APS56_00005 SM00060 Fibronectin type 3 domain APS56_00025 SM00342 helix_turn_helix, arabinose operon control protein APS56_00025 SM00387 Histidine kinase-like ATPases APS56_00025 SM00388 His Kinase A (phosphoacceptor) domain APS56_00025 SM00448 cheY-homologous receiver domain APS56_00085 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins APS56_00170 SM00986 Uracil DNA glycosylase superfamily APS56_00170 SM00987 UreE urease accessory protein, C-terminal domain APS56_00185 SM00849 Metallo-beta-lactamase superfamily APS56_00190 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain APS56_00235 SM00867 YceI-like domain APS56_00245 SM00487 DEAD-like helicases superfamily APS56_00295 SM00981 APS56_00295 APS56_00330 SM00530 Helix-turn-helix XRE-family like proteins APS56_00360 SM00448 cheY-homologous receiver domain APS56_00365 SM00387 Histidine kinase-like ATPases APS56_00365 SM00388 His Kinase A (phosphoacceptor) domain APS56_00380 SM00448 cheY-homologous receiver domain APS56_00395 SM00342 helix_turn_helix, arabinose operon control protein APS56_00415 SM00155 Phospholipase D. Active site motifs. APS56_00460 SM00480 DNA polymerase III beta subunit APS56_00535 SM00354 helix_turn _helix lactose operon repressor APS56_00540 SM00354 helix_turn _helix lactose operon repressor APS56_00565 SM00861 Transketolase, pyrimidine binding domain APS56_00580 SM00098 Alkaline phosphatase homologues APS56_00615 SM00100 Cyclic nucleotide-monophosphate binding domain APS56_00615 SM00419 helix_turn_helix, cAMP Regulatory protein APS56_00615 SM00448 cheY-homologous receiver domain APS56_00620 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APS56_00620 SM00091 PAS domain APS56_00620 SM00387 Histidine kinase-like ATPases APS56_00620 SM00388 His Kinase A (phosphoacceptor) domain APS56_00630 SM00345 helix_turn_helix gluconate operon transcriptional repressor APS56_00635 SM01007 Class II Aldolase and Adducin N-terminal domain APS56_00650 SM01007 Class II Aldolase and Adducin N-terminal domain APS56_00710 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain APS56_00740 SM00387 Histidine kinase-like ATPases APS56_00740 SM00433 TopoisomeraseII APS56_00750 SM00434 DNA Topoisomerase IV APS56_00780 SM00465 GIY-YIG type nucleases (URI domain) APS56_00780 SM00479 APS56_00780 APS56_00840 SM00487 DEAD-like helicases superfamily APS56_00840 SM00490 helicase superfamily c-terminal domain APS56_00860 SM00977 TilS substrate C-terminal domain APS56_00880 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APS56_00915 SM00387 Histidine kinase-like ATPases APS56_00920 SM00421 helix_turn_helix, Lux Regulon APS56_00920 SM00448 cheY-homologous receiver domain APS56_00930 SM00926 Molybdopterin oxidoreductase Fe4S4 domain APS56_00950 SM00631 APS56_00950 APS56_00960 SM00965 Secretin and TonB N terminus short domain APS56_00980 SM00560 LamG-like jellyroll fold domain APS56_01030 SM00091 PAS domain APS56_01035 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APS56_01035 SM00091 PAS domain APS56_01035 SM00387 Histidine kinase-like ATPases APS56_01035 SM00388 His Kinase A (phosphoacceptor) domain APS56_01035 SM01079 APS56_01035 APS56_01040 SM00448 cheY-homologous receiver domain APS56_01045 SM00091 PAS domain APS56_01045 SM00387 Histidine kinase-like ATPases APS56_01045 SM00388 His Kinase A (phosphoacceptor) domain APS56_01045 SM00448 cheY-homologous receiver domain APS56_01050 SM00448 cheY-homologous receiver domain APS56_01070 SM00382 ATPases associated with a variety of cellular activities APS56_01095 SM00873 B3/4 domain APS56_01095 SM00874 tRNA synthetase B5 domain APS56_01095 SM00896 Ferredoxin-fold anticodon binding domain APS56_01105 SM00487 DEAD-like helicases superfamily APS56_01105 SM00490 helicase superfamily c-terminal domain APS56_01125 SM00671 Sel1-like repeats. APS56_01275 SM00382 ATPases associated with a variety of cellular activities APS56_01335 SM00448 cheY-homologous receiver domain APS56_01335 SM00850 LytTr DNA-binding domain APS56_01415 SM00530 Helix-turn-helix XRE-family like proteins APS56_01425 SM00950 APS56_01425 APS56_01520 SM00479 APS56_01520 APS56_01525 SM00116 Domain in cystathionine beta-synthase and other proteins. APS56_01540 SM00861 Transketolase, pyrimidine binding domain APS56_01555 SM00382 ATPases associated with a variety of cellular activities APS56_01600 SM00382 ATPases associated with a variety of cellular activities APS56_01600 SM00464 Found in ATP-dependent protease La (LON) APS56_01620 SM00710 Parallel beta-helix repeats APS56_01630 SM00448 cheY-homologous receiver domain APS56_01630 SM00850 LytTr DNA-binding domain APS56_01640 SM00257 Lysin motif APS56_01645 SM00316 Ribosomal protein S1-like RNA-binding domain APS56_01740 SM00855 Phosphoglycerate mutase family APS56_01765 SM00382 ATPases associated with a variety of cellular activities APS56_01815 SM00563 Phosphate