PF00009 Elongation factor Tu GTP binding domain P40_07115 PF03144 Elongation factor Tu domain 2 P40_07115 PF00679 Elongation factor G C-terminus P40_07120 PF10502 Signal peptidase, peptidase S26 P40_07130 PF14622 Ribonuclease-III-like P40_07130 PF00035 Double-stranded RNA binding motif P40_07135 PF07650 KH domain P40_07135 PF01926 50S ribosome-binding GTPase P40_07140 PF11967 Recombination protein O N terminal P40_07140 PF02565 Recombination protein O C terminal P40_07145 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ P40_07155 PF13333 Integrase core domain P40_07155 PF00665 Integrase core domain P40_07155 PF13276 HTH-like domain P40_07160 PF01627 Hpt domain P40_07160 PF00512 His Kinase A (phospho-acceptor) domain P40_07160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_07160 PF00072 Response regulator receiver domain P40_07160 PF00672 HAMP domain P40_07160 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) P40_07165 PF00291 Pyridoxal-phosphate dependent enzyme P40_07175 PF05958 tRNA (Uracil-5-)-methyltransferase P40_07180 PF02824 TGS domain P40_07180 PF04607 Region found in RelA / SpoT proteins P40_07180 PF13291 ACT domain P40_07185 PF03819 MazG nucleotide pyrophosphohydrolase domain P40_07195 PF13411 MerR HTH family regulatory protein P40_07205 PF01252 Signal peptidase (SPase) II P40_07220 PF00109 Beta-ketoacyl synthase, N-terminal domain P40_07220 PF02801 Beta-ketoacyl synthase, C-terminal domain P40_07225 PF07977 FabA-like domain P40_07230 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal P40_07230 PF01578 Cytochrome C assembly protein P40_07235 PF08534 Redoxin P40_07240 PF03918 Cytochrome C biogenesis protein P40_07250 PF05191 Adenylate kinase, active site lid P40_07260 PF00210 Ferritin-like domain P40_07270 PF04277 Oxaloacetate decarboxylase, gamma chain P40_07275 PF00364 Biotin-requiring enzyme P40_07275 PF00682 HMGL-like P40_07275 PF02436 Conserved carboxylase domain P40_07280 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit P40_07295 PF00005 ABC transporter P40_07300 PF00528 Binding-protein-dependent transport system inner membrane component P40_07305 PF00005 ABC transporter P40_07315 PF00005 ABC transporter P40_07320 PF08267 Cobalamin-independent synthase, N-terminal domain P40_07320 PF01717 Cobalamin-independent synthase, Catalytic domain P40_07325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_07325 PF03466 LysR substrate binding domain P40_07330 PF00893 Small Multidrug Resistance protein P40_07340 PF00005 ABC transporter P40_07345 PF03379 CcmB protein P40_07350 PF01578 Cytochrome C assembly protein P40_07355 PF04995 Heme exporter protein D (CcmD) P40_07360 PF03100 CcmE P40_07365 PF07995 Glucose / Sorbosone dehydrogenase P40_07415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_07415 PF03466 LysR substrate binding domain P40_07445 PF00005 ABC transporter P40_07450 PF01061 ABC-2 type transporter P40_07455 PF14489 QueF-like protein P40_07455 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term P40_07460 PF13276 HTH-like domain P40_07460 PF00665 Integrase core domain P40_07460 PF13333 Integrase core domain P40_07470 PF03806 AbgT putative transporter family P40_07475 PF00211 Adenylate and Guanylate cyclase catalytic domain P40_07480 PF00881 Nitroreductase family P40_07505 PF01381 Helix-turn-helix P40_07540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_07540 PF03466 LysR substrate binding domain P40_07545 PF00561 alpha/beta hydrolase fold P40_07560 PF13458 Periplasmic binding protein P40_07565 PF02653 Branched-chain amino acid transport system / permease component P40_07575 PF00005 ABC transporter P40_07575 PF12399 Branched-chain amino acid ATP-binding cassette transporter P40_07580 PF00005 ABC transporter P40_07585 PF00501 AMP-binding enzyme P40_07585 PF13193 AMP-binding enzyme C-terminal domain P40_07590 PF07690 Major Facilitator Superfamily P40_07600 PF00108 Thiolase, N-terminal domain P40_07600 PF02803 Thiolase, C-terminal domain P40_07605 PF00106 short chain dehydrogenase P40_07610 PF01575 MaoC like domain P40_07615 PF02770 Acyl-CoA dehydrogenase, middle domain P40_07615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_07615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_07620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_07620 PF02770 Acyl-CoA dehydrogenase, middle domain P40_07620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_07625 PF18665 Tetracyclin repressor-like, C-terminal domain P40_07625 PF00440 Bacterial regulatory proteins, tetR family P40_07630 PF00378 Enoyl-CoA hydratase/isomerase P40_07640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_07640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_07640 PF02770 Acyl-CoA dehydrogenase, middle domain P40_07665 PF08450 SMP-30/Gluconolactonase/LRE-like region P40_07670 PF00795 Carbon-nitrogen hydrolase P40_07680 PF00171 Aldehyde dehydrogenase family P40_07700 PF00072 Response regulator receiver domain P40_07700 PF00196 Bacterial regulatory proteins, luxR family P40_07710 PF00072 Response regulator receiver domain P40_07710 PF09456 RcsC Alpha-Beta-Loop (ABL) P40_07710 PF00512 His Kinase A (phospho-acceptor) domain P40_07710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_07740 PF16123 Hydroxyacylglutathione hydrolase C-terminus P40_07740 PF00753 Metallo-beta-lactamase superfamily P40_07745 PF00171 Aldehyde dehydrogenase family P40_07750 PF08240 Alcohol dehydrogenase GroES-like domain P40_07760 PF02321 Outer membrane efflux protein P40_07765 PF00873 AcrB/AcrD/AcrF family P40_07770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion P40_07770 PF00529 HlyD membrane-fusion protein of T1SS P40_07775 PF08361 MAATS-type transcriptional repressor, C-terminal region P40_07775 PF00440 Bacterial regulatory proteins, tetR family P40_07780 PF00106 short chain dehydrogenase P40_07785 PF01636 Phosphotransferase enzyme family P40_07790 PF01975 Survival protein SurE P40_07795 PF13193 AMP-binding enzyme C-terminal domain P40_07795 PF00501 AMP-binding enzyme P40_07800 PF02653 Branched-chain amino acid transport system / permease component P40_07805 PF02653 Branched-chain amino acid transport system / permease component P40_07805 PF11862 Domain of unknown function (DUF3382) P40_07810 PF00005 ABC transporter P40_07810 PF12399 Branched-chain amino acid ATP-binding cassette transporter P40_07815 PF00005 ABC transporter P40_07825 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain P40_07825 PF00378 Enoyl-CoA hydratase/isomerase P40_07825 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain P40_07830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_07830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_07830 PF02770 Acyl-CoA dehydrogenase, middle domain P40_07835 PF02770 Acyl-CoA dehydrogenase, middle domain P40_07835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_07835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_07840 PF16884 N-terminal domain of oxidoreductase P40_07840 PF00107 Zinc-binding dehydrogenase P40_07845 PF07690 Major Facilitator Superfamily P40_07850 PF02558 Ketopantoate reductase PanE/ApbA P40_07850 PF08546 Ketopantoate reductase PanE/ApbA C terminal P40_07855 PF00593 TonB dependent receptor P40_07855 PF07715 TonB-dependent Receptor Plug Domain P40_07875 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin P40_07880 PF01850 PIN domain P40_07885 PF01515 Phosphate acetyl/butaryl transferase P40_07885 PF00390 Malic enzyme, N-terminal domain P40_07885 PF03949 Malic enzyme, NAD binding domain P40_07890 PF00596 Class II Aldolase and Adducin N-terminal domain P40_07895 PF08240 Alcohol dehydrogenase GroES-like domain P40_07895 PF00698 Acyl transferase domain P40_07895 PF16197 Ketoacyl-synthetase C-terminal extension P40_07895 PF00109 Beta-ketoacyl synthase, N-terminal domain P40_07895 PF02801 Beta-ketoacyl synthase, C-terminal domain P40_07895 PF08659 KR domain P40_07895 PF00550 Phosphopantetheine attachment site P40_07895 PF08990 Erythronolide synthase docking P40_07895 PF14765 Polyketide synthase dehydratase P40_07905 PF01850 PIN domain P40_07920 PF00583 Acetyltransferase (GNAT) family P40_07920 PF13607 Succinyl-CoA ligase like flavodoxin domain P40_07920 PF13380 CoA binding domain P40_07925 PF13452 N-terminal half of MaoC dehydratase P40_07930 PF02770 Acyl-CoA dehydrogenase, middle domain P40_07930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_07930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_07935 PF00378 Enoyl-CoA hydratase/isomerase P40_07940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_07940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_07940 PF02770 Acyl-CoA dehydrogenase, middle domain P40_07945 PF00106 short chain dehydrogenase P40_07950 PF16868 NMT1-like family P40_07985 PF02803 Thiolase, C-terminal domain P40_07985 PF00108 Thiolase, N-terminal domain P40_07990 PF01047 MarR family P40_07995 PF02566 OsmC-like protein P40_08020 PF08240 Alcohol dehydrogenase GroES-like domain P40_08020 PF00107 Zinc-binding dehydrogenase P40_08025 PF09186 Domain of unknown function (DUF1949) P40_08025 PF01205 Uncharacterized protein family UPF0029 P40_08035 PF14052 Capsule assembly protein Wzi P40_08040 PF02563 Polysaccharide biosynthesis/export protein P40_08040 PF18412 Outer-membrane lipoprotein Wza C-terminal domain P40_08040 PF10531 SLBB domain P40_08045 PF01451 Low molecular weight phosphotyrosine protein phosphatase P40_08050 PF02706 Chain length determinant protein P40_08050 PF13807 G-rich domain on putative tyrosine kinase P40_08050 PF13614 AAA domain P40_08055 PF03600 Citrate transporter P40_08055 PF02080 TrkA-C domain P40_08095 PF01966 HD domain P40_08105 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain P40_08105 PF00753 Metallo-beta-lactamase superfamily P40_08105 PF10996 Beta-Casp domain P40_08120 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) P40_08135 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain P40_08135 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain P40_08135 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain P40_08145 PF00483 Nucleotidyl transferase P40_08150 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain P40_08150 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain P40_08150 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain P40_08155 PF00342 Phosphoglucose isomerase P40_08160 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain P40_08160 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I P40_08160 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II P40_08160 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III P40_08165 PF01370 NAD dependent epimerase/dehydratase family P40_08170 PF02397 Bacterial sugar transferase P40_08175 PF01757 Acyltransferase family P40_08265 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component P40_08275 PF03480 Bacterial extracellular solute-binding protein, family 7 P40_08285 PF00108 Thiolase, N-terminal domain P40_08285 PF02803 Thiolase, C-terminal domain P40_08290 PF00501 AMP-binding enzyme P40_08290 PF13193 AMP-binding enzyme C-terminal domain P40_08305 PF02719 Polysaccharide biosynthesis protein P40_08310 PF00155 Aminotransferase class I and II P40_08310 PF00392 Bacterial regulatory proteins, gntR family P40_08320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain P40_08320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III P40_08320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I P40_08320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II P40_08335 PF04851 Type III restriction enzyme, res subunit P40_08335 PF00271 Helicase conserved C-terminal domain P40_08335 PF02151 UvrB/uvrC motif P40_08335 PF12344 Ultra-violet resistance protein B P40_08335 PF17757 UvrB interaction domain P40_08375 PF04828 Glutathione-dependent formaldehyde-activating enzyme P40_08380 PF12697 Alpha/beta hydrolase family P40_08390 PF01381 Helix-turn-helix P40_08395 PF05973 Phage derived protein Gp49-like (DUF891) P40_08400 PF02463 RecF/RecN/SMC N terminal domain P40_08405 PF04354 ZipA, C-terminal FtsZ-binding domain P40_08410 PF03119 NAD-dependent DNA ligase C4 zinc finger domain P40_08410 PF01653 NAD-dependent DNA ligase adenylation domain P40_08410 PF00533 BRCA1 C Terminus (BRCT) domain P40_08410 PF12826 Helix-hairpin-helix motif P40_08410 PF03120 NAD-dependent DNA ligase OB-fold domain P40_08420 PF06794 Uncharacterised protein family (UPF0270) P40_08425 PF01266 FAD dependent oxidoreductase P40_08425 PF05430 S-adenosyl-L-methionine-dependent methyltransferase P40_08435 PF12262 Bacterial virulence factor lipase N-terminal P40_08445 PF00672 HAMP domain P40_08445 PF00512 His Kinase A (phospho-acceptor) domain P40_08445 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) P40_08445 PF00072 Response regulator receiver domain P40_08445 PF01627 Hpt domain P40_08445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_08455 PF13533 Biotin-lipoyl like P40_08470 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_08470 PF00724 NADH:flavin oxidoreductase / NADH oxidase family P40_08475 PF13649 Methyltransferase domain P40_08480 PF08003 Protein of unknown function (DUF1698) P40_08515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_08515 PF03466 LysR substrate binding domain P40_08530 PF00501 AMP-binding enzyme P40_08530 PF13193 AMP-binding enzyme C-terminal domain P40_08535 PF00501 AMP-binding enzyme P40_08535 PF13193 AMP-binding enzyme C-terminal domain P40_08535 PF16177 Acetyl-coenzyme A synthetase N-terminus P40_08540 PF02785 Biotin carboxylase C-terminal domain P40_08540 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain P40_08540 PF00364 Biotin-requiring enzyme P40_08540 PF00289 Biotin carboxylase, N-terminal domain P40_08545 PF00378 Enoyl-CoA hydratase/isomerase P40_08550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_08550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_08550 PF02770 Acyl-CoA dehydrogenase, middle domain P40_08555 PF01039 Carboxyl transferase domain P40_08560 PF00106 short chain dehydrogenase P40_08570 PF00440 Bacterial regulatory proteins, tetR family P40_08570 PF17932 Tetracyclin repressor-like, C-terminal domain P40_08595 PF07885 Ion channel P40_08595 PF00027 Cyclic nucleotide-binding domain P40_08600 PF01513 ATP-NAD kinase P40_08610 PF11940 Domain of unknown function (DUF3458) Ig-like fold P40_08610 PF17432 Domain of unknown function (DUF3458_C) ARM repeats P40_08610 PF01433 Peptidase family M1 domain P40_08615 PF07044 Protein of unknown function (DUF1329) P40_08620 PF01180 Dihydroorotate dehydrogenase P40_08630 PF04957 Ribosome modulation factor P40_08635 PF01170 Putative RNA methylase family UPF0020 P40_08635 PF10672 S-adenosylmethionine-dependent methyltransferase P40_08645 PF01026 TatD related DNase P40_08655 PF00717 Peptidase S24-like P40_08655 PF01726 LexA DNA binding domain P40_08665 PF00582 Universal stress protein family P40_08670 PF01131 DNA topoisomerase P40_08670 PF01751 Toprim domain P40_08670 PF08272 Topoisomerase I zinc-ribbon-like P40_08670 PF01396 Topoisomerase DNA binding C4 zinc finger P40_08680 PF03471 Transporter associated domain P40_08680 PF00571 CBS domain P40_08680 PF01595 Cyclin M transmembrane N-terminal domain P40_08685 PF00440 Bacterial regulatory proteins, tetR family P40_08690 PF03734 L,D-transpeptidase catalytic domain P40_08695 PF00933 Glycosyl hydrolase family 3 N terminal domain P40_08700 PF00924 Mechanosensitive ion channel P40_08710 PF01048 Phosphorylase superfamily P40_08725 PF00364 Biotin-requiring enzyme P40_08725 PF02817 e3 binding domain P40_08725 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) P40_08730 PF02779 Transketolase, pyrimidine binding domain P40_08730 PF02780 Transketolase, C-terminal domain P40_08735 PF00676 Dehydrogenase E1 component P40_08740 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase P40_08740 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain P40_08745 PF01548 Transposase P40_08745 PF02371 Transposase IS116/IS110/IS902 family P40_08755 PF03461 TRCF domain P40_08755 PF02559 CarD-like/TRCF domain P40_08755 PF00271 Helicase conserved C-terminal domain P40_08755 PF00270 DEAD/DEAH box helicase P40_08755 PF17757 UvrB interaction domain P40_08765 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain P40_08765 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain P40_08770 PF11973 NQRA C-terminal domain P40_08770 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) P40_08775 PF03116 NQR2, RnfD, RnfE family P40_08780 PF04205 FMN-binding domain P40_08785 PF02508 Rnf-Nqr subunit, membrane protein P40_08790 PF02508 Rnf-Nqr subunit, membrane protein P40_08795 PF00970 Oxidoreductase FAD-binding domain P40_08795 PF00175 Oxidoreductase NAD-binding domain P40_08795 PF00111 2Fe-2S iron-sulfur cluster binding domain P40_08800 PF02424 ApbE family P40_08805 PF04400 (Na+)-NQR maturation NqrM P40_08820 PF03009 