acyltransferases APS56_01900 SM01329 APS56_01900 APS56_01905 SM00917 LeuA allosteric (dimerisation) domain APS56_01910 SM00710 Parallel beta-helix repeats APS56_01955 SM00244 prohibitin homologues APS56_01985 SM00965 Secretin and TonB N terminus short domain APS56_02005 SM00822 APS56_02005 APS56_02010 SM00881 CoA binding domain APS56_02020 SM00841 Elongation factor P, C-terminal APS56_02020 SM01185 APS56_02020 APS56_02040 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. APS56_02045 SM00448 cheY-homologous receiver domain APS56_02065 SM01002 Alanine dehydrogenase/PNT, C-terminal domain APS56_02065 SM01003 Alanine dehydrogenase/PNT, N-terminal domain APS56_02125 SM00984 UDP binding domain APS56_02130 SM00984 UDP binding domain APS56_02180 SM00710 Parallel beta-helix repeats APS56_02255 SM00344 helix_turn_helix ASNC type APS56_02260 SM00631 APS56_02260 APS56_02295 SM00478 endonuclease III APS56_02320 SM00533 DNA-binding domain of DNA mismatch repair MUTS family APS56_02320 SM00534 ATPase domain of DNA mismatch repair MUTS family APS56_02335 SM00450 Rhodanese Homology Domain APS56_02440 SM00843 APS56_02440 APS56_02480 SM00342 helix_turn_helix, arabinose operon control protein APS56_02565 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor APS56_02610 SM00342 helix_turn_helix, arabinose operon control protein APS56_02655 SM00530 Helix-turn-helix XRE-family like proteins APS56_02685 SM00342 helix_turn_helix, arabinose operon control protein APS56_02695 SM00382 ATPases associated with a variety of cellular activities APS56_02780 SM00487 DEAD-like helicases superfamily APS56_02860 SM00382 ATPases associated with a variety of cellular activities APS56_02870 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APS56_02930 SM00758 APS56_02930 APS56_02935 SM00710 Parallel beta-helix repeats APS56_02950 SM00812 Alpha-L-fucosidase APS56_02980 SM00758 APS56_02980 APS56_02980 SM01217 APS56_02980 APS56_03015 SM00758 APS56_03015 APS56_03015 SM01217 APS56_03015 APS56_03025 SM00812 Alpha-L-fucosidase APS56_03045 SM01290 APS56_03045 APS56_03095 SM00448 cheY-homologous receiver domain APS56_03095 SM00850 LytTr DNA-binding domain APS56_03165 SM00382 ATPases associated with a variety of cellular activities APS56_03245 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. APS56_03260 SM00028 Tetratricopeptide repeats APS56_03265 SM00434 DNA Topoisomerase IV APS56_03270 SM00382 ATPases associated with a variety of cellular activities APS56_03270 SM01086 C-terminal, D2-small domain, of ClpB protein APS56_03315 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APS56_03315 SM00387 Histidine kinase-like ATPases APS56_03320 SM00322 K homology RNA-binding domain APS56_03320 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. APS56_03400 SM01057 Eukaryotic-type carbonic anhydrase APS56_03440 SM00450 Rhodanese Homology Domain APS56_03520 SM00357 Cold shock protein domain APS56_03525 SM00487 DEAD-like helicases superfamily APS56_03525 SM00490 helicase superfamily c-terminal domain APS56_03590 SM00387 Histidine kinase-like ATPases APS56_03590 SM00388 His Kinase A (phosphoacceptor) domain APS56_03590 SM00448 cheY-homologous receiver domain APS56_03655 SM00646 APS56_03655 APS56_03670 SM00387 Histidine kinase-like ATPases APS56_03670 SM00388 His Kinase A (phosphoacceptor) domain APS56_03670 SM00448 cheY-homologous receiver domain APS56_03675 SM01240 APS56_03675 APS56_03685 SM00460 Transglutaminase/protease-like homologues APS56_03695 SM00460 Transglutaminase/protease-like homologues APS56_03715 SM00382 ATPases associated with a variety of cellular activities APS56_03715 SM01086 C-terminal, D2-small domain, of ClpB protein APS56_03720 SM01133 APS56_03720 APS56_03725 SM00797 Allophanate hydrolase subunit 2 APS56_03730 SM00796 Allophanate hydrolase subunit 1 APS56_03745 SM00382 ATPases associated with a variety of cellular activities APS56_03755 SM00852 Probable molybdopterin binding domain APS56_03790 SM00852 Probable molybdopterin binding domain APS56_03795 SM00729 Elongator protein 3, MiaB family, Radical SAM APS56_03805 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor APS56_03835 SM00382 ATPases associated with a variety of cellular activities APS56_03870 SM00448 cheY-homologous receiver domain APS56_03870 SM00850 LytTr DNA-binding domain APS56_03875 SM00487 DEAD-like helicases superfamily APS56_03875 SM00490 helicase superfamily c-terminal domain APS56_03880 SM00028 Tetratricopeptide repeats APS56_03915 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. APS56_03915 SM00954 Region found in RelA / SpoT proteins APS56_03925 SM00788 Adenylosuccinate synthetase APS56_03970 SM00028 Tetratricopeptide repeats APS56_04020 SM00382 ATPases associated with a variety of cellular activities APS56_04055 SM00363 S4 RNA-binding domain APS56_04125 SM00422 helix_turn_helix, mercury resistance APS56_04170 SM00732 