Glycerophosphoryl diester phosphodiesterase family P40_08830 PF00534 Glycosyl transferases group 1 P40_08830 PF13439 Glycosyltransferase Family 4 P40_08845 PF03466 LysR substrate binding domain P40_08845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_08865 PF00795 Carbon-nitrogen hydrolase P40_08870 PF04371 Porphyromonas-type peptidyl-arginine deiminase P40_08880 PF12704 MacB-like periplasmic core domain P40_08880 PF02687 FtsX-like permease family P40_08885 PF00005 ABC transporter P40_08890 PF02028 BCCT, betaine/carnitine/choline family transporter P40_08900 PF17863 AAA lid domain P40_08900 PF07726 ATPase family associated with various cellular activities (AAA) P40_08930 PF03358 NADPH-dependent FMN reductase P40_08935 PF03960 ArsC family P40_08940 PF03631 Virulence factor BrkB P40_08945 PF00708 Acylphosphatase P40_08950 PF00561 alpha/beta hydrolase fold P40_08960 PF07859 alpha/beta hydrolase fold P40_08975 PF00501 AMP-binding enzyme P40_08975 PF13193 AMP-binding enzyme C-terminal domain P40_08985 PF00378 Enoyl-CoA hydratase/isomerase P40_09000 PF00005 ABC transporter P40_09000 PF12399 Branched-chain amino acid ATP-binding cassette transporter P40_09005 PF00005 ABC transporter P40_09010 PF02653 Branched-chain amino acid transport system / permease component P40_09025 PF03776 Septum formation topological specificity factor MinE P40_09030 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain P40_09035 PF05209 Septum formation inhibitor MinC, N-terminal domain P40_09035 PF03775 Septum formation inhibitor MinC, C-terminal domain P40_09045 PF13657 HipA N-terminal domain P40_09045 PF07804 HipA-like C-terminal domain P40_09055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_09055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_09055 PF09317 Domain of unknown function (DUF1974) P40_09055 PF02770 Acyl-CoA dehydrogenase, middle domain P40_09060 PF00085 Thioredoxin P40_09065 PF00909 Ammonium Transporter Family P40_09070 PF03976 Polyphosphate kinase 2 (PPK2) P40_09080 PF13307 Helicase C-terminal domain P40_09080 PF04851 Type III restriction enzyme, res subunit P40_09085 PF00814 Glycoprotease family P40_09095 PF02673 Bacitracin resistance protein BacA P40_09100 PF04445 Putative SAM-dependent methyltransferase P40_09105 PF01553 Acyltransferase P40_09115 PF00892 EamA-like transporter family P40_09120 PF00171 Aldehyde dehydrogenase family P40_09125 PF01546 Peptidase family M20/M25/M40 P40_09125 PF07687 Peptidase dimerisation domain P40_09130 PF14602 Hexapeptide repeat of succinyl-transferase P40_09130 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle P40_09135 PF03960 ArsC family P40_09140 PF00155 Aminotransferase class I and II P40_09145 PF01909 Nucleotidyltransferase domain P40_09145 PF08335 GlnD PII-uridylyltransferase P40_09145 PF01842 ACT domain P40_09145 PF01966 HD domain P40_09150 PF00557 Metallopeptidase family M24 P40_09155 PF00318 Ribosomal protein S2 P40_09160 PF00889 Elongation factor TS P40_09165 PF00696 Amino acid kinase family P40_09170 PF01765 Ribosome recycling factor P40_09175 PF01255 Putative undecaprenyl diphosphate synthase P40_09185 PF13288 DXP reductoisomerase C-terminal domain P40_09185 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase P40_09185 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain P40_09190 PF17820 PDZ domain P40_09190 PF13180 PDZ domain P40_09190 PF02163 Peptidase family M50 P40_09195 PF01103 Surface antigen P40_09195 PF07244 Surface antigen variable number repeat P40_09205 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD P40_09205 PF14602 Hexapeptide repeat of succinyl-transferase P40_09205 PF00132 Bacterial transferase hexapeptide (six repeats) P40_09210 PF07977 FabA-like domain P40_09215 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 P40_09215 PF00132 Bacterial transferase hexapeptide (six repeats) P40_09220 PF02684 Lipid-A-disaccharide synthetase P40_09225 PF01351 Ribonuclease HII P40_09230 PF17657 Bacterial DNA polymerase III alpha subunit finger domain P40_09230 PF07733 Bacterial DNA polymerase III alpha NTPase domain P40_09230 PF01336 OB-fold nucleic acid binding domain P40_09230 PF14579 Helix-hairpin-helix motif P40_09230 PF02811 PHP domain P40_09235 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit P40_09240 PF01171 PP-loop family P40_09240 PF11734 TilS substrate C-terminal domain P40_09240 PF09179 TilS substrate binding domain P40_09245 PF00117 Glutamine amidotransferase class-I P40_09245 PF06418 CTP synthase N-terminus P40_09250 PF00793 DAHP synthetase I family P40_09255 PF00113 Enolase, C-terminal TIM barrel domain P40_09255 PF03952 Enolase, N-terminal domain P40_09260 PF04977 Septum formation initiator P40_09265 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase P40_09270 PF02542 YgbB family P40_09275 PF01142 tRNA pseudouridine synthase D (TruD) P40_09290 PF01551 Peptidase family M23 P40_09290 PF01476 LysM domain P40_09295 PF01545 Cation efflux family P40_09295 PF16916 Dimerisation domain of Zinc Transporter P40_09320 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain P40_09320 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain P40_09330 PF00106 short chain dehydrogenase P40_09335 PF01171 PP-loop family P40_09340 PF01274 Malate synthase P40_09345 PF03466 LysR substrate binding domain P40_09345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_09350 PF07690 Major Facilitator Superfamily P40_09355 PF00248 Aldo/keto reductase family P40_09360 PF00248 Aldo/keto reductase family P40_09375 PF02390 Putative methyltransferase P40_09380 PF07690 Major Facilitator Superfamily P40_09385 PF00291 Pyridoxal-phosphate dependent enzyme P40_09395 PF08007 Cupin superfamily protein P40_09400 PF00206 Lyase P40_09400 PF08328 Adenylosuccinate lyase C-terminal P40_09405 PF04356 Protein of unknown function (DUF489) P40_09415 PF00293 NUDIX domain P40_09420 PF00849 RNA pseudouridylate synthase P40_09425 PF00180 Isocitrate/isopropylmalate dehydrogenase P40_09430 PF00313 'Cold-shock' DNA-binding domain P40_09435 PF02617 ATP-dependent Clp protease adaptor protein ClpS P40_09440 PF02861 Clp amino terminal domain, pathogenicity island component P40_09440 PF07724 AAA domain (Cdc48 subfamily) P40_09440 PF10431 C-terminal, D2-small domain, of ClpB protein P40_09440 PF17871 AAA lid domain P40_09440 PF00004 ATPase family associated with various cellular activities (AAA) P40_09445 PF01176 Translation initiation factor 1A / IF-1 P40_09450 PF04376 Arginine-tRNA-protein transferase, N terminus P40_09450 PF04377 Arginine-tRNA-protein transferase, C terminus P40_09455 PF00501 AMP-binding enzyme P40_09455 PF13193 AMP-binding enzyme C-terminal domain P40_09465 PF03588 Leucyl/phenylalanyl-tRNA protein transferase P40_09470 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_09475 PF01580 FtsK/SpoIIIE family P40_09475 PF09397 Ftsk gamma domain P40_09475 PF13491 4TM region of DNA translocase FtsK/SpoIIIE P40_09475 PF17854 FtsK alpha domain P40_09480 PF03548 Outer membrane lipoprotein carrier protein LolA P40_09485 PF12002 MgsA AAA+ ATPase C terminal P40_09485 PF16193 AAA C-terminal domain P40_09485 PF00004 ATPase family associated with various cellular activities (AAA) P40_09490 PF02537 CrcB-like protein, Camphor Resistance (CrcB) P40_09495 PF02403 Seryl-tRNA synthetase N-terminal domain P40_09495 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) P40_09500 PF14824 Sirohaem biosynthesis protein central P40_09500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases P40_09500 PF10414 Sirohaem synthase dimerisation region P40_09505 PF02885 Glycosyl transferase family, helical bundle domain P40_09505 PF00591 Glycosyl transferase family, a/b domain P40_09520 PF02635 DsrE/DsrF-like family P40_09525 PF01027 Inhibitor of apoptosis-promoting Bax1 P40_09545 PF00664 ABC transporter transmembrane region P40_09545 PF03412 Peptidase C39 family P40_09545 PF00005 ABC transporter P40_09550 PF00529 HlyD membrane-fusion protein of T1SS P40_09550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion P40_09555 PF00561 alpha/beta hydrolase fold P40_09560 PF12833 Helix-turn-helix domain P40_09560 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term P40_09570 PF00561 alpha/beta hydrolase fold P40_09605 PF07690 Major Facilitator Superfamily P40_09615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_09615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_09615 PF02770 Acyl-CoA dehydrogenase, middle domain P40_09630 PF03328 HpcH/HpaI aldolase/citrate lyase family P40_09635 PF02515 CoA-transferase family III P40_09640 PF03972 MmgE/PrpD family P40_09645 PF02770 Acyl-CoA dehydrogenase, middle domain P40_09645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_09645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_09655 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term P40_09655 PF12833 Helix-turn-helix domain P40_09665 PF13193 AMP-binding enzyme C-terminal domain P40_09665 PF00501 AMP-binding enzyme P40_09680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_09680 PF02770 Acyl-CoA dehydrogenase, middle domain P40_09680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_09685 PF00501 AMP-binding enzyme P40_09685 PF13193 AMP-binding enzyme C-terminal domain P40_09690 PF07729 FCD domain P40_09690 PF00392 Bacterial regulatory proteins, gntR family P40_09695 PF03061 Thioesterase superfamily P40_09700 PF01810 LysE type translocator P40_09705 PF17886 HSP20-like domain found in ArsA P40_09705 PF02374 Anion-transporting ATPase P40_09715 PF02554 Carbon starvation protein CstA P40_09715 PF13722 5TM C-terminal transporter carbon starvation CstA P40_09725 PF01541 GIY-YIG catalytic domain P40_09725 PF08459 UvrC Helix-hairpin-helix N-terminal P40_09725 PF02151 UvrB/uvrC motif P40_09725 PF12826 Helix-hairpin-helix motif P40_09730 PF01066 CDP-alcohol phosphatidyltransferase P40_09750 PF02899 Phage integrase, N-terminal SAM-like domain P40_09750 PF00589 Phage integrase family P40_09770 PF00873 AcrB/AcrD/AcrF family P40_09790 PF13193 AMP-binding enzyme C-terminal domain P40_09790 PF00501 AMP-binding enzyme P40_09795 PF02770 Acyl-CoA dehydrogenase, middle domain P40_09795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_09795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_09800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_09800 PF02770 Acyl-CoA dehydrogenase, middle domain P40_09800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_09805 PF05199 GMC oxidoreductase P40_09805 PF00732 GMC oxidoreductase P40_09815 PF00106 short chain dehydrogenase P40_09820 PF00743 Flavin-binding monooxygenase-like P40_09830 PF13205 Bacterial Ig-like domain P40_09835 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) P40_09840 PF00501 AMP-binding enzyme P40_09840 PF13193 AMP-binding enzyme C-terminal domain P40_09850 PF13193 AMP-binding enzyme C-terminal domain P40_09850 PF00501 AMP-binding enzyme P40_09855 PF00501 AMP-binding enzyme P40_09855 PF13193 AMP-binding enzyme C-terminal domain P40_09875 PF13452 N-terminal half of MaoC dehydratase P40_09880 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III P40_09880 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal P40_09890 PF02770 Acyl-CoA dehydrogenase, middle domain P40_09890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_09890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_09900 PF00743 Flavin-binding monooxygenase-like P40_09905 PF07859 alpha/beta hydrolase fold P40_09910 PF00106 short chain dehydrogenase P40_09920 PF12833 Helix-turn-helix domain P40_09920 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term P40_09925 PF00111 2Fe-2S iron-sulfur cluster binding domain P40_09930 PF00067 Cytochrome P450 P40_09935 PF00732 GMC oxidoreductase P40_09935 PF05199 GMC oxidoreductase P40_09940 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_09940 PF14759 Reductase C-terminal P40_09945 PF17754 MftR C-terminal domain P40_09945 PF00440 Bacterial regulatory proteins, tetR family P40_09955 PF00665 Integrase core domain P40_09955 PF13276 HTH-like domain P40_09955 PF13333 Integrase core domain P40_09965 PF04002 RadC-like JAB domain P40_09995 PF03527 RHS protein P40_10030 PF04002 RadC-like JAB domain P40_10080 PF13361 UvrD-like helicase C-terminal domain P40_10080 PF00580 UvrD/REP helicase N-terminal domain P40_10255 PF01751 Toprim domain P40_10255 PF01131 DNA topoisomerase P40_10345 PF13614 AAA domain P40_10355 PF01202 Shikimate kinase P40_10360 PF00005 ABC transporter P40_10365 PF00005 ABC transporter P40_10365 PF12399 Branched-chain amino acid ATP-binding cassette transporter P40_10375 PF02653 Branched-chain amino acid transport system / permease component P40_10380 PF13458 Periplasmic binding protein P40_10405 PF13193 AMP-binding enzyme C-terminal domain P40_10405 PF00501 AMP-binding enzyme P40_10410 PF08240 Alcohol dehydrogenase GroES-like domain P40_10410 PF00107 Zinc-binding dehydrogenase P40_10415 PF00364 Biotin-requiring enzyme P40_10415 PF02785 Biotin carboxylase C-terminal domain P40_10415 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain P40_10415 PF00682 HMGL-like P40_10415 PF02436 Conserved carboxylase domain P40_10415 PF00289 Biotin carboxylase, N-terminal domain P40_10420 PF00501 AMP-binding enzyme P40_10420 PF13193 AMP-binding enzyme C-terminal domain P40_10430 PF12833 Helix-turn-helix domain P40_10435 PF02668 Taurine catabolism dioxygenase TauD, TfdA family P40_10445 PF13193 AMP-binding enzyme C-terminal domain P40_10445 PF00501 AMP-binding enzyme P40_10460 PF01425 Amidase P40_10470 PF05726 Pirin C-terminal cupin domain P40_10470 PF02678 Pirin P40_10515 PF04972 BON domain P40_10515 PF00691 OmpA family P40_10580 PF07724 AAA domain (Cdc48 subfamily) P40_10580 PF00004 ATPase family associated with various cellular activities (AAA) P40_10580 PF10431 C-terminal, D2-small domain, of ClpB protein P40_10580 PF17871 AAA lid domain P40_10625 PF00072 Response regulator receiver domain P40_10625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_10625 PF09308 LuxQ, periplasmic P40_10625 PF00512 His Kinase A (phospho-acceptor) domain P40_10630 PF03705 CheR methyltransferase, all-alpha domain P40_10630 PF01739 CheR methyltransferase, SAM binding domain P40_10635 PF00072 Response regulator receiver domain P40_10640 PF01339 CheB methylesterase P40_10645 PF00072 Response regulator receiver domain P40_10650 PF00437 Type II/IV secretion system protein P40_10655 PF00482 Type II secretion system (T2SS), protein F P40_10660 PF08334 Type II secretion system (T2SS), protein G P40_10660 PF07963 Prokaryotic N-terminal methylation motif P40_10665 PF07963 Prokaryotic N-terminal methylation motif P40_10665 PF12019 Type II transport protein GspH P40_10670 PF02501 Type II secretion system (T2SS), protein I P40_10670 PF07963 Prokaryotic N-terminal methylation motif P40_10675 PF07963 Prokaryotic N-terminal methylation motif P40_10675 PF11612 Type II secretion system (T2SS), protein J P40_10705 PF00809 Pterin binding enzyme P40_10705 PF02607 B12 binding domain P40_10705 PF02965 Vitamin B12 dependent methionine synthase, activation domain P40_10705 PF02574 Homocysteine S-methyltransferase P40_10705 PF02310 B12 binding domain P40_10720 PF05175 Methyltransferase small domain P40_10730 PF03079 ARD/ARD' family P40_10735 PF00596 Class II Aldolase and Adducin N-terminal domain P40_10740 PF01008 Initiation factor 2 subunit family P40_10770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_10770 PF03466 LysR substrate binding domain P40_10780 PF06450 Bacterial Na+/H+ antiporter B (NhaB) P40_10790 PF00293 NUDIX domain P40_10790 PF09297 NADH pyrophosphatase zinc ribbon domain P40_10800 PF08496 Peptidase family S49 N-terminal P40_10800 PF01343 Peptidase family S49 P40_10805 PF08240 Alcohol dehydrogenase GroES-like domain P40_10805 PF00107 Zinc-binding dehydrogenase P40_10810 PF01544 CorA-like Mg2+ transporter protein P40_10820 PF01077 Nitrite and sulphite reductase 4Fe-4S domain P40_10820 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain P40_10830 PF01554 MatE P40_10835 PF01521 Iron-sulphur cluster biosynthesis P40_10835 PF01106 NifU-like domain P40_10840 PF01548 Transposase P40_10840 PF02371 Transposase IS116/IS110/IS902 family P40_10845 PF01435 Peptidase family M48 P40_10850 PF03109 ABC1 family P40_10855 PF00561 alpha/beta hydrolase fold P40_10865 PF00849 RNA pseudouridylate synthase P40_10870 PF00004 ATPase family associated with various cellular activities (AAA) P40_10870 PF05362 Lon protease (S16) C-terminal proteolytic domain P40_10870 PF02190 ATP-dependent protease La (LON) substrate-binding domain P40_10880 PF00561 alpha/beta hydrolase fold P40_10890 PF00919 Uncharacterized protein family UPF0004 P40_10890 PF18693 TRAM domain P40_10890 PF04055 Radical SAM superfamily P40_10910 PF04542 Sigma-70 region 2 P40_10910 PF08281 Sigma-70, region 4 P40_10920 PF02233 NAD(P) transhydrogenase beta subunit P40_10925 