Likely ribonuclease with RNase H fold. APS56_04250 SM00487 DEAD-like helicases superfamily APS56_04250 SM00490 helicase superfamily c-terminal domain APS56_04305 SM00382 ATPases associated with a variety of cellular activities APS56_04305 SM00448 cheY-homologous receiver domain APS56_04320 SM00382 ATPases associated with a variety of cellular activities APS56_04325 SM00271 DnaJ molecular chaperone homology domain APS56_04335 SM00867 YceI-like domain APS56_04340 SM00054 EF-hand, calcium binding motif APS56_04355 SM00014 Acid phosphatase homologues APS56_04385 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. APS56_04410 SM00257 Lysin motif APS56_04470 SM00871 Bacterial transcription activator, effector binding domain APS56_04485 SM00344 helix_turn_helix ASNC type APS56_04510 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family APS56_04515 SM00937 APS56_04515 APS56_04520 SM00116 Domain in cystathionine beta-synthase and other proteins. APS56_04520 SM01240 APS56_04520 APS56_04535 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins APS56_04535 SM00137 Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others) APS56_04605 SM00812 Alpha-L-fucosidase APS56_04665 SM00342 helix_turn_helix, arabinose operon control protein APS56_04665 SM00387 Histidine kinase-like ATPases APS56_04665 SM00388 His Kinase A (phosphoacceptor) domain APS56_04665 SM00448 cheY-homologous receiver domain APS56_04710 SM00530 Helix-turn-helix XRE-family like proteins APS56_04840 SM01126 APS56_04840 APS56_04850 SM00354 helix_turn _helix lactose operon repressor APS56_04905 SM00419 helix_turn_helix, cAMP Regulatory protein APS56_04925 SM00450 Rhodanese Homology Domain APS56_04925 SM00849 Metallo-beta-lactamase superfamily APS56_04985 SM00382 ATPases associated with a variety of cellular activities APS56_05015 SM00357 Cold shock protein domain APS56_05015 SM00382 ATPases associated with a variety of cellular activities APS56_05015 SM00959 Rho termination factor, N-terminal domain APS56_05070 SM01230 APS56_05070 APS56_05075 SM01230 APS56_05075 APS56_05135 SM01323 APS56_05135 APS56_05150 SM00382 ATPases associated with a variety of cellular activities APS56_05155 SM00712 DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria. APS56_05175 SM00341 Helicase and RNase D C-terminal APS56_05175 SM00487 DEAD-like helicases superfamily APS56_05175 SM00490 helicase superfamily c-terminal domain APS56_05175 SM00956 APS56_05175 APS56_05190 SM00382 ATPases associated with a variety of cellular activities APS56_05195 SM00244 prohibitin homologues APS56_05280 SM00858 APS56_05280 APS56_05385 SM00382 ATPases associated with a variety of cellular activities APS56_05415 SM00382 ATPases associated with a variety of cellular activities APS56_05440 SM00957 SecA DEAD-like domain APS56_05440 SM00958 SecA preprotein cross-linking domain APS56_05445 SM00729 Elongator protein 3, MiaB family, Radical SAM APS56_05475 SM00487 DEAD-like helicases superfamily APS56_05475 SM00490 helicase superfamily c-terminal domain APS56_05525 SM00663 RNA polymerase I subunit A N-terminus APS56_05550 SM00649 Ribosomal protein L11/L12 APS56_05555 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. APS56_05555 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. APS56_05680 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor APS56_05725 SM00028 Tetratricopeptide repeats APS56_05725 SM00671 Sel1-like repeats. APS56_05730 SM00382 ATPases associated with a variety of cellular activities APS56_05785 SM00838 Elongation factor G C-terminus APS56_05820 SM00642 Alpha-amylase domain APS56_05850 SM00054 EF-hand, calcium binding motif APS56_05885 SM00822 APS56_05885 APS56_05905 SM00858 APS56_05905 APS56_05915 SM01217 APS56_05915 APS56_05955 SM00606 Cellulose Binding Domain Type IV APS56_05975 SM00710 Parallel beta-helix repeats APS56_06025 SM01217 APS56_06025 APS56_06055 SM00606 Cellulose Binding Domain Type IV APS56_06055 SM00607 eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain APS56_06070 SM00812 Alpha-L-fucosidase APS56_06075 SM00710 Parallel beta-helix repeats APS56_06135 SM00812 Alpha-L-fucosidase APS56_06155 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. APS56_06185 SM00342 helix_turn_helix, arabinose operon control protein APS56_06185 SM00387 Histidine kinase-like ATPases APS56_06185 SM00388 His Kinase A (phosphoacceptor) domain APS56_06185 SM00448 cheY-homologous receiver domain APS56_06190 SM00342 helix_turn_helix, arabinose operon control protein APS56_06270 SM00342 helix_turn_helix, arabinose operon control protein APS56_06270 SM00387 Histidine kinase-like ATPases APS56_06270 SM00388 His Kinase A (phosphoacceptor) domain APS56_06270 SM00448 cheY-homologous receiver domain APS56_06280 SM00387 Histidine kinase-like ATPases APS56_06280 SM00388 His Kinase A (phosphoacceptor) domain APS56_06285 SM00382 ATPases associated with a variety of cellular activities APS56_06285 SM00448 cheY-homologous receiver domain APS56_06290 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APS56_06305 SM00354 helix_turn _helix lactose operon repressor APS56_06355 SM00354 helix_turn _helix lactose operon repressor APS56_06385 SM00248 ankyrin repeats APS56_06440 SM00382 ATPases associated with a variety of cellular activities APS56_06470 SM00900 APS56_06470 APS56_06515 SM00028 Tetratricopeptide repeats APS56_06520 SM01359 APS56_06520 APS56_06520 SM01360 APS56_06520 APS56_06565 SM01001 AIR carboxylase APS56_06675 SM00477 DNA/RNA non-specific endonuclease APS56_06675 SM00892 DNA/RNA non-specific endonuclease APS56_06690 SM00382 ATPases associated with a variety of cellular activities APS56_06765 SM00421 helix_turn_helix, Lux Regulon APS56_06775 SM00382 ATPases associated with a variety of cellular activities APS56_06795 SM00342 helix_turn_helix, arabinose operon control protein APS56_06840 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor APS56_06930 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor APS56_06940 SM00342 helix_turn_helix, arabinose operon control protein APS56_06980 SM00530 Helix-turn-helix XRE-family like proteins APS56_07005 SM00646 APS56_07005 APS56_07120 SM00530 Helix-turn-helix XRE-family like proteins APS56_07160 SM00382 ATPases associated with a variety of cellular activities APS56_07200 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain APS56_07200 SM00437 Bacterial DNA topoisomerase I DNA-binding domain APS56_07200 SM00493 APS56_07200 APS56_07210 SM00729 Elongator protein 3, MiaB family, Radical SAM APS56_07215 SM00382 ATPases associated with a variety of cellular activities APS56_07235 SM00883 Chaperonin 10 Kd subunit APS56_07250 SM00342 helix_turn_helix, arabinose operon control protein APS56_07310 SM00830 Chorismate mutase type II APS56_07330 SM00382 ATPases associated with a variety of cellular activities APS56_07360 SM01018 B12 binding domain APS56_07450 SM01329 APS56_07450 APS56_07500 SM00859 Semialdehyde dehydrogenase, NAD binding domain APS56_07575 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain APS56_07575 SM00437 Bacterial DNA topoisomerase I DNA-binding domain APS56_07575 SM00493 APS56_07575 APS56_07605 SM00563 Phosphate acyltransferases APS56_07670 SM00342 helix_turn_helix, arabinose operon control protein APS56_07735 SM00867 YceI-like domain APS56_07760 SM01211 APS56_07760 APS56_07780 SM00710 Parallel beta-helix repeats APS56_07790 SM00347 helix_turn_helix multiple antibiotic resistance protein APS56_07845 SM00100 Cyclic nucleotide-monophosphate binding domain APS56_07845 SM00419 helix_turn_helix, cAMP Regulatory protein APS56_07855 SM00100 Cyclic nucleotide-monophosphate binding domain APS56_07855 SM00419 helix_turn_helix, cAMP Regulatory protein APS56_07855 SM00448 cheY-homologous receiver domain APS56_07860 SM00091 PAS domain APS56_07860 SM00387 Histidine kinase-like ATPases APS56_07860 SM00388 His Kinase A (phosphoacceptor) domain APS56_07920 SM00345 helix_turn_helix gluconate operon transcriptional repressor APS56_07950 SM00450 Rhodanese Homology Domain APS56_07990 SM00878 Biotin carboxylase C-terminal domain APS56_07995 SM00710 Parallel beta-helix repeats APS56_08105 SM00870 APS56_08105 APS56_08215 SM00268 Actin APS56_08225 SM00028 Tetratricopeptide repeats APS56_08225 SM00387 Histidine kinase-like ATPases APS56_08230 SM00448 cheY-homologous receiver domain APS56_08230 SM00850 LytTr DNA-binding domain APS56_08235 SM00798 AICARFT/IMPCHase bienzyme APS56_08235 SM00851 MGS-like domain APS56_08270 SM00028 Tetratricopeptide repeats APS56_08305 SM00342 helix_turn_helix, arabinose operon control protein APS56_08310 SM00448 cheY-homologous receiver domain APS56_08315 SM00387 Histidine kinase-like ATPases APS56_08315 SM00388 His Kinase A (phosphoacceptor) domain APS56_08410 SM00116 Domain in cystathionine beta-synthase and other proteins. APS56_08415 SM00116 Domain in cystathionine beta-synthase and other proteins. APS56_08440 SM00864 Tubulin/FtsZ family, GTPase domain APS56_08440 SM00865 Tubulin/FtsZ family, C-terminal domain APS56_08445 SM00842 Cell division protein FtsA APS56_08485 SM00740 APS56_08485 APS56_08520 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APS56_08520 SM00245 tail specific protease APS56_08585 SM01091 Transporter associated domain APS56_08600 SM00028 Tetratricopeptide repeats APS56_08620 SM00530 Helix-turn-helix XRE-family like proteins APS56_08685 SM00487 DEAD-like helicases superfamily APS56_08720 SM00729 Elongator protein 3, MiaB family, Radical SAM APS56_08785 SM00382 ATPases associated with a variety of cellular activities APS56_08805 SM00861 Transketolase, pyrimidine binding domain APS56_08810 SM00893 Electron transfer flavoprotein domain APS56_08815 SM00893 Electron transfer flavoprotein domain APS56_08845 SM00612 APS56_08845 