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch P40_10930 PF05222 Alanine dehydrogenase/PNT, N-terminal domain P40_10930 PF01262 Alanine dehydrogenase/PNT, C-terminal domain P40_10935 PF03109 ABC1 family P40_10945 PF03572 Peptidase family S41 P40_10945 PF11818 C-terminal domain of tail specific protease (DUF3340) P40_10945 PF00595 PDZ domain P40_10945 PF17804 Tail specific protease N-terminal domain P40_10950 PF07670 Nucleoside recognition P40_10960 PF01544 CorA-like Mg2+ transporter protein P40_10975 PF03883 Peroxide stress protein YaaA P40_10980 PF00582 Universal stress protein family P40_10985 PF00027 Cyclic nucleotide-binding domain P40_10985 PF13545 Crp-like helix-turn-helix domain P40_10990 PF04055 Radical SAM superfamily P40_10990 PF06969 HemN C-terminal domain P40_11005 PF00403 Heavy-metal-associated domain P40_11015 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase P40_11015 PF13746 4Fe-4S dicluster domain P40_11015 PF12801 4Fe-4S binding domain P40_11020 PF13442 Cytochrome C oxidase, cbb3-type, subunit III P40_11020 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP P40_11035 PF00115 Cytochrome C and Quinol oxidase polypeptide I P40_11045 PF00724 NADH:flavin oxidoreductase / NADH oxidase family P40_11045 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_11065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_11065 PF03466 LysR substrate binding domain P40_11070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_11070 PF03466 LysR substrate binding domain P40_11075 PF07690 Major Facilitator Superfamily P40_11095 PF16200 C-terminal region of band_7 P40_11095 PF01145 SPFH domain / Band 7 family P40_11100 PF00892 EamA-like transporter family P40_11110 PF02861 Clp amino terminal domain, pathogenicity island component P40_11110 PF10431 C-terminal, D2-small domain, of ClpB protein P40_11110 PF17871 AAA lid domain P40_11110 PF00004 ATPase family associated with various cellular activities (AAA) P40_11110 PF07724 AAA domain (Cdc48 subfamily) P40_11115 PF04452 RNA methyltransferase P40_11120 PF01479 S4 domain P40_11120 PF00849 RNA pseudouridylate synthase P40_11125 PF04079 Segregation and condensation complex subunit ScpB P40_11130 PF02616 Segregation and condensation protein ScpA P40_11135 PF00579 tRNA synthetases class I (W and Y) P40_11140 PF01300 Telomere recombination P40_11145 PF02811 PHP domain P40_11150 PF04279 Intracellular septation protein A P40_11155 PF03795 YCII-related domain P40_11170 PF02515 CoA-transferase family III P40_11175 PF01553 Acyltransferase P40_11190 PF13472 GDSL-like Lipase/Acylhydrolase family P40_11195 PF00005 ABC transporter P40_11205 PF07690 Major Facilitator Superfamily P40_11215 PF00376 MerR family regulatory protein P40_11215 PF09278 MerR, DNA binding P40_11220 PF02782 FGGY family of carbohydrate kinases, C-terminal domain P40_11220 PF00370 FGGY family of carbohydrate kinases, N-terminal domain P40_11225 PF16901 C-terminal domain of alpha-glycerophosphate oxidase P40_11225 PF01266 FAD dependent oxidoreductase P40_11230 PF02913 FAD linked oxidases, C-terminal domain P40_11230 PF01565 FAD binding domain P40_11235 PF00691 OmpA family P40_11235 PF13488 Glycine zipper P40_11240 PF07690 Major Facilitator Superfamily P40_11260 PF00561 alpha/beta hydrolase fold P40_11265 PF06803 Protein of unknown function (DUF1232) P40_11270 PF13614 AAA domain P40_11275 PF00067 Cytochrome P450 P40_11280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain P40_11280 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_11285 PF01645 Conserved region in glutamate synthase P40_11290 PF01464 Transglycosylase SLT domain P40_11300 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain P40_11300 PF02896 PEP-utilising enzyme, TIM barrel domain P40_11300 PF00391 PEP-utilising enzyme, mobile domain P40_11305 PF03618 Kinase/pyrophosphorylase P40_11320 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) P40_11325 PF03972 MmgE/PrpD family P40_11330 PF04303 PrpF protein P40_11335 PF00330 Aconitase family (aconitate hydratase) P40_11335 PF00694 Aconitase C-terminal domain P40_11340 PF00285 Citrate synthase, C-terminal domain P40_11350 PF07729 FCD domain P40_11350 PF00392 Bacterial regulatory proteins, gntR family P40_11360 PF04715 Anthranilate synthase component I, N terminal region P40_11360 PF00425 chorismate binding enzyme P40_11365 PF00929 Exonuclease P40_11370 PF00075 RNase H P40_11380 PF16123 Hydroxyacylglutathione hydrolase C-terminus P40_11380 PF00753 Metallo-beta-lactamase superfamily P40_11385 PF01464 Transglycosylase SLT domain P40_11385 PF01476 LysM domain P40_11390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle P40_11395 PF00528 Binding-protein-dependent transport system inner membrane component P40_11400 PF00528 Binding-protein-dependent transport system inner membrane component P40_11400 PF12911 N-terminal TM domain of oligopeptide transport permease C P40_11405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region P40_11405 PF00005 ABC transporter P40_11415 PF00149 Calcineurin-like phosphoesterase P40_11415 PF02872 5'-nucleotidase, C-terminal domain P40_11420 PF00639 PPIC-type PPIASE domain P40_11420 PF09312 SurA N-terminal domain P40_11430 PF00216 Bacterial DNA-binding protein P40_11435 PF00004 ATPase family associated with various cellular activities (AAA) P40_11435 PF05362 Lon protease (S16) C-terminal proteolytic domain P40_11435 PF02190 ATP-dependent protease La (LON) substrate-binding domain P40_11440 PF07724 AAA domain (Cdc48 subfamily) P40_11440 PF06689 ClpX C4-type zinc finger P40_11440 PF10431 C-terminal, D2-small domain, of ClpB protein P40_11445 PF00574 Clp protease P40_11450 PF05698 Bacterial trigger factor protein (TF) C-terminus P40_11450 PF05697 Bacterial trigger factor protein (TF) P40_11450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase P40_11470 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain P40_11470 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain P40_11475 PF13533 Biotin-lipoyl like P40_11485 PF04632 Fusaric acid resistance protein family P40_11490 PF07411 Domain of unknown function (DUF1508) P40_11495 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain P40_11495 PF00749 tRNA synthetases class I (E and Q), catalytic domain P40_11500 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD P40_11505 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD P40_11510 PF00149 Calcineurin-like phosphoesterase P40_11515 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) P40_11525 PF00440 Bacterial regulatory proteins, tetR family P40_11525 PF08361 MAATS-type transcriptional repressor, C-terminal region P40_11535 PF07690 Major Facilitator Superfamily P40_11540 PF11791 Aconitate B N-terminal domain P40_11540 PF06434 Aconitate hydratase 2 N-terminus P40_11540 PF00330 Aconitase family (aconitate hydratase) P40_11545 PF07690 Major Facilitator Superfamily P40_11560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_11560 PF03466 LysR substrate binding domain P40_11565 PF16347 Domain of unknown function (DUF4976) P40_11565 PF00884 Sulfatase P40_11570 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component P40_11590 PF03328 HpcH/HpaI aldolase/citrate lyase family P40_11595 PF03328 HpcH/HpaI aldolase/citrate lyase family P40_11600 PF02515 CoA-transferase family III P40_11610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_11610 PF02770 Acyl-CoA dehydrogenase, middle domain P40_11610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_11630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_11630 PF02770 Acyl-CoA dehydrogenase, middle domain P40_11630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_11635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_11635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_11635 PF02770 Acyl-CoA dehydrogenase, middle domain P40_11640 PF00378 Enoyl-CoA hydratase/isomerase P40_11645 PF13607 Succinyl-CoA ligase like flavodoxin domain P40_11645 PF00583 Acetyltransferase (GNAT) family P40_11645 PF13380 CoA binding domain P40_11650 PF02803 Thiolase, C-terminal domain P40_11650 PF00108 Thiolase, N-terminal domain P40_11660 PF07690 Major Facilitator Superfamily P40_11685 PF00534 Glycosyl transferases group 1 P40_11685 PF13439 Glycosyltransferase Family 4 P40_11690 PF06167 Glucose-regulated metallo-peptidase M90 P40_11715 PF07549 SecD/SecF GG Motif P40_11715 PF02355 Protein export membrane protein P40_11730 PF07715 TonB-dependent Receptor Plug Domain P40_11730 PF00593 TonB dependent receptor P40_11745 PF00270 DEAD/DEAH box helicase P40_11745 PF08482 ATP-dependent helicase C-terminal P40_11745 PF00271 Helicase conserved C-terminal domain P40_11745 PF04408 Helicase associated domain (HA2) P40_11750 PF03466 LysR substrate binding domain P40_11750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_11760 PF00043 Glutathione S-transferase, C-terminal domain P40_11760 PF02798 Glutathione S-transferase, N-terminal domain P40_11765 PF03466 LysR substrate binding domain P40_11765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_11770 PF05199 GMC oxidoreductase P40_11785 PF00005 ABC transporter P40_11785 PF03459 TOBE domain P40_11790 PF00528 Binding-protein-dependent transport system inner membrane component P40_11805 PF01722 BolA-like protein P40_11810 PF00135 Carboxylesterase family P40_11820 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain P40_11820 PF00056 lactate/malate dehydrogenase, NAD binding domain P40_11825 PF00571 CBS domain P40_11830 PF03737 Aldolase/RraA P40_11835 PF13460 NAD(P)H-binding P40_11840 PF00072 Response regulator receiver domain P40_11840 PF01627 Hpt domain P40_11840 PF00512 His Kinase A (phospho-acceptor) domain P40_11840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_11840 PF00672 HAMP domain P40_11840 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) P40_11845 PF09278 MerR, DNA binding P40_11845 PF00376 MerR family regulatory protein P40_11850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_11850 PF02770 Acyl-CoA dehydrogenase, middle domain P40_11850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_11855 PF01039 Carboxyl transferase domain P40_11860 PF00378 Enoyl-CoA hydratase/isomerase P40_11865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain P40_11865 PF00364 Biotin-requiring enzyme P40_11865 PF00289 Biotin carboxylase, N-terminal domain P40_11865 PF02785 Biotin carboxylase C-terminal domain P40_11870 PF00501 AMP-binding enzyme P40_11870 PF13193 AMP-binding enzyme C-terminal domain P40_11885 PF03061 Thioesterase superfamily P40_11895 PF05199 GMC oxidoreductase P40_11895 PF00732 GMC oxidoreductase P40_11920 PF17657 Bacterial DNA polymerase III alpha subunit finger domain P40_11920 PF07733 Bacterial DNA polymerase III alpha NTPase domain P40_11920 PF14579 Helix-hairpin-helix motif P40_11920 PF02811 PHP domain P40_11920 PF01336 OB-fold nucleic acid binding domain P40_11935 PF00749 tRNA synthetases class I (E and Q), catalytic domain P40_11945 PF00582 Universal stress protein family P40_11950 PF01740 STAS domain P40_11950 PF00916 Sulfate permease family P40_11955 PF01207 Dihydrouridine synthase (Dus) P40_11960 PF00923 Transaldolase/Fructose-6-phosphate aldolase P40_11980 PF05114 Protein of unknown function (DUF692) P40_12000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_12000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_12000 PF02770 Acyl-CoA dehydrogenase, middle domain P40_12005 PF00378 Enoyl-CoA hydratase/isomerase P40_12010 PF13193 AMP-binding enzyme C-terminal domain P40_12010 PF00501 AMP-binding enzyme P40_12035 PF00171 Aldehyde dehydrogenase family P40_12040 PF08240 Alcohol dehydrogenase GroES-like domain P40_12040 PF00107 Zinc-binding dehydrogenase P40_12045 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III P40_12045 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal P40_12050 PF11898 Domain of unknown function (DUF3418) P40_12050 PF00270 DEAD/DEAH box helicase P40_12050 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold P40_12050 PF04408 Helicase associated domain (HA2) P40_12050 PF00271 Helicase conserved C-terminal domain P40_12065 PF01464 Transglycosylase SLT domain P40_12065 PF00497 Bacterial extracellular solute-binding proteins, family 3 P40_12075 PF05736 OprF membrane domain P40_12075 PF00691 OmpA family P40_12090 PF01625 Peptide methionine sulfoxide reductase P40_12095 PF01641 SelR domain P40_12100 PF07690 Major Facilitator Superfamily P40_12105 PF03061 Thioesterase superfamily P40_12125 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system P40_12130 PF01258 Prokaryotic dksA/traR C4-type zinc finger P40_12135 PF00593 TonB dependent receptor P40_12135 PF07715 TonB-dependent Receptor Plug Domain P40_12140 PF02514 CobN/Magnesium Chelatase P40_12140 PF11965 Domain of unknown function (DUF3479) P40_12160 PF00072 Response regulator receiver domain P40_12165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_12165 PF00512 His Kinase A (phospho-acceptor) domain P40_12180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion P40_12180 PF00529 HlyD membrane-fusion protein of T1SS P40_12185 PF00873 AcrB/AcrD/AcrF family P40_12210 PF04231 Endonuclease I P40_12215 PF07729 FCD domain P40_12215 PF00392 Bacterial regulatory proteins, gntR family P40_12220 PF00682 HMGL-like P40_12220 PF08502 LeuA allosteric (dimerisation) domain P40_12240 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) P40_12245 PF13205 Bacterial Ig-like domain P40_12285 PF05016 ParE toxin of type II toxin-antitoxin system, parDE P40_12320 PF12706 Beta-lactamase superfamily domain P40_12325 PF03070 TENA/THI-4/PQQC family P40_12330 PF05402 Coenzyme PQQ synthesis protein D (PqqD) P40_12335 PF04055 Radical SAM superfamily P40_12335 PF13186 Iron-sulfur cluster-binding domain P40_12345 PF00675 Insulinase (Peptidase family M16) P40_12350 PF02798 Glutathione S-transferase, N-terminal domain P40_12360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_12360 PF03466 LysR substrate binding domain P40_12375 PF00072 Response regulator receiver domain P40_12375 PF00486 Transcriptional regulatory protein, C terminal P40_12380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_12380 PF00512 His Kinase A (phospho-acceptor) domain P40_12380 PF18719 ArlS sensor domain P40_12415 PF04717 Type VI secretion system, phage-baseplate injector P40_12415 PF16671 Actin cross-linking domain P40_12420 PF07729 FCD domain P40_12420 PF00392 Bacterial regulatory proteins, gntR family P40_12425 PF02652 L-lactate permease P40_12430 PF02754 Cysteine-rich domain P40_12435 PF11870 Domain of unknown function (DUF3390) P40_12435 PF13183 4Fe-4S dicluster domain P40_12435 PF02589 LUD domain P40_12440 PF02589 LUD domain P40_12465 PF01381 Helix-turn-helix P40_12470 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) P40_12545 PF00581 Rhodanese-like domain P40_12560 PF03974 Ecotin P40_12570 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) P40_12575 PF13205 Bacterial Ig-like domain P40_12595 PF00296 Luciferase-like monooxygenase P40_12600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_12600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_12600 PF02770 Acyl-CoA dehydrogenase, middle domain P40_12605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_12605 PF02770 Acyl-CoA dehydrogenase, middle domain P40_12605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_12610 PF00378 Enoyl-CoA hydratase/isomerase P40_12615 PF00378 Enoyl-CoA hydratase/isomerase P40_12620 PF00392 Bacterial regulatory proteins, gntR family P40_12620 PF07729 FCD domain P40_12625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_12625 PF02770 Acyl-CoA dehydrogenase, middle domain P40_12625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_12630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_12630 PF02770 Acyl-CoA dehydrogenase, middle domain P40_12630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_12640 PF02515 CoA-transferase family III P40_12645 PF00005 ABC transporter P40_12650 PF12399 Branched-chain amino acid ATP-binding cassette transporter P40_12650 PF00005 ABC transporter P40_12670 PF13193 AMP-binding enzyme C-terminal domain P40_12670 PF00501 AMP-binding enzyme P40_12680 PF05099 Tellurite resistance protein TerB P40_12680 PF00226 DnaJ domain P40_12685 PF01261 Xylose isomerase-like TIM barrel P40_12690 PF03239 Iron permease FTR1 family P40_12700 PF00155 Aminotransferase class I and II P40_12705 PF17785 PUA-like domain P40_12705 PF10672 S-adenosylmethionine-dependent methyltransferase P40_12710 PF01435 Peptidase family M48 P40_12715 PF00072 Response regulator receiver domain P40_12715 PF00990 Diguanylate cyclase, GGDEF domain P40_12730 PF01841 Transglutaminase-like superfamily P40_12730 PF13559 Domain of unknown function (DUF4129) P40_12730 PF11992 Domain of unknown function (DUF3488) P40_12740 PF17863 AAA lid domain P40_12740 PF07726 ATPase family