APS56_08870 SM01266 APS56_08870 APS56_08875 SM00342 helix_turn_helix, arabinose operon control protein APS56_08885 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. APS56_08910 SM00060 Fibronectin type 3 domain APS56_08945 SM00631 APS56_08945 APS56_08950 SM00345 helix_turn_helix gluconate operon transcriptional repressor APS56_08955 SM00631 APS56_08955 APS56_09090 SM00363 S4 RNA-binding domain APS56_09120 SM00028 Tetratricopeptide repeats APS56_09135 SM00861 Transketolase, pyrimidine binding domain APS56_09155 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. APS56_09180 SM00710 Parallel beta-helix repeats APS56_09180 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses APS56_09185 SM00382 ATPases associated with a variety of cellular activities APS56_09265 SM00861 Transketolase, pyrimidine binding domain APS56_09275 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. APS56_09285 SM00947 Carbonic anhydrase APS56_09325 SM00116 Domain in cystathionine beta-synthase and other proteins. APS56_09340 SM00342 helix_turn_helix, arabinose operon control protein APS56_09360 SM00342 helix_turn_helix, arabinose operon control protein APS56_09410 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APS56_09410 SM00245 tail specific protease APS56_09450 SM00938 Nitrogen regulatory protein P-II APS56_09460 SM00938 Nitrogen regulatory protein P-II APS56_09510 SM00563 Phosphate acyltransferases APS56_09535 SM00342 helix_turn_helix, arabinose operon control protein APS56_09560 SM00116 Domain in cystathionine beta-synthase and other proteins. APS56_09560 SM00924 MgtE intracellular N domain APS56_09565 SM00650 Ribosomal RNA adenine dimethylases APS56_09575 SM00530 Helix-turn-helix XRE-family like proteins APS56_09580 SM00028 Tetratricopeptide repeats APS56_09590 SM00752 Horizontally Transferred TransMembrane Domain APS56_09595 SM00904 Riboflavin kinase APS56_09615 SM01400 APS56_09615 APS56_09690 SM00812 Alpha-L-fucosidase APS56_09705 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APS56_09705 SM00710 Parallel beta-helix repeats APS56_09920 SM00710 Parallel beta-helix repeats APS56_09955 SM00710 Parallel beta-helix repeats APS56_09985 SM00342 helix_turn_helix, arabinose operon control protein APS56_09985 SM00387 Histidine kinase-like ATPases APS56_09985 SM00388 His Kinase A (phosphoacceptor) domain APS56_09985 SM00448 cheY-homologous receiver domain APS56_10005 SM00072 Guanylate kinase homologues. APS56_10040 SM00530 Helix-turn-helix XRE-family like proteins APS56_10050 SM00342 helix_turn_helix, arabinose operon control protein APS56_10050 SM00387 Histidine kinase-like ATPases APS56_10050 SM00388 His Kinase A (phosphoacceptor) domain APS56_10050 SM00448 cheY-homologous receiver domain APS56_10060 SM00812 Alpha-L-fucosidase APS56_10065 SM00812 Alpha-L-fucosidase APS56_10070 SM00812 Alpha-L-fucosidase APS56_10135 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APS56_10160 SM00342 helix_turn_helix, arabinose operon control protein APS56_10185 SM00899 APS56_10185 APS56_10200 SM00529 Helix-turn-helix diphteria tox regulatory element APS56_10200 SM00899 APS56_10200 APS56_10215 SM00382 ATPases associated with a variety of cellular activities APS56_10245 SM00487 DEAD-like helicases superfamily APS56_10245 SM00490 helicase superfamily c-terminal domain APS56_10245 SM00982 APS56_10245 APS56_10245 SM01058 CarD-like/TRCF domain APS56_10265 SM00213 Ubiquitin homologues APS56_10270 SM00316 Ribosomal protein S1-like RNA-binding domain APS56_10270 SM00732 Likely ribonuclease with RNase H fold. APS56_10330 SM00271 DnaJ molecular chaperone homology domain APS56_10345 SM00563 Phosphate acyltransferases APS56_10355 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. APS56_10360 SM00342 helix_turn_helix, arabinose operon control protein APS56_10410 SM00729 Elongator protein 3, MiaB family, Radical SAM APS56_10430 SM00387 Histidine kinase-like ATPases APS56_10430 SM00388 His Kinase A (phosphoacceptor) domain APS56_10455 SM00342 helix_turn_helix, arabinose operon control protein APS56_10490 SM00487 DEAD-like helicases superfamily APS56_10500 SM01004 Delta-aminolevulinic acid dehydratase APS56_10505 SM00116 Domain in cystathionine beta-synthase and other proteins. APS56_10525 SM00382 ATPases associated with a variety of cellular activities APS56_10530 SM00882 Coenzyme A transferase APS56_10535 SM00882 Coenzyme A transferase APS56_10565 SM00450 Rhodanese Homology Domain APS56_10570 SM00382 ATPases associated with a variety of cellular activities APS56_10590 SM00563 Phosphate acyltransferases APS56_10635 SM00028 Tetratricopeptide repeats APS56_10730 SM01209 APS56_10730 APS56_10730 SM01210 APS56_10730 APS56_10805 SM00984 UDP binding domain APS56_10865 SM00257 Lysin motif APS56_10890 SM00935 Outer membrane protein (OmpH-like) APS56_10900 SM01228 APS56_10900 APS56_10920 SM00421 helix_turn_helix, Lux