associated with various cellular activities (AAA) P40_12745 PF01053 Cys/Met metabolism PLP-dependent enzyme P40_12750 PF00156 Phosphoribosyl transferase domain P40_12755 PF02674 Colicin V production protein P40_12765 PF08245 Mur ligase middle domain P40_12765 PF02875 Mur ligase family, glutamate ligase domain P40_12770 PF17848 Acetyl-coA carboxylase zinc finger domain P40_12770 PF01039 Carboxyl transferase domain P40_12775 PF00290 Tryptophan synthase alpha chain P40_12780 PF00291 Pyridoxal-phosphate dependent enzyme P40_12785 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase P40_12790 PF01416 tRNA pseudouridine synthase P40_12800 PF01118 Semialdehyde dehydrogenase, NAD binding domain P40_12800 PF02774 Semialdehyde dehydrogenase, dimerisation domain P40_12805 PF01118 Semialdehyde dehydrogenase, NAD binding domain P40_12805 PF02774 Semialdehyde dehydrogenase, dimerisation domain P40_12810 PF00180 Isocitrate/isopropylmalate dehydrogenase P40_12815 PF00694 Aconitase C-terminal domain P40_12820 PF00330 Aconitase family (aconitate hydratase) P40_12825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_12830 PF01264 Chorismate synthase P40_12835 PF05175 Methyltransferase small domain P40_12850 PF00375 Sodium:dicarboxylate symporter family P40_12865 PF03435 Saccharopine dehydrogenase NADP binding domain P40_12875 PF00561 alpha/beta hydrolase fold P40_12885 PF03372 Endonuclease/Exonuclease/phosphatase family P40_12900 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus P40_12900 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus P40_12905 PF00183 Hsp90 protein P40_12910 PF01370 NAD dependent epimerase/dehydratase family P40_12910 PF08338 Domain of unknown function (DUF1731) P40_12935 PF13302 Acetyltransferase (GNAT) domain P40_12940 PF02548 Ketopantoate hydroxymethyltransferase P40_12945 PF00144 Beta-lactamase P40_12950 PF02629 CoA binding domain P40_12950 PF00549 CoA-ligase P40_12955 PF00549 CoA-ligase P40_12955 PF08442 ATP-grasp domain P40_12960 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_12960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain P40_12965 PF02817 e3 binding domain P40_12965 PF00364 Biotin-requiring enzyme P40_12965 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) P40_12970 PF02779 Transketolase, pyrimidine binding domain P40_12970 PF16870 2-oxoglutarate dehydrogenase C-terminal P40_12970 PF16078 2-oxoglutarate dehydrogenase N-terminus P40_12970 PF00676 Dehydrogenase E1 component P40_12975 PF13085 2Fe-2S iron-sulfur cluster binding domain P40_12980 PF02910 Fumarate reductase flavoprotein C-term P40_12980 PF00890 FAD binding domain P40_12985 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit P40_12990 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit P40_12995 PF00285 Citrate synthase, C-terminal domain P40_13015 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase P40_13015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase P40_13035 PF01266 FAD dependent oxidoreductase P40_13045 PF08379 Bacterial transglutaminase-like N-terminal region P40_13045 PF01841 Transglutaminase-like superfamily P40_13050 PF14403 Circularly permuted ATP-grasp type 2 P40_13050 PF04168 A predicted alpha-helical domain with a conserved ER motif. P40_13055 PF14403 Circularly permuted ATP-grasp type 2 P40_13060 PF01012 Electron transfer flavoprotein domain P40_13060 PF00766 Electron transfer flavoprotein FAD-binding domain P40_13065 PF01012 Electron transfer flavoprotein domain P40_13080 PF03466 LysR substrate binding domain P40_13080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_13085 PF00795 Carbon-nitrogen hydrolase P40_13085 PF00583 Acetyltransferase (GNAT) family P40_13095 PF02146 Sir2 family P40_13100 PF00793 DAHP synthetase I family P40_13110 PF00027 Cyclic nucleotide-binding domain P40_13110 PF00520 Ion transport protein P40_13115 PF13806 Rieske-like [2Fe-2S] domain P40_13120 PF13806 Rieske-like [2Fe-2S] domain P40_13120 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_13120 PF01077 Nitrite and sulphite reductase 4Fe-4S domain P40_13120 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain P40_13120 PF18267 Rubredoxin NAD+ reductase C-terminal domain P40_13120 PF04324 BFD-like [2Fe-2S] binding domain P40_13130 PF00440 Bacterial regulatory proteins, tetR family P40_13150 PF02646 RmuC family P40_13155 PF01026 TatD related DNase P40_13165 PF09115 DNA polymerase III, delta subunit, C terminal P40_13170 PF02223 Thymidylate kinase P40_13175 PF02618 YceG-like family P40_13180 PF01063 Amino-transferase class IV P40_13185 PF02801 Beta-ketoacyl synthase, C-terminal domain P40_13185 PF00109 Beta-ketoacyl synthase, N-terminal domain P40_13190 PF00550 Phosphopantetheine attachment site P40_13200 PF00698 Acyl transferase domain P40_13205 PF02504 Fatty acid synthesis protein P40_13210 PF01783 Ribosomal L32p protein family P40_13220 PF02545 Maf-like protein P40_13225 PF01343 Peptidase family S49 P40_13225 PF06965 Na+/H+ antiporter 1 P40_13230 PF13419 Haloacid dehalogenase-like hydrolase P40_13235 PF01479 S4 domain P40_13235 PF00849 RNA pseudouridylate synthase P40_13240 PF00575 S1 RNA binding domain P40_13240 PF10150 Ribonuclease E/G family P40_13240 PF12111 Polyribonucleotide phosphorylase C terminal P40_13250 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain P40_13250 PF01565 FAD binding domain P40_13255 PF01451 Low molecular weight phosphotyrosine protein phosphatase P40_13260 PF02348 Cytidylyltransferase P40_13265 PF02606 Tetraacyldisaccharide-1-P 4'-kinase P40_13270 PF00664 ABC transporter transmembrane region P40_13270 PF00005 ABC transporter P40_13275 PF02472 Biopolymer transport protein ExbD/TolR P40_13280 PF01618 MotA/TolQ/ExbB proton channel family P40_13285 PF00753 Metallo-beta-lactamase superfamily P40_13285 PF03772 Competence protein P40_13295 PF04315 Elongation factor P hydroxylase P40_13300 PF01554 MatE P40_13315 PF00873 AcrB/AcrD/AcrF family P40_13340 PF01206 Sulfurtransferase TusA P40_13345 PF07690 Major Facilitator Superfamily P40_13350 PF01728 FtsJ-like methyltransferase P40_13350 PF18125 RlmM ferredoxin-like domain P40_13355 PF00551 Formyl transferase P40_13355 PF01842 ACT domain P40_13360 PF12833 Helix-turn-helix domain P40_13365 PF00440 Bacterial regulatory proteins, tetR family P40_13365 PF13977 BetI-type transcriptional repressor, C-terminal P40_13375 PF00005 ABC transporter P40_13390 PF07715 TonB-dependent Receptor Plug Domain P40_13390 PF00593 TonB dependent receptor P40_13410 PF02321 Outer membrane efflux protein P40_13415 PF00529 HlyD membrane-fusion protein of T1SS P40_13420 PF00664 ABC transporter transmembrane region P40_13420 PF00005 ABC transporter P40_13440 PF00593 TonB dependent receptor P40_13440 PF07715 TonB-dependent Receptor Plug Domain P40_13445 PF16220 Domain of unknown function (DUF4880) P40_13445 PF04773 FecR protein P40_13450 PF08281 Sigma-70, region 4 P40_13450 PF04542 Sigma-70 region 2 P40_13455 PF00378 Enoyl-CoA hydratase/isomerase P40_13460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_13460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_13460 PF02770 Acyl-CoA dehydrogenase, middle domain P40_13465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_13465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_13465 PF02770 Acyl-CoA dehydrogenase, middle domain P40_13485 PF16868 NMT1-like family P40_13490 PF13380 CoA binding domain P40_13490 PF13607 Succinyl-CoA ligase like flavodoxin domain P40_13490 PF00583 Acetyltransferase (GNAT) family P40_13495 PF16868 NMT1-like family P40_13520 PF00210 Ferritin-like domain P40_13525 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain P40_13525 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain P40_13525 PF00378 Enoyl-CoA hydratase/isomerase P40_13530 PF00108 Thiolase, N-terminal domain P40_13530 PF02803 Thiolase, C-terminal domain P40_13540 PF02777 Iron/manganese superoxide dismutases, C-terminal domain P40_13540 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain P40_13550 PF01713 Smr domain P40_13555 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain P40_13555 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_13560 PF00308 Bacterial dnaA protein P40_13570 PF02769 AIR synthase related protein, C-terminal domain P40_13570 PF00586 AIR synthase related protein, N-terminal domain P40_13575 PF00551 Formyl transferase P40_13590 PF00692 dUTPase P40_13595 PF10609 NUBPL iron-transfer P-loop NTPase P40_13610 PF00578 AhpC/TSA family P40_13610 PF10417 C-terminal domain of 1-Cys peroxiredoxin P40_13650 PF02634 FdhD/NarQ family P40_13655 PF01068 ATP dependent DNA ligase domain P40_13655 PF14743 DNA ligase OB-like domain P40_13660 PF01370 NAD dependent epimerase/dehydratase family P40_13665 PF05175 Methyltransferase small domain P40_13665 PF08468 Methyltransferase small domain N-terminal P40_13670 PF01464 Transglycosylase SLT domain P40_13670 PF14718 Soluble lytic murein transglycosylase L domain P40_13715 PF01627 Hpt domain P40_13715 PF00512 His Kinase A (phospho-acceptor) domain P40_13715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_13715 PF00072 Response regulator receiver domain P40_13715 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) P40_13715 PF00672 HAMP domain P40_13720 PF01588 Putative tRNA binding domain P40_13720 PF09334 tRNA synthetases class I (M) P40_13735 PF02508 Rnf-Nqr subunit, membrane protein P40_13740 PF04060 Putative Fe-S cluster P40_13745 PF12838 4Fe-4S dicluster domain P40_13745 PF13375 RnfC Barrel sandwich hybrid domain P40_13745 PF10531 SLBB domain P40_13745 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit P40_13750 PF03116 NQR2, RnfD, RnfE family P40_13755 PF04205 FMN-binding domain P40_13760 PF02508 Rnf-Nqr subunit, membrane protein P40_13770 PF03616 Sodium/glutamate symporter P40_13775 PF00730 HhH-GPD superfamily base excision DNA repair protein P40_13775 PF00633 Helix-hairpin-helix motif P40_13775 PF10576 Iron-sulfur binding domain of endonuclease III P40_13780 PF10531 SLBB domain P40_13785 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family P40_13790 PF18073 Rubredoxin metal binding domain P40_13800 PF00216 Bacterial DNA-binding protein P40_13805 PF00575 S1 RNA binding domain P40_13810 PF02224 Cytidylate kinase P40_13815 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) P40_13820 PF00155 Aminotransferase class I and II P40_13825 PF01842 ACT domain P40_13825 PF01817 Chorismate mutase type II P40_13825 PF00800 Prephenate dehydratase P40_13830 PF00266 Aminotransferase class-V P40_13835 PF03989 DNA gyrase C-terminal domain, beta-propeller P40_13835 PF00521 DNA gyrase/topoisomerase IV, subunit A P40_13840 PF01979 Amidohydrolase family P40_13850 PF13419 Haloacid dehalogenase-like hydrolase P40_13855 PF00106 short chain dehydrogenase P40_13870 PF03109 ABC1 family P40_13900 PF01209 ubiE/COQ5 methyltransferase family P40_13905 PF01230 HIT domain P40_13915 PF03692 Putative zinc- or iron-chelating domain P40_13920 PF05166 YcgL domain P40_13925 PF00570 HRDC domain P40_13925 PF01612 3'-5' exonuclease P40_13930 PF00300 Histidine phosphatase superfamily (branch 1) P40_13940 PF00561 alpha/beta hydrolase fold P40_13950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_13950 PF02770 Acyl-CoA dehydrogenase, middle domain P40_13950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_13955 PF00465 Iron-containing alcohol dehydrogenase P40_13960 PF13662 Toprim domain P40_13960 PF02132 RecR protein P40_13965 PF02575 YbaB/EbfC DNA-binding family P40_13970 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding P40_13970 PF12169 DNA polymerase III subunits gamma and tau domain III P40_13970 PF12170 DNA polymerase III tau subunit V interacting with alpha P40_13980 PF00011 Hsp20/alpha crystallin family P40_13990 PF10722 Putative bacterial sensory transduction regulator P40_14000 PF10400 Virulence activator alpha C-term P40_14000 PF03551 Transcriptional regulator PadR-like family P40_14020 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain P40_14020 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain P40_14035 PF00005 ABC transporter P40_14045 PF02492 CobW/HypB/UreG, nucleotide-binding domain P40_14045 PF07683 Cobalamin synthesis protein cobW C-terminal domain P40_14050 PF01979 Amidohydrolase family P40_14075 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component P40_14080 PF13193 AMP-binding enzyme C-terminal domain P40_14080 PF00501 AMP-binding enzyme P40_14090 PF01323 DSBA-like thioredoxin domain P40_14095 PF00083 Sugar (and other) transporter P40_14095 PF07690 Major Facilitator Superfamily P40_14100 PF00596 Class II Aldolase and Adducin N-terminal domain P40_14105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_14105 PF03466 LysR substrate binding domain P40_14110 PF02803 Thiolase, C-terminal domain P40_14110 PF00108 Thiolase, N-terminal domain P40_14120 PF00501 AMP-binding enzyme P40_14120 PF13193 AMP-binding enzyme C-terminal domain P40_14125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_14125 PF00512 His Kinase A (phospho-acceptor) domain P40_14125 PF00989 PAS fold P40_14130 PF00196 Bacterial regulatory proteins, luxR family P40_14130 PF00072 Response regulator receiver domain P40_14135 PF03466 LysR substrate binding domain P40_14135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_14145 PF01077 Nitrite and sulphite reductase 4Fe-4S domain P40_14145 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain P40_14165 PF03060 Nitronate monooxygenase P40_14170 PF04343 Protein of unknown function, DUF488 P40_14185 PF01548 Transposase P40_14185 PF02371 Transposase IS116/IS110/IS902 family P40_14190 PF02322 Cytochrome bd terminal oxidase subunit II P40_14195 PF01654 Cytochrome bd terminal oxidase subunit I P40_14200 PF00005 ABC transporter P40_14200 PF00664 ABC transporter transmembrane region P40_14205 PF00664 ABC transporter transmembrane region P40_14205 PF00005 ABC transporter P40_14230 PF04055 Radical SAM superfamily P40_14240 PF07690 Major Facilitator Superfamily P40_14245 PF00384 Molybdopterin oxidoreductase P40_14245 PF01568 Molydopterin dinucleotide binding domain P40_14245 PF14710 Respiratory nitrate reductase alpha N-terminal P40_14250 PF13247 4Fe-4S dicluster domain P40_14250 PF14711 Respiratory nitrate reductase beta C-terminal P40_14255 PF02613 Nitrate reductase delta subunit P40_14260 PF02665 Nitrate reductase gamma subunit P40_14265 PF09312 SurA N-terminal domain P40_14280 PF03449 Transcription elongation factor, N-terminal P40_14280 PF01272 Transcription elongation factor, GreA/GreB, C-term P40_14290 PF02082 Transcriptional regulator P40_14295 PF02082 Transcriptional regulator P40_14310 PF00115 Cytochrome C and Quinol oxidase polypeptide I P40_14315 PF00793 DAHP synthetase I family P40_14320 PF02203 Tar ligand binding domain homologue P40_14320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain P40_14320 PF00672 HAMP domain P40_14355 PF02599 Global regulator protein family P40_14360 PF13840 ACT domain P40_14360 PF01842 ACT domain P40_14360 PF00696 Amino acid kinase family P40_14365 PF01411 tRNA synthetases class II (A) P40_14365 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain P40_14365 PF02272 DHHA1 domain P40_14370 PF01925 Sulfite exporter TauE/SafE P40_14380 PF02631 RecX family P40_14385 PF00154 recA bacterial DNA recombination protein P40_14390 PF02464 Competence-damaged protein P40_14400 PF01979 Amidohydrolase family P40_14455 PF07715 TonB-dependent Receptor Plug Domain P40_14455 PF00593 TonB dependent receptor P40_14465 PF01118 Semialdehyde dehydrogenase, NAD binding domain P40_14470 PF00970 Oxidoreductase FAD-binding domain P40_14470 PF00175 Oxidoreductase NAD-binding domain P40_14470 PF00042 Globin P40_14480 PF00378 Enoyl-CoA hydratase/isomerase P40_14490 PF00501 AMP-binding enzyme P40_14490 PF13193 AMP-binding enzyme C-terminal domain P40_14495 PF05188 MutS domain II P40_14495 PF01624 MutS domain I P40_14495 PF05190 MutS family domain IV P40_14495 PF00488 MutS domain V P40_14495 PF05192 MutS domain III P40_14500 PF11953 Domain of unknown function (DUF3470) P40_14500 PF00037 4Fe-4S binding domain P40_14540 PF13091 PLD-like domain P40_14550 PF00155 Aminotransferase class I and II P40_14550 PF00392 Bacterial regulatory proteins, gntR family P40_14560 PF17946 RecC C-terminal domain P40_14565 PF13361 UvrD-like helicase C-terminal domain P40_14565 PF00580 UvrD/REP helicase N-terminal domain P40_14565 PF12705 PD-(D/E)XK nuclease superfamily P40_14570 PF13538 UvrD-like helicase C-terminal domain P40_14575 PF05736 OprF membrane domain P40_14575 PF00691 OmpA family P40_14580 PF07027 Protein of unknown function (DUF1318) P40_14585 PF13617 YnbE-like lipoprotein P40_14610 PF04221 RelB antitoxin P40_14710 PF04002 RadC-like JAB domain P40_14735 PF01527 Transposase P40_14740 PF13276 HTH-like domain P40_14740 PF13683 Integrase core domain P40_14745 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_14745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain P40_14745 PF00403 Heavy-metal-associated domain P40_14760 PF00403 Heavy-metal-associated domain P40_14765 PF02411 MerT mercuric transport protein P40_14770 PF09278 MerR, DNA binding P40_14770 PF00376 MerR family regulatory protein P40_14785 PF04945 YHS domain P40_14805 PF07732 Multicopper oxidase P40_14805 PF00394 Multicopper oxidase P40_14805 PF07731 Multicopper oxidase P40_14815 PF00486 Transcriptional regulatory protein, C terminal P40_14815 PF00072 Response regulator receiver domain P40_14820 PF00072 Response regulator receiver domain P40_14820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_14820 PF09308 LuxQ, periplasmic P40_14820 PF00512 His Kinase A (phospho-acceptor) domain P40_14825 PF04002 RadC-like JAB domain P40_14875 PF01252 Signal peptidase (SPase) II P40_14885 PF13411 MerR HTH family regulatory protein P40_14915 PF00665 Integrase core domain P40_14920 PF01527 Transposase P40_14940 PF13411 MerR HTH family regulatory protein P40_14945 PF00216 Bacterial DNA-binding protein P40_14950 PF01588 Putative tRNA binding domain P40_14950 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain P40_14950 PF03484 tRNA synthetase B5 domain P40_14950 PF03483 B3/4 domain P40_14950 PF03147 Ferredoxin-fold anticodon binding domain P40_14955 PF01409 tRNA synthetases class II core domain (F) P40_14955 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain P40_14960 PF00453 Ribosomal protein L20 P40_14965 PF01632 Ribosomal protein L35 P40_14970 PF00707 Translation initiation factor IF-3, C-terminal domain P40_14970 PF05198 Translation initiation factor IF-3, N-terminal domain P40_14985 PF07729 FCD domain P40_14985 PF00392 Bacterial regulatory proteins, gntR family P40_14995 PF01654 Cytochrome bd terminal oxidase subunit I P40_15000 PF02322 Cytochrome bd terminal oxidase subunit II P40_15005 PF01259 SAICAR synthetase P40_15010 PF00753 Metallo-beta-lactamase superfamily P40_15020 PF00701 Dihydrodipicolinate synthetase family P40_15030 PF00578 AhpC/TSA family P40_15035 PF01594 AI-2E family transporter P40_15040 PF01206 Sulfurtransferase TusA P40_15045 PF01435 Peptidase family M48 P40_15050 PF02445 Quinolinate synthetase A protein P40_15060 PF06508 Queuosine biosynthesis protein QueC P40_15065 PF04055 Radical SAM superfamily P40_15075 PF00691 OmpA family P40_15080 PF04052 TolB amino-terminal domain P40_15080 PF07676 WD40-like Beta Propeller Repeat P40_15090 PF02472 Biopolymer transport protein ExbD/TolR P40_15095 PF01618 MotA/TolQ/ExbB proton channel family P40_15100 PF03061 Thioesterase superfamily P40_15105 PF17864 RuvB AAA lid domain P40_15105 PF05491 RuvB C-terminal winged helix domain P40_15105 PF05496 Holliday junction DNA helicase RuvB P-loop domain P40_15110 PF07499 RuvA, C-terminal domain P40_15110 PF01330 RuvA N terminal domain P40_15115 PF02075 Crossover junction endodeoxyribonuclease RuvC P40_15120 PF01709 Transcriptional regulator P40_15125 PF01336 OB-fold nucleic acid binding domain P40_15125 PF00152 tRNA synthetases class II (D, K and N) P40_15125 PF02938 GAD domain P40_15145 PF00072 Response regulator receiver domain P40_15150 PF17243 POTRA domain TamA domain 1 P40_15150 PF01103 Surface antigen P40_15155 PF04357 TamB, inner membrane protein subunit of TAM complex P40_15165 PF04073 Aminoacyl-tRNA editing domain P40_15165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) P40_15165 PF03129 Anticodon binding domain P40_15175 PF13614 AAA domain P40_15180 PF02770 Acyl-CoA dehydrogenase, middle domain P40_15180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_15180 PF18158 Adaptive response protein AidB N-terminal domain P40_15185 PF00440 Bacterial regulatory proteins, tetR family P40_15185 PF16295 Tetracyclin repressor-like, C-terminal domain P40_15195 PF16124 RecQ zinc-binding P40_15195 PF09382 RQC domain P40_15195 PF00570 HRDC domain P40_15195 PF00271 Helicase conserved C-terminal domain P40_15195 PF00270 DEAD/DEAH box helicase P40_15210 PF00271 Helicase conserved C-terminal domain P40_15210 PF00270 DEAD/DEAH box helicase P40_15220 PF00501 AMP-binding enzyme P40_15220 PF13193 AMP-binding enzyme C-terminal domain P40_15220 PF16177 Acetyl-coenzyme A synthetase N-terminus P40_15235 PF10503 Esterase PHB depolymerase P40_15250 PF08443 RimK-like ATP-grasp domain P40_15250 PF18030 RimK PreATP-grasp domain P40_15255 PF18030 RimK PreATP-grasp domain P40_15255 PF08443 RimK-like ATP-grasp domain P40_15260 PF00764 Arginosuccinate synthase P40_15265 PF00929 Exonuclease P40_15280 PF10417 C-terminal domain of 1-Cys peroxiredoxin P40_15280 PF00578 AhpC/TSA family P40_15285 PF00462 Glutaredoxin P40_15300 PF00202 Aminotransferase class-III P40_15305 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain P40_15305 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain P40_15310 PF08402 TOBE domain P40_15310 PF00005 ABC transporter P40_15315 PF00990 Diguanylate cyclase, GGDEF domain P40_15315 PF00072 Response regulator receiver domain P40_15320 PF00990 Diguanylate cyclase, GGDEF domain P40_15320 PF17151 Periplasmic sensor domain P40_15325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain P40_15325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain P40_15330 PF00512 His Kinase A (phospho-acceptor) domain P40_15330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_15330 PF00672 HAMP domain P40_15335 PF00486 Transcriptional regulatory protein, C terminal P40_15335 PF00072 Response regulator receiver domain P40_15340 PF00317 Ribonucleotide reductase, all-alpha domain P40_15340 PF02867 Ribonucleotide reductase, barrel domain P40_15340 PF03477 ATP cone domain P40_15345 PF00268 Ribonucleotide reductase, small chain P40_15355 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain P40_15355 PF00205 Thiamine pyrophosphate enzyme, central domain P40_15355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain P40_15370 PF02254 TrkA-N domain P40_15370 PF00999 Sodium/hydrogen exchanger family P40_15385 PF04116 Fatty acid hydroxylase superfamily P40_15390 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component P40_15405 PF07976 Phenol hydroxylase, C-terminal dimerisation domain P40_15405 PF01494 FAD binding domain P40_15415 PF01557 Fumarylacetoacetate (FAA) hydrolase family P40_15420 PF01557 Fumarylacetoacetate (FAA) hydrolase family P40_15425 PF00171 Aldehyde dehydrogenase family P40_15430 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase P40_15435 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase P40_15445 PF03328 HpcH/HpaI aldolase/citrate lyase family P40_15450 PF12706 Beta-lactamase superfamily domain P40_15450 PF00753 Metallo-beta-lactamase superfamily P40_15455 PF00171 Aldehyde dehydrogenase family P40_15460 PF01047 MarR family P40_15465 PF13458 Periplasmic binding protein P40_15470 PF03741 Integral membrane protein TerC family P40_15475 PF00694 Aconitase C-terminal domain P40_15475 PF00330 Aconitase family (aconitate hydratase) P40_15485 PF00528 Binding-protein-dependent transport system inner membrane component P40_15495 PF00005 ABC transporter P40_15495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region P40_15500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region P40_15500 PF00005 ABC transporter P40_15505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle P40_15510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_15510 PF03466 LysR substrate binding domain P40_15515 PF03601 Conserved hypothetical protein 698 P40_15520 PF00072 Response regulator receiver domain P40_15520 PF00196 Bacterial regulatory proteins, luxR family P40_15545 PF03358 NADPH-dependent FMN reductase P40_15555 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component P40_15575 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease P40_15575 PF01694 Rhomboid family P40_15585 PF09285 Elongation factor P, C-terminal P40_15585 PF01132 Elongation factor P (EF-P) OB domain P40_15585 PF08207 Elongation factor P (EF-P) KOW-like domain P40_15595 PF01553 Acyltransferase P40_15605 PF09084 NMT1/THI5 like P40_15615 PF03466 LysR substrate binding domain P40_15615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_15620 PF00857 Isochorismatase family P40_15635 PF01979 Amidohydrolase family P40_15640 PF00005 ABC transporter P40_15650 PF03641 Possible lysine decarboxylase P40_15660 PF01738 Dienelactone hydrolase family P40_15665 PF00311 Phosphoenolpyruvate carboxylase P40_15680 PF01494 FAD binding domain P40_15685 PF11798 IMS family HHH motif P40_15685 PF00817 impB/mucB/samB family P40_15690 PF11892 Domain of unknown function (DUF3412) P40_15690 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases P40_15690 PF03641 Possible lysine decarboxylase P40_15700 PF00106 short chain dehydrogenase P40_15705 PF03781 Sulfatase-modifying factor enzyme 1 P40_15705 PF12867 DinB superfamily P40_15710 PF10017 Histidine-specific methyltransferase, SAM-dependent P40_15735 PF07282 Putative transposase DNA-binding domain P40_15735 PF01385 Probable transposase P40_15735 PF12323 Helix-turn-helix domain P40_15740 PF04199 Putative cyclase P40_15745 PF01475 Ferric uptake regulator family P40_15750 PF07683 Cobalamin synthesis protein cobW C-terminal domain P40_15750 PF02492 CobW/HypB/UreG, nucleotide-binding domain P40_15755 PF02770 Acyl-CoA dehydrogenase, middle domain P40_15755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_15755 PF18158 Adaptive response protein AidB N-terminal domain P40_15760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_15760 PF03466 LysR substrate binding domain P40_15765 PF07690 Major Facilitator Superfamily P40_15770 PF00893 Small Multidrug Resistance protein P40_15775 PF02525 Flavodoxin-like fold P40_15780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_15780 PF03466 LysR substrate binding domain P40_15790 PF16656 Purple acid Phosphatase, N-terminal domain P40_15790 PF00149 Calcineurin-like phosphoesterase P40_15815 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain P40_15815 PF02777 Iron/manganese superoxide dismutases, C-terminal domain P40_15820 PF00108 Thiolase, N-terminal domain P40_15820 PF02803 Thiolase, C-terminal domain P40_15825 PF00109 Beta-ketoacyl synthase, N-terminal domain P40_15825 PF02801 Beta-ketoacyl synthase, C-terminal domain P40_15830 PF13360 PQQ-like domain P40_15850 PF03641 Possible lysine decarboxylase P40_15855 PF01258 Prokaryotic dksA/traR C4-type zinc finger P40_15865 PF13193 AMP-binding enzyme C-terminal domain P40_15865 PF00501 AMP-binding enzyme P40_15870 PF00463 Isocitrate lyase family P40_15880 PF16658 Class II release factor RF3, C-terminal domain P40_15880 PF00009 Elongation factor Tu GTP binding domain P40_15880 PF03144 Elongation factor Tu domain 2 P40_15885 PF04545 Sigma-70, region 4 P40_15885 PF04542 Sigma-70 region 2 P40_15885 PF04539 Sigma-70 region 3 P40_15900 PF00448 SRP54-type protein, GTPase domain P40_15905 PF00771 FHIPEP family P40_15910 PF01312 FlhB HrpN YscU SpaS Family P40_15915 PF04344 Chemotaxis phosphatase, CheZ P40_15920 PF00072 Response regulator receiver domain P40_15925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain P40_15925 PF02203 Tar ligand binding domain homologue P40_15925 PF00672 HAMP domain P40_15930 PF01339 CheB methylesterase P40_15930 PF00072 Response regulator receiver domain P40_15935 PF03705 CheR methyltransferase, all-alpha domain P40_15935 PF01739 CheR methyltransferase, SAM binding domain P40_15940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain P40_15940 PF08447 PAS fold P40_15945 PF00672 HAMP domain P40_15945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain P40_15945 PF02203 Tar ligand binding domain homologue P40_15950 PF01584 CheW-like domain P40_15960 PF13677 Membrane MotB of proton-channel complex MotA/MotB P40_15960 PF00691 OmpA family P40_15965 PF01618 MotA/TolQ/ExbB proton channel family P40_15970 PF05280 Flagellar transcriptional activator (FlhC) P40_15975 PF05247 Flagellar transcriptional activator (FlhD) P40_15980 PF01312 FlhB HrpN YscU SpaS Family P40_15995 PF02561 Flagellar protein FliS P40_16000 PF02465 Flagellar hook-associated protein 2 N-terminus P40_16000 PF07195 Flagellar hook-associated protein 2 C-terminus P40_16000 PF07196 Flagellin hook IN motif P40_16005 PF00700 Bacterial flagellin C-terminal helical region P40_16005 PF00669 Bacterial flagellin N-terminal helical region P40_16005 PF08884 Flagellin D3 domain P40_16015 PF03466 LysR substrate binding domain P40_16015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_16030 PF08345 Flagellar M-ring protein C-terminal P40_16030 PF01514 Secretory protein of YscJ/FliF family P40_16035 PF01706 FliG C-terminal domain P40_16035 PF14841 FliG middle domain P40_16035 PF14842 FliG N-terminal domain P40_16040 PF02108 Flagellar assembly protein FliH P40_16045 PF18269 T3SS EscN ATPase C-terminal domain P40_16045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain P40_16060 PF03748 Flagellar basal body-associated protein FliL P40_16065 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term P40_16065 PF02154 Flagellar motor switch protein FliM P40_16070 PF16973 Flagellar motor switch protein FliN N-terminal P40_16070 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term P40_16075 PF04347 Flagellar biosynthesis protein, FliO P40_16080 PF00813 FliP family P40_16085 PF01313 Bacterial export proteins, family 3 P40_16090 PF01311 Bacterial export proteins, family 1 P40_16095 PF00669 Bacterial flagellin N-terminal helical region P40_16100 PF00460 Flagella basal body rod protein P40_16100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal P40_16105 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase P40_16105 PF10135 Rod binding protein P40_16110 PF02119 Flagellar P-ring protein P40_16115 PF02107 Flagellar L-ring protein P40_16120 PF00460 Flagella basal body rod protein P40_16120 PF06429 Flagellar basal body rod FlgEFG protein C-terminal P40_16125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal P40_16125 PF00460 Flagella basal body rod protein P40_16130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal P40_16130 PF00460 Flagella basal body rod protein P40_16130 PF07559 Flagellar basal body protein FlaE P40_16135 PF13860 FlgD Ig-like domain P40_16135 PF03963 Flagellar hook capping protein - N-terminal region P40_16135 PF13861 FlgD Tudor-like domain P40_16140 PF06429 Flagellar basal body rod FlgEFG protein C-terminal P40_16140 PF00460 Flagella basal body rod protein P40_16145 PF00460 Flagella basal body rod protein P40_16165 PF08668 HDOD domain P40_16165 PF00563 EAL domain P40_16190 PF08502 LeuA allosteric (dimerisation) domain P40_16190 PF00682 HMGL-like P40_16210 PF16385 Domain of unknown function P40_16210 PF00884 Sulfatase P40_16220 PF07730 Histidine kinase P40_16225 PF00486 Transcriptional regulatory protein, C terminal P40_16225 PF00072 Response regulator receiver domain P40_16245 PF13193 AMP-binding enzyme C-terminal domain P40_16245 PF00501 AMP-binding enzyme P40_16250 PF03466 LysR substrate binding domain P40_16250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_16255 PF00118 TCP-1/cpn60 chaperonin family P40_16260 PF00166 Chaperonin 10 Kd subunit P40_16265 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain P40_16270 PF07690 Major Facilitator Superfamily P40_16275 PF08546 Ketopantoate reductase PanE/ApbA C terminal P40_16275 PF02558 Ketopantoate reductase PanE/ApbA P40_16280 PF01923 Cobalamin adenosyltransferase P40_16285 PF00672 HAMP domain P40_16285 PF00512 His Kinase A (phospho-acceptor) domain P40_16285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_16290 PF00486 Transcriptional regulatory protein, C terminal P40_16290 PF00072 Response regulator receiver domain P40_16300 PF02817 e3 binding domain P40_16300 PF00364 Biotin-requiring enzyme P40_16300 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) P40_16305 PF00456 Transketolase, thiamine diphosphate binding domain P40_16305 PF17831 Pyruvate dehydrogenase E1 component middle domain P40_16315 PF01510 N-acetylmuramoyl-L-alanine amidase P40_16325 PF01235 Sodium:alanine symporter family P40_16330 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain P40_16330 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain P40_16340 PF16868 NMT1-like family P40_16360 PF00114 Pilin (bacterial filament) P40_16360 PF07963 Prokaryotic N-terminal methylation motif P40_16365 PF00437 Type II/IV secretion system protein P40_16365 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain P40_16370 PF00482 Type II secretion system (T2SS), protein F P40_16375 PF06750 Bacterial Peptidase A24 N-terminal domain P40_16375 PF01478 Type IV leader peptidase family P40_16380 PF01121 Dephospho-CoA kinase P40_16385 PF03884 DNA gyrase inhibitor YacG P40_16390 PF00293 NUDIX domain P40_16395 PF01960 ArgJ family P40_16400 PF07516 SecA Wing and Scaffold domain P40_16400 PF07517 SecA DEAD-like