Regulon APS56_10940 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APS56_10940 SM00245 tail specific protease APS56_10980 SM00316 Ribosomal protein S1-like RNA-binding domain APS56_10980 SM00357 Cold shock protein domain APS56_10980 SM00955 APS56_10980 APS56_10990 SM00387 Histidine kinase-like ATPases APS56_10990 SM00388 His Kinase A (phosphoacceptor) domain APS56_10990 SM00448 cheY-homologous receiver domain APS56_10995 SM00382 ATPases associated with a variety of cellular activities APS56_10995 SM00448 cheY-homologous receiver domain APS56_11015 SM00905 Dihydroneopterin aldolase APS56_11035 SM00244 prohibitin homologues APS56_11065 SM00849 Metallo-beta-lactamase superfamily APS56_11090 SM00642 Alpha-amylase domain APS56_11195 SM00878 Biotin carboxylase C-terminal domain APS56_11225 SM00382 ATPases associated with a variety of cellular activities APS56_11240 SM00859 Semialdehyde dehydrogenase, NAD binding domain APS56_11250 SM01005 Alanine racemase, C-terminal domain APS56_11275 SM00986 Uracil DNA glycosylase superfamily APS56_11275 SM00987 UreE urease accessory protein, C-terminal domain APS56_11315 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. APS56_11330 SM01038 Beta galactosidase small chain APS56_11355 SM00342 helix_turn_helix, arabinose operon control protein APS56_11355 SM00387 Histidine kinase-like ATPases APS56_11355 SM00388 His Kinase A (phosphoacceptor) domain APS56_11355 SM00448 cheY-homologous receiver domain APS56_11420 SM00825 Beta-ketoacyl synthase APS56_11425 SM00358 Double-stranded RNA binding motif APS56_11425 SM00535 Ribonuclease III family APS56_11455 SM01118 APS56_11455 APS56_11475 SM01359 APS56_11475 APS56_11475 SM01360 APS56_11475 APS56_11480 SM00341 Helicase and RNase D C-terminal APS56_11480 SM00382 ATPases associated with a variety of cellular activities APS56_11520 SM00327 von Willebrand factor (vWF) type A domain APS56_11525 SM00327 von Willebrand factor (vWF) type A domain APS56_11530 SM00028 Tetratricopeptide repeats APS56_11540 SM00028 Tetratricopeptide repeats APS56_11540 SM00287 Bacterial SH3 domain homologues APS56_11545 SM00947 Carbonic anhydrase APS56_11570 SM00248 ankyrin repeats APS56_11705 SM00345 helix_turn_helix gluconate operon transcriptional repressor APS56_11755 SM01011 Aminopeptidase P, N-terminal domain APS56_11780 SM00342 helix_turn_helix, arabinose operon control protein APS56_11825 SM00382 ATPases associated with a variety of cellular activities APS56_11850 SM00382 ATPases associated with a variety of cellular activities APS56_11875 SM00411 bacterial (prokaryotic) histone like domain APS56_11880 SM00478 endonuclease III APS56_11890 SM01091 Transporter associated domain APS56_11920 SM00028 Tetratricopeptide repeats APS56_11920 SM00421 helix_turn_helix, Lux Regulon APS56_11940 SM00996 S-adenosyl-L-homocysteine hydrolase APS56_11940 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain APS56_12015 SM00342 helix_turn_helix, arabinose operon control protein APS56_12025 SM00382 ATPases associated with a variety of cellular activities APS56_12075 SM00382 ATPases associated with a variety of cellular activities APS56_12080 SM00560 LamG-like jellyroll fold domain APS56_12130 SM00465 GIY-YIG type nucleases (URI domain) APS56_12190 SM00387 Histidine kinase-like ATPases APS56_12190 SM00388 His Kinase A (phosphoacceptor) domain APS56_12260 SM00679 Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. APS56_12265 SM01002 Alanine dehydrogenase/PNT, C-terminal domain APS56_12265 SM01003 Alanine dehydrogenase/PNT, N-terminal domain APS56_12275 SM00534 ATPase domain of DNA mismatch repair MUTS family APS56_12310 SM00344 helix_turn_helix ASNC type APS56_12380 SM00345 helix_turn_helix gluconate operon transcriptional repressor APS56_12405 SM00448 cheY-homologous receiver domain APS56_12405 SM00862 Transcriptional regulatory protein, C terminal APS56_12410 SM00387 Histidine kinase-like ATPases APS56_12410 SM00388 His Kinase A (phosphoacceptor) domain APS56_12455 SM00890 Domain of unknown function APS56_12475 SM00900 APS56_12475 APS56_12555 SM00479 APS56_12555 APS56_12555 SM00481 DNA polymerase alpha chain like domain APS56_12570 SM00448 cheY-homologous receiver domain APS56_12570 SM00850 LytTr DNA-binding domain APS56_12590 SM00382 ATPases associated with a variety of cellular activities APS56_12635 SM00858 APS56_12635 APS56_12640 SM00354 helix_turn _helix lactose operon repressor APS56_12660 SM00710 Parallel beta-helix repeats APS56_12675 SM00710 Parallel beta-helix repeats APS56_12745 SM00354 helix_turn _helix lactose operon repressor APS56_12750 SM00028 Tetratricopeptide repeats APS56_12750 SM00387 Histidine kinase-like ATPases APS56_12755 SM00448 cheY-homologous receiver domain APS56_12790 SM00729 Elongator protein 3, MiaB family, Radical SAM APS56_12815 SM00782 PhnA Zinc-Ribbon APS56_12870 SM00098 Alkaline phosphatase homologues