domain P40_16400 PF02810 SEC-C motif P40_16400 PF01043 SecA preprotein cross-linking domain P40_16405 PF01476 LysM domain P40_16405 PF01551 Peptidase family M23 P40_16405 PF08525 Opacity-associated protein A N-terminal motif P40_16415 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase P40_16420 PF00091 Tubulin/FtsZ family, GTPase domain P40_16420 PF12327 FtsZ family, C-terminal domain P40_16425 PF02491 SHS2 domain inserted in FTSA P40_16430 PF03799 Cell division protein FtsQ P40_16430 PF08478 POTRA domain, FtsQ-type P40_16435 PF01820 D-ala D-ala ligase N-terminus P40_16435 PF07478 D-ala D-ala ligase C-terminus P40_16440 PF08245 Mur ligase middle domain P40_16440 PF02875 Mur ligase family, glutamate ligase domain P40_16440 PF01225 Mur ligase family, catalytic domain P40_16445 PF03033 Glycosyltransferase family 28 N-terminal domain P40_16445 PF04101 Glycosyltransferase family 28 C-terminal domain P40_16450 PF01098 Cell cycle protein P40_16455 PF02875 Mur ligase family, glutamate ligase domain P40_16455 PF08245 Mur ligase middle domain P40_16460 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 P40_16460 PF00953 Glycosyl transferase family 4 P40_16465 PF01225 Mur ligase family, catalytic domain P40_16465 PF02875 Mur ligase family, glutamate ligase domain P40_16465 PF08245 Mur ligase middle domain P40_16470 PF08245 Mur ligase middle domain P40_16470 PF02875 Mur ligase family, glutamate ligase domain P40_16470 PF01225 Mur ligase family, catalytic domain P40_16475 PF03717 Penicillin-binding Protein dimerisation domain P40_16475 PF00905 Penicillin binding protein transpeptidase domain P40_16485 PF01795 MraW methylase family P40_16490 PF02381 MraZ protein, putative antitoxin-like P40_16500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases P40_16505 PF04348 LppC putative lipoprotein P40_16510 PF02021 Uncharacterised protein family UPF0102 P40_16515 PF13580 SIS domain P40_16520 PF04972 BON domain P40_16525 PF00501 AMP-binding enzyme P40_16525 PF13193 AMP-binding enzyme C-terminal domain P40_16540 PF00884 Sulfatase P40_16540 PF16347 Domain of unknown function (DUF4976) P40_16545 PF04386 Stringent starvation protein B P40_16550 PF02798 Glutathione S-transferase, N-terminal domain P40_16550 PF00043 Glutathione S-transferase, C-terminal domain P40_16555 PF02167 Cytochrome C1 family P40_16560 PF00032 Cytochrome b(C-terminal)/b6/petD P40_16560 PF00033 Cytochrome b/b6/petB P40_16565 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal P40_16565 PF00355 Rieske [2Fe-2S] domain P40_16570 PF00380 Ribosomal protein S9/S16 P40_16575 PF00572 Ribosomal protein L13 P40_16580 PF00248 Aldo/keto reductase family P40_16585 PF00440 Bacterial regulatory proteins, tetR family P40_16590 PF01593 Flavin containing amine oxidoreductase P40_16600 PF07729 FCD domain P40_16600 PF00392 Bacterial regulatory proteins, gntR family P40_16605 PF13458 Periplasmic binding protein P40_16610 PF02653 Branched-chain amino acid transport system / permease component P40_16620 PF00005 ABC transporter P40_16620 PF12399 Branched-chain amino acid ATP-binding cassette transporter P40_16625 PF00005 ABC transporter P40_16630 PF13193 AMP-binding enzyme C-terminal domain P40_16630 PF00501 AMP-binding enzyme P40_16635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_16635 PF02770 Acyl-CoA dehydrogenase, middle domain P40_16635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_16640 PF09618 CRISPR-associated protein (Cas_Csy4) P40_16645 PF09615 CRISPR-associated protein (Cas_Csy3) P40_16650 PF09614 CRISPR-associated protein (Cas_Csy2) P40_16655 PF09611 CRISPR-associated protein (Cas_Csy1) P40_16660 PF18019 HD domain P40_16665 PF01867 CRISPR associated protein Cas1 P40_16695 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) P40_16700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_16700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_16700 PF02770 Acyl-CoA dehydrogenase, middle domain P40_16705 PF03969 AFG1-like ATPase P40_16710 PF02129 X-Pro dipeptidyl-peptidase (S15 family) P40_16720 PF14306 PUA-like domain P40_16720 PF01747 ATP-sulfurylase P40_16725 PF00781 Diacylglycerol kinase catalytic domain P40_16730 PF01784 NIF3 (NGG1p interacting factor 3) P40_16735 PF13180 PDZ domain P40_16745 PF00155 Aminotransferase class I and II P40_16750 PF00815 Histidinol dehydrogenase P40_16755 PF01634 ATP phosphoribosyltransferase P40_16760 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) P40_16765 PF01722 BolA-like protein P40_16770 PF05494 MlaC protein P40_16775 PF01699 Sodium/calcium exchanger protein P40_16780 PF00571 CBS domain P40_16780 PF01380 SIS domain P40_16800 PF12399 Branched-chain amino acid ATP-binding cassette transporter P40_16800 PF00005 ABC transporter P40_16805 PF04552 Sigma-54, DNA binding domain P40_16805 PF04963 Sigma-54 factor, core binding domain P40_16805 PF00309 Sigma-54 factor, Activator interacting domain (AID) P40_16810 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein P40_16815 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 P40_16820 PF03668 P-loop ATPase protein family P40_16825 PF00381 PTS HPr component phosphorylation site P40_16835 PF00012 Hsp70 protein P40_16845 PF01523 Putative modulator of DNA gyrase P40_16850 PF04751 Protein of unknown function (DUF615) P40_16855 PF07690 Major Facilitator Superfamily P40_16860 PF13302 Acetyltransferase (GNAT) domain P40_16860 PF00027 Cyclic nucleotide-binding domain P40_16865 PF01523 Putative modulator of DNA gyrase P40_16870 PF00795 Carbon-nitrogen hydrolase P40_16880 PF02545 Maf-like protein P40_16885 PF04093 rod shape-determining protein MreD P40_16890 PF04085 rod shape-determining protein MreC P40_16900 PF02686 Glu-tRNAGln amidotransferase C subunit P40_16905 PF01425 Amidase P40_16910 PF02934 GatB/GatE catalytic domain P40_16910 PF02637 GatB domain P40_16925 PF00378 Enoyl-CoA hydratase/isomerase P40_16955 PF01494 FAD binding domain P40_17005 PF01292 Prokaryotic cytochrome b561 P40_17020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_17020 PF00512 His Kinase A (phospho-acceptor) domain P40_17020 PF00989 PAS fold P40_17020 PF13188 PAS domain P40_17020 PF13426 PAS domain P40_17025 PF00196 Bacterial regulatory proteins, luxR family P40_17025 PF00072 Response regulator receiver domain P40_17040 PF00899 ThiF family P40_17045 PF17827 PrmC N-terminal domain P40_17045 PF13847 Methyltransferase domain P40_17050 PF03462 PCRF domain P40_17050 PF00472 RF-1 domain P40_17055 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain P40_17055 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain P40_17055 PF01488 Shikimate / quinate 5-dehydrogenase P40_17065 PF03550 Outer membrane lipoprotein LolB P40_17070 PF08544 GHMP kinases C terminal P40_17070 PF00288 GHMP kinases N terminal domain P40_17080 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase P40_17080 PF14572 Phosphoribosyl synthetase-associated domain P40_17085 PF01386 Ribosomal L25p family P40_17085 PF14693 Ribosomal protein TL5, C-terminal domain P40_17090 PF01195 Peptidyl-tRNA hydrolase P40_17100 PF01926 50S ribosome-binding GTPase P40_17100 PF06071 Protein of unknown function (DUF933) P40_17110 PF02625 XdhC and CoxI family P40_17110 PF13478 XdhC Rossmann domain P40_17115 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase P40_17120 PF00111 2Fe-2S iron-sulfur cluster binding domain P40_17120 PF01799 [2Fe-2S] binding domain P40_17155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_17155 PF03466 LysR substrate binding domain P40_17185 PF01758 Sodium Bile acid symporter family P40_17190 PF06426 Serine acetyltransferase, N-terminal P40_17190 PF00132 Bacterial transferase hexapeptide (six repeats) P40_17195 PF00588 SpoU rRNA Methylase family P40_17200 PF00459 Inositol monophosphatase family P40_17205 PF00171 Aldehyde dehydrogenase family P40_17210 PF00180 Isocitrate/isopropylmalate dehydrogenase P40_17220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain P40_17225 PF01425 Amidase P40_17230 PF00155 Aminotransferase class I and II P40_17235 PF02355 Protein export membrane protein P40_17235 PF07549 SecD/SecF GG Motif P40_17240 PF07549 SecD/SecF GG Motif P40_17240 PF13721 SecD export protein N-terminal TM region P40_17240 PF02355 Protein export membrane protein P40_17245 PF02699 Preprotein translocase subunit P40_17250 PF01702 Queuine tRNA-ribosyltransferase P40_17255 PF02547 Queuosine biosynthesis protein P40_17280 PF13614 AAA domain P40_17550 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system P40_17555 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system P40_17570 PF02599 Global regulator protein family P40_17590 PF16671 Actin cross-linking domain P40_17590 PF04717 Type VI secretion system, phage-baseplate injector P40_17605 PF04002 RadC-like JAB domain P40_17645 PF04002 RadC-like JAB domain P40_17690 PF00589 Phage integrase family P40_17690 PF02899 Phage integrase, N-terminal SAM-like domain P40_17700 PF03739 Lipopolysaccharide export system permease LptF/LptG P40_17705 PF03739 Lipopolysaccharide export system permease LptF/LptG P40_17710 PF00883 Cytosol aminopeptidase family, catalytic domain P40_17710 PF02789 Cytosol aminopeptidase family, N-terminal domain P40_17715 PF04364 DNA polymerase III chi subunit, HolC P40_17720 PF10458 Valyl tRNA synthetase tRNA binding arm P40_17720 PF00133 tRNA synthetases class I (I, L, M and V) P40_17720 PF08264 Anticodon-binding domain of tRNA P40_17735 PF00781 Diacylglycerol kinase catalytic domain P40_17765 PF01066 CDP-alcohol phosphatidyltransferase P40_17770 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain P40_17770 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain P40_17775 PF03466 LysR substrate binding domain P40_17775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_17785 PF13193 AMP-binding enzyme C-terminal domain P40_17785 PF00501 AMP-binding enzyme P40_17795 PF01810 LysE type translocator P40_17800 PF10369 Small subunit of acetolactate synthase P40_17805 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain P40_17805 PF00205 Thiamine pyrophosphate enzyme, central domain P40_17805 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain P40_17820 PF00004 ATPase family associated with various cellular activities (AAA) P40_17820 PF07724 AAA domain (Cdc48 subfamily) P40_17820 PF10431 C-terminal, D2-small domain, of ClpB protein P40_17820 PF17871 AAA lid domain P40_17820 PF02861 Clp amino terminal domain, pathogenicity island component P40_17830 PF01479 S4 domain P40_17830 PF00849 RNA pseudouridylate synthase P40_17835 PF13525 Outer membrane lipoprotein P40_17840 PF02540 NAD synthase P40_17840 PF00795 Carbon-nitrogen hydrolase P40_17850 PF00512 His Kinase A (phospho-acceptor) domain P40_17850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_17855 PF00158 Sigma-54 interaction domain P40_17855 PF02954 Bacterial regulatory protein, Fis family P40_17855 PF00072 Response regulator receiver domain P40_17860 PF01266 FAD dependent oxidoreductase P40_17900 PF02401 LytB protein P40_17905 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase P40_17910 PF01252 Signal peptidase (SPase) II P40_17915 PF08264 Anticodon-binding domain of tRNA P40_17915 PF06827 Zinc finger found in FPG and IleRS P40_17915 PF00133 tRNA synthetases class I (I, L, M and V) P40_17920 PF01687 Riboflavin kinase P40_17920 PF06574 FAD synthetase P40_17925 PF03023 Lipid II flippase MurJ P40_17930 PF01649 Ribosomal protein S20 P40_17935 PF00696 Amino acid kinase family P40_17935 PF01472 PUA domain P40_17940 PF01926 50S ribosome-binding GTPase P40_17940 PF01018 GTP1/OBG P40_17945 PF01016 Ribosomal L27 protein P40_17950 PF00829 Ribosomal prokaryotic L21 protein P40_17955 PF00348 Polyprenyl synthetase P40_17985 PF12833 Helix-turn-helix domain P40_17985 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term P40_18010 PF03109 ABC1 family P40_18025 PF00004 ATPase family associated with various cellular activities (AAA) P40_18025 PF02190 ATP-dependent protease La (LON) substrate-binding domain P40_18025 PF05362 Lon protease (S16) C-terminal proteolytic domain P40_18035 PF00440 Bacterial regulatory proteins, tetR family P40_18040 PF00106 short chain dehydrogenase P40_18045 PF00561 alpha/beta hydrolase fold P40_18050 PF00072 Response regulator receiver domain P40_18050 PF00211 Adenylate and Guanylate cyclase catalytic domain P40_18060 PF00263 Bacterial type II and III secretion system protein P40_18060 PF03958 Bacterial type II/III secretion system short domain P40_18075 PF00436 Single-strand binding protein family P40_18080 PF07690 Major Facilitator Superfamily P40_18085 PF00196 Bacterial regulatory proteins, luxR family P40_18090 PF17755 UvrA DNA-binding domain P40_18090 PF17760 UvrA interaction domain P40_18115 PF01740 STAS domain P40_18115 PF00916 Sulfate permease family P40_18125 PF01196 Ribosomal protein L17 P40_18130 PF01000 RNA polymerase Rpb3/RpoA insert domain P40_18130 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain P40_18130 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain P40_18135 PF01479 S4 domain P40_18135 PF00163 Ribosomal protein S4/S9 N-terminal domain P40_18140 PF00411 Ribosomal protein S11 P40_18145 PF00416 Ribosomal protein S13/S18 P40_18150 PF00444 Ribosomal protein L36 P40_18155 PF00344 SecY translocase P40_18160 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A P40_18165 PF00327 Ribosomal protein L30p/L7e P40_18170 PF03719 Ribosomal protein S5, C-terminal domain P40_18170 PF00333 Ribosomal protein S5, N-terminal domain P40_18175 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast P40_18180 PF00347 Ribosomal protein L6 P40_18185 PF00410 Ribosomal protein S8 P40_18190 PF00253 Ribosomal protein S14p/S29e P40_18195 PF00673 ribosomal L5P family C-terminus P40_18195 PF00281 Ribosomal protein L5 P40_18200 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 P40_18205 PF00238 Ribosomal protein L14p/L23e P40_18210 PF00366 Ribosomal protein S17 P40_18215 PF00831 Ribosomal L29 protein P40_18220 PF00252 Ribosomal protein L16p/L10e P40_18225 PF07650 KH domain P40_18225 PF00189 Ribosomal protein S3, C-terminal domain P40_18230 PF00237 Ribosomal protein L22p/L17e P40_18235 PF00203 Ribosomal protein S19 P40_18240 PF03947 Ribosomal Proteins L2, C-terminal domain P40_18240 PF00181 Ribosomal Proteins L2, RNA binding domain P40_18245 PF00276 Ribosomal protein L23 P40_18250 PF00573 Ribosomal protein L4/L1 family P40_18255 PF00297 Ribosomal protein L3 P40_18260 PF00338 Ribosomal protein S10p/S20e P40_18265 PF00009 Elongation factor Tu GTP binding domain P40_18265 PF03143 Elongation factor Tu C-terminal domain P40_18265 PF03144 Elongation factor Tu domain 2 P40_18270 PF03764 Elongation factor G, domain IV P40_18270 PF00679 Elongation factor G C-terminus P40_18270 PF14492 Elongation Factor G, domain II P40_18270 PF00009 Elongation factor Tu GTP binding domain P40_18270 PF03144 Elongation factor Tu domain 2 P40_18275 PF00177 Ribosomal protein S7p/S5e P40_18280 PF00164 Ribosomal protein S12/S23 P40_18285 PF00623 RNA polymerase Rpb1, domain 2 P40_18285 PF04998 RNA polymerase Rpb1, domain 5 P40_18285 PF04997 RNA polymerase Rpb1, domain 1 P40_18285 PF05000 RNA polymerase Rpb1, domain 4 P40_18285 PF04983 RNA polymerase Rpb1, domain 3 P40_18290 PF04563 RNA polymerase beta subunit P40_18290 PF04561 RNA polymerase Rpb2, domain 2 P40_18290 PF00562 RNA polymerase Rpb2, domain 6 P40_18290 PF04565 RNA polymerase Rpb2, domain 3 P40_18290 PF10385 RNA polymerase beta subunit external 1 domain P40_18290 PF04560 RNA polymerase Rpb2, domain 7 P40_18295 PF00542 Ribosomal protein L7/L12 C-terminal domain P40_18295 PF16320 Ribosomal protein L7/L12 dimerisation domain P40_18300 PF00466 Ribosomal protein L10 P40_18305 PF00687 Ribosomal protein L1p/L10e family P40_18310 PF00298 Ribosomal protein L11, RNA binding domain P40_18310 PF03946 Ribosomal protein L11, N-terminal domain P40_18315 PF02357 Transcription termination factor nusG P40_18315 PF00467 KOW motif P40_18320 PF00584 SecE/Sec61-gamma subunits of protein translocation complex P40_18330 PF00009 Elongation factor Tu GTP binding domain P40_18330 PF03143 Elongation factor Tu C-terminal domain P40_18330 PF03144 Elongation factor Tu domain 2 P40_18360 PF03309 Type III pantothenate kinase P40_18365 PF02237 Biotin protein ligase C terminal domain P40_18365 PF03099 Biotin/lipoate A/B protein ligase family P40_18365 PF08279 HTH domain P40_18370 PF00501 AMP-binding enzyme P40_18400 PF00579 tRNA synthetases class I (W and Y) P40_18405 PF01551 Peptidase family M23 P40_18405 PF04225 Opacity-associated protein A LysM-like domain P40_18410 PF03702 Anhydro-N-acetylmuramic acid kinase P40_18415 PF01569 PAP2 superfamily P40_18420 PF01521 Iron-sulphur cluster biosynthesis P40_18435 PF00654 Voltage gated chloride channel P40_18445 PF08543 Phosphomethylpyrimidine kinase P40_18445 PF03070 TENA/THI-4/PQQC family P40_18445 PF02581 Thiamine monophosphate synthase P40_18450 PF02581 Thiamine monophosphate synthase P40_18455 PF00202 Aminotransferase class-III P40_18460 PF04073 Aminoacyl-tRNA editing domain P40_18470 PF14814 Bifunctional transglycosylase second domain P40_18470 PF00912 Transglycosylase P40_18470 PF00905 Penicillin binding protein transpeptidase domain P40_18475 PF00294 pfkB family carbohydrate kinase P40_18485 PF01636 Phosphotransferase enzyme family P40_18490 PF17746 SfsA N-terminal OB domain P40_18490 PF03749 Sugar fermentation stimulation protein RE domain P40_18495 PF00155 Aminotransferase class I and II P40_18505 PF01258 Prokaryotic dksA/traR C4-type zinc finger P40_18510 PF00749 tRNA synthetases class I (E and Q), catalytic domain P40_18520 PF08448 PAS fold P40_18520 PF00512 His Kinase A (phospho-acceptor) domain P40_18520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_18520 PF00072 Response regulator receiver domain P40_18520 PF13188 PAS domain P40_18525 PF00158 Sigma-54 interaction domain P40_18525 PF00072 Response regulator receiver domain P40_18525 PF02954 Bacterial regulatory protein, Fis family P40_18530 PF01743 Poly A polymerase head domain P40_18530 PF12627 Probable RNA and SrmB- binding site of polymerase A P40_18530 PF12626 Polymerase A arginine-rich C-terminus P40_18535 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) P40_18540 PF01712 Deoxynucleoside kinase P40_18545 PF02548 Ketopantoate hydroxymethyltransferase P40_18550 PF02569 Pantoate-beta-alanine ligase P40_18555 PF02261 Aspartate decarboxylase P40_18560 PF00501 AMP-binding enzyme P40_18560 PF13193 AMP-binding enzyme C-terminal domain P40_18560 PF16177 Acetyl-coenzyme A synthetase N-terminus P40_18570 PF07690 Major Facilitator Superfamily P40_18575 PF13533 Biotin-lipoyl like P40_18580 PF01047 MarR family P40_18590 PF00378 Enoyl-CoA hydratase/isomerase P40_18600 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_18600 PF00724 NADH:flavin oxidoreductase / NADH oxidase family P40_18615 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component P40_18625 PF00392 Bacterial regulatory proteins, gntR family P40_18625 PF07729 FCD domain P40_18630 PF13193 AMP-binding enzyme C-terminal domain P40_18630 PF00501 AMP-binding enzyme P40_18640 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) P40_18645 PF03725 3' exoribonuclease family, domain 2 P40_18645 PF00575 S1 RNA binding domain P40_18645 PF00013 KH domain P40_18645 PF01138 3' exoribonuclease family, domain 1 P40_18645 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain P40_18650 PF00312 Ribosomal protein S15 P40_18655 PF16198 tRNA pseudouridylate synthase B C-terminal domain P40_18655 PF09157 Pseudouridine synthase II TruB, C-terminal P40_18655 PF01509 TruB family pseudouridylate synthase (N terminal domain) P40_18660 PF02033 Ribosome-binding factor A P40_18665 PF00009 Elongation factor Tu GTP binding domain P40_18665 PF11987 Translation-initiation factor 2 P40_18665 PF08364 Bacterial translation initiation factor IF-2 associated region P40_18665 PF04760 Translation initiation factor IF-2, N-terminal region P40_18670 PF13184 NusA-like KH domain P40_18670 PF08529 NusA N-terminal domain P40_18675 PF02576 RimP N-terminal domain P40_18675 PF17384 RimP C-terminal SH3 domain P40_18690 PF03840 Preprotein translocase SecG subunit P40_18695 PF00121 Triosephosphate isomerase P40_18700 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III P40_18700 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain P40_18700 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II P40_18700 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I P40_18705 PF00809 Pterin binding enzyme P40_18710 PF06480 FtsH Extracellular P40_18710 PF17862 AAA+ lid domain P40_18710 PF00004 ATPase family associated with various cellular activities (AAA) P40_18710 PF01434 Peptidase family M41 P40_18715 PF01728 FtsJ-like methyltransferase P40_18720 PF01985 CRS1 / YhbY (CRM) domain P40_18725 PF03449 Transcription elongation factor, N-terminal P40_18725 PF01272 Transcription elongation factor, GreA/GreB, C-term P40_18730 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain P40_18730 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain P40_18730 PF02142 MGS-like domain P40_18735 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain P40_18735 PF00117 Glutamine amidotransferase class-I P40_18740 PF01113 Dihydrodipicolinate reductase, N-terminus P40_18740 PF05173 Dihydrodipicolinate reductase, C-terminus P40_18745 PF00226 DnaJ domain P40_18745 PF01556 DnaJ C terminal domain P40_18745 PF00684 DnaJ central domain P40_18750 PF00012 Hsp70 protein P40_18755 PF01025 GrpE P40_18760 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding P40_18760 PF01628 HrcA protein C terminal domain P40_18765 PF02463 RecF/RecN/SMC N terminal domain P40_18770 PF01475 Ferric uptake regulator family P40_18775 PF04355 SmpA / OmlA family P40_18780 PF03658 RnfH family Ubiquitin P40_18785 PF00209 Sodium:neurotransmitter symporter family P40_18790 PF01668 SmpB protein P40_18845 PF03069 Acetamidase/Formamidase family P40_18850 PF00528 Binding-protein-dependent transport system inner membrane component P40_18855 PF00528 Binding-protein-dependent transport system inner membrane component P40_18860 PF01547 Bacterial extracellular solute-binding protein P40_18870 PF17912 MalK OB fold domain P40_18870 PF00005 ABC transporter P40_18875 PF05199 GMC oxidoreductase P40_18875 PF00732 GMC oxidoreductase P40_18880 PF00171 Aldehyde dehydrogenase family P40_18895 PF00248 Aldo/keto reductase family P40_18900 PF00106 short chain dehydrogenase P40_18905 PF03466 LysR substrate binding domain P40_18905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_18930 PF01425 Amidase P40_18940 PF07729 FCD domain P40_18940 PF00392 Bacterial regulatory proteins, gntR family P40_18950 PF02633 Creatinine amidohydrolase P40_18960 PF00528 Binding-protein-dependent transport system inner membrane component P40_18965 PF00005 ABC transporter P40_18980 PF00857 Isochorismatase family P40_18990 PF00355 Rieske [2Fe-2S] domain P40_18995 PF07690 Major Facilitator Superfamily P40_19000 PF01979 Amidohydrolase family P40_19005 PF00355 Rieske [2Fe-2S] domain P40_19010 PF09084 NMT1/THI5 like P40_19015 PF09084 NMT1/THI5 like P40_19020 PF03358 NADPH-dependent FMN reductase P40_19025 PF01979 Amidohydrolase family P40_19030 PF01014 Uricase P40_19030 PF09349 OHCU decarboxylase P40_19035 PF01522 Polysaccharide deacetylase P40_19040 PF00576 HIUase/Transthyretin family P40_19050 PF03561 Allantoicase repeat P40_19055 PF04115 Ureidoglycolate lyase P40_19065 PF01979 Amidohydrolase family P40_19070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_19070 PF03466 LysR substrate binding domain P40_19090 PF00005 ABC transporter P40_19095 PF00528 Binding-protein-dependent transport system inner membrane component P40_19100 PF01171 PP-loop family P40_19100 PF11734 TilS substrate C-terminal domain P40_19100 PF14437 MafB19-like deaminase P40_19110 PF01740 STAS domain P40_19110 PF00916 Sulfate permease family P40_19120 PF00912 Transglycosylase P40_19130 PF00117 Glutamine amidotransferase class-I P40_19130 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain P40_19140 PF00682 HMGL-like P40_19140 PF08502 LeuA allosteric (dimerisation) domain P40_19145 PF01037 Lrp/AsnC ligand binding domain P40_19150 PF02423 Ornithine cyclodeaminase/mu-crystallin family P40_19160 PF14850 DNA-binding domain of Proline dehydrogenase P40_19160 PF18327 Proline utilization A proline dehydrogenase N-terminal domain P40_19160 PF00171 Aldehyde dehydrogenase family P40_19160 PF01619 Proline dehydrogenase P40_19175 PF02770 Acyl-CoA dehydrogenase, middle domain P40_19175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_19175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_19190 PF00501 AMP-binding enzyme P40_19190 PF13193 AMP-binding enzyme C-terminal domain P40_19195 PF00005 ABC transporter P40_19200 PF00005 ABC transporter P40_19200 PF12399 Branched-chain amino acid ATP-binding cassette transporter P40_19210 PF02653 Branched-chain amino acid transport system / permease component P40_19225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_19225 PF03466 LysR substrate binding domain P40_19245 PF08241 Methyltransferase domain P40_19250 PF00561 alpha/beta hydrolase fold P40_19255 PF00155 Aminotransferase class I and II P40_19260 PF06968 Biotin and Thiamin Synthesis associated domain P40_19260 PF04055 Radical SAM superfamily P40_19265 PF00156 Phosphoribosyl transferase domain P40_19270 PF04029 2-phosphosulpholactate phosphatase P40_19275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_19275 PF02770 Acyl-CoA dehydrogenase, middle domain P40_19275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_19290 PF01208 Uroporphyrinogen decarboxylase (URO-D) P40_19295 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_19295 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster P40_19300 PF04898 Glutamate synthase central domain P40_19300 PF01645 Conserved region in glutamate synthase P40_19300 PF01493 GXGXG motif P40_19300 PF00310 Glutamine amidotransferases class-II P40_19310 PF01761 3-dehydroquinate synthase P40_19315 PF01202 Shikimate kinase P40_19320 PF07660 Secretin and TonB N terminus short domain P40_19320 PF03958 Bacterial type II/III secretion system short domain P40_19320 PF00263 Bacterial type II and III secretion system protein P40_19320 PF11741 AMIN domain P40_19345 PF00912 Transglycosylase P40_19345 PF00905 Penicillin binding protein transpeptidase domain P40_19345 PF17092 Penicillin-binding protein OB-like domain P40_19360 PF03949 Malic enzyme, NAD binding domain P40_19360 PF00390 Malic enzyme, N-terminal domain P40_19365 PF01197 Ribosomal protein L31 P40_19370 PF00270 DEAD/DEAH box helicase P40_19370 PF00271 Helicase conserved C-terminal domain P40_19370 PF18319 PriA DNA helicase Cys-rich region (CRR) domain P40_19370 PF18074 Primosomal protein N C-terminal domain P40_19370 PF17764 3′ DNA-binding domain (3′BD) P40_19375 PF07690 Major Facilitator Superfamily P40_19380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion P40_19380 PF00529 HlyD membrane-fusion protein of T1SS P40_19385 PF05746 DALR anticodon binding domain P40_19385 PF00750 tRNA synthetases class I (R) P40_19385 PF03485 Arginyl tRNA synthetase N terminal domain P40_19395 PF00227 Proteasome subunit P40_19400 PF00004 ATPase family associated with various cellular activities (AAA) P40_19400 PF07724 AAA domain (Cdc48 subfamily) P40_19400 PF10431 C-terminal, D2-small domain, of ClpB protein P40_19405 PF00920 Dehydratase family P40_19420 PF00111 2Fe-2S iron-sulfur cluster binding domain P40_19420 PF00175 Oxidoreductase NAD-binding domain P40_19420 PF00970 Oxidoreductase FAD-binding domain P40_19425 PF04403 Paraquat-inducible protein A P40_19430 PF02470 MlaD protein P40_19455 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain P40_19455 PF03900 Porphobilinogen deaminase, C-terminal domain P40_19460 PF04397 LytTr DNA-binding domain P40_19460 PF00072 Response regulator receiver domain P40_19465 PF06580 Histidine kinase P40_19465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_19465 PF07694 5TMR of 5TMR-LYT P40_19470 PF00206 Lyase P40_19470 PF14698 Argininosuccinate lyase C-terminal P40_19480 PF01554 MatE P40_19490 PF01850 PIN domain P40_19500 PF07715 TonB-dependent Receptor Plug Domain P40_19500 PF00593 TonB dependent receptor P40_19510 PF08281 Sigma-70, region 4 P40_19510 PF04542 Sigma-70 region 2 P40_19520 PF00440 Bacterial regulatory proteins, tetR family P40_19530 PF04073 Aminoacyl-tRNA editing domain P40_19535 PF01272 Transcription elongation factor, GreA/GreB, C-term P40_19535 PF14760 Rnk N-terminus P40_19540 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain P40_19540 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain P40_19545 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ P40_19550 PF00561 alpha/beta hydrolase fold P40_19550 PF08386 TAP-like protein P40_19555 PF00743 Flavin-binding monooxygenase-like P40_19565 PF01678 Diaminopimelate epimerase P40_19575 PF02899 Phage integrase, N-terminal SAM-like domain P40_19575 PF00589 Phage integrase family P40_19585 PF04287 tRNA pseudouridine synthase C P40_19600 PF01272 Transcription elongation factor, GreA/GreB, C-term P40_19600 PF03449 Transcription elongation factor, N-terminal P40_19605 PF00490 Delta-aminolevulinic acid dehydratase P40_19610 PF07715 TonB-dependent Receptor Plug Domain P40_19610 PF00593 TonB dependent receptor P40_19615 PF17941 Polyphosphate kinase C-terminal domain 1 P40_19615 PF13089 Polyphosphate kinase N-terminal domain P40_19615 PF13090 Polyphosphate kinase C-terminal domain 2 P40_19615 PF02503 Polyphosphate kinase middle domain P40_19620 PF06445 GyrI-like small molecule binding domain P40_19625 PF02541 Ppx/GppA phosphatase family P40_19630 PF00085 Thioredoxin P40_19635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain P40_19635 PF07498 Rho termination factor, N-terminal domain P40_19635 PF07497 Rho termination factor, RNA-binding domain P40_19640 PF00857 Isochorismatase family P40_19645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_19645 PF03466 LysR substrate binding domain P40_19655 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase P40_19660 PF00106 short chain dehydrogenase P40_19665 PF04030 D-arabinono-1,4-lactone oxidase P40_19665 PF01565 FAD binding domain P40_19680 PF00672 HAMP domain P40_19680 PF00512 His Kinase A (phospho-acceptor) domain P40_19680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_19685 PF00072 Response regulator receiver domain P40_19685 PF00486 Transcriptional regulatory protein, C terminal P40_19690 PF03435 Saccharopine dehydrogenase NADP binding domain P40_19695 PF04909 Amidohydrolase P40_19700 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component P40_19710 PF03480 Bacterial extracellular solute-binding protein, family 7 P40_19715 PF07729 FCD domain P40_19715 PF00392 Bacterial regulatory proteins, gntR family P40_19720 PF01425 Amidase P40_19725 PF00107 Zinc-binding dehydrogenase P40_19725 PF08240 Alcohol dehydrogenase GroES-like domain P40_19730 PF13193 AMP-binding enzyme C-terminal domain P40_19730 PF00501 AMP-binding enzyme P40_19745 PF02333 Phytase P40_19760 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term P40_19760 PF12833 Helix-turn-helix domain P40_19775 PF08281 Sigma-70, region 4 P40_19775 PF04542 Sigma-70 region 2 P40_19785 PF07715 TonB-dependent Receptor Plug Domain P40_19785 PF00593 TonB dependent receptor P40_19805 PF12843 Putative quorum-sensing-regulated virulence factor P40_19815 PF01545 Cation efflux family P40_19815 PF16916 Dimerisation domain of Zinc Transporter P40_19820 PF13411 MerR HTH family regulatory protein P40_19825 PF03600 Citrate transporter P40_19830 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase P40_19840 PF02696 Uncharacterized ACR, YdiU/UPF0061 family P40_19855 PF00873 AcrB/AcrD/AcrF family P40_19860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion P40_19860 PF00529 HlyD membrane-fusion protein of T1SS P40_19880 PF00579 tRNA synthetases class I (W and Y) P40_19885 PF02805 Metal binding domain of Ada P40_19885 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain P40_19885 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain P40_19885 PF12833 Helix-turn-helix domain P40_19925 PF02371 Transposase IS116/IS110/IS902 family P40_19925 PF01548 Transposase P40_19930 PF13192 Thioredoxin domain P40_19930 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_19935 PF10417 C-terminal domain of 1-Cys peroxiredoxin P40_19935 PF00578 AhpC/TSA family P40_19940 PF12857 TOBE-like domain P40_19940 PF00005 ABC transporter P40_19945 PF00528 Binding-protein-dependent transport system inner membrane component P40_19950 PF00528 Binding-protein-dependent transport system inner membrane component P40_19960 PF00267 Gram-negative porin P40_19975 PF17200 Single Cache domain 2 P40_19975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain P40_19975 PF00672 HAMP domain P40_19985 PF00394 Multicopper oxidase P40_19985 PF07731 Multicopper oxidase P40_19985 PF07732 Multicopper oxidase P40_19990 PF05275 Copper resistance protein B precursor (CopB) P40_20000 PF00484 Carbonic anhydrase P40_20005 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase P40_20010 PF00501 AMP-binding enzyme P40_20010 PF13193 AMP-binding enzyme C-terminal domain P40_20015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_20015 PF03466 LysR substrate binding domain P40_20040 PF13193 AMP-binding enzyme C-terminal domain P40_20040 PF00501 AMP-binding enzyme P40_20050 PF00171 Aldehyde dehydrogenase family P40_20055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_20055 PF02770 Acyl-CoA dehydrogenase, middle domain P40_20055 PF12806 Acetyl-CoA dehydrogenase C-terminal like P40_20055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_20060 