APS56_12885 SM00322 K homology RNA-binding domain APS56_12955 SM00382 ATPases associated with a variety of cellular activities APS56_12970 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APS56_12970 SM00387 Histidine kinase-like ATPases APS56_12970 SM00388 His Kinase A (phosphoacceptor) domain APS56_12975 SM00919 Malic enzyme, NAD binding domain APS56_12975 SM01274 APS56_12975 APS56_12980 SM00278 Helix-hairpin-helix DNA-binding motif class 1 APS56_13055 SM00382 ATPases associated with a variety of cellular activities APS56_13095 SM00932 Scaffold protein Nfu/NifU N terminal APS56_13115 SM00935 Outer membrane protein (OmpH-like) APS56_13120 SM00935 Outer membrane protein (OmpH-like) APS56_13175 SM00382 ATPases associated with a variety of cellular activities APS56_13175 SM00994 ClpX C4-type zinc finger APS56_13175 SM01086 C-terminal, D2-small domain, of ClpB protein APS56_13260 SM00533 DNA-binding domain of DNA mismatch repair MUTS family APS56_13260 SM00534 ATPase domain of DNA mismatch repair MUTS family APS56_13285 SM00028 Tetratricopeptide repeats APS56_13285 SM00387 Histidine kinase-like ATPases APS56_13295 SM00421 helix_turn_helix, Lux Regulon APS56_13295 SM00448 cheY-homologous receiver domain APS56_13310 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs APS56_13310 SM00474 3'-5' exonuclease APS56_13310 SM00475 5'-3' exonuclease APS56_13310 SM00482 DNA polymerase A domain APS56_13325 SM00729 Elongator protein 3, MiaB family, Radical SAM APS56_13335 SM00530 Helix-turn-helix XRE-family like proteins APS56_13410 SM00421 helix_turn_helix, Lux Regulon APS56_13410 SM00448 cheY-homologous receiver domain APS56_13415 SM00400 zinc finger APS56_13415 SM00493 APS56_13415 APS56_13430 SM00460 Transglutaminase/protease-like homologues APS56_13475 SM00422 helix_turn_helix, mercury resistance APS56_13485 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain APS56_13510 SM00028 Tetratricopeptide repeats APS56_13515 SM00421 helix_turn_helix, Lux Regulon APS56_13515 SM00448 cheY-homologous receiver domain APS56_13590 SM00450 Rhodanese Homology Domain APS56_13615 SM00047 Lysozyme subfamily 2 APS56_13615 SM00257 Lysin motif APS56_13670 SM00354 helix_turn _helix lactose operon repressor APS56_13695 SM00812 Alpha-L-fucosidase APS56_13710 SM00342 helix_turn_helix, arabinose operon control protein APS56_13710 SM00387 Histidine kinase-like ATPases APS56_13710 SM00388 His Kinase A (phosphoacceptor) domain APS56_13710 SM00448 cheY-homologous receiver domain APS56_13740 SM00710 Parallel beta-helix repeats APS56_13755 SM01038 Beta galactosidase small chain APS56_13890 SM00382 ATPases associated with a variety of cellular activities APS56_13900 SM00967 RNA 2'-O ribose methyltransferase substrate binding APS56_13935 SM00838 Elongation factor G C-terminus APS56_13935 SM00889 Elongation factor G, domain IV APS56_13940 SM01403 APS56_13940 APS56_13960 SM01382 APS56_13960 APS56_13960 SM01383 APS56_13960 APS56_13975 SM00322 K homology RNA-binding domain APS56_13995 SM01374 APS56_13995 APS56_14000 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. APS56_14065 SM00363 S4 RNA-binding domain APS56_14065 SM01390 APS56_14065 APS56_14070 SM00662 RNA polymerases D APS56_14080 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain APS56_14085 SM01192 APS56_14085 APS56_14085 SM01193 APS56_14085 APS56_14120 SM00382 ATPases associated with a variety of cellular activities APS56_14165 SM00382 ATPases associated with a variety of cellular activities APS56_14165 SM00962 SRP54-type protein, GTPase domain APS56_14165 SM00963 SRP54-type protein, helical bundle domain APS56_14175 SM00363 S4 RNA-binding domain APS56_14250 SM00387 Histidine kinase-like ATPases APS56_14250 SM00433 TopoisomeraseII APS56_14300 SM00316 Ribosomal protein S1-like RNA-binding domain APS56_14300 SM00322 K homology RNA-binding domain APS56_14305 SM01387 APS56_14305 APS56_14310 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APS56_14310 SM00091 PAS domain APS56_14310 SM00387 Histidine kinase-like ATPases APS56_14400 SM00562 APS56_14400 APS56_14405 SM00357 Cold shock protein domain APS56_14410 SM00357 Cold shock protein domain APS56_14420 SM00213 Ubiquitin homologues APS56_14450 SM00853 MutL C terminal dimerisation domain APS56_14450 SM01340 APS56_14450 APS56_14495 SM00470 ParB-like nuclease domain APS56_14565 SM00342 helix_turn_helix, arabinose operon control protein APS56_14625 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins APS56_14660 SM00342 helix_turn_helix, arabinose operon control protein APS56_14660 SM00871 Bacterial transcription activator, effector binding domain APS56_14715 SM00028 Tetratricopeptide repeats APS56_14715 SM00387 Histidine kinase-like ATPases APS56_14715 SM00388 His Kinase A (phosphoacceptor) domain APS56_14715 SM00448 cheY-homologous receiver domain APS56_14720 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APS56_14725 