PF00106 short chain dehydrogenase P40_20070 PF01575 MaoC like domain P40_20080 PF00989 PAS fold P40_20080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_20080 PF00512 His Kinase A (phospho-acceptor) domain P40_20085 PF00072 Response regulator receiver domain P40_20085 PF00196 Bacterial regulatory proteins, luxR family P40_20095 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_20095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain P40_20100 PF02082 Transcriptional regulator P40_20110 PF07685 CobB/CobQ-like glutamine amidotransferase domain P40_20110 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain P40_20115 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP P40_20115 PF12557 Cob(I)alamin adenosyltransferase N terminal P40_20120 PF07685 CobB/CobQ-like glutamine amidotransferase domain P40_20120 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain P40_20125 PF00005 ABC transporter P40_20130 PF01032 FecCD transport family P40_20135 PF01497 Periplasmic binding protein P40_20140 PF07715 TonB-dependent Receptor Plug Domain P40_20140 PF00593 TonB dependent receptor P40_20145 PF00155 Aminotransferase class I and II P40_20150 PF17113 Regulatory signalling modulator protein AmpE P40_20150 PF03186 CobD/Cbib protein P40_20155 PF02277 Phosphoribosyltransferase P40_20165 PF02654 Cobalamin-5-phosphate synthase P40_20180 PF08521 Two-component sensor kinase N-terminal P40_20180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_20180 PF00512 His Kinase A (phospho-acceptor) domain P40_20185 PF00072 Response regulator receiver domain P40_20185 PF00486 Transcriptional regulatory protein, C terminal P40_20190 PF09423 PhoD-like phosphatase P40_20190 PF16655 PhoD-like phosphatase, N-terminal domain P40_20200 PF13442 Cytochrome C oxidase, cbb3-type, subunit III P40_20205 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase P40_20220 PF02515 CoA-transferase family III P40_20230 PF00753 Metallo-beta-lactamase superfamily P40_20240 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) P40_20250 PF00106 short chain dehydrogenase P40_20255 PF03466 LysR substrate binding domain P40_20255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_20260 PF01894 Uncharacterised protein family UPF0047 P40_20265 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain P40_20265 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain P40_20275 PF00171 Aldehyde dehydrogenase family P40_20280 PF00732 GMC oxidoreductase P40_20280 PF05199 GMC oxidoreductase P40_20285 PF02028 BCCT, betaine/carnitine/choline family transporter P40_20295 PF17810 Arginine decarboxylase helical bundle domain P40_20295 PF17944 Arginine decarboxylase C-terminal helical extension P40_20295 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain P40_20300 PF17284 Spermidine synthase tetramerisation domain P40_20305 PF07690 Major Facilitator Superfamily P40_20310 PF01323 DSBA-like thioredoxin domain P40_20315 PF00106 short chain dehydrogenase P40_20320 PF01638 HxlR-like helix-turn-helix P40_20325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_20325 PF03466 LysR substrate binding domain P40_20335 PF00106 short chain dehydrogenase P40_20340 PF00909 Ammonium Transporter Family P40_20345 PF00543 Nitrogen regulatory protein P-II P40_20350 PF04380 Membrane fusogenic activity P40_20355 PF14864 Alkyl sulfatase C-terminal P40_20355 PF14863 Alkyl sulfatase dimerisation P40_20355 PF00753 Metallo-beta-lactamase superfamily P40_20360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_20360 PF03466 LysR substrate binding domain P40_20365 PF13335 Magnesium chelatase, subunit ChlI C-terminal P40_20365 PF01078 Magnesium chelatase, subunit ChlI P40_20370 PF00892 EamA-like transporter family P40_20385 PF12833 Helix-turn-helix domain P40_20385 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term P40_20390 PF01479 S4 domain P40_20390 PF00849 RNA pseudouridylate synthase P40_20395 PF00580 UvrD/REP helicase N-terminal domain P40_20395 PF13361 UvrD-like helicase C-terminal domain P40_20400 PF13442 Cytochrome C oxidase, cbb3-type, subunit III P40_20405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_20405 PF00672 HAMP domain P40_20405 PF00512 His Kinase A (phospho-acceptor) domain P40_20405 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB P40_20405 PF08448 PAS fold P40_20415 PF00486 Transcriptional regulatory protein, C terminal P40_20415 PF00072 Response regulator receiver domain P40_20425 PF05721 Phytanoyl-CoA dioxygenase (PhyH) P40_20435 PF02770 Acyl-CoA dehydrogenase, middle domain P40_20435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_20435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_20440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_20440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_20440 PF02770 Acyl-CoA dehydrogenase, middle domain P40_20455 PF00501 AMP-binding enzyme P40_20455 PF13193 AMP-binding enzyme C-terminal domain P40_20460 PF13193 AMP-binding enzyme C-terminal domain P40_20460 PF00501 AMP-binding enzyme P40_20465 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component P40_20475 PF00501 AMP-binding enzyme P40_20475 PF13193 AMP-binding enzyme C-terminal domain P40_20480 PF00108 Thiolase, N-terminal domain P40_20480 PF02803 Thiolase, C-terminal domain P40_20485 PF00106 short chain dehydrogenase P40_20490 PF00196 Bacterial regulatory proteins, luxR family P40_20490 PF17874 MalT-like TPR region P40_20495 PF13660 Domain of unknown function (DUF4147) P40_20495 PF05161 MOFRL family P40_20500 PF00378 Enoyl-CoA hydratase/isomerase P40_20510 PF00378 Enoyl-CoA hydratase/isomerase P40_20515 PF02515 CoA-transferase family III P40_20525 PF00378 Enoyl-CoA hydratase/isomerase P40_20530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_20530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_20530 PF02770 Acyl-CoA dehydrogenase, middle domain P40_20545 PF00378 Enoyl-CoA hydratase/isomerase P40_20555 PF00378 Enoyl-CoA hydratase/isomerase P40_20565 PF01037 Lrp/AsnC ligand binding domain P40_20570 PF01810 LysE type translocator P40_20580 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component P40_20590 PF00501 AMP-binding enzyme P40_20590 PF13193 AMP-binding enzyme C-terminal domain P40_20615 PF04493 Endonuclease V P40_20655 PF13533 Biotin-lipoyl like P40_20670 PF04264 YceI-like domain P40_20675 PF01292 Prokaryotic cytochrome b561 P40_20690 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family P40_20695 PF01758 Sodium Bile acid symporter family P40_20700 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_20710 PF01053 Cys/Met metabolism PLP-dependent enzyme P40_20715 PF00378 Enoyl-CoA hydratase/isomerase P40_20720 PF12833 Helix-turn-helix domain P40_20730 PF00005 ABC transporter P40_20730 PF00571 CBS domain P40_20760 PF08534 Redoxin P40_20760 PF00462 Glutaredoxin P40_20765 PF02321 Outer membrane efflux protein P40_20770 PF00873 AcrB/AcrD/AcrF family P40_20775 PF00873 AcrB/AcrD/AcrF family P40_20780 PF13533 Biotin-lipoyl like P40_20785 PF00199 Catalase P40_20785 PF06628 Catalase-related immune-responsive P40_20790 PF03006 Haemolysin-III related P40_20795 PF07715 TonB-dependent Receptor Plug Domain P40_20795 PF00593 TonB dependent receptor P40_20800 PF00255 Glutathione peroxidase P40_20810 PF01966 HD domain P40_20815 PF13442 Cytochrome C oxidase, cbb3-type, subunit III P40_20825 PF05573 NosL P40_20830 PF12679 ABC-2 family transporter protein P40_20835 PF00005 ABC transporter P40_20840 PF05048 Periplasmic copper-binding protein (NosD) P40_20845 PF18764 Nitrous oxide reductase propeller repeat P40_20845 PF18793 Nitrous oxide reductase propeller repeat 2 P40_20850 PF04205 FMN-binding domain P40_20850 PF12801 4Fe-4S binding domain P40_20860 PF01323 DSBA-like thioredoxin domain P40_20865 PF00034 Cytochrome c P40_20875 PF01926 50S ribosome-binding GTPase P40_20885 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) P40_20890 PF01899 Na+/H+ ion antiporter subunit P40_20895 PF00361 Proton-conducting membrane transporter P40_20900 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L P40_20905 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter P40_20905 PF13244 Domain of unknown function (DUF4040) P40_20905 PF00361 Proton-conducting membrane transporter P40_20905 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus P40_20920 PF01926 50S ribosome-binding GTPase P40_20920 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal P40_20925 PF02311 AraC-like ligand binding domain P40_20925 PF12833 Helix-turn-helix domain P40_20935 PF00171 Aldehyde dehydrogenase family P40_20940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_20940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_20940 PF02770 Acyl-CoA dehydrogenase, middle domain P40_20945 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain P40_20945 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain P40_20945 PF00378 Enoyl-CoA hydratase/isomerase P40_20950 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase P40_20950 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase P40_20965 PF05721 Phytanoyl-CoA dioxygenase (PhyH) P40_20975 PF03466 LysR substrate binding domain P40_20975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_20980 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component P40_20995 PF13419 Haloacid dehalogenase-like hydrolase P40_21010 PF09278 MerR, DNA binding P40_21010 PF00376 MerR family regulatory protein P40_21015 PF00005 ABC transporter P40_21020 PF01061 ABC-2 type transporter P40_21040 PF13417 Glutathione S-transferase, N-terminal domain P40_21040 PF00043 Glutathione S-transferase, C-terminal domain P40_21045 PF00924 Mechanosensitive ion channel P40_21045 PF05552 Conserved TM helix P40_21050 PF08534 Redoxin P40_21065 PF04461 Protein of unknown function (DUF520) P40_21070 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB P40_21075 PF01381 Helix-turn-helix P40_21080 PF04013 Putative SAM-dependent RNA methyltransferase P40_21085 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain P40_21085 PF00476 DNA polymerase family A P40_21085 PF01612 3'-5' exonuclease P40_21085 PF01367 5'-3' exonuclease, C-terminal SAM fold P40_21090 PF07859 alpha/beta hydrolase fold P40_21095 PF01636 Phosphotransferase enzyme family P40_21110 PF00005 ABC transporter P40_21115 PF00950 ABC 3 transport family P40_21120 PF01554 MatE P40_21145 PF03466 LysR substrate binding domain P40_21145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_21175 PF18113 Rubredoxin binding C-terminal domain P40_21175 PF07992 Pyridine nucleotide-disulphide oxidoreductase P40_21180 PF00301 Rubredoxin P40_21185 PF04345 Chorismate lyase P40_21190 PF01040 UbiA prenyltransferase family P40_21195 PF00486 Transcriptional regulatory protein, C terminal P40_21195 PF00072 Response regulator receiver domain P40_21200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P40_21200 PF11808 Phosphate regulon sensor protein PhoR P40_21200 PF00512 His Kinase A (phospho-acceptor) domain P40_21200 PF00989 PAS fold P40_21205 PF04102 SlyX P40_21210 PF00440 Bacterial regulatory proteins, tetR family P40_21220 PF01169 Uncharacterized protein family UPF0016 P40_21225 PF07152 YaeQ protein P40_21235 PF03358 NADPH-dependent FMN reductase P40_21240 PF02040 Arsenical pump membrane protein P40_21245 PF01451 Low molecular weight phosphotyrosine protein phosphatase P40_21250 PF01022 Bacterial regulatory protein, arsR family P40_21255 PF01895 PhoU domain P40_21260 PF00005 ABC transporter P40_21265 PF00528 Binding-protein-dependent transport system inner membrane component P40_21270 PF00528 Binding-protein-dependent transport system inner membrane component P40_21275 PF12849 PBP superfamily domain P40_21285 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component P40_21290 PF03061 Thioesterase superfamily P40_21295 PF03480 Bacterial extracellular solute-binding protein, family 7 P40_21300 PF13361 UvrD-like helicase C-terminal domain P40_21300 PF00580 UvrD/REP helicase N-terminal domain P40_21305 PF00563 EAL domain P40_21305 PF00990 Diguanylate cyclase, GGDEF domain P40_21305 PF03707 Bacterial signalling protein N terminal repeat P40_21320 PF00158 Sigma-54 interaction domain P40_21320 PF02954 Bacterial regulatory protein, Fis family P40_21320 PF01590 GAF domain P40_21330 PF13360 PQQ-like domain P40_21330 PF13442 Cytochrome C oxidase, cbb3-type, subunit III P40_21335 PF00171 Aldehyde dehydrogenase family P40_21365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region P40_21365 PF00005 ABC transporter P40_21370 PF12911 N-terminal TM domain of oligopeptide transport permease C P40_21370 PF00528 Binding-protein-dependent transport system inner membrane component P40_21375 PF00528 Binding-protein-dependent transport system inner membrane component P40_21380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle P40_21385 PF00106 short chain dehydrogenase P40_21385 PF00561 alpha/beta hydrolase fold P40_21395 PF18158 Adaptive response protein AidB N-terminal domain P40_21395 PF02770 Acyl-CoA dehydrogenase, middle domain P40_21395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_21400 PF17925 Tetracyclin repressor-like, C-terminal domain P40_21400 PF00440 Bacterial regulatory proteins, tetR family P40_21405 PF00355 Rieske [2Fe-2S] domain P40_21415 PF00487 Fatty acid desaturase P40_21420 PF00107 Zinc-binding dehydrogenase P40_21420 PF08240 Alcohol dehydrogenase GroES-like domain P40_21425 PF03061 Thioesterase superfamily P40_21430 PF13193 AMP-binding enzyme C-terminal domain P40_21430 PF00501 AMP-binding enzyme P40_21435 PF13091 PLD-like domain P40_21440 PF01741 Large-conductance mechanosensitive channel, MscL P40_21445 PF01641 SelR domain P40_21445 PF01625 Peptide methionine sulfoxide reductase P40_21450 PF02872 5'-nucleotidase, C-terminal domain P40_21450 PF00149 Calcineurin-like phosphoesterase P40_21460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family P40_21460 PF03466 LysR substrate binding domain P40_21475 PF01979 Amidohydrolase family P40_21485 PF02653 Branched-chain amino acid transport system / permease component P40_21490 PF02653 Branched-chain amino acid transport system / permease component P40_21495 PF12399 Branched-chain amino acid ATP-binding cassette transporter P40_21495 PF00005 ABC transporter P40_21500 PF00005 ABC transporter P40_21520 PF01047 MarR family P40_21525 PF01380 SIS domain P40_21530 PF00132 Bacterial transferase hexapeptide (six repeats) P40_21530 PF12804 MobA-like NTP transferase domain P40_21530 PF14602 Hexapeptide repeat of succinyl-transferase P40_21535 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain P40_21535 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain P40_21540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain P40_21540 PF02874 ATP synthase alpha/beta family, beta-barrel domain P40_21545 PF00231 ATP synthase P40_21550 PF02874 ATP synthase alpha/beta family, beta-barrel domain P40_21550 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain P40_21550 PF00306 ATP synthase alpha/beta chain, C terminal domain P40_21555 PF00213 ATP synthase delta (OSCP) subunit P40_21560 PF00430 ATP synthase B/B' CF(0) P40_21565 PF00137 ATP synthase subunit C P40_21570 PF00119 ATP synthase A chain P40_21580 PF02195 ParB-like nuclease domain P40_21580 PF17762 HTH domain found in ParB protein P40_21585 PF13614 AAA domain P40_21590 PF02527 rRNA small subunit methyltransferase G P40_21595 PF01134 Glucose inhibited division protein A P40_21595 PF13932 GidA associated domain P40_21600 PF03471 Transporter associated domain P40_21600 PF02080 TrkA-C domain P40_21600 PF00999 Sodium/hydrogen exchanger family P40_21605 PF00106 short chain dehydrogenase P40_21615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain P40_21615 PF12806 Acetyl-CoA dehydrogenase C-terminal like P40_21615 PF02770 Acyl-CoA dehydrogenase, middle domain P40_21615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain P40_21620 PF13419 Haloacid dehalogenase-like hydrolase P40_21630 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain P40_21630 PF06974 Protein of unknown function (DUF1298) P40_21635 PF00313 'Cold-shock' DNA-binding domain P40_21645 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain P40_21645 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase P40_21655 PF00873 AcrB/AcrD/AcrF family P40_21660 PF13533 Biotin-lipoyl like P40_21665 PF00501 AMP-binding enzyme P40_21665 PF13193 AMP-binding enzyme C-terminal domain P40_21670 PF00206 Lyase P40_21670 PF10415 Fumarase C C-terminus P40_21680 PF10011 Predicted membrane protein (DUF2254) P40_21685 PF10396 GTP-binding protein TrmE N-terminus P40_21685 PF12631 MnmE helical domain P40_21685 PF01926 50S ribosome-binding GTPase P40_21690 PF14849 YidC periplasmic domain P40_21690 PF02096 60Kd inner membrane protein P40_21695 PF00825 Ribonuclease P P40_21700 PF00468 Ribosomal protein L34