SM00729 Elongator protein 3, MiaB family, Radical SAM APS56_14815 SM00028 Tetratricopeptide repeats APS56_14815 SM00387 Histidine kinase-like ATPases APS56_14815 SM00388 His Kinase A (phosphoacceptor) domain APS56_14820 SM00836 DALR anticodon binding domain APS56_14820 SM01016 Arginyl tRNA synthetase N terminal dom APS56_14840 SM01209 APS56_14840 APS56_14845 SM00740 APS56_14845 APS56_14850 SM00363 S4 RNA-binding domain APS56_14890 SM00487 DEAD-like helicases superfamily APS56_14890 SM00490 helicase superfamily c-terminal domain APS56_14970 SM00450 Rhodanese Homology Domain APS56_14975 SM00450 Rhodanese Homology Domain APS56_14995 SM00354 helix_turn _helix lactose operon repressor APS56_15025 SM00098 Alkaline phosphatase homologues APS56_15050 SM00342 helix_turn_helix, arabinose operon control protein APS56_15055 SM01007 Class II Aldolase and Adducin N-terminal domain APS56_15075 SM00710 Parallel beta-helix repeats APS56_15100 SM01350 APS56_15100 APS56_15115 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain APS56_15165 SM00345 helix_turn_helix gluconate operon transcriptional repressor APS56_15165 SM00895 APS56_15165 APS56_15195 SM00382 ATPases associated with a variety of cellular activities APS56_15235 SM00729 Elongator protein 3, MiaB family, Radical SAM APS56_15270 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APS56_15270 SM01209 APS56_15270 APS56_15300 SM00382 ATPases associated with a variety of cellular activities APS56_15335 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APS56_15335 SM00245 tail specific protease APS56_15365 SM01235 APS56_15365 APS56_15375 SM00271 DnaJ molecular chaperone homology domain APS56_15380 SM00382 ATPases associated with a variety of cellular activities APS56_15420 SM00487 DEAD-like helicases superfamily APS56_15420 SM00490 helicase superfamily c-terminal domain APS56_15435 SM00967 RNA 2'-O ribose methyltransferase substrate binding APS56_15480 SM00840 APS56_15480 APS56_15500 SM00946 Prolyl-tRNA synthetase, C-terminal APS56_15525 SM00342 helix_turn_helix, arabinose operon control protein APS56_15525 SM00387 Histidine kinase-like ATPases APS56_15525 SM00388 His Kinase A (phosphoacceptor) domain APS56_15525 SM00448 cheY-homologous receiver domain APS56_15535 SM00060 Fibronectin type 3 domain APS56_15540 SM01038 Beta galactosidase small chain APS56_15580 SM00812 Alpha-L-fucosidase APS56_15610 SM00448 cheY-homologous receiver domain APS56_15620 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APS56_15620 SM00091 PAS domain APS56_15620 SM00387 Histidine kinase-like ATPases APS56_15620 SM00388 His Kinase A (phosphoacceptor) domain APS56_15625 SM00897 FIST N domain APS56_15625 SM01204 APS56_15625 APS56_15630 SM00387 Histidine kinase-like ATPases APS56_15630 SM00388 His Kinase A (phosphoacceptor) domain APS56_15640 SM00448 cheY-homologous receiver domain APS56_15640 SM00850 LytTr DNA-binding domain APS56_15670 SM00028 Tetratricopeptide repeats APS56_15705 SM00448 cheY-homologous receiver domain APS56_15750 SM00382 ATPases associated with a variety of cellular activities APS56_15790 SM00028 Tetratricopeptide repeats APS56_15795 SM00448 cheY-homologous receiver domain APS56_15825 SM00411 bacterial (prokaryotic) histone like domain APS56_15835 SM00487 DEAD-like helicases superfamily APS56_15835 SM00490 helicase superfamily c-terminal domain APS56_15925 SM00448 cheY-homologous receiver domain APS56_15925 SM00850 LytTr DNA-binding domain APS56_15930 SM00028 Tetratricopeptide repeats APS56_16165 SM00937 APS56_16165 APS56_16240 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase APS56_16265 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APS56_16300 SM00226 Low molecular weight phosphatase family APS56_16305 SM00382 ATPases associated with a variety of cellular activities APS56_16305 SM00760 Bacterial dnaA protein helix-turn-helix domain APS56_16340 SM00292 breast cancer carboxy-terminal domain APS56_16340 SM00532 Ligase N family APS56_16370 SM01130 APS56_16370 APS56_16380 SM01409 APS56_16380 APS56_16420 SM00387 Histidine kinase-like ATPases APS56_16420 SM00388 His Kinase A (phosphoacceptor) domain APS56_16425 SM00448 cheY-homologous receiver domain APS56_16425 SM00862 Transcriptional regulatory protein, C terminal APS56_16465 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor APS56_16520 SM00493 APS56_16520 APS56_16535 SM00479 APS56_16535 APS56_16550 SM00852 Probable molybdopterin binding domain APS56_16565 SM00382 ATPases associated with a variety of cellular activities APS56_16565 SM00962 SRP54-type protein, GTPase domain APS56_16565 SM00963 SRP54-type protein, helical bundle domain APS56_16575 SM00729 Elongator protein 3, MiaB family, Radical SAM APS56_16580 SM00028 Tetratricopeptide repeats APS56_16580 SM00671 Sel1-like repeats. APS56_16640 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain